Query 000265
Match_columns 1760
No_of_seqs 808 out of 4650
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 01:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0399 Glutamate synthase [Am 100.0 0E+00 0E+00 4212.3 116.8 1653 62-1760 35-1702(2142)
2 PRK11750 gltB glutamate syntha 100.0 0E+00 0E+00 3823.2 144.0 1473 102-1636 2-1480(1485)
3 cd00713 GltS Glutamine amidotr 100.0 9E-121 2E-125 1080.5 46.8 412 115-537 1-413 (413)
4 COG0069 GltB Glutamate synthas 100.0 5E-120 1E-124 1079.3 39.4 478 837-1331 2-483 (485)
5 PF04898 Glu_syn_central: Glut 100.0 9E-106 2E-110 913.1 19.9 286 590-881 2-287 (287)
6 COG0067 GltB Glutamate synthas 100.0 4E-102 9E-107 904.6 27.7 371 103-494 1-371 (371)
7 PF00310 GATase_2: Glutamine a 100.0 1.5E-98 3E-103 886.8 34.8 361 115-492 1-361 (361)
8 PF01645 Glu_synthase: Conserv 100.0 1.3E-82 2.9E-87 747.7 28.2 364 945-1316 1-368 (368)
9 COG0070 GltB Glutamate synthas 100.0 1.4E-73 3.1E-78 650.5 21.0 289 1342-1638 2-291 (301)
10 cd00982 gltB_C gltb_C. This do 100.0 1.6E-69 3.4E-74 605.2 25.0 250 1376-1625 1-251 (251)
11 cd02808 GltS_FMN Glutamate syn 100.0 3.8E-62 8.3E-67 585.7 31.6 360 961-1329 16-391 (392)
12 cd00981 arch_gltB Archaeal-typ 100.0 3.6E-39 7.7E-44 360.1 21.3 203 1385-1626 18-232 (232)
13 cd01907 GlxB Glutamine amidotr 100.0 1.3E-35 2.8E-40 337.8 24.1 198 286-516 45-249 (249)
14 PF01493 GXGXG: GXGXG motif; 100.0 2.2E-35 4.7E-40 325.6 13.5 195 1397-1591 2-201 (202)
15 cd00504 GXGXG GXGXG domain. Th 100.0 3.3E-32 7.1E-37 287.4 12.9 148 1405-1561 1-149 (149)
16 KOG0538 Glycolate oxidase [Ene 100.0 2.2E-29 4.8E-34 282.9 17.8 308 956-1329 9-355 (363)
17 PRK05437 isopentenyl pyrophosp 100.0 4.9E-28 1.1E-32 287.9 22.9 274 992-1330 39-339 (352)
18 cd04737 LOX_like_FMN L-Lactate 100.0 5E-28 1.1E-32 286.5 18.8 312 951-1326 7-350 (351)
19 PLN02493 probable peroxisomal 100.0 1.4E-27 3.1E-32 282.8 21.8 314 952-1326 6-353 (367)
20 cd02811 IDI-2_FMN Isopentenyl- 100.0 2.1E-27 4.6E-32 280.2 21.8 265 992-1321 31-324 (326)
21 COG0034 PurF Glutamine phospho 100.0 6.3E-28 1.4E-32 285.1 16.9 183 283-520 34-229 (470)
22 TIGR03122 one_C_dehyd_C formyl 100.0 4.4E-28 9.5E-33 274.7 14.0 156 1393-1570 61-217 (260)
23 PRK11197 lldD L-lactate dehydr 99.9 6.6E-27 1.4E-31 278.6 21.0 317 952-1326 6-374 (381)
24 cd03332 LMO_FMN L-Lactate 2-mo 99.9 5.6E-27 1.2E-31 279.7 19.9 313 951-1321 20-378 (383)
25 PF01070 FMN_dh: FMN-dependent 99.9 2.1E-27 4.6E-32 282.5 13.5 294 963-1321 6-350 (356)
26 PRK07349 amidophosphoribosyltr 99.9 1.4E-26 3.1E-31 284.4 19.3 188 284-523 63-263 (500)
27 TIGR02151 IPP_isom_2 isopenten 99.9 4.8E-26 1E-30 269.4 22.1 274 990-1328 30-330 (333)
28 cd02922 FCB2_FMN Flavocytochro 99.9 2.4E-26 5.2E-31 272.2 19.2 307 955-1321 3-341 (344)
29 TIGR02708 L_lactate_ox L-lacta 99.9 6.4E-26 1.4E-30 269.1 22.8 320 949-1327 13-358 (367)
30 PRK07847 amidophosphoribosyltr 99.9 2.2E-26 4.8E-31 283.2 17.4 192 284-523 53-254 (510)
31 PRK07272 amidophosphoribosyltr 99.9 4.5E-26 9.7E-31 279.3 18.5 186 284-522 40-235 (484)
32 cd00980 FwdC/FmdC FwdC/FmdC. T 99.9 1.5E-26 3.3E-31 254.3 12.8 154 1392-1567 19-173 (203)
33 PRK06388 amidophosphoribosyltr 99.9 4.5E-26 9.7E-31 279.0 18.3 183 284-520 48-239 (474)
34 PLN02979 glycolate oxidase 99.9 1.4E-25 3E-30 264.1 21.6 286 983-1327 40-353 (366)
35 PRK07631 amidophosphoribosyltr 99.9 6.4E-26 1.4E-30 277.4 18.8 185 284-522 40-233 (475)
36 PLN02535 glycolate oxidase 99.9 1.6E-25 3.4E-30 265.9 21.5 314 952-1327 8-353 (364)
37 cd04736 MDH_FMN Mandelate dehy 99.9 2.3E-25 4.9E-30 264.0 19.9 306 955-1321 3-359 (361)
38 PRK06781 amidophosphoribosyltr 99.9 4.6E-25 1E-29 270.2 19.4 183 284-520 40-231 (471)
39 PRK09246 amidophosphoribosyltr 99.9 3E-25 6.5E-30 274.6 17.7 186 284-520 30-235 (501)
40 PRK09123 amidophosphoribosyltr 99.9 7.7E-25 1.7E-29 269.0 18.0 184 284-520 50-242 (479)
41 cd02809 alpha_hydroxyacid_oxid 99.9 2.4E-24 5.2E-29 251.6 19.4 280 958-1321 7-297 (299)
42 KOG0572 Glutamine phosphoribos 99.9 1.5E-24 3.3E-29 249.0 16.8 193 283-523 31-239 (474)
43 COG1304 idi Isopentenyl diphos 99.9 2E-24 4.4E-29 256.1 18.5 304 965-1331 14-352 (360)
44 PLN02440 amidophosphoribosyltr 99.9 1.8E-24 3.8E-29 266.3 18.1 183 284-520 30-222 (479)
45 PRK08341 amidophosphoribosyltr 99.9 2E-24 4.4E-29 262.8 16.9 181 284-520 32-220 (442)
46 PRK05793 amidophosphoribosyltr 99.9 2.4E-24 5.1E-29 264.6 17.6 186 284-523 45-239 (469)
47 TIGR01134 purF amidophosphorib 99.9 6.3E-24 1.4E-28 259.5 21.0 185 284-520 30-222 (442)
48 PRK08525 amidophosphoribosyltr 99.9 1.3E-23 2.8E-28 256.9 18.6 183 284-520 30-222 (445)
49 cd00715 GPATase_N Glutamine am 99.9 2.4E-21 5.3E-26 221.3 19.5 187 284-523 29-225 (252)
50 cd00980 FwdC/FmdC FwdC/FmdC. T 99.9 1.1E-21 2.3E-26 216.3 11.7 124 1430-1566 20-153 (203)
51 cd00714 GFAT Glutamine amidotr 99.8 1.1E-20 2.5E-25 211.3 16.5 177 284-516 29-215 (215)
52 PTZ00295 glucosamine-fructose- 99.8 1.3E-20 2.7E-25 240.6 18.9 210 284-545 53-281 (640)
53 cd00352 Gn_AT_II Glutamine ami 99.8 5.4E-20 1.2E-24 203.2 15.6 178 284-514 33-220 (220)
54 TIGR01135 glmS glucosamine--fr 99.8 7.4E-20 1.6E-24 232.4 18.4 185 284-524 29-223 (607)
55 PLN02981 glucosamine:fructose- 99.8 1.6E-19 3.6E-24 231.2 18.8 188 284-525 36-277 (680)
56 PRK00331 glucosamine--fructose 99.8 1.6E-19 3.5E-24 229.2 17.5 186 284-525 30-225 (604)
57 COG2218 FwdC Formylmethanofura 99.8 1.8E-19 3.9E-24 198.7 11.0 146 1421-1577 80-229 (264)
58 TIGR03122 one_C_dehyd_C formyl 99.8 5.2E-19 1.1E-23 201.3 11.1 127 1427-1566 58-194 (260)
59 PRK05458 guanosine 5'-monophos 99.8 1.3E-17 2.9E-22 196.1 20.4 268 992-1332 16-318 (326)
60 TIGR01306 GMP_reduct_2 guanosi 99.8 1.6E-17 3.5E-22 194.7 19.9 266 992-1332 13-315 (321)
61 cd00381 IMPDH IMPDH: The catal 99.7 1.1E-16 2.3E-21 189.7 20.9 291 983-1327 4-322 (325)
62 cd00981 arch_gltB Archaeal-typ 99.7 7.8E-18 1.7E-22 189.4 10.4 121 1430-1562 27-154 (232)
63 PTZ00394 glucosamine-fructose- 99.7 4.6E-17 9.9E-22 208.4 18.0 209 284-545 36-314 (670)
64 PRK06843 inosine 5-monophospha 99.7 1.2E-16 2.5E-21 192.3 18.8 310 981-1332 10-389 (404)
65 cd01908 YafJ Glutamine amidotr 99.7 1.4E-16 3E-21 182.9 16.2 182 284-518 42-256 (257)
66 PRK08649 inosine 5-monophospha 99.7 2.1E-16 4.5E-21 189.4 17.0 174 1136-1328 175-366 (368)
67 TIGR03442 conserved hypothetic 99.7 1.7E-16 3.8E-21 181.8 14.4 190 284-519 43-244 (251)
68 COG2218 FwdC Formylmethanofura 99.7 6.2E-17 1.3E-21 179.0 8.8 151 1395-1560 68-231 (264)
69 PF13522 GATase_6: Glutamine a 99.7 5.2E-16 1.1E-20 161.9 13.0 116 319-491 9-133 (133)
70 cd00504 GXGXG GXGXG domain. Th 99.6 3E-16 6.6E-21 166.6 8.5 108 1447-1566 20-135 (149)
71 TIGR01304 IMP_DH_rel_2 IMP deh 99.6 6.5E-15 1.4E-19 176.3 19.1 168 1137-1328 177-368 (369)
72 PTZ00314 inosine-5'-monophosph 99.6 1.5E-14 3.3E-19 179.7 20.0 182 1141-1331 270-479 (495)
73 PF01493 GXGXG: GXGXG motif; 99.6 2E-15 4.4E-20 167.7 8.8 109 1427-1548 52-175 (202)
74 TIGR01305 GMP_reduct_1 guanosi 99.6 2.2E-14 4.7E-19 167.6 16.2 280 981-1332 8-337 (343)
75 PRK05096 guanosine 5'-monophos 99.5 1.1E-13 2.3E-18 161.9 16.0 280 982-1332 10-338 (346)
76 PF00478 IMPDH: IMP dehydrogen 99.5 2.7E-14 5.9E-19 169.4 10.5 184 1138-1331 134-342 (352)
77 PF03060 NMO: Nitronate monoox 99.5 1.4E-13 3E-18 163.7 12.7 203 1009-1263 12-229 (330)
78 PLN02274 inosine-5'-monophosph 99.5 7.7E-13 1.7E-17 164.8 19.5 164 1141-1324 277-473 (505)
79 cd00712 AsnB Glutamine amidotr 99.5 3.5E-13 7.6E-18 151.4 13.0 135 323-518 41-210 (220)
80 cd00982 gltB_C gltb_C. This do 99.5 3.2E-13 7E-18 153.3 12.1 146 1369-1546 30-191 (251)
81 TIGR03151 enACPred_II putative 99.4 2.1E-12 4.5E-17 152.4 13.7 189 1009-1263 12-200 (307)
82 PRK05567 inosine 5'-monophosph 99.4 2.6E-12 5.6E-17 160.1 15.2 175 1138-1332 254-463 (486)
83 TIGR01302 IMP_dehydrog inosine 99.4 3E-12 6.5E-17 158.1 15.6 164 1138-1321 250-448 (450)
84 cd04743 NPD_PKS 2-Nitropropane 99.4 2E-12 4.4E-17 152.1 13.2 196 1009-1263 3-212 (320)
85 PF13537 GATase_7: Glutamine a 99.4 5E-13 1.1E-17 138.0 5.3 113 328-495 1-123 (125)
86 COG0449 GlmS Glucosamine 6-pho 99.4 7.4E-12 1.6E-16 155.8 15.9 180 284-522 31-219 (597)
87 PRK07107 inosine 5-monophospha 99.3 6.4E-12 1.4E-16 156.5 15.2 176 1140-1332 270-480 (502)
88 COG2070 Dioxygenases related t 99.3 5.3E-12 1.1E-16 150.4 13.9 202 1006-1263 12-223 (336)
89 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1.6E-11 3.5E-16 152.0 16.3 175 1138-1332 251-464 (475)
90 PLN02826 dihydroorotate dehydr 99.3 3.1E-11 6.7E-16 147.0 18.0 156 1126-1324 225-406 (409)
91 PRK07565 dihydroorotate dehydr 99.3 1.9E-11 4.2E-16 145.7 16.0 164 1127-1327 137-307 (334)
92 cd04742 NPD_FabD 2-Nitropropan 99.3 1.2E-11 2.6E-16 150.0 13.3 218 1009-1263 14-258 (418)
93 PRK11750 gltB glutamate syntha 99.3 5.4E-12 1.2E-16 167.8 10.9 154 1369-1554 1245-1417(1485)
94 COG0167 PyrD Dihydroorotate de 99.3 4.1E-11 8.9E-16 140.6 14.6 149 1133-1325 141-307 (310)
95 PLN02549 asparagine synthase ( 99.3 1.5E-11 3.3E-16 155.7 11.8 131 324-517 44-183 (578)
96 PTZ00077 asparagine synthetase 99.2 2.5E-11 5.4E-16 154.1 12.4 137 323-519 48-193 (586)
97 cd04739 DHOD_like Dihydroorota 99.2 6.1E-11 1.3E-15 141.1 14.9 146 1138-1324 149-302 (325)
98 PRK07259 dihydroorotate dehydr 99.2 7.6E-10 1.7E-14 130.2 20.9 144 1135-1325 140-299 (301)
99 PLN02495 oxidoreductase, actin 99.2 2E-10 4.4E-15 138.8 15.5 155 1135-1325 165-336 (385)
100 TIGR02814 pfaD_fam PfaD family 99.2 1.5E-10 3.3E-15 141.3 14.3 217 1009-1262 19-262 (444)
101 TIGR01536 asn_synth_AEB aspara 99.2 1.3E-10 2.9E-15 144.2 13.4 116 322-495 40-163 (467)
102 TIGR01037 pyrD_sub1_fam dihydr 99.2 3.9E-10 8.4E-15 132.5 15.8 150 1135-1325 140-299 (300)
103 cd04740 DHOD_1B_like Dihydroor 99.2 4.5E-10 9.8E-15 131.6 16.1 147 1135-1325 137-296 (296)
104 PRK02506 dihydroorotate dehydr 99.2 5.3E-10 1.2E-14 132.4 16.7 146 1136-1325 141-307 (310)
105 PRK09431 asnB asparagine synth 99.1 1.4E-10 2.9E-15 146.7 11.9 132 324-517 44-184 (554)
106 cd03766 Gn_AT_II_novel Gn_AT_I 99.1 1.6E-10 3.5E-15 127.0 10.3 111 323-495 47-167 (181)
107 PRK07807 inosine 5-monophospha 99.1 6E-10 1.3E-14 138.4 16.2 182 1138-1332 253-466 (479)
108 TIGR03104 trio_amidotrans aspa 99.1 3E-10 6.5E-15 144.8 13.1 117 322-495 41-165 (589)
109 TIGR03108 eps_aminotran_1 exos 99.1 7.7E-10 1.7E-14 142.2 13.5 139 322-521 42-216 (628)
110 COG0367 AsnB Asparagine syntha 99.0 1.7E-09 3.8E-14 136.5 12.3 138 323-521 42-192 (542)
111 PRK08318 dihydropyrimidine deh 98.9 7.6E-09 1.6E-13 127.2 14.7 153 1135-1324 151-318 (420)
112 PF13230 GATase_4: Glutamine a 98.9 9.2E-10 2E-14 128.1 6.3 191 284-524 34-254 (271)
113 COG0070 GltB Glutamate synthas 98.9 2.7E-09 5.9E-14 124.3 9.9 117 1429-1559 103-230 (301)
114 TIGR01317 GOGAT_sm_gam glutama 98.9 9.3E-10 2E-14 137.5 5.4 60 1700-1760 1-60 (485)
115 PRK05286 dihydroorotate dehydr 98.9 1.6E-08 3.4E-13 121.6 15.2 145 1133-1314 187-344 (344)
116 cd02940 DHPD_FMN Dihydropyrimi 98.8 3.9E-08 8.4E-13 116.1 12.0 118 1135-1258 151-286 (299)
117 cd01909 betaLS_CarA_N Glutamin 98.7 2.8E-08 6.1E-13 111.0 9.8 124 342-522 44-187 (199)
118 TIGR01036 pyrD_sub2 dihydrooro 98.7 5.2E-08 1.1E-12 116.8 12.7 117 1134-1258 185-322 (335)
119 cd04741 DHOD_1A_like Dihydroor 98.7 1.9E-07 4.2E-12 110.1 15.5 120 1136-1258 141-277 (294)
120 KOG1268 Glucosamine 6-phosphat 98.7 2.3E-08 4.9E-13 120.7 7.6 127 254-409 16-153 (670)
121 cd04738 DHOD_2_like Dihydrooro 98.6 1.3E-07 2.7E-12 113.2 10.7 123 1134-1258 179-314 (327)
122 PF01180 DHO_dh: Dihydroorotat 98.5 3E-07 6.5E-12 108.3 9.9 116 1134-1258 143-278 (295)
123 cd02810 DHOD_DHPD_FMN Dihydroo 98.5 6.9E-07 1.5E-11 104.6 12.7 121 1135-1258 145-277 (289)
124 KOG2550 IMP dehydrogenase/GMP 98.5 2.1E-07 4.5E-12 110.3 7.4 167 1141-1327 280-479 (503)
125 KOG1436 Dihydroorotate dehydro 98.4 1.6E-06 3.4E-11 100.4 13.2 147 1136-1325 229-397 (398)
126 KOG0571 Asparagine synthase (g 98.4 3.6E-07 7.9E-12 108.8 7.6 135 325-523 44-187 (543)
127 PRK12809 putative oxidoreducta 98.4 1.4E-07 3E-12 121.9 4.3 52 1706-1760 173-225 (639)
128 PRK12779 putative bifunctional 98.4 1.5E-07 3.3E-12 125.8 4.6 52 1708-1760 143-216 (944)
129 TIGR00736 nifR3_rel_arch TIM-b 98.4 1.9E-06 4.1E-11 98.6 12.0 105 1135-1258 118-225 (231)
130 PRK12810 gltD glutamate syntha 98.3 4E-07 8.6E-12 113.7 5.0 60 1698-1760 1-60 (471)
131 cd01910 Wali7 This domain is p 98.3 3.2E-06 6.9E-11 95.8 11.3 112 347-515 74-190 (224)
132 PRK12769 putative oxidoreducta 98.3 3.9E-07 8.4E-12 118.1 4.5 51 1707-1760 191-242 (654)
133 cd02911 arch_FMN Archeal FMN-b 98.3 6.1E-06 1.3E-10 94.6 12.6 98 1135-1255 123-222 (233)
134 PRK12775 putative trifunctiona 98.2 9.1E-07 2E-11 119.3 4.1 51 1707-1760 297-347 (1006)
135 PRK12778 putative bifunctional 98.1 2.3E-06 5E-11 112.7 4.5 52 1706-1760 293-345 (752)
136 cd04730 NPD_like 2-Nitropropan 98.1 3.4E-05 7.4E-10 87.6 12.8 102 1142-1262 93-194 (236)
137 COG0069 GltB Glutamate synthas 98.0 6.6E-05 1.4E-09 93.0 14.8 200 641-870 252-475 (485)
138 TIGR00737 nifR3_yhdG putative 98.0 8.8E-05 1.9E-09 88.7 15.2 106 1137-1258 116-227 (319)
139 PRK10415 tRNA-dihydrouridine s 98.0 0.00012 2.7E-09 87.7 16.3 107 1136-1258 117-229 (321)
140 cd02801 DUS_like_FMN Dihydrour 97.9 7.4E-05 1.6E-09 84.6 11.5 107 1136-1258 107-218 (231)
141 COG0121 Predicted glutamine am 97.9 0.00019 4.1E-09 83.4 14.9 72 284-358 34-114 (252)
142 PF14691 Fer4_20: Dihydroprymi 97.9 3.4E-06 7.4E-11 86.5 0.4 38 1720-1760 1-38 (111)
143 PF01645 Glu_synthase: Conserv 97.8 0.00025 5.4E-09 86.2 13.9 123 739-862 223-367 (368)
144 cd04722 TIM_phosphate_binding 97.7 0.0002 4.4E-09 77.0 11.2 102 1137-1254 98-200 (200)
145 PRK10550 tRNA-dihydrouridine s 97.7 0.00023 5E-09 85.2 12.2 107 1136-1258 115-229 (312)
146 TIGR00742 yjbN tRNA dihydrouri 97.7 0.00024 5.2E-09 85.2 12.0 112 1136-1258 107-228 (318)
147 cd02803 OYE_like_FMN_family Ol 97.7 0.00028 6.1E-09 84.3 12.4 109 1140-1258 194-316 (327)
148 PRK01130 N-acetylmannosamine-6 97.7 0.00015 3.3E-09 82.2 9.4 102 1138-1257 105-206 (221)
149 COG0042 tRNA-dihydrouridine sy 97.6 0.00065 1.4E-08 81.7 14.1 110 1135-1258 118-233 (323)
150 PRK11815 tRNA-dihydrouridine s 97.6 0.00045 9.8E-09 83.4 12.2 114 1136-1258 117-238 (333)
151 cd04729 NanE N-acetylmannosami 97.5 0.00035 7.5E-09 79.2 10.3 102 1139-1258 110-211 (219)
152 PF04898 Glu_syn_central: Glut 97.5 0.00035 7.6E-09 82.2 10.2 127 1170-1323 148-276 (287)
153 PF04131 NanE: Putative N-acet 97.5 0.00023 5E-09 78.9 8.1 96 1138-1256 79-176 (192)
154 PF01207 Dus: Dihydrouridine s 97.4 0.00055 1.2E-08 81.8 9.2 108 1135-1258 105-218 (309)
155 cd04735 OYE_like_4_FMN Old yel 97.3 0.0019 4.2E-08 78.6 12.9 108 1140-1258 197-318 (353)
156 cd02931 ER_like_FMN Enoate red 97.2 0.0024 5.2E-08 78.6 12.3 110 1140-1258 204-340 (382)
157 PRK00507 deoxyribose-phosphate 97.1 0.0043 9.3E-08 71.2 12.4 102 1137-1258 105-213 (221)
158 cd02808 GltS_FMN Glutamate syn 97.1 0.0037 8E-08 77.2 12.4 132 735-867 229-383 (392)
159 cd02933 OYE_like_FMN Old yello 97.0 0.0037 8E-08 75.8 11.7 102 1140-1258 205-319 (338)
160 PRK13523 NADPH dehydrogenase N 97.0 0.0037 8.1E-08 75.7 11.3 106 1140-1258 195-310 (337)
161 KOG2335 tRNA-dihydrouridine sy 97.0 0.013 2.8E-07 70.5 15.1 171 1136-1321 125-309 (358)
162 cd04734 OYE_like_3_FMN Old yel 96.9 0.0071 1.5E-07 73.5 12.7 110 1140-1258 194-320 (343)
163 cd04728 ThiG Thiazole synthase 96.9 0.0048 1E-07 71.2 10.1 101 1139-1257 108-208 (248)
164 PRK00208 thiG thiazole synthas 96.8 0.005 1.1E-07 71.1 9.9 103 1137-1257 106-208 (250)
165 cd04733 OYE_like_2_FMN Old yel 96.8 0.0095 2.1E-07 72.1 12.2 109 1140-1258 202-327 (338)
166 cd02932 OYE_YqiM_FMN Old yello 96.8 0.0084 1.8E-07 72.5 11.7 108 1139-1258 206-325 (336)
167 cd04727 pdxS PdxS is a subunit 96.6 0.0087 1.9E-07 70.3 10.1 103 1140-1258 100-230 (283)
168 TIGR00343 pyridoxal 5'-phospha 96.6 0.0082 1.8E-07 70.5 9.8 102 1141-1258 103-233 (287)
169 PRK13984 putative oxidoreducta 96.6 0.0015 3.3E-08 84.4 4.0 55 1701-1760 145-199 (604)
170 PRK13125 trpA tryptophan synth 96.5 0.06 1.3E-06 62.6 15.9 106 1137-1259 115-220 (244)
171 cd02930 DCR_FMN 2,4-dienoyl-Co 96.5 0.016 3.5E-07 70.6 11.7 109 1139-1258 189-311 (353)
172 TIGR00262 trpA tryptophan synt 96.4 0.028 6.1E-07 65.9 12.9 37 1224-1260 198-234 (256)
173 PF04481 DUF561: Protein of un 96.4 0.015 3.3E-07 65.7 9.9 110 1135-1255 100-216 (242)
174 COG0274 DeoC Deoxyribose-phosp 96.4 0.013 2.8E-07 66.9 9.3 102 1136-1256 107-215 (228)
175 TIGR03572 WbuZ glycosyl amidat 96.4 0.023 4.9E-07 65.1 11.5 74 1167-1256 156-230 (232)
176 COG1902 NemA NADH:flavin oxido 96.3 0.025 5.3E-07 69.4 12.1 109 1140-1258 202-323 (363)
177 cd04732 HisA HisA. Phosphorib 96.3 0.028 6E-07 64.1 11.9 77 1166-1258 148-224 (234)
178 PRK05848 nicotinate-nucleotide 96.3 0.025 5.4E-07 66.9 11.1 95 1138-1257 166-261 (273)
179 TIGR00007 phosphoribosylformim 96.2 0.027 5.9E-07 64.3 11.1 75 1167-1258 148-223 (230)
180 cd04731 HisF The cyclase subun 96.2 0.021 4.6E-07 65.8 9.9 76 1167-1258 152-228 (243)
181 PRK08385 nicotinate-nucleotide 96.2 0.038 8.3E-07 65.5 12.0 95 1139-1256 168-262 (278)
182 PRK13585 1-(5-phosphoribosyl)- 96.1 0.038 8.2E-07 63.5 11.6 76 1166-1258 151-227 (241)
183 PF05690 ThiG: Thiazole biosyn 96.1 0.01 2.3E-07 67.9 6.8 76 1166-1257 133-208 (247)
184 CHL00162 thiG thiamin biosynth 96.1 0.01 2.2E-07 68.6 6.7 76 1167-1258 148-223 (267)
185 cd00331 IGPS Indole-3-glycerol 96.0 0.062 1.3E-06 61.0 12.4 100 1137-1258 107-206 (217)
186 COG3010 NanE Putative N-acetyl 96.0 0.021 4.6E-07 64.1 8.2 93 1139-1255 115-211 (229)
187 cd02929 TMADH_HD_FMN Trimethyl 95.9 0.041 8.9E-07 67.7 11.3 109 1140-1258 203-324 (370)
188 PRK12814 putative NADPH-depend 95.9 0.0052 1.1E-07 80.5 3.6 44 1706-1750 532-575 (652)
189 cd02922 FCB2_FMN Flavocytochro 95.9 0.12 2.5E-06 63.3 14.7 142 688-868 197-341 (344)
190 PRK07695 transcriptional regul 95.9 0.042 9.1E-07 61.7 10.3 96 1145-1258 87-182 (201)
191 PRK00748 1-(5-phosphoribosyl)- 95.9 0.038 8.3E-07 63.0 10.1 75 1167-1258 149-225 (233)
192 TIGR01304 IMP_DH_rel_2 IMP deh 95.9 0.055 1.2E-06 66.6 11.9 98 1136-1255 117-218 (369)
193 PRK13111 trpA tryptophan synth 95.8 0.22 4.9E-06 58.6 16.1 36 1224-1260 200-235 (258)
194 TIGR00735 hisF imidazoleglycer 95.8 0.062 1.3E-06 62.7 11.5 77 1166-1258 157-234 (254)
195 PRK14024 phosphoribosyl isomer 95.7 0.049 1.1E-06 63.2 10.4 76 1167-1258 149-227 (241)
196 TIGR00126 deoC deoxyribose-pho 95.7 0.094 2E-06 60.0 12.3 99 1137-1255 101-206 (211)
197 KOG0399 Glutamate synthase [Am 95.7 0.033 7.2E-07 73.7 9.5 104 1429-1546 1391-1507(2142)
198 cd04747 OYE_like_5_FMN Old yel 95.7 0.065 1.4E-06 65.8 11.7 104 1140-1258 197-333 (361)
199 cd00959 DeoC 2-deoxyribose-5-p 95.7 0.073 1.6E-06 60.2 11.2 95 1138-1252 101-202 (203)
200 KOG1799 Dihydropyrimidine dehy 95.7 0.011 2.3E-07 70.2 4.6 145 1136-1325 257-422 (471)
201 PRK01033 imidazole glycerol ph 95.7 0.059 1.3E-06 63.2 10.8 76 1166-1258 154-231 (258)
202 PRK04180 pyridoxal biosynthesi 95.7 0.048 1E-06 64.5 9.9 102 1141-1258 110-239 (293)
203 PRK08255 salicylyl-CoA 5-hydro 95.7 0.056 1.2E-06 72.3 11.8 108 1139-1258 603-722 (765)
204 PRK14024 phosphoribosyl isomer 95.5 0.059 1.3E-06 62.5 9.8 77 1165-1258 33-109 (241)
205 TIGR00735 hisF imidazoleglycer 95.3 0.059 1.3E-06 62.9 8.8 78 1165-1258 31-108 (254)
206 PRK12771 putative glutamate sy 95.1 0.012 2.6E-07 75.9 2.9 56 1701-1759 464-523 (564)
207 cd04726 KGPDC_HPS 3-Keto-L-gul 95.1 0.16 3.6E-06 56.6 11.4 100 1138-1257 90-190 (202)
208 PRK05283 deoxyribose-phosphate 95.1 0.13 2.8E-06 60.4 10.8 101 1137-1251 114-222 (257)
209 PRK08649 inosine 5-monophospha 95.0 0.1 2.3E-06 64.2 10.4 187 990-1255 24-217 (368)
210 PLN02411 12-oxophytodienoate r 95.0 0.17 3.6E-06 62.9 12.1 109 1140-1258 218-347 (391)
211 cd04731 HisF The cyclase subun 95.0 0.077 1.7E-06 61.2 8.6 77 1165-1258 28-105 (243)
212 PRK02083 imidazole glycerol ph 94.9 0.091 2E-06 61.2 9.0 77 1165-1258 31-108 (253)
213 TIGR03128 RuMP_HxlA 3-hexulose 94.9 0.23 5.1E-06 55.7 12.0 101 1138-1257 89-190 (206)
214 PF00724 Oxidored_FMN: NADH:fl 94.9 0.038 8.2E-07 67.2 6.1 111 1140-1258 202-326 (341)
215 PRK00278 trpC indole-3-glycero 94.9 0.22 4.9E-06 58.6 12.2 100 1137-1258 146-245 (260)
216 PRK10605 N-ethylmaleimide redu 94.8 0.21 4.4E-06 61.6 12.1 101 1140-1258 212-326 (362)
217 PRK02083 imidazole glycerol ph 94.7 0.21 4.5E-06 58.2 11.4 75 1167-1258 156-232 (253)
218 PLN02591 tryptophan synthase 94.6 0.9 1.9E-05 53.5 16.0 49 1209-1260 177-225 (250)
219 cd04724 Tryptophan_synthase_al 94.6 0.31 6.8E-06 56.7 12.3 108 1137-1260 115-222 (242)
220 COG0067 GltB Glutamate synthas 94.5 0.071 1.5E-06 65.2 7.2 95 383-495 244-344 (371)
221 cd03332 LMO_FMN L-Lactate 2-mo 94.4 0.74 1.6E-05 57.2 15.6 140 688-869 237-379 (383)
222 COG4981 Enoyl reductase domain 94.3 0.33 7.2E-06 61.0 11.9 226 1010-1284 36-300 (717)
223 PRK04302 triosephosphate isome 94.3 0.29 6.3E-06 56.2 11.0 107 1137-1258 100-207 (223)
224 PRK07028 bifunctional hexulose 94.2 0.23 4.9E-06 62.3 10.8 151 1139-1323 95-246 (430)
225 PRK07428 nicotinate-nucleotide 94.1 0.35 7.6E-06 57.9 11.6 93 1140-1257 182-275 (288)
226 PRK13587 1-(5-phosphoribosyl)- 94.1 0.35 7.7E-06 56.1 11.4 75 1167-1258 151-226 (234)
227 cd04737 LOX_like_FMN L-Lactate 94.1 0.78 1.7E-05 56.5 14.8 142 688-872 205-350 (351)
228 PF01729 QRPTase_C: Quinolinat 94.1 0.26 5.6E-06 54.7 9.8 94 1139-1257 65-159 (169)
229 PRK07896 nicotinate-nucleotide 94.0 0.35 7.6E-06 57.9 11.3 93 1139-1256 185-277 (289)
230 cd04723 HisA_HisF Phosphoribos 94.0 0.42 9E-06 55.4 11.5 75 1166-1258 148-223 (233)
231 cd01571 NAPRTase_B Nicotinate 93.9 0.43 9.3E-06 57.5 12.0 104 1139-1257 169-277 (302)
232 PLN02493 probable peroxisomal 93.8 0.84 1.8E-05 56.4 14.3 140 688-869 208-350 (367)
233 PRK11840 bifunctional sulfur c 93.7 0.4 8.7E-06 57.9 11.0 75 1167-1257 208-282 (326)
234 PRK00043 thiE thiamine-phospha 93.6 0.2 4.2E-06 56.2 7.9 75 1170-1257 117-192 (212)
235 PRK00748 1-(5-phosphoribosyl)- 93.3 0.31 6.7E-06 55.8 9.0 77 1165-1258 31-108 (233)
236 cd04732 HisA HisA. Phosphorib 93.3 0.28 6E-06 56.1 8.5 78 1165-1258 30-107 (234)
237 PRK08883 ribulose-phosphate 3- 93.2 0.82 1.8E-05 52.8 12.2 106 1139-1257 94-199 (220)
238 cd00945 Aldolase_Class_I Class 93.2 1 2.2E-05 49.4 12.5 100 1137-1253 96-201 (201)
239 PLN02979 glycolate oxidase 93.1 1.3 2.7E-05 54.7 14.2 141 688-870 207-350 (366)
240 PF00977 His_biosynth: Histidi 93.1 0.53 1.2E-05 54.4 10.6 75 1166-1257 149-224 (229)
241 CHL00200 trpA tryptophan synth 93.0 3 6.4E-05 49.6 16.6 109 1137-1260 130-238 (263)
242 cd02809 alpha_hydroxyacid_oxid 92.8 1 2.2E-05 54.1 12.7 112 734-869 184-298 (299)
243 PRK05437 isopentenyl pyrophosp 92.8 0.99 2.1E-05 55.5 12.8 115 734-873 201-336 (352)
244 PRK05567 inosine 5'-monophosph 92.8 0.82 1.8E-05 58.5 12.5 68 1168-1254 231-298 (486)
245 PRK05742 nicotinate-nucleotide 92.7 0.62 1.3E-05 55.6 10.5 87 1141-1255 177-263 (277)
246 cd00958 DhnA Class I fructose- 92.7 0.55 1.2E-05 54.0 9.9 65 1170-1258 149-219 (235)
247 TIGR01303 IMP_DH_rel_1 IMP deh 92.7 1.5 3.2E-05 56.1 14.5 70 1166-1254 226-295 (475)
248 COG0159 TrpA Tryptophan syntha 92.7 2.5 5.5E-05 50.1 15.2 112 1136-1260 77-240 (265)
249 PRK06096 molybdenum transport 92.6 0.69 1.5E-05 55.3 10.7 94 1137-1255 173-266 (284)
250 PRK11197 lldD L-lactate dehydr 92.5 2.5 5.5E-05 52.6 15.7 139 688-868 229-370 (381)
251 PLN02535 glycolate oxidase 92.3 2.1 4.6E-05 53.0 14.7 143 688-872 207-352 (364)
252 cd00564 TMP_TenI Thiamine mono 92.2 0.38 8.2E-06 52.7 7.5 75 1169-1257 107-182 (196)
253 TIGR01334 modD putative molybd 92.2 0.83 1.8E-05 54.5 10.8 93 1138-1255 173-265 (277)
254 TIGR01302 IMP_dehydrog inosine 92.2 1.4 3.1E-05 55.8 13.5 67 1168-1253 227-293 (450)
255 PRK09016 quinolinate phosphori 92.1 0.9 2E-05 54.6 10.9 89 1139-1255 194-282 (296)
256 PLN02334 ribulose-phosphate 3- 92.1 1.5 3.2E-05 50.6 12.5 102 1140-1257 104-206 (229)
257 PF01070 FMN_dh: FMN-dependent 92.0 3.5 7.5E-05 51.0 16.1 225 597-870 120-352 (356)
258 TIGR00734 hisAF_rel hisA/hisF 91.9 0.51 1.1E-05 54.4 8.4 45 1206-1257 173-217 (221)
259 PF00290 Trp_syntA: Tryptophan 91.9 2.6 5.7E-05 50.0 14.2 111 1137-1260 71-233 (259)
260 COG2022 ThiG Uncharacterized e 91.8 0.35 7.5E-06 55.7 6.7 77 1166-1258 140-216 (262)
261 cd01568 QPRTase_NadC Quinolina 91.8 1 2.2E-05 53.5 10.9 88 1142-1255 169-257 (269)
262 PRK13587 1-(5-phosphoribosyl)- 91.7 0.59 1.3E-05 54.3 8.6 72 1168-1258 35-110 (234)
263 cd01573 modD_like ModD; Quinol 91.4 1.3 2.9E-05 52.7 11.2 90 1141-1255 171-260 (272)
264 PF01791 DeoC: DeoC/LacD famil 91.3 0.97 2.1E-05 52.3 9.9 104 1137-1255 111-232 (236)
265 TIGR00078 nadC nicotinate-nucl 91.2 1.3 2.7E-05 52.7 10.7 88 1140-1255 164-252 (265)
266 PRK06543 nicotinate-nucleotide 91.1 1.5 3.3E-05 52.4 11.3 97 1131-1255 168-267 (281)
267 cd01572 QPRTase Quinolinate ph 91.0 1.4 3E-05 52.5 10.9 87 1141-1255 169-256 (268)
268 cd00429 RPE Ribulose-5-phospha 90.8 2.8 6E-05 46.9 12.6 103 1140-1258 94-199 (211)
269 PRK06559 nicotinate-nucleotide 90.6 1.6 3.5E-05 52.4 10.9 89 1139-1255 182-271 (290)
270 PRK07226 fructose-bisphosphate 90.4 1.8 3.8E-05 51.2 11.1 65 1170-1258 166-236 (267)
271 TIGR01949 AroFGH_arch predicte 90.2 1.6 3.5E-05 51.3 10.5 93 1142-1258 123-232 (258)
272 PRK06106 nicotinate-nucleotide 90.2 1.9 4.2E-05 51.6 11.1 89 1139-1255 179-268 (281)
273 PRK13585 1-(5-phosphoribosyl)- 90.2 1 2.3E-05 51.9 8.8 77 1165-1257 33-109 (241)
274 TIGR02708 L_lactate_ox L-lacta 90.2 5.8 0.00013 49.3 15.5 144 688-873 212-358 (367)
275 TIGR01163 rpe ribulose-phospha 90.1 3.4 7.4E-05 46.3 12.6 105 1139-1257 92-197 (210)
276 cd00405 PRAI Phosphoribosylant 90.1 1.7 3.6E-05 49.2 10.1 67 1172-1258 115-186 (203)
277 TIGR01182 eda Entner-Doudoroff 90.0 1.3 2.9E-05 50.6 9.3 81 1139-1250 45-125 (204)
278 TIGR02129 hisA_euk phosphoribo 90.0 0.68 1.5E-05 54.5 7.1 69 1167-1258 41-109 (253)
279 PRK07188 nicotinate phosphorib 89.8 2.2 4.9E-05 52.5 11.6 116 1139-1257 188-314 (352)
280 PRK06843 inosine 5-monophospha 89.7 1.8 4E-05 54.1 10.9 67 1168-1253 156-222 (404)
281 cd04723 HisA_HisF Phosphoribos 89.6 0.8 1.7E-05 53.1 7.2 72 1166-1257 37-111 (233)
282 COG0157 NadC Nicotinate-nucleo 89.3 1.8 3.8E-05 51.5 9.7 92 1139-1255 173-264 (280)
283 PF00478 IMPDH: IMP dehydrogen 89.2 3 6.6E-05 51.4 12.0 100 1135-1253 70-177 (352)
284 PRK09140 2-dehydro-3-deoxy-6-p 89.1 1.9 4.2E-05 49.3 9.6 34 1224-1258 151-184 (206)
285 PRK01033 imidazole glycerol ph 89.0 1.5 3.2E-05 51.7 8.9 76 1165-1257 31-107 (258)
286 cd00452 KDPG_aldolase KDPG and 89.0 1.5 3.2E-05 49.2 8.6 33 1224-1257 143-175 (190)
287 COG0106 HisA Phosphoribosylfor 89.0 3.1 6.7E-05 48.7 11.2 76 1166-1258 149-226 (241)
288 COG0107 HisF Imidazoleglycerol 88.9 1.7 3.7E-05 50.4 8.9 71 1168-1258 34-108 (256)
289 TIGR03572 WbuZ glycosyl amidat 88.9 1.4 3E-05 50.7 8.5 76 1166-1258 32-108 (232)
290 PRK06978 nicotinate-nucleotide 88.9 2.7 5.9E-05 50.6 11.0 87 1141-1255 193-279 (294)
291 PRK08072 nicotinate-nucleotide 88.8 2.8 6.2E-05 50.1 11.1 88 1140-1255 174-262 (277)
292 cd00956 Transaldolase_FSA Tran 88.7 3.3 7.2E-05 47.6 11.2 78 1170-1260 115-192 (211)
293 TIGR00640 acid_CoA_mut_C methy 88.6 2.4 5.1E-05 45.4 9.3 74 1165-1255 41-115 (132)
294 PRK14114 1-(5-phosphoribosyl)- 88.4 1.2 2.6E-05 52.1 7.6 74 1167-1257 147-227 (241)
295 PRK04128 1-(5-phosphoribosyl)- 88.2 1.3 2.9E-05 51.3 7.7 34 1224-1257 73-106 (228)
296 TIGR00693 thiE thiamine-phosph 88.2 1.3 2.8E-05 49.5 7.4 76 1171-1258 110-185 (196)
297 PF00977 His_biosynth: Histidi 88.1 1 2.2E-05 52.2 6.7 75 1165-1258 30-107 (229)
298 TIGR00007 phosphoribosylformim 88.1 1.5 3.3E-05 50.2 8.1 74 1166-1258 30-106 (230)
299 cd04736 MDH_FMN Mandelate dehy 88.0 8.4 0.00018 47.9 14.7 136 688-867 220-358 (361)
300 PF00218 IGPS: Indole-3-glycer 87.9 1.4 3.1E-05 52.0 7.8 102 1136-1259 143-244 (254)
301 PRK05581 ribulose-phosphate 3- 87.9 4.8 0.0001 45.6 11.9 106 1139-1258 97-203 (220)
302 PRK09427 bifunctional indole-3 87.8 3.8 8.2E-05 52.2 11.9 100 1137-1259 145-244 (454)
303 PRK04169 geranylgeranylglycery 87.4 2.1 4.5E-05 50.0 8.6 65 1175-1257 152-217 (232)
304 cd02812 PcrB_like PcrB_like pr 87.3 1.9 4.1E-05 49.9 8.2 69 1169-1257 140-208 (219)
305 TIGR02151 IPP_isom_2 isopenten 87.2 6.6 0.00014 48.1 13.2 117 734-873 194-329 (333)
306 PRK13957 indole-3-glycerol-pho 87.1 4.7 0.0001 47.6 11.4 102 1135-1259 135-236 (247)
307 cd00381 IMPDH IMPDH: The catal 87.0 5.2 0.00011 48.8 12.2 95 1135-1253 67-163 (325)
308 PRK13586 1-(5-phosphoribosyl)- 86.9 1.5 3.2E-05 51.1 7.1 72 1168-1257 150-222 (232)
309 TIGR01919 hisA-trpF 1-(5-phosp 86.9 1.5 3.2E-05 51.4 7.2 73 1168-1257 153-229 (243)
310 PF01884 PcrB: PcrB family; I 86.8 2.1 4.6E-05 49.9 8.2 65 1175-1257 151-215 (230)
311 PRK13802 bifunctional indole-3 86.6 4 8.7E-05 54.4 11.6 101 1137-1259 146-246 (695)
312 PRK13586 1-(5-phosphoribosyl)- 86.4 1.9 4.1E-05 50.2 7.7 75 1167-1258 33-107 (232)
313 TIGR01919 hisA-trpF 1-(5-phosp 86.3 2.3 5E-05 49.9 8.4 72 1169-1257 36-107 (243)
314 TIGR01305 GMP_reduct_1 guanosi 86.3 4.2 9.2E-05 49.7 10.7 98 1132-1253 75-178 (343)
315 PRK08662 nicotinate phosphorib 86.3 5.9 0.00013 48.8 12.1 104 1141-1259 187-294 (343)
316 PTZ00170 D-ribulose-5-phosphat 86.1 3.1 6.7E-05 48.3 9.2 110 1142-1256 54-204 (228)
317 PRK09722 allulose-6-phosphate 85.9 7.7 0.00017 45.3 12.2 106 1139-1258 96-202 (229)
318 PLN02716 nicotinate-nucleotide 85.6 4.2 9.1E-05 49.3 10.1 99 1142-1255 188-292 (308)
319 TIGR00875 fsa_talC_mipB fructo 85.5 6.1 0.00013 45.7 11.1 76 1172-1260 117-192 (213)
320 PLN02274 inosine-5'-monophosph 85.2 2.1 4.5E-05 55.2 7.9 66 980-1052 21-92 (505)
321 COG0134 TrpC Indole-3-glycerol 85.2 7.2 0.00016 46.2 11.5 100 1138-1259 143-242 (254)
322 PRK08227 autoinducer 2 aldolas 85.1 3.8 8.3E-05 48.7 9.4 91 1136-1255 125-228 (264)
323 cd04726 KGPDC_HPS 3-Keto-L-gul 85.0 6.8 0.00015 43.8 11.0 91 1142-1253 42-133 (202)
324 PRK14114 1-(5-phosphoribosyl)- 84.9 3.1 6.8E-05 48.8 8.5 72 1166-1257 32-106 (241)
325 cd02811 IDI-2_FMN Isopentenyl- 84.5 6.9 0.00015 47.8 11.5 110 734-869 193-325 (326)
326 TIGR00734 hisAF_rel hisA/hisF 84.3 2.9 6.4E-05 48.3 7.9 69 1167-1257 39-112 (221)
327 TIGR01769 GGGP geranylgeranylg 84.2 4.2 9.1E-05 46.7 8.9 67 1169-1253 139-205 (205)
328 cd02072 Glm_B12_BD B12 binding 83.9 7.9 0.00017 41.5 10.2 70 1165-1250 38-112 (128)
329 PRK02615 thiamine-phosphate py 83.8 2.9 6.3E-05 51.5 7.9 75 1170-1258 253-327 (347)
330 COG0214 SNZ1 Pyridoxine biosyn 83.6 1.3 2.9E-05 51.0 4.6 51 1202-1258 192-242 (296)
331 KOG2550 IMP dehydrogenase/GMP 83.5 9 0.00019 47.7 11.6 64 1173-1255 259-324 (503)
332 PRK13307 bifunctional formalde 83.3 7.4 0.00016 48.8 11.2 107 1142-1256 215-361 (391)
333 COG0106 HisA Phosphoribosylfor 83.1 4.1 8.8E-05 47.8 8.3 70 1168-1256 35-107 (241)
334 PRK04128 1-(5-phosphoribosyl)- 82.9 0.92 2E-05 52.6 3.1 35 1224-1258 182-216 (228)
335 TIGR00259 thylakoid_BtpA membr 82.6 5.4 0.00012 47.4 9.2 74 1164-1257 157-231 (257)
336 PTZ00314 inosine-5'-monophosph 82.4 5.6 0.00012 51.3 10.0 66 980-1052 17-88 (495)
337 PRK08091 ribulose-phosphate 3- 82.0 15 0.00032 43.1 12.3 105 1139-1255 104-209 (228)
338 COG0107 HisF Imidazoleglycerol 81.5 5.4 0.00012 46.5 8.3 71 1168-1255 159-231 (256)
339 PLN02460 indole-3-glycerol-pho 81.4 11 0.00024 46.3 11.5 103 1137-1259 216-323 (338)
340 cd00331 IGPS Indole-3-glycerol 81.2 1.8 4E-05 49.2 4.7 72 1165-1255 32-103 (217)
341 PRK07455 keto-hydroxyglutarate 81.0 2.1 4.5E-05 48.2 4.9 67 1170-1257 118-184 (187)
342 PRK06512 thiamine-phosphate py 80.8 3.9 8.6E-05 47.3 7.2 73 1170-1258 124-197 (221)
343 PRK12653 fructose-6-phosphate 80.8 18 0.0004 42.1 12.5 75 1173-1260 120-194 (220)
344 PRK01362 putative translaldola 80.5 13 0.00029 43.0 11.2 76 1172-1260 117-192 (214)
345 cd00516 PRTase_typeII Phosphor 80.3 9.6 0.00021 45.2 10.4 101 1142-1257 170-271 (281)
346 PLN02446 (5-phosphoribosyl)-5- 80.1 4.5 9.7E-05 48.1 7.4 71 1167-1258 46-116 (262)
347 PRK06015 keto-hydroxyglutarate 80.0 6.9 0.00015 44.9 8.6 80 1140-1250 42-121 (201)
348 PRK08745 ribulose-phosphate 3- 78.8 21 0.00046 41.6 12.2 103 1139-1255 98-201 (223)
349 TIGR01768 GGGP-family geranylg 78.7 8.1 0.00018 45.0 8.8 65 1176-1257 148-212 (223)
350 PRK05096 guanosine 5'-monophos 78.1 13 0.00028 45.7 10.6 98 1132-1253 76-179 (346)
351 TIGR01306 GMP_reduct_2 guanosi 77.4 12 0.00027 45.8 10.2 96 1135-1253 66-165 (321)
352 PRK12655 fructose-6-phosphate 76.4 27 0.00059 40.7 12.2 75 1173-1260 120-194 (220)
353 PRK05718 keto-hydroxyglutarate 76.4 11 0.00024 43.6 8.9 82 1140-1252 53-134 (212)
354 PRK06552 keto-hydroxyglutarate 76.2 4.8 0.0001 46.4 6.1 68 1168-1257 120-187 (213)
355 PRK14057 epimerase; Provisiona 76.0 22 0.00049 42.3 11.5 106 1139-1256 111-224 (254)
356 TIGR01859 fruc_bis_ald_ fructo 75.9 25 0.00055 42.3 12.1 117 1171-1316 159-279 (282)
357 COG0269 SgbH 3-hexulose-6-phos 75.7 21 0.00046 41.4 10.8 93 1142-1255 45-139 (217)
358 PF02581 TMP-TENI: Thiamine mo 75.4 6.3 0.00014 43.9 6.5 76 1165-1255 104-179 (180)
359 PRK06852 aldolase; Validated 74.7 19 0.00041 43.9 10.6 98 1136-1255 152-267 (304)
360 PRK08005 epimerase; Validated 74.5 27 0.00058 40.5 11.4 100 1139-1256 94-194 (210)
361 PF01081 Aldolase: KDPG and KH 74.5 5.5 0.00012 45.5 5.9 80 1140-1250 46-125 (196)
362 TIGR02313 HpaI-NOT-DapA 2,4-di 74.3 15 0.00032 44.3 9.7 90 1171-1305 28-124 (294)
363 KOG3111 D-ribulose-5-phosphate 74.3 31 0.00068 39.5 11.3 101 1138-1259 99-203 (224)
364 PLN02417 dihydrodipicolinate s 74.3 15 0.00034 43.8 9.8 70 1172-1256 30-106 (280)
365 PF12481 DUF3700: Aluminium in 73.3 3.1 6.8E-05 47.9 3.5 104 400-515 85-194 (228)
366 PRK06388 amidophosphoribosyltr 73.2 4.5 9.8E-05 51.8 5.3 39 111-162 16-54 (474)
367 cd00951 KDGDH 5-dehydro-4-deox 72.2 16 0.00035 43.8 9.4 70 1171-1256 28-104 (289)
368 PLN02617 imidazole glycerol ph 72.0 20 0.00042 46.9 10.6 76 1165-1257 439-516 (538)
369 PF00682 HMGL-like: HMGL-like 71.8 18 0.00039 41.7 9.3 59 1135-1193 163-224 (237)
370 PF04131 NanE: Putative N-acet 71.7 19 0.0004 41.2 9.0 86 1144-1251 24-117 (192)
371 PLN02446 (5-phosphoribosyl)-5- 71.5 11 0.00023 45.1 7.4 72 1168-1256 167-241 (262)
372 TIGR03128 RuMP_HxlA 3-hexulose 71.5 24 0.00051 39.8 10.0 90 1141-1254 40-134 (206)
373 PF00834 Ribul_P_3_epim: Ribul 71.0 8.5 0.00018 44.1 6.3 107 1138-1257 92-198 (201)
374 COG2185 Sbm Methylmalonyl-CoA 70.4 15 0.00033 40.1 7.7 67 1167-1250 53-119 (143)
375 KOG0573 Asparagine synthase [A 69.7 14 0.0003 46.7 8.0 56 450-511 114-171 (520)
376 cd02071 MM_CoA_mut_B12_BD meth 69.6 26 0.00057 36.7 9.2 71 1163-1250 36-106 (122)
377 COG1304 idi Isopentenyl diphos 68.9 38 0.00082 42.3 11.7 148 685-874 199-349 (360)
378 PRK03620 5-dehydro-4-deoxygluc 68.6 23 0.0005 42.8 9.7 87 1172-1304 36-129 (303)
379 PRK06552 keto-hydroxyglutarate 68.4 18 0.0004 41.8 8.4 82 1140-1252 51-135 (213)
380 PRK07272 amidophosphoribosyltr 68.3 5.1 0.00011 51.5 4.3 40 110-162 7-46 (484)
381 PLN02617 imidazole glycerol ph 68.2 14 0.00031 48.2 8.3 78 1168-1258 271-359 (538)
382 TIGR01501 MthylAspMutase methy 67.9 34 0.00074 37.1 9.7 71 1165-1251 40-115 (134)
383 cd07940 DRE_TIM_IPMS 2-isoprop 67.6 23 0.00049 42.0 9.2 57 1135-1191 169-230 (268)
384 PF03437 BtpA: BtpA family; I 67.4 17 0.00037 43.3 8.0 73 1165-1258 159-232 (254)
385 PLN02623 pyruvate kinase 66.7 68 0.0015 42.4 13.7 106 1135-1255 301-419 (581)
386 PRK08341 amidophosphoribosyltr 66.7 4.8 0.0001 51.2 3.5 37 112-162 2-38 (442)
387 PRK07114 keto-hydroxyglutarate 66.6 28 0.00061 40.7 9.4 79 1141-1250 58-136 (222)
388 cd00408 DHDPS-like Dihydrodipi 66.6 31 0.00067 40.9 10.1 72 1172-1258 26-104 (281)
389 PRK06801 hypothetical protein; 66.5 47 0.001 40.3 11.5 72 1173-1260 165-240 (286)
390 PRK08999 hypothetical protein; 66.4 11 0.00025 45.1 6.5 75 1165-1255 235-310 (312)
391 cd00952 CHBPH_aldolase Trans-o 66.4 25 0.00053 42.8 9.3 89 1171-1304 36-131 (309)
392 TIGR01037 pyrD_sub1_fam dihydr 66.2 48 0.001 39.8 11.7 65 782-871 234-298 (300)
393 COG0352 ThiE Thiamine monophos 66.1 19 0.00041 41.7 7.9 77 1169-1259 116-192 (211)
394 PF03961 DUF342: Protein of un 65.6 87 0.0019 40.1 14.3 55 1499-1561 247-306 (451)
395 cd00377 ICL_PEPM Members of th 65.5 49 0.0011 39.0 11.2 120 1130-1253 47-180 (243)
396 cd03174 DRE_TIM_metallolyase D 65.2 26 0.00057 40.7 9.0 58 1135-1192 172-232 (265)
397 PRK12656 fructose-6-phosphate 64.3 59 0.0013 38.1 11.4 77 1171-1260 120-196 (222)
398 TIGR00683 nanA N-acetylneurami 64.0 32 0.0007 41.4 9.6 73 1172-1256 29-106 (290)
399 PRK07631 amidophosphoribosyltr 63.2 6.7 0.00014 50.4 3.9 39 111-162 8-46 (475)
400 PRK06781 amidophosphoribosyltr 62.9 6.5 0.00014 50.4 3.8 39 111-162 8-46 (471)
401 PRK13957 indole-3-glycerol-pho 62.4 13 0.00028 44.0 5.7 68 1165-1251 62-129 (247)
402 PRK07349 amidophosphoribosyltr 61.5 7.1 0.00015 50.4 3.7 40 111-162 30-69 (500)
403 PRK04147 N-acetylneuraminate l 61.4 38 0.00083 40.7 9.6 70 1172-1256 32-109 (293)
404 PRK09123 amidophosphoribosyltr 61.2 8.4 0.00018 49.5 4.3 41 109-162 16-56 (479)
405 TIGR02134 transald_staph trans 61.1 65 0.0014 38.1 11.1 102 1142-1259 103-205 (236)
406 TIGR02129 hisA_euk phosphoribo 60.8 23 0.00049 42.2 7.4 46 1206-1258 190-237 (253)
407 COG0329 DapA Dihydrodipicolina 60.8 31 0.00067 41.9 8.7 93 1171-1305 32-128 (299)
408 PRK09250 fructose-bisphosphate 60.7 41 0.0009 41.7 9.7 114 1136-1255 177-320 (348)
409 PRK05458 guanosine 5'-monophos 60.3 50 0.0011 40.7 10.4 95 1136-1253 70-168 (326)
410 PRK07565 dihydroorotate dehydr 60.2 95 0.0021 38.2 12.8 105 1137-1253 86-197 (334)
411 PLN02495 oxidoreductase, actin 60.1 51 0.0011 41.5 10.6 110 1136-1256 96-217 (385)
412 cd00714 GFAT Glutamine amidotr 59.9 7.7 0.00017 44.5 3.3 35 115-162 1-35 (215)
413 PRK05793 amidophosphoribosyltr 59.3 8.9 0.00019 49.2 4.0 41 111-162 11-51 (469)
414 cd07938 DRE_TIM_HMGL 3-hydroxy 59.2 48 0.001 39.8 9.8 51 1134-1184 174-225 (274)
415 PRK03512 thiamine-phosphate py 58.8 29 0.00062 40.1 7.6 76 1171-1258 116-191 (211)
416 cd07941 DRE_TIM_LeuA3 Desulfob 58.6 21 0.00046 42.5 6.8 60 1135-1194 177-239 (273)
417 TIGR00674 dapA dihydrodipicoli 58.1 53 0.0011 39.3 10.0 72 1171-1257 26-104 (285)
418 PRK09426 methylmalonyl-CoA mut 58.0 49 0.0011 44.9 10.6 69 1165-1250 621-689 (714)
419 COG0036 Rpe Pentose-5-phosphat 57.7 83 0.0018 36.9 10.9 102 1139-1255 97-199 (220)
420 cd00954 NAL N-Acetylneuraminic 57.6 52 0.0011 39.5 9.8 71 1171-1256 28-106 (288)
421 TIGR01859 fruc_bis_ald_ fructo 57.6 1.1E+02 0.0024 37.0 12.6 102 1137-1255 58-177 (282)
422 PRK06806 fructose-bisphosphate 57.1 94 0.002 37.6 11.8 73 1173-1260 162-237 (281)
423 TIGR01182 eda Entner-Doudoroff 57.1 29 0.00062 40.1 7.2 67 1168-1257 112-180 (204)
424 PTZ00295 glucosamine-fructose- 57.0 8.7 0.00019 51.0 3.6 39 111-162 21-59 (640)
425 KOG1606 Stationary phase-induc 56.9 14 0.0003 42.4 4.5 35 1224-1258 209-243 (296)
426 TIGR03151 enACPred_II putative 56.8 85 0.0018 38.3 11.5 90 1135-1252 45-135 (307)
427 COG0135 TrpF Phosphoribosylant 56.8 52 0.0011 38.2 9.2 92 1142-1255 88-185 (208)
428 PRK03903 transaldolase; Provis 56.8 1.6E+02 0.0034 35.8 13.4 56 1205-1260 158-217 (274)
429 PRK13305 sgbH 3-keto-L-gulonat 56.5 62 0.0013 37.8 9.8 90 1142-1254 45-137 (218)
430 TIGR03249 KdgD 5-dehydro-4-deo 56.5 50 0.0011 39.8 9.5 88 1171-1304 33-127 (296)
431 PRK12346 transaldolase A; Prov 55.8 1.1E+02 0.0024 37.7 12.2 78 1172-1260 165-251 (316)
432 cd07939 DRE_TIM_NifV Streptomy 55.7 48 0.001 39.2 9.0 57 1135-1192 165-224 (259)
433 KOG1268 Glucosamine 6-phosphat 54.9 10 0.00022 48.5 3.3 42 114-163 1-43 (670)
434 cd07943 DRE_TIM_HOA 4-hydroxy- 54.6 53 0.0011 38.9 9.1 59 1135-1193 167-228 (263)
435 TIGR01108 oadA oxaloacetate de 54.2 41 0.00089 44.5 8.8 59 1135-1194 175-236 (582)
436 PRK00278 trpC indole-3-glycero 53.9 89 0.0019 37.3 10.8 85 1144-1253 103-187 (260)
437 cd07944 DRE_TIM_HOA_like 4-hyd 53.0 50 0.0011 39.4 8.6 58 1135-1192 164-225 (266)
438 COG1908 FrhD Coenzyme F420-red 52.9 26 0.00057 37.3 5.4 36 1225-1274 33-68 (132)
439 cd04743 NPD_PKS 2-Nitropropane 52.8 84 0.0018 38.8 10.6 89 1135-1251 37-128 (320)
440 PRK07847 amidophosphoribosyltr 52.8 11 0.00023 49.0 3.3 40 111-162 20-59 (510)
441 PRK05692 hydroxymethylglutaryl 52.3 68 0.0015 38.8 9.6 54 1135-1188 181-237 (287)
442 TIGR02370 pyl_corrinoid methyl 51.8 60 0.0013 37.0 8.7 72 1162-1251 120-191 (197)
443 PRK02261 methylaspartate mutas 51.6 96 0.0021 33.6 9.7 73 1164-1252 41-118 (137)
444 KOG2334 tRNA-dihydrouridine sy 51.5 93 0.002 39.5 10.5 109 1135-1260 132-249 (477)
445 COG0800 Eda 2-keto-3-deoxy-6-p 51.4 38 0.00083 39.3 6.9 81 1139-1250 50-130 (211)
446 PTZ00300 pyruvate kinase; Prov 51.2 1.4E+02 0.0031 38.5 12.6 106 1134-1254 169-287 (454)
447 cd00950 DHDPS Dihydrodipicolin 50.9 82 0.0018 37.5 10.0 72 1171-1257 28-106 (284)
448 cd04730 NPD_like 2-Nitropropan 50.7 1.4E+02 0.003 34.4 11.5 90 1136-1253 37-129 (236)
449 PRK12330 oxaloacetate decarbox 50.5 35 0.00075 44.3 7.2 57 1135-1191 181-241 (499)
450 cd07945 DRE_TIM_CMS Leptospira 50.0 44 0.00096 40.2 7.6 59 1135-1193 173-234 (280)
451 cd00352 Gn_AT_II Glutamine ami 49.9 16 0.00034 41.0 3.7 39 115-162 1-39 (220)
452 cd00715 GPATase_N Glutamine am 49.8 13 0.00028 43.6 3.1 35 115-162 1-35 (252)
453 cd00439 Transaldolase Transald 49.6 1.3E+02 0.0027 36.0 11.1 118 1136-1260 98-241 (252)
454 cd04729 NanE N-acetylmannosami 49.5 84 0.0018 36.1 9.5 66 1169-1252 84-149 (219)
455 PRK05269 transaldolase B; Prov 49.1 1.7E+02 0.0037 36.2 12.3 54 1202-1260 199-252 (318)
456 PF00701 DHDPS: Dihydrodipicol 48.8 54 0.0012 39.2 8.1 88 1171-1303 29-123 (289)
457 PRK08525 amidophosphoribosyltr 48.5 15 0.00033 46.9 3.6 36 114-162 1-36 (445)
458 PRK01130 N-acetylmannosamine-6 48.3 1.1E+02 0.0024 35.2 10.2 92 1143-1253 47-146 (221)
459 PRK04180 pyridoxal biosynthesi 48.3 80 0.0017 38.4 9.2 81 1144-1251 66-146 (293)
460 TIGR03217 4OH_2_O_val_ald 4-hy 48.3 82 0.0018 38.9 9.7 81 1168-1254 28-108 (333)
461 COG1646 Predicted phosphate-bi 47.8 17 0.00036 42.6 3.4 32 1224-1255 191-222 (240)
462 cd07937 DRE_TIM_PC_TC_5S Pyruv 47.7 65 0.0014 38.6 8.5 57 1135-1192 175-234 (275)
463 PRK07315 fructose-bisphosphate 47.6 1.9E+02 0.0041 35.3 12.3 78 1170-1259 159-238 (293)
464 PRK12290 thiE thiamine-phospha 47.5 49 0.0011 42.3 7.6 86 1164-1258 308-397 (437)
465 PF09370 TIM-br_sig_trns: TIM- 47.2 22 0.00049 42.4 4.4 82 1143-1230 3-87 (268)
466 PLN02898 HMP-P kinase/thiamin- 47.2 39 0.00084 43.7 7.0 73 1170-1257 403-479 (502)
467 PRK07114 keto-hydroxyglutarate 46.9 46 0.001 38.9 6.9 68 1168-1256 123-191 (222)
468 PRK08195 4-hyroxy-2-oxovalerat 46.5 82 0.0018 39.0 9.3 58 1135-1192 170-231 (337)
469 COG0269 SgbH 3-hexulose-6-phos 46.1 2E+02 0.0042 33.9 11.4 102 1137-1256 92-195 (217)
470 cd02070 corrinoid_protein_B12- 45.6 1.9E+02 0.0042 33.0 11.5 71 1163-1251 119-189 (201)
471 PRK00230 orotidine 5'-phosphat 45.3 1.4E+02 0.003 35.0 10.4 44 1142-1186 44-89 (230)
472 cd02067 B12-binding B12 bindin 45.2 2.4E+02 0.0052 29.1 11.2 74 1162-1252 35-108 (119)
473 cd04740 DHOD_1B_like Dihydroor 45.1 1.1E+02 0.0023 36.8 9.8 65 782-871 231-295 (296)
474 PRK09517 multifunctional thiam 44.7 37 0.00081 46.2 6.5 46 1207-1257 153-198 (755)
475 COG1830 FbaB DhnA-type fructos 44.4 88 0.0019 37.6 8.6 95 1135-1255 127-239 (265)
476 cd00945 Aldolase_Class_I Class 44.1 1.5E+02 0.0033 32.4 10.2 62 1169-1256 18-88 (201)
477 PRK03170 dihydrodipicolinate s 44.1 76 0.0016 38.1 8.4 74 1171-1256 29-106 (292)
478 PRK08185 hypothetical protein; 44.0 3E+02 0.0066 33.5 13.2 99 1139-1254 55-172 (283)
479 PF02662 FlpD: Methyl-viologen 43.9 46 0.001 35.5 5.8 61 1225-1316 32-92 (124)
480 KOG3111 D-ribulose-5-phosphate 43.9 34 0.00073 39.2 4.9 43 1137-1183 153-196 (224)
481 PRK07807 inosine 5-monophospha 43.6 62 0.0013 41.9 7.9 68 1168-1254 230-299 (479)
482 PRK07455 keto-hydroxyglutarate 43.4 1.5E+02 0.0032 33.8 10.0 80 1142-1252 52-131 (187)
483 cd04727 pdxS PdxS is a subunit 43.0 1.2E+02 0.0027 36.8 9.6 81 1144-1251 57-137 (283)
484 COG0034 PurF Glutamine phospho 42.9 20 0.00044 45.5 3.4 40 112-162 2-41 (470)
485 PRK07107 inosine 5-monophospha 42.8 76 0.0017 41.4 8.6 74 734-810 296-379 (502)
486 PRK12858 tagatose 1,6-diphosph 42.8 2.3E+02 0.0049 35.4 12.2 33 1225-1258 243-281 (340)
487 TIGR00874 talAB transaldolase. 42.4 2.4E+02 0.0052 34.9 12.2 78 1172-1260 164-250 (317)
488 PTZ00411 transaldolase-like pr 42.2 1.7E+02 0.0037 36.4 11.0 104 1144-1260 153-262 (333)
489 cd00957 Transaldolase_TalAB Tr 41.2 2.6E+02 0.0056 34.6 12.2 52 1204-1260 199-250 (313)
490 PTZ00077 asparagine synthetase 40.9 26 0.00056 46.4 4.1 40 114-162 1-40 (586)
491 PRK09206 pyruvate kinase; Prov 40.8 2E+02 0.0043 37.5 11.6 105 1135-1254 195-313 (470)
492 cd04739 DHOD_like Dihydroorota 40.6 1.2E+02 0.0026 37.3 9.4 112 732-871 177-302 (325)
493 PRK09136 5'-methylthioadenosin 40.2 4.2E+02 0.0091 31.6 13.4 51 1210-1260 137-191 (245)
494 PRK14041 oxaloacetate decarbox 39.8 1E+02 0.0022 40.0 8.9 56 1135-1191 179-237 (467)
495 cd00712 AsnB Glutamine amidotr 39.6 30 0.00064 39.7 3.9 38 115-162 1-38 (220)
496 TIGR02320 PEP_mutase phosphoen 39.6 3.2E+02 0.007 33.3 12.6 109 1134-1252 60-188 (285)
497 PF09370 TIM-br_sig_trns: TIM- 39.4 68 0.0015 38.6 6.7 77 1168-1251 161-242 (268)
498 PF09147 DUF1933: Domain of un 39.4 93 0.002 35.4 7.3 35 451-487 99-135 (201)
499 PRK12376 putative translaldola 39.2 2.3E+02 0.005 33.7 11.0 59 1198-1260 148-206 (236)
500 PRK07998 gatY putative fructos 38.9 2E+02 0.0042 35.1 10.6 116 1171-1316 160-278 (283)
No 1
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=4212.32 Aligned_cols=1653 Identities=64% Similarity=1.036 Sum_probs=1557.2
Q ss_pred ccccccCCCccccccccCCCCCCCchhhhhhhhccCCCCCCCCCCCCCCCCCCceEEEEEEeCCCCchHhHHHHHHHHhc
Q 000265 62 GNQLRLAGSERVHLWRSDGPGKSPKLRVVVRSALSGVPEKPLGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVR 141 (1760)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gly~p~~E~DaCGVGfia~~~g~~sh~iv~~al~~L~~ 141 (1760)
++.+|-.+....+.+..+..+++ ||.+..|+ ++|||||.+|||||||||||+++|+.||+||.||+.||+|
T Consensus 35 ~t~~~~~~s~~~~~~~~~~~g~~--------S~~~~~p~-~~~L~dp~~ErdaCGVGFvanl~g~~shkivtDA~~~L~~ 105 (2142)
T KOG0399|consen 35 GTSLRRSHSLTAQIYTDEQHGRK--------SWASAAPQ-KAGLYDPQYERDACGVGFVANLKGETSHKIVTDARIMLGR 105 (2142)
T ss_pred ccccccCCceeeeeccccccCCc--------ChhhhCch-hccccCccccccCccceeEEecCCccccchHHHHHHHHHh
Confidence 66666666666666655444443 59999998 8999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCcceeecccChHHHHHHHH-hcCCCCCCCCcceEEeEecCCCHHHHHHHHHHHHHHHHHcCCEEEE
Q 000265 142 MAHRGACGCETNTGDGAGILVALPHDFFKEAAK-NVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLG 220 (1760)
Q Consensus 142 M~HRGa~~~d~~tGDGAGil~~iP~~ff~~~~~-~~g~~lp~~g~YavG~~Flp~d~~~~~~~~~~ie~~~~~~gl~vlg 220 (1760)
|+||||||||+++|||||||+.|||+||++.++ +.|++||+.|+|||||||+|.++..+++++++|+++++++|+.||+
T Consensus 106 MtHRGacg~Dn~sGDGaGilt~iP~df~~~~~k~q~g~~lp~~g~yavGm~Flp~~d~~rkeak~vf~~~ae~~gl~VLg 185 (2142)
T KOG0399|consen 106 MTHRGACGCDNDSGDGAGILTGIPHDFYNKEAKEQLGLDLPDLGHYAVGMFFLPAEDNKRKEAKKVFTDLAEKLGLSVLG 185 (2142)
T ss_pred hhccCccCCCCCCCCccceeecCCHHHHHHHHhhccCCCCcccCcceEEEEEcchhHhHHHHHHHHHHHHHHHcCceEEE
Confidence 999999999999999999999999999998655 5699999999999999999999888999999999999999999999
Q ss_pred EEecCCCCCCCCCccccCCCeEEEEEEcC------CCCChhhHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCC
Q 000265 221 WRAVPTDNSGLGNSALQTEPVVEQVFLTP------SLRSKVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLSSR 294 (1760)
Q Consensus 221 wR~VPvd~~~lG~~a~~~~P~I~Q~fv~~------~~~~~~~fer~Ly~lRk~~e~~i~~~~~~~~~~~~~~yI~SlS~~ 294 (1760)
||+||||+++||+.|+++||.|.|+|+.| .+++.+.|||+||++||++ ++.+.. ..+|||||||+.
T Consensus 186 WR~Vp~d~silG~~A~~teP~i~Qv~l~p~~~~~~ae~~~~~fer~ly~lRk~~----~~~i~~----~~e~YvcSLsn~ 257 (2142)
T KOG0399|consen 186 WRKVPVDNSILGENALSTEPTILQVFLFPTYDAIYAEFDTDKFERSLYLLRKQA----SLQIGK----EKEFYVCSLSNQ 257 (2142)
T ss_pred eeccCCcccccChhhhhcCCchhhhccccchhcccccccHHHHHHHHHHHHHHH----HHhhhh----cceEEEEeccCc
Confidence 99999999999999999999999997754 2356789999999999999 554433 368999999999
Q ss_pred eEEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCceeeeccccccChhhHHHHHHHhhcccccc
Q 000265 295 TVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGEINTLRGNVNWMKAREGLLKCK 374 (1760)
Q Consensus 295 tivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~laHNGEInt~~gN~n~m~aRe~~~~s~ 374 (1760)
|||||||+.|.||++||+ ||++++|+|++||+|+||||||||+|++|||+|+++|||||||++||+|||++||++|+|.
T Consensus 258 TIVYKGql~~~ql~~yY~-DL~N~~y~S~~AlvHsRFSTNTfPsWdrAQPmR~l~HNGEINTlrGN~NwMraREg~mks~ 336 (2142)
T KOG0399|consen 258 TIVYKGQLRPEQLYNYYP-DLTNAEYKSHFALVHSRFSTNTFPSWDRAQPMRFLAHNGEINTLRGNKNWMRAREGVMKSA 336 (2142)
T ss_pred eEEEecccCHHHHhhhcc-cccchhhcccceeeeeccccCCCCCccccccchhhhccCceeeeccchhHHHHHHHhhhcc
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcC-CCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCC
Q 000265 375 ELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAG-RSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGP 453 (1760)
Q Consensus 375 ~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g-~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGP 453 (1760)
.|+ +++.++.||+++++|||++||+++|+|+++| +||+||+|||+||||+|+++|+||+++||+|++|.|||||||
T Consensus 337 ~~~---~e~~kl~Pive~~~SDSa~lDnv~ElLvrsG~rslpEAvM~mVPEA~~nd~~~~~e~k~fYd~~a~~MEpWDGP 413 (2142)
T KOG0399|consen 337 VFK---DELNKLLPIVEEGGSDSAALDNVLELLVRSGGRSLPEAVMMMVPEAWQNDKNMDPEKKAFYDWAACQMEPWDGP 413 (2142)
T ss_pred hhh---hhhhhhcccccCCCCchhhhhHHHHHHHHhCCCCcHHHHHHhChHHHhcCCCCCHHHHHHHHHHhhcCCCCCCc
Confidence 998 7999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred cEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEEEEEcCCCEEechHHHHHHH
Q 000265 454 ALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQY 533 (1760)
Q Consensus 454 a~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml~vd~~~g~i~~~~eik~~~ 533 (1760)
|++.|+||+++||++|||||||+|||.|.|+++|+|||+|++++++++|++||||.||.|++||++.|+|++|+|+|.+|
T Consensus 414 ALl~FsDGry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD~~~g~v~dd~elK~ri 493 (2142)
T KOG0399|consen 414 ALLTFSDGRYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVDTELGQVVDDKELKKRI 493 (2142)
T ss_pred eEEEecCCceeeeeeccCCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEEEEccCCeEEecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcHHHHhhcccccccchhccccccCCCCCccCcCCCCCCCCcccccccccchHHHHHcCCCHHHHHHhHHHHHhcc
Q 000265 534 SLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNMENMGIHGLLAPLKAFGYTVEALEMLMLPMAKDG 613 (1760)
Q Consensus 534 a~~~py~~wl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~fgyt~E~~~~~l~pma~~g 613 (1760)
++++||++||+++.+.+..+.+...+...+...+. ..+.....+ ..+.|||||.|+++|+|.|||.+|
T Consensus 494 s~~~py~~wl~~~~~~l~~~~~~~~~s~~~~~s~~--~~e~~~~~d----------~~l~afgYt~E~v~mll~pMa~~g 561 (2142)
T KOG0399|consen 494 SSRRPYGSWLSENIILLKPIKDSVLSSTAVENSYL--VLETLRSQD----------DVLLAFGYTSEQVQMLLEPMAKQG 561 (2142)
T ss_pred hhcCcHHHHHHHhhhhhhhhhhhhhcccccccccc--cchhhhccc----------hhHHhccCcHHHHHHHHHHHHhcC
Confidence 99999999999988777655433221100000000 000000011 336799999999999999999999
Q ss_pred cccccccCCCCCccccccCccchhHHHhhhcccccCCCCCcccccceeeeeeeecCCCCCCCCCcCccceEEecCCccCH
Q 000265 614 TEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSI 693 (1760)
Q Consensus 614 ~E~igSMG~D~plA~ls~~~~~l~~yFkQ~FAQVTNPPID~iRE~~vmSl~~~~G~~~n~l~~~~~~~~~l~l~sPiL~~ 693 (1760)
|||+||||||+||||||++|++|||||||+||||||||||||||.+||||+|+|||++||||++++||+||.|++|||+.
T Consensus 562 kEalgsMGnDaplA~LS~~p~llydYFkQlFAQVTNPpIDPiRE~iVmSLec~IGp~gNllE~~~eq~~rl~L~~PvL~~ 641 (2142)
T KOG0399|consen 562 KEALGSMGNDAPLACLSDRPHLLYDYFKQLFAQVTNPPIDPIREAIVMSLECYIGPEGNLLEPGPEQCSRLILKGPVLNE 641 (2142)
T ss_pred CccccccCCCcceehhcCCccHHHHHHHHHHHhccCCCCChhhhhheEEEEeeecCCcCcccCChhHhceeeccCCcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHHHHHHHH
Q 000265 694 EEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAVGAVHHH 773 (1760)
Q Consensus 694 ~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav~avh~~ 773 (1760)
+||++|++..+++|+++.|||||++++|.+||.++|++||++|.+||++|++|||||||+.+++|+||||||||||||||
T Consensus 642 ~e~ealk~~~y~~wk~k~iditf~~~~Gv~Gl~~~ld~ic~~A~eAv~~G~qiLVLSDR~~~~eRv~i~sllAvgaVHhh 721 (2142)
T KOG0399|consen 642 EEMEALKNDMYPGWKVKEIDITFDKSEGVKGLVKTLDRICEEADEAVRDGYQILVLSDRNDSAERVPIPSLLAVGAVHHH 721 (2142)
T ss_pred HHHHHHhcCCCccceeeeeeeeeehhhhhhhHHHHHHHHHHHHHHHHhccceEEEEecccCCcccCChHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccccHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 000265 774 LVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGM 853 (1760)
Q Consensus 774 Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~Gl 853 (1760)
||+++||++|+|||||||+|+||||||||||||||||||||+||+.+|.++|++++.++.+.++.+|+++||+||++.||
T Consensus 722 LIqn~lR~~valV~et~e~revHhfc~LlGyGadaicPyLa~Et~~RL~~~~~~~~~nn~~t~t~eq~~knY~kavn~Gi 801 (2142)
T KOG0399|consen 722 LIQNKLRMQVALVVETGEAREVHHFCVLLGYGADAICPYLAMETLWRLSNKGLLDPRNNGPTVTEEQAQKNYRKAVNAGI 801 (2142)
T ss_pred HHHhhhhceEEEEEecCcceeeeeeeeeeccCccccchHHHHHHHHHHHhccccccccCCCcccHHHHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999976655556889999999999999999
Q ss_pred HHHHHhhchhhhhcccccchhhhcCCCHHHHhhhcCCCCCCcCCCChHHHHHHHHHHHHHhCCCCCCCCCCccCcCCCCC
Q 000265 854 MKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNP 933 (1760)
Q Consensus 854 lKvmsKMGIstl~SY~gaqiFeavGl~~~vv~~~F~gt~sri~G~~~~~i~~e~~~~h~~a~~~~~~~~~~~~~~~l~~~ 933 (1760)
||||||||||||+|||||||||++||++||||+||+||+|||+|+|||+||+|++.+|++|||++...+ ....|++.
T Consensus 802 lKVmsKMGIStl~SYkgAQIFE~lGL~neVVd~cF~gt~Sri~G~Tfe~LA~dal~~h~rafpt~~~~~---~s~~L~n~ 878 (2142)
T KOG0399|consen 802 LKVMSKMGISTLASYKGAQIFEALGLDNEVVDKCFTGTVSRIGGATFEELARDALSLHERAFPTDQTAR---FSKTLPNS 878 (2142)
T ss_pred HHHHHHhChHHHhhccchhhhhhhccchHHHHHHhcCChhhhccccHHHHHHHHHHHHHhcCCCccccc---ccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999875421 14569999
Q ss_pred CceeeccCCCccccCHHHHHHHHHHHhcCCHHHHHHHHHHHhhcccCcccccccccc-cCCCCCCCCCCCCccccccceE
Q 000265 934 GDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFK-EADVKIPLEEVEPASEIVKRFC 1012 (1760)
Q Consensus 934 G~y~~r~~ge~H~~~P~~i~~lq~a~r~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~-~~~~~i~~~eVe~~t~i~~Pf~ 1012 (1760)
|+||||++||+|.|+|.+|++||+|||+++..+|+.|++..++..+.|+||+||+|+ +.+.+||+++|||+++|+++|+
T Consensus 879 G~~h~R~gGe~H~N~P~aia~Lq~AvR~kne~ay~~Ys~~~~~~~r~~tlRglLefk~s~~~~IPl~~VEPaseIv~RFc 958 (2142)
T KOG0399|consen 879 GFYHFRDGGEKHVNEPLAIAKLQDAVRNKNEAAYAEYSKQHNEARRWCTLRGLLEFKFSDSVPIPLEEVEPASEIVKRFC 958 (2142)
T ss_pred cceEecCCccccCCCHHHHHHHHHHHHhcchhHHHHHHHHHHhhCccchhhhhheeccccCCcCchhhcCcHHHHHHHHh
Confidence 999999999999999999999999999999999999999999888999999999998 6789999999999999999999
Q ss_pred ecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeecccCCcCCChhhhcCchhHHHhh
Q 000265 1013 TGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKM 1092 (1760)
Q Consensus 1013 i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgrFGVt~~~L~~a~~iqIKi 1092 (1760)
++|||||++|.|+|.+||+|||++|++||||||||+|+|..+..++. ++++|+|||+||+|||||+.||.|||+|||||
T Consensus 959 TGaMS~GsIS~EtH~tlAIAMNRlGgKSNtGEGGEdp~R~~~l~d~~-d~~rSAIKQVASgRFGVTs~yL~nADeLqIKm 1037 (2142)
T KOG0399|consen 959 TGAMSYGSISMETHTTLAIAMNRLGGKSNTGEGGEDPERSKPLADGV-DTMRSAIKQVASGRFGVTSYYLSNADELQIKM 1037 (2142)
T ss_pred cccccccccchhhHHHHHHHHHhhcCcCCCCCCCCChhhcccccccc-hHHHHHHHHHhccccccchhhccCchhhhhHH
Confidence 99999999999999999999999999999999999999999887763 67899999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHH
Q 000265 1093 AQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASG 1172 (1760)
Q Consensus 1093 aQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~ 1172 (1760)
+|||||||||+|||+||+..||++||++||+.||||||||||||||||+|+|++||++||+++|+||||+++|||++|.+
T Consensus 1038 AQGAKPGEGGeLPghKVs~dIA~tR~St~gVgLISPPPHHDIYSIEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASG 1117 (2142)
T KOG0399|consen 1038 AQGAKPGEGGELPGHKVSADIAKTRHSTAGVGLISPPPHHDIYSIEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASG 1117 (2142)
T ss_pred hcCCCCCCCCCCCcchhhHHHHHhccCCCCCCcCCCCCccccccHHHHHHHHHHhhccCCCceeEEEEEecccceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCcccc
Q 000265 1173 VVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGF 1252 (1760)
Q Consensus 1173 aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~ 1252 (1760)
++|+.||+|.||||+||||+|+|++|||+|+||+++|+|+||+|..|+||.||.|++|||||||+||+.|.+||||++||
T Consensus 1118 VaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQtLv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf 1197 (2142)
T KOG0399|consen 1118 VAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQTLVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGF 1197 (2142)
T ss_pred cccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhhHHhhccccccEEEEecCccccchHHHHHHHhCchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000265 1253 STAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1253 GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
+|++|+++||+|||+||+|+||||||||||+||+||+|.||+|+|||..+++|+|.+|++||+++++|+|||+|+|..++
T Consensus 1198 ~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~PehvVNff~yvaEEvR~imakLGfrtldemvGrtdlLk~~~ 1277 (2142)
T KOG0399|consen 1198 STAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHVVNFFFYVAEEVRGIMAKLGFRTLDEMVGRTDLLKARS 1277 (2142)
T ss_pred cccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHhCcchHHHHhcchhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccchhhhcCCCCccccCcccCCCCCcccccccccCCCCchhHHHHHHHHHHHHHHcCCcEEEEecccccCcchhhhhh
Q 000265 1333 EVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLS 1412 (1760)
Q Consensus 1333 ~~~~~~~~~~~ldls~~l~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~l~~~~~~~~~~~i~n~dR~vG~~Ls 1412 (1760)
++ +.|+.+||||+||+|+..++|+.+++++++|+|.++.+||++||++++.+++.+.++.++..|.|+||++|++||
T Consensus 1278 di---~~K~~~lDls~lL~~a~~i~P~~s~~~~kkq~h~l~~~LD~~li~e~ev~~~~~~~~~~~~~I~NvDRa~g~~ls 1354 (2142)
T KOG0399|consen 1278 DI---VVKATNLDLSPLLTPAGQIRPGASTKGVKKQDHELGTALDNKLIDEAEVTLEIGLPVFIEESIINVDRALGTRLS 1354 (2142)
T ss_pred cc---hhhheeechhhhcchhhhcCCCccccchhhhhhcccchhhhhhhhhhhhhhhccCceeeeeeEEecchhhhhhhh
Confidence 76 369999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhh
Q 000265 1413 HEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVA 1492 (1760)
Q Consensus 1413 ~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~ 1492 (1760)
|+|+||||+.|||.++|+|+|.||||||||||+++|++|+++||||||||||||||+|+|+|++.+.|++++|+|+||+|
T Consensus 1355 ~~IsKryge~Gl~~~~i~i~~~GsAGQSfgaFLapGi~~~L~GdaNDYVGKglsGG~iVI~Ppk~s~fkpeEn~IiGNvc 1434 (2142)
T KOG0399|consen 1355 YEISKRYGETGLPKDTININFTGSAGQSFGAFLAPGITLRLEGDANDYVGKGLSGGKIVIYPPKASSFKPEENTIIGNVC 1434 (2142)
T ss_pred HHHHHHhcccCCCCceEEEEEEeccccccceeecCCcEEEEeccccchhcccccCCeEEEeCCccCCCCcccceEEccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcccEEEEecccccccccccCCcEEEEcCCCccccccccCcEEEEeCCCCCcccCCCcceEEEEEcCCchhhcccCc
Q 000265 1493 LYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNP 1572 (1760)
Q Consensus 1493 ~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G~Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~~~~~~~~~~n~ 1572 (1760)
+||||||.+|++|.|||||+|||||+.+||||+|||+|||||||+|||||.+|+||++||+||++|++|.+++|..++|.
T Consensus 1435 lYGATsG~~f~~G~AgERFaVRNSgA~aVVEg~GDh~cEYMTGG~vVVLgk~grN~aAgmsGGiAY~ld~d~~f~~kiN~ 1514 (2142)
T KOG0399|consen 1435 LYGATSGDAFFRGVAGERFAVRNSGANAVVEGVGDHGCEYMTGGRVVVLGKTGRNFAAGMSGGIAYLLDEDDDFLGKINK 1514 (2142)
T ss_pred eecccccceEEeccccceeeeeccCceeeeeeccCccceeecCCEEEEEcccchhhhhcccCceEEEEccccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhhhhhcCCCeEEEcccchHHHHHHHHHHHHHHHHHhhc---cc
Q 000265 1573 ELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKVAAAQEAAEDAV---KD 1649 (1760)
Q Consensus 1573 ~~V~l~~~~~~~d~~~L~~ll~~h~~~t~s~~a~~iL~~w~~~~~~F~kv~P~~y~~~l~~~~~~~~~~~~~~~~---~~ 1649 (1760)
++|++++++++.|+.+||.||++|++||||.+|++||.||++++++||||+|++||++|+++++++.+++..+.. +.
T Consensus 1515 e~Vdl~~vt~~~~~~~lK~lIq~h~~~TgS~l~~~IL~~~~k~l~~fikv~P~dyk~vl~~~~~~~~k~~~~~~~~~~~~ 1594 (2142)
T KOG0399|consen 1515 ETVDLDSVTDPVDIAFLKSLIQEHVEYTGSQLAARILTNFEKYLPKFIKVFPRDYKRVLEAEKAERKKAKTGDKAQQSKA 1594 (2142)
T ss_pred hhcchhhccCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhCCchHhHHHHHhHHHHHhhccchhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999887776655532221 11
Q ss_pred CCCCC---chhhhhhhHHHHHHHhhhhccCcccccccccCCCCCCCcccccccCcccCccccccCCCCCCHHHHhcCchh
Q 000265 1650 AEEPD---EADFKEKDAFEELKKMAIASLNEKSNQEAEQVEPTKRPSRVADAVKHRGFIAYEREGVQYRDPNIRMNDWKE 1726 (1760)
Q Consensus 1650 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~gF~~~~R~~~~~r~~~~R~~Df~E 1726 (1760)
+...+ +..+.+++ ++.....+++..|.||.+.|+....|+.++++|.||||+|+|+...||+|.+|++||+|
T Consensus 1595 ~~~~~~~~~~~~~e~~-----kk~~~~~~~~~~~~ee~~~d~~~~~k~~~~ldk~rgf~~y~r~~~~yrdp~~r~ndw~e 1669 (2142)
T KOG0399|consen 1595 LLSVDETKPQTIEEHN-----KKQKTALDAAGFDNEEDLGDAAALEKKSEPLDKLRGFMKYNRRKEMYRDPKERLNDWKE 1669 (2142)
T ss_pred hcccCCCCcccccchh-----hhhhhhhhhhhcchhhhccchhhhhcCCcchhhhcchhhhhhccccccChhhhcccHHH
Confidence 11111 11111121 11222346788999999999999999999999999999999999999999999999999
Q ss_pred hccCCCChhHHHHHHhhhcCCCCCcccCCCCCCC
Q 000265 1727 VMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF 1760 (1760)
Q Consensus 1727 v~~~l~~~~~a~~QAaRCMdCG~PfC~~~~gCPl 1760 (1760)
++... ...++++|++||||||+||||+++||||
T Consensus 1670 ~~~~~-~~~~~~~qtarcmdcgtpfc~~~~gcpl 1702 (2142)
T KOG0399|consen 1670 VYDFE-AVSNLREQTARCMDCGTPFCQSDSGCPL 1702 (2142)
T ss_pred hhhhc-cchhhHHHhhHHhcCCCccccCCCCCcc
Confidence 99999 8899999999999999999999999997
No 2
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=100.00 E-value=0 Score=3823.25 Aligned_cols=1473 Identities=46% Similarity=0.780 Sum_probs=1399.4
Q ss_pred CCCCCCCCCCCCCceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeecccChHHHHHHHHhcCCCCC
Q 000265 102 PLGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAKNVGFQLP 181 (1760)
Q Consensus 102 ~~gly~p~~E~DaCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~~iP~~ff~~~~~~~g~~lp 181 (1760)
++|||||++|||||||||||+++|++||+||++||++|+||+||||||||++||||||||+||||+||++.+++.|++||
T Consensus 2 ~~glydp~~E~DaCGvGfiA~i~G~~Sh~iV~~al~aL~~m~HRGa~gaD~~tGDGAGIl~qIP~~ff~~~~~~~g~~lp 81 (1485)
T PRK11750 2 HMGLYDPSLERDNCGFGLIAHMEGEPSHKLVRTAIHALARMTHRGGIAADGKTGDGCGLLLQKPDRFFRAVAEEAGWRLA 81 (1485)
T ss_pred CCCCCCccccccCCcceEEEEcCCCccHHHHHHHHHHHHhccCcCcccCCCCCCCcceeeccCCHHHHHHHHHHcCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999998888999998
Q ss_pred CCCcceEEeEecCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCCCCCCccccCCCeEEEEEEcCC-CCChhhHHHH
Q 000265 182 PPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPS-LRSKVDFENQ 260 (1760)
Q Consensus 182 ~~g~YavG~~Flp~d~~~~~~~~~~ie~~~~~~gl~vlgwR~VPvd~~~lG~~a~~~~P~I~Q~fv~~~-~~~~~~fer~ 260 (1760)
+ +|||||||+|+|+..+++++++||++++++|++|++||+||||+++||+.|++++|.|||+||.++ ..+..+|||+
T Consensus 82 ~--~yaVgm~Flp~d~~~~~~~~~~~e~~~~~~gl~vlgwR~VPv~~~~LG~~A~~~~P~i~Q~fv~~~~~~~~~~fer~ 159 (1485)
T PRK11750 82 K--NYAVGMVFLNQDPELAAAARRILEEELQRETLSVVGWREVPTNPSVLGEIALSSLPRIEQVFVNAPAGWRERDFERR 159 (1485)
T ss_pred c--cceEEEEEcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEcCCCCccccchhHhhCCCeEEEEEEccCCCCChhhHHHH
Confidence 6 899999999999999999999999999999999999999999999999999999999999999863 2344679999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCCeEEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCC
Q 000265 261 MYILRRVSMAAIRESLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWD 340 (1760)
Q Consensus 261 Ly~lRk~~e~~i~~~~~~~~~~~~~~yI~SlS~~tivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~ 340 (1760)
||++||++|+++ .. .++|||||||++|||||||++|+||.+||+ ||+|++|+|++||+|+||||||||||.
T Consensus 160 Ly~~R~~~e~~~----~~----~~~~Yi~SlS~rtiVYKGml~~~ql~~fY~-DL~d~~~~s~~al~HsRFSTNT~PsW~ 230 (1485)
T PRK11750 160 LFIARRRIEKRL----AD----DKDFYVCSLSNLVIIYKGLMMPADLPRFYL-DLADLRLESAICVFHQRFSTNTLPRWP 230 (1485)
T ss_pred HHHHHHHHHHhh----cc----CCCEEEEecCCCcceeEecccHHHHHHhhh-hhCCcceeEEEEEEECcCCCCCCCCCC
Confidence 999999995432 11 246999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCCceeeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHH
Q 000265 341 RAQPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMM 420 (1760)
Q Consensus 341 ~AQPfr~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~ 420 (1760)
+|||||+++|||||||+++|+|||++||..|+|+.|. +++++.||+.+++|||++|||+||+|+++|+||++|+||
T Consensus 231 ~AqPFR~laHNGEINTi~gN~nwm~are~~l~s~~~~----~~~~~~Pii~~~~SDSa~lDn~lElL~~~G~sl~~A~~m 306 (1485)
T PRK11750 231 LAQPFRYLAHNGEINTITGNRQWARARAYKFQTPLIP----DLQEAAPFVNETGSDSSSLDNMLELLLAGGMDLFRAMRL 306 (1485)
T ss_pred cCCCceeeeeccccccHHHHHHHHHHHHHhccCCCcc----hHHhhCCcCCCCCChHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999999999999999999999999995 799999999999999999999999999999999999999
Q ss_pred cCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCC
Q 000265 421 MIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPE 500 (1760)
Q Consensus 421 ~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~ 500 (1760)
|+||+|++++.|+|++|+||+||+++||||||||+|+|+||+.++|+||||||||+||+.++|+.||+|||+|++|++++
T Consensus 307 liPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~g~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ldi~~~ 386 (1485)
T PRK11750 307 LVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTDGRYAACNLDRNGLRPARYVITKDKLITLASEVGIWDYQPD 386 (1485)
T ss_pred hCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEeCCEEEEecCCCCCccceEEEEcCCEEEEEecceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEccccCCCcEEEEEcCCCEEechHHHHHHHHhcCCcHHHHhhcccccccchhccccccCCCCCccCcCCCCCCCCcc
Q 000265 501 DVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNM 580 (1760)
Q Consensus 501 ~vv~kgrl~PGeml~vd~~~g~i~~~~eik~~~a~~~py~~wl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (1760)
++++||+|+|||||+||+++|+|++|+|||+++++++||++||++++++|++++..... ... . .. .+
T Consensus 387 ~vvrkg~l~PGemi~id~~~g~i~~~~eik~~~a~~~py~~wl~~~~~~L~~~~~~~~~------~~~---~--~~-~~- 453 (1485)
T PRK11750 387 EVVEKGRVGPGELLVIDTRTGRILHSAEIDNDLKSRHPYKEWLEKNVRRLVPFEELPDE------QVG---S--RE-LD- 453 (1485)
T ss_pred eeEEecccCCCeEEEEeCCCCeEeccHHHHHHHHhcCCHHHHHHhhccccccccccccc------ccc---c--cC-CC-
Confidence 99999999999999999999999999999999999999999999999999975431100 000 0 00 01
Q ss_pred cccccccchHHHHHcCCCHHHHHHhHHHHHhcccccccccCCCCCccccccCccchhHHHhhhcccccCCCCCcccccce
Q 000265 581 ENMGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIV 660 (1760)
Q Consensus 581 ~~~~~~~l~~~~~~fgyt~E~~~~~l~pma~~g~E~igSMG~D~plA~ls~~~~~l~~yFkQ~FAQVTNPPID~iRE~~v 660 (1760)
.++|.++|++||||.||++++|.|||++||||||||||||||||||++||+|||||||+||||||||||||||++|
T Consensus 454 ----~~~l~~~q~afGyt~E~~~~~l~pMa~~g~EpigSMG~D~plAvLS~~~~~l~~yFkQ~FAQVTNPPID~iRE~~v 529 (1485)
T PRK11750 454 ----DDTLKSYQKQFQYSFEELDQVIRVLAENGQEAVGSMGDDTPMAVLSSQPRSIYDYFRQQFAQVTNPPIDPLREAHV 529 (1485)
T ss_pred ----hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCcCcccCCCCcchhhhcCCCccHHHHhhhcceeccCCCCchhhhhce
Confidence 1568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCCCCCCcCccceEEecCCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHH
Q 000265 661 TSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAI 740 (1760)
Q Consensus 661 mSl~~~~G~~~n~l~~~~~~~~~l~l~sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av 740 (1760)
|||+|+||+++|||++++++|++|+|+||||++.||++|+++....|++++||++|+. +.++|++||++||++|++||
T Consensus 530 mSl~~~lG~~~n~l~~~~~~~~~l~l~~PiL~~~~~~~l~~~~~~~~~~~~l~~~f~~--~~~~L~~aL~~L~~~A~~Av 607 (1485)
T PRK11750 530 MSLATCIGREMNVFCETEGHAHRVIFKSPVLSYSDFKQLTTLDEEHYRADTLDLNYDP--EETGLEAAIKRLCDEAEQAV 607 (1485)
T ss_pred eeeeeeeCCCcCcCCCCcccCCeEEeCCceeCHHHHHHHHhccccCCceEEEEEEEeC--ChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987678999999999986 44689999999999999999
Q ss_pred HcCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccccHHHHHHHHHH
Q 000265 741 KEGYTLLVLSDRAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWR 820 (1760)
Q Consensus 741 ~~G~~iliLsDr~~~~~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av~Pyla~e~~~~ 820 (1760)
++|++|||||||+++.+++|||+|||||||||||+++|+|++|||||||||+||+||||||||||||||||||||||+++
T Consensus 608 ~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYLA~eti~~ 687 (1485)
T PRK11750 608 RDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYLAYETLGD 687 (1485)
T ss_pred HCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccccchhhhcCCCHHHHhhhcCCCCCCcCCCCh
Q 000265 821 LQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVDGATF 900 (1760)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~gaqiFeavGl~~~vv~~~F~gt~sri~G~~~ 900 (1760)
|+++|++ . .+.+++++||++|++|||+|||||||||||+||+||||||||||+++|||+||+||+|||+|++|
T Consensus 688 l~~~g~l-----~--~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiFEaiGL~~~vv~~~F~gt~sri~Gi~~ 760 (1485)
T PRK11750 688 LVDTGEI-----L--KDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLFEAVGLHDDVVDLCFKGVVSRIGGASF 760 (1485)
T ss_pred HHhcCCC-----C--CCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCcccccccCCCHHHHHHhcCCCCccCCCccH
Confidence 9999987 2 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCccCcCCCCCCceeeccCCCccccCHHHHHHHHHHHhcCCHHHHHHHHHHHhhcccC
Q 000265 901 EVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKT 980 (1760)
Q Consensus 901 ~~i~~e~~~~h~~a~~~~~~~~~~~~~~~l~~~G~y~~r~~ge~H~~~P~~i~~lq~a~r~~~~~~~~~~~~~~~~~~~~ 980 (1760)
++|++|++.||+.||+.. ..||.+|+||||++||+|.|+|++|+.||+|+|+++|+.|++|+...+++ ++
T Consensus 761 ~~i~~e~~~rh~~a~~~~---------~~L~~~g~~~~r~~ge~H~~~p~~i~~lq~a~~~g~~~~y~~y~~~~~~~-~~ 830 (1485)
T PRK11750 761 EDFEQDQKNLSKRAWLAR---------KPIDQGGLLKYVHGGEYHAYNPDVVNTLQKAVQSGDYSDYQEYAKLVNER-PV 830 (1485)
T ss_pred HHHHHHHHHHHHHhcCCc---------cCCCCCCeeeeccCCcccccCHHHHHHHHHHHHcCCHHHHHHHHHHhccC-CC
Confidence 999999999999999522 23999999999999999999999999999999999999999999999877 56
Q ss_pred cccccccccccCCCCCCCCCCCCccccccceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCC
Q 000265 981 CNLRGLLKFKEADVKIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSM 1060 (1760)
Q Consensus 981 ~~~r~ll~~~~~~~~i~~~eVe~~t~i~~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~ 1060 (1760)
.+||+||.|+....++|+++|+|+++|.+||++++||||+||+|+|++||+||+++|+++||||||++|+++.
T Consensus 831 ~~lr~ll~~~~~~~~~p~~eve~v~~I~~rf~~~aMSfGalS~eA~~aLA~a~~~~G~~sntGEGG~~p~~~~------- 903 (1485)
T PRK11750 831 ATLRDLLALKPADNPIPLDEVEPAEELFKRFDSAAMSIGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYG------- 903 (1485)
T ss_pred CCHHHHhcccCCCCCCCccccccHHHHhcccccccCCCCccCHHHHHHHHHHHHHhCCceecCCCCCCHHHHh-------
Confidence 7999999998656789999999999999999999999999999999999999999999999999999999874
Q ss_pred chhhhheeecccCCcCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHH
Q 000265 1061 NPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDL 1140 (1760)
Q Consensus 1061 ~~~~s~IkQvasgrFGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedL 1140 (1760)
+...+.|+|++|+|||||++||.++++||||++||||||+||+||++||+++||++|+++||+++|||||||||||||||
T Consensus 904 ~~~~~~i~QiaSGrFGv~~e~l~~a~~ieIKi~QGAKPG~GG~Lpg~KV~~~IA~~R~~~~G~~liSP~phhdiySieDL 983 (1485)
T PRK11750 904 TEKVSKIKQVASGRFGVTPAYLVNAEVLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHDIYSIEDL 983 (1485)
T ss_pred cccCCeEEEccCCcCCCCHHHhccCCEEEEEecCCCCCCCCCcCccccCCHHHHHHcCCCCCCCCCCCCCCccCCCHHHH
Confidence 12346899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000265 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
+|+|++||+.||++||+||++++.|++++|.+++|||||+|+|||++||||++|+++++|+|+||+.+|+++|++|+.+|
T Consensus 984 ~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~g 1063 (1485)
T PRK11750 984 AQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANG 1063 (1485)
T ss_pred HHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHh-hcCCCHHHHHHHH
Q 000265 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLRE-KFAGEPEHVINFF 1299 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~-~~~g~~e~V~n~~ 1299 (1760)
+|++|.|++||||+||.||+||++||||+|+|||++|+|+||+|||+||+|+||+|||||||.||+ +|.+.+++|+|||
T Consensus 1064 lR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~ 1143 (1485)
T PRK11750 1064 LRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYF 1143 (1485)
T ss_pred CCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 6788899999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhhcCCCceeecccccccchhhhcCCCCccccCcccCCCCCcccccccccCCCCchh-HHH
Q 000265 1300 FMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMA-LDQ 1378 (1760)
Q Consensus 1300 ~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~~~~~~~~~~~~ldls~~l~~~~~~~~~~~~~~~~~~~~~~~~~-ld~ 1378 (1760)
..+.+||+++|+.||+++++|||||+|||.+.+.. .+ |++.||||+||.+++. .+....++...|+|.+++. ||+
T Consensus 1144 ~~~~~el~~~la~lG~~s~~elvGr~dlL~~~~~~--~~-k~~~lDls~lL~~~~~-~~~~~~~~~~~~~~~~~~~~ld~ 1219 (1485)
T PRK11750 1144 EFIAEETREWMAQLGVRSLEDLIGRTDLLEELEGE--TA-KQQKLDLSPLLETAEP-PAGKALYCTEERNPPFDKGLLNE 1219 (1485)
T ss_pred HHHHHHHHHHHHHhCCCCHHHhcCchhccccccCc--hh-hhcCCChhHHhCCCCC-CCCcccccccccccccccchhHH
Confidence 99999999999999999999999999999987654 34 9999999999988752 2333455666678998877 999
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCC
Q 000265 1379 KLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSN 1458 (1760)
Q Consensus 1379 ~~~~~~~~~l~~~~~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~ 1458 (1760)
++|+.+.++|++++++.++++|.|+||++||+|||+|+|+||+.|||+++|+|+++|+|||||||||.+|++|+|+||||
T Consensus 1220 ~ll~~~~~ai~~~~~~~~~~~i~N~dR~vGt~ls~~i~~~yg~~gl~~~~i~i~~~G~aGqs~Gaf~~~G~~i~v~GdAn 1299 (1485)
T PRK11750 1220 QMLQQAKPAIEAKQGGEFWFDIRNTDRSVGARLSGEIARRHGNQGMADAPIKLRFTGTAGQSFGVWNAGGLELYLEGDAN 1299 (1485)
T ss_pred HHHHHHHHHHHcCCcEEEEEeEEeccccHHHHHHHHHHHHhCcCCCCCCeEEEEEEccCccccccccCCCCEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEecccccccccccCCcEEEEcCCCccccccccCcEE
Q 000265 1459 DYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTV 1538 (1760)
Q Consensus 1459 DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G~Gd~~~eyMtgG~i 1538 (1760)
|||||||+||+|+|+|++++.|++.+|+|+||+|+||||||++||+|+||+|||+|||||++||+|+|||+|||||||+|
T Consensus 1300 dyvGkgmsGG~I~V~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~i~G~AG~R~gvr~sG~~~VVeG~Gd~~~EyMtgG~v 1379 (1485)
T PRK11750 1300 DYVGKGMAGGKIVIRPPVGSAFRSHETAIIGNTCLYGATGGKLFAAGRAGERFAVRNSGAIAVVEGIGDHGCEYMTGGIV 1379 (1485)
T ss_pred ccccccccCCEEEEECCCccccccccccccccceeeccccCEEEEEcccccceeecCCCCeEEEeCCCcchhhhhcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcccCCCcceEEEEEcCCchhhcccCccceeeecCCCH-HHHHHHHHHHHHHHHHhCcHHHHHHHhhhhhcCC
Q 000265 1539 VVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEE-EDIITLRMMIQQHQRYTNSQLAKEVLADFENLLP 1617 (1760)
Q Consensus 1539 vVlG~~G~~~gagM~gG~iyv~~~~~~~~~~~n~~~V~l~~~~~~-~d~~~L~~ll~~h~~~t~s~~a~~iL~~w~~~~~ 1617 (1760)
||||++|+|+|+||+||+|||+|++++|..+||.+||++++++++ ++.+.|+.||++|+++|||++|++||+||++++.
T Consensus 1380 vVlG~~G~~~gagM~gG~~yv~~~~~~~~~~~n~~~V~~~~~~~~~~~~~~l~~li~~h~~~T~S~~a~~iL~~w~~~~~ 1459 (1485)
T PRK11750 1380 CVLGKTGVNFGAGMTGGFAYVLDEDGDFVDRVNHELVEILRVEDLEIHREHLRGLITEHVEETGSEWGEEILANFDDYLR 1459 (1485)
T ss_pred EEeCCCCcchhcCCCCCEEEEECCccchhhhcCHhHeeecccccChHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHhC
Confidence 999999999999999999999999999999999999999887432 2334499999999999999999999999999999
Q ss_pred CeEEEccc--chHHHHHHHHH
Q 000265 1618 KFIKVFPR--DYKRVLASMKV 1636 (1760)
Q Consensus 1618 ~F~kv~P~--~y~~~l~~~~~ 1636 (1760)
+||||+|+ +|+++|+...+
T Consensus 1460 ~F~kv~P~~~~~~~~~~~~~~ 1480 (1485)
T PRK11750 1460 KFWLVKPKAADVKALLGHRSR 1480 (1485)
T ss_pred cEEEEcCCHHHHHHHHHhhhh
Confidence 99999999 89999876543
No 3
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=100.00 E-value=9e-121 Score=1080.47 Aligned_cols=412 Identities=59% Similarity=1.018 Sum_probs=395.4
Q ss_pred ceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeecccChHHHHHHHHhcCCCCCCCCcceEEeEecC
Q 000265 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLP 194 (1760)
Q Consensus 115 CGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~~iP~~ff~~~~~~~g~~lp~~g~YavG~~Flp 194 (1760)
|||||||+++|++||+||++||++|+||+||||||||++||||||||+||||+||++.+++.|++||+.|+|||||+|||
T Consensus 1 CGvG~va~~~g~~sh~iv~~al~~L~~m~HRGa~~ad~~tGDGaGil~~iP~~f~~~~~~~~g~~lp~~g~yavg~~Flp 80 (413)
T cd00713 1 CGVGFVANIDGKPSHDIVQDALEALERMEHRGGVGADGKTGDGAGILIQIPHEFFREELAEAGIELPEAGEYAVGMLFLP 80 (413)
T ss_pred CeEEEEEECCCCchHHHHHHHHHHHhhCcCCCcccCCCCCCCcceEeccCCHHHHHHHHHHcCCCCCCCCCeeEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCCCCCCccccCCCeEEEEEEcCCC-CChhhHHHHHHHHHHHHHHHHH
Q 000265 195 QSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPSL-RSKVDFENQMYILRRVSMAAIR 273 (1760)
Q Consensus 195 ~d~~~~~~~~~~ie~~~~~~gl~vlgwR~VPvd~~~lG~~a~~~~P~I~Q~fv~~~~-~~~~~fer~Ly~lRk~~e~~i~ 273 (1760)
+|+..+++++++|+++++++|++||+||+||||+++||+.|++++|.|||+||.++. .+..+|||+||++||++|++++
T Consensus 81 ~~~~~~~~~~~~~e~~~~~~g~~vlgwR~VPv~~~~lG~~a~~~~P~i~Q~fv~~~~~~~~~~~er~l~~~r~~~e~~~~ 160 (413)
T cd00713 81 RDEEAREAAKAIIEEELEAEGLRVLGWRDVPVDNSVLGPTARATEPLIEQVFVGAPSGDDGEAFERKLYLLRKRIEKAIR 160 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEeCCCChhhcchhhhhcCCeEEEEEEecCCccCcchHHHHHHHHHHHHHHHHH
Confidence 999889999999999999999999999999999999999999999999999998643 3446799999999999966554
Q ss_pred HhhhhccCCCCcEEEEEecCCeEEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCceeeecccc
Q 000265 274 ESLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGE 353 (1760)
Q Consensus 274 ~~~~~~~~~~~~~yI~SlS~~tivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~laHNGE 353 (1760)
.. .++|||||||+++|||||||+|+||.+||+ ||++++|+|++||+|+||||||+|+|.+|||||+++||||
T Consensus 161 ~~-------~~~~yv~Sls~~~iVyKGm~~~~~v~~~Y~-DL~~~~~~s~~al~H~RfSTNT~p~W~~AqPfr~laHNGE 232 (413)
T cd00713 161 AA-------DEDFYVCSLSSRTIVYKGMLLPEQLGQFYP-DLQDPRFESAFALVHSRFSTNTFPSWPLAQPFRYLAHNGE 232 (413)
T ss_pred hc-------CCCEEEEecccceEEEeccccHHHHHHhcc-ccCcccceEEEEEEEEecCCCCCCCcccCCcceeEEEccc
Confidence 32 246999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCC
Q 000265 354 INTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMD 433 (1760)
Q Consensus 354 Int~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~ 433 (1760)
|||+++|+|||++||+.|+|+.|| +++++++||++.++||||+|||+||+|++.|+++++|+|||+||||++++.|+
T Consensus 233 InT~~gnr~~m~are~~~~s~~~g---~~~~~~~pi~~~~~SDS~~ld~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~ 309 (413)
T cd00713 233 INTIRGNRNWMRAREGLLKSPLFG---EDLKKLKPIINPGGSDSASLDNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMD 309 (413)
T ss_pred ccCHHHHHHHHHHhhhhhcCccch---hhHHhcCCcCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHhCChhhccCccCC
Confidence 999999999999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000265 434 PQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 434 ~e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
+++|+||+||+++||||||||+++|+||+.++|+||||||||+||..++|+.|++|||+|++++.++.|++||+|+||||
T Consensus 310 ~~~r~fYey~~~~me~~dGp~aiv~~dg~~i~a~rDrnGlRPl~~~~t~d~~~v~ASE~gal~~~~~~V~~kg~l~PGe~ 389 (413)
T cd00713 310 PELRAFYEYHSSLMEPWDGPAAIAFTDGRQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGEM 389 (413)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEEEeCCEEEEEeCCCCCcceEEEEECCCEEEEEeCCcccCCCcceeeecCCCCCCeE
Confidence 99999999999999999999999999999999999999999998887888899999999999998888999999999999
Q ss_pred EEEEcCCCEEechHHHHHHHHhcC
Q 000265 514 LLVDFEKRIVVDDEALKQQYSLAR 537 (1760)
Q Consensus 514 l~vd~~~g~i~~~~eik~~~a~~~ 537 (1760)
|+||+++|+|++|+|||+++++++
T Consensus 390 v~id~~~g~i~~~~eik~~~a~~~ 413 (413)
T cd00713 390 LLVDLEEGRILDDEEIKDQLAKRH 413 (413)
T ss_pred EEEECCCCEEEccHHHHHHHHhcC
Confidence 999999999999999999999864
No 4
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-120 Score=1079.30 Aligned_cols=478 Identities=59% Similarity=0.904 Sum_probs=462.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccccchhhhcCCCHHHHhhhcCCCCCCcCCCChHHHHHHHHHHHHHhCC
Q 000265 837 SKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFP 916 (1760)
Q Consensus 837 ~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~gaqiFeavGl~~~vv~~~F~gt~sri~G~~~~~i~~e~~~~h~~a~~ 916 (1760)
+.++++.||++++++|++||||||||||++||+|||+||++||+.++++.||+||++|++|++++++++|+..+|+.||.
T Consensus 2 ~~~~~~~~~~~~~~~~~~k~~skmgi~~~~sy~~a~~~~~~gl~~~~v~~~f~g~~~r~~~~~~~~~~~~~~~~~~~a~~ 81 (485)
T COG0069 2 SLEEALKNYIKAIEKGLLKIMSKMGISTLASYRGAQLFEAVGLSADVVDLYFPGTETRIGGISLDEIAQEISRRHRTAGA 81 (485)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHhhccchhhccCceeeccccCCcHHHheecCCCcccccccchHHHhHHHHHHHHhhcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCccCcCCCCCCceeeccCCCccccCHHHHHHHHHHHh-cCCHHHHHHHHHHHhhcccCcccccccccccCCC-
Q 000265 917 TRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAAR-GNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADV- 994 (1760)
Q Consensus 917 ~~~~~~~~~~~~~l~~~G~y~~r~~ge~H~~~P~~i~~lq~a~r-~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~- 994 (1760)
.+. +.++..|+|+||+.||+|.|||+++..||.+++ .++|+.|++|+..++++. ..++|++++|+....
T Consensus 82 ~~~--------~~~~~~G~~~~r~~ge~h~~~p~~~~~~q~a~~~~~~~~~~~~~~~~i~~~~-~~~~r~~~d~~~~~~~ 152 (485)
T COG0069 82 VKA--------KELDVGGFGTERDGGEPHFYDPDTLFALQVATRSEGGYREYKEYSVLIGTRA-STTLRDLLDFIADGSK 152 (485)
T ss_pred ccc--------ccccccCcceecccCCCccCCHHHHhHhhhcccccCchHHHHHHHHHhhccc-chhhhhhhhhcccccc
Confidence 542 368899999999999999999999999999999 889999999999999876 556999999986554
Q ss_pred CCCCCCCCCccccccceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeecccCC
Q 000265 995 KIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGR 1074 (1760)
Q Consensus 995 ~i~~~eVe~~t~i~~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgr 1074 (1760)
++++++|+|..+|.+||.+++||||+||+|+|++||+|||++|+.+||||||++|+++. ..++.|+|++|+|
T Consensus 153 ~i~~~~vep~~~i~~~~~~~aMS~GAlS~eA~~alA~a~~~~G~~sntGEGGe~~~~~~--------~~~s~I~QvaSGR 224 (485)
T COG0069 153 PIPIEEVEPVLELKKRFVTGAMSFGALSKEAHEALARAMNRIGTKSNTGEGGEDPERYE--------DGRSAIKQVASGR 224 (485)
T ss_pred ccccccccccceeeecccccccCCccccHHHHHHHHHHHHHhcCcccCCCCCCCHHHhc--------cccceEEEecccc
Confidence 89999999999999999999999999999999999999999999999999999999983 2458999999999
Q ss_pred cCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCC
Q 000265 1075 FGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGA 1154 (1760)
Q Consensus 1075 FGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~ 1154 (1760)
||||++||.++++|||||+||||||+|||||++||+++||++|+++||+++|||||||||||||||+|+|++||++||.+
T Consensus 225 FGV~~~yL~~a~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~ 304 (485)
T COG0069 225 FGVTPEYLANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWA 304 (485)
T ss_pred CccCHHHhCccceEEEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcC
Q 000265 1155 RISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLK 1234 (1760)
Q Consensus 1155 pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIr 1234 (1760)
+|+||+++..|++++|.+++|++||+|+|||++||||++|+++++|+|+||+.+|+++||+|+.+|+|++|.|++||||+
T Consensus 305 ~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~ 384 (485)
T COG0069 305 KISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLR 384 (485)
T ss_pred eEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhh--cCCCHHHHHHHHHHHHHHHHHHHHh
Q 000265 1235 TGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREK--FAGEPEHVINFFFMLAEELREIMSQ 1312 (1760)
Q Consensus 1235 tG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~--~~g~~e~V~n~~~~l~~ELr~~Ma~ 1312 (1760)
||.||+||++||||+|+|||++|+++||+|||+||+|+||+|||||||+||++ |.+.+++|+|||.++++|++++|+.
T Consensus 385 Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~ 464 (485)
T COG0069 385 TGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAA 464 (485)
T ss_pred CHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 8899999999999999999999999
Q ss_pred cCCCChhhhcCCCceeecc
Q 000265 1313 LGFRTITEMIGRSDMLEVD 1331 (1760)
Q Consensus 1313 lG~~si~ELigr~dLl~~~ 1331 (1760)
+|+++++||+||.|+|...
T Consensus 465 lG~~~l~el~g~~d~L~~~ 483 (485)
T COG0069 465 LGKRSLSELIGRTDLLRTK 483 (485)
T ss_pred hCCCCHHHHhcchhhhhcc
Confidence 9999999999999998753
No 5
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=100.00 E-value=8.5e-106 Score=913.09 Aligned_cols=286 Identities=52% Similarity=0.869 Sum_probs=230.9
Q ss_pred HHHHHcCCCHHHHHHhHHHHHhcccccccccCCCCCccccccCccchhHHHhhhcccccCCCCCcccccceeeeeeeecC
Q 000265 590 APLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGP 669 (1760)
Q Consensus 590 ~~~~~fgyt~E~~~~~l~pma~~g~E~igSMG~D~plA~ls~~~~~l~~yFkQ~FAQVTNPPID~iRE~~vmSl~~~~G~ 669 (1760)
++|++||||.||++++|.|||++|+||||||||||||||||++|++|||||||+||||||||||||||++||||+|+|||
T Consensus 2 ~~q~aFGyt~Ed~~~~l~pMa~~G~EpigSMG~DtPLAvLS~~~~~l~~YFkQ~FAQVTNPPID~iRE~~vmSl~~~lG~ 81 (287)
T PF04898_consen 2 RRQRAFGYTQEDLDMVLEPMAETGKEPIGSMGDDTPLAVLSEKPQNLFDYFKQLFAQVTNPPIDPIREELVMSLRTYLGP 81 (287)
T ss_dssp HHHHCTT--HHHHHCTCHHHHHHSS--EE-S---S--CCC-SS---GGGCEEE----SSS----TTTTGGG-B--EEES-
T ss_pred hhHHHhCCCHHHHHHHHHHHHhcCCcccccCCCCChhHhhcCCCCcHHHHHHHhhhhccCCCcchhhhhheeecceeeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCccceEEecCCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEE
Q 000265 670 EGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVL 749 (1760)
Q Consensus 670 ~~n~l~~~~~~~~~l~l~sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliL 749 (1760)
++|+|++++++|++|+|.||||+++||++|++++.+.|++.+|+++|+..++.++|++||++||++|++||++|++||||
T Consensus 82 ~~n~l~~~~~~~~~l~l~sPiL~~~~l~~l~~~~~~~~~~~~l~~~f~~~~~~~~L~~aL~~l~~ea~~Av~~G~~ilIL 161 (287)
T PF04898_consen 82 RPNILEETPEHARRLELDSPILSNGQLEKLRSLDDPGFKAATLDATFPAEGGDEGLEEALDRLCEEAEAAVREGANILIL 161 (287)
T ss_dssp -S-TTS-SGGGC-CEEESSSB--HHHHHHHHHH--CCCCEEEEESEEESTTSTTCHHHHHHHHHHHHHHHHHCT-SEEEE
T ss_pred CCCCCCCCCCCceEEEecCCEECHHHHHHHHHhhccCCCccEEEEEEECCcChhHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 99999999999999999999999999999999988999999999999999888999999999999999999999999999
Q ss_pred cCCCCCCCCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccccHHHHHHHHHHHHHcCCCCC
Q 000265 750 SDRAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPP 829 (1760)
Q Consensus 750 sDr~~~~~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av~Pyla~e~~~~~~~~~~~~~ 829 (1760)
|||+++++++|||+|||||||||||++.|+|+++||||||||+||+||||||+||||||||||||||++.+|.++|.+
T Consensus 162 sDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYla~e~~~~~~~~~~~-- 239 (287)
T PF04898_consen 162 SDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYLAYETIRELAERGEL-- 239 (287)
T ss_dssp ESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHCCHHHHHHCCCCCCC--
T ss_pred CCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHHHHHHHHHHHhcCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccccchhhhcCCCH
Q 000265 830 KASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSS 881 (1760)
Q Consensus 830 ~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~gaqiFeavGl~~ 881 (1760)
. +++.+++++||++|++|||+|||||||||||+||+||||||||||++
T Consensus 240 ---~-~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqiFeaiGL~~ 287 (287)
T PF04898_consen 240 ---P-ELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQIFEAIGLSQ 287 (287)
T ss_dssp ---C-T--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--EEESSB--
T ss_pred ---C-CCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccceeeeeccCCC
Confidence 2 57999999999999999999999999999999999999999999985
No 6
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-102 Score=904.62 Aligned_cols=371 Identities=52% Similarity=0.893 Sum_probs=359.0
Q ss_pred CCCCCCCCCCCCceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeecccChHHHHHHHHhcCCCCCC
Q 000265 103 LGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAKNVGFQLPP 182 (1760)
Q Consensus 103 ~gly~p~~E~DaCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~~iP~~ff~~~~~~~g~~lp~ 182 (1760)
+|||||.+||||||||||++++|++||+||+++++||+||+||||+++|+.+|||||+|+++|+.||++.++. |+++|+
T Consensus 1 ~gly~~~~e~daCGig~i~~~~g~~sh~iv~~~~~~L~~m~hRG~~~adg~~gdGagil~~~p~~f~~~~~~~-~~~~p~ 79 (371)
T COG0067 1 QGLYDPAFEHDACGIGGIAHKDGRPSHKIVEDALEALVNLTHRGAPGADGYAGDGAGILLQIPDYFFREEADK-GIKLPE 79 (371)
T ss_pred CCCCCCccccccCcEEEEEecCCCcchhHHHHHHHHHHhhhccCCCCCCcccccCcchhhcCCHHHHHHHHhc-ccCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999997765 999999
Q ss_pred CCcceEEeEecCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCCCCCCccccCCCeEEEEEEcCCCCChhhHHHHHH
Q 000265 183 PGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPSLRSKVDFENQMY 262 (1760)
Q Consensus 183 ~g~YavG~~Flp~d~~~~~~~~~~ie~~~~~~gl~vlgwR~VPvd~~~lG~~a~~~~P~I~Q~fv~~~~~~~~~fer~Ly 262 (1760)
.|.|+|||+|+|++ +.+|++++++.+.++|+.|++||.||++++++|+.+.+++|.|.|+||. .+..+||++||
T Consensus 80 ~~~y~vg~~fl~~~---~~~~~~i~~~~~~~e~~~vlgwR~vp~~~~~~g~~a~~~~p~~~qv~i~---~~~~~~e~~l~ 153 (371)
T COG0067 80 AGFYAVGMVFLPQE---RAAAREIPEEEAVAEGLSVLGWRDVPVNSSVLGEVALATMPRIEQVFIG---ASGDDFERVLF 153 (371)
T ss_pred cccccceEEEeccc---hhhhhhhhhHHHhhcCCceeeEEecccCchhcchhhhhcCCchheeEee---cCchhhhhhhh
Confidence 99999999999987 6689999999999999999999999999999999999999999999997 45679999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCcEEEEEecCCeEEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCC
Q 000265 263 ILRRVSMAAIRESLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRA 342 (1760)
Q Consensus 263 ~lRk~~e~~i~~~~~~~~~~~~~~yI~SlS~~tivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~A 342 (1760)
+.||++ ++++. .+|||||+|++|+||||||+|.||.+||+ ||++++|+|++||+|+||||||+|+|.+|
T Consensus 154 i~r~~~----~~~~~------~~~yv~S~s~~t~VYKG~~~p~~V~~~y~-dl~~~~~~s~~~l~HsRFSTNT~p~W~~A 222 (371)
T COG0067 154 IARKRI----EKRIG------ADFYVCSLSSRTIVYKGVGLPEDVAEFYL-DLDDERYKSAIALVHTRFSTNTFPSWPLA 222 (371)
T ss_pred hhhhhh----hhccc------CCEEEEecCCCeEEEecccCHHHHHHHHh-hccchhhceeEEEEEeccCCCCCCCCCcc
Confidence 999999 55543 27999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCceeeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcC
Q 000265 343 QPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMI 422 (1760)
Q Consensus 343 QPfr~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~i 422 (1760)
||||++||||||||+++|+|||++|+..++|+.|+ +++.++.|++...+|||..|||+||+++..|+++++|+||++
T Consensus 223 HPfr~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~---e~~a~l~p~~~~~~sDs~~~dn~lE~l~~~G~~l~~a~~m~~ 299 (371)
T COG0067 223 HPFRLLVHNGEINTYGGNRNWLEARGYKFESPTDG---EVLAKLLPILMRGGSDSASLDNALELLLLGGRDLYHAAMLLG 299 (371)
T ss_pred CcceeeeecceecccccHHHHHHHhhcccccCccH---HHHHHHHHHhcccCCcchhhhHHHHHHHhcCcCchhHHHhcC
Confidence 99999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEecccc
Q 000265 423 PEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGV 494 (1760)
Q Consensus 423 Peaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~ga 494 (1760)
|+||++++.|+++.++||+|++++|||||||+.++|+||++++|.||||||||.||+.|+|+.++++||.|+
T Consensus 300 P~aw~~~~~~~~~~~afye~~~~l~epwdGpa~~~f~dgse~gA~ldrngLrp~Ry~~t~d~~vv~~se~gv 371 (371)
T COG0067 300 PEAWVVGTDMDPEGRAFYEDHSALMEPWDGPADIVFTDGSEEGAILDRNGLRPARYWITKDGEVVVASEAGV 371 (371)
T ss_pred chhhccCCCCCcceEEEEehhhhCCCCccCCcceeEEeeeeeeeeeccCCCCcceEEEecCCEEEEEEeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999885
No 7
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=100.00 E-value=1.5e-98 Score=886.84 Aligned_cols=361 Identities=54% Similarity=0.967 Sum_probs=315.0
Q ss_pred ceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeecccChHHHHHHHHhcCCCCCCCCcceEEeEecC
Q 000265 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLP 194 (1760)
Q Consensus 115 CGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~~iP~~ff~~~~~~~g~~lp~~g~YavG~~Flp 194 (1760)
|||||||+++|++||+||++++++|++|+||||| |++|||||||+++|||+||++..+..++.||+.++|||||+|+|
T Consensus 1 CGiG~ia~~~g~~s~~iv~~~l~~L~~m~HRG~~--d~~tGDGAGi~~~ip~~ff~~~~~~~~~~l~~~~~yavg~~Flp 78 (361)
T PF00310_consen 1 CGIGFIANIKGKPSHDIVDDALEALKRMEHRGGV--DGNTGDGAGILTDIPHDFFRKELKKAGINLPEKGDYAVGMFFLP 78 (361)
T ss_dssp -EEEEEEETTS--BSHHHHHHHHHHHHHGGGSTB--TSSCESEEEEEEE-THHHHHHHHHHCT----SGCGEEEEEEEE-
T ss_pred CEEEEEEeCCCCCchHHHHHHHHHHhcccccCCC--CCCCCcceEEEEechhHHHHHHHhhhccccccccccceeeeeCC
Confidence 9999999999999999999999999999999999 99999999999999999999887778999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCCCCCCccccCCCeEEEEEEcCCCCChhhHHHHHHHHHHHHHHHHHH
Q 000265 195 QSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNSALQTEPVVEQVFLTPSLRSKVDFENQMYILRRVSMAAIRE 274 (1760)
Q Consensus 195 ~d~~~~~~~~~~ie~~~~~~gl~vlgwR~VPvd~~~lG~~a~~~~P~I~Q~fv~~~~~~~~~fer~Ly~lRk~~e~~i~~ 274 (1760)
++...+++ +++|++.++++|++||+||+||||+++||+.|++++|.|||+||.++.. ..+||++||++||++| +
T Consensus 79 ~~~~~~~~-~~~ie~~~~~~g~~vl~wR~vpv~~~~lg~~a~~~~P~i~Q~fv~~~~~-~~~~e~~l~~~rk~~e----~ 152 (361)
T PF00310_consen 79 RDEEQREE-KEIIEEVLEEEGLEVLGWREVPVNPSVLGPIARKTEPLIWQVFVAPPEG-EEEFERRLYLIRKRIE----K 152 (361)
T ss_dssp SSHHHHHH-HHHHHHHHHHTT-EEEEEEE--B-GGGS-HHHHHC--EEEEEEEE-TT--HHHHHHHHHHHHHHHH----H
T ss_pred CCHHHHHH-HHHHHHHHHHhcCeEEeEecCCcChhhccHhHHhcCCcEEEEEEECCcc-hhhHHHHHHHHHHHHH----H
Confidence 99887777 9999999999999999999999999999999999999999999987654 7899999999999994 4
Q ss_pred hhhhccCCCCcEEEEEecCCeEEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCceeeeccccc
Q 000265 275 SLNLEHGGAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGEI 354 (1760)
Q Consensus 275 ~~~~~~~~~~~~yI~SlS~~tivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~laHNGEI 354 (1760)
..... +.|||||||++||||||||+|+||.+||+ ||++++|+|++||+|+||||||+|+|.+||||+++||||||
T Consensus 153 ~~~~~----~~~yv~SlS~~tivYKg~~~~~~l~~~y~-Dl~~~~~~s~~~i~H~RysTnt~p~w~~AqPf~~laHNGeI 227 (361)
T PF00310_consen 153 AIEED----DAFYVCSLSSRTIVYKGMGTPEQLAEFYP-DLQDEDFKSHFAIGHQRYSTNTFPSWENAQPFRALAHNGEI 227 (361)
T ss_dssp HHCCH----TTBEEEEEESSEEEEEECC-GGGHHHHCC-GGGCTTEEBSEEEEEEEE-SSSSCSGGGSSSEEEEEEEEEE
T ss_pred hhhhc----CCEEEEecCcchhhhhhccCHHHHHHHHH-hhccccccceEEEEEEecCCCCCCcchhcChHHHhhhcccc
Confidence 33322 34999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000265 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
||+++|++||++|+..+.++.|| +++++.||+..++||||+||++||++++.|+++++|+|||+||+|++++.|++
T Consensus 228 nt~~~n~~~l~~r~~~~~~~~~~----~~~~~~pi~~~~~SDS~~l~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~ 303 (361)
T PF00310_consen 228 NTIRGNRNWLEARGYKLNSPLFG----DLKELLPIVNPGGSDSEVLDNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSP 303 (361)
T ss_dssp TTHHHHHHHHHHHCCCBSSTTCG----HHHCC-SSS-TTS-HHHHHHHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTH
T ss_pred ccHHHHHHHHHhhcccccCcccc----chhhcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHhhCCcccccCccCCH
Confidence 99999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEecc
Q 000265 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEV 492 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~ 492 (1760)
++++||+|++++||||||||+|+|+||+.++|++|||||||+||+.++|+.|++|||+
T Consensus 304 ~~~~~y~~~~~~~~~~dGPaai~~~~g~~~~a~~Dr~GLRP~~~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 304 EKRAFYEYHASLMEPWDGPAAIIFTDGNGVGAFLDRNGLRPLRYGITEDGLVVLASEA 361 (361)
T ss_dssp HHHHHHHHHHHHHCC--CCEEEEEECSSEEEEEE-TT--S--EEEEETTCEEEEESST
T ss_pred HHHHHHHHHHHhhccCCCceEEEEEeCCEEEEEECCCCCcceEEEEECCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999888889999999995
No 8
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=100.00 E-value=1.3e-82 Score=747.67 Aligned_cols=364 Identities=53% Similarity=0.799 Sum_probs=283.4
Q ss_pred cccCHHHHHHHHHHHhcCCHHHHHHHHHHHhhcccCcccccccccccCCCC-CCCCCCCCccccccceEecCCCcccCcH
Q 000265 945 HLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVK-IPLEEVEPASEIVKRFCTGAMSYGSISL 1023 (1760)
Q Consensus 945 H~~~P~~i~~lq~a~r~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~-i~~~eVe~~t~i~~Pf~i~aMS~Gsls~ 1023 (1760)
|.|+|++++.||+|++.+++..|+.|++..++...+.++|++|+|+....+ |+.+++++..++..||++++||||+||+
T Consensus 1 h~~~p~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~~~~~~~i~~~~~~~p~~l~~p~~is~MS~GaLS~ 80 (368)
T PF01645_consen 1 HAYNPEVIKLLQKAVRVNSYESYKEYRERVNEREFPSALRDLLEFKYDEAPSIPGEKVEKPLELSIPFMISAMSYGALSE 80 (368)
T ss_dssp -SS-HHHHHHHHHHHHCT-HHHHHHHHHHHHTS--S-SGGGGEEE--SS-----GGGS--HHHHHTTEEEEEB-CTTC-H
T ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccccCcccccccCCCCcCchhhcCChhhheeeeecccCChhhcCH
Confidence 999999999999999999999999999999987778999999999765444 8899999888899999999999999999
Q ss_pred HHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhh-eeecccCCcCCChhhhcCchhHHHhhhccCCCCCCC
Q 000265 1024 EAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSA-IKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGG 1102 (1760)
Q Consensus 1024 ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~-IkQvasgrFGVt~~~L~~a~~iqIKiaQGAKpGeGG 1102 (1760)
+++++||+||+++|+.+||||||++|+++.. .... |+|++|++|||++++|.++++||||++||||||+||
T Consensus 81 ~a~~Ala~ga~~~G~~~ntGEGg~~~~~~~~--------~~~~~I~Q~~sg~fGv~~~~l~~a~~iEIKigQGAKpG~GG 152 (368)
T PF01645_consen 81 EAKEALAKGANMAGTASNTGEGGELPEERKA--------AKDLRIKQIASGRFGVRPEYLKQADMIEIKIGQGAKPGEGG 152 (368)
T ss_dssp HHHHHHHHHHHHCT-EEEETTT---GGGCSB---------TTSSEEEE-TT-TT--HHHHCC-SEEEEE---TTSTTT--
T ss_pred HHHHHHHHHHHHhCceEecCCCCCCHHHhcc--------cCCceEEEcCCCCCCCCHHHhcCCCeEEEEEecCccccCcc
Confidence 9999999999999999999999999998852 1234 999999999999999999999999999999999999
Q ss_pred CCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEE
Q 000265 1103 ELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVL 1182 (1760)
Q Consensus 1103 ~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~Iv 1182 (1760)
+||+.||+++||++|+.+||++++||++||||||+|||.++|++||+.+|++||+||+++..++.+++..++++|+|+|+
T Consensus 153 ~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~It 232 (368)
T PF01645_consen 153 HLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFIT 232 (368)
T ss_dssp EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEE
T ss_pred eechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcc
Q 000265 1183 ISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGC 1262 (1760)
Q Consensus 1183 IsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc 1262 (1760)
|||++||||++|+++++++|+||+.+|++++++|+++|+|++|.||++|||+|+.||+||++||||+|+|||++|+|+||
T Consensus 233 IDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC 312 (368)
T PF01645_consen 233 IDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIALGC 312 (368)
T ss_dssp EE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT-
T ss_pred EeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCcccccChhhHhhc--CCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000265 1263 IMMRKCHKNTCPVGIATQDPVLREKF--AGEPEHVINFFFMLAEELREIMSQLGFR 1316 (1760)
Q Consensus 1263 ~~~r~ch~~~cP~giatqdp~Lr~~~--~g~~e~V~n~~~~l~~ELr~~Ma~lG~~ 1316 (1760)
+|||+||+|+||+||+||||+|++++ .+++++|.|||..+.+||+++|+.+|++
T Consensus 313 ~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el~~~~~a~G~~ 368 (368)
T PF01645_consen 313 IQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEELREILAALGKR 368 (368)
T ss_dssp -S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred HHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999666 5779999999999999999999999985
No 9
>COG0070 GltB Glutamate synthase domain 3 [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-73 Score=650.49 Aligned_cols=289 Identities=54% Similarity=0.860 Sum_probs=274.5
Q ss_pred cCCCCccccCcccCCCCCcccccccccCCCCchhHHHHHHHHHHHHHHcCCcEEEEecccccCcchhhhhhHHHHHhhcc
Q 000265 1342 ENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHL 1421 (1760)
Q Consensus 1342 ~~ldls~~l~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~l~~~~~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~ 1421 (1760)
++||||++|. +.. +. .+|...|+|.+...||.+++.. .+++++++++.+..++.|++|++|+++|++|+++||.
T Consensus 2 ~~ldls~~l~-~~~--~~--~~~~~~~~~~~~~~lD~~~~~~-~~~~~n~~~~~~~~~i~N~~r~~g~~~~g~i~~~~G~ 75 (301)
T COG0070 2 KGLDLSPLLY-PED--PN--TYCEKRQDHGLEPVLDAKLLED-KPALENGEIVKILAEIRNVDRSVGANLSGEIAKGYGL 75 (301)
T ss_pred CccccccccC-ccc--cc--ccccccccccccccccchhccc-chhhhccCceEEEeeccceEEeeecccCCceeeeeCc
Confidence 5799999999 442 22 7778889999999999999988 9999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEE
Q 000265 1422 VGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEA 1501 (1760)
Q Consensus 1422 ~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i 1501 (1760)
.|||+++|+|+++|+||||||||+.+|++|+|+|||||||||||+||+|||+|| ++|++++|+|+||+|+||||||++
T Consensus 76 ~gl~~~~i~i~~~GsaGqsfGaf~~~G~~l~l~GdAnDyvGkgmsgG~IVV~~~--~~~~~~~~~i~Gn~~lyGatgG~~ 153 (301)
T COG0070 76 QGLPEDTVEINFNGSAGQSFGAFNAKGPTLELNGDANDYVGKGMSGGKIVVRGP--ARFKAEANIIVGNTVLYGATGGEL 153 (301)
T ss_pred CCCCCCcEEEEEEeccchhhhhhhcCCCEEEEEeccCCcccCCCCCcEEEEECC--CcccccCCceecceEEEeccCcEE
Confidence 999999999999999999999999889999999999999999999999999999 589999999999999999999999
Q ss_pred EEecccccccccccCCcEEEEcCCCccccccccCcEEEEeCCCCCcccCCCcceEEEEEcCCc-hhhcccCccceeeecC
Q 000265 1502 YFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDG-KFRSRCNPELVDLDKV 1580 (1760)
Q Consensus 1502 ~v~G~aGeR~gvr~sG~~iVV~G~Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~~~~-~~~~~~n~~~V~l~~~ 1580 (1760)
||+|+||+||||||||+++||||+|||+|||||||+|||||++|+|||+||+||+|||+|+++ +|..++|.++|+++++
T Consensus 154 fi~G~AGeRfaVrnsG~~~VVeG~GD~~cEYMtGG~VvVLG~~G~nfgaGMsGG~aYV~~~~~~~f~~~~n~~~ve~e~~ 233 (301)
T COG0070 154 FIRGNAGERFGVRNSGATAVVEGIGDHGCEYMTGGRVVVLGDTGRNFGAGMSGGVAYVRGEVGSDFPLGVNAELVELESL 233 (301)
T ss_pred EEecCceeeEEEEccCceEEEeccCcceecccCCCEEEEeCCcchhhcCcccceEEEEecCccchhhcCccceEEEeccC
Confidence 999999999999999999999999999999999999999999999999999999999999998 7999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcHHHHHHHhhhhhcCCCeEEEcccchHHHHHHHHHHH
Q 000265 1581 EEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKVAA 1638 (1760)
Q Consensus 1581 ~~~~d~~~L~~ll~~h~~~t~s~~a~~iL~~w~~~~~~F~kv~P~~y~~~l~~~~~~~ 1638 (1760)
++++++++|++||++|+++|+|+.|++||+||+.+.++|+||+|++|++.+...+..+
T Consensus 234 ~~ed~~~~L~~li~~h~~~t~s~~a~~iL~~w~~~~~~f~kv~P~~~~~~~~~~~~~~ 291 (301)
T COG0070 234 TEEDEEEKLKELIEEHVEYTGSEKAKEILENWELYEEKFVKVKPREYRPFLLLNADAE 291 (301)
T ss_pred CcHHHHHHHHHHHHHHHHhhCCHHHHHHHhhHHhhhhhEEEEcchhhhhhhhhhHHHH
Confidence 8755559999999999999999999999999999999999999999999987665443
No 10
>cd00982 gltB_C gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the transfer of ammonia and electrons among three distinct active centers that carry out L-Gln hydrolysis, conversion of 2-oxoglutarate into L-Glu, and electron uptake from a donor. These catalytic sites appear to occur in other domains within the protein, and not the domain in this CD. This particular domain has no known function, but it likely has a structural role as it interacts with the amidotransferase and FMN-binding domains of gltS.
Probab=100.00 E-value=1.6e-69 Score=605.22 Aligned_cols=250 Identities=66% Similarity=1.049 Sum_probs=245.7
Q ss_pred HHHHHHHHHHHHH-HcCCcEEEEecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEE
Q 000265 1376 LDQKLIKLSKAAL-EKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELE 1454 (1760)
Q Consensus 1376 ld~~~~~~~~~~l-~~~~~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~ 1454 (1760)
||++||++++++| +++++++++++|.|+||++||+||++|+|+||+.|||+++|+|+++|+|||||||||++|++|+|+
T Consensus 1 ld~~~i~~~~~~~~~~~~~~~~~~~i~N~dRsvGt~ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~ 80 (251)
T cd00982 1 LDDKLIADAEPALIENGEPVTLEYPIRNTDRAVGTMLSGEIAKRYGEEGLPEDTIKIKFEGSAGQSFGAFLAKGVTLELE 80 (251)
T ss_pred ChHHHHHHHHHHHHhcCCeEEEEeeeEecccchhhHHHHHHHHHhcccCCCCCcEEEEEEcCCCceeeeecCCCCEEEEE
Confidence 6899999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEecccccccccccCCcEEEEcCCCcccccccc
Q 000265 1455 GDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMT 1534 (1760)
Q Consensus 1455 G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G~Gd~~~eyMt 1534 (1760)
|||||||||+|+||+|+|+|++++.|.+++|+|+||+|+||||||+|||+|+||+|||+|||||++||+|+|||+|||||
T Consensus 81 G~A~dyvGk~m~GG~IvV~g~~~~~~~~~~~~i~Gn~~~~GmtgG~i~i~G~AG~R~gvr~sG~~iVV~G~Gd~~~EyMt 160 (251)
T cd00982 81 GDANDYVGKGLSGGRIVVRPPKDATFKPEENIIIGNVCLYGATSGEAFIRGRAGERFAVRNSGATAVVEGVGDHGCEYMT 160 (251)
T ss_pred ecccccccccccCCEEEEECCCcccccccccceehhhhhhccCCCEEEEeccccceeeeccCCCEEEEEecccceecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCcccCCCcceEEEEEcCCchhhcccCccceeeecCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhhhhh
Q 000265 1535 GGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADFEN 1614 (1760)
Q Consensus 1535 gG~ivVlG~~G~~~gagM~gG~iyv~~~~~~~~~~~n~~~V~l~~~~~~~d~~~L~~ll~~h~~~t~s~~a~~iL~~w~~ 1614 (1760)
||+|||||++|+|+|+||+||+|||+|++++|.+++|+++|++.++++++|+++|++||++|+++|+|+.|++||+||++
T Consensus 161 GG~ivVlG~~G~~~gaGM~gG~iyv~~~~~~~~~~~n~~~V~~~~l~~~~d~~~l~~ll~~h~~~t~s~~a~~iL~~~~~ 240 (251)
T cd00982 161 GGTVVVLGKTGRNFAAGMSGGVAYVLDEDGDFEKKVNHEMVDLERLEDAEDEEQLKELIEEHVEYTGSEKAKEILANWEA 240 (251)
T ss_pred CCEEEEECCCCcCcccCCCCCEEEEECCcCChhhhcCHhhEeeccCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999997578999999999999999999999999999999
Q ss_pred cCCCeEEEccc
Q 000265 1615 LLPKFIKVFPR 1625 (1760)
Q Consensus 1615 ~~~~F~kv~P~ 1625 (1760)
++++||||+|+
T Consensus 241 ~~~~F~~v~P~ 251 (251)
T cd00982 241 YLKKFVKVIPR 251 (251)
T ss_pred HhCcEEEEEeC
Confidence 99999999995
No 11
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=100.00 E-value=3.8e-62 Score=585.70 Aligned_cols=360 Identities=53% Similarity=0.782 Sum_probs=321.4
Q ss_pred cCCHHHHHHHHHHHhhcc-cCcccccccccccCCCCCCCCC-------------CCCccccccceEecCCCcccCcHHHH
Q 000265 961 GNSVAAYKEYSKRIQELN-KTCNLRGLLKFKEADVKIPLEE-------------VEPASEIVKRFCTGAMSYGSISLEAH 1026 (1760)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~-~~~~~r~ll~~~~~~~~i~~~e-------------Ve~~t~i~~Pf~i~aMS~Gsls~ea~ 1026 (1760)
.+.+..|..|.+..+... ...++|+++.|.......++.+ +.....+..||++++||||++|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~s~~a~ 95 (392)
T cd02808 16 FNRAERYGVYNRAGNSRGRPFGTLRDLLEFGAQLAKHPLEPDEEVDDRVTIGPNAEKPLKLDSPFNISAMSFGALSKEAK 95 (392)
T ss_pred cCcHHHHHHHHHhhcCCCCCCCChhhhhhcCcccccCCCCcccccccceeeccccCCccccccceEecCCCCCcccHHHH
Confidence 345677888888766542 3468899997753222222221 12222334599999999999999999
Q ss_pred HHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeecccCCcCCChhhhcCchhHHHhhhccCCCCCCCCCCC
Q 000265 1027 TTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPG 1106 (1760)
Q Consensus 1027 ~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgrFGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg 1106 (1760)
.+||.||+++|+.+++|||+++|+++. .....++|+++++|||+.+++..+++||||++||||||.||+||+
T Consensus 96 ~aLa~aa~~aG~~~~~Gegg~~~~~~~--------~~~~~i~q~~~~~fGv~~~~~~~~~~ieik~~QGAkpg~gg~l~~ 167 (392)
T cd02808 96 EALAIGAALAGTASNTGEGGELPEERE--------GGGDIIKQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGHLPG 167 (392)
T ss_pred HHHHHHHHhcCCceeecCCCCCHHHHh--------hhhheEEEecCCCCccCHHHcccCcEEEEEeccCCCCCCCCcccc
Confidence 999999999999999999999999874 134689999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecC
Q 000265 1107 HKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGH 1186 (1760)
Q Consensus 1107 ~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~ 1186 (1760)
.||+.+||..||.++|++++||++||||++++++.++|++||+.++++||+||++......+++..+.++|+|+|+|||+
T Consensus 168 ~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~ 247 (392)
T cd02808 168 EKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGA 247 (392)
T ss_pred ccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999866999999987656677888777778999999999
Q ss_pred CCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcccccc
Q 000265 1187 DGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMR 1266 (1760)
Q Consensus 1187 ~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r 1266 (1760)
+||||++++..++++|+|++.+|+++++++...++|++++|+++|||+||.||+||++||||+|++||++|++++|.|+|
T Consensus 248 ~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~ 327 (392)
T cd02808 248 EGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQAR 327 (392)
T ss_pred CCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcccccChhhHhhc--CCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceee
Q 000265 1267 KCHKNTCPVGIATQDPVLREKF--AGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLE 1329 (1760)
Q Consensus 1267 ~ch~~~cP~giatqdp~Lr~~~--~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~ 1329 (1760)
+||+|+||+||+||+|.+++++ ..++++|.||+..+.+||+++|+.+|++++++| +++||+.
T Consensus 328 ~c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l-~~~~l~~ 391 (392)
T cd02808 328 KCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELL-GRSDLLA 391 (392)
T ss_pred hcCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCCChHHC-CHHHhhc
Confidence 9999999999999999997665 467999999999999999999999999999996 8888764
No 12
>cd00981 arch_gltB Archaeal-type gltB domain. This domain shares sequence similarity with a region of unknown function found in the large subunit of glutamate synthase, which is encoded by gltB and found in most bacteria and eukaryotes. It is predicted to be homologous to the C-terminal domain of glutamate synthase based upon sequence similarity coupled with genome organization data, showing that this domain is found in a gene cluster with other domains of Glts, which are annotated. This domain is found primarily in archaea, but is also present in a few bacteria, likely as a result of lateral gene transfer.
Probab=100.00 E-value=3.6e-39 Score=360.06 Aligned_cols=203 Identities=31% Similarity=0.500 Sum_probs=174.5
Q ss_pred HHHHHcCCcEEEEecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcC
Q 000265 1385 KAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKG 1464 (1760)
Q Consensus 1385 ~~~l~~~~~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkg 1464 (1760)
..+++++.. .+.+.-...+|++|+ ||+ .+++|+++|++||++|+|| +|++|+|+|||+||||++
T Consensus 18 ~~~~~~g~~-~~~i~n~~g~~~ig~-------------gl~-~~~~I~v~G~aG~~~G~~m-~gg~I~v~Gna~d~~G~~ 81 (232)
T cd00981 18 REAVEKGAD-EIVLDNVLGQRYIGD-------------GLP-GNVRINIYGVPGNDLGAFM-SGPTIIVYGNAQDDVGNT 81 (232)
T ss_pred HHHHHcCCC-eEEEECCCCceeccc-------------CCC-CCEEEEEEecCcHHHHhhc-CCCEEEEEecchhhhhcc
Confidence 334556554 344433445566666 465 5788999999999999999 699999999999999999
Q ss_pred CCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEecccccccccccC-----CcEEEEcC-CCccccccccCcEE
Q 000265 1465 LSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNS-----GARAVVEG-VGDHGCEYMTGGTV 1538 (1760)
Q Consensus 1465 msGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~s-----G~~iVV~G-~Gd~~~eyMtgG~i 1538 (1760)
|+||+|+|+|+ +||+++|+|+||+|+|+|+||+|+|+||+ ||+|||+| +|||+||||+||+|
T Consensus 82 m~GG~I~V~G~------------aG~~~g~~m~GG~i~V~G~aG~r~G~~m~~~~~~gg~ivV~G~aGd~~ge~M~gG~i 149 (232)
T cd00981 82 MNDGKIVIHGS------------AGDVLGYAMRGGKIFIRGNAGYRVGIHMKEYKDKVPVLVIGGTAGDFLGEYMAGGVI 149 (232)
T ss_pred ccCcEEEEECC------------hHHHHHhhCcCcEEEEEecchhhhhhhcccccCCCCEEEEEeccCccccccccCCEE
Confidence 99999999999 89999999999999999999999999999 99999999 79999999999999
Q ss_pred EEeCC------CCCcccCCCcceEEEEEcCCchhhcccCccceeeecCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhhh
Q 000265 1539 VVLGK------TGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADF 1612 (1760)
Q Consensus 1539 vVlG~------~G~~~gagM~gG~iyv~~~~~~~~~~~n~~~V~l~~~~~~~d~~~L~~ll~~h~~~t~s~~a~~iL~~w 1612 (1760)
||+|+ +|.++|++|+||+|||++..+. .++|.+.+ +.+++ ++|+++|+.+|++|.++|+|+++ ++++
T Consensus 150 vV~G~~~~~~~~G~~~G~gM~gG~i~v~G~~~~--~~~~~~~~-~~~~~-~~d~~~L~~li~~~~~~~~~~~~-~~~~-- 222 (232)
T cd00981 150 IVLGLGTDEEPVGRYIGTGMHGGVIYIRGKVER--SKLGKEVP-KFELT-EEDLEFIEKYIEEFCKEFGYDKA-EILD-- 222 (232)
T ss_pred EEECCCcccccccccccCCCcceEEEEEcCCCc--cccCcCcE-EecCC-HHHHHHHHHHHHHHHHHHCccHH-HHhh--
Confidence 99999 9999999999999999998764 35666644 55564 68999999999999999999997 4443
Q ss_pred hhcCCCeEEEcccc
Q 000265 1613 ENLLPKFIKVFPRD 1626 (1760)
Q Consensus 1613 ~~~~~~F~kv~P~~ 1626 (1760)
..|.|+.|++
T Consensus 223 ----~~~~kl~~~~ 232 (232)
T cd00981 223 ----EEFTKLKPKS 232 (232)
T ss_pred ----cCceEEecCC
Confidence 6788999863
No 13
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=100.00 E-value=1.3e-35 Score=337.78 Aligned_cols=198 Identities=25% Similarity=0.316 Sum_probs=168.4
Q ss_pred EEEEEecCCeEEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee----eeccccccChhhHH
Q 000265 286 FYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI----LGHNGEINTLRGNV 361 (1760)
Q Consensus 286 ~yI~SlS~~tivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~----laHNGEInt~~gN~ 361 (1760)
+|+.|++++..+||++|++.+|+++|. + +.++++++|+|+||||++.++|.++|||.. ++|||||+|++.++
T Consensus 45 ~~~~s~~~~~~~~K~~G~~~~v~~~~~--~--~~~~~~~~igH~R~aT~g~~~~~n~qP~~~~~~~lvhNG~I~N~~~lr 120 (249)
T cd01907 45 AFVYSSGKDMEVFKGVGYPEDIARRYD--L--EEYKGYHWIAHTRQPTNSAVWWYGAHPFSIGDIAVVHNGEISNYGSNR 120 (249)
T ss_pred eEEEecCCCeEEEeeccCHHHHHhhcC--c--hheEEEEEEEEEeccCCCCCCccCCCCeecCCEEEEeCCeecCHHHHH
Confidence 688898888889999999999999885 4 678999999999999999999999999975 79999999999999
Q ss_pred HHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHH
Q 000265 362 NWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYE 441 (1760)
Q Consensus 362 n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYe 441 (1760)
+++..+. ..+.+.||||++.++++.+.+.+.++.+|+++++ .|++++++||.
T Consensus 121 ~~L~~~g--------------------~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~~~~i--------~~~~~~~~~~~ 172 (249)
T cd01907 121 EYLERFG--------------------YKFETETDTEVIAYYLDLLLRKGGLPLEYYKHII--------RMPEEERELLL 172 (249)
T ss_pred HHHHhcC--------------------CCCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHh--------cCCHhHHHHHH
Confidence 9885332 2357899999999999877665568899998887 68999999998
Q ss_pred H--HHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCC-CcEEEccccCCCcEEEE
Q 000265 442 Y--FSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPP-EDVLRKGRLNPGMMLLV 516 (1760)
Q Consensus 442 y--~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~-~~vv~kgrl~PGeml~v 516 (1760)
+ ....++.|||||++++.+++.+.++|||+|+||+ |++..++.|++|||.++|+..+ .+....++|+|||++++
T Consensus 173 ~~~~~~~~~~l~G~~a~~~~~~~~~~~~RD~~G~rPL-~~g~~~~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~v~~ 249 (249)
T cd01907 173 ALRLTYRLADLDGPFTIIVGTPDGFIVIRDRIKLRPA-VVAETDDYVAIASEECAIREIPDRDNAKVWEPRPGEYVIW 249 (249)
T ss_pred HHHHHhCcccCCCCEEEEEEeCCeEEEEecCCCCccE-EEEEECCEEEEEEcHHHHhccCccchheEecCCCCceEeC
Confidence 7 5667899999999888888778889999999999 6888888999999999997442 21222258999999863
No 14
>PF01493 GXGXG: GXGXG motif; InterPro: IPR002489 Glutamate synthase (GltS) is a complex iron-sulphur flavoprotein that catalyses the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the bacterial, yeast and plant pathways for ammonia assimilation []. GltS is a multifunctional enzyme that functions through three distinct active centres carrying out multiple reaction steps: L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. The active centres are synchronised to avoid the wasteful consumption of L-glutamine []. There are three classes of GltS, which share many functional properties: bacterial NADPH-dependent GltS, ferredoxin-dependent GltS from photosynthetic cells, and NAD(P)H-dependent GltS from yeast, fungi and lower animals. The dimeric alpha subunits each consist of four domains: N-terminal amidotransferase domain, the central domain, the FMN binding domain and the C-terminal domain. The C-terminal domain forms a right-handed beta-helix that comprises seven helical turns []. Each helical turn has a sharp bend that is associated with a repeated sequence motif consisting of G-XX-G-XXX-G. This domain does not contain any residues directly involved in catalysis, but has a crucial structural role. This domain is also found in proteins such as subunit C of formylmethanofuran dehydrogenase, which catalyses the first step in methane formation from carbon dioxide in methanogenic archaea. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (FwdC) and a molybdenum-containing isoenzyme (FmdC). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=100.00 E-value=2.2e-35 Score=325.55 Aligned_cols=195 Identities=38% Similarity=0.590 Sum_probs=155.3
Q ss_pred EecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcCCCCceEEEeCCC
Q 000265 1397 ETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPK 1476 (1760)
Q Consensus 1397 ~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~ 1476 (1760)
+..+.|.+|.++..|+.++.+++++..++.+..+|.++|++||+||++|..|.+|+|+|+++||+|++|+||+|+|+||+
T Consensus 2 ~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~g~~G~~~ga~~~~g~~I~V~G~ag~~~G~~m~GG~I~V~Gn~ 81 (202)
T PF01493_consen 2 DEPVINADRFTGRRLNQSIVKRLGEGMLKKDTGTVIINGNAGQRFGAFMSGGLKIVVEGDAGDYVGKGMSGGTIIVKGNA 81 (202)
T ss_dssp -EEE-TT--STTHHHHHHHHHHCTTTSS-TTCEEEEEEEEE-TTTTTT-BTTEEEEEEEEE-STTTTT-ECCEEEEE--T
T ss_pred CeeeEcCCcchhhhhhHHHHHHHhcCCCCCCcEEEEEeCCCCCEEEecCCCCeEEEEEecccchhHhhCCCCEEEEECCc
Confidence 46789999999999999999999998877788889999999999999999998899999999999999999999999998
Q ss_pred CC--CCCCCccccchhhhhccCcccEEEEecccccccccccCCcEEEEcCC-CccccccccCcEEEEeCCCCCcccCCCc
Q 000265 1477 GS--LFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGV-GDHGCEYMTGGTVVVLGKTGRNFAAGMS 1553 (1760)
Q Consensus 1477 ~~--~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G~-Gd~~~eyMtgG~ivVlG~~G~~~gagM~ 1553 (1760)
+. ...-..+..+||+++|||++|+|+|+|+||+|+|++|+|++|+|+|. |+|+|+||+||+|+|+|++|+++|++|+
T Consensus 82 ~~~~~~~~~~~~~~G~~~~~Gm~gG~i~V~G~aG~r~g~~m~gg~iiV~G~~g~~~g~~M~gG~ivV~G~~G~~~g~~m~ 161 (202)
T PF01493_consen 82 GDDDGGGIVVSGSAGDYLGYGMRGGTIFVQGNAGSRAGIRMSGGTIIVEGNAGDFAGEYMTGGTIVVLGDAGDNAGAGMK 161 (202)
T ss_dssp T---SS-GGGSEEC-SSTTTT--CEEEEESSEE-TTTTTT-CCEEEEESEB--SSTTTT-EEEEEEESS-B-SSBTTT--
T ss_pred ccccccceEeeeeeeccccccccceEEEEEeccccceeeecceeEEEEeccccCCeeecccCCEEEEecCCCcccCCCCC
Confidence 86 33344567789999999999999999999999999999999999995 9999999999999999999999999999
Q ss_pred ceEEEEEcCCc-hhhcccCccceeeecCCC-HHHHHHHHH
Q 000265 1554 GGIAYVLDVDG-KFRSRCNPELVDLDKVEE-EEDIITLRM 1591 (1760)
Q Consensus 1554 gG~iyv~~~~~-~~~~~~n~~~V~l~~~~~-~~d~~~L~~ 1591 (1760)
||+|||+++.+ .|...+|.+.|+.+.|+. +++.++|++
T Consensus 162 gG~I~v~g~~~~~l~~~~~~~~v~~~~i~~~~~~~~~~~~ 201 (202)
T PF01493_consen 162 GGTIYVRGPVEDSLPGFVNEEEVEDEDIEKLDEELKQLKN 201 (202)
T ss_dssp CCEEEEE-TTS-THHHHB-CCCEEEEES-S-CCHHHHHHH
T ss_pred CeEEEEcCCCccccccccceeeeecccccCCHHHHHhhcc
Confidence 99999999998 788999999999999876 567777764
No 15
>cd00504 GXGXG GXGXG domain. This domain of unknown function is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS), in subunit C of tungsten formylmethanofuran dehydrogenase (FwdC) and in subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC). It is also found in a primarily archeal group of proteins predicted to encode part of the large subunit of GltS. It is characterized by a repeated GXXGXXXG motif. GltS is a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the transfer of ammonia and electrons among three distinct active centers that carry out L-Gln hydrolysis, conversion of 2-oxoglutarate into L-Glu, and electron uptake from a donor. These catalytic sites occur in other domains within the protein or or encoded by separate genes, and are not present in the domain in this CD. FwdC and FmdC are reversible ion pumps that catalyze the formylation and deformylation of met
Probab=99.97 E-value=3.3e-32 Score=287.36 Aligned_cols=148 Identities=61% Similarity=0.975 Sum_probs=139.5
Q ss_pred cchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCc
Q 000265 1405 RAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKV 1484 (1760)
Q Consensus 1405 R~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~ 1484 (1760)
|++|++++++|+++ .+++..+++|+++|++||++|++| .|++|+|+|||+||+|++|+||+|+|+||++ +.
T Consensus 1 ~~~g~~~~~~~~~~---~~~~~~~~~i~i~G~~g~~~G~~m-~gg~I~v~G~agd~~G~~m~GG~I~V~g~~~-----~~ 71 (149)
T cd00504 1 RAVGTRGSRYIGKR---PGLPEDTVEIIINGSAGQSFGAFM-AGGTITVEGNANDYVGKGMSGGEIVIHPPAG-----DE 71 (149)
T ss_pred CcEeEeeehhhhhc---cCCCCCcEEEEEEccCchHhhhhc-CCCEEEEEEcCchhhhccccCCEEEEecCCc-----cc
Confidence 56899999999998 567788999999999999999999 6889999999999999999999999999976 45
Q ss_pred cccchhhhhccCcccEEEEecccccccccccCCcEEEEcCC-CccccccccCcEEEEeCCCCCcccCCCcceEEEEEc
Q 000265 1485 NIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGV-GDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLD 1561 (1760)
Q Consensus 1485 ~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G~-Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~ 1561 (1760)
+-.+||.++|+|+||+|+|+|+||+|+|++|+|++|||+|. |+|+||||++|+|+|+|++|.++|++|++|+||+++
T Consensus 72 ~G~ag~~~~~gm~gG~i~V~G~AG~~~G~~m~GG~ivV~G~~g~~~g~~M~gG~ivV~G~~g~~~g~~M~gG~i~v~g 149 (149)
T cd00504 72 NGIAGNVALYGATGGKIFVRGNAGERFGVRMSGGTIVVEGVGDDFGGEYMTGGTIVVLGDAGRNFGAGMSGGVIYVRG 149 (149)
T ss_pred ceeehHhhhhhccCCEEEEEecchhhhhhhccCcEEEEEeecCccccccccCCEEEEeCCCCcCccccCcceEEEEeC
Confidence 66789999999999999999999999999999999999995 889999999999999999999999999999999985
No 16
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=99.96 E-value=2.2e-29 Score=282.93 Aligned_cols=308 Identities=19% Similarity=0.227 Sum_probs=225.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccCc-HHH
Q 000265 956 QEAARGNSVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSIS-LEA 1025 (1760)
Q Consensus 956 q~a~r~~~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsls-~ea 1025 (1760)
+.|..+-+..+|.+|.+.++|+. |..++|.++ || ||..++++.+|.+|+|++ ||+|+|.++..+. +++
T Consensus 9 ~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~-~r-Pr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qkma~pdG 86 (363)
T KOG0538|consen 9 ALAKQQLPKMAYDYYESGAEDQETLDENINAFRRIL-FR-PRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQKMAHPDG 86 (363)
T ss_pred HHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhh-cc-chhheecccccccceeccccccceeEEcchHHHhccCCcc
Confidence 44555557889999999998875 667889988 87 889999999999999997 9999999999874 899
Q ss_pred HHHHHHHHHHcCCc-eeccCCCCCccccCcCC-CC----------CCc------------hhhhheeecccCCcCCChhh
Q 000265 1026 HTTLATAMNKIGGK-SNTGEGGEQPSRMEPLS-DG----------SMN------------PKRSAIKQVASGRFGVSSYY 1081 (1760)
Q Consensus 1026 ~~aLA~Aa~~~G~~-s~sGeGge~~e~~~~~~-~g----------~~~------------~~~s~IkQvasgrFGVt~~~ 1081 (1760)
+.+-|+||.++|+. +.|.-...+.|++.... ++ +++ -.+.++..+...++|.+..+
T Consensus 87 E~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D 166 (363)
T KOG0538|consen 87 ELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESD 166 (363)
T ss_pred cHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccccCchhh
Confidence 99999999999995 55666678888876432 22 000 01122333333344444333
Q ss_pred hcCchhH--HHhhh--ccCCCCCCCCCCCccchHHHHHHhCCCCccc-ccCCCCCCCCCCHHHHHHHHHHHHHhCCCCce
Q 000265 1082 LTNADEL--QIKMA--QGAKPGEGGELPGHKVIGDIAVTRNSTAGVG-LISPPPHHDIYSIEDLAQLIYDLKNANPGARI 1156 (1760)
Q Consensus 1082 L~~a~~i--qIKia--QGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~-lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV 1156 (1760)
+.|-..+ .|++. +|-+-++ +.+.- ..|.. ..+-.+++. .+|+| |.|||..+ +.||
T Consensus 167 ~~n~f~lp~~l~lknfe~~~~~~--------v~~~~------~sg~~~~~~~~id~S-l~W~D----i~wLr~~T-~LPI 226 (363)
T KOG0538|consen 167 IKNKFSLPKNLTLKNFEGLKLTE--------VEEAG------DSGLAAYVSSQIDPS-LSWKD----IKWLRSIT-KLPI 226 (363)
T ss_pred hhhcccCCccccccccccccccc--------CCccc------chhhhhhhhcCCCCC-CChhh----hHHHHhcC-cCCe
Confidence 3331111 11221 1111110 00000 00000 011111221 24566 88999997 9999
Q ss_pred EEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCH
Q 000265 1157 SVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTG 1236 (1760)
Q Consensus 1157 ~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG 1236 (1760)
+||.+-. +..|..|+++|+++|+||+|+|+. .+..+.++.+|+|+.++ +.++++|+.|||+|+|
T Consensus 227 vvKGilt---~eDA~~Ave~G~~GIIVSNHGgRQ--------lD~vpAtI~~L~Evv~a-----V~~ri~V~lDGGVR~G 290 (363)
T KOG0538|consen 227 VVKGVLT---GEDARKAVEAGVAGIIVSNHGGRQ--------LDYVPATIEALPEVVKA-----VEGRIPVFLDGGVRRG 290 (363)
T ss_pred EEEeecc---cHHHHHHHHhCCceEEEeCCCccc--------cCcccchHHHHHHHHHH-----hcCceEEEEecCcccc
Confidence 9997644 467888999999999999998874 56677799999999998 5678999999999999
Q ss_pred HHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000265 1237 RDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFR 1316 (1760)
Q Consensus 1237 ~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~ 1316 (1760)
.||+||+||||.+|.+|++++++++|. +..||..+++.+.+|++..|++.|++
T Consensus 291 ~DVlKALALGAk~VfiGRP~v~gLA~~---------------------------Ge~GV~~vl~iL~~efe~tmaLsGc~ 343 (363)
T KOG0538|consen 291 TDVLKALALGAKGVFIGRPIVWGLAAK---------------------------GEAGVKKVLDILRDEFELTMALSGCR 343 (363)
T ss_pred hHHHHHHhcccceEEecCchheeeccc---------------------------cchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999986 48999999999999999999999999
Q ss_pred ChhhhcCCCceee
Q 000265 1317 TITEMIGRSDMLE 1329 (1760)
Q Consensus 1317 si~ELigr~dLl~ 1329 (1760)
|+.|+ .+..++.
T Consensus 344 sv~ei-~~~~v~~ 355 (363)
T KOG0538|consen 344 SVKEI-TRNHVLT 355 (363)
T ss_pred chhhh-Cccceee
Confidence 99996 7666443
No 17
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.96 E-value=4.9e-28 Score=287.94 Aligned_cols=274 Identities=23% Similarity=0.274 Sum_probs=209.5
Q ss_pred CCCCCCCCCCCCcccccc-----ceEecCCCccc-CcHHHHHHHHHHHHHcCCceeccCCC---CCccccCcCCCCCCch
Q 000265 992 ADVKIPLEEVEPASEIVK-----RFCTGAMSYGS-ISLEAHTTLATAMNKIGGKSNTGEGG---EQPSRMEPLSDGSMNP 1062 (1760)
Q Consensus 992 ~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gs-ls~ea~~aLA~Aa~~~G~~s~sGeGg---e~~e~~~~~~~g~~~~ 1062 (1760)
+.+.+++++||++++|++ ||+++||++|+ ++.+.+.+||++|+++|+.+++|+++ ++|+ +. .
T Consensus 39 ~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~-~~--------~ 109 (352)
T PRK05437 39 ALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE-LA--------D 109 (352)
T ss_pred cCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh-hH--------H
Confidence 567889999999999974 99999999996 58899999999999999999999985 4555 32 1
Q ss_pred hhhheeecc-cCCcCCChhh--h--cCchhHH--HhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCC
Q 000265 1063 KRSAIKQVA-SGRFGVSSYY--L--TNADELQ--IKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIY 1135 (1760)
Q Consensus 1063 ~~s~IkQva-sgrFGVt~~~--L--~~a~~iq--IKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiy 1135 (1760)
....+++.+ +++|.+|... + .+.+.++ +.+. +| -|..-|.++++++++|.++.|+
T Consensus 110 ~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~-~a----------------dal~l~l~~~qe~~~p~g~~~f- 171 (352)
T PRK05437 110 SFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMI-EA----------------DALQIHLNPLQELVQPEGDRDF- 171 (352)
T ss_pred HHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhc-CC----------------CcEEEeCccchhhcCCCCcccH-
Confidence 235677777 4444433211 0 0111111 1111 01 0122356788899999988774
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccc-----------cccccCCC
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWT-----------GIKNAGLP 1204 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~-----------si~~~GlP 1204 (1760)
+.+.+.|.++++.. +.||+||++...-....|..+.++|+|+|+|+|+ |||++++.. ...+||+|
T Consensus 172 --~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~-GGt~~~~ie~~R~~~~~~~~~~~~~g~p 247 (352)
T PRK05437 172 --RGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVAGA-GGTSWAAIENYRARDDRLASYFADWGIP 247 (352)
T ss_pred --HHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCC-CCCCccchhhhhhhccccccccccccCC
Confidence 45677888888876 8999999974322245677899999999999998 788776432 24578999
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhh
Q 000265 1205 WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL 1284 (1760)
Q Consensus 1205 ~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~L 1284 (1760)
+..+|.++.+.+ .++|||++|||+++.||+|++++||++|++||++|.++
T Consensus 248 t~~~l~~i~~~~------~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~------------------------ 297 (352)
T PRK05437 248 TAQSLLEARSLL------PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAA------------------------ 297 (352)
T ss_pred HHHHHHHHHHhc------CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHH------------------------
Confidence 999999998863 36999999999999999999999999999999999875
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeec
Q 000265 1285 REKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEV 1330 (1760)
Q Consensus 1285 r~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~ 1330 (1760)
..+++++|.++++.+.+||+.+|+.+|+++++||.+ .+++..
T Consensus 298 ---~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~-~~~~~~ 339 (352)
T PRK05437 298 ---LEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRK-VPLVLS 339 (352)
T ss_pred ---HhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCC-CCEEec
Confidence 235689999999999999999999999999999854 554443
No 18
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.95 E-value=5e-28 Score=286.49 Aligned_cols=312 Identities=19% Similarity=0.190 Sum_probs=226.8
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCccc
Q 000265 951 AIAKLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGS 1020 (1760)
Q Consensus 951 ~i~~lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gs 1020 (1760)
.+..|.+++|.. +...|.||...++++. |...++.+. |+ |+...+++++|+++++++ ||+++||+++.
T Consensus 7 ~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~-l~-prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~ 84 (351)
T cd04737 7 NLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQ-IV-PRVLQGVESPDTSTELLGIKLKTPIIMAPIAAHG 84 (351)
T ss_pred cHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcC-ee-chhccCCCCCCCceEeCCccccchhhhHHHHHHH
Confidence 367788888766 8999999999887764 566677766 77 889999999999999997 99999999998
Q ss_pred Cc-HHHHHHHHHHHHHcCCcee-ccCCCCCccccCcCCCCCCchhhhheeeccc-CCcCCChhhhcCchhH---HHhhhc
Q 000265 1021 IS-LEAHTTLATAMNKIGGKSN-TGEGGEQPSRMEPLSDGSMNPKRSAIKQVAS-GRFGVSSYYLTNADEL---QIKMAQ 1094 (1760)
Q Consensus 1021 ls-~ea~~aLA~Aa~~~G~~s~-sGeGge~~e~~~~~~~g~~~~~~s~IkQvas-grFGVt~~~L~~a~~i---qIKiaQ 1094 (1760)
+. ++++.++|+||.++|+..+ |+.++.+.|++.....+ ...+.|++- ...+++...+..+++. .|.+.+
T Consensus 85 l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~-----~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTv 159 (351)
T cd04737 85 LAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNG-----GPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTA 159 (351)
T ss_pred hcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCC-----CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 74 6999999999999999755 78888899988643211 135677743 4456666666665543 122222
Q ss_pred cCCCCCCCCCCCccchHHHHHHhCC--------------C--CcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 000265 1095 GAKPGEGGELPGHKVIGDIAVTRNS--------------T--AGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISV 1158 (1760)
Q Consensus 1095 GAKpGeGG~Lpg~KV~~~IA~~R~~--------------~--pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~V 1158 (1760)
.+ |-.| +...++...... . ++..-..+.-++++ +|++ |.+||+.+ +.||+|
T Consensus 160 D~-p~~g------~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----l~~lr~~~-~~Pviv 226 (351)
T cd04737 160 DA-TVGG------NREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKL-SPAD----IEFIAKIS-GLPVIV 226 (351)
T ss_pred CC-CCCC------cchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCC-CHHH----HHHHHHHh-CCcEEE
Confidence 22 1000 001111100000 0 00000111111222 5555 67788876 799999
Q ss_pred EEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHH
Q 000265 1159 KLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRD 1238 (1760)
Q Consensus 1159 Klv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~D 1238 (1760)
|.+ .....|..+.++|+|+|+||||+|.. .+.+.+++..|+++.+.+ +++++||+||||++|.|
T Consensus 227 Kgv---~~~~dA~~a~~~G~d~I~vsnhGGr~--------ld~~~~~~~~l~~i~~a~-----~~~i~vi~dGGIr~g~D 290 (351)
T cd04737 227 KGI---QSPEDADVAINAGADGIWVSNHGGRQ--------LDGGPASFDSLPEIAEAV-----NHRVPIIFDSGVRRGEH 290 (351)
T ss_pred ecC---CCHHHHHHHHHcCCCEEEEeCCCCcc--------CCCCchHHHHHHHHHHHh-----CCCCeEEEECCCCCHHH
Confidence 965 33467888999999999999996543 234556678888887773 45799999999999999
Q ss_pred HHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCh
Q 000265 1239 VAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTI 1318 (1760)
Q Consensus 1239 VaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si 1318 (1760)
|+||++|||++|++||++|++++. +++++|.++++.+.+||+..|+++|++++
T Consensus 291 i~kaLalGA~~V~iGr~~l~~la~---------------------------~G~~gv~~~l~~l~~El~~~m~l~G~~~i 343 (351)
T cd04737 291 VFKALASGADAVAVGRPVLYGLAL---------------------------GGAQGVASVLEHLNKELKIVMQLAGTRTI 343 (351)
T ss_pred HHHHHHcCCCEEEECHHHHHHHhh---------------------------chHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 999999999999999999998753 36899999999999999999999999999
Q ss_pred hhhcCCCc
Q 000265 1319 TEMIGRSD 1326 (1760)
Q Consensus 1319 ~ELigr~d 1326 (1760)
+|| .+.+
T Consensus 344 ~el-~~~~ 350 (351)
T cd04737 344 EDV-KRTF 350 (351)
T ss_pred HHh-CCCC
Confidence 997 5544
No 19
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.95 E-value=1.4e-27 Score=282.81 Aligned_cols=314 Identities=18% Similarity=0.210 Sum_probs=222.7
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC
Q 000265 952 IAKLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI 1021 (1760)
Q Consensus 952 i~~lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl 1021 (1760)
+.-+.+++|.. +...|.||...++++. |...++.+. |+ ||...+++++|++++|++ ||+++||++..+
T Consensus 6 i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~-l~-PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~~l 83 (367)
T PLN02493 6 VTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARIL-FR-PRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKM 83 (367)
T ss_pred HHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCC-ee-cccccCCCCCCCceEECCccccccceechHHHHhh
Confidence 56677777665 8999999999888764 556677765 77 889999999999999997 999999999886
Q ss_pred -cHHHHHHHHHHHHHcCCc-eeccCCCCCccccCcCCCCCCchhhhheeecccC-CcCCChhhhcCchhH-----HHhhh
Q 000265 1022 -SLEAHTTLATAMNKIGGK-SNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASG-RFGVSSYYLTNADEL-----QIKMA 1093 (1760)
Q Consensus 1022 -s~ea~~aLA~Aa~~~G~~-s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasg-rFGVt~~~L~~a~~i-----qIKia 1093 (1760)
.++++.++|+||.++|+. ..|.-++.+.|++....++ ..++|++-. .-+++...+..|+.. -+.+.
T Consensus 84 ~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~------~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD 157 (367)
T PLN02493 84 AHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPG------IRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVD 157 (367)
T ss_pred cCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCC------CcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 689999999999999995 5555567788887543222 356776532 123344444333221 11111
Q ss_pred ccCCCCCC--------C-CCCCccch-HHHHHHhCCCC----cccccCC-CCCCC-CCCHHHHHHHHHHHHHhCCCCceE
Q 000265 1094 QGAKPGEG--------G-ELPGHKVI-GDIAVTRNSTA----GVGLISP-PPHHD-IYSIEDLAQLIYDLKNANPGARIS 1157 (1760)
Q Consensus 1094 QGAKpGeG--------G-~Lpg~KV~-~~IA~~R~~~p----G~~lisP-~~hhD-iySiedLaqlI~~Lk~~~p~~pV~ 1157 (1760)
-|..| + .+|. +.+ ..+...+...+ +..+... ....| -.+|+| |.|||+.+ +.||+
T Consensus 158 ---~p~~G~R~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~d----i~wlr~~~-~~Pii 228 (367)
T PLN02493 158 ---TPRLGRRESDIKNRFTLPP-NLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKD----VQWLQTIT-KLPIL 228 (367)
T ss_pred ---CCCCCcchhhhcccCCCCc-ccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHH----HHHHHhcc-CCCEE
Confidence 01100 0 0111 000 00000000000 0000000 00011 125655 88899887 89999
Q ss_pred EEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHH
Q 000265 1158 VKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGR 1237 (1760)
Q Consensus 1158 VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~ 1237 (1760)
||.+ .....|..+.++|+|+|+||||+|+. .++++|++.+|+++.+++ .++++|++|||||+|.
T Consensus 229 vKgV---~~~~dA~~a~~~Gvd~I~VsnhGGrq--------ld~~~~t~~~L~ei~~av-----~~~~~vi~dGGIr~G~ 292 (367)
T PLN02493 229 VKGV---LTGEDARIAIQAGAAGIIVSNHGARQ--------LDYVPATISALEEVVKAT-----QGRIPVFLDGGVRRGT 292 (367)
T ss_pred eecC---CCHHHHHHHHHcCCCEEEECCCCCCC--------CCCchhHHHHHHHHHHHh-----CCCCeEEEeCCcCcHH
Confidence 9986 34678889999999999999997653 356778999999998874 4579999999999999
Q ss_pred HHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000265 1238 DVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRT 1317 (1760)
Q Consensus 1238 DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~s 1317 (1760)
||+||++|||++|++|+++|+++.+ ++.++|.++++.+.+|++..|+++|+++
T Consensus 293 Dv~KALALGA~aV~iGr~~l~~l~~---------------------------~G~~gv~~~l~~l~~el~~~m~l~G~~~ 345 (367)
T PLN02493 293 DVFKALALGASGIFIGRPVVFSLAA---------------------------EGEAGVRKVLQMLRDEFELTMALSGCRS 345 (367)
T ss_pred HHHHHHHcCCCEEEEcHHHHHHHHh---------------------------cCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999998754 3689999999999999999999999999
Q ss_pred hhhhcCCCc
Q 000265 1318 ITEMIGRSD 1326 (1760)
Q Consensus 1318 i~ELigr~d 1326 (1760)
+.|| .+..
T Consensus 346 i~~l-~~~~ 353 (367)
T PLN02493 346 LKEI-SRNH 353 (367)
T ss_pred HHHh-Chhh
Confidence 9997 4443
No 20
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.95 E-value=2.1e-27 Score=280.16 Aligned_cols=265 Identities=23% Similarity=0.284 Sum_probs=201.4
Q ss_pred CCCCCCCCCCCCcccccc-----ceEecCCCccc-CcHHHHHHHHHHHHHcCCceeccCCC---CCccccCcCCCCCCch
Q 000265 992 ADVKIPLEEVEPASEIVK-----RFCTGAMSYGS-ISLEAHTTLATAMNKIGGKSNTGEGG---EQPSRMEPLSDGSMNP 1062 (1760)
Q Consensus 992 ~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gs-ls~ea~~aLA~Aa~~~G~~s~sGeGg---e~~e~~~~~~~g~~~~ 1062 (1760)
..+.+++++||++++|++ ||+++||++|+ .+.+++..||++|+++|+.+++|+++ .+||...
T Consensus 31 ~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e~~~--------- 101 (326)
T cd02811 31 ALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPELAE--------- 101 (326)
T ss_pred cCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccChhhhh---------
Confidence 456788999999999876 99999999986 57889999999999999999999874 3555331
Q ss_pred hhhheeeccc-CCcCCChhhhc----CchhHH--HhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCC
Q 000265 1063 KRSAIKQVAS-GRFGVSSYYLT----NADELQ--IKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIY 1135 (1760)
Q Consensus 1063 ~~s~IkQvas-grFGVt~~~L~----~a~~iq--IKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiy 1135 (1760)
....+++.++ .+|.++..... +.+.++ +++. +|. |..-|.++.+++++|..+.|+
T Consensus 102 ~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~-~ad----------------alel~l~~~q~~~~~~~~~df- 163 (326)
T cd02811 102 SFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMI-EAD----------------ALAIHLNPLQEAVQPEGDRDF- 163 (326)
T ss_pred HHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhc-CCC----------------cEEEeCcchHhhcCCCCCcCH-
Confidence 2345677766 44433321100 111111 1111 110 112256778888899887774
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCcc-------------ccccccC
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRW-------------TGIKNAG 1202 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~-------------~si~~~G 1202 (1760)
+.+.+.|.++++.. +.||+||++...-....|..+.++|+|+|+|+|+ |||.+... ....+||
T Consensus 164 --~~~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~-GGt~~~~ie~~r~~~~~~~~~~~~~~~g 239 (326)
T cd02811 164 --RGWLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVAGA-GGTSWARVENYRAKDSDQRLAEYFADWG 239 (326)
T ss_pred --HHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCC-CCCccccccccccccccccccccccccc
Confidence 45667788888775 8899999965422346778899999999999998 77665531 3346789
Q ss_pred CCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccCh
Q 000265 1203 LPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDP 1282 (1760)
Q Consensus 1203 lP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp 1282 (1760)
+|+...|+++.+.+ .++|||++|||+++.||+||++|||++|++||++|.++
T Consensus 240 ~~t~~~l~~~~~~~------~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~---------------------- 291 (326)
T cd02811 240 IPTAASLLEVRSAL------PDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAA---------------------- 291 (326)
T ss_pred ccHHHHHHHHHHHc------CCCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHH----------------------
Confidence 99999999987763 16999999999999999999999999999999999875
Q ss_pred hhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q 000265 1283 VLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEM 1321 (1760)
Q Consensus 1283 ~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~EL 1321 (1760)
+. ++++|.++++.+.+||+.+|.++|++|++||
T Consensus 292 -----~~-g~~~~~~~i~~~~~el~~~m~~~G~~si~el 324 (326)
T cd02811 292 -----LE-GEEAVIETIEQIIEELRTAMFLTGAKNLAEL 324 (326)
T ss_pred -----hc-CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 23 6899999999999999999999999999997
No 21
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.95 E-value=6.3e-28 Score=285.09 Aligned_cols=183 Identities=23% Similarity=0.286 Sum_probs=148.4
Q ss_pred CCcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee--------eecccc
Q 000265 283 AKDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI--------LGHNGE 353 (1760)
Q Consensus 283 ~~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~--------laHNGE 353 (1760)
++.++|++++++++ ++||+|++.|||+-- |+.+ ++.+.++|||+||||.+..+|.+||||.. +||||+
T Consensus 34 QeaAGI~~~dg~~~~~~K~~GLV~dvF~~~--~~~~-~l~G~~~IGHvRYsTaG~s~~~naQP~~~~~~~g~ialaHNGn 110 (470)
T COG0034 34 QEAAGIAVADGKRFHTHKGMGLVSDVFNER--DLLR-KLQGNVGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGN 110 (470)
T ss_pred cccccEEEEcCceEEEEecCccchhhcCch--hhhh-hccCcceeeEeeecCCCCcccccccceEEecCCCcEEEEecCc
Confidence 35689999999987 999999999998753 4433 68889999999999999999999999964 799999
Q ss_pred ccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcC--CCHHHHHHHcCccccccCCC
Q 000265 354 INTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAG--RSLPEAVMMMIPEAWQNDKN 431 (1760)
Q Consensus 354 Int~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g--~sl~eAi~~~iPeaw~~~~~ 431 (1760)
|.|....|+ +|++.+.+ ++++||||+|.|+|. ++. .++.+|+...
T Consensus 111 l~N~~~Lr~-------------------~l~~~g~~-f~t~sDsEvll~l~a---~~~~~~~~~~a~~~~---------- 157 (470)
T COG0034 111 LVNAEELRR-------------------ELEEEGAI-FNTTSDSEVLLHLLA---RELDEDDIFEAVKEV---------- 157 (470)
T ss_pred ccCHHHHHH-------------------HHHhcCce-ecCCccHHHHHHHHH---hhcccccHHHHHHHH----------
Confidence 997655554 45556666 689999999988864 432 4777777754
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcE-EEecCCceEEEccCCCCCCCceEEEEe-CCEEEEEeccccccCCCCcEEEccccC
Q 000265 432 MDPQRKALYEYFSALMEPWDGPAL-ISFTDGRYLGATLDRNGLRPGRFYITH-SGRVIMASEVGVVDIPPEDVLRKGRLN 509 (1760)
Q Consensus 432 m~~e~rafYey~s~lmepwdGPa~-iv~tdG~~igA~lDrnGLRPlr~~~t~-d~~~i~ASE~galdi~~~~vv~kgrl~ 509 (1760)
|+...|+|+ ++++.+.+++ +|||||+||| +++.. |+.|++|||+||||+.+.+++| +|+
T Consensus 158 ---------------~~~v~G~ys~v~~~~~~lia-~RDP~GiRPL-~iG~~~dG~yvvaSEt~Ald~iGa~~vR--dv~ 218 (470)
T COG0034 158 ---------------LRRVKGAYALVALIKDGLIA-VRDPNGIRPL-VLGKLGDGFYVVASETCALDILGAEFVR--DVE 218 (470)
T ss_pred ---------------HhhcCCcEEEEEEECCeEEE-EECCCCCccc-eeeecCCCCEEEEechhhhhcccceEEE--ecC
Confidence 455799985 5567776555 8999999999 67775 5569999999999999999996 999
Q ss_pred CCcEEEEEcCC
Q 000265 510 PGMMLLVDFEK 520 (1760)
Q Consensus 510 PGeml~vd~~~ 520 (1760)
|||+|++..++
T Consensus 219 pGE~v~i~~~~ 229 (470)
T COG0034 219 PGEAVIITIDG 229 (470)
T ss_pred CceEEEEEecC
Confidence 99999965544
No 22
>TIGR03122 one_C_dehyd_C formylmethanofuran dehydrogenase subunit C. Members of this largely archaeal protein family are subunit C of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdC) from molybdenum-containing (FmdC) forms of this enzyme.
Probab=99.95 E-value=4.4e-28 Score=274.69 Aligned_cols=156 Identities=24% Similarity=0.383 Sum_probs=136.1
Q ss_pred cEEEEecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcCCCCceEEE
Q 000265 1393 PVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVA 1472 (1760)
Q Consensus 1393 ~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV 1472 (1760)
.++|+.+..+.+|+ |.+ |+.++ |.|+|++||++|++| +|++|+|+|||+||+|++|+||+|+|
T Consensus 61 ~l~i~g~~~r~~~I-G~~-------------m~~g~--I~v~G~~G~~~G~~M-~gG~I~V~G~ag~~~G~~m~GG~I~V 123 (260)
T TIGR03122 61 RLVIDGDTSRVKRI-GER-------------MSAGE--IVVEGDVGMHVGAEM-KGGKIVVNGNADSWLGCEMKGGEIEV 123 (260)
T ss_pred EEEEECCCccCCee-eCC-------------CCCCE--EEEEccchhHHhccC-CCCEEEEEecCchhhhCcccCCEEEE
Confidence 46666677777874 876 55665 566899999999999 67799999999999999999999999
Q ss_pred eCCCCCCCCCCccccchhhhhccCcccEEEEecccccccccccCCcEEEEcC-CCccccccccCcEEEEeCCCCCcccCC
Q 000265 1473 YPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAG 1551 (1760)
Q Consensus 1473 ~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~gag 1551 (1760)
+||++. ...+.+.|+ ..||+||+|+|+||||+|+|.+|+||+|+|+| +|||+|+||.||+|+|+|++|.++|++
T Consensus 124 ~GnAg~---~~G~~~~G~--~~gM~GG~I~V~GnaG~~~G~~M~gG~iiV~G~aG~~~G~~M~gG~ivV~G~~g~~~g~~ 198 (260)
T TIGR03122 124 KGNAGD---YVGSAYRGE--WRGMSGGKIIVEGNAGDYLGERMRGGEILIEGNAGIFAGIHMNGGTIIIDGDVGRRPGGE 198 (260)
T ss_pred ECCCcc---cccceeecc--cccccCCEEEEEechhHhhhhhccCcEEEEeeecccceeccccCCEEEEecccCcccccC
Confidence 999763 334444565 46999999999999999999999999999999 799999999999999999999999999
Q ss_pred CcceEEEEEcCCchhhccc
Q 000265 1552 MSGGIAYVLDVDGKFRSRC 1570 (1760)
Q Consensus 1552 M~gG~iyv~~~~~~~~~~~ 1570 (1760)
|.+|+|||+++...+...+
T Consensus 199 M~~GtI~v~g~~~~~~p~F 217 (260)
T TIGR03122 199 MKRGTIVVGGKPDELLPSF 217 (260)
T ss_pred CcceEEEEeCCccccCCCc
Confidence 9999999999988765544
No 23
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.95 E-value=6.6e-27 Score=278.61 Aligned_cols=317 Identities=16% Similarity=0.154 Sum_probs=222.0
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC
Q 000265 952 IAKLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI 1021 (1760)
Q Consensus 952 i~~lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl 1021 (1760)
+.-+++++|.. +...|.||...++++. |...+..+. |+ ||...+++++|++|+|++ ||+++||++..+
T Consensus 6 i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~-l~-PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~~l 83 (381)
T PRK11197 6 ASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIA-LR-QRVLKDMSDLSLETTLFGEKLSMPVALAPVGLTGM 83 (381)
T ss_pred HHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcc-ee-cccccCCCCCCCceEECCcccccchhhChHHHhhc
Confidence 56677777766 8999999999887764 556677766 77 889999999999999997 999999999886
Q ss_pred -cHHHHHHHHHHHHHcCCc-eeccCCCCCccccCcCCCCCCchhhhheeecccC-CcCCChhhhcCchhH-----HHhhh
Q 000265 1022 -SLEAHTTLATAMNKIGGK-SNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASG-RFGVSSYYLTNADEL-----QIKMA 1093 (1760)
Q Consensus 1022 -s~ea~~aLA~Aa~~~G~~-s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasg-rFGVt~~~L~~a~~i-----qIKia 1093 (1760)
.++++.++|+||.++|+. +.|+....+.|++....++ ..++|++-. ...++...+..|++. -+.+.
T Consensus 84 ~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~------~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD 157 (381)
T PRK11197 84 YARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKR------PMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVD 157 (381)
T ss_pred cCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCC------CeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 588999999999999995 5567777888888643222 356776422 223333344333221 11111
Q ss_pred ccCCCCCC------C-CCCCccchH---------HHHH--HhCCCCc-----ccccCCCCCCCC-----------CCHHH
Q 000265 1094 QGAKPGEG------G-ELPGHKVIG---------DIAV--TRNSTAG-----VGLISPPPHHDI-----------YSIED 1139 (1760)
Q Consensus 1094 QGAKpGeG------G-~Lpg~KV~~---------~IA~--~R~~~pG-----~~lisP~~hhDi-----------ySied 1139 (1760)
-..+|.. | .+|...... |... .++..+. +.+.++....++ .+|+|
T Consensus 158 -~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~d 236 (381)
T PRK11197 158 -MPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKD 236 (381)
T ss_pred -CCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHH
Confidence 0001100 0 012100000 0000 1111111 111122222211 24544
Q ss_pred HHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhC
Q 000265 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAN 1219 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~ 1219 (1760)
|.+|++.+ +.||+||.|.. ...|..+.++|||+|+||||+|.. .+..+|+...|+++.+.+
T Consensus 237 ----i~~lr~~~-~~pvivKgV~s---~~dA~~a~~~Gvd~I~Vs~hGGr~--------~d~~~~t~~~L~~i~~a~--- 297 (381)
T PRK11197 237 ----LEWIRDFW-DGPMVIKGILD---PEDARDAVRFGADGIVVSNHGGRQ--------LDGVLSSARALPAIADAV--- 297 (381)
T ss_pred ----HHHHHHhC-CCCEEEEecCC---HHHHHHHHhCCCCEEEECCCCCCC--------CCCcccHHHHHHHHHHHh---
Confidence 78888887 88999998743 467888999999999999995542 233467889999998763
Q ss_pred CCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHH
Q 000265 1220 DLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFF 1299 (1760)
Q Consensus 1220 glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~ 1299 (1760)
..+++|++||||++|.||+||++|||++|++|+++|+++++ ++.++|.+++
T Consensus 298 --~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~---------------------------~G~~gv~~~l 348 (381)
T PRK11197 298 --KGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAA---------------------------AGQAGVANLL 348 (381)
T ss_pred --cCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHh---------------------------ccHHHHHHHH
Confidence 34799999999999999999999999999999999999864 3699999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhhcCCCc
Q 000265 1300 FMLAEELREIMSQLGFRTITEMIGRSD 1326 (1760)
Q Consensus 1300 ~~l~~ELr~~Ma~lG~~si~ELigr~d 1326 (1760)
+.+.+||+..|+++|+++++|| .+..
T Consensus 349 ~~l~~El~~~m~l~G~~~i~el-~~~~ 374 (381)
T PRK11197 349 DLIEKEMRVAMTLTGAKSISEI-TRDS 374 (381)
T ss_pred HHHHHHHHHHHHHHCCCCHHHh-CHhh
Confidence 9999999999999999999997 5443
No 24
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.95 E-value=5.6e-27 Score=279.67 Aligned_cols=313 Identities=17% Similarity=0.123 Sum_probs=220.7
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCccc
Q 000265 951 AIAKLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGS 1020 (1760)
Q Consensus 951 ~i~~lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gs 1020 (1760)
.+.-+.+++|.. +...|.||...++++. |...++.+. |+ ||...+++++|++++|++ ||+++||++..
T Consensus 20 ~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~-l~-PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 20 DPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWR-IV-PRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred CHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcC-cc-ccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 466777777765 8889999998887763 666777766 77 889999999999999997 99999999987
Q ss_pred C-cHHHHHHHHHHHHHcCCcee-ccCCCCCccccCcC-CCCCCchhhhheeecccC-CcCCChhhhcCchhHH-----Hh
Q 000265 1021 I-SLEAHTTLATAMNKIGGKSN-TGEGGEQPSRMEPL-SDGSMNPKRSAIKQVASG-RFGVSSYYLTNADELQ-----IK 1091 (1760)
Q Consensus 1021 l-s~ea~~aLA~Aa~~~G~~s~-sGeGge~~e~~~~~-~~g~~~~~~s~IkQvasg-rFGVt~~~L~~a~~iq-----IK 1091 (1760)
+ .++++.++|+||.++|+... |..++.+.|++... +++ ..++|++-. ...++...+..|++.- +.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~------~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlT 171 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDA------PRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVT 171 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCC------CcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 6 68999999999999999644 44667888887643 111 357786442 2344444444433221 11
Q ss_pred hhccCCCCC------CCCCCCcc-chH--------HHHHHhCCCCccc------------ccCCCCCCCCCCHHHHHHHH
Q 000265 1092 MAQGAKPGE------GGELPGHK-VIG--------DIAVTRNSTAGVG------------LISPPPHHDIYSIEDLAQLI 1144 (1760)
Q Consensus 1092 iaQGAKpGe------GG~Lpg~K-V~~--------~IA~~R~~~pG~~------------lisP~~hhDiySiedLaqlI 1144 (1760)
+. -.-+|. .+.+|... ... |....+...+... ...-..++. .+|++ |
T Consensus 172 VD-~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~tW~~----i 245 (383)
T cd03332 172 LD-TWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPS-LTWED----L 245 (383)
T ss_pred CC-CCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCC-CCHHH----H
Confidence 10 000000 01111000 000 0000000000000 000000111 24554 7
Q ss_pred HHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCc
Q 000265 1145 YDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGR 1224 (1760)
Q Consensus 1145 ~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~r 1224 (1760)
.+|++.+ +.||+||.+. ....|..+.++|+|+|+||||+|+. .+.++|++.+|+++.+++ .++
T Consensus 246 ~~lr~~~-~~pvivKgV~---~~~dA~~a~~~G~d~I~vsnhGGr~--------~d~~~~t~~~L~ei~~~~-----~~~ 308 (383)
T cd03332 246 AFLREWT-DLPIVLKGIL---HPDDARRAVEAGVDGVVVSNHGGRQ--------VDGSIAALDALPEIVEAV-----GDR 308 (383)
T ss_pred HHHHHhc-CCCEEEecCC---CHHHHHHHHHCCCCEEEEcCCCCcC--------CCCCcCHHHHHHHHHHHh-----cCC
Confidence 7788876 7999999763 3467888999999999999997754 356899999999999884 347
Q ss_pred eEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHH
Q 000265 1225 TILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAE 1304 (1760)
Q Consensus 1225 V~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ 1304 (1760)
++|++||||++|.||+||++|||++|++|+++|++++. +++++|.++++.+.+
T Consensus 309 ~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~---------------------------~G~~gv~~~l~~l~~ 361 (383)
T cd03332 309 LTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLAL---------------------------GGEDGVEHVLRNLLA 361 (383)
T ss_pred CeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHh---------------------------ccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998753 368999999999999
Q ss_pred HHHHHHHhcCCCChhhh
Q 000265 1305 ELREIMSQLGFRTITEM 1321 (1760)
Q Consensus 1305 ELr~~Ma~lG~~si~EL 1321 (1760)
||+..|+++|+++++||
T Consensus 362 El~~~m~l~G~~~i~~l 378 (383)
T cd03332 362 ELDLTMGLAGIRSIAEL 378 (383)
T ss_pred HHHHHHHHHCCCCHHHh
Confidence 99999999999999997
No 25
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.94 E-value=2.1e-27 Score=282.53 Aligned_cols=294 Identities=20% Similarity=0.217 Sum_probs=196.6
Q ss_pred CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC-cHHHHHHHHHH
Q 000265 963 SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI-SLEAHTTLATA 1032 (1760)
Q Consensus 963 ~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl-s~ea~~aLA~A 1032 (1760)
+...|.+|...+.++. |...|..+. |+ ++...+++++|++++|++ ||+++||+++.+ .++++.++|+|
T Consensus 6 p~~~~~yi~gga~~e~t~~~N~~af~~i~-l~-prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAra 83 (356)
T PF01070_consen 6 PPRVFDYIDGGAGDEVTFRRNREAFDRIR-LR-PRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERALARA 83 (356)
T ss_dssp -HHHHHHHHHHSTTTHHHHHHHHGGGGEE-E----SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcHHHHHHHHHHHHhc-cc-ccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHHHHH
Confidence 6678999988887663 555677765 76 778899999999999997 999999998876 58899999999
Q ss_pred HHHcCCceeccCCC-CCccccCcCCCCCCchhhhheeecccCC-cCCChhhhcCchhH-----HHhh-------------
Q 000265 1033 MNKIGGKSNTGEGG-EQPSRMEPLSDGSMNPKRSAIKQVASGR-FGVSSYYLTNADEL-----QIKM------------- 1092 (1760)
Q Consensus 1033 a~~~G~~s~sGeGg-e~~e~~~~~~~g~~~~~~s~IkQvasgr-FGVt~~~L~~a~~i-----qIKi------------- 1092 (1760)
|.++|+...+|.++ .+.|++..... ...+.|++..+ -..+.+.+..+++. .|.+
T Consensus 84 A~~~Gi~~~lss~s~~~~e~ia~~~~------~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r 157 (356)
T PF01070_consen 84 AAKAGIPMMLSSQSSASLEEIAAASG------GPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLR 157 (356)
T ss_dssp HHHHTSEEEEETTCSSCHHHHHHHCT------SEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHH
T ss_pred HhccCcceeccCCccCCHHHHHhhcc------CCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccc
Confidence 99999988877764 45555432111 13466664331 11122222222211 1111
Q ss_pred --------------hccC-CCCCCCCCCCccchHHHHHHhCCCCcc------cccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 000265 1093 --------------AQGA-KPGEGGELPGHKVIGDIAVTRNSTAGV------GLISPPPHHDIYSIEDLAQLIYDLKNAN 1151 (1760)
Q Consensus 1093 --------------aQGA-KpGeGG~Lpg~KV~~~IA~~R~~~pG~------~lisP~~hhDiySiedLaqlI~~Lk~~~ 1151 (1760)
.+++ +|..+. ..+........+. .......+++ .+|++ |.++++.+
T Consensus 158 ~g~~~p~~~~~~~~~~~~~~p~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~----i~~~~~~~ 224 (356)
T PF01070_consen 158 NGFSVPPKLSPRNLLDGASHPRSGM--------PRLENNEAPPPGDNGAAAARFVGSQFDPS-LTWDD----IEWIRKQW 224 (356)
T ss_dssp HTCCCSTTHCTTCGTTTTTTT-TTT--------GG-----CSSSSTSTCHHHHHHHCHB-TT--SHHH----HHHHHHHC
T ss_pred cccCCCcccccccccccccCccccc--------ccccccccccCCCcchhHHHHHHHhcCCC-CCHHH----HHHHhccc
Confidence 0111 111000 0000000000000 0111111223 23443 78888886
Q ss_pred CCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcC
Q 000265 1152 PGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDG 1231 (1760)
Q Consensus 1152 p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadG 1231 (1760)
+.||+||.|.. ...|..+.++|+|+|+||||+| |. .+||+|+..+|+++++++ .++++||+||
T Consensus 225 -~~pvivKgv~~---~~da~~~~~~G~~~i~vs~hGG-r~-------~d~~~~~~~~L~~i~~~~-----~~~~~i~~dg 287 (356)
T PF01070_consen 225 -KLPVIVKGVLS---PEDAKRAVDAGVDGIDVSNHGG-RQ-------LDWGPPTIDALPEIRAAV-----GDDIPIIADG 287 (356)
T ss_dssp -SSEEEEEEE-S---HHHHHHHHHTT-SEEEEESGTG-TS-------STTS-BHHHHHHHHHHHH-----TTSSEEEEES
T ss_pred -CCceEEEeccc---HHHHHHHHhcCCCEEEecCCCc-cc-------CccccccccccHHHHhhh-----cCCeeEEEeC
Confidence 99999999743 3677889999999999999944 42 579999999999999985 3589999999
Q ss_pred CcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 000265 1232 QLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMS 1311 (1760)
Q Consensus 1232 GIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma 1311 (1760)
|||+|.||+||++|||++|++|+++|+++... ++++|.++++.+.+||+..|+
T Consensus 288 Gir~g~Dv~kalaLGA~~v~igr~~l~~l~~~---------------------------g~~gv~~~~~~l~~el~~~m~ 340 (356)
T PF01070_consen 288 GIRRGLDVAKALALGADAVGIGRPFLYALAAG---------------------------GEEGVERVLEILKEELKRAMF 340 (356)
T ss_dssp S--SHHHHHHHHHTT-SEEEESHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCeEEEccHHHHHHHHh---------------------------hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988543 589999999999999999999
Q ss_pred hcCCCChhhh
Q 000265 1312 QLGFRTITEM 1321 (1760)
Q Consensus 1312 ~lG~~si~EL 1321 (1760)
++|+++++||
T Consensus 341 l~G~~~~~~l 350 (356)
T PF01070_consen 341 LLGARSIAEL 350 (356)
T ss_dssp HHT-SBGGGH
T ss_pred HHCCCCHHHh
Confidence 9999999998
No 26
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.94 E-value=1.4e-26 Score=284.35 Aligned_cols=188 Identities=24% Similarity=0.214 Sum_probs=155.3
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
+.++|+++++..+ ++|++|++.++++.. +| +.++++++|||+||||++.++|.++|||. .++|||||
T Consensus 63 dsaGIa~~~~~~~~~~K~~Glv~~vf~~~--~l--~~l~G~i~IGHvRysT~G~~~~~naQP~~~~~~~g~ialvhNG~I 138 (500)
T PRK07349 63 ESAGIATFEGDKVHLHKDMGLVSQVFDED--IL--EELPGDLAVGHTRYSTTGSSRKANAQPAVLETRLGPLALAHNGNL 138 (500)
T ss_pred CcceEEEEeCCEEEEEecCcchhhhcchh--hh--hcCCCCEEEEEeecccCCCCCccCCCCeEeecCCCCEEEEEEEEE
Confidence 5689999888776 999999999997643 33 67899999999999999999999999996 37999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000265 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+...++.+. +.+.+ +.+.||||++.++++.....+.++.+|+..+
T Consensus 139 ~N~~eLr~~L~-------------------~~G~~-f~s~sDtEVi~~li~~~~~~~~~~~eai~~~------------- 185 (500)
T PRK07349 139 VNTVELREELL-------------------ARGCE-LTTTTDSEMIAFAIAQAVDAGKDWLEAAISA------------- 185 (500)
T ss_pred eCHHHHHHHHH-------------------hCCCc-CCCCCHHHHHHHHHHHHHhcCCCHHHHHHHH-------------
Confidence 98887776543 33433 5899999999999986656667888888755
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEe----CCEEEEEeccccccCCCCcEEEccccCC
Q 000265 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITH----SGRVIMASEVGVVDIPPEDVLRKGRLNP 510 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~----d~~~i~ASE~galdi~~~~vv~kgrl~P 510 (1760)
++.++|.|++++.+++.+.|+|||+|+||| |++.. ++.|++|||+++++..+.+.++ +|+|
T Consensus 186 ------------~~~l~G~ya~vi~~~~~l~aaRDp~GiRPL-~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir--~v~P 250 (500)
T PRK07349 186 ------------FQRCQGAFSLVIGTPEGLMGVRDPNGIRPL-VIGTLGEGGPGRYVLASETCALDIIGAEYLR--DVEP 250 (500)
T ss_pred ------------HHHhhhhEEEEEEeCCEEEEEECCCCCCCe-EEEecccCCCCeEEEEeccchhhhcCCceEE--EeCC
Confidence 345799998888887777889999999999 78765 4589999999999988788885 8999
Q ss_pred CcEEEEEcCCCEE
Q 000265 511 GMMLLVDFEKRIV 523 (1760)
Q Consensus 511 Geml~vd~~~g~i 523 (1760)
||++.|+.++-++
T Consensus 251 Geiv~i~~~g~~~ 263 (500)
T PRK07349 251 GELVWITEGGLSS 263 (500)
T ss_pred CeEEEEECCceEE
Confidence 9999998654343
No 27
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.94 E-value=4.8e-26 Score=269.42 Aligned_cols=274 Identities=23% Similarity=0.271 Sum_probs=204.1
Q ss_pred ccCCCCCCCCCCCCcccccc-----ceEecCCCccc-CcHHHHHHHHHHHHHcCCceeccCCC---CCccccCcCCCCCC
Q 000265 990 KEADVKIPLEEVEPASEIVK-----RFCTGAMSYGS-ISLEAHTTLATAMNKIGGKSNTGEGG---EQPSRMEPLSDGSM 1060 (1760)
Q Consensus 990 ~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gs-ls~ea~~aLA~Aa~~~G~~s~sGeGg---e~~e~~~~~~~g~~ 1060 (1760)
..+.|.+++++||++++|++ ||+++||++|+ .+.+.+.+||++|+++|+.+.+|+++ ++|+..
T Consensus 30 ~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~~-------- 101 (333)
T TIGR02151 30 HNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPETA-------- 101 (333)
T ss_pred cCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhhH--------
Confidence 34678999999999999985 99999999887 57788999999999999999999875 344422
Q ss_pred chhhhheeecccC-CcCCChh--hhcC--chhHH--HhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCC
Q 000265 1061 NPKRSAIKQVASG-RFGVSSY--YLTN--ADELQ--IKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHD 1133 (1760)
Q Consensus 1061 ~~~~s~IkQvasg-rFGVt~~--~L~~--a~~iq--IKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhD 1133 (1760)
+.. ..+++.++. +|.++.. .+.. .+.++ +.+.+ | -|...|.++.+++++|.++.|
T Consensus 102 ~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~-a----------------dal~i~ln~~q~~~~p~g~~~ 163 (333)
T TIGR02151 102 DTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIE-A----------------DALAIHLNVLQELVQPEGDRN 163 (333)
T ss_pred hHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhc-C----------------CCEEEcCcccccccCCCCCcC
Confidence 112 445664433 3322211 0000 00010 11110 0 022236677888899998887
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCcc-----------ccccccC
Q 000265 1134 IYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRW-----------TGIKNAG 1202 (1760)
Q Consensus 1134 iySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~-----------~si~~~G 1202 (1760)
| +.+.+.|.++++.. +.||+||.+...-....|..+.++|+|+|+|+|+ |||.+... ....+||
T Consensus 164 f---~~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~-gGt~~~~ie~~r~~~~~~~~~~~~~g 238 (333)
T TIGR02151 164 F---KGWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGA-GGTSWAQVENYRAKGSNLASFFNDWG 238 (333)
T ss_pred H---HHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCC-CCCcccchhhhcccccccchhhhccc
Confidence 5 56778888898876 7999999874322345678899999999999997 56765532 2346789
Q ss_pred CCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccCh
Q 000265 1203 LPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDP 1282 (1760)
Q Consensus 1203 lP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp 1282 (1760)
+|+...|.++.+ +..++|||++|||+|+.||+|++++|||+|++|+++|.++
T Consensus 239 ~~t~~~l~~~~~------~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~---------------------- 290 (333)
T TIGR02151 239 IPTAASLLEVRS------DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAA---------------------- 290 (333)
T ss_pred HhHHHHHHHHHh------cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHH----------------------
Confidence 999888888865 1246999999999999999999999999999999999864
Q ss_pred hhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCcee
Q 000265 1283 VLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDML 1328 (1760)
Q Consensus 1283 ~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl 1328 (1760)
+..++++|.+++..+.+||+.+|..+|++|++|| .+.+++
T Consensus 291 -----~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~el-~~~~~~ 330 (333)
T TIGR02151 291 -----LDEGEEAVIEEIELIIEELKVAMFLTGAKTIAEL-KKVPLV 330 (333)
T ss_pred -----HhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH-ccCCeE
Confidence 2357999999999999999999999999999998 445543
No 28
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.94 E-value=2.4e-26 Score=272.23 Aligned_cols=307 Identities=18% Similarity=0.152 Sum_probs=212.0
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC-cH
Q 000265 955 LQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI-SL 1023 (1760)
Q Consensus 955 lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl-s~ 1023 (1760)
|.+++|.. +...|.||...+.++. |...+..+. |+ ++...+++++|+++++++ ||+++||++-.+ .+
T Consensus 3 ~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~-l~-pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 3 FEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIR-FR-PRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred HHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCc-ee-ccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 44555544 7888999988777653 555566655 66 778889999999999996 999999998775 58
Q ss_pred HHHHHHHHHHHHcCCceeccCC-CCCccccCcCCCCCCchhhhheeecccCC-cCCChhhhcCchhH-----HHhhhccC
Q 000265 1024 EAHTTLATAMNKIGGKSNTGEG-GEQPSRMEPLSDGSMNPKRSAIKQVASGR-FGVSSYYLTNADEL-----QIKMAQGA 1096 (1760)
Q Consensus 1024 ea~~aLA~Aa~~~G~~s~sGeG-ge~~e~~~~~~~g~~~~~~s~IkQvasgr-FGVt~~~L~~a~~i-----qIKiaQGA 1096 (1760)
+++.++|+||.++|+.+..+.. ..+.|++.....+ + ...+.|++..+ ...+.+.+..+++. -|.+.
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~--~--~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD--- 153 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPP--D--QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVD--- 153 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCC--C--CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECC---
Confidence 8999999999999998776655 4566664322110 0 13568875432 22333334333322 12221
Q ss_pred CCCCCCCCCCccchHHHHHHhC--CCCcccccCCC---------CCCC---CCCHHHHHHHHHHHHHhCCCCceEEEEcc
Q 000265 1097 KPGEGGELPGHKVIGDIAVTRN--STAGVGLISPP---------PHHD---IYSIEDLAQLIYDLKNANPGARISVKLVS 1162 (1760)
Q Consensus 1097 KpGeGG~Lpg~KV~~~IA~~R~--~~pG~~lisP~---------~hhD---iySiedLaqlI~~Lk~~~p~~pV~VKlv~ 1162 (1760)
-|..| . .+ ..+|. ..|- .+..|. .... ........+.|.+|++.+ +.||+||.+
T Consensus 154 ~p~~g-----~--r~--~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~PvivKgv- 221 (344)
T cd02922 154 APVLG-----K--RE--RDERLKAEEAV-SDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHT-KLPIVLKGV- 221 (344)
T ss_pred CCCcC-----c--ch--hhhhhcCCcCc-cccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhc-CCcEEEEcC-
Confidence 01000 0 00 00110 0000 000000 0000 000011134488888876 899999975
Q ss_pred ccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000265 1163 EAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1163 ~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
+....|..+.++|+|+|+||||+|.. ++ ...|+..+|+++++.+...+ ++++||+||||++|.||+||
T Consensus 222 --~~~~dA~~a~~~G~d~I~vsnhgG~~-------~d-~~~~~~~~L~~i~~~~~~~~--~~~~vi~~GGIr~G~Dv~ka 289 (344)
T cd02922 222 --QTVEDAVLAAEYGVDGIVLSNHGGRQ-------LD-TAPAPIEVLLEIRKHCPEVF--DKIEVYVDGGVRRGTDVLKA 289 (344)
T ss_pred --CCHHHHHHHHHcCCCEEEEECCCccc-------CC-CCCCHHHHHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHH
Confidence 45678888999999999999996442 33 45678889999999776543 47999999999999999999
Q ss_pred HHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q 000265 1243 ALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEM 1321 (1760)
Q Consensus 1243 laLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~EL 1321 (1760)
++|||++|++||++|++++|. ++++|.++++.+.+||+.+|+++|+++++||
T Consensus 290 laLGA~aV~iG~~~l~~l~~~---------------------------G~~gv~~~l~~l~~EL~~~m~l~G~~~i~~l 341 (344)
T cd02922 290 LCLGAKAVGLGRPFLYALSAY---------------------------GEEGVEKAIQILKDEIETTMRLLGVTSLDQL 341 (344)
T ss_pred HHcCCCEEEECHHHHHHHhhc---------------------------cHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 999999999999999998763 5899999999999999999999999999997
No 29
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.94 E-value=6.4e-26 Score=269.13 Aligned_cols=320 Identities=15% Similarity=0.154 Sum_probs=221.5
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCc
Q 000265 949 PLAIAKLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSY 1018 (1760)
Q Consensus 949 P~~i~~lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~ 1018 (1760)
...+.-|.+++|.. +...|.+|...++++. |...++.+. |+ ||...+++++|+++++++ ||+++||++
T Consensus 13 ~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~-l~-PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~ 90 (367)
T TIGR02708 13 FINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKL-IV-PHLLQDVENPSTEIEFLGHKLKSPFIMAPVAA 90 (367)
T ss_pred CCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcC-ee-cccccCCCCCCCceeeCCcccccccccCcHHH
Confidence 33467887777766 8999999999887764 556677765 77 889999999999999997 999999999
Q ss_pred ccC-cHHHHHHHHHHHHHcCCc-eeccCCCCCccccCcCCCCCCchhhhheeecccC-CcCCChhhhcCchhH-----HH
Q 000265 1019 GSI-SLEAHTTLATAMNKIGGK-SNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASG-RFGVSSYYLTNADEL-----QI 1090 (1760)
Q Consensus 1019 Gsl-s~ea~~aLA~Aa~~~G~~-s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasg-rFGVt~~~L~~a~~i-----qI 1090 (1760)
..+ .++++.++|+||.++|+. +.|..+..+.|++.....+ ...++|++-. .-.++...+..++.. -+
T Consensus 91 ~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~-----~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvl 165 (367)
T TIGR02708 91 HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNG-----TPHWFQFYMSKDDGINRDIMDRVKADGAKAIVL 165 (367)
T ss_pred hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCC-----CceEEEEeccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 876 589999999999999996 4445556788877533111 1357776432 223444444433221 11
Q ss_pred hhhccCCCCC-------CCCCCCccchHHHHHHhCCCCc-ccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEcc
Q 000265 1091 KMAQGAKPGE-------GGELPGHKVIGDIAVTRNSTAG-VGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVS 1162 (1760)
Q Consensus 1091 KiaQGAKpGe-------GG~Lpg~KV~~~IA~~R~~~pG-~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~ 1162 (1760)
.+. -..+|. +-.+|. +...+...+.+.... ...+.....+ -.+|++ |.+|++.+ +.||+||.+
T Consensus 166 TvD-~p~~g~R~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~----i~~l~~~~-~~PvivKGv- 236 (367)
T TIGR02708 166 TAD-ATVGGNREVDVRNGFVFPV-GMPIVQEYLPTGAGKSMDNVYKSAKQ-KLSPRD----IEEIAGYS-GLPVYVKGP- 236 (367)
T ss_pred ecC-CCCCCcchhhhhcCCCCCC-ccchhhhhcccCCccchhhhccccCC-CCCHHH----HHHHHHhc-CCCEEEeCC-
Confidence 110 000000 001110 110001111110000 0000000111 134544 77788876 799999964
Q ss_pred ccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000265 1163 EAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1163 ~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
+....|..+.++|+|+|+||||+|.. .+.+.+....|+++.++ +.++++||+||||++|.||+||
T Consensus 237 --~~~eda~~a~~~Gvd~I~VS~HGGrq--------~~~~~a~~~~L~ei~~a-----v~~~i~vi~dGGIr~g~Dv~Ka 301 (367)
T TIGR02708 237 --QCPEDADRALKAGASGIWVTNHGGRQ--------LDGGPAAFDSLQEVAEA-----VDKRVPIVFDSGVRRGQHVFKA 301 (367)
T ss_pred --CCHHHHHHHHHcCcCEEEECCcCccC--------CCCCCcHHHHHHHHHHH-----hCCCCcEEeeCCcCCHHHHHHH
Confidence 44678889999999999999997643 23455667889999886 3457999999999999999999
Q ss_pred HHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhc
Q 000265 1243 ALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMI 1322 (1760)
Q Consensus 1243 laLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELi 1322 (1760)
++|||++|++|+++|+++++ +++++|.++++.+.+||+..|+++|+++++||
T Consensus 302 LalGAd~V~igR~~l~~la~---------------------------~G~~gv~~~l~~l~~El~~~M~l~G~~~i~eL- 353 (367)
T TIGR02708 302 LASGADLVALGRPVIYGLAL---------------------------GGSQGARQVFEYLNKELKRVMQLTGTQTIEDV- 353 (367)
T ss_pred HHcCCCEEEEcHHHHHHHHh---------------------------cCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh-
Confidence 99999999999999998754 36899999999999999999999999999997
Q ss_pred CCCce
Q 000265 1323 GRSDM 1327 (1760)
Q Consensus 1323 gr~dL 1327 (1760)
.+..+
T Consensus 354 ~~~~l 358 (367)
T TIGR02708 354 KGFDL 358 (367)
T ss_pred Ccccc
Confidence 55544
No 30
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.94 E-value=2.2e-26 Score=283.21 Aligned_cols=192 Identities=22% Similarity=0.270 Sum_probs=153.4
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce---------eeecccc
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR---------ILGHNGE 353 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr---------~laHNGE 353 (1760)
+.++|++++++.+ +||++|++.+|++.. ..+.+.++++|+|+||||++.++|.++|||. .++||||
T Consensus 53 dsaGIa~~d~~~i~~~K~~Glv~~vf~d~----~l~~l~G~i~IGHvR~sT~G~~~~~naQP~~~~~~~~g~ialvHNG~ 128 (510)
T PRK07847 53 EAAGIAVSDGSQILVFKDLGLVSQVFDEQ----TLASLQGHVAIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGN 128 (510)
T ss_pred CcccEEEEeCCEEEEEecCccHHHhhchh----hhhhcCCcEEEEeccCCcCCCCcccCCCCcCcccCCCCCEEEEEEEE
Confidence 4688999887666 999999999997542 2368899999999999999999999999995 3799999
Q ss_pred ccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCC
Q 000265 354 INTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMD 433 (1760)
Q Consensus 354 Int~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~ 433 (1760)
|+|+...++.+..+.. .|+ +.-+++.||||+|.++++.....+ ++.+|+..++
T Consensus 129 I~N~~eLr~~L~~~G~-----~~~----------~~~f~s~sDSEVI~~Li~~~~~~~-~~~eai~~~~----------- 181 (510)
T PRK07847 129 LVNTAELAARARDRGL-----IRG----------RDPAGATTDTDLVTALLAHGAADS-TLEQAALELL----------- 181 (510)
T ss_pred EeCHHHHHHHHHhcCC-----ccc----------cCCCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHH-----------
Confidence 9998877765542210 011 113578999999999887543222 7888887653
Q ss_pred HHHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000265 434 PQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 434 ~e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
+.++|+|++++.|++.+.|+||++|+||| |++..++.+++|||.++++..+.+.++ +|+|||+
T Consensus 182 --------------~~l~G~yA~vi~d~~~L~aaRDp~GirPL-~~g~~~~~~~vASE~~AL~~~g~~~ir--~v~PGei 244 (510)
T PRK07847 182 --------------PTVRGAFCLVFMDEHTLYAARDPQGVRPL-VLGRLERGWVVASETAALDIVGASFVR--EIEPGEL 244 (510)
T ss_pred --------------HHhhhheEEEEEECCEEEEEECCCCCCCc-EEEEECCeEEEEechHHHhccCCcEEE--EECcCEE
Confidence 45699999998888888889999999999 788878889999999999977666775 9999999
Q ss_pred EEEEcCCCEE
Q 000265 514 LLVDFEKRIV 523 (1760)
Q Consensus 514 l~vd~~~g~i 523 (1760)
+.|+.++-++
T Consensus 245 v~I~~~gv~~ 254 (510)
T PRK07847 245 IAIDADGLRS 254 (510)
T ss_pred EEEECCceEE
Confidence 9998755343
No 31
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.94 E-value=4.5e-26 Score=279.32 Aligned_cols=186 Identities=22% Similarity=0.200 Sum_probs=148.8
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee--------eeccccc
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI--------LGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~--------laHNGEI 354 (1760)
+.++|++.+++.+ ++|++|++.++++-.. +| +.+.++++|||+||||++.++|.++|||.. ++|||||
T Consensus 40 dsaGIa~~d~~~i~~~K~~Glv~~vf~~~~-~l--~~l~G~~~IGH~RysT~G~~~~~naqP~~~~~~~g~ialvhNG~I 116 (484)
T PRK07272 40 EGAGIVSNDNGKLKGHRDLGLLSEVFKDPA-DL--DKLTGQAAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNL 116 (484)
T ss_pred ccceEEEEeCCeeEEEecCCcccchhcchh-hH--hcCCCcEEEEEeeccccCCCCcCCCCCEEeecCCCCEEEEEEEEE
Confidence 5689999888777 9999999999976422 33 568899999999999999999999999953 7999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000265 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+...++.+. +.+. .+.+.||||++.++++... ..++.+|+..+
T Consensus 117 ~N~~eLr~~L~-------------------~~G~-~f~s~sDtEVI~~Li~~~~--~~~~~eai~~~------------- 161 (484)
T PRK07272 117 TNAVSLRKELE-------------------KQGA-IFHSSSDTEILMHLIRRSH--NPTFMGKLKEA------------- 161 (484)
T ss_pred eCHHHHHHHHH-------------------hCCC-CCCCCCHHHHHHHHHHHHc--CCCHHHHHHHH-------------
Confidence 99887776553 3333 3588999999998875321 23677777654
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEe-CCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000265 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITH-SGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~-d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
++.++|.|++++.++..+.|+|||+|+||| |++.. ++.|++|||+|+|+..+.++++ +|+|||+
T Consensus 162 ------------~~~l~G~ya~~i~~~~~l~a~RDp~GirPL-~~G~~~~~~~~~ASE~~Al~~ig~~~ir--~l~PGEi 226 (484)
T PRK07272 162 ------------LNTVKGGFAYLLLTEDKLIAALDPNGFRPL-SIGKMKNGAYVVASETCAFDVVGAEWVR--DVQPGEI 226 (484)
T ss_pred ------------HHHccCceeEEEEECCEEEEEECCCCCCcE-EEEEecCCEEEEEECHHHHhccCCceEE--EcCCCeE
Confidence 345799998777666667779999999999 77765 5679999999999988877875 7999999
Q ss_pred EEEEcCCCE
Q 000265 514 LLVDFEKRI 522 (1760)
Q Consensus 514 l~vd~~~g~ 522 (1760)
+.||.++-+
T Consensus 227 v~i~~~g~~ 235 (484)
T PRK07272 227 VIIDDEGIQ 235 (484)
T ss_pred EEEECCceE
Confidence 999975434
No 32
>cd00980 FwdC/FmdC FwdC/FmdC. This domain of unknown function is found in the subunit C of formylmethanofuran dehydrogenase, an enzyme that catalyzes the first step in methane formation from CO2 in methanogenic archaea, hyperthermophiles and bacteria. There are two isoenzymes, a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The subunits C of both isoenzymes (FwdC/FmdC) are characterized by a repeated GXXGXXXG motif.
Probab=99.94 E-value=1.5e-26 Score=254.32 Aligned_cols=154 Identities=25% Similarity=0.363 Sum_probs=135.2
Q ss_pred CcEEEEecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcCCCCceEE
Q 000265 1392 LPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIV 1471 (1760)
Q Consensus 1392 ~~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~Iv 1471 (1760)
..+.|+.+..+++|+ |.. |..++ |.++|++|+++|++| +|++|+|+|||+||+|.+|+||+|+
T Consensus 19 ~~i~i~g~~~r~~~i-G~~-------------m~~g~--I~v~G~~g~~~G~~M-~gG~I~V~G~ag~~~G~~m~GG~I~ 81 (203)
T cd00980 19 TKLVIEGDVPRLKRI-GAR-------------MTAGE--IVVEGDVGMYVGAGM-KGGKLVVEGNAGSWAGCEMKGGEIT 81 (203)
T ss_pred ceEEEECCcchhchh-hcC-------------cCcCE--EEEEeCCchHhhCcC-cCCEEEEECCCCchHhccCCCcEEE
Confidence 447888889999985 765 55566 566899999999999 6779999999999999999999999
Q ss_pred EeCCCCCCCCCCccccchhhhhccCcccEEEEecccccccccccCCcEEEEcC-CCccccccccCcEEEEeCCCCCcccC
Q 000265 1472 AYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAA 1550 (1760)
Q Consensus 1472 V~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~ga 1550 (1760)
|+||++.. ......|+ .+||+||+|+|+||||+|+|.+|+||+|+|+| +|+++|++|++|+|+|+|++|.++|+
T Consensus 82 V~GnAg~~---~G~~~~G~--~~gm~GG~I~V~GnaG~~~g~~M~gG~IvV~G~aG~~~G~~M~gG~ivV~G~~g~~~g~ 156 (203)
T cd00980 82 IKGNAGDY---VGSAYRGD--WRGMSGGTITIEGNAGDRLGERMRRGEILIKGDAGIFAGIRMNGGTIIVRGDAGAHPGY 156 (203)
T ss_pred EEcccccc---ccceeecc--cccCcccEEEEEecchhhhhhhcCCcEEEEeecccccccccccCCEEEEeccCCccccC
Confidence 99997653 22333455 57999999999999999999999999999999 79999999999999999999999999
Q ss_pred CCcceEEEEEcCCchhh
Q 000265 1551 GMSGGIAYVLDVDGKFR 1567 (1760)
Q Consensus 1551 gM~gG~iyv~~~~~~~~ 1567 (1760)
+|.+|+|||++....+.
T Consensus 157 ~M~~Gtivv~g~~~~~~ 173 (203)
T cd00980 157 EMKRGTIVIGGEIEELL 173 (203)
T ss_pred cCcceEEEEeCCCcccC
Confidence 99999999999876543
No 33
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.94 E-value=4.5e-26 Score=278.99 Aligned_cols=183 Identities=22% Similarity=0.201 Sum_probs=149.7
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee--------eeccccc
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI--------LGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~--------laHNGEI 354 (1760)
+.++|++++++++ ++|++|++.++++. + ...+.++++|||+||||++.+++.++|||.. ++|||||
T Consensus 48 dsaGIa~~d~~~i~~~K~~Glv~~vf~~----~-~~~l~G~~gIGH~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I 122 (474)
T PRK06388 48 ESAGMAVFDGRKIHLKKGMGLVTDVFNP----A-TDPIKGIVGVGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEI 122 (474)
T ss_pred CcceEEEEcCCEEEEEecCcchHHHhhh----h-hhcCCCcEEEeeeeeeecCCCCccCCCCeEeecCCCCEEEEECceE
Confidence 5689999888877 99999999999653 2 2578999999999999999999999999962 7999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000265 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+..+++.+.. .+. .|.+.||||++.++++...+. .++.+|+..+
T Consensus 123 ~N~~eLr~~L~~-------------------~G~-~F~s~sDtEVi~~li~~~~~~-~~~~eai~~~------------- 168 (474)
T PRK06388 123 VNADELREEMKK-------------------EGY-IFQSDSDTEVMLAELSRNISK-YGLKEGFERS------------- 168 (474)
T ss_pred CCHHHHHHHHHH-------------------CCC-cccCCCHHHHHHHHHHHHHhc-CCHHHHHHHH-------------
Confidence 999888876642 333 358999999999998754432 4788887754
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEE
Q 000265 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml 514 (1760)
++.++|.|++++.+.+.+.|+|||+|+||| |++..++.|++|||+++|+....+.++ +|+|||++
T Consensus 169 ------------~~~l~G~ya~vi~~~~~l~a~RDp~GiRPL-~~G~~~~~~~~ASE~~Al~~~~~~~i~--~l~PGeiv 233 (474)
T PRK06388 169 ------------MERLRGAYACALMINDRLYAIRDPNGIRPL-VLGKNFDGYIIASESCAIDALSGTTIK--NVEPGEVV 233 (474)
T ss_pred ------------HHhccCceeEEEEECCEEEEEECCCCCCce-EEEecCCEEEEEEChHHHHhccCcEEE--EeCCCEEE
Confidence 456799998776555556669999999999 888888889999999999877676664 89999999
Q ss_pred EEEcCC
Q 000265 515 LVDFEK 520 (1760)
Q Consensus 515 ~vd~~~ 520 (1760)
.|+.++
T Consensus 234 ~i~~~g 239 (474)
T PRK06388 234 EVFDNG 239 (474)
T ss_pred EEECCc
Confidence 998755
No 34
>PLN02979 glycolate oxidase
Probab=99.94 E-value=1.4e-25 Score=264.08 Aligned_cols=286 Identities=17% Similarity=0.193 Sum_probs=200.4
Q ss_pred cccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC-cHHHHHHHHHHHHHcCCc-eeccCCCCCccccCcC
Q 000265 983 LRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI-SLEAHTTLATAMNKIGGK-SNTGEGGEQPSRMEPL 1055 (1760)
Q Consensus 983 ~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl-s~ea~~aLA~Aa~~~G~~-s~sGeGge~~e~~~~~ 1055 (1760)
+-+++.|+ ||...+++++|++++|++ ||+++||++..+ .++++.++|+||.++|+. +.|.-++.+.|++...
T Consensus 40 ~~~~~~lr-PRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a 118 (366)
T PLN02979 40 LGGFCDFR-PRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 118 (366)
T ss_pred hCCeeEEE-CccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhc
Confidence 66778887 889999999999999997 999999999876 689999999999999996 4445556778877533
Q ss_pred CCCCCchhhhheeecccC-CcCCChhhhcCchhHH-----HhhhccCCCCC-------CCCCCCccchH-HHHHHhCCCC
Q 000265 1056 SDGSMNPKRSAIKQVASG-RFGVSSYYLTNADELQ-----IKMAQGAKPGE-------GGELPGHKVIG-DIAVTRNSTA 1121 (1760)
Q Consensus 1056 ~~g~~~~~~s~IkQvasg-rFGVt~~~L~~a~~iq-----IKiaQGAKpGe-------GG~Lpg~KV~~-~IA~~R~~~p 1121 (1760)
.++ ..+.|++-. .-+++.+.+..|++.- +.+. ..-+|. |-.+|. +.+. .+...+..++
T Consensus 119 ~~~------~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD-~pv~G~R~rd~rn~~~~p~-~~~~~~~~~~~~~~~ 190 (366)
T PLN02979 119 GPG------IRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVD-TPRLGRRESDIKNRFTLPP-NLTLKNFEGLDLGKM 190 (366)
T ss_pred cCC------CeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEec-CCCCCCchhhhccCCCCCc-ccchhhhhhccccCC
Confidence 222 356776432 1233444444333211 1110 000110 001111 1000 0000000000
Q ss_pred c------cc-ccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCc
Q 000265 1122 G------VG-LISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASR 1194 (1760)
Q Consensus 1122 G------~~-lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~ 1194 (1760)
. .. ...-..++. .+|+| |.|||+.+ +.||+||.| .....|..+.++|+|+|+||||+|+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~-ltW~d----l~wlr~~~-~~PvivKgV---~~~~dA~~a~~~Gvd~I~VsnhGGrq---- 257 (366)
T PLN02979 191 DEANDSGLASYVAGQIDRT-LSWKD----VQWLQTIT-KLPILVKGV---LTGEDARIAIQAGAAGIIVSNHGARQ---- 257 (366)
T ss_pred CcccchhHHHHHhhcCCCC-CCHHH----HHHHHhcc-CCCEEeecC---CCHHHHHHHHhcCCCEEEECCCCcCC----
Confidence 0 00 000000111 35665 88899887 899999986 34678889999999999999997653
Q ss_pred cccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCC
Q 000265 1195 WTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCP 1274 (1760)
Q Consensus 1195 ~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP 1274 (1760)
.++++|++.+|+++.+++ .++++|++||||++|.||+||++|||++|++|+++|++++.
T Consensus 258 ----ld~~p~t~~~L~ei~~~~-----~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~------------ 316 (366)
T PLN02979 258 ----LDYVPATISALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAA------------ 316 (366)
T ss_pred ----CCCchhHHHHHHHHHHHh-----CCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHh------------
Confidence 356778999999998874 35799999999999999999999999999999999998753
Q ss_pred CcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCce
Q 000265 1275 VGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDM 1327 (1760)
Q Consensus 1275 ~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dL 1327 (1760)
+++++|.++++.+.+|++..|+.+|+++++|| .++.+
T Consensus 317 ---------------~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el-~~~~~ 353 (366)
T PLN02979 317 ---------------EGEAGVRKVLQMLRDEFELTMALSGCRSLKEI-SRNHI 353 (366)
T ss_pred ---------------cCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh-Chhhh
Confidence 36899999999999999999999999999997 54443
No 35
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.93 E-value=6.4e-26 Score=277.45 Aligned_cols=185 Identities=20% Similarity=0.202 Sum_probs=150.3
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
+.++|++.+++.+ ++|++|++.++++.. +| +.++++++|||+||||++.+++.++|||. .++|||||
T Consensus 40 dsaGia~~~~~~~~~~k~~Glv~~vf~~~--~l--~~l~G~~gIGH~RysT~G~~~~~n~QP~~~~~~~g~ialvhNG~I 115 (475)
T PRK07631 40 EGAGIVVTDGGKLSAHKGLGLVTEVFQNG--EL--DALKGKAAIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNL 115 (475)
T ss_pred ccCeEEEEcCCEEEEEEcccccchhhchh--hh--hccCCCEEEEEeeccccCCCCcCCcCCeEeEcCCCCEEEEEEEEE
Confidence 4678998887766 999999999998753 34 57899999999999999999999999994 37999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000265 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+...++.+ ++.+.. +++.||||++.++++... ..++.+|+..+
T Consensus 116 ~N~~eLr~~L-------------------~~~G~~-f~s~sDtEVi~~Li~~~~--~~~~~eai~~~------------- 160 (475)
T PRK07631 116 VNATQLKLQL-------------------ENQGSI-FQTTSDTEVLAHLIKRSG--APTLKEQIKNA------------- 160 (475)
T ss_pred ECHHHHHHHH-------------------HhCCCc-CCCCCHHHHHHHHHHHHc--CCCHHHHHHHH-------------
Confidence 9888777654 333433 588999999998876321 24777777754
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEE
Q 000265 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml 514 (1760)
++.++|.|++++.++..+.++|||+|+||| |++..++.|++|||+++|+..+.++++ +|+|||++
T Consensus 161 ------------~~~l~G~yalvi~~~~~l~aaRDp~GirPL-~~G~~~~~~~~ASE~~Al~~~g~~~ir--~v~PGeiv 225 (475)
T PRK07631 161 ------------LSMLKGAYAFLLMTETELYVALDPNGLRPL-SIGRLGDAYVVASETCAFDVIGATYER--EVEPGELL 225 (475)
T ss_pred ------------HHhCCCCceeeEEeCCEEEEEECCCCCCCE-EEEEeCCEEEEEeChHHHhhcCcceEE--EcCCCeEE
Confidence 355799998777666666678999999999 888888899999999999988887886 79999999
Q ss_pred EEEcCCCE
Q 000265 515 LVDFEKRI 522 (1760)
Q Consensus 515 ~vd~~~g~ 522 (1760)
.|+.++=+
T Consensus 226 ~i~~~g~~ 233 (475)
T PRK07631 226 IINDEGMR 233 (475)
T ss_pred EEECCcEE
Confidence 99965433
No 36
>PLN02535 glycolate oxidase
Probab=99.93 E-value=1.6e-25 Score=265.86 Aligned_cols=314 Identities=17% Similarity=0.170 Sum_probs=222.3
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC
Q 000265 952 IAKLQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI 1021 (1760)
Q Consensus 952 i~~lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl 1021 (1760)
+.-|++++|.. +...|.||.....++. |...++.+. |+ ||...+++++|+++++++ ||+++|+++..+
T Consensus 8 i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~-l~-Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l 85 (364)
T PLN02535 8 VNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRIT-FR-PRVLVDVSKIDMSTTILGYTISAPIMIAPTAMHKL 85 (364)
T ss_pred HHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCC-ee-cccccCCCCCCCceEECCccccccceechHHHhcc
Confidence 56777777765 8999999999887764 566677766 77 889999999999999997 999999999886
Q ss_pred -cHHHHHHHHHHHHHcCCc-eeccCCCCCccccCcCCCCCCchhhhheeecccCC-cCCChhhhcCchhH-----HHhhh
Q 000265 1022 -SLEAHTTLATAMNKIGGK-SNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGR-FGVSSYYLTNADEL-----QIKMA 1093 (1760)
Q Consensus 1022 -s~ea~~aLA~Aa~~~G~~-s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgr-FGVt~~~L~~a~~i-----qIKia 1093 (1760)
.++++.++|+||.++|+. ..|..+..+.|++...+++ ..++|++-.+ -+++...+..|++. -+.+.
T Consensus 86 ~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~------~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD 159 (364)
T PLN02535 86 AHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNA------VRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTAD 159 (364)
T ss_pred cCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCC------CeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeec
Confidence 588999999999999996 4445567788887643222 4678886432 34444455444322 11111
Q ss_pred ccCCCCC-------CCCCCCccchHHHHH-HhCCCCc---ccc---cCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 000265 1094 QGAKPGE-------GGELPGHKVIGDIAV-TRNSTAG---VGL---ISPPPHHDIYSIEDLAQLIYDLKNANPGARISVK 1159 (1760)
Q Consensus 1094 QGAKpGe-------GG~Lpg~KV~~~IA~-~R~~~pG---~~l---isP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VK 1159 (1760)
...+|. |-.+|.. ..+.. ..+..+. ... ..-.-++. .+|++ |.+||..+ +.||+||
T Consensus 160 -~p~~g~R~~d~r~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~tW~~----i~~lr~~~-~~PvivK 229 (364)
T PLN02535 160 -VPRLGRREADIKNKMISPQL---KNFEGLLSTEVVSDKGSGLEAFASETFDAS-LSWKD----IEWLRSIT-NLPILIK 229 (364)
T ss_pred -CCCCCCchhhhhcCCCCcch---hhHhhhhccCCCccccccHHHHHHhccCCC-CCHHH----HHHHHhcc-CCCEEEe
Confidence 000000 0011100 00000 0000000 000 00000111 24555 78888875 8999999
Q ss_pred EccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHH
Q 000265 1160 LVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDV 1239 (1760)
Q Consensus 1160 lv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DV 1239 (1760)
.+.. ...|..+.++|+|+|+|+||+|+. .++++|++.+|+++.+.+ ..+++||+||||++|.||
T Consensus 230 gV~~---~~dA~~a~~~GvD~I~vsn~GGr~--------~d~~~~t~~~L~ev~~av-----~~~ipVi~dGGIr~g~Dv 293 (364)
T PLN02535 230 GVLT---REDAIKAVEVGVAGIIVSNHGARQ--------LDYSPATISVLEEVVQAV-----GGRVPVLLDGGVRRGTDV 293 (364)
T ss_pred cCCC---HHHHHHHHhcCCCEEEEeCCCcCC--------CCCChHHHHHHHHHHHHH-----hcCCCEEeeCCCCCHHHH
Confidence 8743 356788999999999999997642 467889999999998874 346999999999999999
Q ss_pred HHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChh
Q 000265 1240 AIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTIT 1319 (1760)
Q Consensus 1240 aKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ 1319 (1760)
+||++|||++|++|+++|+++.. ++.++|.++++.+.+||+..|+.+|+++++
T Consensus 294 ~KALalGA~aV~vGr~~l~~l~~---------------------------~g~~gv~~~l~~l~~el~~~m~l~G~~~i~ 346 (364)
T PLN02535 294 FKALALGAQAVLVGRPVIYGLAA---------------------------KGEDGVRKVIEMLKDELEITMALSGCPSVK 346 (364)
T ss_pred HHHHHcCCCEEEECHHHHhhhhh---------------------------ccHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999997642 368999999999999999999999999999
Q ss_pred hhcCCCce
Q 000265 1320 EMIGRSDM 1327 (1760)
Q Consensus 1320 ELigr~dL 1327 (1760)
|| .+..+
T Consensus 347 el-~~~~l 353 (364)
T PLN02535 347 DI-TRSHV 353 (364)
T ss_pred Hh-hhhhc
Confidence 98 44443
No 37
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.93 E-value=2.3e-25 Score=263.99 Aligned_cols=306 Identities=15% Similarity=0.139 Sum_probs=215.7
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC-cH
Q 000265 955 LQEAARGN-SVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI-SL 1023 (1760)
Q Consensus 955 lq~a~r~~-~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl-s~ 1023 (1760)
+.+++|.. +...|.||...++++. |...++.+. |+ ||...+++++|+++++++ ||+++||++..+ .+
T Consensus 3 ~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~-l~-PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 3 YRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWR-FI-PRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred HHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcC-cc-ccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 34444444 8889999998887763 566677766 77 889999999999999997 999999999886 68
Q ss_pred HHHHHHHHHHHHcCCc-eeccCCCCCccccCcCCCCCCchhhhheeecccCCcCCChhhhcCchhHH-----HhhhccCC
Q 000265 1024 EAHTTLATAMNKIGGK-SNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQ-----IKMAQGAK 1097 (1760)
Q Consensus 1024 ea~~aLA~Aa~~~G~~-s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgrFGVt~~~L~~a~~iq-----IKiaQGAK 1097 (1760)
+++.++|+||.++|+. ..|..+..+.|++....++ ..++|++-...+++...+..|+..- +.+. -.-
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~------~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD-~pv 153 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADG------DLWFQLYVVHRELAELLVKRALAAGYTTLVLTTD-VAV 153 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCC------CeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecC-CCC
Confidence 9999999999999995 6677778888888643222 3678876543445544554443221 1110 000
Q ss_pred CCC------CC-CCCCccchH-----------HHHH-HhCCCCcccccCC---------------CCCCCCCCHHHHHHH
Q 000265 1098 PGE------GG-ELPGHKVIG-----------DIAV-TRNSTAGVGLISP---------------PPHHDIYSIEDLAQL 1143 (1760)
Q Consensus 1098 pGe------GG-~Lpg~KV~~-----------~IA~-~R~~~pG~~lisP---------------~~hhDiySiedLaql 1143 (1760)
+|. .| .+|. +++. |... +++..+...-+.. ..+++ .+|+ .
T Consensus 154 ~g~R~~d~r~~~~~p~-~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~w~----~ 227 (361)
T cd04736 154 NGYRERDLRNGFAIPF-RYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDAS-FNWQ----D 227 (361)
T ss_pred CCCchhhhhcCCCCCc-ccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCc-CCHH----H
Confidence 000 00 0110 0000 0000 0000000000000 01112 2344 4
Q ss_pred HHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCC
Q 000265 1144 IYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRG 1223 (1760)
Q Consensus 1144 I~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~ 1223 (1760)
|.+||+.+ +.||++|.+.. ...|..+.++|+|+|+||||+|.. .+..+|++.+|+++.+.+
T Consensus 228 i~~ir~~~-~~pviiKgV~~---~eda~~a~~~G~d~I~VSnhGGrq--------ld~~~~~~~~L~ei~~~~------- 288 (361)
T cd04736 228 LRWLRDLW-PHKLLVKGIVT---AEDAKRCIELGADGVILSNHGGRQ--------LDDAIAPIEALAEIVAAT------- 288 (361)
T ss_pred HHHHHHhC-CCCEEEecCCC---HHHHHHHHHCCcCEEEECCCCcCC--------CcCCccHHHHHHHHHHHh-------
Confidence 88899987 67999998643 467888999999999999995532 244567889999998763
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHH
Q 000265 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLA 1303 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~ 1303 (1760)
+++||+||||++|.||+||++|||++|++|+++|++++. +++++|.++++.+.
T Consensus 289 ~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~---------------------------~G~~gv~~~l~~l~ 341 (361)
T cd04736 289 YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAA---------------------------RGEAGVSEVLRLLK 341 (361)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHh---------------------------cCHHHHHHHHHHHH
Confidence 389999999999999999999999999999999998754 36899999999999
Q ss_pred HHHHHHHHhcCCCChhhh
Q 000265 1304 EELREIMSQLGFRTITEM 1321 (1760)
Q Consensus 1304 ~ELr~~Ma~lG~~si~EL 1321 (1760)
+||+..|+++|+++++||
T Consensus 342 ~el~~~m~l~G~~~i~~l 359 (361)
T cd04736 342 EEIDRTLALIGCPDIASL 359 (361)
T ss_pred HHHHHHHHHhCCCCHHHc
Confidence 999999999999999997
No 38
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.93 E-value=4.6e-25 Score=270.20 Aligned_cols=183 Identities=21% Similarity=0.201 Sum_probs=148.6
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
+.++|+++++..+ ++|++|++.++++.. +| +.++++++|+|+||||++.+++.++|||. .++|||+|
T Consensus 40 dsaGia~~d~~~~~~~k~~GlV~~vf~~~--~l--~~l~g~~~IGHvRyaT~G~~~~~naqP~~~~~~~g~~alvhNG~I 115 (471)
T PRK06781 40 EGAGIVVNNGEKIVGHKGLGLISEVFSRG--EL--EGLNGKSAIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNL 115 (471)
T ss_pred CcceEEEEeCCEEEEEecCcchhhhcchh--hH--hcCCCCEEEEEeEcccCCCCCcCCCCCeEEecCCCCEEEEEEEEE
Confidence 4688998887766 999999999998753 34 57899999999999999999999999993 47999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000265 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+...++.+. +.+. .+++.||||++.++++... +.++.+|+..+
T Consensus 116 ~N~~eLr~~L~-------------------~~G~-~f~s~sDtEvI~~Li~~~~--~~~~~eai~~~------------- 160 (471)
T PRK06781 116 INAKMLRRELE-------------------AEGS-IFQTSSDTEVLLHLIKRST--KDSLIESVKEA------------- 160 (471)
T ss_pred cCHHHHHHHHH-------------------hCCC-cCCCCCHHHHHHHHHHHHc--CCCHHHHHHHH-------------
Confidence 98887776553 3333 3578999999998876422 24788887755
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEE
Q 000265 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml 514 (1760)
++.++|.|++++.++..+.|+|||+|+||| |++..++.|++|||+++++..+.++++ +|+|||++
T Consensus 161 ------------~~~l~G~ya~vi~~~~~l~aaRD~~GirPL-~~g~~~~~~~~ASE~~Al~~~g~~~ir--~v~pGeiv 225 (471)
T PRK06781 161 ------------LNKVKGAFAYLLLTGNEMIVALDPNGFRPL-SIGKMGDAYVVASETCAFDVVGATYIR--DVEPGELL 225 (471)
T ss_pred ------------HHhCCCcEEEEEEECCEEEEEECCCCCCCe-EEEEECCEEEEEECchHhhhcCCcEEE--EeCCCEEE
Confidence 345799998776555556668999999999 888888899999999999988888886 79999999
Q ss_pred EEEcCC
Q 000265 515 LVDFEK 520 (1760)
Q Consensus 515 ~vd~~~ 520 (1760)
.|+.++
T Consensus 226 ~i~~~g 231 (471)
T PRK06781 226 IINDEG 231 (471)
T ss_pred EEECCc
Confidence 998654
No 39
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.93 E-value=3e-25 Score=274.58 Aligned_cols=186 Identities=20% Similarity=0.186 Sum_probs=146.8
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce-------eeecccccc
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR-------ILGHNGEIN 355 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr-------~laHNGEIn 355 (1760)
+.++|++.+++.+ ++|++|++.++++-. +| ..+.+.++|+|+||||++.+++.++|||. .++|||||+
T Consensus 30 dsaGi~~~~~~~~~~~k~~Glv~~vf~~~--~l--~~l~g~~~IGHvRysT~G~~~~~n~QP~~~~~~~g~alahNG~I~ 105 (501)
T PRK09246 30 DAAGIVTIDGNRFRLRKANGLVRDVFRTR--HM--RRLQGNMGIGHVRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLT 105 (501)
T ss_pred ceeEEEEEeCCEEEEEccCCccccccCcc--hH--hhCCCCEEEEEEcCCcCCCCCcccCCCEEEeCCCCEEEEEeEEEc
Confidence 5689999888777 999999999997653 34 57889999999999999999999999996 379999999
Q ss_pred ChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHc--C-----CCHHHHHHHcCcccccc
Q 000265 356 TLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRA--G-----RSLPEAVMMMIPEAWQN 428 (1760)
Q Consensus 356 t~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~--g-----~sl~eAi~~~iPeaw~~ 428 (1760)
|+...++.+. +.+-..+++.||||++.+++...... | .++.+|+..+
T Consensus 106 N~~eLr~~L~-------------------~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai~~~------- 159 (501)
T PRK09246 106 NAEELRKELF-------------------EKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAV------- 159 (501)
T ss_pred CHHHHHHHHH-------------------hcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHHHHH-------
Confidence 8877776543 22111247899999999988643322 2 2555555533
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEE-ecCCceEEEccCCCCCCCceEEEEe----CCEEEEEeccccccCCCCcEE
Q 000265 429 DKNMDPQRKALYEYFSALMEPWDGPALIS-FTDGRYLGATLDRNGLRPGRFYITH----SGRVIMASEVGVVDIPPEDVL 503 (1760)
Q Consensus 429 ~~~m~~e~rafYey~s~lmepwdGPa~iv-~tdG~~igA~lDrnGLRPlr~~~t~----d~~~i~ASE~galdi~~~~vv 503 (1760)
++.++|.|+++ ++++..+.|+|||+|+||| |++.. ++.|++|||+|+|+..+.+++
T Consensus 160 ------------------~~~l~Gays~v~~~~~~~l~a~RDp~GirPL-~~g~~~~~~~~~~~~ASE~~Al~~~g~~~i 220 (501)
T PRK09246 160 ------------------HRRVRGAYAVVAMIIGHGLVAFRDPHGIRPL-VLGKRETEGGTEYMVASESVALDALGFEFV 220 (501)
T ss_pred ------------------HHhcccceeeEEEecCCcEEEEECCCCCCCe-EEEeecCCCCCEEEEEECHHHHHhCCceEE
Confidence 46689999765 6656556779999999999 67765 358999999999998888888
Q ss_pred EccccCCCcEEEEEcCC
Q 000265 504 RKGRLNPGMMLLVDFEK 520 (1760)
Q Consensus 504 ~kgrl~PGeml~vd~~~ 520 (1760)
| +|+|||+|+||.++
T Consensus 221 r--~v~PGeiv~i~~~g 235 (501)
T PRK09246 221 R--DVAPGEAIYITEDG 235 (501)
T ss_pred E--EeCCCeEEEEECCC
Confidence 5 99999999999755
No 40
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.92 E-value=7.7e-25 Score=268.95 Aligned_cols=184 Identities=19% Similarity=0.162 Sum_probs=146.5
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
+.++|++++++.+ ++|++|++.++++.-. +| +.++++++|+|+||||++.+++.++|||. .++|||||
T Consensus 50 dsaGia~~~~~~~~~~k~~Glv~~vf~~~~-~l--~~l~G~~~IGH~R~sT~G~~~~~n~QP~~~~~~~g~~alvhNG~I 126 (479)
T PRK09123 50 EAAGIVSFDGERFHSERRMGLVGDHFTDAD-VI--ARLPGNRAIGHVRYSTTGETILRNVQPLFAELEFGGLAIAHNGNL 126 (479)
T ss_pred cCCEEEEEECCEEEEEecCcchhhhhhhhh-hh--hccCCCEEEEEEecccCCCCCcCCCCCceeecCCCCEEEEEEEEE
Confidence 5689999887766 9999999999976422 33 57889999999999999999999999994 37999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000265 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|++.+++.+. +.+.. +.+.||||++.++++... ..++.+|+..+
T Consensus 127 ~N~~eLr~~L~-------------------~~G~~-f~s~sDSEvi~~Li~~~~--~~~~~eai~~~------------- 171 (479)
T PRK09123 127 TNALTLRRELI-------------------RRGAI-FQSTSDTEVILHLIARSR--KASFLDRFIDA------------- 171 (479)
T ss_pred eCHHHHHHHHH-------------------hCCCc-CCCCCHHHHHHHHHHHHc--cCCHHHHHHHH-------------
Confidence 99888777553 22323 578999999998876322 23566665543
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEE
Q 000265 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml 514 (1760)
++.++|+|++++.+++.+.|+|||+|+||| |++..++.|++|||.++++..+.+.++ +|+|||++
T Consensus 172 ------------~~~L~G~ya~vil~~~~l~a~RD~~GirPL-~~g~~~~~~~~ASE~~Al~~~g~~~~r--~v~pGeiv 236 (479)
T PRK09123 172 ------------LRQVEGAYSLVALTNTKLIGARDPLGIRPL-VLGELDGSPILASETCALDIIGAEFVR--DVEPGELV 236 (479)
T ss_pred ------------HHHhhcceeEEEEECCEEEEEECCCCCCce-EEEEECCEEEEEECchHHhccCCceEE--EECCCeEE
Confidence 345799987776555556668999999999 788778899999999999877777885 89999999
Q ss_pred EEEcCC
Q 000265 515 LVDFEK 520 (1760)
Q Consensus 515 ~vd~~~ 520 (1760)
.||.++
T Consensus 237 ~i~~~g 242 (479)
T PRK09123 237 VIDEDG 242 (479)
T ss_pred EEeCCC
Confidence 999754
No 41
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.92 E-value=2.4e-24 Score=251.62 Aligned_cols=280 Identities=18% Similarity=0.164 Sum_probs=197.9
Q ss_pred HHhcCCHHHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC-cHHHHH
Q 000265 958 AARGNSVAAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI-SLEAHT 1027 (1760)
Q Consensus 958 a~r~~~~~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl-s~ea~~ 1027 (1760)
|.+.-+...|.+|...+.+.. |...|.++. |+ ++...++++||++++|++ ||+++||+++++ +++++.
T Consensus 7 a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~-~~-~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~ 84 (299)
T cd02809 7 ARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIR-LR-PRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGEL 84 (299)
T ss_pred HHHhCCHHHhhhhccccchHHHHHHHHHHHHhce-ee-cccCCCCCCCCCceEECCeecCCCeeeCcccccccCCchHHH
Confidence 333447888888877766553 444466655 55 456667899999999985 999999998887 889999
Q ss_pred HHHHHHHHcCCceeccC-CCCCccccCcCCCCCCchhhhheeecccCCcCCChhhhcCchhHHHhhhccCCCCCCCCCCC
Q 000265 1028 TLATAMNKIGGKSNTGE-GGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPG 1106 (1760)
Q Consensus 1028 aLA~Aa~~~G~~s~sGe-Gge~~e~~~~~~~g~~~~~~s~IkQvasgrFGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg 1106 (1760)
.||++|+++|+.++.|+ +..+++++.... + ...+.|+.... +.+... +.++.-...|++. +
T Consensus 85 ~la~aa~~~g~~~~~~~~~~~~~~~i~~~~----~--~~~~~ql~~~~---~~~~~~--~~i~~~~~~g~~~-----i-- 146 (299)
T cd02809 85 ATARAAAAAGIPFTLSTVSTTSLEEVAAAA----P--GPRWFQLYVPR---DREITE--DLLRRAEAAGYKA-----L-- 146 (299)
T ss_pred HHHHHHHHcCCCEEecCCCcCCHHHHHHhc----C--CCeEEEEeecC---CHHHHH--HHHHHHHHcCCCE-----E--
Confidence 99999999999987665 445555543111 0 23455653320 111111 1111100111110 0
Q ss_pred ccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecC
Q 000265 1107 HKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGH 1186 (1760)
Q Consensus 1107 ~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~ 1186 (1760)
...+-.|. ..+...+ +.|.++|+.+ +.||+||.+.. ...|..+.++|||+|+|+||
T Consensus 147 ---------------~l~~~~p~-~~~~~~~----~~i~~l~~~~-~~pvivK~v~s---~~~a~~a~~~G~d~I~v~~~ 202 (299)
T cd02809 147 ---------------VLTVDTPV-LGRRLTW----DDLAWLRSQW-KGPLILKGILT---PEDALRAVDAGADGIVVSNH 202 (299)
T ss_pred ---------------EEecCCCC-CCCCCCH----HHHHHHHHhc-CCCEEEeecCC---HHHHHHHHHCCCCEEEEcCC
Confidence 00000111 0111222 4578888876 58999997632 35678899999999999998
Q ss_pred CCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcccccc
Q 000265 1187 DGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMR 1266 (1760)
Q Consensus 1187 ~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r 1266 (1760)
+|. ..++|+|+...|+++.+.+ .+++|||++|||+++.|++|+++|||++|++||++|+++.|
T Consensus 203 gG~--------~~~~g~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~---- 265 (299)
T cd02809 203 GGR--------QLDGAPATIDALPEIVAAV-----GGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAA---- 265 (299)
T ss_pred CCC--------CCCCCcCHHHHHHHHHHHh-----cCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHh----
Confidence 542 2467899999999998874 23699999999999999999999999999999999998644
Q ss_pred ccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q 000265 1267 KCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEM 1321 (1760)
Q Consensus 1267 ~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~EL 1321 (1760)
++.++|.++++.+.+||+.+|..+|+++++||
T Consensus 266 -----------------------~g~~~v~~~i~~l~~el~~~m~~~G~~~i~~l 297 (299)
T cd02809 266 -----------------------GGEAGVAHVLEILRDELERAMALLGCASLADL 297 (299)
T ss_pred -----------------------cCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHh
Confidence 35799999999999999999999999999997
No 42
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=249.02 Aligned_cols=193 Identities=18% Similarity=0.137 Sum_probs=144.8
Q ss_pred CCcEEEEEecC-CeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee--------eeccc
Q 000265 283 AKDFYICSLSS-RTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI--------LGHNG 352 (1760)
Q Consensus 283 ~~~~yI~SlS~-~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~--------laHNG 352 (1760)
++.++|+..++ +++ +.||||++.+||..-.+ ..+.+.++|+|+||||.+.+-..++|||.. +||||
T Consensus 31 QesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l----~~L~g~~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNG 106 (474)
T KOG0572|consen 31 QESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKL----SQLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNG 106 (474)
T ss_pred ccccceEeecCCCceEEEeccchhhhhhcHHHH----hhCccceeeeeeecccccccccccccceEeeccCceEEEeccC
Confidence 35678887664 456 99999999999876543 778899999999999999999999999975 69999
Q ss_pred cccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCC
Q 000265 353 EINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNM 432 (1760)
Q Consensus 353 EInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m 432 (1760)
|+.|+...|..|.. .+.. ..+.||||.+.++|..- ++.- ++
T Consensus 107 nLVN~~~Lrr~l~~-------------------~g~~-l~T~SDSElil~~~a~~------~~~~--------~~----- 147 (474)
T KOG0572|consen 107 NLVNYKSLRRELLE-------------------EGVG-LNTSSDSELILQLIAYA------PEDV--------YR----- 147 (474)
T ss_pred cccchHHHHHHHHh-------------------cCcc-cccCCcHHHHHHHHHhc------hHhh--------hc-----
Confidence 99998887776543 3333 46899999999987631 1111 00
Q ss_pred CHHHHHHHHHHHhccCCCCCCcEEE-ecCCceEEEccCCCCCCCceEEEEeC---C--EEEEEeccccccCCCCcEEEcc
Q 000265 433 DPQRKALYEYFSALMEPWDGPALIS-FTDGRYLGATLDRNGLRPGRFYITHS---G--RVIMASEVGVVDIPPEDVLRKG 506 (1760)
Q Consensus 433 ~~e~rafYey~s~lmepwdGPa~iv-~tdG~~igA~lDrnGLRPlr~~~t~d---~--~~i~ASE~galdi~~~~vv~kg 506 (1760)
.+-.+|+.-....|+...|.|+++ ++.++ +.|+|||||.||| ++++.+ + .|++|||+|+++..+++..|
T Consensus 148 -~~~~d~~~ri~~~~~~~~g~Yslv~m~~d~-l~avRDp~G~RPL-~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~R-- 222 (474)
T KOG0572|consen 148 -VDAPDWFARIRDVMELLPGAYSLVFMTADK-LYAVRDPYGNRPL-CIGRRSNPDGTEAWVVASESCAFLSIGARYER-- 222 (474)
T ss_pred -ccCccHHHHHHHHHHhcCCceeEEEEEccE-EEEEecCCCCccc-eEeeecCCCCcceEEEEecceeeeecccEEEE--
Confidence 011223333333456678998654 56677 5559999999999 688753 2 79999999999988888885
Q ss_pred ccCCCcEEEEEcCCCEE
Q 000265 507 RLNPGMMLLVDFEKRIV 523 (1760)
Q Consensus 507 rl~PGeml~vd~~~g~i 523 (1760)
+|.|||+|.|+..+-+.
T Consensus 223 ev~PGEiV~i~r~g~~s 239 (474)
T KOG0572|consen 223 EVRPGEIVEISRNGVKS 239 (474)
T ss_pred eecCceEEEEecCCcee
Confidence 99999999999944443
No 43
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=99.92 E-value=2e-24 Score=256.08 Aligned_cols=304 Identities=17% Similarity=0.190 Sum_probs=207.4
Q ss_pred HHHHHHHHHHhhcc----cCcccccccccccCCCCCCCCCCCCcccccc-----ceEecCCCcccC-cHHHHHHHHHHHH
Q 000265 965 AAYKEYSKRIQELN----KTCNLRGLLKFKEADVKIPLEEVEPASEIVK-----RFCTGAMSYGSI-SLEAHTTLATAMN 1034 (1760)
Q Consensus 965 ~~~~~~~~~~~~~~----~~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsl-s~ea~~aLA~Aa~ 1034 (1760)
+.|.++....+++. |...+.++. |+ ++...+++++|+++++++ ||+++||++|.+ +++++..-|++|.
T Consensus 14 ~~~hy~~~~~~~e~t~~~n~~~f~~i~-l~-~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~ 91 (360)
T COG1304 14 KAFHYIDGGAEDEVTLRRNREAFEDIA-LR-PRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAHPEGEVINAKLAA 91 (360)
T ss_pred hHhHHHHhhccccccHhhhhhhhhhhe-ee-cccCCCcccCccceEecCccccCCEEEeccccccccChhhHHHHHHHHH
Confidence 56666666555422 222333333 54 556677779999999996 999999999975 5778888888888
Q ss_pred HcCCc-eeccCCCCCccccCcCCCCCCchhhhheeeccc-CCcCCChhhh---cCchhHHHhhhccCCCCCCCCCCCccc
Q 000265 1035 KIGGK-SNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVAS-GRFGVSSYYL---TNADELQIKMAQGAKPGEGGELPGHKV 1109 (1760)
Q Consensus 1035 ~~G~~-s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvas-grFGVt~~~L---~~a~~iqIKiaQGAKpGeGG~Lpg~KV 1109 (1760)
.+|.. +.+|-|+.+.|+....+ . .|++= ..-++++..+ .++..-++... +. -...+...
T Consensus 92 ~a~~~~i~s~~gs~~ie~~~~~~-----~-----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t--~d----~~~~~~r~ 155 (360)
T COG1304 92 AAGEPFILSTVGSQRIEEVAAAP-----P-----FQLYFSKDREFAPNLVDRAANAGAKQLVLT--VD----SPVGGERE 155 (360)
T ss_pred HcCCCeeeeccccCcHHHhhcCc-----c-----hhhhhHHHHHhhHHHHHHHHhcCCcceeec--cC----ccchHHHH
Confidence 88874 55566666665543111 0 11100 0001222222 11111111110 00 00011111
Q ss_pred hHH---H---HHHhCCCCcccccCCCCCCCCCCHH-HH-------------HHHHHHHHHhCCCCceEEEEccccCHHHH
Q 000265 1110 IGD---I---AVTRNSTAGVGLISPPPHHDIYSIE-DL-------------AQLIYDLKNANPGARISVKLVSEAGVGVI 1169 (1760)
Q Consensus 1110 ~~~---I---A~~R~~~pG~~lisP~~hhDiySie-dL-------------aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i 1169 (1760)
.+. + +..-|.++.+.+..|.++.+.+... .+ ++.+.+++..+ ..|+++|.+.. ...
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~-~~~lv~kGV~~---~~D 231 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEW-AGPLVLKGILA---PED 231 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhc-CCcHHHhCCCC---HHH
Confidence 111 1 3456677777778887776665431 11 23466677765 77888886543 256
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCc
Q 000265 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEE 1249 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAda 1249 (1760)
+.++.+.|+|+|.+|+|+|. +.+||+|+..+|+++.+++ .++++|++|||||+|.||+||++|||++
T Consensus 232 ~~~a~~tg~~~I~vsnhggr--------qlD~g~st~~~L~ei~~av-----~~~~~vi~dGGiR~G~Dv~KAlALGA~~ 298 (360)
T COG1304 232 AAGAGGTGADGIEVSNHGGR--------QLDWGISTADSLPEIVEAV-----GDRIEVIADGGIRSGLDVAKALALGADA 298 (360)
T ss_pred HHhhccCCceEEEEEcCCCc--------cccCCCChHHHHHHHHHHh-----CCCeEEEecCCCCCHHHHHHHHHhCCch
Confidence 78899999999999999663 5799999999999999984 4579999999999999999999999999
Q ss_pred cccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceee
Q 000265 1250 FGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLE 1329 (1760)
Q Consensus 1250 Vg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~ 1329 (1760)
|++|+++|+++++ ++.++|.+.++.+.+||+..|+++|++||+|| .++.++.
T Consensus 299 v~igrp~L~~l~~---------------------------~g~~GV~~~le~~~~El~~~M~L~G~~~i~el-~~~~l~~ 350 (360)
T COG1304 299 VGIGRPFLYGLAA---------------------------GGEAGVERVLEIIRKELKIAMALTGAKNIEEL-KRVPLVL 350 (360)
T ss_pred hhhhHHHHHHHHh---------------------------ccHHHHHHHHHHHHHHHHHHHHhcCCCcHHHh-ccCceee
Confidence 9999999999865 46899999999999999999999999999997 7777765
Q ss_pred cc
Q 000265 1330 VD 1331 (1760)
Q Consensus 1330 ~~ 1331 (1760)
..
T Consensus 351 ~~ 352 (360)
T COG1304 351 SG 352 (360)
T ss_pred cc
Confidence 43
No 44
>PLN02440 amidophosphoribosyltransferase
Probab=99.92 E-value=1.8e-24 Score=266.32 Aligned_cols=183 Identities=23% Similarity=0.273 Sum_probs=144.0
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
+.++|+++++..+ ++|++|++.++++.. +| ..+.++++|+|+||||++.+++.++|||. .++|||||
T Consensus 30 ds~Gi~~~d~~~~~~~k~~Glv~~vf~~~--~l--~~l~g~~~IGHvRysT~G~~~~~n~QPf~~~~~~g~~~lahNG~I 105 (479)
T PLN02440 30 EGAGIVTVDGNRLQSITGNGLVSDVFDES--KL--DQLPGDIAIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNL 105 (479)
T ss_pred ccceEEEEcCCEEEEEecCCchhhhcchh--hh--hccCCcEEEEEEeccccCCCCccCCCCceeecCCCCEEEEEEEEE
Confidence 4678999888776 999999999998764 34 57889999999999999999999999996 37999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000265 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+..+++.+. +.+.. +.+.||||++.+++.... ..++.+|+.
T Consensus 106 ~N~~eLr~~L~-------------------~~g~~-f~s~sDsEvi~~li~~~~--~~~~~~a~~--------------- 148 (479)
T PLN02440 106 VNYEELRAKLE-------------------ENGSI-FNTSSDTEVLLHLIAISK--ARPFFSRIV--------------- 148 (479)
T ss_pred eCHHHHHHHHH-------------------hcCCc-CCCCCHHHHHHHHHHHhh--hhhHHHHHH---------------
Confidence 98877776443 33333 478999999988875322 124444444
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEE-eCCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000265 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYIT-HSGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t-~d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
..++.++|+|++++.+.+.+.|+|||+|+||| |++. +++.|++|||+|+++..+.+.++ +|+|||+
T Consensus 149 ----------~~~~~l~G~fa~vi~~~~~l~a~RD~~G~RPL-~~g~~~~~~~~vASE~~al~~~g~~~ir--~v~PGei 215 (479)
T PLN02440 149 ----------DACEKLKGAYSMVFLTEDKLVAVRDPHGFRPL-VMGRRSNGAVVFASETCALDLIGATYER--EVNPGEV 215 (479)
T ss_pred ----------HHHHHhccceeeeEEECCEEEEEECCCCCCce-EEEEeCCCEEEEEECchHHhccCCcEEE--EeCCCeE
Confidence 33566899998776544447779999999999 6765 46789999999999987777875 9999999
Q ss_pred EEEEcCC
Q 000265 514 LLVDFEK 520 (1760)
Q Consensus 514 l~vd~~~ 520 (1760)
++||.++
T Consensus 216 v~i~~~g 222 (479)
T PLN02440 216 IVVDKDK 222 (479)
T ss_pred EEEECCC
Confidence 9998654
No 45
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.91 E-value=2e-24 Score=262.78 Aligned_cols=181 Identities=19% Similarity=0.143 Sum_probs=141.5
Q ss_pred CcEEEEEecCCeEEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee--------eecccccc
Q 000265 284 KDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI--------LGHNGEIN 355 (1760)
Q Consensus 284 ~~~yI~SlS~~tivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~--------laHNGEIn 355 (1760)
+.++|++.+++..++|++|++.++++.. ++ ..++++++|+|+||||++. +.++|||.. ++|||||+
T Consensus 32 dsaGIa~~~~~~~~~K~~Glv~~vf~~~--~~--~~l~g~~~IGH~R~sT~G~--~~~~QP~~~~~~~g~ialvhNG~I~ 105 (442)
T PRK08341 32 EGAGISVWRHRIRTVKGHGLVSEVFKGG--SL--SRLKSNLAIGHVRYSTSGS--LSEVQPLEVECCGYKIAIAHNGTLT 105 (442)
T ss_pred ccceEEEECCcEEEEecCCchhhhhccc--cc--ccCCCCEEEEEeeccccCC--CcCcCCEEeecCCCCEEEEEEEEEE
Confidence 5689999886633999999999997643 33 6789999999999999994 689999954 69999999
Q ss_pred ChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHH
Q 000265 356 TLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQ 435 (1760)
Q Consensus 356 t~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e 435 (1760)
|+..+++.+. +.+.+ |.+.||||++.+++........++.+|++.+
T Consensus 106 N~~eLr~~L~-------------------~~G~~-F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~-------------- 151 (442)
T PRK08341 106 NFLPLRRKYE-------------------SRGVK-FRSSVDTELIGISFLWHYSETGDEFEAMREV-------------- 151 (442)
T ss_pred CHHHHHHHHH-------------------HcCCc-cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH--------------
Confidence 9888776543 33333 5789999999998764444334666777654
Q ss_pred HHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEEE
Q 000265 436 RKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLL 515 (1760)
Q Consensus 436 ~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml~ 515 (1760)
|+.++|.|++++.++..+.|+|||+|+||| |++.. +.+++|||+++|+.....+ + +|+|||++.
T Consensus 152 -----------~~~l~G~yal~i~~~~~l~a~RD~~GirPL-~~G~~-~~~~~ASE~~Al~~~~~~v-~--~l~PGeiv~ 215 (442)
T PRK08341 152 -----------FNEVKGAYSVAILFDGKIIVARDPVGFRPL-SYGEG-DGHYFASEDSALRMFVNEI-R--DVFPGEVFV 215 (442)
T ss_pred -----------HHhccCceEEEEEECCEEEEEEcCCCceEE-EEEEC-CEEEEEeCcHHHHhhCCeE-E--EeCCCEEEE
Confidence 456799998776655666669999999999 78875 4589999999998766544 3 899999999
Q ss_pred EEcCC
Q 000265 516 VDFEK 520 (1760)
Q Consensus 516 vd~~~ 520 (1760)
++.++
T Consensus 216 i~~~g 220 (442)
T PRK08341 216 VSEGE 220 (442)
T ss_pred EECCc
Confidence 98643
No 46
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.91 E-value=2.4e-24 Score=264.62 Aligned_cols=186 Identities=20% Similarity=0.214 Sum_probs=149.8
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee--------eeccccc
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI--------LGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~--------laHNGEI 354 (1760)
+.++|++++++.+ ++|++|++.++++.. +| +.+.++++|+|+||||.+.+++.|+|||.. ++|||+|
T Consensus 45 dsaGIa~~~~~~~~~~k~~G~v~~~f~~~--~l--~~l~g~~~iGHvR~sT~G~~~~~n~qPf~~~~~~g~~alvhNG~I 120 (469)
T PRK05793 45 ESAGIAVSDGEKIKVHKGMGLVSEVFSKE--KL--KGLKGNSAIGHVRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNL 120 (469)
T ss_pred CcceEEEEeCCEEEEEecccccccccchh--hH--hccCCcEEEEEeecccCCCCCCCCCCCeEeecCCCCEEEEEEEEE
Confidence 4689998887766 999999999998653 34 578999999999999999999999999953 7999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000265 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+...++.+. +.+. .+++.||||++.+++.... ..++++|+..++
T Consensus 121 ~N~~eLr~~L~-------------------~~g~-~f~s~sDSEvi~~li~~~~--~~~~~~ai~~~~------------ 166 (469)
T PRK05793 121 VNADVIRELLE-------------------DGGR-IFQTSIDSEVILNLIARSA--KKGLEKALVDAI------------ 166 (469)
T ss_pred eCHHHHHHHHH-------------------hcCC-cccCCCHHHHHHHHHHHHc--cCCHHHHHHHHH------------
Confidence 98887776553 2233 3578999999988875322 247788877553
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEE
Q 000265 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml 514 (1760)
+.++|.|++++.+++.+.|+||++|+||| |++..++.|++|||.++++..+.+.++ +|+|||++
T Consensus 167 -------------~~l~G~ya~vi~~~~~l~a~RD~~GirPL-~~g~~~~~~~vASE~~al~~~g~~~~r--~v~pGeiv 230 (469)
T PRK05793 167 -------------QAIKGSYALVILTEDKLIGVRDPHGIRPL-CLGKLGDDYILSSESCALDTIGAEFIR--DVEPGEIV 230 (469)
T ss_pred -------------HHhhhhceEEEEECCEEEEEECCCCCCCc-EEEEECCEEEEEEChHHHhhcCcceEE--EeCCCeEE
Confidence 45689988776656667779999999999 788888889999999999987777886 79999999
Q ss_pred EEEcCCCEE
Q 000265 515 LVDFEKRIV 523 (1760)
Q Consensus 515 ~vd~~~g~i 523 (1760)
.|+.++=++
T Consensus 231 ~i~~~g~~~ 239 (469)
T PRK05793 231 IIDEDGIKS 239 (469)
T ss_pred EEECCceEE
Confidence 998654343
No 47
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.91 E-value=6.3e-24 Score=259.51 Aligned_cols=185 Identities=24% Similarity=0.240 Sum_probs=149.3
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee-------eecccccc
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI-------LGHNGEIN 355 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~-------laHNGEIn 355 (1760)
+.++|++.+++.+ +||++|++.++++.. +| +.+.++++|+|+||||++.+++.++|||.. ++|||+|+
T Consensus 30 ds~Gia~~d~~~~~~~k~~glv~~v~~~~--~l--~~l~g~~~IgHvR~aT~G~~~~~n~QPf~~~~~~g~alahNG~I~ 105 (442)
T TIGR01134 30 EAAGIAVSDGNKIRTHKGNGLVSDVFDER--HL--ERLKGNVGIGHVRYSTAGSSSLSNAQPFVVNSPGGIALAHNGNLV 105 (442)
T ss_pred cceEEEEEeCCEEEEEEcCCchhhhcchh--hh--hcccCcEEEEEEEecCCCCCCccCCCCEEEeCCCCEEEEEEEEEc
Confidence 4689999888777 999999999996543 23 678899999999999999999999999973 79999999
Q ss_pred ChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHH
Q 000265 356 TLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQ 435 (1760)
Q Consensus 356 t~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e 435 (1760)
|+...++.+. +.+.. +++.||||++.+++......+.++.+|+..+
T Consensus 106 N~~eLr~~L~-------------------~~g~~-f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~-------------- 151 (442)
T TIGR01134 106 NAEELREELE-------------------EEGRI-FNTTSDSEVLLHLLARERLEEDDLFEAIARV-------------- 151 (442)
T ss_pred CHHHHHHHHH-------------------hcCCc-CCCCCHHHHHHHHHHHhhcccCCHHHHHHHH--------------
Confidence 8877766543 23333 4789999999888764332335777777755
Q ss_pred HHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEEE
Q 000265 436 RKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLL 515 (1760)
Q Consensus 436 ~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml~ 515 (1760)
++.++|+|++++.+++.+.++|||+|+||| |++..++.|++|||.++++..+.+.++ +|+|||++.
T Consensus 152 -----------~~~l~G~falvi~~~~~L~a~RD~~G~rPL-~~g~~~~~~~~ASE~~al~~~g~~~~r--~v~pGeiv~ 217 (442)
T TIGR01134 152 -----------LKRVRGAYALVIMIGDGLIAVRDPHGIRPL-VLGKRGDGYVVASESCALDILGAEFIR--DVEPGEAVV 217 (442)
T ss_pred -----------HHHhCccceEEEEECCEEEEEECCCCCCCc-EEEEeCCEEEEEeCchHhcccCCcEEE--EECCCeEEE
Confidence 344699998888788888889999999999 777778899999999999976667775 899999999
Q ss_pred EEcCC
Q 000265 516 VDFEK 520 (1760)
Q Consensus 516 vd~~~ 520 (1760)
++.++
T Consensus 218 i~~~~ 222 (442)
T TIGR01134 218 IDDGG 222 (442)
T ss_pred EECCc
Confidence 98543
No 48
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.91 E-value=1.3e-23 Score=256.90 Aligned_cols=183 Identities=21% Similarity=0.208 Sum_probs=147.6
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
+.++|++++++.+ ++|++|++.+|++... + ..+.+.++|+|+||||++.+++.++|||. .++|||||
T Consensus 30 DsaGia~~~~~~~~~~k~~G~v~~~f~~~~--~--~~~~g~~~iGH~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I 105 (445)
T PRK08525 30 EASGISVSNGKKIKTIKGRGLVTQVFNEDN--L--KTLKGEIAIGHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNL 105 (445)
T ss_pred ccceEEEEeCCEEEEEEcCcchhhccchhh--h--hccCCcEEEeecccccCCCCCCCCCCCeEeecCCCCEEEEEEEEE
Confidence 4688999887766 9999999999976543 3 57889999999999999999999999996 37999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000265 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
+|+..+++.+. +.+.. +.+.||||++.++++... +.++.+|+..+
T Consensus 106 ~N~~eLr~~L~-------------------~~G~~-f~s~sDtEvi~~l~~~~~--~~~~~ea~~~~------------- 150 (445)
T PRK08525 106 VNKKEVRSRLI-------------------QDGAI-FQTNMDTENLIHLIARSK--KESLKDRIIEA------------- 150 (445)
T ss_pred ECHHHHHHHHH-------------------hcCCc-CCCCCHHHHHHHHHHHHc--CCCHHHHHHHH-------------
Confidence 99988877553 23333 578999999998876431 24777776644
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEe-CCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000265 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITH-SGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~-d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
++.++|+|++++.+.+.+.++||++|+||| |++.. |+.+++|||.++|+..+.+.++ +++|||+
T Consensus 151 ------------~~~L~G~fa~vi~~~~~l~~~RD~~GirPL-~~g~~~~~~~~~ASE~~al~~~g~~~~~--~~~pGe~ 215 (445)
T PRK08525 151 ------------LKKIIGAYCLVLLSRSKMFAIRDPHGVRPL-SLGRLKDGGYIVASETCAFDLIGAEFIR--DVKPGEM 215 (445)
T ss_pred ------------HHhcCCceEEEEEeCCEEEEEECCCCCCCe-EEEEecCCEEEEEECHHHhhccCCcEEE--EeCCCeE
Confidence 345799998887766667779999999999 78764 5789999999999887777775 8999999
Q ss_pred EEEEcCC
Q 000265 514 LLVDFEK 520 (1760)
Q Consensus 514 l~vd~~~ 520 (1760)
+.++..+
T Consensus 216 v~i~~~~ 222 (445)
T PRK08525 216 LIFEQGN 222 (445)
T ss_pred EEEEcCC
Confidence 9999543
No 49
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.87 E-value=2.4e-21 Score=221.32 Aligned_cols=187 Identities=21% Similarity=0.215 Sum_probs=143.9
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
+.++|+..++..+ ++|++|.+.+++ . |+..+.+.+.++|+|+|++|++.+++.++|||. +++|||+|
T Consensus 29 D~~Gi~~~d~~~~~~~k~~g~~~~~~---~-~~~~~~~~~~~~lgH~R~at~g~~~~~n~qPf~~~~~~~~~~~~hNG~I 104 (252)
T cd00715 29 ESAGIATSDGKRFHTHKGMGLVSDVF---D-EEKLRRLPGNIAIGHVRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNL 104 (252)
T ss_pred ceeEEEEEeCCEEEEEecCCcHHHhh---c-ccchhhCCCcEEEEEEEcccCCCCCccCCCCcEEecCCCcEEEEEEEEE
Confidence 4578998887666 999999998884 3 433467889999999999999999999999996 47999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCH
Q 000265 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDP 434 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~ 434 (1760)
.|+..+++.+.. .+ ..+.+.||||++.++++..... .++.+|+..+
T Consensus 105 ~n~~~L~~~l~~-------------------~g-~~~~~~tDSEvi~~l~~~~~~~-~~~~~al~~~------------- 150 (252)
T cd00715 105 VNAKELREELEE-------------------EG-RIFQTTSDSEVILHLIARSLAK-DDLFEAIIDA------------- 150 (252)
T ss_pred CCHHHHHHHHHH-------------------CC-CcccCCCHHHHHHHHHHHhhcc-CCHHHHHHHH-------------
Confidence 988877765432 22 1236799999998876643221 3566666544
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeC-CEEEEEeccccccCCCCcEEEccccCCCcE
Q 000265 435 QRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHS-GRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 435 e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d-~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
++.++|++++++.|++.+.++||+.|+||+ |+...+ +.+++|||..++...+.+.++ +|.||++
T Consensus 151 ------------~~~l~G~~a~~~~d~~~l~~~RD~~G~~PL-~~~~~~~~~~~vASE~~al~~~~~~~~~--~l~pg~~ 215 (252)
T cd00715 151 ------------LERVKGAYSLVIMTADGLIAVRDPHGIRPL-VLGKLEGDGYVVASESCALDIIGAEFVR--DVEPGEI 215 (252)
T ss_pred ------------HHhccCceEEEEEECCEEEEEECCCCCCCe-EEEEeCCCeEEEEECHHHhcccCCcEEE--EcCCCeE
Confidence 345699998888777878889999999999 676655 899999999998765444554 8999999
Q ss_pred EEEEcCCCEE
Q 000265 514 LLVDFEKRIV 523 (1760)
Q Consensus 514 l~vd~~~g~i 523 (1760)
+.|+.++-++
T Consensus 216 ~~i~~~~~~~ 225 (252)
T cd00715 216 VVIDDDGLES 225 (252)
T ss_pred EEEECCceEE
Confidence 9998755444
No 50
>cd00980 FwdC/FmdC FwdC/FmdC. This domain of unknown function is found in the subunit C of formylmethanofuran dehydrogenase, an enzyme that catalyzes the first step in methane formation from CO2 in methanogenic archaea, hyperthermophiles and bacteria. There are two isoenzymes, a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The subunits C of both isoenzymes (FwdC/FmdC) are characterized by a repeated GXXGXXXG motif.
Probab=99.86 E-value=1.1e-21 Score=216.28 Aligned_cols=124 Identities=29% Similarity=0.422 Sum_probs=116.7
Q ss_pred EEEEecCcc--chhhhcCCCCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEeccc
Q 000265 1430 HIKLTGSAG--QSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMA 1507 (1760)
Q Consensus 1430 ~i~~~G~aG--q~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~a 1507 (1760)
+|.|+|+.. .++|+.|.. ++|+|+||++||+|++|+||+|+|+|| +|+.++++|+||+|+|+|||
T Consensus 20 ~i~i~g~~~r~~~iG~~m~~-g~I~v~G~~g~~~G~~M~gG~I~V~G~------------ag~~~G~~m~GG~I~V~GnA 86 (203)
T cd00980 20 KLVIEGDVPRLKRIGARMTA-GEIVVEGDVGMYVGAGMKGGKLVVEGN------------AGSWAGCEMKGGEITIKGNA 86 (203)
T ss_pred eEEEECCcchhchhhcCcCc-CEEEEEeCCchHhhCcCcCCEEEEECC------------CCchHhccCCCcEEEEEccc
Confidence 477789988 899999965 699999999999999999999999999 78899999999999999999
Q ss_pred ccccccc-------cCCcEEEEcC-CCccccccccCcEEEEeCCCCCcccCCCcceEEEEEcCCchh
Q 000265 1508 AERFCVR-------NSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKF 1566 (1760)
Q Consensus 1508 GeR~gvr-------~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~~~~~~ 1566 (1760)
|+++|.. |+||+|+|+| +|+++|++|+||+|+|.|++|.++|..|.+|+|+|.+..+.+
T Consensus 87 g~~~G~~~~G~~~gm~GG~I~V~GnaG~~~g~~M~gG~IvV~G~aG~~~G~~M~gG~ivV~G~~g~~ 153 (203)
T cd00980 87 GDYVGSAYRGDWRGMSGGTITIEGNAGDRLGERMRRGEILIKGDAGIFAGIRMNGGTIIVRGDAGAH 153 (203)
T ss_pred cccccceeecccccCcccEEEEEecchhhhhhhcCCcEEEEeecccccccccccCCEEEEeccCCcc
Confidence 9999984 9999999999 699999999999999999999999999999999999987765
No 51
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.85 E-value=1.1e-20 Score=211.29 Aligned_cols=177 Identities=19% Similarity=0.182 Sum_probs=140.5
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee------eeccccccC
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI------LGHNGEINT 356 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~------laHNGEInt 356 (1760)
+..+|++.+.+.+ ++|+.|+++++++.+. + ..+.+.++|+|+||+|++.+++.++|||.. ++|||||+|
T Consensus 29 d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~--~--~~~~~~~~igH~R~at~g~~~~~n~qPf~~~~~~~~~vhNG~I~N 104 (215)
T cd00714 29 DSAGIAVIGDGSLEVVKAVGKVANLEEKLA--E--KPLSGHVGIGHTRWATHGEPTDVNAHPHRSCDGEIAVVHNGIIEN 104 (215)
T ss_pred CcceEEEEeCCEEEEEEcCccHHHHHHHhh--h--ccCCccEEEEEEEccCCCCCCccCCCCCCcCCCCEEEEEeEEEcC
Confidence 4568888766666 9999999999987653 3 456899999999999999888899999953 699999999
Q ss_pred hhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHH
Q 000265 357 LRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQR 436 (1760)
Q Consensus 357 ~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~ 436 (1760)
+..+++.+..+ +. .+.+.||||++.++++.....+.++++|+..++
T Consensus 105 ~~~Lr~~L~~~-------------------g~-~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~-------------- 150 (215)
T cd00714 105 YAELKEELEAK-------------------GY-KFESETDTEVIAHLIEYYYDGGLDLLEAVKKAL-------------- 150 (215)
T ss_pred HHHHHHHHHhc-------------------CC-cccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHH--------------
Confidence 98887766432 22 236899999999988765555558888888653
Q ss_pred HHHHHHHHhccCCCCCCcEEEecC---CceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000265 437 KALYEYFSALMEPWDGPALISFTD---GRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 437 rafYey~s~lmepwdGPa~iv~td---G~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
+.++|.|++++.| +..+.++|| .||| |++..++.+++|||.++|.-...++. -|++||+
T Consensus 151 -----------~~l~G~fa~~~~d~~~~~~l~~~RD---~~PL-~~~~~~~~~~~aSE~~al~~~~~~~~---~~~~~~~ 212 (215)
T cd00714 151 -----------KRLEGAYALAVISKDEPDEIVAARN---GSPL-VIGIGDGENFVASDAPALLEHTRRVI---YLEDGDI 212 (215)
T ss_pred -----------HHhccceEEEEEEeCCCCEEEEEEC---CCCc-EEEEcCCeEEEEECHHHHHHhcCEEE---EECCCCE
Confidence 4469999888776 335666899 4999 88888889999999999976666665 6899999
Q ss_pred EEE
Q 000265 514 LLV 516 (1760)
Q Consensus 514 l~v 516 (1760)
+.+
T Consensus 213 ~~~ 215 (215)
T cd00714 213 AVI 215 (215)
T ss_pred EeC
Confidence 864
No 52
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.85 E-value=1.3e-20 Score=240.59 Aligned_cols=210 Identities=18% Similarity=0.163 Sum_probs=160.8
Q ss_pred CcEEEEEecC-CeE-EEE--cccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee------eecccc
Q 000265 284 KDFYICSLSS-RTV-VYK--GQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI------LGHNGE 353 (1760)
Q Consensus 284 ~~~yI~SlS~-~ti-vyK--G~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~------laHNGE 353 (1760)
+.++|++.++ +.+ ++| |.|+++++++...-+|.+..+.++++|+|+||||.+.+++.|+|||.. ++|||+
T Consensus 53 ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~ 132 (640)
T PTZ00295 53 DSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGIAHTRWATHGGKTDENAHPHCDYKKRIALVHNGT 132 (640)
T ss_pred CeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEEEEeccccCCCCCcCCCCCCCCCCCCEEEEEEEE
Confidence 4688998764 445 888 999999997664313322257899999999999999999999999963 799999
Q ss_pred ccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCC
Q 000265 354 INTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMD 433 (1760)
Q Consensus 354 Int~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~ 433 (1760)
|.|+..+|+.+..+ +. .+.+.||||++.++++.....|.++.+|+..++
T Consensus 133 I~N~~~Lr~~L~~~-------------------g~-~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~~~----------- 181 (640)
T PTZ00295 133 IENYVELKSELIAK-------------------GI-KFRSETDSEVIANLIGLELDQGEDFQEAVKSAI----------- 181 (640)
T ss_pred EcCHHHHHHHHHHC-------------------CC-cccCCChHHHHHHHHHHHHhcCCCHHHHHHHHH-----------
Confidence 99998888766432 22 247899999999998865556668888888653
Q ss_pred HHHHHHHHHHHhccCCCCCCcEEEecC---CceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCC
Q 000265 434 PQRKALYEYFSALMEPWDGPALISFTD---GRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNP 510 (1760)
Q Consensus 434 ~e~rafYey~s~lmepwdGPa~iv~td---G~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~P 510 (1760)
+.++|.|++++.| ++.+.++||+ ||| |++..++.+++|||.++++....+++ +|+|
T Consensus 182 --------------~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL-~~g~~~~~~~~aSE~~al~~~~~~~~---~l~p 240 (640)
T PTZ00295 182 --------------SRLQGTWGLCIIHKDNPDSLIVARNG---SPL-LVGIGDDSIYVASEPSAFAKYTNEYI---SLKD 240 (640)
T ss_pred --------------HHhhhhceEEEEEeCCCCEEEEEECC---Cce-EEEEcCceEEEEechHHHHhhCcEEE---EeCC
Confidence 3469998877654 4566778997 999 88887888999999999987777787 5999
Q ss_pred CcEEEEEcCCCEEech-HHH-----HHHHHhcCCcHHHHhh
Q 000265 511 GMMLLVDFEKRIVVDD-EAL-----KQQYSLARPYGEWLQR 545 (1760)
Q Consensus 511 Geml~vd~~~g~i~~~-~ei-----k~~~a~~~py~~wl~~ 545 (1760)
||++.|+.++=++++. .++ ...-+.+-+|..|..+
T Consensus 241 Gei~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~m~k 281 (640)
T PTZ00295 241 GEIAELSLENVNDLYTQRRVEKIPEEVIEKSPEPYPHWTLK 281 (640)
T ss_pred CeEEEEECCeEEEEecCCceEEecCChhhhcCCCchHHHHH
Confidence 9999998655455441 122 2345667888888766
No 53
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.83 E-value=5.4e-20 Score=203.15 Aligned_cols=178 Identities=35% Similarity=0.352 Sum_probs=139.9
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce------eeeccccccC
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINT 356 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt 356 (1760)
+.++|+..+.... .+|..+.+.++... ...+.+.+.++|+|+|++|++.+++.++|||. +++|||+|+|
T Consensus 33 dg~Gi~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~H~R~at~g~~~~~n~hPf~~~~~~~~~~hNG~i~n 108 (220)
T cd00352 33 DGAGIAVYDGDGLFVEKRAGPVSDVALD----LLDEPLKSGVALGHVRLATNGLPSEANAQPFRSEDGRIALVHNGEIYN 108 (220)
T ss_pred ccCCeEEECCCceEEEEeccchhhhhhh----hhhhccCCCEEEEEeEeeecCCCCCCCCCCcCcCCCCEEEEECcEEEc
Confidence 3567777776655 88888888666433 23477899999999999999999999999997 4699999999
Q ss_pred hhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHH
Q 000265 357 LRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQR 436 (1760)
Q Consensus 357 ~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~ 436 (1760)
++.+++++..+. ..+.+.||||++.+++..+.+.+. +.+|+..++
T Consensus 109 ~~~l~~~l~~~~--------------------~~~~~~tDse~i~~~~~~~~~~~~-~~~~~~~~~-------------- 153 (220)
T cd00352 109 YRELREELEARG--------------------YRFEGESDSEVILHLLERLGREGG-LFEAVEDAL-------------- 153 (220)
T ss_pred HHHHHHHHHHCC--------------------CeecCCCHHHHHHHHHHHHhccCC-HHHHHHHHH--------------
Confidence 998888775321 123679999999998876554433 677777654
Q ss_pred HHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCCCCceEEEEe-CCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000265 437 KALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLRPGRFYITH-SGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 437 rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGLRPlr~~~t~-d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
+.++|++++++.|+ +.+.+.||+.|+||+ |+... ++.+++|||.+++...+.+-+ .+|.||++
T Consensus 154 -----------~~~~G~~~~~~~d~~~~~l~~~rd~~G~~pL-~~~~~~~~~~~~aSe~~~~~~~~~~~~--~~l~~g~~ 219 (220)
T cd00352 154 -----------KRLDGPFAFALWDGKPDRLFAARDRFGIRPL-YYGITKDGGLVFASEPKALLALPFKGV--RRLPPGEL 219 (220)
T ss_pred -----------HhCCccEEEEEEECCCCEEEEEECCCCCCCe-EEEEeCCCeEEEEecHHHHhhcCcccE--EECCCCCC
Confidence 23699999999998 888889999999999 78887 889999999999975442233 37999997
Q ss_pred E
Q 000265 514 L 514 (1760)
Q Consensus 514 l 514 (1760)
+
T Consensus 220 ~ 220 (220)
T cd00352 220 L 220 (220)
T ss_pred C
Confidence 4
No 54
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.82 E-value=7.4e-20 Score=232.36 Aligned_cols=185 Identities=21% Similarity=0.206 Sum_probs=147.0
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce------eeeccccccC
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINT 356 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt 356 (1760)
+.++|++.+++.+ ++|+.|++.++++.. ++ +.+.+.++|+|+||||++.+++.++|||. .++|||||+|
T Consensus 29 ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~--~~--~~~~~~~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N 104 (607)
T TIGR01135 29 DSAGIAVVDEGKLFVRKAVGKVQELANKL--GE--KPLPGGVGIGHTRWATHGKPTEENAHPHTDEGGRIAVVHNGIIEN 104 (607)
T ss_pred ccceEEEEeCCEEEEEECCcCHHHHHhhh--hc--ccCCccEEEEEeeccCCCCCCccCCCCcCcCCCCEEEEEecccCC
Confidence 4578888776666 999999999997643 23 46789999999999999998899999996 4799999999
Q ss_pred hhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHH
Q 000265 357 LRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQR 436 (1760)
Q Consensus 357 ~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~ 436 (1760)
+..+++.+..+ +. .+.+.||||++.++++.+...|.++.+|+..++
T Consensus 105 ~~~Lr~~L~~~-------------------g~-~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~-------------- 150 (607)
T TIGR01135 105 YAELREELEAR-------------------GH-VFVSDTDTEVIAHLIEEYLREGGDLLEAVQKAL-------------- 150 (607)
T ss_pred HHHHHHHHHhC-------------------CC-ccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHH--------------
Confidence 98887765432 22 247899999999998865555668888888653
Q ss_pred HHHHHHHHhccCCCCCCcEEEecC---CceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000265 437 KALYEYFSALMEPWDGPALISFTD---GRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 437 rafYey~s~lmepwdGPa~iv~td---G~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
+.++|.|++++.| ++.+.++||+ ||| |++.+++.+++|||.++|.....+++ .|+|||+
T Consensus 151 -----------~~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL-~~~~~~~~~~~aSE~~al~~~~~~~~---~l~pg~~ 212 (607)
T TIGR01135 151 -----------KQLRGAYALAVLHADHPETLVAARSG---SPL-IVGLGDGENFVASDVTALLPVTRRVI---YLEDGDI 212 (607)
T ss_pred -----------HHhcCceEEEEEecCCCCEEEEEECC---Cce-EEEECCCeEEEEEChHHHHhhCCEEE---EeCCCeE
Confidence 4469999877754 3546668995 999 88888889999999999975556665 7999999
Q ss_pred EEEEcCCCEEe
Q 000265 514 LLVDFEKRIVV 524 (1760)
Q Consensus 514 l~vd~~~g~i~ 524 (1760)
+.++.++-+++
T Consensus 213 ~~~~~~~~~~~ 223 (607)
T TIGR01135 213 AILTRDGVRIY 223 (607)
T ss_pred EEEECCeeEEE
Confidence 99987654554
No 55
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.82 E-value=1.6e-19 Score=231.23 Aligned_cols=188 Identities=16% Similarity=0.155 Sum_probs=142.3
Q ss_pred CcEEEEEecCCe-----E-EEEccc----chhchhh---hhcccCC-CCCccccEEEEeecccCCCCCCCCCCCCce---
Q 000265 284 KDFYICSLSSRT-----V-VYKGQL----KPIQMKD---YYYADLG-NERFTSYMALIHSRFSTNTFPSWDRAQPMR--- 346 (1760)
Q Consensus 284 ~~~yI~SlS~~t-----i-vyKG~g----~~~qv~~---~y~~DL~-~~~~~s~~ai~H~RySTNT~psw~~AQPfr--- 346 (1760)
+.++|+..++++ + ++|++| ++.+++. . . +|. +..+.++++|||+||||++.+++.++|||.
T Consensus 36 dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~-~-~l~~~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~ 113 (680)
T PLN02981 36 DSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAE-T-DLNLDLVFENHAGIAHTRWATHGPPAPRNSHPQSSGP 113 (680)
T ss_pred ccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhccc-c-ccccccCCCCcEEEEEcccccCCCCCcCCCCCcccCC
Confidence 468999877652 5 999999 7777742 2 2 342 336789999999999999999999999995
Q ss_pred ----eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHc-----C-CCHHH
Q 000265 347 ----ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRA-----G-RSLPE 416 (1760)
Q Consensus 347 ----~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~-----g-~sl~e 416 (1760)
.++|||+|+|++..++.+. +.+.. +.+.||||++.++++...+. + .++++
T Consensus 114 ~~~ialvhNG~I~N~~eLr~~L~-------------------~~G~~-f~s~tDtEvi~~li~~~~~~~~~~~~~~~~~~ 173 (680)
T PLN02981 114 GNEFLVVHNGIITNYEVLKETLL-------------------RHGFT-FESDTDTEVIPKLAKFVFDKLNEEEGDVTFSQ 173 (680)
T ss_pred CCcEEEEECceEecHHHHHHHHH-------------------hCCCe-eccCCHHHHHHHHHHHHHHhcccccCCCCHHH
Confidence 3699999998887776553 33333 57899999999998865542 2 37888
Q ss_pred HHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecC---CceEEEccCCCCCCCceEEEEeC----------
Q 000265 417 AVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTD---GRYLGATLDRNGLRPGRFYITHS---------- 483 (1760)
Q Consensus 417 Ai~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~td---G~~igA~lDrnGLRPlr~~~t~d---------- 483 (1760)
|++.+ ++.++|.|++++.+ ...+.|+||+ ||| +++..+
T Consensus 174 a~~~~-------------------------~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL-~iG~~~~~~~~~~~~~ 224 (680)
T PLN02981 174 VVMEV-------------------------MRQLEGAYALIFKSPHYPNELVACKRG---SPL-LLGVKELPEEKNSSAV 224 (680)
T ss_pred HHHHH-------------------------HHhccCccceEEEecCCCCeEEEEecC---Cce-EEEecCcccccccccc
Confidence 88765 34579999877655 4555558996 999 677653
Q ss_pred --------------CEEEEEeccccccCCCCcEEEccccCCCcEEEEEcCCCEEec
Q 000265 484 --------------GRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVD 525 (1760)
Q Consensus 484 --------------~~~i~ASE~galdi~~~~vv~kgrl~PGeml~vd~~~g~i~~ 525 (1760)
+.|++|||+|+++.....++ .|+|||++.|+.++-++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~aSe~~al~~~~~~~~---~l~~gei~~i~~~~~~~~~ 277 (680)
T PLN02981 225 FTSEGFLTKNRDKPKEFFLASDASAVVEHTKRVL---VIEDNEVVHLKDGGVGIYK 277 (680)
T ss_pred cccccccccccccCCcEEEEeCHHHHHHhcCEEE---EECCCeEEEEECCeEEEEe
Confidence 36999999999987644443 8999999999976545554
No 56
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.81 E-value=1.6e-19 Score=229.21 Aligned_cols=186 Identities=19% Similarity=0.181 Sum_probs=147.8
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce------eeeccccccC
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINT 356 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt 356 (1760)
+..+|++.++..+ ++|+.|++.++++-+ ++ ..+.+.++|+|+||+|++.++..++|||. .++|||+|+|
T Consensus 30 d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~--~~--~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N 105 (604)
T PRK00331 30 DSAGIAVLDDGGLEVRKAVGKVANLEAKL--EE--EPLPGTTGIGHTRWATHGKPTERNAHPHTDCSGRIAVVHNGIIEN 105 (604)
T ss_pred CcceEEEEeCCEEEEEECCcCHHHHHhhh--cc--ccCCCcEEEEEEecCCCCCCccccCCccccCCCCEEEEEeEEEcC
Confidence 4567888776656 999999999987643 33 57889999999999999998899999997 3799999999
Q ss_pred hhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHH
Q 000265 357 LRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQR 436 (1760)
Q Consensus 357 ~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~ 436 (1760)
+...++.+.. .+.. +.+.||||++.++++...+.|.++.+|+..++
T Consensus 106 ~~~Lr~~l~~-------------------~g~~-~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~-------------- 151 (604)
T PRK00331 106 YAELKEELLA-------------------KGHV-FKSETDTEVIAHLIEEELKEGGDLLEAVRKAL-------------- 151 (604)
T ss_pred HHHHHHHHHh-------------------CCCc-ccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHH--------------
Confidence 8877765532 2222 46899999999998866566779999988663
Q ss_pred HHHHHHHHhccCCCCCCcEEEecC---CceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcE
Q 000265 437 KALYEYFSALMEPWDGPALISFTD---GRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMM 513 (1760)
Q Consensus 437 rafYey~s~lmepwdGPa~iv~td---G~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGem 513 (1760)
+.++|.|++++.| +..+.++||+ ||| |++.+++.+++|||.++|...+.++. .|+|||+
T Consensus 152 -----------~~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL-~~g~~~~~~~~aSE~~al~~~~~~~~---~l~pg~~ 213 (604)
T PRK00331 152 -----------KRLEGAYALAVIDKDEPDTIVAARNG---SPL-VIGLGEGENFLASDALALLPYTRRVI---YLEDGEI 213 (604)
T ss_pred -----------HhccCeeEEEEEecCCCCEEEEEECC---Cce-EEEEcCCeEEEEECHHHHHHhcCEEE---EECCCeE
Confidence 4569999888876 4556668996 999 88888889999999999976666664 8999999
Q ss_pred EEEEcCCCEEec
Q 000265 514 LLVDFEKRIVVD 525 (1760)
Q Consensus 514 l~vd~~~g~i~~ 525 (1760)
+.|+.++=++++
T Consensus 214 ~~i~~~~~~~~~ 225 (604)
T PRK00331 214 AVLTRDGVEIFD 225 (604)
T ss_pred EEEECCeEEEEe
Confidence 999865434443
No 57
>COG2218 FwdC Formylmethanofuran dehydrogenase subunit C [Energy production and conversion]
Probab=99.79 E-value=1.8e-19 Score=198.75 Aligned_cols=146 Identities=25% Similarity=0.411 Sum_probs=125.1
Q ss_pred cCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhh---hccCc
Q 000265 1421 LVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVA---LYGAT 1497 (1760)
Q Consensus 1421 ~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~---~yGat 1497 (1760)
..+|+.+.|. ++|++|.++|+.| +|++|+|+|||.||+|..|.||.|.|+||++.. +|+.. ..||+
T Consensus 80 G~~M~aGeI~--V~GdVg~~~G~~M-kgGkI~V~G~a~sw~G~Em~gge~~i~gna~dy--------Vg~~YRge~rgm~ 148 (264)
T COG2218 80 GERMSAGEII--VEGDVGMHVGAGM-KGGKIVVNGNADSWAGIEMKGGEIKIFGNAGDY--------VGCAYRGEWRGMS 148 (264)
T ss_pred cccccccEEE--Eeccccceeeeee-eccEEEEeCCCCCcccceeeCCeEEEeechHHh--------ccceeecccccCc
Confidence 3457778755 5899999999999 888999999999999999999999999995321 23211 35999
Q ss_pred ccEEEEecccccccccccCCcEEEEcC-CCccccccccCcEEEEeCCCCCcccCCCcceEEEEEcCCchhhcccCcccee
Q 000265 1498 SGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVD 1576 (1760)
Q Consensus 1498 gG~i~v~G~aGeR~gvr~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~~~~~~~~~~n~~~V~ 1576 (1760)
||+|.|+||||.-.|..|++|.|.|+| +|.++|-.|.||+|+|-|++++..|..|.+|+|.|.|..++|..-...+-|.
T Consensus 149 Gg~Iiv~Gna~~~iG~~M~~G~I~V~GdaG~~~Gi~~nGGtIII~Gd~~~~~G~eM~~G~IvV~G~~~~~Lp~fk~~g~~ 228 (264)
T COG2218 149 GGKIIVEGNAGNSIGELMRGGEIIVKGDAGKFTGIHMNGGTIIIEGDAGDFVGGEMKGGTIVVDGKAGEFLPGFKREGVE 228 (264)
T ss_pred CCEEEEecCcccchhhhccCcEEEEecccccceeeEecCCEEEEECCcCccccceeeCcEEEEccCHHHhCccceeeeeE
Confidence 999999999999999999999999999 6999999999999999999999999999999999999887775544334343
Q ss_pred e
Q 000265 1577 L 1577 (1760)
Q Consensus 1577 l 1577 (1760)
.
T Consensus 229 ~ 229 (264)
T COG2218 229 E 229 (264)
T ss_pred e
Confidence 3
No 58
>TIGR03122 one_C_dehyd_C formylmethanofuran dehydrogenase subunit C. Members of this largely archaeal protein family are subunit C of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdC) from molybdenum-containing (FmdC) forms of this enzyme.
Probab=99.78 E-value=5.2e-19 Score=201.30 Aligned_cols=127 Identities=27% Similarity=0.359 Sum_probs=116.1
Q ss_pred ccEEEEEecCc--cchhhhcCCCCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEe
Q 000265 1427 DTIHIKLTGSA--GQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFN 1504 (1760)
Q Consensus 1427 ~~i~i~~~G~a--Gq~~Gaf~~~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~ 1504 (1760)
+..+|.|+|+. =.++|+.|. .++|+|+||+++|+|.+|+||+|+|+|| +|+.++..|+||+|.|+
T Consensus 58 ~~~~l~i~g~~~r~~~IG~~m~-~g~I~v~G~~G~~~G~~M~gG~I~V~G~------------ag~~~G~~m~GG~I~V~ 124 (260)
T TIGR03122 58 DETRLVIDGDTSRVKRIGERMS-AGEIVVEGDVGMHVGAEMKGGKIVVNGN------------ADSWLGCEMKGGEIEVK 124 (260)
T ss_pred CceEEEEECCCccCCeeeCCCC-CCEEEEEccchhHHhccCCCCEEEEEec------------CchhhhCcccCCEEEEE
Confidence 34467888986 378999995 5599999999999999999999999999 78899999999999999
Q ss_pred ccccccccc-------ccCCcEEEEcC-CCccccccccCcEEEEeCCCCCcccCCCcceEEEEEcCCchh
Q 000265 1505 GMAAERFCV-------RNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKF 1566 (1760)
Q Consensus 1505 G~aGeR~gv-------r~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~~~~~~ 1566 (1760)
||||+++|. -|+||+|+|+| +|+++|++|.||+|+|+|++|.++|..|.||+|+|.+..+.+
T Consensus 125 GnAg~~~G~~~~G~~~gM~GG~I~V~GnaG~~~G~~M~gG~iiV~G~aG~~~G~~M~gG~ivV~G~~g~~ 194 (260)
T TIGR03122 125 GNAGDYVGSAYRGEWRGMSGGKIIVEGNAGDYLGERMRGGEILIEGNAGIFAGIHMNGGTIIIDGDVGRR 194 (260)
T ss_pred CCCcccccceeecccccccCCEEEEEechhHhhhhhccCcEEEEeeecccceeccccCCEEEEecccCcc
Confidence 999999995 39999999999 599999999999999999999999999999999999977654
No 59
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.76 E-value=1.3e-17 Score=196.13 Aligned_cols=268 Identities=15% Similarity=0.095 Sum_probs=176.8
Q ss_pred CCCCCCCCCCCCcccccc-----ceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhh
Q 000265 992 ADVKIPLEEVEPASEIVK-----RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSA 1066 (1760)
Q Consensus 992 ~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~ 1066 (1760)
..+.+++++||.++++.+ ||+++||. ...++.||++|++.|..+..=- .++|+.. +.
T Consensus 16 ~lp~~s~~dvdlst~~~~~~l~~P~~inAM~-----t~iN~~LA~~a~~~G~~~~~~k--~~~e~~~-----------~~ 77 (326)
T PRK05458 16 KCIVNSRSECDTSVTLGPRTFKLPVVPANMQ-----TIIDEKIAEWLAENGYFYIMHR--FDPEARI-----------PF 77 (326)
T ss_pred CCCCCCHHHcccceEECCcEecCcEEEeccc-----chhHHHHHHHHHHcCCEEEEec--CCHHHHH-----------HH
Confidence 467899999999999864 99999995 3888999999999988766533 2444321 22
Q ss_pred eeecccCC------cCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccC-CCCCCCCCCHHH
Q 000265 1067 IKQVASGR------FGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLIS-PPPHHDIYSIED 1139 (1760)
Q Consensus 1067 IkQvasgr------FGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lis-P~~hhDiySied 1139 (1760)
++++.+.. -|++++++..++++ .....|.+.+. ...|++ .+.
T Consensus 78 ~r~~~~~~l~v~~~vg~~~~~~~~~~~L----------------------------v~ag~~~d~i~iD~a~gh---~~~ 126 (326)
T PRK05458 78 IKDMHEQGLIASISVGVKDDEYDFVDQL----------------------------AAEGLTPEYITIDIAHGH---SDS 126 (326)
T ss_pred HHhccccccEEEEEecCCHHHHHHHHHH----------------------------HhcCCCCCEEEEECCCCc---hHH
Confidence 23333221 12233332222211 11111112221 111111 245
Q ss_pred HHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCC--HHHHHHHHHHHHH
Q 000265 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLP--WELGLAETHQTLV 1217 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP--~~~~Laev~q~L~ 1217 (1760)
+.++|.++|+.+|+.||++|.+. ....|..+.++|||+|.|++++|....... ....+.| .+.+++++.+.+
T Consensus 127 ~~e~I~~ir~~~p~~~vi~g~V~---t~e~a~~l~~aGad~i~vg~~~G~~~~t~~--~~g~~~~~w~l~ai~~~~~~~- 200 (326)
T PRK05458 127 VINMIQHIKKHLPETFVIAGNVG---TPEAVRELENAGADATKVGIGPGKVCITKI--KTGFGTGGWQLAALRWCAKAA- 200 (326)
T ss_pred HHHHHHHHHhhCCCCeEEEEecC---CHHHHHHHHHcCcCEEEECCCCCccccccc--ccCCCCCccHHHHHHHHHHHc-
Confidence 77889999999999999998653 356778899999999999887664422211 1233456 445677777652
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhh----------
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREK---------- 1287 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~---------- 1287 (1760)
++|||++|||+++.||+||+++||++|++|++++-+- ..|-.+...+..+.+.
T Consensus 201 ------~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~-----------espg~~~~~~g~~~k~y~g~~~~~~~ 263 (326)
T PRK05458 201 ------RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHE-----------ESPGKTVEIDGKLYKEYFGSASEFQK 263 (326)
T ss_pred ------CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCc-----------cCCCceeeecchhHHHhhCcHhhhcc
Confidence 4899999999999999999999999999999887432 2222222222221111
Q ss_pred ----cCCCHH-------HHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000265 1288 ----FAGEPE-------HVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1288 ----~~g~~e-------~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
+..+.+ ++.+++..+..+||..|..+|++++.||. +.+++..+.
T Consensus 264 ~~~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~-~~~~v~~~~ 318 (326)
T PRK05458 264 GEYKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIR-KVDYVIVKN 318 (326)
T ss_pred ccccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHh-cCCEEEEec
Confidence 112233 68999999999999999999999999996 588777653
No 60
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.76 E-value=1.6e-17 Score=194.74 Aligned_cols=266 Identities=15% Similarity=0.129 Sum_probs=177.5
Q ss_pred CCCCCCCCCCCCcccccc-----ceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhh
Q 000265 992 ADVKIPLEEVEPASEIVK-----RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSA 1066 (1760)
Q Consensus 992 ~~~~i~~~eVe~~t~i~~-----Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~ 1066 (1760)
..+.+++++||+++++.+ ||++++|. ...++.||++|++.|..+..-. .++|+.. +.
T Consensus 13 ~lp~~s~~dVdlst~~~~~~l~~P~~inAM~-----t~in~~LA~~a~~~G~~~i~hK--~~~E~~~-----------sf 74 (321)
T TIGR01306 13 KCIVNSRSECDTSVTLGKHKFKLPVVPANMQ-----TIIDEKLAEQLAENGYFYIMHR--FDEESRI-----------PF 74 (321)
T ss_pred CCCCCCHHHceeeEEECCcEecCcEEeeccc-----hhhhHHHHHHHHHcCCEEEEec--CCHHHHH-----------HH
Confidence 467888999999999864 99999995 3889999999999999877755 3555432 12
Q ss_pred eeecccCC------cCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCccccc---CCCCCCCCCCH
Q 000265 1067 IKQVASGR------FGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLI---SPPPHHDIYSI 1137 (1760)
Q Consensus 1067 IkQvasgr------FGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~li---sP~~hhDiySi 1137 (1760)
++++.+.. -|++++.+.....+ +.+| ...+.+ +..+| |
T Consensus 75 vrk~k~~~L~v~~SvG~t~e~~~r~~~l---v~a~-------------------------~~~d~i~~D~ahg~----s- 121 (321)
T TIGR01306 75 IKDMQERGLFASISVGVKACEYEFVTQL---AEEA-------------------------LTPEYITIDIAHGH----S- 121 (321)
T ss_pred HHhccccccEEEEEcCCCHHHHHHHHHH---HhcC-------------------------CCCCEEEEeCccCc----h-
Confidence 33332221 13333332221111 1111 001111 11222 1
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCC--HHHHHHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLP--WELGLAETHQT 1215 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP--~~~~Laev~q~ 1215 (1760)
+.+.+.|++||+.+|...|+++.+ +....|..+.++|||+|.|+.+.|++.+++.. ...|.| .+.++.++.++
T Consensus 122 ~~~~~~i~~i~~~~p~~~vi~GnV---~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~--~g~g~~~~~l~ai~ev~~a 196 (321)
T TIGR01306 122 NSVINMIKHIKTHLPDSFVIAGNV---GTPEAVRELENAGADATKVGIGPGKVCITKIK--TGFGTGGWQLAALRWCAKA 196 (321)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecC---CCHHHHHHHHHcCcCEEEECCCCCccccceee--eccCCCchHHHHHHHHHHh
Confidence 346677999999886544555533 45678889999999999999777888877754 223443 56788888875
Q ss_pred HHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCC-----
Q 000265 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAG----- 1290 (1760)
Q Consensus 1216 L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g----- 1290 (1760)
. ++|||+||||+++.||+||+++|||+|++|+.+-- |. .+|-.+...+..+.|.|.|
T Consensus 197 ~-------~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag---~~--------Espg~~~~~~g~~~k~y~g~~~~~ 258 (321)
T TIGR01306 197 A-------RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAG---HE--------ESPGETVEKDGKLYKEYFGSASEF 258 (321)
T ss_pred c-------CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcC---cc--------cCCCceEeeCCeEHhhhcCchhhh
Confidence 2 58999999999999999999999999999987542 22 2333322222211111110
Q ss_pred ----------------CHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000265 1291 ----------------EPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1291 ----------------~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
....|.+++..+...||..|..+|+++|.||. +.+++..+.
T Consensus 259 ~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~-~~~~~~~~~ 315 (321)
T TIGR01306 259 QKGEHKNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLR-TVDYVIVKN 315 (321)
T ss_pred cccccccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHh-hCCEEEEec
Confidence 01238889999999999999999999999994 788887653
No 61
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.73 E-value=1.1e-16 Score=189.72 Aligned_cols=291 Identities=17% Similarity=0.184 Sum_probs=177.9
Q ss_pred cccccccccCCCCCCCCCCCCcccccc------ceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCC
Q 000265 983 LRGLLKFKEADVKIPLEEVEPASEIVK------RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLS 1056 (1760)
Q Consensus 983 ~r~ll~~~~~~~~i~~~eVe~~t~i~~------Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~ 1056 (1760)
+-+++ +.+.+..++.++||.++.|.+ ||+.+||...+- ..||+++.++|+...... .++++++.
T Consensus 4 ~ddv~-l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt~-----~~ma~ava~~GglGvi~~-~~~~~~~~--- 73 (325)
T cd00381 4 FDDVL-LVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVTE-----SEMAIAMARLGGIGVIHR-NMSIEEQA--- 73 (325)
T ss_pred cccEE-EeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCCc-----HHHHHHHHHCCCEEEEeC-CCCHHHHH---
Confidence 34444 444556777889998888753 999999986542 259999999999877653 34555442
Q ss_pred CCCCchhhhheeecccCCcCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCC
Q 000265 1057 DGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYS 1136 (1760)
Q Consensus 1057 ~g~~~~~~s~IkQvasgrFGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiyS 1136 (1760)
..++++- +++.+....-.+.+ ..+.+..+. ..|+..|.-...|. +
T Consensus 74 --------~~i~~vk-~~l~v~~~~~~~~~----------------------~~~~~~~l~--eagv~~I~vd~~~G--~ 118 (325)
T cd00381 74 --------EEVRKVK-GRLLVGAAVGTRED----------------------DKERAEALV--EAGVDVIVIDSAHG--H 118 (325)
T ss_pred --------HHHHHhc-cCceEEEecCCChh----------------------HHHHHHHHH--hcCCCEEEEECCCC--C
Confidence 1222221 22222110000000 001111111 12333221000110 1
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
.+.+.+.|+++|+..|++||++..+ .....|..+.++|||+|+|.+..|..+..+ ...++|.|...+|+++.+++
T Consensus 119 ~~~~~~~i~~ik~~~p~v~Vi~G~v---~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~--~~~g~g~p~~~~i~~v~~~~ 193 (325)
T cd00381 119 SVYVIEMIKFIKKKYPNVDVIAGNV---VTAEAARDLIDAGADGVKVGIGPGSICTTR--IVTGVGVPQATAVADVAAAA 193 (325)
T ss_pred cHHHHHHHHHHHHHCCCceEEECCC---CCHHHHHHHHhcCCCEEEECCCCCcCcccc--eeCCCCCCHHHHHHHHHHHH
Confidence 2467788999999887788877433 334667889999999999965433323222 23567899999999999887
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccc---cccccCCCCCcccccChhhH--------
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMM---RKCHKNTCPVGIATQDPVLR-------- 1285 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~---r~ch~~~cP~giatqdp~Lr-------- 1285 (1760)
... ++|||++|||+++.||+||+++||++|++||.|+.+..|..- +.-+.-..-.|.++.....+
T Consensus 194 ~~~----~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~ 269 (325)
T cd00381 194 RDY----GVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFG 269 (325)
T ss_pred hhc----CCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccccccc
Confidence 543 589999999999999999999999999999999886544310 00000011111111111110
Q ss_pred ----hhcCCC-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCce
Q 000265 1286 ----EKFAGE-------PEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDM 1327 (1760)
Q Consensus 1286 ----~~~~g~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dL 1327 (1760)
.+...+ +-.|.+++..+...||..|..+|+++|.||..+..+
T Consensus 270 ~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~~ 322 (325)
T cd00381 270 EEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKARF 322 (325)
T ss_pred cccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCeE
Confidence 001111 234889999999999999999999999999665543
No 62
>cd00981 arch_gltB Archaeal-type gltB domain. This domain shares sequence similarity with a region of unknown function found in the large subunit of glutamate synthase, which is encoded by gltB and found in most bacteria and eukaryotes. It is predicted to be homologous to the C-terminal domain of glutamate synthase based upon sequence similarity coupled with genome organization data, showing that this domain is found in a gene cluster with other domains of Glts, which are annotated. This domain is found primarily in archaea, but is also present in a few bacteria, likely as a result of lateral gene transfer.
Probab=99.73 E-value=7.8e-18 Score=189.39 Aligned_cols=121 Identities=21% Similarity=0.251 Sum_probs=113.4
Q ss_pred EEEEecCccchhhhcCC-CCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEecccc
Q 000265 1430 HIKLTGSAGQSVGAFLC-PGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAA 1508 (1760)
Q Consensus 1430 ~i~~~G~aGq~~Gaf~~-~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aG 1508 (1760)
.|.|+++.||.+....+ +.++|+|+|++++++|..|+||+|+|+|+ +|+.++.+|+||+|+|+|+||
T Consensus 27 ~~~i~n~~g~~~ig~gl~~~~~I~v~G~aG~~~G~~m~gg~I~v~Gn------------a~d~~G~~m~GG~I~V~G~aG 94 (232)
T cd00981 27 EIVLDNVLGQRYIGDGLPGNVRINIYGVPGNDLGAFMSGPTIIVYGN------------AQDDVGNTMNDGKIVIHGSAG 94 (232)
T ss_pred eEEEECCCCceecccCCCCCEEEEEEecCcHHHHhhcCCCEEEEEec------------chhhhhccccCcEEEEECChH
Confidence 36678999988765544 78899999999999999999999999999 789999999999999999999
Q ss_pred cccccccCCcEEEEcC-CCcccccccc-----CcEEEEeCCCCCcccCCCcceEEEEEcC
Q 000265 1509 ERFCVRNSGARAVVEG-VGDHGCEYMT-----GGTVVVLGKTGRNFAAGMSGGIAYVLDV 1562 (1760)
Q Consensus 1509 eR~gvr~sG~~iVV~G-~Gd~~~eyMt-----gG~ivVlG~~G~~~gagM~gG~iyv~~~ 1562 (1760)
+.+|.-|+||+|+|+| +|+++|.+|. ||+|||.|++|.++|..|.||+|+|.|.
T Consensus 95 ~~~g~~m~GG~i~V~G~aG~r~G~~m~~~~~~gg~ivV~G~aGd~~ge~M~gG~ivV~G~ 154 (232)
T cd00981 95 DVLGYAMRGGKIFIRGNAGYRVGIHMKEYKDKVPVLVIGGTAGDFLGEYMAGGVIIVLGL 154 (232)
T ss_pred HHHHhhCcCcEEEEEecchhhhhhhcccccCCCCEEEEEeccCccccccccCCEEEEECC
Confidence 9999999999999999 5999999999 9999999999999999999999999997
No 63
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.72 E-value=4.6e-17 Score=208.40 Aligned_cols=209 Identities=13% Similarity=0.086 Sum_probs=150.4
Q ss_pred CcEEEEEecC---------------CeE-EEEcccchhchhhh-hccc--CC-----CCCccccEEEEeecccCCCCCCC
Q 000265 284 KDFYICSLSS---------------RTV-VYKGQLKPIQMKDY-YYAD--LG-----NERFTSYMALIHSRFSTNTFPSW 339 (1760)
Q Consensus 284 ~~~yI~SlS~---------------~ti-vyKG~g~~~qv~~~-y~~D--L~-----~~~~~s~~ai~H~RySTNT~psw 339 (1760)
+.++|++..+ +.+ ++|++|++.+|.+. |. + |. +..+.++++|+|+||||.+.+++
T Consensus 36 dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~~-~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~ 114 (670)
T PTZ00394 36 DSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVFS-EAVAATLPPMDATTSHHVGIAHTRWATHGGVCE 114 (670)
T ss_pred ccceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHhc-chhhhhccccccCCCCCEEEEEeeceecCCCCc
Confidence 4689998411 335 99999999886442 22 1 11 12578999999999999999999
Q ss_pred CCCCCcee------eeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHH-cCC
Q 000265 340 DRAQPMRI------LGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVR-AGR 412 (1760)
Q Consensus 340 ~~AQPfr~------laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~-~g~ 412 (1760)
.++|||.. ++|||+|+|+...++.+.. .+.. |.+.||||++.++++.+.. .|.
T Consensus 115 ~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~-------------------~g~~-f~s~tDtEvi~~li~~~~~~~g~ 174 (670)
T PTZ00394 115 RNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKE-------------------EGYH-FSSDTDTEVISVLSEYLYTRKGI 174 (670)
T ss_pred CCCCCcCCCCCCEEEEECeeEecHHHHHHHHHH-------------------cCCE-ecCCChHHHHHHHHHHHHHhcCC
Confidence 99999964 6999999998877765543 3333 4789999999999986665 354
Q ss_pred -CHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEec---CCceEEEccCCCCCCCceEEEEeC-----
Q 000265 413 -SLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFT---DGRYLGATLDRNGLRPGRFYITHS----- 483 (1760)
Q Consensus 413 -sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~t---dG~~igA~lDrnGLRPlr~~~t~d----- 483 (1760)
++.+|+..++ +.++|.|++++. ++..+.|+||+ ||| +++..+
T Consensus 175 ~~~~~a~~~~~-------------------------~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL-~iG~~~~~~~~ 225 (670)
T PTZ00394 175 HNFADLALEVS-------------------------RMVEGSYALLVKSVYFPGQLAASRKG---SPL-MVGIRRTDDRG 225 (670)
T ss_pred CCHHHHHHHHH-------------------------HHccCceEEEEEecCCCCEEEEEEcC---Cce-EEEeccccccc
Confidence 8888888663 456999876653 24445558999 999 788765
Q ss_pred ----------------CEEEEEeccccccCCCCcEEEccccCCCcEEEEEcCCCEEechH-----HH---------HHHH
Q 000265 484 ----------------GRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDE-----AL---------KQQY 533 (1760)
Q Consensus 484 ----------------~~~i~ASE~galdi~~~~vv~kgrl~PGeml~vd~~~g~i~~~~-----ei---------k~~~ 533 (1760)
+.+++|||..++----.+|+ -|++|+++.+..+.=+|++.. .+ ...-
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~aSd~~a~~~~t~~~~---~l~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (670)
T PTZ00394 226 CVMKLQTYDLTDLSGPLEVFFSSDVNSFAEYTREVV---FLEDGDIAHYCDGALRFYNAAERQRSIVKREVQHLDAKPEG 302 (670)
T ss_pred cccccccccccccCCCCcEEEEeChHHHHHhhceEE---EecCCeEEEEECCEEEEEeCCCCcccccccceEEEeCCHhH
Confidence 47999999999854445676 599999999875544555421 11 1334
Q ss_pred HhcCCcHHHHhh
Q 000265 534 SLARPYGEWLQR 545 (1760)
Q Consensus 534 a~~~py~~wl~~ 545 (1760)
+.+-+|..|+.+
T Consensus 303 ~~k~~y~hfMlk 314 (670)
T PTZ00394 303 LSKGNYPHFMLK 314 (670)
T ss_pred hhcCCCchHHHH
Confidence 455677777654
No 64
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.72 E-value=1.2e-16 Score=192.33 Aligned_cols=310 Identities=16% Similarity=0.181 Sum_probs=193.6
Q ss_pred cccccccccccCCCCCCCCCCCCcccccc------ceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCc
Q 000265 981 CNLRGLLKFKEADVKIPLEEVEPASEIVK------RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEP 1054 (1760)
Q Consensus 981 ~~~r~ll~~~~~~~~i~~~eVe~~t~i~~------Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~ 1054 (1760)
-|+.++| +.+....+..++|+..+.+.+ |++.++|.+.+ . ..||.|++++|++...+ ..+++|++..
T Consensus 10 ltfdDvl-l~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt-~----~~lA~AvA~aGGlGvI~-~~~~~e~l~~ 82 (404)
T PRK06843 10 LTFDDVS-LIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT-E----SQMAIAIAKEGGIGIIH-KNMSIEAQRK 82 (404)
T ss_pred cCccceE-EccCCCccCHHhccccchhhhccCCCCCEecCCCCCCC-C----HHHHHHHHHCCCEEEec-CCCCHHHHHH
Confidence 3555555 444455666788888877742 99999997543 2 26999999999998887 4577776531
Q ss_pred CCCCCCchhhhheeecccC-CcCCChh------hhcCc-hhHH-------H--h--hhccCCCCCCCCCC-Cccc--h--
Q 000265 1055 LSDGSMNPKRSAIKQVASG-RFGVSSY------YLTNA-DELQ-------I--K--MAQGAKPGEGGELP-GHKV--I-- 1110 (1760)
Q Consensus 1055 ~~~g~~~~~~s~IkQvasg-rFGVt~~------~L~~a-~~iq-------I--K--iaQGAKpGeGG~Lp-g~KV--~-- 1110 (1760)
....+++..++ .+..+-+ .+..+ +.++ | + ..+..+-.. |+|. +..+ .
T Consensus 83 --------eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~-~~l~v~aavg~~~~ 153 (404)
T PRK06843 83 --------EIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLN-NKLRVGAAVSIDID 153 (404)
T ss_pred --------HHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhh-cCeEEEEEEeCCHH
Confidence 11223332211 1111100 00000 0000 0 0 000011000 1111 0001 1
Q ss_pred --HHHHHHhCCCCcccccC-CCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCC
Q 000265 1111 --GDIAVTRNSTAGVGLIS-PPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHD 1187 (1760)
Q Consensus 1111 --~~IA~~R~~~pG~~lis-P~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~ 1187 (1760)
+.+..+. ..|+++|- ...|++ .+.+.++|.++|+.+|+.+|+++.++. ...|..+.++|||+|.+ |.+
T Consensus 154 ~~~~v~~lv--~aGvDvI~iD~a~g~---~~~~~~~v~~ik~~~p~~~vi~g~V~T---~e~a~~l~~aGaD~I~v-G~g 224 (404)
T PRK06843 154 TIERVEELV--KAHVDILVIDSAHGH---STRIIELVKKIKTKYPNLDLIAGNIVT---KEAALDLISVGADCLKV-GIG 224 (404)
T ss_pred HHHHHHHHH--hcCCCEEEEECCCCC---ChhHHHHHHHHHhhCCCCcEEEEecCC---HHHHHHHHHcCCCEEEE-CCC
Confidence 1222222 24665543 111221 245778899999999999999997654 36677899999999998 654
Q ss_pred CCC-CCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcccccc
Q 000265 1188 GGT-GASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMR 1266 (1760)
Q Consensus 1188 GGT-Gas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r 1266 (1760)
.|+ +.++ ....+|.|.+.++.++.+.+... .+|||+||||+++.||+||++|||++|++|+++.-+
T Consensus 225 ~Gs~c~tr--~~~g~g~p~ltai~~v~~~~~~~----~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt------- 291 (404)
T PRK06843 225 PGSICTTR--IVAGVGVPQITAICDVYEVCKNT----NICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT------- 291 (404)
T ss_pred CCcCCcce--eecCCCCChHHHHHHHHHHHhhc----CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeee-------
Confidence 443 4443 23467889999999998876543 489999999999999999999999999999986653
Q ss_pred ccccCCCCCcccccChhhHhhcC-----------------------------CC-------HHHHHHHHHHHHHHHHHHH
Q 000265 1267 KCHKNTCPVGIATQDPVLREKFA-----------------------------GE-------PEHVINFFFMLAEELREIM 1310 (1760)
Q Consensus 1267 ~ch~~~cP~giatqdp~Lr~~~~-----------------------------g~-------~e~V~n~~~~l~~ELr~~M 1310 (1760)
..||..+...+....|.|. .+ .-.|.+++..+...||..|
T Consensus 292 ----~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v~~~~~~l~gglrs~m 367 (404)
T PRK06843 292 ----KESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGM 367 (404)
T ss_pred ----ecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCCCccEEEecCCCCHHHHHHHHHHHHHHHh
Confidence 3456665544332211110 00 0128899999999999999
Q ss_pred HhcCCCChhhhcCCCceeeccc
Q 000265 1311 SQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1311 a~lG~~si~ELigr~dLl~~~~ 1332 (1760)
..+|.++|.||..+..+...+.
T Consensus 368 ~y~Ga~~i~el~~~a~fv~~t~ 389 (404)
T PRK06843 368 GYLGAATISDLKINSKFVKISH 389 (404)
T ss_pred hccCCCcHHHHHhcCeEEEEch
Confidence 9999999999988887776653
No 65
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.70 E-value=1.4e-16 Score=182.91 Aligned_cols=182 Identities=23% Similarity=0.265 Sum_probs=131.4
Q ss_pred CcEEEEEec--CCeE-EEEccc-chhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee----eecccccc
Q 000265 284 KDFYICSLS--SRTV-VYKGQL-KPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI----LGHNGEIN 355 (1760)
Q Consensus 284 ~~~yI~SlS--~~ti-vyKG~g-~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~----laHNGEIn 355 (1760)
+.++|+..+ ...+ +||+.+ ..++.. + . ++ .+.+++.++|+|+||+|.+..+..++|||.. ++|||+|.
T Consensus 42 DgwGia~~~~~~~~~~~~k~~~~~~~~~~-~-~-~~-~~~~~~~~~l~H~R~At~G~~~~~n~hPf~~~~~~~~HNG~i~ 117 (257)
T cd01908 42 DGWGIGWYEGKGGRPFRYRSPLPAWSDIN-L-E-SL-ARPIKSPLVLAHVRAATVGPVSLENCHPFTRGRWLFAHNGQLD 117 (257)
T ss_pred CCcEEEEecCCCCeeeeeCCCCCCcCCcc-h-H-Hh-hccccccEEEEEEecCCCCCCccccCCCcccCCEEEEeCCccC
Confidence 457888877 4555 999994 455543 2 2 23 2577899999999999999888999999964 79999999
Q ss_pred ChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCC-C----HHHHHHHcCccccccCC
Q 000265 356 TLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGR-S----LPEAVMMMIPEAWQNDK 430 (1760)
Q Consensus 356 t~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~-s----l~eAi~~~iPeaw~~~~ 430 (1760)
++...+.. +...++..+.+.||||++.+++......+. + +.+|+...+.
T Consensus 118 n~~~l~~~-------------------l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~~~~~~~al~~~~~------- 171 (257)
T cd01908 118 GFRLLRRR-------------------LLRLLPRLPVGTTDSELAFALLLSRLLERDPLDPAELLDAILQTLR------- 171 (257)
T ss_pred CcchhhHH-------------------HHhcCccCCccCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-------
Confidence 87655443 333332234789999999888764433222 1 5555554431
Q ss_pred CCCHHHHHHHHHHHhccCCC--CCCcEEEecCCceEEEccCCCCCCCceEEEEe------------------CCEEEEEe
Q 000265 431 NMDPQRKALYEYFSALMEPW--DGPALISFTDGRYLGATLDRNGLRPGRFYITH------------------SGRVIMAS 490 (1760)
Q Consensus 431 ~m~~e~rafYey~s~lmepw--dGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~------------------d~~~i~AS 490 (1760)
. +..| .|.+.++++||..+.|++|+. .||+ |+... ++.++|||
T Consensus 172 --------------~-l~~~~~~~~~n~~~~dg~~l~a~r~~~-~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaS 234 (257)
T cd01908 172 --------------E-LAALAPPGRLNLLLSDGEYLIATRYAS-APSL-YYLTRRAPFGCARLLFRSVTTPNDDGVVVAS 234 (257)
T ss_pred --------------H-HHHhCcCeEEEEEEECCCEEEEEEeCC-CCce-EEEeccccccccccccccccCCCCCEEEEEe
Confidence 1 1122 356788899999999999999 8999 77765 47899999
Q ss_pred ccccccCCCCcEEEccccCCCcEEEEEc
Q 000265 491 EVGVVDIPPEDVLRKGRLNPGMMLLVDF 518 (1760)
Q Consensus 491 E~galdi~~~~vv~kgrl~PGeml~vd~ 518 (1760)
|.++.+. .|+ +|+||+++.|+.
T Consensus 235 E~l~~~~----~w~--~v~~ge~~~i~~ 256 (257)
T cd01908 235 EPLTDDE----GWT--EVPPGELVVVSE 256 (257)
T ss_pred CCCCCCC----Cce--EeCCCEEEEEeC
Confidence 9998764 343 799999999975
No 66
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.69 E-value=2.1e-16 Score=189.40 Aligned_cols=174 Identities=21% Similarity=0.274 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCC-CCCCccccccccCCCHHHHHHHHHH
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGG-TGASRWTGIKNAGLPWELGLAETHQ 1214 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GG-TGas~~~si~~~GlP~~~~Laev~q 1214 (1760)
+++++.++++ +. +.||+++-+. ....|..+.++|||+|.| |.++| .+.++ ....+|+|.+.++.++.+
T Consensus 175 ~~~~i~~~ik---~~--~ipVIaG~V~---t~e~A~~l~~aGAD~V~V-G~G~Gs~~~t~--~~~g~g~p~~~ai~~~~~ 243 (368)
T PRK08649 175 EPLNLKEFIY---EL--DVPVIVGGCV---TYTTALHLMRTGAAGVLV-GIGPGAACTSR--GVLGIGVPMATAIADVAA 243 (368)
T ss_pred CHHHHHHHHH---HC--CCCEEEeCCC---CHHHHHHHHHcCCCEEEE-CCCCCcCCCCc--ccCCCCcCHHHHHHHHHH
Confidence 3555544443 32 7899885433 245677888999999988 44343 23221 234678999999999876
Q ss_pred HHH----hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCC
Q 000265 1215 TLV----ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAG 1290 (1760)
Q Consensus 1215 ~L~----~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g 1290 (1760)
+.+ +.+.+ +||||+||||+++.|++||++|||++|++||+|+.+..|.. ..+.+|.++.++.+.+-..+
T Consensus 244 a~~~~l~~~~~~-~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg------~~~~~gm~s~~~~~~eg~~~ 316 (368)
T PRK08649 244 ARRDYLDETGGR-YVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPG------RGWHWGMAAPHPSLPRGTRI 316 (368)
T ss_pred HHHHhhhhhcCC-CCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCC------cccccCcccCCCcCCCceEE
Confidence 533 32322 59999999999999999999999999999999998776542 33667777666544322110
Q ss_pred ---CHHHHHHHHH----------HHHHHHHHHHHhcCCCChhhhcCCCcee
Q 000265 1291 ---EPEHVINFFF----------MLAEELREIMSQLGFRTITEMIGRSDML 1328 (1760)
Q Consensus 1291 ---~~e~V~n~~~----------~l~~ELr~~Ma~lG~~si~ELigr~dLl 1328 (1760)
-.-.|...+. ++...||..|..+|+++|.|| .+.+++
T Consensus 317 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~-~~~~~~ 366 (368)
T PRK08649 317 KVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEF-QKVEVV 366 (368)
T ss_pred eCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHH-hhcCeE
Confidence 0123556655 888999999999999999998 566654
No 67
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.69 E-value=1.7e-16 Score=181.75 Aligned_cols=190 Identities=19% Similarity=0.192 Sum_probs=128.4
Q ss_pred CcEEEEEecCC---e-EEEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCC-CCCCCCCCcee----eeccccc
Q 000265 284 KDFYICSLSSR---T-VVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTF-PSWDRAQPMRI----LGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~---t-ivyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~-psw~~AQPfr~----laHNGEI 354 (1760)
+.++|+...++ . .+||..+-+..=..+ . .|. ..+++.++|+|+||+|.+. .++.|+|||.. ++|||+|
T Consensus 43 DGwGia~~~~~~~~~~~~~k~~~pa~~d~~l-~-~l~-~~~~s~~~i~HvR~AT~G~~~~~~N~hPf~~g~~~~aHNG~i 119 (251)
T TIGR03442 43 DGFGVGWYDSGKDTVPFRYRSTQPIWNDINF-A-SLA-RYVESGCVLAAVRSATVGMAIDESACAPFSDGRWLFSHNGFV 119 (251)
T ss_pred CcceEEEecCCCCCCceEEeCCCccccChhH-H-HHH-hhcccceEEEEeeeCCCCCCcchhcCCCCCcCCEEEEeCCcc
Confidence 45788888765 3 499999877542222 2 232 3478999999999999997 56799999973 6999999
Q ss_pred cChhhHH-HHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcC--CCHHHHHHHcCccccccCCC
Q 000265 355 NTLRGNV-NWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAG--RSLPEAVMMMIPEAWQNDKN 431 (1760)
Q Consensus 355 nt~~gN~-n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g--~sl~eAi~~~iPeaw~~~~~ 431 (1760)
.++...+ +.++ + +|+..+...+.+.||||.+.+++....... .++++|+..++..
T Consensus 120 ~n~~~~~r~~L~--~-------------~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~~~~~~~ai~~~~~~------- 177 (251)
T TIGR03442 120 DNFRQTLYRPLR--D-------------RLPDIFYLAIEGSTDSAHLFALLLNRLLENDPRALEEALAEVLLI------- 177 (251)
T ss_pred CCchhhhhHHHH--h-------------cCChhhccCCCCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH-------
Confidence 9875321 2222 1 122222112478999998877665333221 4667776655321
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCC
Q 000265 432 MDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPG 511 (1760)
Q Consensus 432 m~~e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PG 511 (1760)
.... ..++ ...+.++++||..+.|+||++ || |+++.++.+++|||. + ..+..|+ +|+||
T Consensus 178 -------l~~~---~~~~-~~~~n~~~sdg~~l~a~R~~~---~L-~~~~~~~~~vvASEp--l--~~~~~W~--~v~pg 236 (251)
T TIGR03442 178 -------LFSA---AAAP-RVRLNLLLTDGSRLVATRWAD---TL-YWLKDPEGVIVASEP--Y--DDDPGWQ--DVPDR 236 (251)
T ss_pred -------HHHH---hhCc-ccceEEEEEcCCEEEEEEeCC---eE-EEEEcCCEEEEEeCC--c--CCCCCce--EeCCC
Confidence 0111 1111 233789999999999999998 99 788877899999998 3 3333664 89999
Q ss_pred cEEEEEcC
Q 000265 512 MMLLVDFE 519 (1760)
Q Consensus 512 eml~vd~~ 519 (1760)
|||+|+.+
T Consensus 237 e~v~i~~~ 244 (251)
T TIGR03442 237 HLLSVSED 244 (251)
T ss_pred eEEEEECC
Confidence 99999764
No 68
>COG2218 FwdC Formylmethanofuran dehydrogenase subunit C [Energy production and conversion]
Probab=99.68 E-value=6.2e-17 Score=178.96 Aligned_cols=151 Identities=29% Similarity=0.387 Sum_probs=125.3
Q ss_pred EEEecccccCcchhhhhhHHHH-----HhhccCCCCCccEEEEEecCccchhhhcCCCCcEEEEEecCCchhh-------
Q 000265 1395 YIETPVCNVNRAVGTMLSHEVT-----KRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVG------- 1462 (1760)
Q Consensus 1395 ~~~~~i~n~dR~vG~~Ls~~i~-----~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~DyvG------- 1462 (1760)
.++.++.++.|+-..|-+|+|. -.|=..+|..++|.| +|+|-..+|.-| +|.+|++.|||.||||
T Consensus 68 ~i~gD~~~~k~iG~~M~aGeI~V~GdVg~~~G~~MkgGkI~V--~G~a~sw~G~Em-~gge~~i~gna~dyVg~~YRge~ 144 (264)
T COG2218 68 SIDGDVSRVKRIGERMSAGEIIVEGDVGMHVGAGMKGGKIVV--NGNADSWAGIEM-KGGEIKIFGNAGDYVGCAYRGEW 144 (264)
T ss_pred EEcCchhhhccccccccccEEEEeccccceeeeeeeccEEEE--eCCCCCccccee-eCCeEEEeechHHhccceeeccc
Confidence 4444555555543333334431 122234677888666 699999899777 7889999999999999
Q ss_pred cCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEecccccccccccCCcEEEEcC-CCccccccccCcEEEEe
Q 000265 1463 KGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVL 1541 (1760)
Q Consensus 1463 kgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G-~Gd~~~eyMtgG~ivVl 1541 (1760)
+||+||+|+|+|| +||..+-.|++|+|+|.||||..+|++|+||+|+|+| ++++.|--|.+|+|||.
T Consensus 145 rgm~Gg~Iiv~Gn------------a~~~iG~~M~~G~I~V~GdaG~~~Gi~~nGGtIII~Gd~~~~~G~eM~~G~IvV~ 212 (264)
T COG2218 145 RGMSGGKIIVEGN------------AGNSIGELMRGGEIIVKGDAGKFTGIHMNGGTIIIEGDAGDFVGGEMKGGTIVVD 212 (264)
T ss_pred ccCcCCEEEEecC------------cccchhhhccCcEEEEecccccceeeEecCCEEEEECCcCccccceeeCcEEEEc
Confidence 7899999999999 7888899999999999999999999999999999999 69999999999999999
Q ss_pred CCCCCcccCCCcceEEEEE
Q 000265 1542 GKTGRNFAAGMSGGIAYVL 1560 (1760)
Q Consensus 1542 G~~G~~~gagM~gG~iyv~ 1560 (1760)
|+++..+++-=..|+++-+
T Consensus 213 G~~~~~Lp~fk~~g~~~~~ 231 (264)
T COG2218 213 GKAGEFLPGFKREGVEEAR 231 (264)
T ss_pred cCHHHhCccceeeeeEecc
Confidence 9999999998889988854
No 69
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.66 E-value=5.2e-16 Score=161.92 Aligned_cols=116 Identities=26% Similarity=0.324 Sum_probs=88.9
Q ss_pred CccccEEEEeecccCCCCCCCCCCCCc--e----eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCC
Q 000265 319 RFTSYMALIHSRFSTNTFPSWDRAQPM--R----ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDV 392 (1760)
Q Consensus 319 ~~~s~~ai~H~RySTNT~psw~~AQPf--r----~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~ 392 (1760)
.+.+.++|+|+||+|++.+.+.++||| . +++|||+|.|+...++.+.. .+ .-+.
T Consensus 9 ~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~-------------------~g-~~~~ 68 (133)
T PF13522_consen 9 WLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGE-------------------KG-HPFE 68 (133)
T ss_pred hcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHH-------------------CC-Cccc
Confidence 456889999999999999988888999 3 27999999998877665432 11 2247
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEec---CCceEEEccC
Q 000265 393 SSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFT---DGRYLGATLD 469 (1760)
Q Consensus 393 ~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~t---dG~~igA~lD 469 (1760)
+.||||+|.+++ .+.| .+++. .++|.+++++. .++++. ++|
T Consensus 69 ~~tDSEii~~li---~~~g---~~~l~-----------------------------~l~G~~a~~~~~~~~~~l~~-~rd 112 (133)
T PF13522_consen 69 SDTDSEIIAALI---HRWG---EEALE-----------------------------RLDGAFAFAVYDKTPNKLFL-ARD 112 (133)
T ss_pred CCCHHHHHHHHH---HHHH---HHHHH-----------------------------HhcCceEEEEEEcCCCEEEE-EEc
Confidence 899999998876 2333 34433 35998766653 355555 599
Q ss_pred CCCCCCceEEEEeCCEEEEEec
Q 000265 470 RNGLRPGRFYITHSGRVIMASE 491 (1760)
Q Consensus 470 rnGLRPlr~~~t~d~~~i~ASE 491 (1760)
|.|.||| |++..++.+++|||
T Consensus 113 ~~g~~PL-~~~~~~~~~~~ASE 133 (133)
T PF13522_consen 113 PLGIRPL-YYGRDGDGYVFASE 133 (133)
T ss_pred CCCCCCE-EEEEcCCEEEEEeC
Confidence 9999999 88888999999999
No 70
>cd00504 GXGXG GXGXG domain. This domain of unknown function is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS), in subunit C of tungsten formylmethanofuran dehydrogenase (FwdC) and in subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC). It is also found in a primarily archeal group of proteins predicted to encode part of the large subunit of GltS. It is characterized by a repeated GXXGXXXG motif. GltS is a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the transfer of ammonia and electrons among three distinct active centers that carry out L-Gln hydrolysis, conversion of 2-oxoglutarate into L-Glu, and electron uptake from a donor. These catalytic sites occur in other domains within the protein or or encoded by separate genes, and are not present in the domain in this CD. FwdC and FmdC are reversible ion pumps that catalyze the formylation and deformylation of met
Probab=99.64 E-value=3e-16 Score=166.62 Aligned_cols=108 Identities=25% Similarity=0.347 Sum_probs=101.4
Q ss_pred CCcEEEEEecCCchhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEe-------cccccccccccCCcE
Q 000265 1447 PGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFN-------GMAAERFCVRNSGAR 1519 (1760)
Q Consensus 1447 ~G~~i~v~G~A~DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~-------G~aGeR~gvr~sG~~ 1519 (1760)
...+|+++|++.+++|..|+||+|+|+|+ +|+.++-+|+||+|+|. |+||..++.-|+||+
T Consensus 20 ~~~~i~i~G~~g~~~G~~m~gg~I~v~G~------------agd~~G~~m~GG~I~V~g~~~~~~G~ag~~~~~gm~gG~ 87 (149)
T cd00504 20 DTVEIIINGSAGQSFGAFMAGGTITVEGN------------ANDYVGKGMSGGEIVIHPPAGDENGIAGNVALYGATGGK 87 (149)
T ss_pred CcEEEEEEccCchHhhhhcCCCEEEEEEc------------CchhhhccccCCEEEEecCCcccceeehHhhhhhccCCE
Confidence 35799999999999999999999999999 79999999999999999 777888888899999
Q ss_pred EEEcC-CCccccccccCcEEEEeCCCCCcccCCCcceEEEEEcCCchh
Q 000265 1520 AVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKF 1566 (1760)
Q Consensus 1520 iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~~~~~~ 1566 (1760)
++|+| +|+++|++|.||+|+|.|++|.++|..|.+|+|+|.+..+.+
T Consensus 88 i~V~G~AG~~~G~~m~GG~ivV~G~~g~~~g~~M~gG~ivV~G~~g~~ 135 (149)
T cd00504 88 IFVRGNAGERFGVRMSGGTIVVEGVGDDFGGEYMTGGTIVVLGDAGRN 135 (149)
T ss_pred EEEEecchhhhhhhccCcEEEEEeecCccccccccCCEEEEeCCCCcC
Confidence 99999 599999999999999999999999999999999999987754
No 71
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.63 E-value=6.5e-15 Score=176.34 Aligned_cols=168 Identities=20% Similarity=0.254 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHH-
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQT- 1215 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~- 1215 (1760)
++++.++++.+ +.||+++.+ .....|..+.++|||+|.+ |+ ||++.++ ....+++|+..+++++..+
T Consensus 177 p~~l~~~i~~~-----~IPVI~G~V---~t~e~A~~~~~aGaDgV~~-G~-gg~~~~~--~~lg~~~p~~~ai~d~~~a~ 244 (369)
T TIGR01304 177 PLNLKEFIGEL-----DVPVIAGGV---NDYTTALHLMRTGAAGVIV-GP-GGANTTR--LVLGIEVPMATAIADVAAAR 244 (369)
T ss_pred HHHHHHHHHHC-----CCCEEEeCC---CCHHHHHHHHHcCCCEEEE-CC-CCCcccc--cccCCCCCHHHHHHHHHHHH
Confidence 56666655443 789988543 2346678888999999983 33 4444432 2345789998898888754
Q ss_pred ---HHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhh--------
Q 000265 1216 ---LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL-------- 1284 (1760)
Q Consensus 1216 ---L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~L-------- 1284 (1760)
+.+.+.| .|+||+||||+|+.||+||++||||+|++||+|+.+..|.. ..|++|.++.+|.|
T Consensus 245 ~~~~~e~g~r-~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg------~~~~w~~~~~~~~~~~~~~~~~ 317 (369)
T TIGR01304 245 RDYLDETGGR-YVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPG------RGYFWPAAAAHPRLPRGVVTES 317 (369)
T ss_pred HHHHHhcCCC-CceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCC------CCCccchhhcCccCCccccccc
Confidence 3343333 59999999999999999999999999999999999887642 34555555555444
Q ss_pred ---------HhhcCC---CHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCcee
Q 000265 1285 ---------REKFAG---EPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDML 1328 (1760)
Q Consensus 1285 ---------r~~~~g---~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl 1328 (1760)
.+-+.| .+++..| +...||..|+.+|+++++|+ .|.++.
T Consensus 318 ~~~~~~~~~~~~~~gp~~~~~~~~n----~~g~~~~~~~~~g~~~~~~~-~~~~~~ 368 (369)
T TIGR01304 318 GTVGEAPTLEEILHGPSTLPDGVEN----FEGGLKRAMAKCGYTDLKEF-QKVSLT 368 (369)
T ss_pred cccCCCCcHHHHeeCCCCCCcchhh----hHHHHHHHHHHcCchhhhhh-hhccee
Confidence 333322 1344444 55688999999999999998 777654
No 72
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.61 E-value=1.5e-14 Score=179.69 Aligned_cols=182 Identities=16% Similarity=0.110 Sum_probs=135.1
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000265 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
.+.|.+||+.+|+++|+++-+.+ ...|..+.++|||+|.|..+.|+++.++. ..++|.|.+.++.++.+.+.+.
T Consensus 270 ~~~i~~ik~~~~~~~v~aG~V~t---~~~a~~~~~aGad~I~vg~g~Gs~~~t~~--~~~~g~p~~~ai~~~~~~~~~~- 343 (495)
T PTZ00314 270 IDMIKKLKSNYPHVDIIAGNVVT---ADQAKNLIDAGADGLRIGMGSGSICITQE--VCAVGRPQASAVYHVARYARER- 343 (495)
T ss_pred HHHHHHHHhhCCCceEEECCcCC---HHHHHHHHHcCCCEEEECCcCCcccccch--hccCCCChHHHHHHHHHHHhhc-
Confidence 56799999998999998875432 35677899999999999766677766553 4589999999999999987654
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcccc--------ccccccCCCCCcccccChhhHhhcC---
Q 000265 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIM--------MRKCHKNTCPVGIATQDPVLREKFA--- 1289 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~--------~r~ch~~~cP~giatqdp~Lr~~~~--- 1289 (1760)
.++||+||||+|+.||+||+++||++|++|++|.-+..|.. .-|+..+-++.+..++.....+.|.
T Consensus 344 ---~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~ 420 (495)
T PTZ00314 344 ---GVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENE 420 (495)
T ss_pred ---CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhccccccccccccc
Confidence 48999999999999999999999999999998765443321 1233344444443332211111111
Q ss_pred -----CC-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcC-----CCceeecc
Q 000265 1290 -----GE-------PEHVINFFFMLAEELREIMSQLGFRTITEMIG-----RSDMLEVD 1331 (1760)
Q Consensus 1290 -----g~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELig-----r~dLl~~~ 1331 (1760)
.+ ...|.+++..+..+||..|..+|.+||.||.. +..+...+
T Consensus 421 ~~~~~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~~~~~~~~~f~~~t 479 (495)
T PTZ00314 421 TIKVAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHEKLYSGQVRFERRS 479 (495)
T ss_pred ccccCCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHhhcccCceEEEEEC
Confidence 11 13489999999999999999999999999966 66666554
No 73
>PF01493 GXGXG: GXGXG motif; InterPro: IPR002489 Glutamate synthase (GltS) is a complex iron-sulphur flavoprotein that catalyses the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the bacterial, yeast and plant pathways for ammonia assimilation []. GltS is a multifunctional enzyme that functions through three distinct active centres carrying out multiple reaction steps: L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. The active centres are synchronised to avoid the wasteful consumption of L-glutamine []. There are three classes of GltS, which share many functional properties: bacterial NADPH-dependent GltS, ferredoxin-dependent GltS from photosynthetic cells, and NAD(P)H-dependent GltS from yeast, fungi and lower animals. The dimeric alpha subunits each consist of four domains: N-terminal amidotransferase domain, the central domain, the FMN binding domain and the C-terminal domain. The C-terminal domain forms a right-handed beta-helix that comprises seven helical turns []. Each helical turn has a sharp bend that is associated with a repeated sequence motif consisting of G-XX-G-XXX-G. This domain does not contain any residues directly involved in catalysis, but has a crucial structural role. This domain is also found in proteins such as subunit C of formylmethanofuran dehydrogenase, which catalyses the first step in methane formation from carbon dioxide in methanogenic archaea. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (FwdC) and a molybdenum-containing isoenzyme (FmdC). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.59 E-value=2e-15 Score=167.66 Aligned_cols=109 Identities=29% Similarity=0.447 Sum_probs=84.4
Q ss_pred ccEEEEEecCccchhhhcCCCCcEEEEEecCCc--------------hhhcCCCCceEEEeCCCCCCCCCCccccchhhh
Q 000265 1427 DTIHIKLTGSAGQSVGAFLCPGILLELEGDSND--------------YVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVA 1492 (1760)
Q Consensus 1427 ~~i~i~~~G~aGq~~Gaf~~~G~~i~v~G~A~D--------------yvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~ 1492 (1760)
..++|.|+|++|+++|..| .|++|+|+|+++| +++.||+||+|+|+|+ +|+.+
T Consensus 52 ~g~~I~V~G~ag~~~G~~m-~GG~I~V~Gn~~~~~~~~~~~~~~~G~~~~~Gm~gG~i~V~G~------------aG~r~ 118 (202)
T PF01493_consen 52 GGLKIVVEGDAGDYVGKGM-SGGTIIVKGNAGDDDGGGIVVSGSAGDYLGYGMRGGTIFVQGN------------AGSRA 118 (202)
T ss_dssp TTEEEEEEEEE-STTTTT--ECCEEEEE--TT---SS-GGGSEEC-SSTTTT--CEEEEESSE------------E-TTT
T ss_pred CCeEEEEEecccchhHhhC-CCCEEEEECCcccccccceEeeeeeeccccccccceEEEEEec------------cccce
Confidence 4567888999999999999 8899999999998 4679999999999999 78888
Q ss_pred hccCcccEEEEecccccccccccCCcEEEEcC-CCccccccccCcEEEEeCCCCCcc
Q 000265 1493 LYGATSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNF 1548 (1760)
Q Consensus 1493 ~yGatgG~i~v~G~aGeR~gvr~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~ 1548 (1760)
+..|++|+|.|.|+||+.+|..|.||+|||.| +|+++|..|+||+|+|.|++...+
T Consensus 119 g~~m~gg~iiV~G~~g~~~g~~M~gG~ivV~G~~G~~~g~~m~gG~I~v~g~~~~~l 175 (202)
T PF01493_consen 119 GIRMSGGTIIVEGNAGDFAGEYMTGGTIVVLGDAGDNAGAGMKGGTIYVRGPVEDSL 175 (202)
T ss_dssp TTT-CCEEEEESEB--SSTTTT-EEEEEEESS-B-SSBTTT--CCEEEEE-TTS-TH
T ss_pred eeecceeEEEEeccccCCeeecccCCEEEEecCCCcccCCCCCCeEEEEcCCCcccc
Confidence 88999999999999999999999999999999 599999999999999999998433
No 74
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.58 E-value=2.2e-14 Score=167.63 Aligned_cols=280 Identities=15% Similarity=0.144 Sum_probs=181.1
Q ss_pred cccccccccccCCCCCCC-CCCCCccccc---------c-ceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCc
Q 000265 981 CNLRGLLKFKEADVKIPL-EEVEPASEIV---------K-RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQP 1049 (1760)
Q Consensus 981 ~~~r~ll~~~~~~~~i~~-~eVe~~t~i~---------~-Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~ 1049 (1760)
.++.++| +++.+..+.- +|||+.+++. + |++-+.|-. -....+|+++++.|.+...--- .++
T Consensus 8 l~f~DVl-l~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdt-----v~~~~mA~~la~~g~~~~iHk~-~~~ 80 (343)
T TIGR01305 8 LDFKDVL-LRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDT-----VGTFEMAAALSQHSIFTAIHKH-YSV 80 (343)
T ss_pred CCccceE-EecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCc-----ccCHHHHHHHHHCCCeEEEeeC-CCH
Confidence 3555666 5544444444 7888887765 2 999999962 2334699999999998665321 233
Q ss_pred cccCcCCCCCCchhhhheeecccC-------CcCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCc
Q 000265 1050 SRMEPLSDGSMNPKRSAIKQVASG-------RFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAG 1122 (1760)
Q Consensus 1050 e~~~~~~~g~~~~~~s~IkQvasg-------rFGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG 1122 (1760)
|+.. ..++.+.+. --|++++++..+ ..+....++
T Consensus 81 e~~~-----------~~v~~~~~~~~~~~~vsvG~~~~d~er~----------------------------~~L~~a~~~ 121 (343)
T TIGR01305 81 DEWK-----------AFATNSSPDCLQNVAVSSGSSDNDLEKM----------------------------TSILEAVPQ 121 (343)
T ss_pred HHHH-----------HHHHhhcccccceEEEEeccCHHHHHHH----------------------------HHHHhcCCC
Confidence 3221 112221111 113333333222 222222334
Q ss_pred cccc---CCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEE-ccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccc
Q 000265 1123 VGLI---SPPPHHDIYSIEDLAQLIYDLKNANPGARISVKL-VSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGI 1198 (1760)
Q Consensus 1123 ~~li---sP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKl-v~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si 1198 (1760)
.+.| +..+|. +-..+.|.++|+.+|+.+ ++|. + .....|..+.++|||+|.|+=..|..+.++. .
T Consensus 122 ~d~iviD~AhGhs-----~~~i~~ik~ir~~~p~~~-viaGNV---~T~e~a~~Li~aGAD~ikVgiGpGSicttR~--~ 190 (343)
T TIGR01305 122 LKFICLDVANGYS-----EHFVEFVKLVREAFPEHT-IMAGNV---VTGEMVEELILSGADIVKVGIGPGSVCTTRT--K 190 (343)
T ss_pred CCEEEEECCCCcH-----HHHHHHHHHHHhhCCCCe-EEEecc---cCHHHHHHHHHcCCCEEEEcccCCCcccCce--e
Confidence 4333 222322 345677999999998754 4554 3 3346778899999999999744454455442 4
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCccc
Q 000265 1199 KNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIA 1278 (1760)
Q Consensus 1199 ~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~gia 1278 (1760)
..+|.|.+.+|+++.++.... +++||+||||+++.||+||+++||++|++|.. .| |+ ..+|-.+.
T Consensus 191 ~Gvg~pqltAv~~~a~aa~~~----~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~l--lA-G~--------~Espg~~i 255 (343)
T TIGR01305 191 TGVGYPQLSAVIECADAAHGL----KGHIISDGGCTCPGDVAKAFGAGADFVMLGGM--FA-GH--------TESGGEVI 255 (343)
T ss_pred CCCCcCHHHHHHHHHHHhccC----CCeEEEcCCcCchhHHHHHHHcCCCEEEECHh--hh-Cc--------CcCcceeE
Confidence 677889999999999986432 58999999999999999999999999999953 22 22 23454544
Q ss_pred ccChhhHhhcCC---------------------C-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeec
Q 000265 1279 TQDPVLREKFAG---------------------E-------PEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEV 1330 (1760)
Q Consensus 1279 tqdp~Lr~~~~g---------------------~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~ 1330 (1760)
..+....|.|-| + .-.|.+++..+...||..|..+|.++|.||..++.+++.
T Consensus 256 ~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~v 335 (343)
T TIGR01305 256 ERNGRKFKLFYGMSSDTAMKKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKRATFIRV 335 (343)
T ss_pred eECCEEEEEEeccchHHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhCCEEEEE
Confidence 444332222211 0 113888999999999999999999999999888998877
Q ss_pred cc
Q 000265 1331 DK 1332 (1760)
Q Consensus 1331 ~~ 1332 (1760)
+.
T Consensus 336 t~ 337 (343)
T TIGR01305 336 TQ 337 (343)
T ss_pred Cc
Confidence 53
No 75
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.53 E-value=1.1e-13 Score=161.86 Aligned_cols=280 Identities=16% Similarity=0.129 Sum_probs=186.2
Q ss_pred ccccccccccCCCCCCC-CCCCCccccc----------cceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCcc
Q 000265 982 NLRGLLKFKEADVKIPL-EEVEPASEIV----------KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPS 1050 (1760)
Q Consensus 982 ~~r~ll~~~~~~~~i~~-~eVe~~t~i~----------~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e 1050 (1760)
++.++| +++.+..+.- +|||...++. -|++.+.|-- -....+|+++++.|.+...-- -.++|
T Consensus 10 ~f~DVl-l~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdT-----V~~~~mA~~la~~g~~~~iHk-~~~~e 82 (346)
T PRK05096 10 GFKDVL-IRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDT-----VGTFEMAKALASFDILTAVHK-HYSVE 82 (346)
T ss_pred CceeEE-EecCcCccccHHHceecceeeeecccccccCCceEecCCCc-----cccHHHHHHHHHCCCeEEEec-CCCHH
Confidence 455555 4544444443 5777766664 3999999963 223469999999999866532 12333
Q ss_pred ccCcCCCCCCchhhhheeecccCC-------cCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcc
Q 000265 1051 RMEPLSDGSMNPKRSAIKQVASGR-------FGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGV 1123 (1760)
Q Consensus 1051 ~~~~~~~g~~~~~~s~IkQvasgr-------FGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~ 1123 (1760)
+.. ..++.+.+.. -|++++++... ..+....+|.
T Consensus 83 ~~~-----------~fv~~~~~~~~~~~~vavG~~~~d~er~----------------------------~~L~~~~~g~ 123 (346)
T PRK05096 83 EWA-----------AFVNNSSADVLKHVMVSTGTSDADFEKT----------------------------KQILALSPAL 123 (346)
T ss_pred HHH-----------HHHHhccccccceEEEEecCCHHHHHHH----------------------------HHHHhcCCCC
Confidence 221 1122221111 13333333222 2222223444
Q ss_pred ccc---CCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccc
Q 000265 1124 GLI---SPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKN 1200 (1760)
Q Consensus 1124 ~li---sP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~ 1200 (1760)
+.| +..+| | +...+.|.++|+.+|+.+|+.--| .....|..+.++|||+|.|-=..|.-+.++. ...
T Consensus 124 D~iviD~AhGh----s-~~~i~~ik~ik~~~P~~~vIaGNV---~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~--vtG 193 (346)
T PRK05096 124 NFICIDVANGY----S-EHFVQFVAKAREAWPDKTICAGNV---VTGEMVEELILSGADIVKVGIGPGSVCTTRV--KTG 193 (346)
T ss_pred CEEEEECCCCc----H-HHHHHHHHHHHHhCCCCcEEEecc---cCHHHHHHHHHcCCCEEEEcccCCccccCcc--ccc
Confidence 433 22222 2 346778999999999999988765 3456778899999999998444444454442 357
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCccccc
Q 000265 1201 AGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQ 1280 (1760)
Q Consensus 1201 ~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatq 1280 (1760)
+|.|...++.++.++.... .+|||+||||++..||+||+++|||+|++|+.|-- ...+|-.+...
T Consensus 194 vG~PQltAV~~~a~~a~~~----gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAG-----------t~EsPGe~~~~ 258 (346)
T PRK05096 194 VGYPQLSAVIECADAAHGL----GGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAG-----------HEESGGEIVEE 258 (346)
T ss_pred cChhHHHHHHHHHHHHHHc----CCCEEecCCcccccHHHHHHHcCCCEEEeChhhcC-----------cccCCCcEEEE
Confidence 7999999999999988765 47999999999999999999999999999996432 23566666555
Q ss_pred ChhhHhhcCC------------C------H----------HHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000265 1281 DPVLREKFAG------------E------P----------EHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1281 dp~Lr~~~~g------------~------~----------e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
+....|.|-| . + -.|.+++..+...||..|..+|.++|.||..++++++.+.
T Consensus 259 ~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~a~fv~vt~ 338 (346)
T PRK05096 259 NGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQE 338 (346)
T ss_pred CCEEEEEEeccccHHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhCCeEEEECh
Confidence 5433322211 0 1 1388899999999999999999999999988899887753
No 76
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.52 E-value=2.7e-14 Score=169.36 Aligned_cols=184 Identities=18% Similarity=0.196 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCC-CCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGG-TGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GG-TGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
+.+.+.|++||+.+|+.||++--|. ....|..+.++|||+|.| |-+.| .+.++ ....+|.|...++.++.++.
T Consensus 134 ~~~~~~ik~ik~~~~~~~viaGNV~---T~e~a~~L~~aGad~vkV-GiGpGsiCtTr--~v~GvG~PQ~tAv~~~a~~a 207 (352)
T PF00478_consen 134 EHVIDMIKKIKKKFPDVPVIAGNVV---TYEGAKDLIDAGADAVKV-GIGPGSICTTR--EVTGVGVPQLTAVYECAEAA 207 (352)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEEE----SHHHHHHHHHTT-SEEEE-SSSSSTTBHHH--HHHSBSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEecccC---CHHHHHHHHHcCCCEEEE-eccCCcccccc--cccccCCcHHHHHHHHHHHh
Confidence 4466789999999999999988753 457788899999999999 44222 22222 24578999999999999998
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccc---cCCCCCcccccCh-----hhHhhc
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCH---KNTCPVGIATQDP-----VLREKF 1288 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch---~~~cP~giatqdp-----~Lr~~~ 1288 (1760)
... .||||+||||+++.||+|||++|||+|++|+.|--+-.+-+--.-. .-.+..|-++..- ....+|
T Consensus 208 ~~~----~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~~ry 283 (352)
T PF00478_consen 208 RDY----GVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSGDRY 283 (352)
T ss_dssp HCT----TSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTGCTC
T ss_pred hhc----cCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccchhc
Confidence 764 5999999999999999999999999999999755433221100000 0001112222110 001122
Q ss_pred ---------CCC-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeecc
Q 000265 1289 ---------AGE-------PEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVD 1331 (1760)
Q Consensus 1289 ---------~g~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~ 1331 (1760)
..+ .-.|.+++..|...||..|..+|.++|.||..+..+++.+
T Consensus 284 ~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~~fvrvs 342 (352)
T PF00478_consen 284 FQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKARFVRVS 342 (352)
T ss_dssp TSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHHEEEEES
T ss_pred cccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCCeEEEEC
Confidence 111 2348899999999999999999999999997777666665
No 77
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.48 E-value=1.4e-13 Score=163.71 Aligned_cols=203 Identities=21% Similarity=0.249 Sum_probs=124.1
Q ss_pred cceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeecccCCcCCChhhhcCch--
Q 000265 1009 KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNAD-- 1086 (1760)
Q Consensus 1009 ~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgrFGVt~~~L~~a~-- 1086 (1760)
.|++.++|++ .-++ .||.|++++|++...|.++.+++++. .....+++..+.+|||+........
T Consensus 12 ~PIiqapM~~-is~~----~LaaAVs~aGglG~l~~~~~~~~~l~--------~~i~~~~~~t~~pfgvnl~~~~~~~~~ 78 (330)
T PF03060_consen 12 YPIIQAPMGG-ISTP----ELAAAVSNAGGLGFLGAGGLTPEQLR--------EEIRKIRALTDKPFGVNLFLPPPDPAD 78 (330)
T ss_dssp SSEEE---TT-TSSH----HHHHHHHHTTSBEEEECTTSSHHHHH--------HHHHHHHHH-SS-EEEEEETTSTTHHH
T ss_pred cCEEcCCCCC-CChH----HHHHHHHhCCCEeeccccccChHHHH--------HHHHHHHhhccccccccccccCcccch
Confidence 4999999986 3345 59999999999999998888888763 2345677888889998865432211
Q ss_pred h------------HHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCC-CCCCCCCCHHHHHHHHHHHHHhCCC
Q 000265 1087 E------------LQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISP-PPHHDIYSIEDLAQLIYDLKNANPG 1153 (1760)
Q Consensus 1087 ~------------iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP-~~hhDiySiedLaqlI~~Lk~~~p~ 1153 (1760)
. +++.+..+.. ..+.+...-.. +..+++- .+.+ ..+.|..++.. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~v~~~~G~p-------~~~~i~~l~~~--g 136 (330)
T PF03060_consen 79 EEDAWPKELGNAVLELCIEEGVP-----------FEEQLDVALEA--KPDVVSFGFGLP-------PPEVIERLHAA--G 136 (330)
T ss_dssp H-HHHHHHTHHHHHHHHHHTT-S-----------HHHHHHHHHHS----SEEEEESSSC--------HHHHHHHHHT--T
T ss_pred hhhhhhhhhHHHHHHHHHHhCcc-----------ccccccccccc--ceEEEEeecccc-------hHHHHHHHHHc--C
Confidence 1 1222221111 11222111111 1112211 0111 13457778776 6
Q ss_pred CceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Q 000265 1154 ARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQL 1233 (1760)
Q Consensus 1154 ~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGI 1233 (1760)
..|+.+. +-...|..+.++|+|+|+++|.++|+|... +.+ ++...++++.+.+ ++|||++|||
T Consensus 137 i~v~~~v----~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~-----~~~-~~~~L~~~v~~~~-------~iPViaAGGI 199 (330)
T PF03060_consen 137 IKVIPQV----TSVREARKAAKAGADAIVAQGPEAGGHRGF-----EVG-STFSLLPQVRDAV-------DIPVIAAGGI 199 (330)
T ss_dssp -EEEEEE----SSHHHHHHHHHTT-SEEEEE-TTSSEE--------SSG--HHHHHHHHHHH--------SS-EEEESS-
T ss_pred Ccccccc----CCHHHHHHhhhcCCCEEEEeccccCCCCCc-----ccc-ceeeHHHHHhhhc-------CCcEEEecCc
Confidence 6666664 445678889999999999999999987751 112 5777788888774 4999999999
Q ss_pred CCHHHHHHHHHcCCCccccchhHHHHhccc
Q 000265 1234 KTGRDVAIAALLGAEEFGFSTAPLITLGCI 1263 (1760)
Q Consensus 1234 rtG~DVaKAlaLGAdaVg~GTa~L~Algc~ 1263 (1760)
.+|++++.|++|||++|++||+|+.+-.|.
T Consensus 200 ~dg~~iaaal~lGA~gV~~GTrFl~t~Es~ 229 (330)
T PF03060_consen 200 ADGRGIAAALALGADGVQMGTRFLATEESG 229 (330)
T ss_dssp -SHHHHHHHHHCT-SEEEESHHHHTSTTS-
T ss_pred CCHHHHHHHHHcCCCEeecCCeEEeccccc
Confidence 999999999999999999999999977664
No 78
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.48 E-value=7.7e-13 Score=164.79 Aligned_cols=164 Identities=15% Similarity=0.101 Sum_probs=117.7
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000265 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
.+.|.++|+.+|+.+|+++-+.. ...|..+.++|||+|.|++|.|..+.++. ....|.|...++..+.+.+..
T Consensus 277 ~~~i~~ik~~~p~~~vi~g~v~t---~e~a~~a~~aGaD~i~vg~g~G~~~~t~~--~~~~g~~~~~~i~~~~~~~~~-- 349 (505)
T PLN02274 277 LEMIKYIKKTYPELDVIGGNVVT---MYQAQNLIQAGVDGLRVGMGSGSICTTQE--VCAVGRGQATAVYKVASIAAQ-- 349 (505)
T ss_pred HHHHHHHHHhCCCCcEEEecCCC---HHHHHHHHHcCcCEEEECCCCCccccCcc--ccccCCCcccHHHHHHHHHHh--
Confidence 46799999999999999986543 35678899999999999877665444432 123455654455555554433
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhh----------------
Q 000265 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL---------------- 1284 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~L---------------- 1284 (1760)
.++|||+||||+++.||+||+++||++|++||+|..+..|. -.....+...
T Consensus 350 --~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp-----------~~~~~~~g~~~k~yrgmgs~~a~~~~ 416 (505)
T PLN02274 350 --HGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAP-----------GEYFYQDGVRVKKYRGMGSLEAMTKG 416 (505)
T ss_pred --cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCC-----------cceeeeCCeEEEEEeccchHHHHhcc
Confidence 25999999999999999999999999999999988765442 2222111110
Q ss_pred ----------HhhcCCC-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCC
Q 000265 1285 ----------REKFAGE-------PEHVINFFFMLAEELREIMSQLGFRTITEMIGR 1324 (1760)
Q Consensus 1285 ----------r~~~~g~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr 1324 (1760)
++.++.+ .-.|.+++..+...||..|..+|.++|.||..+
T Consensus 417 ~~~ry~~~~~~~~v~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 417 SDQRYLGDTAKLKIAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred ccccccccCcccccCCceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 0111111 134788999999999999999999999999655
No 79
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.46 E-value=3.5e-13 Score=151.36 Aligned_cols=135 Identities=30% Similarity=0.329 Sum_probs=101.1
Q ss_pred cEEEEeecccCCCCCCCCCCCCcee------eeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCCh
Q 000265 323 YMALIHSRFSTNTFPSWDRAQPMRI------LGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSD 396 (1760)
Q Consensus 323 ~~ai~H~RySTNT~psw~~AQPfr~------laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SD 396 (1760)
.++|+|+|++|++.. .++|||.. ++|||||+|+...++.+. ..+. .+.+.||
T Consensus 41 ~~~lgh~rl~~~~~~--~~~qP~~~~~~~~~~~~nG~i~N~~~L~~~l~-------------------~~~~-~~~~~sD 98 (220)
T cd00712 41 GVALGHRRLSIIDLS--GGAQPMVSEDGRLVLVFNGEIYNYRELRAELE-------------------ALGH-RFRTHSD 98 (220)
T ss_pred CEEEEEEeeeecCcc--cCCCCeEeCCCCEEEEEEEEEeCHHHHHHHHH-------------------hcCC-cCCCCCh
Confidence 579999999999875 89999953 699999998877666442 2222 2468999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCCC
Q 000265 397 SGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLR 474 (1760)
Q Consensus 397 Se~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGLR 474 (1760)
+|++.++++ +.| ++++ +.++|+|++++.|. +.+.++|||.|.|
T Consensus 99 ~e~l~~~~~---~~g---~~~~-----------------------------~~l~G~fa~vi~d~~~~~l~~~rD~~G~~ 143 (220)
T cd00712 99 TEVILHLYE---EWG---EDCL-----------------------------ERLNGMFAFALWDKRKRRLFLARDRFGIK 143 (220)
T ss_pred HHHHHHHHH---HHh---HHHH-----------------------------HHhhheEEEEEEECCCCEEEEEECCCCCE
Confidence 999877654 333 2222 33599998887654 5566689999999
Q ss_pred CceEEEEeCCEEEEEeccccccCCCC---------------------------cEEEccccCCCcEEEEEc
Q 000265 475 PGRFYITHSGRVIMASEVGVVDIPPE---------------------------DVLRKGRLNPGMMLLVDF 518 (1760)
Q Consensus 475 Plr~~~t~d~~~i~ASE~galdi~~~---------------------------~vv~kgrl~PGeml~vd~ 518 (1760)
|| |+...++.+++|||..+|...+. .|. +|.||.++.++.
T Consensus 144 pL-y~~~~~~~~~~aSe~~~l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~---~l~pG~~l~~~~ 210 (220)
T cd00712 144 PL-YYGRDGGGLAFASELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIR---KLPPGHYLTVDP 210 (220)
T ss_pred ee-EEEEECCEEEEEcchHHHHhcCCCCCCcCHHHHHHHHhcCCCCCCCchhcCce---EECCceEEEEEC
Confidence 99 88888889999999998832111 343 799999999986
No 80
>cd00982 gltB_C gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the transfer of ammonia and electrons among three distinct active centers that carry out L-Gln hydrolysis, conversion of 2-oxoglutarate into L-Glu, and electron uptake from a donor. These catalytic sites appear to occur in other domains within the protein, and not the domain in this CD. This particular domain has no known function, but it likely has a structural role as it interacts with the amidotransferase and FMN-binding domains of gltS.
Probab=99.45 E-value=3.2e-13 Score=153.27 Aligned_cols=146 Identities=22% Similarity=0.305 Sum_probs=112.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHcCC---cEEEEecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcC
Q 000265 1369 DHGLDMALDQKLIKLSKAALEKAL---PVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFL 1445 (1760)
Q Consensus 1369 ~~~~~~~ld~~~~~~~~~~l~~~~---~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~ 1445 (1760)
|..+...|..++.+. ..+++. ++.+.+.=. ...++|+.+ +. -++|+++|+|++++|..|
T Consensus 30 dRsvGt~ls~~i~~~---~g~~gl~~~~i~i~~~G~-aGq~~Gaf~-------------~~-G~~i~v~G~A~dyvGk~m 91 (251)
T cd00982 30 DRAVGTMLSGEIAKR---YGEEGLPEDTIKIKFEGS-AGQSFGAFL-------------AK-GVTLELEGDANDYVGKGL 91 (251)
T ss_pred ccchhhHHHHHHHHH---hcccCCCCCcEEEEEEcC-CCceeeeec-------------CC-CCEEEEEecccccccccc
Confidence 444555565555443 333333 344444333 334467763 22 245777999999999999
Q ss_pred CCCcEEEEEecCC------------chhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEeccccccccc
Q 000265 1446 CPGILLELEGDSN------------DYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCV 1513 (1760)
Q Consensus 1446 ~~G~~i~v~G~A~------------DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gv 1513 (1760)
.|++|+|.|+++ ++++.||+||+|.|+|++ |+-++-.|+||.+.|.| +|+++|.
T Consensus 92 -~GG~IvV~g~~~~~~~~~~~~i~Gn~~~~GmtgG~i~i~G~A------------G~R~gvr~sG~~iVV~G-~Gd~~~E 157 (251)
T cd00982 92 -SGGRIVVRPPKDATFKPEENIIIGNVCLYGATSGEAFIRGRA------------GERFAVRNSGATAVVEG-VGDHGCE 157 (251)
T ss_pred -cCCEEEEECCCcccccccccceehhhhhhccCCCEEEEeccc------------cceeeeccCCCEEEEEe-cccceec
Confidence 899999999965 588999999999999995 55555579999999999 8999999
Q ss_pred ccCCcEEEEcC-CCccccccccCcEEEEeCCCCC
Q 000265 1514 RNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGR 1546 (1760)
Q Consensus 1514 r~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~ 1546 (1760)
+|.||+|||.| +|.+.|.-|+||+++|.|....
T Consensus 158 yMtGG~ivVlG~~G~~~gaGM~gG~iyv~~~~~~ 191 (251)
T cd00982 158 YMTGGTVVVLGKTGRNFAAGMSGGVAYVLDEDGD 191 (251)
T ss_pred cccCCEEEEECCCCcCcccCCCCCEEEEECCcCC
Confidence 99999999999 5999999999999999998654
No 81
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.39 E-value=2.1e-12 Score=152.42 Aligned_cols=189 Identities=21% Similarity=0.290 Sum_probs=131.9
Q ss_pred cceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeecccCCcCCChhhhcCchhH
Q 000265 1009 KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADEL 1088 (1760)
Q Consensus 1009 ~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgrFGVt~~~L~~a~~i 1088 (1760)
.|++.+||++-+ ++ .|+.|++++|+....|.+..+++.+. .....+++..+.+||++..+......-
T Consensus 12 ~Pii~apM~~~s-~~----~la~avs~aGglG~l~~~~~~~~~l~--------~~i~~~~~~t~~pfgvn~~~~~~~~~~ 78 (307)
T TIGR03151 12 YPIFQGGMAWVA-TG----SLAAAVSNAGGLGIIGAGNAPPDVVR--------KEIRKVKELTDKPFGVNIMLLSPFVDE 78 (307)
T ss_pred CCEEcCCCCCCC-CH----HHHHHHHhCCCcceeccccCCHHHHH--------HHHHHHHHhcCCCcEEeeecCCCCHHH
Confidence 599999998632 33 59999999999999988877777663 234567777888999986543221111
Q ss_pred HHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHH
Q 000265 1089 QIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGV 1168 (1760)
Q Consensus 1089 qIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~ 1168 (1760)
++.+. +. .++.+++-. +-.+ .++|.++|.. +.+|+.. ++...
T Consensus 79 ~~~~~----------------------~~---~~v~~v~~~----~g~p---~~~i~~lk~~--g~~v~~~----v~s~~ 120 (307)
T TIGR03151 79 LVDLV----------------------IE---EKVPVVTTG----AGNP---GKYIPRLKEN--GVKVIPV----VASVA 120 (307)
T ss_pred HHHHH----------------------Hh---CCCCEEEEc----CCCc---HHHHHHHHHc--CCEEEEE----cCCHH
Confidence 11110 00 122222211 0111 2467888876 5555544 34456
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCC
Q 000265 1169 IASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1169 iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAd 1248 (1760)
.|..+.++|+|+|+++|++.|++... .|+...|+++.+.+ ++|||++|||.++.|+++++++||+
T Consensus 121 ~a~~a~~~GaD~Ivv~g~eagGh~g~--------~~~~~ll~~v~~~~-------~iPviaaGGI~~~~~~~~al~~GA~ 185 (307)
T TIGR03151 121 LAKRMEKAGADAVIAEGMESGGHIGE--------LTTMALVPQVVDAV-------SIPVIAAGGIADGRGMAAAFALGAE 185 (307)
T ss_pred HHHHHHHcCCCEEEEECcccCCCCCC--------CcHHHHHHHHHHHh-------CCCEEEECCCCCHHHHHHHHHcCCC
Confidence 78889999999999999987765321 24567788877653 5899999999999999999999999
Q ss_pred ccccchhHHHHhccc
Q 000265 1249 EFGFSTAPLITLGCI 1263 (1760)
Q Consensus 1249 aVg~GTa~L~Algc~ 1263 (1760)
+|++||.|+.+..|.
T Consensus 186 gV~iGt~f~~t~Es~ 200 (307)
T TIGR03151 186 AVQMGTRFLCAKECN 200 (307)
T ss_pred EeecchHHhcccccC
Confidence 999999999987663
No 82
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.39 E-value=2.6e-12 Score=160.08 Aligned_cols=175 Identities=18% Similarity=0.195 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+.+.+.|.++|..+|+.||+++-+.. ...|..+.++|||+|.|.+..|.-+.++ ....||.|+..+|.++.+.+.
T Consensus 254 ~~vl~~i~~i~~~~p~~~vi~g~v~t---~e~a~~l~~aGad~i~vg~g~gs~~~~r--~~~~~g~p~~~~~~~~~~~~~ 328 (486)
T PRK05567 254 EGVLDRVREIKAKYPDVQIIAGNVAT---AEAARALIEAGADAVKVGIGPGSICTTR--IVAGVGVPQITAIADAAEAAK 328 (486)
T ss_pred hhHHHHHHHHHhhCCCCCEEEeccCC---HHHHHHHHHcCCCEEEECCCCCccccce--eecCCCcCHHHHHHHHHHHhc
Confidence 45778899999999999999986533 4667889999999999854332222233 356899999999999988764
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhh-------------
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL------------- 1284 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~L------------- 1284 (1760)
. ..++||+||||+++.||+||++|||++|.+|+++--+.. +|-.+...+...
T Consensus 329 ~----~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~e-----------~pg~~~~~~g~~~k~y~gm~s~~a~ 393 (486)
T PRK05567 329 K----YGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEE-----------APGEVELYQGRSYKSYRGMGSLGAM 393 (486)
T ss_pred c----CCCeEEEcCCCCCHHHHHHHHHhCCCEEEECcccccccc-----------CCCceEEECCEEEEEEeccchHHHH
Confidence 3 258999999999999999999999999999998654432 232222211100
Q ss_pred ---------------HhhcCCC-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000265 1285 ---------------REKFAGE-------PEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1285 ---------------r~~~~g~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
.+++..+ ...|.+++..+...||..|..+|.++|.||..+..+...+.
T Consensus 394 ~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~t~ 463 (486)
T PRK05567 394 SKGSSDRYFQSVNAADKLVPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREKAEFVRITG 463 (486)
T ss_pred hcccccccccccccccccCCCceEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhcCeEEEECh
Confidence 0011100 12388899999999999999999999999988888877654
No 83
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.39 E-value=3e-12 Score=158.13 Aligned_cols=164 Identities=17% Similarity=0.190 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+.+.+.|.++|+.+|++||+++-+.. ...|..+.++|||+|.|.-+.|+++.++. ...+|.|...++.++++++.
T Consensus 250 ~~~~~~i~~i~~~~~~~~vi~G~v~t---~~~a~~l~~aGad~i~vg~g~G~~~~t~~--~~~~g~p~~~~i~~~~~~~~ 324 (450)
T TIGR01302 250 IYVIDSIKEIKKTYPDLDIIAGNVAT---AEQAKALIDAGADGLRVGIGPGSICTTRI--VAGVGVPQITAVYDVAEYAA 324 (450)
T ss_pred hHHHHHHHHHHHhCCCCCEEEEeCCC---HHHHHHHHHhCCCEEEECCCCCcCCccce--ecCCCccHHHHHHHHHHHHh
Confidence 45778899999998999999987543 36677899999999999656677766553 45789999999999998876
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhh-------------
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL------------- 1284 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~L------------- 1284 (1760)
.. ++|||+||||+++.||+||+++||++|++|+.|.-+..| |-.+...+...
T Consensus 325 ~~----~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~-----------pg~~~~~~g~~~k~yrgm~s~~a~ 389 (450)
T TIGR01302 325 QS----GIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTES-----------PGEYEIINGRRYKQYRGMGSLGAM 389 (450)
T ss_pred hc----CCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcC-----------CCceEEECCEEEEEEeccchHHHH
Confidence 43 589999999999999999999999999999987655433 33332222111
Q ss_pred ---------------HhhcCCC-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q 000265 1285 ---------------REKFAGE-------PEHVINFFFMLAEELREIMSQLGFRTITEM 1321 (1760)
Q Consensus 1285 ---------------r~~~~g~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~EL 1321 (1760)
.+.+..+ .-.|.+++..+...||..|..+|..|+.||
T Consensus 390 ~~~~~~ry~~~~~~~~~~~~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 448 (450)
T TIGR01302 390 TKGSSDRYLQDENKTKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDEL 448 (450)
T ss_pred hccccccccccccccccccCCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHH
Confidence 0111111 134889999999999999999999999998
No 84
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.38 E-value=2e-12 Score=152.13 Aligned_cols=196 Identities=17% Similarity=0.168 Sum_probs=133.6
Q ss_pred cceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeec-ccCCcCCChhhhcCc--
Q 000265 1009 KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQV-ASGRFGVSSYYLTNA-- 1085 (1760)
Q Consensus 1009 ~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQv-asgrFGVt~~~L~~a-- 1085 (1760)
.|++.+||++.+-.+ .||.|++++|+....+.+..+++++. .....+++. .+.+|||+...+...
T Consensus 3 yPIiqgpM~~vs~~~----~LaaAVS~AGgLG~la~~~~~~e~l~--------~~i~~~~~l~tdkPfGVnl~~~~~~~~ 70 (320)
T cd04743 3 YPIVQGPMTRVSDVA----EFAVAVAEGGGLPFIALALMRGEQVK--------ALLEETAELLGDKPWGVGILGFVDTEL 70 (320)
T ss_pred CCEECCCcCCCCCcH----HHHHHHHhCCccccCCCCCCCHHHHH--------HHHHHHHHhccCCCeEEEEeccCCCcc
Confidence 599999999766544 49999999999999988888888763 223456775 678999986322111
Q ss_pred hhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccC
Q 000265 1086 DELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAG 1165 (1760)
Q Consensus 1086 ~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~G 1165 (1760)
..-++.+..-.+| -.-.++. ..+. + +..||+. +.+|+... +
T Consensus 71 ~~~~l~vi~e~~v-----------------------~~V~~~~------G~P~---~-~~~lk~~--Gi~v~~~v----~ 111 (320)
T cd04743 71 RAAQLAVVRAIKP-----------------------TFALIAG------GRPD---Q-ARALEAI--GISTYLHV----P 111 (320)
T ss_pred hHHHHHHHHhcCC-----------------------cEEEEcC------CChH---H-HHHHHHC--CCEEEEEe----C
Confidence 1112222111111 1111111 1122 2 5678776 55665554 3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC---CCCceEEEEcCCcCCHHHHHHH
Q 000265 1166 VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND---LRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g---lr~rV~LiadGGIrtG~DVaKA 1242 (1760)
....|..+.++|||+|++.|+++|+|..+ +++...++++.+.+.... -..+||||++|||.+|++++.+
T Consensus 112 s~~~A~~a~~~GaD~vVaqG~EAGGH~G~--------~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaa 183 (320)
T cd04743 112 SPGLLKQFLENGARKFIFEGRECGGHVGP--------RSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMV 183 (320)
T ss_pred CHHHHHHHHHcCCCEEEEecCcCcCCCCC--------CCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHH
Confidence 34668889999999999999999987643 234456677777654211 1126999999999999999999
Q ss_pred HHcCC--------CccccchhHHHHhccc
Q 000265 1243 ALLGA--------EEFGFSTAPLITLGCI 1263 (1760)
Q Consensus 1243 laLGA--------daVg~GTa~L~Algc~ 1263 (1760)
++||| ++|+|||+||.+-.|.
T Consensus 184 laLGA~~~~~Ga~~GV~mGTrFl~t~Es~ 212 (320)
T cd04743 184 SALAAPLAERGAKVGVLMGTAYLFTEEAV 212 (320)
T ss_pred HHcCCcccccccccEEEEccHHhcchhhc
Confidence 99999 8999999999987764
No 85
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.36 E-value=5e-13 Score=137.96 Aligned_cols=113 Identities=29% Similarity=0.270 Sum_probs=58.0
Q ss_pred eecccCCCCCCCCCCCCce-------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHH
Q 000265 328 HSRFSTNTFPSWDRAQPMR-------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAF 400 (1760)
Q Consensus 328 H~RySTNT~psw~~AQPfr-------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~l 400 (1760)
|+|||| ..+...+|||. .++|||||+|....++.+ ...+. .+.+.||+|++
T Consensus 1 h~rl~~--~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l-------------------~~~g~-~~~~~~D~e~i 58 (125)
T PF13537_consen 1 HVRLST--DDSDEGAQPFVSSEDGELVLVFNGEIYNREELRREL-------------------EERGH-QFSSDSDSELI 58 (125)
T ss_dssp --------------------------EEEEEEEES-HHHHHHTS-------------------SSS----S--SSHHHHH
T ss_pred Cccccc--ccccccccccccccccCEEEEEEEEEEChHHHHHHh-------------------hhccc-ccCCCCCHHHH
Confidence 999999 55678999998 379999999655444322 12222 23679999998
Q ss_pred HHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCCce--EEEccCCCCCCCceE
Q 000265 401 DGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRY--LGATLDRNGLRPGRF 478 (1760)
Q Consensus 401 d~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG~~--igA~lDrnGLRPlr~ 478 (1760)
.++++. |.+|...+++..+|+|++++.|.+. +.++|||.|.||| |
T Consensus 59 ~~~~~~--------------------------------~~~~~~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~rpL-y 105 (125)
T PF13537_consen 59 LHLYEE--------------------------------YREWGEDFLKRLDGPFAFVIWDKDKKRLFLARDRFGIRPL-Y 105 (125)
T ss_dssp HHHHHH-----------------------------------HGGGGGGT--EEEEEEEEETTE--EEEEE-TT--S---E
T ss_pred HHHHHH--------------------------------HHHHHHHHHHhCCceEEEEEEeCCCcEEEEEECCCCCCCe-E
Confidence 877653 2233334566789999988876644 7779999999999 8
Q ss_pred EEEeC-CEEEEEeccccc
Q 000265 479 YITHS-GRVIMASEVGVV 495 (1760)
Q Consensus 479 ~~t~d-~~~i~ASE~gal 495 (1760)
+...+ +.+++|||..+|
T Consensus 106 y~~~~g~~~~faSe~~~L 123 (125)
T PF13537_consen 106 YGRTDGNGLAFASEIKAL 123 (125)
T ss_dssp EEEETT-EEEEESSHHHH
T ss_pred EEEeCCCEEEEEEcHHHh
Confidence 88886 699999998765
No 86
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=7.4e-12 Score=155.81 Aligned_cols=180 Identities=21% Similarity=0.222 Sum_probs=137.6
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce----eeeccccccChh
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR----ILGHNGEINTLR 358 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr----~laHNGEInt~~ 358 (1760)
+.++|+.++..++ ++|..|.+.++..-+. ...+.+.++|+|+|+.|-|.|+-.||||-. .++|||=|-||.
T Consensus 31 DSaGiav~~~~~l~~~k~~Gkv~~l~~~~~----~~~~~~~~gIgHTRWATHG~P~~~NAHPh~~~~~avVHNGIIeN~~ 106 (597)
T COG0449 31 DSAGIAVVGDGSLNVRKQVGKISNLEELLN----KEPLIGGVGIAHTRWATHGGPTRANAHPHSDGEFAVVHNGIIENFA 106 (597)
T ss_pred CcccEEEEeCCeEEEEEccCCHHHHHhhhc----ccccCCceeeeeccccCCCCCCcCCCCCCCCCCEEEEeCchhhCHH
Confidence 4689999976666 9999999999833222 133789999999999999999999999984 379999999888
Q ss_pred hHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHH
Q 000265 359 GNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKA 438 (1760)
Q Consensus 359 gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~ra 438 (1760)
..+.++.+++ . .|.+.||||++.++++...+.+ +.+|+..++
T Consensus 107 eLr~eL~~~G-------------------~-~F~S~TDTEVi~hLi~~~~~~~--~~~a~~~~l---------------- 148 (597)
T COG0449 107 ELKEELEAKG-------------------Y-VFKSDTDTEVIAHLLEEIYDTS--LLEAVKKVL---------------- 148 (597)
T ss_pred HHHHHHHhcC-------------------C-EEecCCchHHHHHHHHHHHHhH--HHHHHHHHH----------------
Confidence 8777665443 3 3578999999999999776655 788887664
Q ss_pred HHHHHHhccCCCCCCcEEEec---C-CceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCCcEE
Q 000265 439 LYEYFSALMEPWDGPALISFT---D-GRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514 (1760)
Q Consensus 439 fYey~s~lmepwdGPa~iv~t---d-G~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml 514 (1760)
..+.|.|++++. + +++++| ||| -|| +++..++..++||..-++--.-.+++ -|+.||+.
T Consensus 149 ---------~~l~Gsyal~~~~~~~p~~i~~a---r~~-sPL-~iG~g~~e~f~aSD~~a~l~~t~~~~---~l~dgd~~ 211 (597)
T COG0449 149 ---------KRLEGSYALLCTHSDFPDELVAA---RKG-SPL-VIGVGEGENFLASDVSALLNFTRRFV---YLEEGDIA 211 (597)
T ss_pred ---------HHhcceeEEEEEecCCCCeEEEE---cCC-CCe-EEEecCCcceEecChhhhhhhhceEE---EeCCCCEE
Confidence 446999876653 2 355554 666 699 88988889999999888732334555 58888888
Q ss_pred EEEcCCCE
Q 000265 515 LVDFEKRI 522 (1760)
Q Consensus 515 ~vd~~~g~ 522 (1760)
.|..++=.
T Consensus 212 ~~~~~~v~ 219 (597)
T COG0449 212 KLTTDGVS 219 (597)
T ss_pred EEECCcEE
Confidence 88666544
No 87
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.35 E-value=6.4e-12 Score=156.50 Aligned_cols=176 Identities=13% Similarity=0.059 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh-
Q 000265 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA- 1218 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~- 1218 (1760)
..+.|+++|+.+|. ++.|+.. ++.....|..+.++|||+|.|+.++|.-+.++. ....|.|...++.++.+++..
T Consensus 270 ~~~~i~~ir~~~~~-~~~V~aG-nV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~--~~~~g~~~~~ai~~~~~a~~~~ 345 (502)
T PRK07107 270 QKRTLDWIREKYGD-SVKVGAG-NVVDREGFRYLAEAGADFVKVGIGGGSICITRE--QKGIGRGQATALIEVAKARDEY 345 (502)
T ss_pred HHHHHHHHHHhCCC-CceEEec-cccCHHHHHHHHHcCCCEEEECCCCCcCccccc--ccCCCccHHHHHHHHHHHHHHH
Confidence 35679999998863 3444431 112234677799999999999666554444442 356789999999999987643
Q ss_pred ---CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHh---------
Q 000265 1219 ---NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLRE--------- 1286 (1760)
Q Consensus 1219 ---~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~--------- 1286 (1760)
.| .++|||+||||+++.||+||+++|||+|++|+.+--+. .+|-.+...+....|
T Consensus 346 ~~~~g--~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~-----------espg~~~~~~g~~~k~yrgm~s~~ 412 (502)
T PRK07107 346 FEETG--VYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFD-----------ESPTNKVNINGNYMKEYWGEGSNR 412 (502)
T ss_pred HhhcC--CcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccc-----------cCCCcEEEECCEEEEEeecccCHh
Confidence 23 25999999999999999999999999999999764432 334333322221111
Q ss_pred -----hcC----------CC-------HHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000265 1287 -----KFA----------GE-------PEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1287 -----~~~----------g~-------~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
+|. .+ ...|.+++..+...||..|..+|..+|.||..+..+...+.
T Consensus 413 a~~~~ry~~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~~~f~~~t~ 480 (502)
T PRK07107 413 ARNWQRYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQKAKITLVSS 480 (502)
T ss_pred hhhccccccccccccccCCccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhCCeEEEECc
Confidence 111 00 12388899999999999999999999999988887776653
No 88
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.35 E-value=5.3e-12 Score=150.39 Aligned_cols=202 Identities=23% Similarity=0.263 Sum_probs=134.6
Q ss_pred ccccceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeecccCC-----cC----
Q 000265 1006 EIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGR-----FG---- 1076 (1760)
Q Consensus 1006 ~i~~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgr-----FG---- 1076 (1760)
.|..||+.++|.+ +| +..||.|+++.|+....+.++...+.+. .....+++.+..+ |+
T Consensus 12 ~i~~PIiq~gM~~--vs---~~~LA~Avs~aGglG~ia~~~~~~e~l~--------~~i~~~~~~~~~p~~~~~f~~~~~ 78 (336)
T COG2070 12 GIKYPIIQGGMAG--VS---TPELAAAVSNAGGLGIIASGGLPAEQLR--------AEIRKIRALTDKPFVANNFGSAPA 78 (336)
T ss_pred CccCCeecCCccc--cC---cHHHHHHHhccCCccccccccCCHHHHH--------HHHHHHHHhcCCcchhcccccccc
Confidence 3456999999986 33 2369999999999887777777666553 2345677777777 44
Q ss_pred -CChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCc
Q 000265 1077 -VSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGAR 1155 (1760)
Q Consensus 1077 -Vt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~p 1155 (1760)
++...+... .++... .+ ...+. ..++.+++|.--. .+ .++|..++.. +.+
T Consensus 79 ~v~~~~l~~~-------~~~~~~---------~~---~~ii~--~~~vpvv~~~~g~---~~---~~~i~~~~~~--g~~ 129 (336)
T COG2070 79 PVNVNILVAR-------RNAAEA---------GV---DAIIE--GAGVPVVSTSFGA---PP---AEFVARLKAA--GIK 129 (336)
T ss_pred cchhheeccc-------ccchHH---------hh---hhHHh--cCCCCEEeccCCC---Cc---HHHHHHHHHc--CCe
Confidence 333222210 000000 00 00111 1233334432111 11 2346667664 566
Q ss_pred eEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCC
Q 000265 1156 ISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKT 1235 (1760)
Q Consensus 1156 V~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrt 1235 (1760)
|+.+.+ ....|..+.++|+|+|++.|.++|+|... ....+.++..++++.+... .||||++|||.+
T Consensus 130 v~~~v~----~~~~A~~~~~~G~d~vI~~g~eAGGH~g~----~~~~~~t~~Lv~ev~~~~~------~iPViAAGGI~d 195 (336)
T COG2070 130 VIHSVI----TVREALKAERAGADAVIAQGAEAGGHRGG----VDLEVSTFALVPEVVDAVD------GIPVIAAGGIAD 195 (336)
T ss_pred EEEEeC----CHHHHHHHHhCCCCEEEecCCcCCCcCCC----CCCCccHHHHHHHHHHHhc------CCCEEEecCccC
Confidence 766653 34678889999999999999999988664 2233456778888888742 299999999999
Q ss_pred HHHHHHHHHcCCCccccchhHHHHhccc
Q 000265 1236 GRDVAIAALLGAEEFGFSTAPLITLGCI 1263 (1760)
Q Consensus 1236 G~DVaKAlaLGAdaVg~GTa~L~Algc~ 1263 (1760)
|++++.|++|||++|+|||+|+.+-.|.
T Consensus 196 g~~i~AAlalGA~gVq~GT~Fl~t~Ea~ 223 (336)
T COG2070 196 GRGIAAALALGADGVQMGTRFLATKEAD 223 (336)
T ss_pred hHHHHHHHHhccHHHHhhhhhhcccccC
Confidence 9999999999999999999999987664
No 89
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.32 E-value=1.6e-11 Score=152.04 Aligned_cols=175 Identities=16% Similarity=0.123 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+.+.++|+++|..+|++||++-.+. ....+..+.++|||+|.|.+..|.....+ ....+|.|+..++.++.+++.
T Consensus 251 ~~~~~~i~~i~~~~~~~~vi~g~~~---t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr--~~~~~g~~~~~a~~~~~~~~~ 325 (475)
T TIGR01303 251 VKMISAIKAVRALDLGVPIVAGNVV---SAEGVRDLLEAGANIIKVGVGPGAMCTTR--MMTGVGRPQFSAVLECAAEAR 325 (475)
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccC---CHHHHHHHHHhCCCEEEECCcCCccccCc--cccCCCCchHHHHHHHHHHHH
Confidence 6678899999999999999985432 34567789999999999977644434333 456889999999999998877
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccc-cChhh------------
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIAT-QDPVL------------ 1284 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giat-qdp~L------------ 1284 (1760)
.. .++|||||||+++.||+||+++||++|++|+.|--+. ..|-.+.. .+...
T Consensus 326 ~~----~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~-----------espg~~~~~~~g~~~k~yrGmgs~~a 390 (475)
T TIGR01303 326 KL----GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTY-----------ESPGDLMRDRDGRPYKESFGMASKRA 390 (475)
T ss_pred Hc----CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccc-----------cCCCceEEeECCEEEEEEecccCHHH
Confidence 64 4899999999999999999999999999999764332 22322221 11000
Q ss_pred ---------------HhhcCCCHH-----------HHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000265 1285 ---------------REKFAGEPE-----------HVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1285 ---------------r~~~~g~~e-----------~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
.+.+..+-| .|.+++..+...||..|..+|.++|+||..+..+.+.+.
T Consensus 391 ~~~~~~~~ry~~~~~~~~v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~~~~~~~t~ 464 (475)
T TIGR01303 391 VVARTGADNAFDRARKALFEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERAVVGVQSG 464 (475)
T ss_pred HhhccccchhhhhhccccccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhCCEEEEEcc
Confidence 111122222 277899999999999999999999999988888887753
No 90
>PLN02826 dihydroorotate dehydrogenase
Probab=99.31 E-value=3.1e-11 Score=146.98 Aligned_cols=156 Identities=21% Similarity=0.217 Sum_probs=114.0
Q ss_pred cCCCC--CCCCCCHHHHHHHHHHHHHh--------CCCCceEEEEcccc---CHHHHHHHHHHcCCCEEEEecCCC----
Q 000265 1126 ISPPP--HHDIYSIEDLAQLIYDLKNA--------NPGARISVKLVSEA---GVGVIASGVVKGHADHVLISGHDG---- 1188 (1760)
Q Consensus 1126 isP~~--hhDiySiedLaqlI~~Lk~~--------~p~~pV~VKlv~~~---Gvg~iA~~aakaGAD~IvIsG~~G---- 1188 (1760)
.||+. ..+....+.+.+++..++.. ..+.||+||+.+.. .+..+|..+.++|+|+|++++..-
T Consensus 225 ScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~ 304 (409)
T PLN02826 225 SSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPD 304 (409)
T ss_pred CCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCcc
Confidence 35542 34556678888888888744 23689999998754 467788889999999999987421
Q ss_pred ---------CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000265 1189 ---------GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1189 ---------GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
++|+-+...++.. ....+.++++.+ ..+++||++|||.|+.|+++.+++||++|+++|++++-
T Consensus 305 dl~~~~~~~~~GGlSG~pl~~~---sl~~v~~l~~~~-----~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~ 376 (409)
T PLN02826 305 SVLGHPHADEAGGLSGKPLFDL---STEVLREMYRLT-----RGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYE 376 (409)
T ss_pred chhcccccccCCCcCCccccHH---HHHHHHHHHHHh-----CCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhc
Confidence 1122111112211 234455555542 34799999999999999999999999999999998871
Q ss_pred hccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCC
Q 000265 1260 LGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGR 1324 (1760)
Q Consensus 1260 lgc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr 1324 (1760)
+| .++..|.+||.++|...|+++++|++|.
T Consensus 377 -------------------------------Gp----~~i~~I~~eL~~~l~~~G~~si~e~iG~ 406 (409)
T PLN02826 377 -------------------------------GP----ALIPRIKAELAACLERDGFKSIQEAVGA 406 (409)
T ss_pred -------------------------------CH----HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 23 2567888999999999999999999984
No 91
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.31 E-value=1.9e-11 Score=145.74 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=113.4
Q ss_pred CCCCCCCCCC--H-HHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCCCCCCCcc---cccc
Q 000265 1127 SPPPHHDIYS--I-EDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDGGTGASRW---TGIK 1199 (1760)
Q Consensus 1127 sP~~hhDiyS--i-edLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~---~si~ 1199 (1760)
+|+...+.+. + +.+.+++..+++.. +.||+||+.+.. .+..+|..+.++|+|+|++.+..-+. ...+ ....
T Consensus 137 cpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~-~~d~~~~~~~~ 214 (334)
T PRK07565 137 YLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQP-DIDLETLEVVP 214 (334)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCC-CcChhhccccc
Confidence 4555444432 2 33678889998875 799999997653 45567888999999999998763221 1111 1112
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccc
Q 000265 1200 NAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIAT 1279 (1760)
Q Consensus 1200 ~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giat 1279 (1760)
.+|+++...++.+.+......-..++|||+.|||+|+.|+++++++||++|++||+++.-
T Consensus 215 ~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~-------------------- 274 (334)
T PRK07565 215 GLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRH-------------------- 274 (334)
T ss_pred CCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhh--------------------
Confidence 345544333332222111100112699999999999999999999999999999998861
Q ss_pred cChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCce
Q 000265 1280 QDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDM 1327 (1760)
Q Consensus 1280 qdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dL 1327 (1760)
++ .++..+.+||+.+|...|+++++|++|...+
T Consensus 275 -----------g~----~~~~~i~~~L~~~l~~~g~~~i~e~~g~~~~ 307 (334)
T PRK07565 275 -----------GP----DYIGTILRGLEDWMERHGYESLQQFRGSMSQ 307 (334)
T ss_pred -----------Cc----HHHHHHHHHHHHHHHHcCCCCHHHHhccccc
Confidence 12 3678899999999999999999999885443
No 92
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.30 E-value=1.2e-11 Score=150.01 Aligned_cols=218 Identities=19% Similarity=0.185 Sum_probs=128.2
Q ss_pred cceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheee-cc-cCCcCCChhhhcC--
Q 000265 1009 KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQ-VA-SGRFGVSSYYLTN-- 1084 (1760)
Q Consensus 1009 ~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQ-va-sgrFGVt~~~L~~-- 1084 (1760)
.|++.+||..|.-++ .|+.|+.++|+++..|.|+.+++++. .....|++ +. ..+||||.....+
T Consensus 14 yPii~gpMa~Giss~----eLVaAvs~AGgLG~lgag~l~~e~l~--------~~I~~ir~~lt~~~PfGVNL~~~~~~~ 81 (418)
T cd04742 14 YAYVAGAMARGIASA----ELVVAMGKAGMLGFFGAGGLPLDEVE--------QAIERIQAALGNGEPYGVNLIHSPDEP 81 (418)
T ss_pred ccEECCcccCCCCCH----HHHHHHHhCCCeeeecCCCCCHHHHH--------HHHHHHHHhccCCCCeEEeeecCCCCc
Confidence 499999998776566 59999999999999999999999874 23455666 35 6789998643111
Q ss_pred ---chhHHHhhhccCCCCCC-CCCCCccchHHHHHHhC--C---CCc-----c---cccCCCCCC-CCCCHHHHHHHHHH
Q 000265 1085 ---ADELQIKMAQGAKPGEG-GELPGHKVIGDIAVTRN--S---TAG-----V---GLISPPPHH-DIYSIEDLAQLIYD 1146 (1760)
Q Consensus 1085 ---a~~iqIKiaQGAKpGeG-G~Lpg~KV~~~IA~~R~--~---~pG-----~---~lisP~~hh-DiySiedLaqlI~~ 1146 (1760)
.+.+++-+..|.+--+- +.+. +++.+...|. . ..| . .-+|.+..- -+.++- -.++|..
T Consensus 82 ~~e~~~v~l~le~gV~~ve~sa~~~---~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~pp-p~~~v~~ 157 (418)
T cd04742 82 ELEEGLVDLFLRHGVRVVEASAFMQ---LTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPA-PERILKK 157 (418)
T ss_pred hhHHHHHHHHHHcCCCEEEeccccC---CCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCC-CHHHHHH
Confidence 12233333344321110 0000 0111111110 0 000 0 000111000 000100 0234556
Q ss_pred HHHhCCCCceEEEEccccCHHHHHHHHHHcC-CCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH----hCCC
Q 000265 1147 LKNANPGARISVKLVSEAGVGVIASGVVKGH-ADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV----ANDL 1221 (1760)
Q Consensus 1147 Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaG-AD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~----~~gl 1221 (1760)
|++.. . + ...-|..+.+.| +|.|++. .+.|+|... .|+...|+.+.+... ..+.
T Consensus 158 L~~~G-~--i---------t~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~--------~~~~~Llp~v~~l~d~v~~~~~~ 216 (418)
T cd04742 158 LLAEG-K--I---------TEEQAELARRVPVADDITVE-ADSGGHTDN--------RPLSVLLPTIIRLRDELAARYGY 216 (418)
T ss_pred HHHcC-C--C---------CHHHHHHHHhCCCCCEEEEc-ccCCCCCCC--------ccHHhHHHHHHHHHHHHhhcccc
Confidence 65541 0 0 123456688899 6999998 777777532 244455555554322 1233
Q ss_pred CCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccc
Q 000265 1222 RGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCI 1263 (1760)
Q Consensus 1222 r~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~ 1263 (1760)
..+|||+++|||.||++|+.|++|||++|++||.|+.+..|.
T Consensus 217 ~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea~ 258 (418)
T cd04742 217 RRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEAG 258 (418)
T ss_pred CCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCcccc
Confidence 346999999999999999999999999999999999976653
No 93
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.30 E-value=5.4e-12 Score=167.84 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=116.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHcC---CcEEEEecccccCcchhhhhhHHHHHhhccCCCCCccEEEEEecCccchhhhcC
Q 000265 1369 DHGLDMALDQKLIKLSKAALEKA---LPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFL 1445 (1760)
Q Consensus 1369 ~~~~~~~ld~~~~~~~~~~l~~~---~~~~~~~~i~n~dR~vG~~Ls~~i~~~~g~~gl~~~~i~i~~~G~aGq~~Gaf~ 1445 (1760)
|..+...|..++.+. .-++| .++.|.+.-.-.++ +|+.+ +.| ++|+++|+|++++|..|
T Consensus 1245 dR~vGt~ls~~i~~~---yg~~gl~~~~i~i~~~G~aGqs-~Gaf~-------------~~G-~~i~v~GdAndyvGkgm 1306 (1485)
T PRK11750 1245 DRSVGARLSGEIARR---HGNQGMADAPIKLRFTGTAGQS-FGVWN-------------AGG-LELYLEGDANDYVGKGM 1306 (1485)
T ss_pred cccHHHHHHHHHHHH---hCcCCCCCCeEEEEEEccCccc-ccccc-------------CCC-CEEEEEecccccccccc
Confidence 334445555544333 22333 24555555333444 57763 333 56788999999999999
Q ss_pred CCCcEEEEEecCCc------------hhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcccEEEEeccccccccc
Q 000265 1446 CPGILLELEGDSND------------YVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCV 1513 (1760)
Q Consensus 1446 ~~G~~i~v~G~A~D------------yvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~v~G~aGeR~gv 1513 (1760)
+|++|+|.|+++. .++.||+||+|.|+|++|.+ ++--|+||.+.|.| +|+++|.
T Consensus 1307 -sGG~I~V~g~~~~~~~~~~~~i~Gn~~~yGatgG~i~i~G~AG~R------------~gvr~sG~~~VVeG-~Gd~~~E 1372 (1485)
T PRK11750 1307 -AGGKIVIRPPVGSAFRSHETAIIGNTCLYGATGGKLFAAGRAGER------------FAVRNSGAIAVVEG-IGDHGCE 1372 (1485)
T ss_pred -cCCEEEEECCCccccccccccccccceeeccccCEEEEEcccccc------------eeecCCCCeEEEeC-CCcchhh
Confidence 8999999999963 56689999999999995544 44469999999999 8999999
Q ss_pred ccCCcEEEEcC-CCccccccccCcEEEEeCCCCC---cccCCCcc
Q 000265 1514 RNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGR---NFAAGMSG 1554 (1760)
Q Consensus 1514 r~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~---~~gagM~g 1554 (1760)
+|.||+|||.| +|.+.|.-|+||+++|.|..|. +++..|..
T Consensus 1373 yMtgG~vvVlG~~G~~~gagM~gG~~yv~~~~~~~~~~~n~~~V~ 1417 (1485)
T PRK11750 1373 YMTGGIVCVLGKTGVNFGAGMTGGFAYVLDEDGDFVDRVNHELVE 1417 (1485)
T ss_pred hhcCCEEEEeCCCCcchhcCCCCCEEEEECCccchhhhcCHhHee
Confidence 99999999999 5999999999999999998876 35566664
No 94
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.26 E-value=4.1e-11 Score=140.57 Aligned_cols=149 Identities=23% Similarity=0.308 Sum_probs=115.5
Q ss_pred CCC-CHHHHHHHHHHHHHhCCCCceEEEEccc-cCHHHHHHHHHHcCCCEEEEecCCC-C---------------CCCCc
Q 000265 1133 DIY-SIEDLAQLIYDLKNANPGARISVKLVSE-AGVGVIASGVVKGHADHVLISGHDG-G---------------TGASR 1194 (1760)
Q Consensus 1133 Diy-SiedLaqlI~~Lk~~~p~~pV~VKlv~~-~Gvg~iA~~aakaGAD~IvIsG~~G-G---------------TGas~ 1194 (1760)
++- +.|.+.+++.++|+.. ++||.||+.++ ..+..+|..+.++|+|+|++.+.-. + +|+-+
T Consensus 141 ~l~~~~e~l~~l~~~vk~~~-~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLS 219 (310)
T COG0167 141 ALGQDPELLEKLLEAVKAAT-KVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLS 219 (310)
T ss_pred hhccCHHHHHHHHHHHHhcc-cCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcC
Confidence 444 6788999999999987 89999999874 4777889999999999999876422 1 22222
Q ss_pred cccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCC
Q 000265 1195 WTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCP 1274 (1760)
Q Consensus 1195 ~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP 1274 (1760)
...++ ..+|.-+++...+ +..++|||..|||.|+.|+++.+++||++||++|++++-
T Consensus 220 G~~ik------p~al~~v~~l~~~--~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~--------------- 276 (310)
T COG0167 220 GPPLK------PIALRVVAELYKR--LGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYK--------------- 276 (310)
T ss_pred cccch------HHHHHHHHHHHHh--cCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeee---------------
Confidence 22222 2345555554443 345799999999999999999999999999999997761
Q ss_pred CcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000265 1275 VGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1275 ~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
.| .++..|.++|.++|...|+.|++|++|..
T Consensus 277 ------Gp--------------~i~~~I~~~l~~~l~~~g~~si~d~iG~~ 307 (310)
T COG0167 277 ------GP--------------GIVKEIIKGLARWLEEKGFESIQDIIGSA 307 (310)
T ss_pred ------Cc--------------hHHHHHHHHHHHHHHHcCCCCHHHHhchh
Confidence 12 25678899999999999999999999854
No 95
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=99.26 E-value=1.5e-11 Score=155.67 Aligned_cols=131 Identities=23% Similarity=0.205 Sum_probs=99.1
Q ss_pred EEEEeecccCCCCCCCCCCCCce------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChH
Q 000265 324 MALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDS 397 (1760)
Q Consensus 324 ~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDS 397 (1760)
++|+|.|.|+.+.. ..+|||. .++|||||+|+...++.+. . ..+.+.|||
T Consensus 44 ~~Lgh~RLsI~d~~--~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~-------------------~---~~f~t~sD~ 99 (578)
T PLN02549 44 CYLAHERLAIMDPE--SGDQPLYNEDKTIVVTANGEIYNHKELREKLK-------------------L---HKFRTGSDC 99 (578)
T ss_pred eEEEEeeeeEeCCC--CCCCCcCcCCCCEEEEEEEEEEcHHHHHHHHH-------------------h---CCCCCCCHH
Confidence 58999999999863 5799995 3799999998887765432 1 235789999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCCCC
Q 000265 398 GAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLRP 475 (1760)
Q Consensus 398 e~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGLRP 475 (1760)
|+|.++++. .|. +. ++..+|.|++++.|. +.+.++|||.|+||
T Consensus 100 Evil~ly~~---~G~---~~-----------------------------~~~L~G~FAf~i~D~~~~~l~~aRD~~GikP 144 (578)
T PLN02549 100 EVIAHLYEE---HGE---EF-----------------------------VDMLDGMFSFVLLDTRDNSFIAARDHIGITP 144 (578)
T ss_pred HHHHHHHHH---HHH---HH-----------------------------HHhCCCceEEEEEECCCCEEEEEECCCCCCC
Confidence 999887642 231 22 233599998888663 45666899999999
Q ss_pred ceEEEEe-CCEEEEEeccccccCCCCcEEEccccCCCcEEEEE
Q 000265 476 GRFYITH-SGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVD 517 (1760)
Q Consensus 476 lr~~~t~-d~~~i~ASE~galdi~~~~vv~kgrl~PGeml~vd 517 (1760)
| ||+.. ++.+++|||..+|.-...+|. +|.||.++.++
T Consensus 145 L-yyg~~~~g~~~fASE~KaL~~~~~~I~---~lpPGh~l~~~ 183 (578)
T PLN02549 145 L-YIGWGLDGSVWFASEMKALCDDCERFE---EFPPGHYYSSK 183 (578)
T ss_pred e-EEEEecCCeEEEEecHHHHHHHhCCEE---EeCCCeEEEEc
Confidence 9 88865 678999999999853345564 79999998875
No 96
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=99.24 E-value=2.5e-11 Score=154.06 Aligned_cols=137 Identities=22% Similarity=0.179 Sum_probs=102.0
Q ss_pred cEEEEeecccCCCCCCCCCCCCce------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCCh
Q 000265 323 YMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSD 396 (1760)
Q Consensus 323 ~~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SD 396 (1760)
.++++|.|.|+..... ..|||. +++|||||+|+...++.+. ..+. .+.+.||
T Consensus 48 ~~~lgh~RLsIvd~~~--g~QP~~~~d~~~~lv~NGEIYN~~eLr~~L~-------------------~~g~-~f~t~sD 105 (586)
T PTZ00077 48 YNILAHERLAIVDLSD--GKQPLLDDDETVALMQNGEIYNHWEIRPELE-------------------KEGY-KFSSNSD 105 (586)
T ss_pred cEEEEeccceecCCCC--CCCCcCCCCCCEEEEEEEEEcCHHHHHHHHH-------------------hcCC-cCCCCCH
Confidence 4799999999999764 799996 4799999998887765442 2222 2478999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCCC
Q 000265 397 SGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLR 474 (1760)
Q Consensus 397 Se~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGLR 474 (1760)
+|+|.++++ +.|. .+++ +..+|.|++++.|. +.+.++|||.|+|
T Consensus 106 ~Evil~ly~---~~G~--~~~l-----------------------------~~L~G~FAf~i~D~~~~~l~~aRD~~Gik 151 (586)
T PTZ00077 106 CEIIGHLYK---EYGP--KDFW-----------------------------NHLDGMFATVIYDMKTNTFFAARDHIGII 151 (586)
T ss_pred HHHHHHHHH---HhCH--HHHH-----------------------------HhcCCCEEEEEEECCCCEEEEEECCCCCc
Confidence 999987754 3342 1222 23499998888664 4556689999999
Q ss_pred CceEEEE-eCCEEEEEeccccccCCCCcEEEccccCCCcEEEEEcC
Q 000265 475 PGRFYIT-HSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFE 519 (1760)
Q Consensus 475 Plr~~~t-~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml~vd~~ 519 (1760)
|| ||+. .++.+++|||..+|.-...+|. +|.||..+.++.+
T Consensus 152 PL-yy~~~~~g~~~faSE~kaL~~~~~~I~---~lpPGh~l~~~~~ 193 (586)
T PTZ00077 152 PL-YIGYAKDGSIWFSSELKALHDQCVEVK---QFPPGHYYDQTKE 193 (586)
T ss_pred Ce-EEEEecCCeEEEEecHHHHHHhcCCEE---EeCCCcEEEecCC
Confidence 99 8886 4678999999998853334554 7999999988754
No 97
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.24 E-value=6.1e-11 Score=141.10 Aligned_cols=146 Identities=19% Similarity=0.185 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCCCCCCCccc---cccccCCCHH----HHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDGGTGASRWT---GIKNAGLPWE----LGL 1209 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~---si~~~GlP~~----~~L 1209 (1760)
+.+.+++.++++.. +.||+||+.+.. .+..++..+.++|||+|++.+...+. ...+. ....+|++.. .+|
T Consensus 149 ~~~~eiv~~v~~~~-~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~-~id~~~~~~~~~~glSG~~~~~~al 226 (325)
T cd04739 149 QRYLDILRAVKSAV-TIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQP-DIDLETLEVVPNLLLSSPAEIRLPL 226 (325)
T ss_pred HHHHHHHHHHHhcc-CCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCCC-CccccccceecCCCcCCccchhHHH
Confidence 45678899999876 799999998653 56678888999999999998873221 11110 0112222211 233
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcC
Q 000265 1210 AETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFA 1289 (1760)
Q Consensus 1210 aev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~ 1289 (1760)
.-+.+... ..++||++.|||.|+.|+++++++||++|++||+++.-
T Consensus 227 ~~v~~v~~----~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~------------------------------ 272 (325)
T cd04739 227 RWIAILSG----RVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRH------------------------------ 272 (325)
T ss_pred HHHHHHHc----ccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhc------------------------------
Confidence 33333221 12699999999999999999999999999999998861
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCC
Q 000265 1290 GEPEHVINFFFMLAEELREIMSQLGFRTITEMIGR 1324 (1760)
Q Consensus 1290 g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr 1324 (1760)
++. ++..|.+||..+|...|+++++|++|.
T Consensus 273 -gp~----~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 273 -GPD----YIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred -Cch----HHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 122 567899999999999999999999883
No 98
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.20 E-value=7.6e-10 Score=130.19 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCCCCC---------------CCccccc
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDGGTG---------------ASRWTGI 1198 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~GGTG---------------as~~~si 1198 (1760)
.+++-+.++|..+|+.. +.||+||+.+.. .+..+|..+.++|+|+|++.+...|.. +.+...+
T Consensus 140 ~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~ 218 (301)
T PRK07259 140 TDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAI 218 (301)
T ss_pred cCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCc
Confidence 35788899999999987 899999997542 445677889999999999866432211 1111111
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCccc
Q 000265 1199 KNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIA 1278 (1760)
Q Consensus 1199 ~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~gia 1278 (1760)
... ....+.++.+. + ++||++.|||.|+.|+.++++.|||.|++||+++.
T Consensus 219 ~p~---~l~~v~~i~~~-----~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-------------------- 268 (301)
T PRK07259 219 KPI---ALRMVYQVYQA-----V--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-------------------- 268 (301)
T ss_pred ccc---cHHHHHHHHHh-----C--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc--------------------
Confidence 111 12233333332 2 58999999999999999999999999999999776
Q ss_pred ccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000265 1279 TQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1279 tqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
+|. ++..+.++++.+|...|+++++|++|..
T Consensus 269 --~P~--------------~~~~i~~~l~~~~~~~g~~~i~~~~g~~ 299 (301)
T PRK07259 269 --DPY--------------AFPKIIEGLEAYLDKYGIKSIEEIVGIA 299 (301)
T ss_pred --CcH--------------HHHHHHHHHHHHHHHcCCCCHHHHhCcc
Confidence 232 5678889999999999999999998843
No 99
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.18 E-value=2e-10 Score=138.80 Aligned_cols=155 Identities=18% Similarity=0.165 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCC-CCCC-----Cccccc----cccCC
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDG-GTGA-----SRWTGI----KNAGL 1203 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~G-GTGa-----s~~~si----~~~Gl 1203 (1760)
.+++-+.+++.++|+.. +.||+||+.+.. .+..+|..+.++|||+|++.+.-. +.+- .+...+ ..-|+
T Consensus 165 q~~e~~~~i~~~Vk~~~-~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGl 243 (385)
T PLN02495 165 QDCDLLEEVCGWINAKA-TVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGY 243 (385)
T ss_pred cCHHHHHHHHHHHHHhh-cCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCc
Confidence 35788889999999886 899999998764 677788999999999999866533 1111 010000 11112
Q ss_pred C--H--HHHHHHHHHHHHhCC--CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcc
Q 000265 1204 P--W--ELGLAETHQTLVAND--LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGI 1277 (1760)
Q Consensus 1204 P--~--~~~Laev~q~L~~~g--lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~gi 1277 (1760)
. . ..+|..+++...... ...+++|++.|||.|++|+++.+++||+.|+++|++|+-
T Consensus 244 SG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~------------------ 305 (385)
T PLN02495 244 SSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMH------------------ 305 (385)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeec------------------
Confidence 1 1 134444444333211 123599999999999999999999999999999997761
Q ss_pred cccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000265 1278 ATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1278 atqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
++ .++..|.+||..+|...|+++++|++|+.
T Consensus 306 -------------Gp----~vi~~i~~~L~~~m~~~G~~si~e~~G~~ 336 (385)
T PLN02495 306 -------------GY----PLVKNLCAELQDFMKKHNFSSIEDFRGAS 336 (385)
T ss_pred -------------Cc----HHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 12 25677899999999999999999999965
No 100
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.18 E-value=1.5e-10 Score=141.26 Aligned_cols=217 Identities=20% Similarity=0.216 Sum_probs=123.0
Q ss_pred cceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhhhheeecccC-C-cCCChhhhc-Cc
Q 000265 1009 KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASG-R-FGVSSYYLT-NA 1085 (1760)
Q Consensus 1009 ~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasg-r-FGVt~~~L~-~a 1085 (1760)
.|++.+||+.|.-++ .|+.|+.++|+++..|.|+.+++++. .....|++..++ + ||||...-. +.
T Consensus 19 yPiiqgpMa~GiSs~----eLVaAVs~AGgLG~lgag~l~~e~l~--------~~I~~ir~~~~~~p~fGVNL~~~~~~~ 86 (444)
T TIGR02814 19 YAYVAGAMANGIASA----ELVIAMGRAGILGFFGAGGLPLEEVE--------QAIHRIQQALPGGPAYGVNLIHSPSDP 86 (444)
T ss_pred CcEECccccCCCCCH----HHHHHHHhCCceeeeCCCCCCHHHHH--------HHHHHHHHhcCCCCceEEEecccCCCc
Confidence 499999998776566 59999999999999999999999874 234556665444 6 999864211 11
Q ss_pred ----hhHHHhhhccCCCCC-CCCCCCccchHHHHHHhC-----CCCcccccCC-CCCCCCCCHHHH--------HHHHHH
Q 000265 1086 ----DELQIKMAQGAKPGE-GGELPGHKVIGDIAVTRN-----STAGVGLISP-PPHHDIYSIEDL--------AQLIYD 1146 (1760)
Q Consensus 1086 ----~~iqIKiaQGAKpGe-GG~Lpg~KV~~~IA~~R~-----~~pG~~lisP-~~hhDiySiedL--------aqlI~~ 1146 (1760)
+.+++-+..|.+--+ .+.+. +++.+...|. ...|. ...+ .-.+.+.+++.. ...|+.
T Consensus 87 ~~e~~~v~l~l~~~V~~veasa~~~---~~p~~v~~r~~G~~~~~~g~-~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~ 162 (444)
T TIGR02814 87 ALEWGLVDLLLRHGVRIVEASAFMQ---LTPALVRYRAKGLHRDADGR-VVIRNRLIAKVSRPEVAEAFMSPAPAHILQK 162 (444)
T ss_pred ccHHHHHHHHHHcCCCEEEeccccC---CCcchhhhhhcccccccccc-ccccceEEEecCCHHHHHHhcCCCcHHHHHH
Confidence 222332333332100 00000 0111101000 00000 0000 000011111111 123444
Q ss_pred HHHhCCCCceEEEEccccCHHHHHHHHHHcC-CCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHH---HHH-hCCC
Q 000265 1147 LKNANPGARISVKLVSEAGVGVIASGVVKGH-ADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQ---TLV-ANDL 1221 (1760)
Q Consensus 1147 Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaG-AD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q---~L~-~~gl 1221 (1760)
|++.. . + ...-|..+.+.| +|.|++. .++|+|... .|+...|+++.+ .+. ..+-
T Consensus 163 L~~~G-~----i-------t~eEA~~a~~~g~aD~Ivve-~EAGGHtg~--------~~~~~Llp~i~~lrd~v~~~~~y 221 (444)
T TIGR02814 163 LLAEG-R----I-------TREEAELARRVPVADDICVE-ADSGGHTDN--------RPLVVLLPAIIRLRDTLMRRYGY 221 (444)
T ss_pred HHHcC-C----C-------CHHHHHHHHhCCCCcEEEEe-ccCCCCCCC--------CcHHHHHHHHHHHHHHHhhcccC
Confidence 44331 0 0 012345577888 6999886 777777532 255566666643 331 1222
Q ss_pred CCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcc
Q 000265 1222 RGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGC 1262 (1760)
Q Consensus 1222 r~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc 1262 (1760)
..+|||+++|||.||++|+.|++|||++|++||.|+.+..|
T Consensus 222 ~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Es 262 (444)
T TIGR02814 222 RKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEA 262 (444)
T ss_pred CCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccc
Confidence 34699999999999999999999999999999999987655
No 101
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=99.17 E-value=1.3e-10 Score=144.16 Aligned_cols=116 Identities=26% Similarity=0.294 Sum_probs=87.8
Q ss_pred ccEEEEeecccCCCCCCCCCCCCce------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCC
Q 000265 322 SYMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSS 395 (1760)
Q Consensus 322 s~~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~S 395 (1760)
+.++|+|.|.|+...+. ..|||. .++|||||+|+...++.+.. .+. .+.+.|
T Consensus 40 ~~~~lgh~rl~i~d~~~--~~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~-------------------~g~-~~~~~~ 97 (467)
T TIGR01536 40 GNAILGHRRLAIIDLSG--GAQPMSNEGKTYVIVFNGEIYNHEELREELEA-------------------KGY-TFQTDS 97 (467)
T ss_pred CCEEEEEEEeEEeCCCC--CCCeeECCCCCEEEEEeeEEcCHHHHHHHHHh-------------------cCC-ccCCCC
Confidence 46899999999998742 499995 36999999998877765532 222 246899
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCC
Q 000265 396 DSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGL 473 (1760)
Q Consensus 396 DSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGL 473 (1760)
|+|++.++++. .| .++ ++.++|.|++++-|. +.+.++|||.|.
T Consensus 98 D~e~il~~y~~---~g---~~~-----------------------------~~~l~G~fa~~i~D~~~~~l~laRD~~G~ 142 (467)
T TIGR01536 98 DTEVILHLYEE---WG---EEC-----------------------------VDRLDGMFAFALWDSKKGELFLARDRFGI 142 (467)
T ss_pred HHHHHHHHHHH---HH---HHH-----------------------------HHHcCCcEEEEEEECCCCEEEEEECCCCC
Confidence 99999777542 22 122 234599998887655 666668999999
Q ss_pred CCceEEEEeCCEEEEEeccccc
Q 000265 474 RPGRFYITHSGRVIMASEVGVV 495 (1760)
Q Consensus 474 RPlr~~~t~d~~~i~ASE~gal 495 (1760)
||+ ||...++.+++|||..+|
T Consensus 143 kPL-yy~~~~~~~~faSe~kaL 163 (467)
T TIGR01536 143 KPL-YYAYDGGQLYFASEIKAL 163 (467)
T ss_pred cCe-EEEEECCEEEEEecHHHH
Confidence 999 888888999999997765
No 102
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.16 E-value=3.9e-10 Score=132.53 Aligned_cols=150 Identities=19% Similarity=0.158 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCCCCCC-----Ccccccc---ccCCC-
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDGGTGA-----SRWTGIK---NAGLP- 1204 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~GGTGa-----s~~~si~---~~GlP- 1204 (1760)
.+++.+.++|.++|+.. +.||+||+.+.. ....+|..+.++|+|+|+|+++-.|..- .+..... ..|.+
T Consensus 140 ~~~~~~~eiv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~ 218 (300)
T TIGR01037 140 QDPELSADVVKAVKDKT-DVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAI 218 (300)
T ss_pred cCHHHHHHHHHHHHHhc-CCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhh
Confidence 36788899999999886 789999996532 3455677899999999999865332100 0000000 01111
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhh
Q 000265 1205 WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL 1284 (1760)
Q Consensus 1205 ~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~L 1284 (1760)
+...+..+.+.... + ++|||+.|||.|+.|+.+++..|||+|++||+++. +|
T Consensus 219 ~~~~l~~v~~i~~~--~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~----------------------~p-- 270 (300)
T TIGR01037 219 KPIALRMVYDVYKM--V--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYY----------------------RG-- 270 (300)
T ss_pred hHHHHHHHHHHHhc--C--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhc----------------------Cc--
Confidence 11233444443222 2 48999999999999999999999999999999776 22
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000265 1285 REKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1285 r~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
.++..+.++|.++|...|+++++|++|+.
T Consensus 271 ------------~~~~~i~~~l~~~~~~~g~~~~~e~~g~~ 299 (300)
T TIGR01037 271 ------------FAFKKIIEGLIAFLKAEGFTSIEELIGIA 299 (300)
T ss_pred ------------hHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 35788999999999999999999999864
No 103
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.15 E-value=4.5e-10 Score=131.64 Aligned_cols=147 Identities=21% Similarity=0.272 Sum_probs=107.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCCCCCCC-----cccccc---ccCC--
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDGGTGAS-----RWTGIK---NAGL-- 1203 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~GGTGas-----~~~si~---~~Gl-- 1203 (1760)
.+++.+.+++..+|+.. +.||+||+.+.. .+..+|..+.++|||+|++.+...|..-. +..... ..|.
T Consensus 137 ~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~ 215 (296)
T cd04740 137 TDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAI 215 (296)
T ss_pred CCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCccc
Confidence 46788899999999886 899999996542 34566788999999999997654332100 000000 0111
Q ss_pred -C-HHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccC
Q 000265 1204 -P-WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQD 1281 (1760)
Q Consensus 1204 -P-~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqd 1281 (1760)
| ....+.++.+. + ++|||+.|||.|+.|+.+++++|||.|++||+++. +
T Consensus 216 ~~~~~~~i~~i~~~-----~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~----------------------~ 266 (296)
T cd04740 216 KPIALRMVYQVYKA-----V--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV----------------------D 266 (296)
T ss_pred chHHHHHHHHHHHh-----c--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc----------------------C
Confidence 1 11233333332 1 59999999999999999999999999999999776 2
Q ss_pred hhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000265 1282 PVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1282 p~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
|. ++..+.+++.++|...|+++++|++|+.
T Consensus 267 p~--------------~~~~i~~~l~~~~~~~g~~~~~~~~g~~ 296 (296)
T cd04740 267 PE--------------AFKEIIEGLEAYLDEEGIKSIEELVGLA 296 (296)
T ss_pred hH--------------HHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 22 5678899999999999999999998853
No 104
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.15 E-value=5.3e-10 Score=132.36 Aligned_cols=146 Identities=24% Similarity=0.260 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHH---HcCCCEEEEecC------------------CCCCCCCc
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVV---KGHADHVLISGH------------------DGGTGASR 1194 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aa---kaGAD~IvIsG~------------------~GGTGas~ 1194 (1760)
+++.+.+++..+|+.. +.||+||+.+...+..+|..+. +.|+|+|+.-+. ..+.|+-+
T Consensus 141 d~~~~~~i~~~v~~~~-~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlS 219 (310)
T PRK02506 141 DFETTEQILEEVFTYF-TKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIG 219 (310)
T ss_pred CHHHHHHHHHHHHHhc-CCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCC
Confidence 4788999999999886 7899999998777767766554 445565533221 11112222
Q ss_pred cccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCC
Q 000265 1195 WTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCP 1274 (1760)
Q Consensus 1195 ~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP 1274 (1760)
...++ | .+|..+++.... +..+++||+.|||.|++|+++.+++||++|+++|+++.-
T Consensus 220 G~~i~----p--~al~~v~~~~~~--~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~--------------- 276 (310)
T PRK02506 220 GDYIK----P--TALANVRAFYQR--LNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKE--------------- 276 (310)
T ss_pred chhcc----H--HHHHHHHHHHHh--cCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHh---------------
Confidence 22232 1 345555544433 234699999999999999999999999999999998861
Q ss_pred CcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000265 1275 VGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1275 ~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
+| .++..+.+||+++|...|+++++|++|+.
T Consensus 277 ------gp--------------~~~~~i~~~L~~~l~~~g~~si~e~~G~~ 307 (310)
T PRK02506 277 ------GP--------------AVFERLTKELKAIMAEKGYQSLEDFRGKL 307 (310)
T ss_pred ------Ch--------------HHHHHHHHHHHHHHHHhCCCCHHHHhChh
Confidence 11 25678999999999999999999999854
No 105
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=99.14 E-value=1.4e-10 Score=146.74 Aligned_cols=132 Identities=22% Similarity=0.252 Sum_probs=99.4
Q ss_pred EEEEeecccCCCCCCCCCCCCce------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChH
Q 000265 324 MALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDS 397 (1760)
Q Consensus 324 ~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDS 397 (1760)
++|+|.|.|+...+ ...|||. ++++||||+|+...++.+. .. ..+.+.||+
T Consensus 44 ~~lgh~RLsIid~~--~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~-------------------~~--~~f~t~sD~ 100 (554)
T PRK09431 44 AILGHERLSIVDVN--GGAQPLYNEDGTHVLAVNGEIYNHQELRAELG-------------------DK--YAFQTGSDC 100 (554)
T ss_pred eEEEEEEeeecCCC--CCCCCCCcCCCCEEEEEEEEEecHHHHHHHHh-------------------cc--CCcCCCCHH
Confidence 58999999999874 5799994 3699999998887766442 11 124789999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCCCC
Q 000265 398 GAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLRP 475 (1760)
Q Consensus 398 e~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGLRP 475 (1760)
|+|.++++. .| .+. ++..+|.|++++.|. +.+.++|||.|.||
T Consensus 101 Evil~ly~~---~G---~~~-----------------------------~~~L~G~FAf~i~D~~~~~l~laRD~~GikP 145 (554)
T PRK09431 101 EVILALYQE---KG---PDF-----------------------------LDDLDGMFAFALYDSEKDAYLIARDPIGIIP 145 (554)
T ss_pred HHHHHHHHH---HH---HHH-----------------------------HHhCCCceEEEEEECCCCEEEEEeCCCCCcc
Confidence 999877652 23 112 233599999888765 45566899999999
Q ss_pred ceEEEEeC-CEEEEEeccccccCCCCcEEEccccCCCcEEEEE
Q 000265 476 GRFYITHS-GRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVD 517 (1760)
Q Consensus 476 lr~~~t~d-~~~i~ASE~galdi~~~~vv~kgrl~PGeml~vd 517 (1760)
| ||+..+ +.+++|||.-+|--....|. +|.||..+.++
T Consensus 146 L-yy~~~~~~~~~faSE~kaL~~~~~~I~---~lpPGh~l~~~ 184 (554)
T PRK09431 146 L-YYGYDEHGNLYFASEMKALVPVCKTIK---EFPPGHYYWSK 184 (554)
T ss_pred e-EEEEeCCCeEEEecchHHHHHhcCCEE---EECCCeEEEEC
Confidence 9 888776 89999999998853445564 79999988765
No 106
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.13 E-value=1.6e-10 Score=127.04 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=81.0
Q ss_pred cEEEEeecccCCCCCCCCCCCCce------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCCh
Q 000265 323 YMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSD 396 (1760)
Q Consensus 323 ~~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SD 396 (1760)
.+.++|+|.+-...+ ..+|||. .++|||||+|+...+ .+.||
T Consensus 47 ~~~l~~~rL~i~~~~--~~~QP~~~~~~~~~lv~NGeIyN~~~l~------------------------------~s~sD 94 (181)
T cd03766 47 TLLFTSSVLSLRGDH--VTRQPLVDQSTGNVLQWNGELYNIDGVE------------------------------DEEND 94 (181)
T ss_pred EEEEEeeEEEecCCC--CCCCCCEeCCCCEEEEECCEEECccccc------------------------------CCCCH
Confidence 478999999998853 5699995 369999999754221 15899
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCCC
Q 000265 397 SGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLR 474 (1760)
Q Consensus 397 Se~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGLR 474 (1760)
||++.++++. .+.. .+++.. +++..+|+|++++.|. +.+.++|||.|.|
T Consensus 95 tEvi~~l~~~---~g~~-~~~i~~-------------------------~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~r 145 (181)
T cd03766 95 TEVIFELLAN---CSSE-SQDILD-------------------------VLSSIEGPFAFIYYDASENKLYFGRDCLGRR 145 (181)
T ss_pred HHHHHHHHHH---Hhhh-HHHHHH-------------------------HHHhcccceEEEEEeCCCCEEEEEECCCCCc
Confidence 9999888653 2211 122221 1345699999888765 6677799999999
Q ss_pred CceEEEEe--CCEEEEEeccccc
Q 000265 475 PGRFYITH--SGRVIMASEVGVV 495 (1760)
Q Consensus 475 Plr~~~t~--d~~~i~ASE~gal 495 (1760)
|| ||... ++.+++||+.+..
T Consensus 146 PL-~y~~~~~~~~l~~aS~~~~~ 167 (181)
T cd03766 146 SL-LYKLDPNGFELSISSVSGSS 167 (181)
T ss_pred Cc-EEEeeCCCCcEEEEEccCCC
Confidence 99 77766 7889999997643
No 107
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.12 E-value=6e-10 Score=138.43 Aligned_cols=182 Identities=20% Similarity=0.171 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+.+.++|.++|+.+|+.+|+.--+ .....|..+.++|||+|.|-=..|.-+.++. ....|.|...++.++.++..
T Consensus 253 ~~~~~~i~~ik~~~p~~~v~agnv---~t~~~a~~l~~aGad~v~vgig~gsictt~~--~~~~~~p~~~av~~~~~~~~ 327 (479)
T PRK07807 253 EKMLEALRAVRALDPGVPIVAGNV---VTAEGTRDLVEAGADIVKVGVGPGAMCTTRM--MTGVGRPQFSAVLECAAAAR 327 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEeecc---CCHHHHHHHHHcCCCEEEECccCCccccccc--ccCCchhHHHHHHHHHHHHH
Confidence 456788999999999999988654 3346678899999999988333333333332 34568899999999999865
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcccc---c----cccc---------------------
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIM---M----RKCH--------------------- 1269 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~---~----r~ch--------------------- 1269 (1760)
.. .+|||++|||+++.|++||+++||++|++|+.|+-+..+.. . +.+-
T Consensus 328 ~~----~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~ 403 (479)
T PRK07807 328 EL----GAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAF 403 (479)
T ss_pred hc----CCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchh
Confidence 53 48999999999999999999999999999998875543211 0 0000
Q ss_pred ----cCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCceeeccc
Q 000265 1270 ----KNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDK 1332 (1760)
Q Consensus 1270 ----~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dLl~~~~ 1332 (1760)
...-|-||..+-|.+ ..+ .-.|..++..+...||..|..+|.++|.||..+..+++.+.
T Consensus 404 ~~~~~~~~~eGv~~~~~~~-~~~---~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~~~~~~~t~ 466 (479)
T PRK07807 404 DRARKALFEEGISTSRMYL-DPG---RPGVEDLLDHITSGVRSSCTYAGARTLAEFHERAVVGVQSA 466 (479)
T ss_pred hhcccCCCCCCccceeeec-cCC---CCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhCCEEEEECc
Confidence 000111111111100 000 11277888999999999999999999999988888887753
No 108
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=99.11 E-value=3e-10 Score=144.83 Aligned_cols=117 Identities=23% Similarity=0.244 Sum_probs=87.0
Q ss_pred ccEEEEeecccCCCCCCCCCCCCce------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCC
Q 000265 322 SYMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSS 395 (1760)
Q Consensus 322 s~~ai~H~RySTNT~psw~~AQPfr------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~S 395 (1760)
+.++|+|+|+|+.... -...|||. .++|||||+|+...++.+. ..+. .+.+.|
T Consensus 41 ~~~~lgh~rl~i~~~~-~~~~QP~~~~~~~~~~v~nGeiyN~~eL~~~l~-------------------~~g~-~f~~~s 99 (589)
T TIGR03104 41 GPVALGHRRLKIIDLS-EASQQPMVDAELGLALVFNGCIYNYRELRAELE-------------------ALGY-RFFSDG 99 (589)
T ss_pred CCEEEEEEeeEecCCC-cCCCCCeECCCCCEEEEECCEecCHHHHHHHHH-------------------hcCC-cccCCC
Confidence 4589999999998753 36799995 3799999998877766443 2232 246899
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCCc--eEEEccCCCCC
Q 000265 396 DSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGR--YLGATLDRNGL 473 (1760)
Q Consensus 396 DSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG~--~igA~lDrnGL 473 (1760)
|+|++.++++. .| .++ ++..+|.|++++-|.+ .+.++|||.|.
T Consensus 100 D~Evil~~y~~---~G---~~~-----------------------------~~~l~G~fa~~i~d~~~~~l~laRD~~G~ 144 (589)
T TIGR03104 100 DTEVILKAYHA---WG---RDC-----------------------------VSRFNGMFAFAIWERDSGRLLLARDRLGI 144 (589)
T ss_pred HHHHHHHHHHH---HH---HHH-----------------------------HHHhhcceEEEEEeCCCCEEEEEecCCCC
Confidence 99999777542 22 111 2335999988775553 56668999999
Q ss_pred CCceEEEEeCCEEEEEeccccc
Q 000265 474 RPGRFYITHSGRVIMASEVGVV 495 (1760)
Q Consensus 474 RPlr~~~t~d~~~i~ASE~gal 495 (1760)
||| ||...++.+++|||..+|
T Consensus 145 kPL-yy~~~~~~~~faSe~kaL 165 (589)
T TIGR03104 145 KPL-YYAEDAGRLRFASSLPAL 165 (589)
T ss_pred CCe-EEEEeCCEEEEEeCHHHH
Confidence 999 888888899999997665
No 109
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=99.06 E-value=7.7e-10 Score=142.16 Aligned_cols=139 Identities=27% Similarity=0.330 Sum_probs=98.7
Q ss_pred ccEEEEeecccCCCCCCCCCCCCcee------eeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCC
Q 000265 322 SYMALIHSRFSTNTFPSWDRAQPMRI------LGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSS 395 (1760)
Q Consensus 322 s~~ai~H~RySTNT~psw~~AQPfr~------laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~S 395 (1760)
+.++|+|.|+|+... . ..+||+.. ++|||||+|+...++-+ +..+. .+.+.|
T Consensus 42 ~~~~lgh~rl~i~d~-~-~~~qP~~~~~~~~~lv~nGei~N~~eL~~~l-------------------~~~g~-~~~~~s 99 (628)
T TIGR03108 42 PGIGLGHRRLSIIDL-S-GGQQPLFNEDGSVVVVFNGEIYNFQELVAEL-------------------QALGH-VFRTRS 99 (628)
T ss_pred CCEEEEEEeeeecCC-C-CCCCCcCcCCCCEEEEECCeECCHHHHHHHH-------------------HhcCC-ccCCCC
Confidence 358999999999875 3 68999853 69999999887776543 33333 247899
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCC
Q 000265 396 DSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGL 473 (1760)
Q Consensus 396 DSe~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGL 473 (1760)
|||++.++++. .| .++ ++..+|.|++++.|. +.+.++|||.|.
T Consensus 100 D~Evi~~~~~~---~g---~~~-----------------------------~~~l~G~fa~~~~d~~~~~l~~~rD~~G~ 144 (628)
T TIGR03108 100 DTEVIVHAWEE---WG---EAC-----------------------------VERFRGMFAFALWDRNQETLFLARDRLGI 144 (628)
T ss_pred hHHHHHHHHHH---HH---HHH-----------------------------HHHcCCCEEEEEEECCCCEEEEEECCCCC
Confidence 99999877642 22 111 234599998887553 456668999999
Q ss_pred CCceEEEE-eCCEEEEEecccccc-CC----------------------C----CcEEEccccCCCcEEEEEcCCC
Q 000265 474 RPGRFYIT-HSGRVIMASEVGVVD-IP----------------------P----EDVLRKGRLNPGMMLLVDFEKR 521 (1760)
Q Consensus 474 RPlr~~~t-~d~~~i~ASE~gald-i~----------------------~----~~vv~kgrl~PGeml~vd~~~g 521 (1760)
||| ||.. .++.+++|||..++- .+ + ..| .+|.||..+.++..++
T Consensus 145 ~PL-yy~~~~~~~~~faSe~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI---~~l~pG~~l~~~~~~~ 216 (628)
T TIGR03108 145 KPL-YYALLADGWFIFGSELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGV---KKLEPGHTLTLRRGAP 216 (628)
T ss_pred cce-EEEEeCCCEEEEEecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchhcCc---EEECCCeEEEEECCCc
Confidence 999 7775 467899999987662 11 0 123 2799999998886543
No 110
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=98.99 E-value=1.7e-09 Score=136.48 Aligned_cols=138 Identities=22% Similarity=0.209 Sum_probs=103.7
Q ss_pred cEEEEeecccCCCCCCCCCCCCcee------eeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCCh
Q 000265 323 YMALIHSRFSTNTFPSWDRAQPMRI------LGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSD 396 (1760)
Q Consensus 323 ~~ai~H~RySTNT~psw~~AQPfr~------laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SD 396 (1760)
.++++|.|.|.-...+ ..||+.. +++||||+|+...++.+.. .+.. |.+.||
T Consensus 42 ~~~~gh~rL~i~d~~~--g~QP~~~~~~~~~l~~NGEIYN~~elr~~l~~-------------------~g~~-f~t~sD 99 (542)
T COG0367 42 NALLGHRRLSIVDLSG--GRQPMIKEGGKYAIVYNGEIYNVEELRKELRE-------------------AGYE-FRTYSD 99 (542)
T ss_pred CceeeeeEEEEecccc--CCCCcccCCCcEEEEECCEeeeHHHHHHHHHh-------------------cCce-eccccc
Confidence 5799999999999886 8999964 6999999988777765432 2333 578999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEec--CCceEEEccCCCCCC
Q 000265 397 SGAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFT--DGRYLGATLDRNGLR 474 (1760)
Q Consensus 397 Se~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~t--dG~~igA~lDrnGLR 474 (1760)
||+|.++++.. |. ++ .+.++|-++++.- +.+.+..+|||.|.|
T Consensus 100 tEvil~~y~~~---g~---~~-----------------------------~~~l~G~fAfai~d~~~~~l~laRD~~Gik 144 (542)
T COG0367 100 TEVILTLYEEW---GE---DC-----------------------------VEHLNGMFAFAIYDETRQKLFLARDPFGVK 144 (542)
T ss_pred hHHHHHHHHHH---HH---HH-----------------------------HHHhccceEEEEEECCCCEEEEEecCCCcc
Confidence 99998876532 21 12 2335899776653 344566689999999
Q ss_pred CceEEEEeCCEEEEEeccccccCC-----CCcEEEccccCCCcEEEEEcCCC
Q 000265 475 PGRFYITHSGRVIMASEVGVVDIP-----PEDVLRKGRLNPGMMLLVDFEKR 521 (1760)
Q Consensus 475 Plr~~~t~d~~~i~ASE~galdi~-----~~~vv~kgrl~PGeml~vd~~~g 521 (1760)
|| ||..+++.+++|||..++--. -.+|. +|.||..+.++..+.
T Consensus 145 PL-yy~~~~~~l~faSE~Kal~~~~~~~~~~~i~---~l~pg~~l~~~~~~~ 192 (542)
T COG0367 145 PL-YYTSKNENLAFASEIKALLAHPVVRFLRDIK---ELPPGHLLEFTDGGL 192 (542)
T ss_pred cc-EEEecCCceEEEechhhhhhCCcccccCCeE---EcCCCcEEEEcCCCc
Confidence 99 899888889999999998322 23443 799999999987664
No 111
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.93 E-value=7.6e-09 Score=127.23 Aligned_cols=153 Identities=20% Similarity=0.145 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCCC-C--------CCCccc----cccc
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDGG-T--------GASRWT----GIKN 1200 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~GG-T--------Gas~~~----si~~ 1200 (1760)
..++.+.+++..+|+.. +.||+||+.+.. .+..+|..+.++|||+|++.+.-.+ . +...+. .--.
T Consensus 151 ~~~~~~~~i~~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~ 229 (420)
T PRK08318 151 QVPELVEMYTRWVKRGS-RLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGY 229 (420)
T ss_pred CCHHHHHHHHHHHHhcc-CCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccc
Confidence 45788899999999875 799999998753 5677888899999999996544322 0 000000 0001
Q ss_pred cCCCH-HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccc
Q 000265 1201 AGLPW-ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIAT 1279 (1760)
Q Consensus 1201 ~GlP~-~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giat 1279 (1760)
.|.+. ..+|..+++.....+. .++|||+.|||.|++|+++.+..||++|++||++++-
T Consensus 230 SG~a~~p~~l~~v~~~~~~~~~-~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~-------------------- 288 (420)
T PRK08318 230 CGPAVKPIALNMVAEIARDPET-RGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQY-------------------- 288 (420)
T ss_pred cchhhhHHHHHHHHHHHhcccc-CCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccC--------------------
Confidence 13221 1234444443222111 2699999999999999999999999999999997761
Q ss_pred cChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCC
Q 000265 1280 QDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGR 1324 (1760)
Q Consensus 1280 qdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr 1324 (1760)
+ + .++..|..||+.+|...|+.++.|++|.
T Consensus 289 -g----------p----~ii~~I~~~L~~~l~~~g~~si~e~iG~ 318 (420)
T PRK08318 289 -G----------F----RIVEDMISGLSHYMDEKGFASLEDMVGL 318 (420)
T ss_pred -C----------c----hhHHHHHHHHHHHHHHcCcchHHHHhcc
Confidence 1 1 1467789999999999999999999885
No 112
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.93 E-value=9.2e-10 Score=128.14 Aligned_cols=191 Identities=23% Similarity=0.261 Sum_probs=84.4
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCce--------eeeccccc
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR--------ILGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr--------~laHNGEI 354 (1760)
++++|+..+++.. +||...-+.+=.. +. -|.+..++|.+.|.|+|.+|.+..+-.|+|||+ +.||||.|
T Consensus 34 DGwGiawy~~~~~~~~k~~~pa~~~~~-~~-~l~~~~i~S~~~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i 111 (271)
T PF13230_consen 34 DGWGIAWYDGGGPRVFKSPRPAWNSPN-LR-LLADYKIRSRLFLAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTI 111 (271)
T ss_dssp --EEEEEESSSS-EEEEESS-CCC-HH-HH-HHHH-H-EEEEEEEEE------------SS-EE----ETTEEEEEEEEE
T ss_pred CeeEEEEEeCCeEEEEECCCCCcCCch-HH-HHhhCCccCCEEEEEecccCCCCCCcccCCCceeccCCCcEEEEeCCcc
Confidence 4589999888776 9998754332211 11 122224789999999999999999999999997 36999999
Q ss_pred cChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHH-HHHHHcCCCHHHHHHHcCccccccCCCCC
Q 000265 355 NTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVL-ELLVRAGRSLPEAVMMMIPEAWQNDKNMD 433 (1760)
Q Consensus 355 nt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~L-e~l~~~g~sl~eAi~~~iPeaw~~~~~m~ 433 (1760)
..+...+ ...+. ..+.||||.+-.+| ..|...+.+-+.++..+
T Consensus 112 ~~f~~~~----------------------~~~~~--~~G~TDSE~~F~lll~~l~~~~~~~~~~~~~~------------ 155 (271)
T PF13230_consen 112 PGFEDIL----------------------DDRYQ--PVGTTDSEHAFCLLLDQLRDRGPDAPPALEEL------------ 155 (271)
T ss_dssp TTGGGGH----------------------HHHHT----S--HHHHHHHHHHHTTTTT-HH--HHHHHH------------
T ss_pred ccccccC----------------------ccccc--cCCCcHHHHHHHHHHHHHHHhCCcccccHHHH------------
Confidence 8765333 01111 25899999885542 21111110001111111
Q ss_pred HHHHHHHHHHHhccCCCCCCcEEEecCCceEEEccCCC----CCC-Cc------------eE---EEEeCCEEEEEeccc
Q 000265 434 PQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRN----GLR-PG------------RF---YITHSGRVIMASEVG 493 (1760)
Q Consensus 434 ~e~rafYey~s~lmepwdGPa~iv~tdG~~igA~lDrn----GLR-Pl------------r~---~~t~d~~~i~ASE~g 493 (1760)
.+..-++...+-+ .|++-++++||+.+.|.+++. -.+ |. .+ ....+..++||||-
T Consensus 156 --~~~l~~~~~~~~~--~~~~N~~lsDG~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSeP- 230 (271)
T PF13230_consen 156 --FEALRELAKEINE--YGSLNFLLSDGERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASEP- 230 (271)
T ss_dssp --HHHHHHHHHS-SS--SEEEEEEEE-SS-EEEEEEESSS----------------------EEEEETTTTEEEEESS--
T ss_pred --HHHHHHHHHHhcc--CeeEEEEEECCceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEecc-
Confidence 1222333333221 356678999999999988832 011 11 00 11235688999995
Q ss_pred cccCCCCcEEEccccCCCcEEEEEcCCCEEe
Q 000265 494 VVDIPPEDVLRKGRLNPGMMLLVDFEKRIVV 524 (1760)
Q Consensus 494 aldi~~~~vv~kgrl~PGeml~vd~~~g~i~ 524 (1760)
+...+-|+ .|.||++++|+ .|+++
T Consensus 231 ---Lt~~e~W~--~vp~g~~l~~~--~G~v~ 254 (271)
T PF13230_consen 231 ---LTDDEDWE--PVPPGSLLVFR--DGEVV 254 (271)
T ss_dssp ------SS--E--E--SSEEEE---------
T ss_pred ---CCCCCCeE--EcCCCcEEEEe--ccccc
Confidence 33344554 79999999886 46655
No 113
>COG0070 GltB Glutamate synthase domain 3 [Amino acid transport and metabolism]
Probab=98.93 E-value=2.7e-09 Score=124.32 Aligned_cols=117 Identities=26% Similarity=0.397 Sum_probs=102.9
Q ss_pred EEEEEecCccchhhhcCCCCcEEEEEec------CC----chhhcCCCCceEEEeCCCCCCCCCCccccchhhhhccCcc
Q 000265 1429 IHIKLTGSAGQSVGAFLCPGILLELEGD------SN----DYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATS 1498 (1760)
Q Consensus 1429 i~i~~~G~aGq~~Gaf~~~G~~i~v~G~------A~----DyvGkgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGatg 1498 (1760)
++|+++|+|+.++|--| .|++|+|+|+ +| |.|+-|+.||+|.|+|++ |.-++-=|+|
T Consensus 103 ~~l~l~GdAnDyvGkgm-sgG~IVV~~~~~~~~~~~~i~Gn~~lyGatgG~~fi~G~A------------GeRfaVrnsG 169 (301)
T COG0070 103 PTLELNGDANDYVGKGM-SGGKIVVRGPARFKAEANIIVGNTVLYGATGGELFIRGNA------------GERFGVRNSG 169 (301)
T ss_pred CEEEEEeccCCcccCCC-CCcEEEEECCCcccccCCceecceEEEeccCcEEEEecCc------------eeeEEEEccC
Confidence 56888999999999999 7889999999 99 999999999999999995 5555667899
Q ss_pred cEEEEecccccccccccCCcEEEEcC-CCccccccccCcEEEEeCCCCCcccCCCcceEEEE
Q 000265 1499 GEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYV 1559 (1760)
Q Consensus 1499 G~i~v~G~aGeR~gvr~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~~~gagM~gG~iyv 1559 (1760)
+.+.|.|. |+..|.-|.||.+||=| +|...|.-|+||.+-|+|..|..|-.+-.--++-+
T Consensus 170 ~~~VVeG~-GD~~cEYMtGG~VvVLG~~G~nfgaGMsGG~aYV~~~~~~~f~~~~n~~~ve~ 230 (301)
T COG0070 170 ATAVVEGI-GDHGCEYMTGGRVVVLGDTGRNFGAGMSGGVAYVRGEVGSDFPLGVNAELVEL 230 (301)
T ss_pred ceEEEecc-CcceecccCCCEEEEeCCcchhhcCcccceEEEEecCccchhhcCccceEEEe
Confidence 99999999 99999999999999988 58779999999999999999976666655555655
No 114
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.90 E-value=9.3e-10 Score=137.49 Aligned_cols=60 Identities=47% Similarity=0.877 Sum_probs=57.8
Q ss_pred CcccCccccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCCCCcccCCCCCCC
Q 000265 1700 KHRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF 1760 (1760)
Q Consensus 1700 k~~gF~~~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG~PfC~~~~gCPl 1760 (1760)
|+.||++|+|+.++++++++|++||+|++.++ +.++|+.||+||++|+.|+|+.+++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rc~~c~~~~C~~~~~CP~ 60 (485)
T TIGR01317 1 KPTGFLEYKRRKPTERDPRTRLKDWKEFTNPF-DKESAKYQAARCMDCGTPFCHNDSGCPL 60 (485)
T ss_pred CCCCcceecccCcCcCCHHHHhhCHHHHhCCC-CHHHHHHHHHhccCCCCCCCCCCCCCCC
Confidence 47899999999999999999999999999999 9999999999999999999999788996
No 115
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.89 E-value=1.6e-08 Score=121.57 Aligned_cols=145 Identities=18% Similarity=0.187 Sum_probs=99.1
Q ss_pred CCCCHHHHHHHHHHHHHhCC----CCceEEEEccccC---HHHHHHHHHHcCCCEEEEecCCCCCC-CCccc-cccc---
Q 000265 1133 DIYSIEDLAQLIYDLKNANP----GARISVKLVSEAG---VGVIASGVVKGHADHVLISGHDGGTG-ASRWT-GIKN--- 1200 (1760)
Q Consensus 1133 DiySiedLaqlI~~Lk~~~p----~~pV~VKlv~~~G---vg~iA~~aakaGAD~IvIsG~~GGTG-as~~~-si~~--- 1200 (1760)
+...++.+.+++..+|+... +.||+||+.+... +..+|..+.++|||+|+++|..-... ..... ....
T Consensus 187 ~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~ 266 (344)
T PRK05286 187 DLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGL 266 (344)
T ss_pred cccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCc
Confidence 34567888999999998864 3899999986543 56678889999999999988531000 00000 0000
Q ss_pred cCCCH-HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccc
Q 000265 1201 AGLPW-ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIAT 1279 (1760)
Q Consensus 1201 ~GlP~-~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giat 1279 (1760)
.|.|. ...|..+.+.... ++.+++|++.|||.|+.|+.+++..|||+|++||++++-
T Consensus 267 SG~~~~~~~l~~v~~l~~~--~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~-------------------- 324 (344)
T PRK05286 267 SGRPLFERSTEVIRRLYKE--LGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYE-------------------- 324 (344)
T ss_pred ccHHHHHHHHHHHHHHHHH--hCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHh--------------------
Confidence 11110 1223333332222 344699999999999999999999999999999998861
Q ss_pred cChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 000265 1280 QDPVLREKFAGEPEHVINFFFMLAEELREIMSQLG 1314 (1760)
Q Consensus 1280 qdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG 1314 (1760)
+|. ++..+.+||+++|...|
T Consensus 325 -gP~--------------~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 325 -GPG--------------LVKEIVRGLARLLRRDG 344 (344)
T ss_pred -Cch--------------HHHHHHHHHHHHHHhcC
Confidence 122 46778899999998765
No 116
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.75 E-value=3.9e-08 Score=116.07 Aligned_cols=118 Identities=18% Similarity=0.089 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecCCCCC-C-----CCccc-------cccc
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGHDGGT-G-----ASRWT-------GIKN 1200 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~~GGT-G-----as~~~-------si~~ 1200 (1760)
.+++.+.+++..+|+.. +.||+||+.+.. .+..+|..+.++|||+|++.++-.+. + ..+.. .--.
T Consensus 151 ~~~~~~~~iv~~v~~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~ 229 (299)
T cd02940 151 QDPELVEEICRWVREAV-KIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGY 229 (299)
T ss_pred cCHHHHHHHHHHHHHhc-CCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcc
Confidence 45788999999999876 799999997643 55678888999999999987654331 0 00000 0001
Q ss_pred cCCCH----HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1201 AGLPW----ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1201 ~GlP~----~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
.|.+. ...+.++++.+ ..+++||++|||.|++|+++++++||++|++||+++.
T Consensus 230 sG~a~~p~~l~~v~~~~~~~-----~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 230 SGPAVKPIALRAVSQIARAP-----EPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred cCCCcchHHHHHHHHHHHhc-----CCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 12221 23444444442 2369999999999999999999999999999999776
No 117
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=98.75 E-value=2.8e-08 Score=111.01 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=85.6
Q ss_pred CCCce----eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcCCCHHHH
Q 000265 342 AQPMR----ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEA 417 (1760)
Q Consensus 342 AQPfr----~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~sl~eA 417 (1760)
.|+++ .++.||||+|+...+..+. ..+. .+.+.||+|++.++++ +.|. ++
T Consensus 44 ~~~~~~~~~~iv~NGEIYN~~eLr~~L~-------------------~~g~-~f~t~sDtEvll~~y~---~~G~---~~ 97 (199)
T cd01909 44 VQVARSETGTAYLIGELYNRDELRSLLG-------------------AGEG-RSAVLGDAELLLLLLT---RLGL---HA 97 (199)
T ss_pred eeEeeCCCEEEEEEEEEeCHHHHHHHHH-------------------hcCC-CcCCCCHHHHHHHHHH---HHhH---HH
Confidence 55553 4799999998877765442 2222 2478999999987754 3342 23
Q ss_pred HHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC-ceEEEccCCCCCCCceEEEEeCCEEEEEecccccc
Q 000265 418 VMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG-RYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVD 496 (1760)
Q Consensus 418 i~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG-~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~gald 496 (1760)
+. ..+|-|++++-|. +.+.++|||.|.||| ||... +.+++|||.-+|-
T Consensus 98 l~-----------------------------~L~G~FAfai~D~~~~L~laRDr~GikPL-Yy~~~-~~l~FASEikaLl 146 (199)
T cd01909 98 FR-----------------------------LAEGDFCFFIEDGNGRLTLATDHAGSVPV-YLVQA-GEVWATTELKLLA 146 (199)
T ss_pred HH-----------------------------HcCEEEEEEEEcCCCEEEEEECCCCCcCe-EEEEC-CeEEEEeCHHHHh
Confidence 33 3499998887665 656668999999999 88776 8999999998882
Q ss_pred -CC-----------CC--cEEE-ccccCCCcEEEEEcCCCE
Q 000265 497 -IP-----------PE--DVLR-KGRLNPGMMLLVDFEKRI 522 (1760)
Q Consensus 497 -i~-----------~~--~vv~-kgrl~PGeml~vd~~~g~ 522 (1760)
.+ +. .+.+ =.+|.||.++.++.++++
T Consensus 147 a~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l~~~~~g~~ 187 (199)
T cd01909 147 AHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVNVLTFDGGS 187 (199)
T ss_pred hCcCCCcccCcccCCCCCChhcCceEECCCcEEEEeeCCcc
Confidence 10 11 1110 137999999999888553
No 118
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=98.74 E-value=5.2e-08 Score=116.81 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHHhCC------CCceEEEEcccc---CHHHHHHHHHHcCCCEEEEecCCC------------CCCC
Q 000265 1134 IYSIEDLAQLIYDLKNANP------GARISVKLVSEA---GVGVIASGVVKGHADHVLISGHDG------------GTGA 1192 (1760)
Q Consensus 1134 iySiedLaqlI~~Lk~~~p------~~pV~VKlv~~~---Gvg~iA~~aakaGAD~IvIsG~~G------------GTGa 1192 (1760)
....+.+.+++..+|+... +.||+||+.+.. .+..+|..+.++|||+|++.+.-- +.|+
T Consensus 185 ~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GG 264 (335)
T TIGR01036 185 LQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGG 264 (335)
T ss_pred ccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCc
Confidence 4456888899999887642 389999998875 377888889999999999876421 2222
Q ss_pred CccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1193 SRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1193 s~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
-+...++. .+|..+.+.... +..+++||+.|||.|+.|+++++++||++|++||++++
T Consensus 265 lSG~~i~p------~al~~v~~~~~~--~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 265 LSGKPLQD------KSTEIIRRLYAE--LQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred ccCHHHHH------HHHHHHHHHHHH--hCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 22222221 344444444332 33479999999999999999999999999999999886
No 119
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.70 E-value=1.9e-07 Score=110.10 Aligned_cols=120 Identities=16% Similarity=0.091 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHHH---HHHHHHHc--CCCEEEEecCCCCC------CCCccc--cccccC
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGV---IASGVVKG--HADHVLISGHDGGT------GASRWT--GIKNAG 1202 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~---iA~~aaka--GAD~IvIsG~~GGT------Gas~~~--si~~~G 1202 (1760)
+++.+.+++..+|+.. +.||+||+.+...... +|..+.++ |+|+|++.+.-+.. ...+.. ....-|
T Consensus 141 ~~~~~~~i~~~v~~~~-~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG 219 (294)
T cd04741 141 DFDATLEYLTAVKAAY-SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGG 219 (294)
T ss_pred CHHHHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCC
Confidence 5788899999999886 7999999987654433 44445567 99999975443210 011100 011123
Q ss_pred CC----HHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1203 LP----WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1203 lP----~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+. -..+|..+++.... +..++|||+.|||.|++|+++.+..||++|++||+++.
T Consensus 220 ~SG~~i~~~al~~v~~~~~~--~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~ 277 (294)
T cd04741 220 LAGAYLHPLALGNVRTFRRL--LPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK 277 (294)
T ss_pred cCchhhHHHHHHHHHHHHHh--cCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence 32 12345445543322 23369999999999999999999999999999999875
No 120
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=98.70 E-value=2.3e-08 Score=120.75 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=95.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCCeE-EEEcccchhchhhhh---cccCCCCCccccEEEEee
Q 000265 254 KVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLSSRTV-VYKGQLKPIQMKDYY---YADLGNERFTSYMALIHS 329 (1760)
Q Consensus 254 ~~~fer~Ly~lRk~~e~~i~~~~~~~~~~~~~~yI~SlS~~ti-vyKG~g~~~qv~~~y---~~DL~~~~~~s~~ai~H~ 329 (1760)
..+.-..|+.=++++ +.+-+.. .+|.|...+.+++ .||+.|.+.-+.+.. .+|| ++.|.++++|.|+
T Consensus 16 R~eIid~Li~GLqRL----EYRGYDS----aGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l-~~~f~sH~gIAHT 86 (670)
T KOG1268|consen 16 RGEIIDTLIDGLQRL----EYRGYDS----AGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNL-DEKFISHCGIAHT 86 (670)
T ss_pred HHHHHHHHHHHHHHh----hccCCCC----CceeecCCcccchhhhcccCceeehhHHHhhcCccc-ceeeeeeeeeeee
Confidence 345556678888888 5443322 3456655555665 999999988775432 1244 5679999999999
Q ss_pred cccCCCCCCCCCCCCce-------eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHH
Q 000265 330 RFSTNTFPSWDRAQPMR-------ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDG 402 (1760)
Q Consensus 330 RySTNT~psw~~AQPfr-------~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~ 402 (1760)
|++|-+-|+-.|.||+| ..+|||=|+||++.+..+..|. -. |++.+|||++..
T Consensus 87 RWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG-------------------~~-FESdTDTEciaK 146 (670)
T KOG1268|consen 87 RWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKG-------------------YV-FESDTDTECIAK 146 (670)
T ss_pred ehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcC-------------------ce-eecccchHHHHH
Confidence 99999999999999999 3699999999999988775433 22 467999999999
Q ss_pred HHHHHHH
Q 000265 403 VLELLVR 409 (1760)
Q Consensus 403 ~Le~l~~ 409 (1760)
+..++..
T Consensus 147 L~~~~~D 153 (670)
T KOG1268|consen 147 LYKHIYD 153 (670)
T ss_pred HHHHHHh
Confidence 8876655
No 121
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.61 E-value=1.3e-07 Score=113.18 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHHHhCC----CCceEEEEcccc---CHHHHHHHHHHcCCCEEEEecCCCCCCCCcccccc-----cc
Q 000265 1134 IYSIEDLAQLIYDLKNANP----GARISVKLVSEA---GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIK-----NA 1201 (1760)
Q Consensus 1134 iySiedLaqlI~~Lk~~~p----~~pV~VKlv~~~---Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~-----~~ 1201 (1760)
...++.+.+++..+|+... +.||+||+.+.. .+..+|..+.++|||+|++.+.--+.-........ ..
T Consensus 179 ~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~s 258 (327)
T cd04738 179 LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLS 258 (327)
T ss_pred ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccC
Confidence 4567888999999998753 389999997654 35567788999999999998742110000000000 00
Q ss_pred CCCH-HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1202 GLPW-ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1202 GlP~-~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
|.+. ..++..+.+.... ++.+++|++.|||+|+.|+.++++.|||+|++||+++.
T Consensus 259 G~~~~~~~l~~v~~l~~~--~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~ 314 (327)
T cd04738 259 GAPLKERSTEVLRELYKL--TGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY 314 (327)
T ss_pred ChhhhHHHHHHHHHHHHH--hCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh
Confidence 1111 1233334333222 33469999999999999999999999999999999886
No 122
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=98.51 E-value=3e-07 Score=108.28 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=72.5
Q ss_pred CCCHHHH-HHHHHHHHHhCCCCceEEEEcccc-CHHH--HHHHHHHcCCCEEEEecCCC----------------CCCCC
Q 000265 1134 IYSIEDL-AQLIYDLKNANPGARISVKLVSEA-GVGV--IASGVVKGHADHVLISGHDG----------------GTGAS 1193 (1760)
Q Consensus 1134 iySiedL-aqlI~~Lk~~~p~~pV~VKlv~~~-Gvg~--iA~~aakaGAD~IvIsG~~G----------------GTGas 1193 (1760)
+...+++ ..++..+|... +.||+||+.+.. .+.. .+..+.+.|+|+|++.+.-. +.|+-
T Consensus 143 ~~~~~~~~~~i~~~v~~~~-~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGl 221 (295)
T PF01180_consen 143 FGQDPELVAEIVRAVREAV-DIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGL 221 (295)
T ss_dssp GGGHHHHHHHHHHHHHHHH-SSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEE
T ss_pred cccCHHHHHHHHHHHHhcc-CCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCc
Confidence 3334444 45666666664 899999998843 3333 34445688999998533211 11111
Q ss_pred ccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1194 RWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1194 ~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+...++ ..+|..+++.... +..+++||+.|||.|++|+++++++||++|+++|++++
T Consensus 222 SG~~i~------p~aL~~V~~~~~~--~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~ 278 (295)
T PF01180_consen 222 SGPAIR------PIALRWVRELRKA--LGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIY 278 (295)
T ss_dssp EEGGGH------HHHHHHHHHHHHH--TTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHH
T ss_pred Cchhhh------hHHHHHHHHHHhc--cccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhh
Confidence 111111 2355555554443 33579999999999999999999999999999999876
No 123
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.50 E-value=6.9e-07 Score=104.57 Aligned_cols=121 Identities=21% Similarity=0.138 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccC---HHHHHHHHHHcCCCEEEEecCCCCCCCCc-----cccccccCCC--
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAG---VGVIASGVVKGHADHVLISGHDGGTGASR-----WTGIKNAGLP-- 1204 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~G---vg~iA~~aakaGAD~IvIsG~~GGTGas~-----~~si~~~GlP-- 1204 (1760)
.+++.+.+++..+|+.. +.||+||+.+... +..++..+.++|||+|++.|...+.-... .....+.|+.
T Consensus 145 ~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~ 223 (289)
T cd02810 145 QDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGA 223 (289)
T ss_pred cCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcH
Confidence 35678899999999876 8999999976543 34567778999999999987643321100 0001112221
Q ss_pred HH--HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1205 WE--LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1205 ~~--~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+. .++..+.+.... +..+++|++.|||.|+.|+.+++++|||+|++||+++.
T Consensus 224 ~~~~~~~~~v~~i~~~--~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 224 PIRPLALRWVARLAAR--LQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred HHHHHHHHHHHHHHHh--cCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 11 123333332222 22369999999999999999999999999999999886
No 124
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.48 E-value=2.1e-07 Score=110.31 Aligned_cols=167 Identities=18% Similarity=0.165 Sum_probs=116.4
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000265 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
.+.|+++|+.+|...|+---|.. ..-|+-+.++|||++.|.=..|.-+-+. -.-..|.|...++.++.+.....
T Consensus 280 iemik~iK~~yP~l~ViaGNVVT---~~qa~nLI~aGaDgLrVGMGsGSiCiTq--evma~GrpQ~TAVy~va~~A~q~- 353 (503)
T KOG2550|consen 280 LEMIKYIKETYPDLQIIAGNVVT---KEQAANLIAAGADGLRVGMGSGSICITQ--KVMACGRPQGTAVYKVAEFANQF- 353 (503)
T ss_pred HHHHHHHHhhCCCceeeccceee---HHHHHHHHHccCceeEeccccCceeeec--eeeeccCCcccchhhHHHHHHhc-
Confidence 35799999999999987664422 2455669999999999932222211111 12356889888999998876543
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCC----------
Q 000265 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAG---------- 1290 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g---------- 1290 (1760)
.||+|+||||++..+|+||+.|||+.|+||..+-.. -.+|-..--.|....++|.|
T Consensus 354 ---gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgt-----------TEapGeyf~~~g~rlKkyrGMGSl~AM~~~ 419 (503)
T KOG2550|consen 354 ---GVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGT-----------TEAPGEYFFRDGVRLKKYRGMGSLDAMESS 419 (503)
T ss_pred ---CCceeecCCcCccchhHhhhhcCchhheecceeeee-----------eccCcceeeecCeeehhccCcchHHHHhhh
Confidence 489999999999999999999999999999743221 13333222222221122211
Q ss_pred -----------------------CHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCCce
Q 000265 1291 -----------------------EPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDM 1327 (1760)
Q Consensus 1291 -----------------------~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~dL 1327 (1760)
..-.|.+|+..+...++..+.-+|.+++++|..+.+-
T Consensus 420 s~~rY~~e~dkvkiAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~~~~ 479 (503)
T KOG2550|consen 420 SQKRYFSEVDKVKIAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREMMYS 479 (503)
T ss_pred hhhccccccceEeeccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHHhhc
Confidence 0245889999999999999999999999998554443
No 125
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=98.45 E-value=1.6e-06 Score=100.37 Aligned_cols=147 Identities=21% Similarity=0.269 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHHh-----CC-CCceEEEEccc---cCHHHHHHHHHHcCCCEEEEecC-------------CCCCCCC
Q 000265 1136 SIEDLAQLIYDLKNA-----NP-GARISVKLVSE---AGVGVIASGVVKGHADHVLISGH-------------DGGTGAS 1193 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~-----~p-~~pV~VKlv~~---~Gvg~iA~~aakaGAD~IvIsG~-------------~GGTGas 1193 (1760)
.-.||.+++...... .+ +.|+.||..+. ....++|..+.|.+.|.++++|. --+||+-
T Consensus 229 ~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGL 308 (398)
T KOG1436|consen 229 KKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGL 308 (398)
T ss_pred hHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCC
Confidence 335666655544332 12 33999999753 23446777788999999998764 1122222
Q ss_pred ccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCC
Q 000265 1194 RWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTC 1273 (1760)
Q Consensus 1194 ~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~c 1273 (1760)
+...++. .++..+++.... +|.+||||..|||.+|.|..+-+.+||..|+++|++-+-
T Consensus 309 sG~plk~------~st~~vR~mY~l--t~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~ye-------------- 366 (398)
T KOG1436|consen 309 SGPPLKP------ISTNTVRAMYTL--TRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYE-------------- 366 (398)
T ss_pred CCCccch------hHHHHHHHHHHh--ccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhhc--------------
Confidence 2222231 233444443332 578999999999999999999999999999999986651
Q ss_pred CCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000265 1274 PVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1274 P~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
| ...+..|..||..+|...|+.+++|.||..
T Consensus 367 ----------------G-----p~i~~kIk~El~~ll~~kG~t~v~d~iG~~ 397 (398)
T KOG1436|consen 367 ----------------G-----PAIIEKIKRELSALLKAKGFTSVDDAIGKD 397 (398)
T ss_pred ----------------C-----chhHHHHHHHHHHHHHhcCCCcHHHhccCC
Confidence 1 124688999999999999999999999864
No 126
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=98.42 E-value=3.6e-07 Score=108.77 Aligned_cols=135 Identities=24% Similarity=0.275 Sum_probs=95.4
Q ss_pred EEEeecccCCCCCCCCCCCCcee------eeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHH
Q 000265 325 ALIHSRFSTNTFPSWDRAQPMRI------LGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSG 398 (1760)
Q Consensus 325 ai~H~RySTNT~psw~~AQPfr~------laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe 398 (1760)
.++|.|-.--... ..+||.+. +.|||||+|-...+.-. +.|. +++.||.|
T Consensus 44 ~l~heRLAIvdp~--sg~QPi~~~~~~~~~~vNGEIYNH~~Lr~~~---------~~~~-------------~~T~sDcE 99 (543)
T KOG0571|consen 44 ILGHERLAIVDPT--SGAQPIVGEDGTYVVTVNGEIYNHKKLREHC---------KDFE-------------FQTGSDCE 99 (543)
T ss_pred cccccceeEecCC--cCCcccccCCCcEEEEECceeccHHHHHHHh---------hhcc-------------cccCCCce
Confidence 6677777766552 46999974 46999999655443321 1121 47889999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCCce--EEEccCCCCCCCc
Q 000265 399 AFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRY--LGATLDRNGLRPG 476 (1760)
Q Consensus 399 ~ld~~Le~l~~~g~sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG~~--igA~lDrnGLRPl 476 (1760)
+|.++.+ ..| .++++.|+ ||=+++++.|.+. +.++||+.|++||
T Consensus 100 vIi~lY~---khg--~~~~~~~L-----------------------------DG~Fafvl~d~~~~kv~~aRDpiGv~~l 145 (543)
T KOG0571|consen 100 VIIHLYE---KHG--GEQAICML-----------------------------DGVFAFVLLDTKDDKVVAARDPIGVTPL 145 (543)
T ss_pred eeeehHh---hcC--chhHHHHh-----------------------------hhheEEEEecCCCCeEEeccCCcCceee
Confidence 9988754 333 57777765 8999888876544 7779999999999
Q ss_pred eEEEEe-CCEEEEEeccccccCCCCcEEEccccCCCcEEEEEcCCCEE
Q 000265 477 RFYITH-SGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIV 523 (1760)
Q Consensus 477 r~~~t~-d~~~i~ASE~galdi~~~~vv~kgrl~PGeml~vd~~~g~i 523 (1760)
|++.+ |+.+++|||.-++.-..+.|. -.-||-.. +.+.+++
T Consensus 146 -Y~g~~~~gs~~~aSe~k~l~d~C~~i~---~fpPgh~y--~~~~~~~ 187 (543)
T KOG0571|consen 146 -YYGWDSDGSVYFASEMKCLEDDCEKIE---SFPPGHYY--TSKTGKL 187 (543)
T ss_pred -EEEecCCCcEEEeeehhhhhhhhhcee---ecCCccee--ecccccc
Confidence 89876 578999999998865556664 46788754 4444443
No 127
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.42 E-value=1.4e-07 Score=121.89 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=49.5
Q ss_pred cccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCC-CCcccCCCCCCC
Q 000265 1706 AYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCG-TPFCHQVCIAPF 1760 (1760)
Q Consensus 1706 ~~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG-~PfC~~~~gCPl 1760 (1760)
..+|..++++++++|+++|+|++.+| +.++|+.||+|||+|| +|||++ +||+
T Consensus 173 ~~~r~~~~~~~~~~R~~~f~Ev~~~~-~~~~~~~ea~rC~~C~~~~~C~~--~CP~ 225 (639)
T PRK12809 173 VNSRKGADKISASERKTHFGEIYCGL-DPQQATYESDRCVYCAEKANCNW--HCPL 225 (639)
T ss_pred CccccCcccCCHHHHhcCHHHhhccC-CHHHHHHHHHHHhCCCCCCcccc--cCCC
Confidence 36899999999999999999999999 9999999999999998 899999 9996
No 128
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.41 E-value=1.5e-07 Score=125.82 Aligned_cols=52 Identities=15% Similarity=0.058 Sum_probs=44.3
Q ss_pred cccCCCCCCHHHHhcCchhhccC--------CCChhHH----HHHHhhhcCCCCCcccC----------CCCCCC
Q 000265 1708 EREGVQYRDPNIRMNDWKEVMEE--------SKPGPLL----KTQSARCMDCGTPFCHQ----------VCIAPF 1760 (1760)
Q Consensus 1708 ~R~~~~~r~~~~R~~Df~Ev~~~--------l~~~~~a----~~QAaRCMdCG~PfC~~----------~~gCPl 1760 (1760)
.-..+++|+|++|++||+|++.+ + +.+++ ..||+|||+||+||||+ ..|||+
T Consensus 143 ~~~~~~~~~~~~r~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~ea~RC~~C~~p~C~~~~~~~~~~~~~~~CP~ 216 (944)
T PRK12779 143 NFIPPYIRPAEERAVDFDLVNQGYLGYQSLGY-SVREVELFVWLEVMRDKQCDDKPCELGVLVQGKAEPKGGCPV 216 (944)
T ss_pred CCCCcccCCHHHHhhChHhhccccccccccCC-CHHHhhhhHHHHHHHhcCCCCCCCCCCcccccccCcCCCCcC
Confidence 34567899999999999999985 8 88884 49999999999999974 249996
No 129
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=98.39 E-value=1.9e-06 Score=98.58 Aligned_cols=105 Identities=15% Similarity=0.069 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc---CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHH
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA---GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAE 1211 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~---Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Lae 1211 (1760)
.+++-+.+++..++.. ++||+||+-+.. ....+|..+.++|||+|+|+....|++ .+....+.+
T Consensus 118 ~dp~~l~~iv~av~~~--~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~-----------~a~~~~I~~ 184 (231)
T TIGR00736 118 KNKELLKEFLTKMKEL--NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGKP-----------YADMDLLKI 184 (231)
T ss_pred CCHHHHHHHHHHHHcC--CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCCc-----------hhhHHHHHH
Confidence 3567788999999954 789999997642 234678889999999999975332211 012345666
Q ss_pred HHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+.+.+ ..+|||+.|||.|..|+.+++..|||+|++||++|.
T Consensus 185 i~~~~------~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 185 LSEEF------NDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred HHHhc------CCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 66542 139999999999999999999999999999998764
No 130
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.32 E-value=4e-07 Score=113.70 Aligned_cols=60 Identities=42% Similarity=0.715 Sum_probs=57.5
Q ss_pred ccCcccCccccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCCCCcccCCCCCCC
Q 000265 1698 AVKHRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF 1760 (1760)
Q Consensus 1698 ~~k~~gF~~~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG~PfC~~~~gCPl 1760 (1760)
|.|+.+|...+|..++.+++++|+++|+|++.++ +.++++.||+|||+|+.|||+. +||.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~~a~rc~~c~~~~C~~--~CP~ 60 (471)
T PRK12810 1 MGKPTGFLEYDRVDPKKRPVAERIKDFKEFYEPF-SEEQAKIQAARCMDCGIPFCHW--GCPV 60 (471)
T ss_pred CCCCCccccccccCcccCCHHHHHhchHhhhccc-CHHHHHHHHHhccCCCCCcccc--cCCC
Confidence 5688999999999999999999999999999999 9999999999999999999999 8995
No 131
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=98.31 E-value=3.2e-06 Score=95.78 Aligned_cols=112 Identities=14% Similarity=0.191 Sum_probs=77.0
Q ss_pred eeeccccccChhhHHHHHHHhhccccccccCCcHHHHhhccCccCCCCChHHHHHHHHHHHHHcC-CCHHHHHHHcCccc
Q 000265 347 ILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAG-RSLPEAVMMMIPEA 425 (1760)
Q Consensus 347 ~laHNGEInt~~gN~n~m~aRe~~~~s~~fg~~~~~l~~~~pi~~~~~SDSe~ld~~Le~l~~~g-~sl~eAi~~~iPea 425 (1760)
+++.||||+|+...+..+ + ...+.||++++..+.+.+-..| +...+++..
T Consensus 74 ~~vfnGeIyN~~eLr~~l------------g------------~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~----- 124 (224)
T cd01910 74 FCLFQGHLDNLGSLKQQY------------G------------LSKTANEAMLVIEAYRTLRDRGPYPADQVVKD----- 124 (224)
T ss_pred EEEEEeEEcCHHHHHHHh------------C------------CCCCCcHHHHHHHHHHHHHhcCCccHHHHHHh-----
Confidence 468999999766544311 1 1256799999977765443334 233344443
Q ss_pred cccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecCC--ceEEEccCCCCCCCceEEEEe-CCEEEEEeccccccCCC-Cc
Q 000265 426 WQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLRPGRFYITH-SGRVIMASEVGVVDIPP-ED 501 (1760)
Q Consensus 426 w~~~~~m~~e~rafYey~s~lmepwdGPa~iv~tdG--~~igA~lDrnGLRPlr~~~t~-d~~~i~ASE~galdi~~-~~ 501 (1760)
++|-|++++-|. +.+.++|||.|.+|| ||+.. |+.+++|||.-+|.-.- ..
T Consensus 125 ------------------------L~G~FAFvi~D~~~~~l~lARD~~Gi~PL-Yyg~~~dG~l~FASElkaL~~~c~~~ 179 (224)
T cd01910 125 ------------------------LEGSFAFVLYDKKTSTVFVASDADGSVPL-YWGIAADGSVVFSDDVELVKASCGKS 179 (224)
T ss_pred ------------------------cCeEEEEEEEECCCCEEEEEEcCCCCcce-EEEEeCCCEEEEEeCHHHhhhhhccE
Confidence 499998887664 556668999999999 88854 88999999998885322 34
Q ss_pred EEEccccCCCcEEE
Q 000265 502 VLRKGRLNPGMMLL 515 (1760)
Q Consensus 502 vv~kgrl~PGeml~ 515 (1760)
+. ..-||-++.
T Consensus 180 ~~---~FPpG~~~~ 190 (224)
T cd01910 180 FA---PFPKGCFFH 190 (224)
T ss_pred EE---EECCCCEEe
Confidence 53 678898653
No 132
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.30 E-value=3.9e-07 Score=118.11 Aligned_cols=51 Identities=18% Similarity=0.384 Sum_probs=48.6
Q ss_pred ccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCC-CCcccCCCCCCC
Q 000265 1707 YEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCG-TPFCHQVCIAPF 1760 (1760)
Q Consensus 1707 ~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG-~PfC~~~~gCPl 1760 (1760)
-+|+.++++++++|++||+|++.+| +.++|..||+|||+|+ .|||+. +||+
T Consensus 191 ~~r~~~~~~~~~~r~~~f~e~~~~~-~~~~a~~~~~rc~~C~~~~~C~~--~CP~ 242 (654)
T PRK12769 191 PPRGEPDKLAIEARKTGFDEIYLPF-RADQAQREASRCLKCGEHSICEW--TCPL 242 (654)
T ss_pred CcccCcCcCCHHHHhcCHHhhcCCC-CHHHHHHHHHhhhcCCCCCCccc--cCCC
Confidence 4789999999999999999999999 9999999999999998 799999 9996
No 133
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=98.27 E-value=6.1e-06 Score=94.63 Aligned_cols=98 Identities=19% Similarity=0.207 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcccc--CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHH
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEA--GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAET 1212 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~--Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev 1212 (1760)
.+++.+.+++..+|+. +.||+||+-... ....+|..+.++|+|+|.+++...|. . ..| ..+.++
T Consensus 123 ~~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~-~----------ad~-~~I~~i 188 (233)
T cd02911 123 KDPERLSEFIKALKET--GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGN-H----------ADL-KKIRDI 188 (233)
T ss_pred CCHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCC-C----------CcH-HHHHHh
Confidence 3478889999999984 899999996543 34567788999999999886542221 1 112 233333
Q ss_pred HHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1213 HQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1213 ~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
. .++|||+.|||.|..|+.+++..|||+|++||+
T Consensus 189 ~---------~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 189 S---------TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred c---------CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 2 259999999999999999999999999999997
No 134
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.18 E-value=9.1e-07 Score=119.34 Aligned_cols=51 Identities=24% Similarity=0.355 Sum_probs=48.4
Q ss_pred ccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCCCCcccCCCCCCC
Q 000265 1707 YEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF 1760 (1760)
Q Consensus 1707 ~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG~PfC~~~~gCPl 1760 (1760)
..|.++++++|++|++||+||+.++ +.+++..||+|||+|+.|+|++ +||+
T Consensus 297 ~~~~~~~~~~~~er~~~f~ev~~~~-~~~~~~~ea~rC~~c~~~~C~~--~CP~ 347 (1006)
T PRK12775 297 PHQTPMPERDAVERARNFKEVNLGY-SLEDALQEAERCIQCAKPTCIA--GCPV 347 (1006)
T ss_pred cccCCCccCCHHHHhhCHHHHhccC-CHHHHHHHHHhccCCCCccccC--CCCC
Confidence 4677889999999999999999999 9999999999999999999999 9996
No 135
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.07 E-value=2.3e-06 Score=112.69 Aligned_cols=52 Identities=31% Similarity=0.500 Sum_probs=49.5
Q ss_pred cccccCCCCCCHHHHhcC-chhhccCCCChhHHHHHHhhhcCCCCCcccCCCCCCC
Q 000265 1706 AYEREGVQYRDPNIRMND-WKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF 1760 (1760)
Q Consensus 1706 ~~~R~~~~~r~~~~R~~D-f~Ev~~~l~~~~~a~~QAaRCMdCG~PfC~~~~gCPl 1760 (1760)
+++|..++++++++|.+| |+|++.+| +.++|..||+|||+|+.|+|+. +||.
T Consensus 293 ~~~r~~~~~~~~~~r~~~~f~ev~~~~-~~~~a~~ea~rC~~c~~~~C~~--~Cp~ 345 (752)
T PRK12778 293 AIERVPMPELDPEYRAHNRFEEVNLGL-TKEQAMTEAKRCLDCKNPGCVE--GCPV 345 (752)
T ss_pred ccCcCCcccCCHHHHhcCChhhccCCC-CHHHHHHHHHHhhcCCCCcccc--cCcC
Confidence 478899999999999999 99999999 9999999999999999999999 8995
No 136
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.05 E-value=3.4e-05 Score=87.62 Aligned_cols=102 Identities=22% Similarity=0.230 Sum_probs=70.0
Q ss_pred HHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCC
Q 000265 1142 QLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDL 1221 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~gl 1221 (1760)
+++.+++.. +.+++++..+ ...+..+.++|+|+|.+.+..-++...+ ...+....+.++.+..
T Consensus 93 ~~~~~~~~~--~i~~i~~v~~----~~~~~~~~~~gad~i~~~~~~~~G~~~~------~~~~~~~~i~~i~~~~----- 155 (236)
T cd04730 93 EVVERLKAA--GIKVIPTVTS----VEEARKAEAAGADALVAQGAEAGGHRGT------FDIGTFALVPEVRDAV----- 155 (236)
T ss_pred HHHHHHHHc--CCEEEEeCCC----HHHHHHHHHcCCCEEEEeCcCCCCCCCc------cccCHHHHHHHHHHHh-----
Confidence 345566653 5777777432 2445668889999999977522211111 0123344555555442
Q ss_pred CCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhcc
Q 000265 1222 RGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGC 1262 (1760)
Q Consensus 1222 r~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc 1262 (1760)
++||++.|||.++.|+.+++.+||++|.+|++++.+..|
T Consensus 156 --~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 156 --DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEES 194 (236)
T ss_pred --CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCccc
Confidence 589999999999999999999999999999998876543
No 137
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=98.00 E-value=6.6e-05 Score=92.99 Aligned_cols=200 Identities=22% Similarity=0.320 Sum_probs=138.6
Q ss_pred hhhcccccCCCCCcccccceeeeeeeecCCCCCCCCCcCccceEEecCCccCHHHHHHHHh-cc-CCCCeeEEEEEEeeC
Q 000265 641 KQMFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKR-MN-YRGWRSKVLDITYSK 718 (1760)
Q Consensus 641 kQ~FAQVTNPPID~iRE~~vmSl~~~~G~~~n~l~~~~~~~~~l~l~sPiL~~~~~~~l~~-~~-~~~~~~~~i~~~~~~ 718 (1760)
.|+=...-+|+|-++|=. . |--.+..|-|. +=|.+.++|+++.. +. ...|+- |..-+-.
T Consensus 252 G~Lpg~KV~~~IA~~R~~-------~--pG~~~ISP~pH--------HDiysieDLaqlI~dLk~~~~~~~--I~VKlva 312 (485)
T COG0069 252 GQLPGEKVTPEIAKTRGS-------P--PGVGLISPPPH--------HDIYSIEDLAQLIKDLKEANPWAK--ISVKLVA 312 (485)
T ss_pred CCCCCccCCHHHHHhcCC-------C--CCCCCcCCCCc--------ccccCHHHHHHHHHHHHhcCCCCe--EEEEEec
Confidence 467777888999888732 1 22233333332 23788888886432 22 123443 3333333
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCC--------CCCCCccccHHHHHHHHHHHHHHcCCCCceeEEEeeC
Q 000265 719 DHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRA--------FSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESA 790 (1760)
Q Consensus 719 ~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~--------~~~~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesg 790 (1760)
..+. +..++ -.++.++.+|++|--. .+-+++-||-.++++-+||.|+.+|||.+|.|++ +|
T Consensus 313 ~~~v-~~iaa---------gvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~-~G 381 (485)
T COG0069 313 EHGV-GTIAA---------GVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIA-DG 381 (485)
T ss_pred ccch-HHHHh---------hhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEe-cC
Confidence 3232 22222 1578899999998652 3456789999999999999999999999999999 79
Q ss_pred CCCcHHHHHHHHhcCccccc----HHHHHHHHH-HHHHcCCCCC---CCCC---CCC---CHHHHHHHHHHHHHHHHHHH
Q 000265 791 EPREVHHFCTLVGFGADAIC----PYLATEAIW-RLQVDGKIPP---KASG---EFH---SKDELVKKYFKASNYGMMKV 856 (1760)
Q Consensus 791 e~re~Hh~a~L~GyGA~av~----Pyla~e~~~-~~~~~~~~~~---~~~~---~~~---~~~~~~~ny~~a~~~GllKv 856 (1760)
..|.--+++..+.+|||+++ |..|+-++. +.+..|..|+ |+++ +.+ ...+-+.||.+.+.+++-.+
T Consensus 382 gl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rel 461 (485)
T COG0069 382 GLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELREL 461 (485)
T ss_pred CccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999996 555554442 3345666655 2221 111 23566789999999999999
Q ss_pred HHhhchhhhhcccc
Q 000265 857 LAKMGISTLASYKG 870 (1760)
Q Consensus 857 msKMGIstl~SY~g 870 (1760)
|+.+|+.+|....|
T Consensus 462 la~lG~~~l~el~g 475 (485)
T COG0069 462 LAALGKRSLSELIG 475 (485)
T ss_pred HHHhCCCCHHHHhc
Confidence 99999999998766
No 138
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.99 E-value=8.8e-05 Score=88.70 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccc---c--CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSE---A--GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAE 1211 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~---~--Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Lae 1211 (1760)
++-+.+++..+|+.. +.||+||+-.. . ....++..+.++|+|.|+|.|.....+ ..|.+....+.+
T Consensus 116 ~~~~~ei~~~vr~~~-~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~--------~~~~~~~~~i~~ 186 (319)
T TIGR00737 116 PDLIGKIVKAVVDAV-DIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQG--------YSGEANWDIIAR 186 (319)
T ss_pred HHHHHHHHHHHHhhc-CCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEccccccc--------CCCchhHHHHHH
Confidence 456778888898876 68999998421 1 234567778999999999976422111 112233344555
Q ss_pred HHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH-HcCCCccccchhHHH
Q 000265 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAA-LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~LiadGGIrtG~DVaKAl-aLGAdaVg~GTa~L~ 1258 (1760)
+.+. .++||++.|||.|+.|+.+++ ..|||+|++|++++.
T Consensus 187 i~~~-------~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 187 VKQA-------VRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred HHHc-------CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 5443 249999999999999999999 689999999999875
No 139
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.98 E-value=0.00012 Score=87.75 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcccc-----CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHH
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSEA-----GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLA 1210 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~-----Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~La 1210 (1760)
.++-+.+++..+++.. +.||+||+-... ....+|..+.++|+|.|+|.|..... ...|.+....+.
T Consensus 117 ~p~~~~eiv~av~~a~-d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~--------~~~G~a~~~~i~ 187 (321)
T PRK10415 117 YPDLVKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRAC--------LFNGEAEYDSIR 187 (321)
T ss_pred CHHHHHHHHHHHHHhc-CCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCcccc--------ccCCCcChHHHH
Confidence 4667788899998876 789999994321 24456777899999999997643211 112322223455
Q ss_pred HHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH-cCCCccccchhHHH
Q 000265 1211 ETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL-LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1211 ev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla-LGAdaVg~GTa~L~ 1258 (1760)
++.+. .++|||+.|||.|..|+.+++. .|||+|++||++|.
T Consensus 188 ~ik~~-------~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~ 229 (321)
T PRK10415 188 AVKQK-------VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG 229 (321)
T ss_pred HHHHh-------cCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhc
Confidence 55553 2599999999999999999997 69999999999875
No 140
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=97.88 E-value=7.4e-05 Score=84.55 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcccc----CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHH
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSEA----GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAE 1211 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~----Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Lae 1211 (1760)
.++-+.++|..+++..+ .||+||+-... ....++..+.++|+|.|+|++.....+ ..+.+....+..
T Consensus 107 ~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~--------~~~~~~~~~~~~ 177 (231)
T cd02801 107 DPELVAEIVRAVREAVP-IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQR--------YSGPADWDYIAE 177 (231)
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHc--------CCCCCCHHHHHH
Confidence 34567788999988764 89999985322 233456678899999999976532110 111222233444
Q ss_pred HHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc-CCCccccchhHHH
Q 000265 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAALL-GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL-GAdaVg~GTa~L~ 1258 (1760)
+.+. .++||+++|||+|..|+.+++.. |||+|++||+++.
T Consensus 178 i~~~-------~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 178 IKEA-------VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHhC-------CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 4432 36999999999999999999999 8999999998776
No 141
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.88 E-value=0.00019 Score=83.39 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=55.3
Q ss_pred CcEEEEEecCCeE-EEEcccchhchhhhhcccCCCCCccccEEEEeecccCCCCCCCCCCCCcee--------eeccccc
Q 000265 284 KDFYICSLSSRTV-VYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRI--------LGHNGEI 354 (1760)
Q Consensus 284 ~~~yI~SlS~~ti-vyKG~g~~~qv~~~y~~DL~~~~~~s~~ai~H~RySTNT~psw~~AQPfr~--------laHNGEI 354 (1760)
+.++|+-++++.+ +||.-.-..+=..... .....+|...|.|+|.+|-+..+..|.|||.. .||||.|
T Consensus 34 DGwGia~y~~~~~~~yk~~~P~~~d~~~~~---~~~~i~S~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l 110 (252)
T COG0121 34 DGWGIAFYEGRGPRLYKSPLPAWEDIALLV---LAYPIKSELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQL 110 (252)
T ss_pred CcceEEEEcCCccEEEeCCCccccchhhhh---cccccCccEEEEEEeccCCCcccccCCCCccccCCccceEEEecCcc
Confidence 4689999999987 9998765432222211 13456888999999999999889999999963 5999999
Q ss_pred cChh
Q 000265 355 NTLR 358 (1760)
Q Consensus 355 nt~~ 358 (1760)
..++
T Consensus 111 ~~~~ 114 (252)
T COG0121 111 DKFK 114 (252)
T ss_pred cCcc
Confidence 8764
No 142
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=97.87 E-value=3.4e-06 Score=86.51 Aligned_cols=38 Identities=26% Similarity=0.607 Sum_probs=22.3
Q ss_pred HhcCchhhccCCCChhHHHHHHhhhcCCCCCcccCCCCCCC
Q 000265 1720 RMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF 1760 (1760)
Q Consensus 1720 R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG~PfC~~~~gCPl 1760 (1760)
|++||+||+..| +.+++..||+|||+|.+|+|+. +||+
T Consensus 1 r~~~f~e~~~~~-~~~~~~~ea~rC~~c~~~pC~~--aCP~ 38 (111)
T PF14691_consen 1 RIKNFKEVEKGY-SEEEAIEEASRCLQCEDPPCQA--ACPA 38 (111)
T ss_dssp ---------SS---HCCHHHHHHHS---TT-HHHH--TSTT
T ss_pred CCcCHHHHhcCc-CHHHHHHHHhhccCCCCCCccc--CCCC
Confidence 789999999999 9999999999999999999999 9996
No 143
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=97.76 E-value=0.00025 Score=86.22 Aligned_cols=123 Identities=27% Similarity=0.328 Sum_probs=83.1
Q ss_pred HHHcCCcEEEEcCCCC--------CCCCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCccccc
Q 000265 739 AIKEGYTLLVLSDRAF--------SSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAIC 810 (1760)
Q Consensus 739 av~~G~~iliLsDr~~--------~~~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av~ 810 (1760)
+++.|+.+|++|=..- ..+++-+|..+++.-+|+.|.++|+|.+|.||+ +|-.|.--|++..+-+|||+|+
T Consensus 223 ~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~-sGgl~t~~dv~kalaLGAD~v~ 301 (368)
T PF01645_consen 223 AAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIA-SGGLRTGDDVAKALALGADAVY 301 (368)
T ss_dssp HHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEE-ESS--SHHHHHHHHHCT-SEEE
T ss_pred hhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEE-eCCccCHHHHHHHHhcCCCeeE
Confidence 7789999999997742 236789999999999999999999999999999 8999999999999999999997
Q ss_pred ----HHHHHHHHHHH-HHcCCCCC---C-CCC--CCCC---HHHHHHHHHHHHHHHHHHHHHhhch
Q 000265 811 ----PYLATEAIWRL-QVDGKIPP---K-ASG--EFHS---KDELVKKYFKASNYGMMKVLAKMGI 862 (1760)
Q Consensus 811 ----Pyla~e~~~~~-~~~~~~~~---~-~~~--~~~~---~~~~~~ny~~a~~~GllKvmsKMGI 862 (1760)
+.+|+.++.-. +..+..|. + ++. ..++ ..+-+.||.+++...|..+|..||+
T Consensus 302 igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el~~~~~a~G~ 367 (368)
T PF01645_consen 302 IGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEELREILAALGK 367 (368)
T ss_dssp -SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred ecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44444444221 12233322 1 111 0122 3566789999999999999999996
No 144
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=97.72 E-value=0.0002 Score=77.04 Aligned_cols=102 Identities=23% Similarity=0.322 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCC-HHHHHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLP-WELGLAETHQT 1215 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP-~~~~Laev~q~ 1215 (1760)
++.+.+.+.++|+.+|+.+|++|+.+....... .+.+.|+|.|.+++..+++.... ..+ ....+..+.
T Consensus 98 ~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~--~~~~~g~d~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~-- 166 (200)
T cd04722 98 AREDLELIRELREAVPDVKVVVKLSPTGELAAA--AAEEAGVDEVGLGNGGGGGGGRD-------AVPIADLLLILAK-- 166 (200)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEECCCCccchh--hHHHcCCCEEEEcCCcCCCCCcc-------CchhHHHHHHHHH--
Confidence 566778889999887789999998654322211 16889999999988755432211 011 111222221
Q ss_pred HHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccch
Q 000265 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFST 1254 (1760)
Q Consensus 1216 L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GT 1254 (1760)
. ..++||+++|||.++.++.+++.+|||+|++|+
T Consensus 167 --~---~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 167 --R---GSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred --h---cCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 1 136899999999999999999999999999986
No 145
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=97.70 E-value=0.00023 Score=85.17 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHhCC-CCceEEEEcccc----CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCC--HHHH
Q 000265 1136 SIEDLAQLIYDLKNANP-GARISVKLVSEA----GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLP--WELG 1208 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p-~~pV~VKlv~~~----Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP--~~~~ 1208 (1760)
.++-+.+++..+|+..| +.||+||+-... ....+|..+.++|+|.|+|.|.....+ +.|.| | ..
T Consensus 115 ~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~--------y~g~~~~~-~~ 185 (312)
T PRK10550 115 DPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDG--------YRAEHINW-QA 185 (312)
T ss_pred CHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccC--------CCCCcccH-HH
Confidence 35667888999998875 689999985421 133567778999999999976432211 22322 3 34
Q ss_pred HHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH-cCCCccccchhHHH
Q 000265 1209 LAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL-LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1209 Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla-LGAdaVg~GTa~L~ 1258 (1760)
+.++.+. + ++||++.|+|.|+.|+.+++. -|||+|++||++|.
T Consensus 186 i~~ik~~-----~--~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~ 229 (312)
T PRK10550 186 IGEIRQR-----L--TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN 229 (312)
T ss_pred HHHHHhh-----c--CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh
Confidence 5555554 2 599999999999999999985 68999999999776
No 146
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.68 E-value=0.00024 Score=85.25 Aligned_cols=112 Identities=10% Similarity=0.088 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcccc-------CHHHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCC-CH-
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSEA-------GVGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGL-PW- 1205 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~-------Gvg~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~Gl-P~- 1205 (1760)
.++-+.+++..+++.. +.||+||+-... ..-..+..+.++|+|+|+|.|... ..|-++. .+..+ |.
T Consensus 107 ~p~~~~~iv~av~~~~-~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~---~~~~~~~~~ 182 (318)
T TIGR00742 107 NADLVADCVKAMQEAV-NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPK---ENREIPPLR 182 (318)
T ss_pred CHHHHHHHHHHHHHHh-CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCcc---ccccCCchh
Confidence 4567788999999875 789999995321 112346678899999999987642 1111110 01111 21
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1206 ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1206 ~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
...+.++.+. + .+||||+-|||.|..|+.+++. |||+|++||++|.
T Consensus 183 ~~~i~~vk~~-----~-~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~ 228 (318)
T TIGR00742 183 YERVYQLKKD-----F-PHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYE 228 (318)
T ss_pred HHHHHHHHHh-----C-CCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHh
Confidence 1223333332 1 2599999999999999999986 9999999999886
No 147
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.67 E-value=0.00028 Score=84.26 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhC-CCCceEEEEcccc---------CHHHHHHHHHHcCCCEEEEecCCCCCCCCcccccc--ccCCC-HH
Q 000265 1140 LAQLIYDLKNAN-PGARISVKLVSEA---------GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIK--NAGLP-WE 1206 (1760)
Q Consensus 1140 LaqlI~~Lk~~~-p~~pV~VKlv~~~---------Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~--~~GlP-~~ 1206 (1760)
+.+.|..+|+.. ++.||.||+.+.. ....++..+.++|+|+|.|++..... +..... ..+.+ ..
T Consensus 194 ~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~---~~~~~~~~~~~~~~~~ 270 (327)
T cd02803 194 LLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYES---PPPIIPPPYVPEGYFL 270 (327)
T ss_pred HHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcc---cccccCCCCCCcchhH
Confidence 467788888876 4679999997531 11235667889999999998753221 111000 01111 11
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc-CCCccccchhHHH
Q 000265 1207 LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL-GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1207 ~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL-GAdaVg~GTa~L~ 1258 (1760)
..+..+.+. + ++||++.|||.|..++.+++.. |||.|++||+++.
T Consensus 271 ~~~~~ir~~-----~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 271 ELAEKIKKA-----V--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHHHHH-----C--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 223333333 1 5899999999999999999999 7999999999886
No 148
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=97.66 E-value=0.00015 Score=82.19 Aligned_cols=102 Identities=21% Similarity=0.131 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+.+.+++..+++. ++.++++-.. ...-+..+.++|+|+|.++.+ |-|+... ....+....+.++.+.+
T Consensus 105 ~~~~~~i~~~~~~-~~i~vi~~v~----t~ee~~~a~~~G~d~i~~~~~-g~t~~~~-----~~~~~~~~~i~~i~~~~- 172 (221)
T PRK01130 105 ETLAELVKRIKEY-PGQLLMADCS----TLEEGLAAQKLGFDFIGTTLS-GYTEETK-----KPEEPDFALLKELLKAV- 172 (221)
T ss_pred CCHHHHHHHHHhC-CCCeEEEeCC----CHHHHHHHHHcCCCEEEcCCc-eeecCCC-----CCCCcCHHHHHHHHHhC-
Confidence 3466778888875 5778776532 123456789999999977533 3332211 11223344555555542
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
++||++.|||+|+.|+.+++.+||++|.+|++++
T Consensus 173 ------~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 173 ------GCPVIAEGRINTPEQAKKALELGAHAVVVGGAIT 206 (221)
T ss_pred ------CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence 5899999999999999999999999999999754
No 149
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00065 Score=81.73 Aligned_cols=110 Identities=18% Similarity=0.123 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccC-----HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHH
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAG-----VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGL 1209 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~G-----vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~L 1209 (1760)
.+++-+.++|..++++.+++||+||.=.... ...+|..+.++|++.|+|-|..-..+ +.|..-...+
T Consensus 118 ~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~--------y~~~ad~~~I 189 (323)
T COG0042 118 KNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQG--------YLGPADWDYI 189 (323)
T ss_pred CCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhc--------CCCccCHHHH
Confidence 4567789999999998767999999843321 23478889999999999987632211 1121222456
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc-CCCccccchhHHH
Q 000265 1210 AETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL-GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1210 aev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL-GAdaVg~GTa~L~ 1258 (1760)
.++.+. +++ +|||+-|+|.|..|+...+.- |+|+|++|++++-
T Consensus 190 ~~vk~~-----~~~-ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 190 KELKEA-----VPS-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred HHHHHh-----CCC-CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 666665 333 999999999999999999995 6999999998664
No 150
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=97.56 E-value=0.00045 Score=83.36 Aligned_cols=114 Identities=12% Similarity=0.063 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcccc-C------HHHHHHHHHHcCCCEEEEecCCCC-CCCCccccccccCCCHHH
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSEA-G------VGVIASGVVKGHADHVLISGHDGG-TGASRWTGIKNAGLPWEL 1207 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~-G------vg~iA~~aakaGAD~IvIsG~~GG-TGas~~~si~~~GlP~~~ 1207 (1760)
.++-+.+++..+++.. +.||+||+-... + ...++..+.++|+|.|+|.|..+. .|-++ ..-...+.....
T Consensus 117 ~p~~~~eiv~avr~~v-~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~-~~~~~~~~~~~~ 194 (333)
T PRK11815 117 EPELVADCVKAMKDAV-SIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSP-KENREIPPLDYD 194 (333)
T ss_pred CHHHHHHHHHHHHHHc-CCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCc-cccccCCCcCHH
Confidence 3456788889998875 789999973211 1 124566788999999999865331 11110 000011111122
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
.+.++.+.. .++|||+.|||.|..|+.+++. |||+|++||+++.
T Consensus 195 ~i~~v~~~~------~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~ 238 (333)
T PRK11815 195 RVYRLKRDF------PHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYH 238 (333)
T ss_pred HHHHHHHhC------CCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHh
Confidence 334443321 2599999999999999999987 8999999999775
No 151
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=97.55 E-value=0.00035 Score=79.24 Aligned_cols=102 Identities=20% Similarity=0.107 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
.+..++..+++.. +.++++...+ ...+..+.++|+|+|.+..+ |-|+... ....+....+.++.+.
T Consensus 110 ~~~~~i~~~~~~g-~~~iiv~v~t----~~ea~~a~~~G~d~i~~~~~-g~t~~~~-----~~~~~~~~~l~~i~~~--- 175 (219)
T cd04729 110 TLAELIKRIHEEY-NCLLMADIST----LEEALNAAKLGFDIIGTTLS-GYTEETA-----KTEDPDFELLKELRKA--- 175 (219)
T ss_pred CHHHHHHHHHHHh-CCeEEEECCC----HHHHHHHHHcCCCEEEccCc-ccccccc-----CCCCCCHHHHHHHHHh---
Confidence 4567788888775 6788776421 23457788999999976433 3232211 1122333455555543
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+ ++||++.|||+++.|+.+++.+|||+|++|++++-
T Consensus 176 --~--~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 176 --L--GIPVIAEGRINSPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred --c--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 2 58999999999999999999999999999999664
No 152
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=97.53 E-value=0.00035 Score=82.21 Aligned_cols=127 Identities=23% Similarity=0.314 Sum_probs=86.2
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEE-cCCcCCHHHHHHHHHcCCC
Q 000265 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQT-DGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~Lia-dGGIrtG~DVaKAlaLGAd 1248 (1760)
|..+++.|+.+|++|-...+ .+++.+|..+++.-+|+.|.+.|+|.++.||+ +|-+|+.-|++..+-+||+
T Consensus 148 a~~Av~~G~~ilILsDr~~~--------~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~ 219 (287)
T PF04898_consen 148 AEAAVREGANILILSDRNAS--------PDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGAD 219 (287)
T ss_dssp HHHHHHCT-SEEEEESTC-C--------TTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-S
T ss_pred HHHHHHcCCcEEEECCCCCC--------cCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHh
Confidence 45588899999999876533 24667899999999999999999999999888 7899999999999999999
Q ss_pred ccccchhHH-HHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcC
Q 000265 1249 EFGFSTAPL-ITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIG 1323 (1760)
Q Consensus 1249 aVg~GTa~L-~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELig 1323 (1760)
+|. +.| +..... .+..+..+ + ..-.+.+.||...+.+.|..+|+++|.++++--+|
T Consensus 220 AV~---PYla~e~~~~---~~~~~~~~------~-------~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~g 276 (287)
T PF04898_consen 220 AVN---PYLAYETIRE---LAERGELP------E-------LSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRG 276 (287)
T ss_dssp EEE---EHCCHHHHHH---CCCCCCCC------T---------HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCC
T ss_pred hhc---HHHHHHHHHH---HHhcCCCC------C-------CCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhccc
Confidence 983 111 111001 11111111 0 01257899999999999999999999999987644
No 153
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.52 E-value=0.00023 Score=78.94 Aligned_cols=96 Identities=22% Similarity=0.149 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEE--EEecCCCCCCCCccccccccCCCHHHHHHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHV--LISGHDGGTGASRWTGIKNAGLPWELGLAETHQT 1215 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~I--vIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~ 1215 (1760)
+.|.++|..+|+.+ .++..= + ..-.-+..+.++|+|+| +++|+..-| + + -.|-...+.+..+.
T Consensus 79 ~~l~~li~~i~~~~--~l~MAD-i---st~ee~~~A~~~G~D~I~TTLsGYT~~t---~-----~-~~pD~~lv~~l~~~ 143 (192)
T PF04131_consen 79 ETLEELIREIKEKY--QLVMAD-I---STLEEAINAAELGFDIIGTTLSGYTPYT---K-----G-DGPDFELVRELVQA 143 (192)
T ss_dssp S-HHHHHHHHHHCT--SEEEEE-----SSHHHHHHHHHTT-SEEE-TTTTSSTTS---T-----T-SSHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHhC--cEEeee-c---CCHHHHHHHHHcCCCEEEcccccCCCCC---C-----C-CCCCHHHHHHHHhC
Confidence 45888999999875 333222 1 22244566999999999 456764433 2 2 33666666665442
Q ss_pred HHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhH
Q 000265 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1216 L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~ 1256 (1760)
.++||+.|+|.|+.++.+|+.+||.+|-+|++.
T Consensus 144 --------~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAI 176 (192)
T PF04131_consen 144 --------DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAI 176 (192)
T ss_dssp --------TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHH
T ss_pred --------CCcEeecCCCCCHHHHHHHHhcCCeEEEECccc
Confidence 589999999999999999999999999999974
No 154
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=97.36 E-value=0.00055 Score=81.85 Aligned_cols=108 Identities=16% Similarity=0.113 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccC-----HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHH
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAG-----VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGL 1209 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~G-----vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~L 1209 (1760)
.+++-+.++|..+++.. +.||+||+-.... .-..+..+.++|++.|+|-|..... .+-|.+-...+
T Consensus 105 ~~p~~~~~iv~~~~~~~-~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q--------~~~~~a~w~~i 175 (309)
T PF01207_consen 105 KDPDLLAEIVKAVRKAV-PIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ--------RYKGPADWEAI 175 (309)
T ss_dssp C-HHHHHHHHHHHHHH--SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC--------CCTS---HHHH
T ss_pred cChHHhhHHHHhhhccc-ccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh--------cCCcccchHHH
Confidence 35678899999999886 6999999954332 3346777999999999998763332 33344444566
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc-CCCccccchhHHH
Q 000265 1210 AETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL-GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1210 aev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL-GAdaVg~GTa~L~ 1258 (1760)
+++.+.+ ++|||+-|+|.|..|+-+.+.. |+|+|++|+++|.
T Consensus 176 ~~i~~~~-------~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~ 218 (309)
T PF01207_consen 176 AEIKEAL-------PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALG 218 (309)
T ss_dssp HHCHHC--------TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC
T ss_pred HHHhhcc-------cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhh
Confidence 6666653 4999999999999999999888 9999999998764
No 155
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.29 E-value=0.0019 Score=78.57 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhCC-----CCceEEEEcccc----C-----HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCH
Q 000265 1140 LAQLIYDLKNANP-----GARISVKLVSEA----G-----VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPW 1205 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p-----~~pV~VKlv~~~----G-----vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~ 1205 (1760)
+.++|..+|+..+ +.+|.+|+.+.. | .-.++..+.++|+|+|.|++.. .+.... ..... .
T Consensus 197 ~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~-~~~~~~--~~~~~---~ 270 (353)
T cd04735 197 PLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWD-FDRKSR--RGRDD---N 270 (353)
T ss_pred HHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCc-cccccc--cCCcc---h
Confidence 4677888888763 778999986521 2 1235667889999999998742 121110 01111 1
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1206 ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1206 ~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
...+..+.+.. ..++||++.|||.|..++.+++.-|||.|++|++++.
T Consensus 271 ~~~~~~ik~~~-----~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 271 QTIMELVKERI-----AGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHHHHHHHHh-----CCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 12223333331 2368999999999999999999999999999999887
No 156
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=97.18 E-value=0.0024 Score=78.58 Aligned_cols=110 Identities=10% Similarity=0.043 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhCC-CCceEEEEcccc------------------C-----HHHHHHHHHHcCCCEEEEecCCCCCCCCcc
Q 000265 1140 LAQLIYDLKNANP-GARISVKLVSEA------------------G-----VGVIASGVVKGHADHVLISGHDGGTGASRW 1195 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p-~~pV~VKlv~~~------------------G-----vg~iA~~aakaGAD~IvIsG~~GGTGas~~ 1195 (1760)
+.++|..+|+..+ +-||+||+.+.. | ...++..+.++|+|+|.|++..-.. . .+
T Consensus 204 ~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~-~-~~ 281 (382)
T cd02931 204 AIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDA-W-YW 281 (382)
T ss_pred HHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcc-c-cc
Confidence 5678888888874 569999986410 1 1235666888999999998642111 0 00
Q ss_pred ccc-cccCCC-HHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000265 1196 TGI-KNAGLP-WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1196 ~si-~~~GlP-~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
... ...+.. +......+.+. + ++||++.|+|++..++.+++.-| ||.|+||+++|.
T Consensus 282 ~~~~~~~~~~~~~~~~~~ik~~-----~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 282 NHPPMYQKKGMYLPYCKALKEV-----V--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred ccCCccCCcchhHHHHHHHHHH-----C--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 000 011111 11122333332 2 58999999999999999999987 999999999887
No 157
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.09 E-value=0.0043 Score=71.16 Aligned_cols=102 Identities=21% Similarity=0.158 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccC------HHHHHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAG------VGVIASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELGL 1209 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~G------vg~iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~L 1209 (1760)
++.+.+-|..+++.. .|+.+|++-+.+ +..+...+.++|+|+|..| |. +.+|+ +...+
T Consensus 105 ~~~v~~ei~~v~~~~--~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~-~~~ga------------t~~~v 169 (221)
T PRK00507 105 WDAVEADIRAVVEAA--GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGF-STGGA------------TVEDV 169 (221)
T ss_pred HHHHHHHHHHHHHhc--CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCC-CCCCC------------CHHHH
Confidence 566777777777653 367899854332 3334556889999988764 33 22222 22333
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1210 AETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1210 aev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
...++. ++.++.|.++|||+|..|+...+.+||+.+|..++.-+
T Consensus 170 ~~m~~~-----~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~~~i 213 (221)
T PRK00507 170 KLMRET-----VGPRVGVKASGGIRTLEDALAMIEAGATRLGTSAGVAI 213 (221)
T ss_pred HHHHHH-----hCCCceEEeeCCcCCHHHHHHHHHcCcceEccCcHHHH
Confidence 334444 34689999999999999999999999999998876544
No 158
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=97.07 E-value=0.0037 Score=77.24 Aligned_cols=132 Identities=22% Similarity=0.293 Sum_probs=98.5
Q ss_pred HHHHHHHcC-CcEEEEcCCCCCC--------CCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcC
Q 000265 735 EARDAIKEG-YTLLVLSDRAFSS--------KRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFG 805 (1760)
Q Consensus 735 ~a~~av~~G-~~iliLsDr~~~~--------~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyG 805 (1760)
++..+++.| +..|++|-..-+. +...+|.+.++..||++|.+.++|.++.||+ +|-+|+-.|++-.+-+|
T Consensus 229 ~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via-sGGI~~g~Dv~kalaLG 307 (392)
T cd02808 229 DIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA-SGGLRTGADVAKALALG 307 (392)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE-ECCCCCHHHHHHHHHcC
Confidence 444555555 9999999874322 3456899999999999999999999999999 89999999999999999
Q ss_pred ccccc---HHHHH-HHHH-HHHHcCCCCC---CCCC------CCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhc
Q 000265 806 ADAIC---PYLAT-EAIW-RLQVDGKIPP---KASG------EFHSKDELVKKYFKASNYGMMKVLAKMGISTLAS 867 (1760)
Q Consensus 806 A~av~---Pyla~-e~~~-~~~~~~~~~~---~~~~------~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~S 867 (1760)
||+|. |+|.- +++. +-+..+..|. +.+. .-....+.+.||.+.+...|..+|.-||.++++.
T Consensus 308 Ad~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~ 383 (392)
T cd02808 308 ADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLEL 383 (392)
T ss_pred CCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 99994 55532 2221 1123444433 1110 0123577889999999999999999999998775
No 159
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=97.02 E-value=0.0037 Score=75.81 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhCCCCceEEEEcccc---C------H---HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHH
Q 000265 1140 LAQLIYDLKNANPGARISVKLVSEA---G------V---GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWEL 1207 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~---G------v---g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~ 1207 (1760)
+.++|..+|+..+.-+|+||+.+.- | . ..++..+.++|+|+|.||+. .+.... .-++..
T Consensus 205 ~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g--~~~~~~-------~~~~~~ 275 (338)
T cd02933 205 LLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEP--RVAGNP-------EDQPPD 275 (338)
T ss_pred HHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecC--CCCCcc-------cccchH
Confidence 4678888888765448999996531 1 1 24566788999999999753 221111 112233
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000265 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
...++.+.+ ++||++.|||. ..++.+++.-| ||.|+||+++|.
T Consensus 276 ~~~~ik~~~-------~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 276 FLDFLRKAF-------KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred HHHHHHHHc-------CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 444555542 58999999997 99999999987 999999999876
No 160
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=96.99 E-value=0.0037 Score=75.74 Aligned_cols=106 Identities=12% Similarity=0.014 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhCCCCceEEEEccc----cCH-----HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHH
Q 000265 1140 LAQLIYDLKNANPGARISVKLVSE----AGV-----GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLA 1210 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~----~Gv-----g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~La 1210 (1760)
+.++|..+|+.. +.||.||+.+. .|. ..++..+.++|+|.|.|++. +- .+.......|. ......
T Consensus 195 ~~eii~~ir~~~-~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g---~~-~~~~~~~~~~~-~~~~~~ 268 (337)
T PRK13523 195 LREIIDAVKEVW-DGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSG---AV-VPARIDVYPGY-QVPFAE 268 (337)
T ss_pred HHHHHHHHHHhc-CCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC---CC-CCCCCCCCccc-cHHHHH
Confidence 467788888886 67999999752 122 23566788899999999864 21 11000111121 222333
Q ss_pred HHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000265 1211 ETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1211 ev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
++.+. .++||++.|+|.|+.++.+++.-| ||.|+|||+++.
T Consensus 269 ~ik~~-------~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia 310 (337)
T PRK13523 269 HIREH-------ANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLR 310 (337)
T ss_pred HHHhh-------cCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh
Confidence 33333 258999999999999999999988 999999999886
No 161
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.013 Score=70.55 Aligned_cols=171 Identities=12% Similarity=0.153 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHH---HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHH
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVG---VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAET 1212 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg---~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev 1212 (1760)
.+|-+.++|..++... ++||++|.--..... ..|..+.++|++.++|-|..--..+. -.|+--..++..+
T Consensus 125 ~~eLv~e~V~~v~~~l-~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~------~~~pad~~~i~~v 197 (358)
T KOG2335|consen 125 NPELVGEMVSAVRANL-NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGL------KTGPADWEAIKAV 197 (358)
T ss_pred CHHHHHHHHHHHHhhc-CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCC------CCCCcCHHHHHHH
Confidence 4677788999998876 889999985433332 35777999999999997753221110 0222222344444
Q ss_pred HHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH-cCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCC
Q 000265 1213 HQTLVANDLRGRTILQTDGQLKTGRDVAIAAL-LGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGE 1291 (1760)
Q Consensus 1213 ~q~L~~~glr~rV~LiadGGIrtG~DVaKAla-LGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~ 1291 (1760)
.+. +.+ |||++-|+|.+-.|+-.++- -||++|+.|++.|.--+-- ..-.-..||.+++.+.-.....|.|.
T Consensus 198 ~~~-----~~~-ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F--~~~~~~~~~~~~~~~~l~~~~e~~g~ 269 (358)
T KOG2335|consen 198 REN-----VPD-IPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALF--LTAGYGPTPWGCVEEYLDIAREFGGL 269 (358)
T ss_pred HHh-----CcC-CcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhh--ccCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 443 444 99999999999999999998 9999999999987521100 00234578888876655555555544
Q ss_pred H------HHHHHHHH---HHHHHHHHHHHhcC-CCChhhh
Q 000265 1292 P------EHVINFFF---MLAEELREIMSQLG-FRTITEM 1321 (1760)
Q Consensus 1292 ~------e~V~n~~~---~l~~ELr~~Ma~lG-~~si~EL 1321 (1760)
+ .|+...+. .+.+++|..++.++ +.++.++
T Consensus 270 ~~~~~~~~Hl~~m~~~~~~~~~~~r~~~~~~~~~~~~~~~ 309 (358)
T KOG2335|consen 270 SSFSLIRHHLFKMLRPLLSIHQDLRRDLAALNSCESVIDF 309 (358)
T ss_pred chhhHHHHHHHHHHHHHHhhhHHHHHHHhhccchhhHHHH
Confidence 2 33333333 23345677777766 5666665
No 162
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=96.90 E-value=0.0071 Score=73.48 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhC-CCCceEEEEcccc----C-----HHHHHHHHHHcC-CCEEEEecCCCCCCCC----ccccccccCC-
Q 000265 1140 LAQLIYDLKNAN-PGARISVKLVSEA----G-----VGVIASGVVKGH-ADHVLISGHDGGTGAS----RWTGIKNAGL- 1203 (1760)
Q Consensus 1140 LaqlI~~Lk~~~-p~~pV~VKlv~~~----G-----vg~iA~~aakaG-AD~IvIsG~~GGTGas----~~~si~~~Gl- 1203 (1760)
+.++|..+|+.. ++.+|.+|+.+.. | .-.++..+.++| +|+|.|++. ..... ....-...+.
T Consensus 194 ~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g--~~~~~~~~~~~~~~~~~~~~ 271 (343)
T cd04734 194 LLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAG--SYYTLLGLAHVVPSMGMPPG 271 (343)
T ss_pred HHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCC--CCCcccccccccCCCCCCcc
Confidence 467788888875 3567888886521 1 224566788898 899999753 11110 0000001111
Q ss_pred CHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000265 1204 PWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1204 P~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
++......+.+.+ ++||++.|+|.|..++.+++.-| ||.|++|++++.
T Consensus 272 ~~~~~~~~ik~~~-------~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 272 PFLPLAARIKQAV-------DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred hhHHHHHHHHHHc-------CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence 1223334444432 58999999999999999999987 999999999887
No 163
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.86 E-value=0.0048 Score=71.21 Aligned_cols=101 Identities=20% Similarity=0.132 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
|+.+.|+..+...-+--..+-.. ..--..|+.++++|+++|-.=|..=|+| .|+.....|..+.+.
T Consensus 108 d~~~tv~aa~~L~~~Gf~vlpyc--~dd~~~ar~l~~~G~~~vmPlg~pIGsg---------~Gi~~~~~I~~I~e~--- 173 (248)
T cd04728 108 DPIETLKAAEILVKEGFTVLPYC--TDDPVLAKRLEDAGCAAVMPLGSPIGSG---------QGLLNPYNLRIIIER--- 173 (248)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHcCCCEeCCCCcCCCCC---------CCCCCHHHHHHHHHh---
Confidence 45555655554421112222121 2334678889999999995533222222 133223444444432
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
.++|||++|||.|+.|+.+|+.||||+|.+||+..
T Consensus 174 ----~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 174 ----ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred ----CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhc
Confidence 25999999999999999999999999999999854
No 164
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.83 E-value=0.005 Score=71.12 Aligned_cols=103 Identities=19% Similarity=0.147 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
..|+.+.|+..+...-+--+++-.. ..--..|+.++++|+|+|-.=|..=|+|. |+.....|..+.+.
T Consensus 106 lpd~~~tv~aa~~L~~~Gf~vlpyc--~~d~~~ak~l~~~G~~~vmPlg~pIGsg~---------gi~~~~~i~~i~e~- 173 (250)
T PRK00208 106 LPDPIETLKAAEILVKEGFVVLPYC--TDDPVLAKRLEEAGCAAVMPLGAPIGSGL---------GLLNPYNLRIIIEQ- 173 (250)
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHcCCCEeCCCCcCCCCCC---------CCCCHHHHHHHHHh-
Confidence 3455566666555421222222122 22345788899999999955222222321 22222234444332
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
.++|||++|||.|+.|+.+|+.||||+|.+||+..
T Consensus 174 ------~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 174 ------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred ------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhh
Confidence 25999999999999999999999999999999854
No 165
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.76 E-value=0.0095 Score=72.14 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhCC-CCceEEEEccc----cCH-----HHHHHHHHHcCCCEEEEecCCCCCCCCcccc---ccccCCC--
Q 000265 1140 LAQLIYDLKNANP-GARISVKLVSE----AGV-----GVIASGVVKGHADHVLISGHDGGTGASRWTG---IKNAGLP-- 1204 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p-~~pV~VKlv~~----~Gv-----g~iA~~aakaGAD~IvIsG~~GGTGas~~~s---i~~~GlP-- 1204 (1760)
+.+.|..+|+..+ +.||.||+.+. .|. ..++..+.++|+|.|.|++. +...+... ......+
T Consensus 202 ~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g---~~~~~~~~~~~~~~~~~~~~ 278 (338)
T cd04733 202 LLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGG---TYESPAMAGAKKESTIAREA 278 (338)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCC---CCCCccccccccCCccccch
Confidence 4678888988874 67999998631 121 24566788999999999763 22111110 0000001
Q ss_pred -HHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000265 1205 -WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1205 -~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
+.....++.+. .++||+++|+|.|..++.+++..| ||.|+||++++.
T Consensus 279 ~~~~~~~~ik~~-------v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 279 YFLEFAEKIRKV-------TKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred hhHHHHHHHHHH-------cCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 12223334333 269999999999999999999998 899999999886
No 166
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=96.76 E-value=0.0084 Score=72.51 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhCC-CCceEEEEccc----cC--H---HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCH-HH
Q 000265 1139 DLAQLIYDLKNANP-GARISVKLVSE----AG--V---GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPW-EL 1207 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p-~~pV~VKlv~~----~G--v---g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~-~~ 1207 (1760)
-+.+.|..+|+..+ +.||.||+.+. .| . ..++..+.++|+|+|.|++. +.+... ....+.++ ..
T Consensus 206 f~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g-~~~~~~----~~~~~~~~~~~ 280 (336)
T cd02932 206 FLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSG-GNSPAQ----KIPVGPGYQVP 280 (336)
T ss_pred HHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCC-CCCccc----ccCCCccccHH
Confidence 35678888888874 67999998642 11 2 23556678899999999753 222110 01111122 23
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000265 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
.+.++.+. .++||++.|+|.|..|+..++.-| ||.|++||+++.
T Consensus 281 ~~~~ir~~-------~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 281 FAERIRQE-------AGIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred HHHHHHhh-------CCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 33334333 258999999999999999999999 999999999886
No 167
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.62 E-value=0.0087 Score=70.29 Aligned_cols=103 Identities=19% Similarity=0.113 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhCCCCceEEEEccccCHHHH--HHHHHHcCCCEEEEecCCCCCCC------------------Ccc---c
Q 000265 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVI--ASGVVKGHADHVLISGHDGGTGA------------------SRW---T 1196 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i--A~~aakaGAD~IvIsG~~GGTGa------------------s~~---~ 1196 (1760)
+.++++.+|..+ +.|+.. |+.++ |..+.++|||+|--.+. |+|+. ... +
T Consensus 100 ~~~~~~~iK~~~-~~l~MA------D~stleEal~a~~~Gad~I~TTl~-gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t 171 (283)
T cd04727 100 ADEEHHIDKHKF-KVPFVC------GARNLGEALRRISEGAAMIRTKGE-AGTGNVVEAVRHMRAVNGEIRKLQSMSEEE 171 (283)
T ss_pred HHHHHHHHHHHc-CCcEEc------cCCCHHHHHHHHHCCCCEEEecCC-CCCCcHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 356788888876 666632 34444 45599999999977766 66765 111 1
Q ss_pred ---cccccCCCHHHHHHHHHHHHHhCCCCCceEEE--EcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1197 ---GIKNAGLPWELGLAETHQTLVANDLRGRTILQ--TDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1197 ---si~~~GlP~~~~Laev~q~L~~~glr~rV~Li--adGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
..+..+.+ ...|.++.+.. ++||+ +.|||.|+.|+..++.+||++|.+|++++-
T Consensus 172 ~~~~~~~~~~d-~elLk~l~~~~-------~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 172 LYAVAKEIQAP-YELVKETAKLG-------RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred HHhhhcccCCC-HHHHHHHHHhc-------CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 01122333 34566666642 47886 999999999999999999999999998774
No 168
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.62 E-value=0.0082 Score=70.54 Aligned_cols=102 Identities=20% Similarity=0.138 Sum_probs=72.6
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHH--HHHHHHcCCCEEEEecCCCCCCCCc---------------c--------
Q 000265 1141 AQLIYDLKNANPGARISVKLVSEAGVGVI--ASGVVKGHADHVLISGHDGGTGASR---------------W-------- 1195 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i--A~~aakaGAD~IvIsG~~GGTGas~---------------~-------- 1195 (1760)
.++++..|..+ +.|+.. |+.++ |..+.+.|||.|--.|. ||||.-. .
T Consensus 103 de~~~~~K~~f-~vpfma------d~~~l~EAlrai~~GadmI~Tt~e-~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~ 174 (287)
T TIGR00343 103 DWTFHIDKKKF-KVPFVC------GARDLGEALRRINEGAAMIRTKGE-AGTGNIVEAVRHMRKINEEIRQIQNMLEEED 174 (287)
T ss_pred HHHHHHHHHHc-CCCEEc------cCCCHHHHHHHHHCCCCEEecccc-CCCccHHHHHHHHHHHHHHHHHHhcccchhH
Confidence 46677788877 667633 33333 45588999999988777 7787500 0
Q ss_pred --ccccccCCCHHHHHHHHHHHHHhCCCCCceEEE--EcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1196 --TGIKNAGLPWELGLAETHQTLVANDLRGRTILQ--TDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1196 --~si~~~GlP~~~~Laev~q~L~~~glr~rV~Li--adGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
..-+..+.| ...|.++.+. .++||+ +.|||.|+.|+..++.+||++|.+|++++-
T Consensus 175 ~~~~a~~~~~~-~elLkei~~~-------~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 175 LAAVAKELRVP-VELLLEVLKL-------GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred HhhhhcccCCC-HHHHHHHHHh-------CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 001234544 4567776653 258887 999999999999999999999999998664
No 169
>PRK13984 putative oxidoreductase; Provisional
Probab=96.57 E-value=0.0015 Score=84.40 Aligned_cols=55 Identities=22% Similarity=0.514 Sum_probs=51.3
Q ss_pred cccCccccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCCCCcccCCCCCCC
Q 000265 1701 HRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCIAPF 1760 (1760)
Q Consensus 1701 ~~gF~~~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG~PfC~~~~gCPl 1760 (1760)
..-|++++|....++++..|+++|+|++.++ +.+++..|+.||++||. |+. .||.
T Consensus 145 ~~~f~~~~~~~~~~~~~~~r~~~~~~~~~g~-~~~~~~~~~~~C~~Cg~--C~~--~CP~ 199 (604)
T PRK13984 145 NSELLDLERVEMEEIPPEERVKSFIEIVKGY-SKEQAMQEAARCVECGI--CTD--TCPA 199 (604)
T ss_pred hhhhhccccCCcccCCHHHHHhchhhhccCC-CHHHHHHhhhhhcCCCc--ccc--cCCC
Confidence 4678999999999999999999999999999 89999999999999995 998 8995
No 170
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=96.50 E-value=0.06 Score=62.59 Aligned_cols=106 Identities=20% Similarity=0.151 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
.+++..++..+|+. +..+++=+.+......+ ...++....++.+ +..+|||. .+ + ..+.+..+.+
T Consensus 115 ~~~~~~~~~~~~~~--Gl~~~~~v~p~T~~e~l-~~~~~~~~~~l~m-sv~~~~g~-~~--------~--~~~~~~i~~l 179 (244)
T PRK13125 115 PDDLEKYVEIIKNK--GLKPVFFTSPKFPDLLI-HRLSKLSPLFIYY-GLRPATGV-PL--------P--VSVERNIKRV 179 (244)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEECCCCCHHHH-HHHHHhCCCEEEE-EeCCCCCC-Cc--------h--HHHHHHHHHH
Confidence 46677788888877 55666655554444443 3355555566656 66677764 21 1 1222222222
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
++ +..+.+|+++|||+|..++.+++..|||+|-+||+++-.
T Consensus 180 r~--~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~ 220 (244)
T PRK13125 180 RN--LVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIEE 220 (244)
T ss_pred HH--hcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 22 122457999999999999999999999999999987753
No 171
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=96.48 E-value=0.016 Score=70.64 Aligned_cols=109 Identities=11% Similarity=0.022 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhC-CCCceEEEEccc----c--C---HHHHHHHHHHcCCCEEEEecC--CCCCCCCccccccccCC-CH
Q 000265 1139 DLAQLIYDLKNAN-PGARISVKLVSE----A--G---VGVIASGVVKGHADHVLISGH--DGGTGASRWTGIKNAGL-PW 1205 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~-p~~pV~VKlv~~----~--G---vg~iA~~aakaGAD~IvIsG~--~GGTGas~~~si~~~Gl-P~ 1205 (1760)
-+.++|..+|+.. ++.+|.||+... . . .-.++..+.++|+|+|.||+. +..+...+ ...+. .+
T Consensus 189 ~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~----~~~~~~~~ 264 (353)
T cd02930 189 FPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIA----TSVPRGAF 264 (353)
T ss_pred HHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccc----ccCCchhh
Confidence 3567788888876 467889998642 1 1 123566688899999999752 22221000 01111 13
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000265 1206 ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1206 ~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
.....++.+. .++||++.|+|.+..++.+++.-| +|.|++|+++|.
T Consensus 265 ~~~~~~ik~~-------v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 265 AWATAKLKRA-------VDIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred HHHHHHHHHh-------CCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 3344455443 268999999999999999999987 999999999887
No 172
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=96.44 E-value=0.028 Score=65.91 Aligned_cols=37 Identities=14% Similarity=0.015 Sum_probs=33.6
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHh
Q 000265 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
+.+|+++|||+|+.++.+++..|||+|-+|++++-.+
T Consensus 198 ~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~ 234 (256)
T TIGR00262 198 AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKII 234 (256)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 4689999999999999999999999999999987543
No 173
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=96.42 E-value=0.015 Score=65.75 Aligned_cols=110 Identities=23% Similarity=0.257 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHH---HHHHHHHHcCCCEEEEecCCCCCCCCcccc-c---cccCCCHHH
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVG---VIASGVVKGHADHVLISGHDGGTGASRWTG-I---KNAGLPWEL 1207 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg---~iA~~aakaGAD~IvIsG~~GGTGas~~~s-i---~~~GlP~~~ 1207 (1760)
.+.+++..+.++.|+.-|+.+++|-++..-... ..|..+.++|+|.|.- +|||..-|... + -.-..|+
T Consensus 100 f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQT---EGgtss~p~~~g~lglIekaapT-- 174 (242)
T PF04481_consen 100 FSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQT---EGGTSSKPTSPGILGLIEKAAPT-- 174 (242)
T ss_pred ecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEc---CCCCCCCCCCcchHHHHHHHhHH--
Confidence 356788889999999999999999976543332 3678899999999964 45665444211 0 0112243
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
|+.+|..-+. .++||+.+.||.. --+=.|+++||.+||+|++
T Consensus 175 -LAaay~ISr~----v~iPVlcASGlS~-vT~PmAiaaGAsGVGVGSa 216 (242)
T PF04481_consen 175 -LAAAYAISRA----VSIPVLCASGLSA-VTAPMAIAAGASGVGVGSA 216 (242)
T ss_pred -HHHHHHHHhc----cCCceEeccCcch-hhHHHHHHcCCcccchhHH
Confidence 3444443222 3699999999964 4467899999999999996
No 174
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=96.39 E-value=0.013 Score=66.90 Aligned_cols=102 Identities=24% Similarity=0.305 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHHH------HHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHH
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGV------IASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELG 1208 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~------iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~ 1208 (1760)
.++.+.+.|..++.+.++. +.||..-+.+.-+ ....+.++|||+|.-| |.. +.|++ ..-
T Consensus 107 ~~~~V~~eI~~v~~a~~~~-~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~-~~gAT------------~ed 172 (228)
T COG0274 107 NWEAVEREIRAVVEACADA-VVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFS-AGGAT------------VED 172 (228)
T ss_pred CHHHHHHHHHHHHHHhCCC-ceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCC-CCCCC------------HHH
Confidence 3677888898888887554 7888876655433 2234889999999765 332 22222 122
Q ss_pred HHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhH
Q 000265 1209 LAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1209 Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~ 1256 (1760)
+.-..++ ++.+|-|=++|||||..|+.+++.+||..+|..+..
T Consensus 173 v~lM~~~-----vg~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs~v 215 (228)
T COG0274 173 VKLMKET-----VGGRVGVKASGGIRTAEDAKAMIEAGATRIGTSSGV 215 (228)
T ss_pred HHHHHHH-----hccCceeeccCCcCCHHHHHHHHHHhHHHhccccHH
Confidence 2222233 356789999999999999999999999998877754
No 175
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=96.38 E-value=0.023 Score=65.13 Aligned_cols=74 Identities=14% Similarity=-0.033 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHH-HHHc
Q 000265 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAI-AALL 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaK-AlaL 1245 (1760)
...+..+.++|+|.|++++.+... . ..|. ....+.++.+. ..+||++.|||++..|+.+ ....
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g-~-------~~g~-~~~~~~~i~~~-------~~ipvia~GGi~s~~di~~~l~~~ 219 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDG-T-------MKGY-DLELIKTVSDA-------VSIPVIALGGAGSLDDLVEVALEA 219 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccC-C-------cCCC-CHHHHHHHHhh-------CCCCEEEECCCCCHHHHHHHHHHc
Confidence 456777889999999999853311 1 1232 23344455443 2589999999999999999 6779
Q ss_pred CCCccccchhH
Q 000265 1246 GAEEFGFSTAP 1256 (1760)
Q Consensus 1246 GAdaVg~GTa~ 1256 (1760)
||++|.+||++
T Consensus 220 gadgV~vg~a~ 230 (232)
T TIGR03572 220 GASAVAAASLF 230 (232)
T ss_pred CCCEEEEehhh
Confidence 99999999986
No 176
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=96.35 E-value=0.025 Score=69.42 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhCC-CCceEEEEccc-c----C-----HHHHHHHHHHcC-CCEEEEecCCCCCCCCccccccccCCCHHH
Q 000265 1140 LAQLIYDLKNANP-GARISVKLVSE-A----G-----VGVIASGVVKGH-ADHVLISGHDGGTGASRWTGIKNAGLPWEL 1207 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p-~~pV~VKlv~~-~----G-----vg~iA~~aakaG-AD~IvIsG~~GGTGas~~~si~~~GlP~~~ 1207 (1760)
+.++++.+|++.+ +.||++++.+. . | ...++..+.+.| +|.|.+++.+--.+.. +...+ |.-
T Consensus 202 ~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~----~~~~~-~~~- 275 (363)
T COG1902 202 LLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGT----ITVSG-PGY- 275 (363)
T ss_pred HHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCC----ccccc-cch-
Confidence 4677888888874 45799999763 1 2 134677788999 7999998742211111 11111 110
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000265 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
-+..+ ..++. ..++|||+.|+|.++..+-.+++-| ||.|+|||++|.
T Consensus 276 ~~~~a-~~i~~---~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 276 QVEFA-ARIKK---AVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred hHHHH-HHHHH---hcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc
Confidence 01111 11111 1259999999999999999999998 999999999987
No 177
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.34 E-value=0.028 Score=64.14 Aligned_cols=77 Identities=13% Similarity=0.058 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000265 1166 VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
....+..+.+.|+|.|++.+.+- .|. ..| |....+.++.+. .++||++.|||++..|+.+++..
T Consensus 148 ~~~~~~~~~~~ga~~iii~~~~~-~g~-------~~g-~~~~~i~~i~~~-------~~ipvi~~GGi~~~~di~~~~~~ 211 (234)
T cd04732 148 LEELAKRFEELGVKAIIYTDISR-DGT-------LSG-PNFELYKELAAA-------TGIPVIASGGVSSLDDIKALKEL 211 (234)
T ss_pred HHHHHHHHHHcCCCEEEEEeecC-CCc-------cCC-CCHHHHHHHHHh-------cCCCEEEecCCCCHHHHHHHHHC
Confidence 34567778899999999865421 111 123 223456666554 25999999999999999999999
Q ss_pred CCCccccchhHHH
Q 000265 1246 GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 GAdaVg~GTa~L~ 1258 (1760)
||++|.+|++++.
T Consensus 212 Ga~gv~vg~~~~~ 224 (234)
T cd04732 212 GVAGVIVGKALYE 224 (234)
T ss_pred CCCEEEEeHHHHc
Confidence 9999999999765
No 178
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.26 E-value=0.025 Score=66.88 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhCCC-CceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPG-ARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~-~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
+.+.+.|..+|+..|. .+|.|= +..-.-|..++++|||+|.+|+.+ ..-|.++.+.+
T Consensus 166 g~i~~~v~~~k~~~p~~~~I~VE----v~tleea~~A~~~GaDiI~LDn~~------------------~e~l~~~v~~~ 223 (273)
T PRK05848 166 KDLKEFIQHARKNIPFTAKIEIE----CESLEEAKNAMNAGADIVMCDNMS------------------VEEIKEVVAYR 223 (273)
T ss_pred CcHHHHHHHHHHhCCCCceEEEE----eCCHHHHHHHHHcCCCEEEECCCC------------------HHHHHHHHHHh
Confidence 4678889999998874 566554 233455677999999999988751 24556666654
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
.. ...++.|.++||| |...+.+.+.+|+|.+.+|+..-
T Consensus 224 ~~--~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 224 NA--NYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred hc--cCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 32 1246899999999 99999999999999999998643
No 179
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=96.25 E-value=0.027 Score=64.28 Aligned_cols=75 Identities=15% Similarity=0.041 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000265 1167 GVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
-..+..+.+.|+|.|++..-+. |+. .| +....+.++.+. .++||++.|||++..|+.+++..
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~---------~g-~~~~~i~~i~~~-------~~ipvia~GGi~~~~di~~~~~~ 210 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTL---------SG-PNFELTKELVKA-------VNVPVIASGGVSSIDDLIALKKL 210 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCc---------CC-CCHHHHHHHHHh-------CCCCEEEeCCCCCHHHHHHHHHC
Confidence 3467778999999887643322 221 12 223455555543 25899999999999999999999
Q ss_pred CCCccccchhHHH
Q 000265 1246 GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 GAdaVg~GTa~L~ 1258 (1760)
||++|.+||+++.
T Consensus 211 Gadgv~ig~a~~~ 223 (230)
T TIGR00007 211 GVYGVIVGKALYE 223 (230)
T ss_pred CCCEEEEeHHHHc
Confidence 9999999999875
No 180
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=96.18 E-value=0.021 Score=65.81 Aligned_cols=76 Identities=13% Similarity=-0.003 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc-
Q 000265 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL- 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL- 1245 (1760)
...+..+.++|+|.|++++.+-.+ . .-|..+ ..+.++.+. ..+||++.|||++..|+.+++.+
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g-~-------~~g~~~-~~i~~i~~~-------~~~pvia~GGi~~~~di~~~l~~~ 215 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDG-T-------KKGYDL-ELIRAVSSA-------VNIPVIASGGAGKPEHFVEAFEEG 215 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCC-C-------CCCCCH-HHHHHHHhh-------CCCCEEEeCCCCCHHHHHHHHHhC
Confidence 345677889999999998764311 1 113233 334444433 25999999999999999999998
Q ss_pred CCCccccchhHHH
Q 000265 1246 GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 GAdaVg~GTa~L~ 1258 (1760)
||++|.+|+++.-
T Consensus 216 g~dgv~vg~al~~ 228 (243)
T cd04731 216 GADAALAASIFHF 228 (243)
T ss_pred CCCEEEEeHHHHc
Confidence 9999999998765
No 181
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.16 E-value=0.038 Score=65.50 Aligned_cols=95 Identities=18% Similarity=0.179 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
.+.+.|..+|+..|..+|.|-. ..-.-|..++++|||+|.+|+.. ..-+.++.+.++.
T Consensus 168 ~i~~av~~~r~~~~~~kIeVEv----~~leea~~a~~agaDiI~LDn~~------------------~e~l~~~v~~l~~ 225 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVEVEV----ESLEDALKAAKAGADIIMLDNMT------------------PEEIREVIEALKR 225 (278)
T ss_pred HHHHHHHHHHHhCCCCcEEEEe----CCHHHHHHHHHcCcCEEEECCCC------------------HHHHHHHHHHHHh
Confidence 3677888899887777776664 33455677999999999999872 2467788887877
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhH
Q 000265 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~ 1256 (1760)
.+.+.++.|.++||| |...|.+.+..|+|.+.+|...
T Consensus 226 ~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt 262 (278)
T PRK08385 226 EGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGALT 262 (278)
T ss_pred cCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhh
Confidence 666678999999999 9999999999999999999753
No 182
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.12 E-value=0.038 Score=63.54 Aligned_cols=76 Identities=17% Similarity=0.079 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1166 VGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
.-..+..+.+.|++.|++.+.+- |+ .-|.. ...+.++.+.. .+||++.|||++..|+.+...
T Consensus 151 ~~~~~~~~~~~G~~~i~~~~~~~~g~---------~~g~~-~~~i~~i~~~~-------~iPvia~GGI~~~~di~~~~~ 213 (241)
T PRK13585 151 PVEAAKRFEELGAGSILFTNVDVEGL---------LEGVN-TEPVKELVDSV-------DIPVIASGGVTTLDDLRALKE 213 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCC---------cCCCC-HHHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHH
Confidence 44567778899999999876532 11 11322 33456665542 589999999999999999999
Q ss_pred cCCCccccchhHHH
Q 000265 1245 LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~ 1258 (1760)
+||++|.+||+++-
T Consensus 214 ~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 214 AGAAGVVVGSALYK 227 (241)
T ss_pred cCCCEEEEEHHHhc
Confidence 99999999998764
No 183
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=96.12 E-value=0.01 Score=67.92 Aligned_cols=76 Identities=24% Similarity=0.195 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000265 1166 VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
--.+|+.+.++|+.+|--=|..=|+| .|+-....|..+.+.+ +||||+|+||.++.|++.|+.|
T Consensus 133 D~v~akrL~d~GcaavMPlgsPIGSg---------~Gi~n~~~l~~i~~~~-------~vPvIvDAGiG~pSdaa~AMEl 196 (247)
T PF05690_consen 133 DPVLAKRLEDAGCAAVMPLGSPIGSG---------RGIQNPYNLRIIIERA-------DVPVIVDAGIGTPSDAAQAMEL 196 (247)
T ss_dssp -HHHHHHHHHTT-SEBEEBSSSTTT------------SSTHHHHHHHHHHG-------SSSBEEES---SHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCCEEEecccccccC---------cCCCCHHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHHc
Confidence 34678999999999998877654553 2555556777776653 6999999999999999999999
Q ss_pred CCCccccchhHH
Q 000265 1246 GAEEFGFSTAPL 1257 (1760)
Q Consensus 1246 GAdaVg~GTa~L 1257 (1760)
|||+|.+-|+..
T Consensus 197 G~daVLvNTAiA 208 (247)
T PF05690_consen 197 GADAVLVNTAIA 208 (247)
T ss_dssp T-SEEEESHHHH
T ss_pred CCceeehhhHHh
Confidence 999999999854
No 184
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=96.11 E-value=0.01 Score=68.65 Aligned_cols=76 Identities=22% Similarity=0.187 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000265 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
-.+|+.+.++|+.+|--=|..=|+| -|+.....|..+.+. .+|+|++|+||.++.|+++|+.||
T Consensus 148 ~v~a~rLed~Gc~aVMPlgsPIGSg---------~Gl~n~~~l~~i~e~-------~~vpVivdAGIgt~sDa~~AmElG 211 (267)
T CHL00162 148 PMLAKHLEDIGCATVMPLGSPIGSG---------QGLQNLLNLQIIIEN-------AKIPVIIDAGIGTPSEASQAMELG 211 (267)
T ss_pred HHHHHHHHHcCCeEEeeccCcccCC---------CCCCCHHHHHHHHHc-------CCCcEEEeCCcCCHHHHHHHHHcC
Confidence 4678999999999998766544443 244444555544432 369999999999999999999999
Q ss_pred CCccccchhHHH
Q 000265 1247 AEEFGFSTAPLI 1258 (1760)
Q Consensus 1247 AdaVg~GTa~L~ 1258 (1760)
||+|.+.|+..-
T Consensus 212 aDgVL~nSaIak 223 (267)
T CHL00162 212 ASGVLLNTAVAQ 223 (267)
T ss_pred CCEEeecceeec
Confidence 999999997553
No 185
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.01 E-value=0.062 Score=61.00 Aligned_cols=100 Identities=17% Similarity=0.085 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
.+++.+++...+.. +..+.+-. .+..+ +..+.+.|+|.|.+.+.++.+ .+.. ...+.++.+.
T Consensus 107 ~~~~~~~~~~~~~~--g~~~~v~v---~~~~e-~~~~~~~g~~~i~~t~~~~~~----------~~~~-~~~~~~l~~~- 168 (217)
T cd00331 107 DEQLKELYELAREL--GMEVLVEV---HDEEE-LERALALGAKIIGINNRDLKT----------FEVD-LNTTERLAPL- 168 (217)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEE---CCHHH-HHHHHHcCCCEEEEeCCCccc----------cCcC-HHHHHHHHHh-
Confidence 35666666666544 33333332 23333 456888999999887554322 1211 2333444332
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+...++|++.|||.+..|+.+++.+||++|.+|++++-
T Consensus 169 ----~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 169 ----IPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred ----CCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 22358999999999999999999999999999998664
No 186
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=95.99 E-value=0.021 Score=64.15 Aligned_cols=93 Identities=23% Similarity=0.218 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHH--HHHHHHcCCCEE--EEecCCCCCCCCccccccccCCCHHHHHHHHHH
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVI--ASGVVKGHADHV--LISGHDGGTGASRWTGIKNAGLPWELGLAETHQ 1214 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i--A~~aakaGAD~I--vIsG~~GGTGas~~~si~~~GlP~~~~Laev~q 1214 (1760)
++.++|...|.. +.-+ + .++.++ +..|.++|+|+| +++|+.+-+ . +.. -|-...|.++.+
T Consensus 115 ~~~~~i~~~k~~--~~l~---M---AD~St~ee~l~a~~~G~D~IGTTLsGYT~~~---~----~~~-~pDf~lvk~l~~ 178 (229)
T COG3010 115 DLEELIARIKYP--GQLA---M---ADCSTFEEGLNAHKLGFDIIGTTLSGYTGYT---E----KPT-EPDFQLVKQLSD 178 (229)
T ss_pred hHHHHHHHhhcC--CcEE---E---eccCCHHHHHHHHHcCCcEEecccccccCCC---C----CCC-CCcHHHHHHHHh
Confidence 566777775433 3222 1 133333 344889999999 788886532 1 122 255566665554
Q ss_pred HHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1215 TLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1215 ~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
. ..+||+-|.+-|+..+.+|+.+||++|-+|++
T Consensus 179 ~--------~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsA 211 (229)
T COG3010 179 A--------GCRVIAEGRYNTPEQAKKAIEIGADAVVVGSA 211 (229)
T ss_pred C--------CCeEEeeCCCCCHHHHHHHHHhCCeEEEECcc
Confidence 2 58899999999999999999999999999986
No 187
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=95.92 E-value=0.041 Score=67.70 Aligned_cols=109 Identities=12% Similarity=0.088 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhC-CCCceEEEEcccc----C----HH---HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHH
Q 000265 1140 LAQLIYDLKNAN-PGARISVKLVSEA----G----VG---VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWEL 1207 (1760)
Q Consensus 1140 LaqlI~~Lk~~~-p~~pV~VKlv~~~----G----vg---~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~ 1207 (1760)
+.++|..+|+.. ++.+|.+|+.+.. | .. .++..+.+ .+|+|.+++..=........ ...-|. +..
T Consensus 203 ~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~-~~~~~~-~~~ 279 (370)
T cd02929 203 WRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSR-FYPEGH-QEP 279 (370)
T ss_pred HHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccc-cCCccc-cHH
Confidence 567888899887 4678999986531 1 11 23333444 48999997531000000000 000111 122
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000265 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
...++.+. .++||++.|+|.+..++.+++.-| ||.|+||+++|.
T Consensus 280 ~~~~ik~~-------~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 280 YIKFVKQV-------TSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHH-------CCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 22333333 258999999999999999999988 999999999886
No 188
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.90 E-value=0.0052 Score=80.51 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=39.8
Q ss_pred cccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCCCC
Q 000265 1706 AYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTP 1750 (1760)
Q Consensus 1706 ~~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG~P 1750 (1760)
+.+|..++.+++++|..+|+|+..+| ++++|..||+|||.|+-+
T Consensus 532 ~~~r~~~~~~~~~~r~~~f~ev~~~~-~~~~a~~EA~~~~~~~C~ 575 (652)
T PRK12814 532 PAPRVALPELPLEERTGGFEEVVTGY-SPEQAREEALRCLRCRCN 575 (652)
T ss_pred ccccccccccCHHHHhcCccccccCC-CHHHHHHHHHHhhhhhcC
Confidence 35677888999999999999999999 999999999999999633
No 189
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=95.89 E-value=0.12 Score=63.33 Aligned_cols=142 Identities=18% Similarity=0.219 Sum_probs=104.1
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000265 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|.++.+++++|++...-.+-.+.+ + .-+.|..+++.|+..|++|..+-..-.-.+|++.++
T Consensus 197 ~~~~~~~~i~~l~~~~~~PvivKgv--------~----------~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L 258 (344)
T cd02922 197 DPTLTWDDIKWLRKHTKLPIVLKGV--------Q----------TVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVL 258 (344)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEcC--------C----------CHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHH
Confidence 4778999999998743111111111 0 136778889999999999986532222357888888
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000265 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
-.++..+...+- ++-||+ +|-+|.--|++-.|-.||++| .|+|. .+.. ..++.+.+
T Consensus 259 ~~i~~~~~~~~~--~~~vi~-~GGIr~G~Dv~kalaLGA~aV~iG~~~l~-----~l~~-------------~G~~gv~~ 317 (344)
T cd02922 259 LEIRKHCPEVFD--KIEVYV-DGGVRRGTDVLKALCLGAKAVGLGRPFLY-----ALSA-------------YGEEGVEK 317 (344)
T ss_pred HHHHHHHHHhCC--CceEEE-eCCCCCHHHHHHHHHcCCCEEEECHHHHH-----HHhh-------------ccHHHHHH
Confidence 888887655543 577777 799999999999999999999 45554 1111 13678889
Q ss_pred HHHHHHHHHHHHHHhhchhhhhcc
Q 000265 845 YFKASNYGMMKVLAKMGISTLASY 868 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~SY 868 (1760)
+..-+.+.|..+|.-||.++|+.-
T Consensus 318 ~l~~l~~EL~~~m~l~G~~~i~~l 341 (344)
T cd02922 318 AIQILKDEIETTMRLLGVTSLDQL 341 (344)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHh
Confidence 999999999999999999998763
No 190
>PRK07695 transcriptional regulator TenI; Provisional
Probab=95.89 E-value=0.042 Score=61.74 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=61.0
Q ss_pred HHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCc
Q 000265 1145 YDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGR 1224 (1760)
Q Consensus 1145 ~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~r 1224 (1760)
.++|+..|+..|++.. ..+. .+..+.++|+|+|.+ |+-..|...+ ....+....+.++.+. -+
T Consensus 87 ~~~r~~~~~~~ig~s~---~s~e-~a~~a~~~Gadyi~~-g~v~~t~~k~-----~~~~~g~~~l~~~~~~-------~~ 149 (201)
T PRK07695 87 RSVREKFPYLHVGYSV---HSLE-EAIQAEKNGADYVVY-GHVFPTDCKK-----GVPARGLEELSDIARA-------LS 149 (201)
T ss_pred HHHHHhCCCCEEEEeC---CCHH-HHHHHHHcCCCEEEE-CCCCCCCCCC-----CCCCCCHHHHHHHHHh-------CC
Confidence 4455555667777742 1222 355688999999976 3322221111 1111112334444332 25
Q ss_pred eEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1225 TILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1225 V~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+||++.||| +..++..++.+||++|++|++++.
T Consensus 150 ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 150 IPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred CCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 899999999 999999999999999999998764
No 191
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=95.88 E-value=0.038 Score=63.05 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000265 1167 GVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
-..+..+.+.|++.|++.+.+- |+ ..| |-...+.++.+.. .+||++.|||+|..|+.+++.+
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~---------~~G-~d~~~i~~l~~~~-------~ipvia~GGi~~~~di~~~~~~ 211 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGT---------LSG-PNVEATRELAAAV-------PIPVIASGGVSSLDDIKALKGL 211 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCC---------cCC-CCHHHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHHc
Confidence 4567778899999877754321 22 124 3334566665542 4899999999999999999999
Q ss_pred C-CCccccchhHHH
Q 000265 1246 G-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 G-AdaVg~GTa~L~ 1258 (1760)
| |++|.+|++++.
T Consensus 212 g~~~gv~vg~a~~~ 225 (233)
T PRK00748 212 GAVEGVIVGRALYE 225 (233)
T ss_pred CCccEEEEEHHHHc
Confidence 9 999999999875
No 192
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=95.88 E-value=0.055 Score=66.57 Aligned_cols=98 Identities=20% Similarity=0.159 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccc-cCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccc---cCCCHHHHHHH
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSE-AGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKN---AGLPWELGLAE 1211 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~-~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~---~GlP~~~~Lae 1211 (1760)
.++-+.+.|..+|+. . |.||.-.. ......+..+.++|+|+|+|.|..- +..+ .+ +|. -|.+
T Consensus 117 ~p~l~~~ii~~vr~a--~--VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~--------~q~~~sg~~-~p~-~l~~ 182 (369)
T TIGR01304 117 KPELLGERIAEVRDS--G--VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLV--------SAEHVSTSG-EPL-NLKE 182 (369)
T ss_pred ChHHHHHHHHHHHhc--c--eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccch--------hhhccCCCC-CHH-HHHH
Confidence 456678889999886 2 66665332 2456778889999999999987520 0001 12 233 2444
Q ss_pred HHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
..+.+ ++|||+ |++.|..|+.+++..|||+|.+|+.
T Consensus 183 ~i~~~-------~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~g 218 (369)
T TIGR01304 183 FIGEL-------DVPVIA-GGVNDYTTALHLMRTGAAGVIVGPG 218 (369)
T ss_pred HHHHC-------CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 43331 589998 9999999999999999999986653
No 193
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=95.80 E-value=0.22 Score=58.62 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=32.7
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHh
Q 000265 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
++||++.+||+|+.||.+++.. ||+|.+||+++-.+
T Consensus 200 ~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~ 235 (258)
T PRK13111 200 DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKII 235 (258)
T ss_pred CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHH
Confidence 5899999999999999999986 99999999988654
No 194
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=95.79 E-value=0.062 Score=62.73 Aligned_cols=77 Identities=14% Similarity=-0.001 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000265 1166 VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
....+..+.++|+|.|++++.+..+ . .-|.. ...+.++.+. ..+||++.|||++..|+.+++.+
T Consensus 157 ~~~~~~~l~~~G~~~iivt~i~~~g-~-------~~g~~-~~~~~~i~~~-------~~ipvia~GGi~s~~di~~~~~~ 220 (254)
T TIGR00735 157 AVEWAKEVEKLGAGEILLTSMDKDG-T-------KSGYD-LELTKAVSEA-------VKIPVIASGGAGKPEHFYEAFTK 220 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCccc-C-------CCCCC-HHHHHHHHHh-------CCCCEEEeCCCCCHHHHHHHHHc
Confidence 4456777899999999997653311 1 11222 2344444443 25899999999999999999999
Q ss_pred C-CCccccchhHHH
Q 000265 1246 G-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 G-AdaVg~GTa~L~ 1258 (1760)
| |++|.+|+++..
T Consensus 221 g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 221 GKADAALAASVFHY 234 (254)
T ss_pred CCcceeeEhHHHhC
Confidence 9 999999998543
No 195
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=95.75 E-value=0.049 Score=63.17 Aligned_cols=76 Identities=13% Similarity=0.015 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc-
Q 000265 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL- 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL- 1245 (1760)
-..+..+.++|++.|++.+-+.-+ . ..|. -...+.++.+. ..+||+++|||+|..|+.++..+
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g-~-------~~G~-d~~~i~~i~~~-------~~ipviasGGi~s~~D~~~l~~~~ 212 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDG-T-------LTGP-NLELLREVCAR-------TDAPVVASGGVSSLDDLRALAELV 212 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCC-C-------ccCC-CHHHHHHHHhh-------CCCCEEEeCCCCCHHHHHHHhhhc
Confidence 356677889999999997653311 1 1242 23455666554 25899999999999999998765
Q ss_pred --CCCccccchhHHH
Q 000265 1246 --GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 --GAdaVg~GTa~L~ 1258 (1760)
||++|.+|++++.
T Consensus 213 ~~GvdgV~igra~~~ 227 (241)
T PRK14024 213 PLGVEGAIVGKALYA 227 (241)
T ss_pred cCCccEEEEeHHHHc
Confidence 9999999998775
No 196
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=95.74 E-value=0.094 Score=60.03 Aligned_cols=99 Identities=22% Similarity=0.258 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccC------HHHHHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAG------VGVIASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELGL 1209 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~G------vg~iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~L 1209 (1760)
++.+.+.|..+++...+ +.+|.+-+.+ +...+..+.++|||+|..| |+. ..|+++ .-+
T Consensus 101 ~~~v~~ei~~i~~~~~g--~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~-~~gat~------------~dv 165 (211)
T TIGR00126 101 EEVVYDDIRAVVEACAG--VLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG-AGGATV------------EDV 165 (211)
T ss_pred HHHHHHHHHHHHHHcCC--CeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC-CCCCCH------------HHH
Confidence 34455556666655433 4455544333 2223445889999999885 553 222221 122
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1210 AETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1210 aev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
....+. ++++++|-++|||||..|+...+.+||+.+|..+.
T Consensus 166 ~~m~~~-----v~~~v~IKaaGGirt~~~a~~~i~aGa~riGts~~ 206 (211)
T TIGR00126 166 RLMRNT-----VGDTIGVKASGGVRTAEDAIAMIEAGASRIGASAG 206 (211)
T ss_pred HHHHHH-----hccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcchH
Confidence 222333 33479999999999999999999999999887654
No 197
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.72 E-value=0.033 Score=73.66 Aligned_cols=104 Identities=27% Similarity=0.424 Sum_probs=83.6
Q ss_pred EEEEEecCccchhhhcCCCCcEEEEEe--------cCCchhh----cCCCCceEEEeCCCCCCCCCCccccchhhhhccC
Q 000265 1429 IHIKLTGSAGQSVGAFLCPGILLELEG--------DSNDYVG----KGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGA 1496 (1760)
Q Consensus 1429 i~i~~~G~aGq~~Gaf~~~G~~i~v~G--------~A~DyvG----kgmsGG~IvV~g~~~~~~~~~~~~i~Gn~~~yGa 1496 (1760)
|+|+++|++-+++|-.| .|+.|+|.= +-|-.|| -|-.+|.+.++|-++.+|. +-|
T Consensus 1391 i~~~L~GdaNDYVGKgl-sGG~iVI~Ppk~s~fkpeEn~IiGNvclYGATsG~~f~~G~AgERFa------VRN------ 1457 (2142)
T KOG0399|consen 1391 ITLRLEGDANDYVGKGL-SGGKIVIYPPKASSFKPEENTIIGNVCLYGATSGDAFFRGVAGERFA------VRN------ 1457 (2142)
T ss_pred cEEEEeccccchhcccc-cCCeEEEeCCccCCCCcccceEEcceeeecccccceEEeccccceee------eec------
Confidence 67889999999999999 788988753 2244555 3789999999999777664 333
Q ss_pred cccEEEEecccccccccccCCcEEEEcC-CCccccccccCcEEEEeCCCCC
Q 000265 1497 TSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGR 1546 (1760)
Q Consensus 1497 tgG~i~v~G~aGeR~gvr~sG~~iVV~G-~Gd~~~eyMtgG~ivVlG~~G~ 1546 (1760)
+|-.+.|.|. |+..|.-|.||.+||=| +|-....-|+||...+|-.-+.
T Consensus 1458 SgA~aVVEg~-GDh~cEYMTGG~vVVLgk~grN~aAgmsGGiAY~ld~d~~ 1507 (2142)
T KOG0399|consen 1458 SGANAVVEGV-GDHGCEYMTGGRVVVLGKTGRNFAAGMSGGIAYLLDEDDD 1507 (2142)
T ss_pred cCceeeeeec-cCccceeecCCEEEEEcccchhhhhcccCceEEEEccccc
Confidence 5667888887 99999999999988877 5888888999999999977655
No 198
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.71 E-value=0.065 Score=65.85 Aligned_cols=104 Identities=13% Similarity=0.009 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhC-CCCceEEEEccc---c-----CH-----HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCH
Q 000265 1140 LAQLIYDLKNAN-PGARISVKLVSE---A-----GV-----GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPW 1205 (1760)
Q Consensus 1140 LaqlI~~Lk~~~-p~~pV~VKlv~~---~-----Gv-----g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~ 1205 (1760)
+.++|..+|+.. ++.||.||+.+. . |. ..++..+.++|+|+|.|++. . ...+ ...|.++
T Consensus 197 ~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g--~-~~~~----~~~~~~~ 269 (361)
T cd04747 197 AAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTR--R-FWEP----EFEGSEL 269 (361)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCC--C-ccCC----CcCccch
Confidence 567888899886 467999999741 0 11 12445578899999998763 1 1111 1112222
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCc------------------CCHHHHHHHHHcC-CCccccchhHHH
Q 000265 1206 ELGLAETHQTLVANDLRGRTILQTDGQL------------------KTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1206 ~~~Laev~q~L~~~glr~rV~LiadGGI------------------rtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
. ....+.+. .++||++.|+| +|..++-+++.-| ||.|++||+++.
T Consensus 270 ~-~~~~~k~~-------~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 270 N-LAGWTKKL-------TGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred h-HHHHHHHH-------cCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 1 12223332 25899999999 5999999999977 999999999886
No 199
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=95.70 E-value=0.073 Score=60.20 Aligned_cols=95 Identities=24% Similarity=0.258 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccC------HHHHHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEAG------VGVIASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELGLA 1210 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~G------vg~iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~La 1210 (1760)
+.+.+.|..+++...+.| +|.+-+.+ +...+..+.++|||+|..+ |.. ..|++ ++....+.
T Consensus 101 ~~~~~ei~~v~~~~~g~~--lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~-~~~at---------~~~v~~~~ 168 (203)
T cd00959 101 EAVYEEIAAVVEACGGAP--LKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFG-PGGAT---------VEDVKLMK 168 (203)
T ss_pred HHHHHHHHHHHHhcCCCe--EEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCC-CCCCC---------HHHHHHHH
Confidence 344555666666543344 44443322 2334556899999999885 442 12221 12223333
Q ss_pred HHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCcccc
Q 000265 1211 ETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGF 1252 (1760)
Q Consensus 1211 ev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~ 1252 (1760)
++. +.+++|-++|||+|..++...+.+||+.+|.
T Consensus 169 ~~~--------~~~v~ik~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 169 EAV--------GGRVGVKAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred HHh--------CCCceEEEeCCCCCHHHHHHHHHhChhhccC
Confidence 332 2479999999999999999999999999874
No 200
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=95.69 E-value=0.011 Score=70.22 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccc-cCHHHHHHHHHHcCCCEEEEe------------------cCCCCC--CCCc
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSE-AGVGVIASGVVKGHADHVLIS------------------GHDGGT--GASR 1194 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~-~Gvg~iA~~aakaGAD~IvIs------------------G~~GGT--Gas~ 1194 (1760)
+++-+.+.-.|++... ..|++-|..++ .++-.+|..+.+.|+.+|... +.+|.+ |+-+
T Consensus 257 ~p~v~~EvC~Wi~A~~-~Ip~~~kmTPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S 335 (471)
T KOG1799|consen 257 CPIVDCEVCGWINAKA-TIPMVSKMTPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYS 335 (471)
T ss_pred ChhhhHHHhhhhhhcc-ccccccccCCCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCcc
Confidence 3455567777887654 67888888763 456667777777777776431 112211 1111
Q ss_pred cccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCC
Q 000265 1195 WTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCP 1274 (1760)
Q Consensus 1195 ~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP 1274 (1760)
..++. | .+|+.+....... +..+|.+.|||-||.|.+..++||+.-|++.|+.|.-
T Consensus 336 ~~AvR----P--IAl~~V~~IA~~m---~~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~--------------- 391 (471)
T KOG1799|consen 336 YKAVR----P--IALAKVMNIAKMM---KEFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMH--------------- 391 (471)
T ss_pred ccccc----h--HHHHHHHHHHHHh---hcCccccccCcccccchhhHhhcCCcHhhhhhHHHhc---------------
Confidence 12222 3 3555555443332 2578999999999999999999999999999987751
Q ss_pred CcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCChhhhcCCC
Q 000265 1275 VGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325 (1760)
Q Consensus 1275 ~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~si~ELigr~ 1325 (1760)
+.-+| ..+..||+.+|.+.|+.+|+|..|.+
T Consensus 392 ----------------~~~~V----~~~Ca~LK~~m~~~~~~ti~~~~G~S 422 (471)
T KOG1799|consen 392 ----------------GYGHV----KTLCAELKDFMKQHNFSTIEEFRGHS 422 (471)
T ss_pred ----------------CcchH----HHHHHHHHHHHHHcCchhhhhccCcc
Confidence 12333 34567999999999999999998876
No 201
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=95.69 E-value=0.059 Score=63.18 Aligned_cols=76 Identities=20% Similarity=0.041 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH-
Q 000265 1166 VGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA- 1243 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl- 1243 (1760)
....+..+.+.|++.|++.+-+- ||. -| |-...+.++.+. .++|||++|||++..|+.+++
T Consensus 154 ~~e~~~~~~~~g~~~ii~~~i~~~G~~---------~G-~d~~~i~~~~~~-------~~ipvIasGGv~s~eD~~~l~~ 216 (258)
T PRK01033 154 PLELAKEYEALGAGEILLNSIDRDGTM---------KG-YDLELLKSFRNA-------LKIPLIALGGAGSLDDIVEAIL 216 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEccCCCCCc---------CC-CCHHHHHHHHhh-------CCCCEEEeCCCCCHHHHHHHHH
Confidence 44667778899999999976533 221 23 233455555554 259999999999999999999
Q ss_pred HcCCCccccchhHHH
Q 000265 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
..|+++|.+|+++.+
T Consensus 217 ~~GvdgVivg~a~~~ 231 (258)
T PRK01033 217 NLGADAAAAGSLFVF 231 (258)
T ss_pred HCCCCEEEEcceeee
Confidence 899999999999876
No 202
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=95.68 E-value=0.048 Score=64.48 Aligned_cols=102 Identities=20% Similarity=0.150 Sum_probs=70.9
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHH--HHHHHHcCCCEEEEecCCCCCCCCcc---------------------c-
Q 000265 1141 AQLIYDLKNANPGARISVKLVSEAGVGVI--ASGVVKGHADHVLISGHDGGTGASRW---------------------T- 1196 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i--A~~aakaGAD~IvIsG~~GGTGas~~---------------------~- 1196 (1760)
.++++..|..+ +.|+.. |+.++ |..+.+.|||.|--.|- .|||.-.- +
T Consensus 110 d~~~~~~K~~f-~~~fma------d~~~l~EAlrai~~GadmI~Ttge-~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~ 181 (293)
T PRK04180 110 DEEYHIDKWDF-TVPFVC------GARNLGEALRRIAEGAAMIRTKGE-AGTGNVVEAVRHMRQINGEIRRLTSMSEDEL 181 (293)
T ss_pred HHHHHHHHHHc-CCCEEc------cCCCHHHHHHHHHCCCCeeeccCC-CCCccHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 36777888876 666633 33333 45688999999977776 56654311 0
Q ss_pred --cccccCCCHHHHHHHHHHHHHhCCCCCceEEE--EcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1197 --GIKNAGLPWELGLAETHQTLVANDLRGRTILQ--TDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1197 --si~~~GlP~~~~Laev~q~L~~~glr~rV~Li--adGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
.-+..+.|+ ..|.++.+. .++||+ +.|||.|+.|+..++.+||++|.+|++++-
T Consensus 182 ~~~a~~~~~~~-elL~ei~~~-------~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 182 YTAAKELQAPY-ELVKEVAEL-------GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred HhhccccCCCH-HHHHHHHHh-------CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 011234443 456666654 258887 999999999999999999999999998764
No 203
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.65 E-value=0.056 Score=72.29 Aligned_cols=108 Identities=14% Similarity=0.076 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhC-CCCceEEEEccc----cC--H---HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCC-HHH
Q 000265 1139 DLAQLIYDLKNAN-PGARISVKLVSE----AG--V---GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLP-WEL 1207 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~-p~~pV~VKlv~~----~G--v---g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP-~~~ 1207 (1760)
-+.++|..+|+.. ++.||.||+.+. .| . -.+|..+.++|+|+|.|++ |++..... . ..+.. ...
T Consensus 603 ~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~--g~~~~~~~--~-~~~~~~~~~ 677 (765)
T PRK08255 603 YPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSS--GQVSKDEK--P-VYGRMYQTP 677 (765)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCC--CCCCcCCC--C-CcCccccHH
Confidence 3567788888876 467999999752 12 1 1356678899999999985 33322110 0 11111 111
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000265 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
...++.+. .++||++.|+|.++.++-+++.-| ||.|+||+++|.
T Consensus 678 ~~~~ik~~-------~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 678 FADRIRNE-------AGIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred HHHHHHHH-------cCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 11222222 258999999999999999999987 999999999886
No 204
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=95.50 E-value=0.059 Score=62.54 Aligned_cols=77 Identities=19% Similarity=0.172 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
.-..+|....+.|||-|.|---++-.|. + +-...+.++.+.+ .+||+++|||+|-+|+-+++.
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~---------~-~n~~~i~~i~~~~-------~~pv~vgGGirs~edv~~~l~ 95 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGR---------G-SNRELLAEVVGKL-------DVKVELSGGIRDDESLEAALA 95 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCC---------C-ccHHHHHHHHHHc-------CCCEEEcCCCCCHHHHHHHHH
Confidence 3446778888899998765322221111 1 2234556665542 489999999999999999999
Q ss_pred cCCCccccchhHHH
Q 000265 1245 LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~ 1258 (1760)
+||+.|.+||+.+-
T Consensus 96 ~Ga~kvviGs~~l~ 109 (241)
T PRK14024 96 TGCARVNIGTAALE 109 (241)
T ss_pred CCCCEEEECchHhC
Confidence 99999999998664
No 205
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=95.26 E-value=0.059 Score=62.93 Aligned_cols=78 Identities=18% Similarity=0.113 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
....+|....+.|+|.|.+...++.... +-+-...+.++.+.. .+||+++|||++..|+.+++.
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~---------~~~n~~~i~~i~~~~-------~~pv~~~GGi~s~~d~~~~~~ 94 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEG---------RTTMIDVVERTAETV-------FIPLTVGGGIKSIEDVDKLLR 94 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCccccc---------ChhhHHHHHHHHHhc-------CCCEEEECCCCCHHHHHHHHH
Confidence 4556788888999999998766543100 112334455555542 589999999999999999999
Q ss_pred cCCCccccchhHHH
Q 000265 1245 LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~ 1258 (1760)
+||+.|.+||+++-
T Consensus 95 ~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 95 AGADKVSINTAAVK 108 (254)
T ss_pred cCCCEEEEChhHhh
Confidence 99999999998764
No 206
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.15 E-value=0.012 Score=75.86 Aligned_cols=56 Identities=25% Similarity=0.425 Sum_probs=48.1
Q ss_pred cccCccccccCCCCCCHHHHhcCchhhccCCCChhHHHHHHhhhcCCCC----CcccCCCCCC
Q 000265 1701 HRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGT----PFCHQVCIAP 1759 (1760)
Q Consensus 1701 ~~gF~~~~R~~~~~r~~~~R~~Df~Ev~~~l~~~~~a~~QAaRCMdCG~----PfC~~~~gCP 1759 (1760)
...|-..+|..++.+++++|..+|+|+..++ +++++..|+.|||.|+. ..|.. .||
T Consensus 464 ~~~~~~~~r~~~~~~~~~~r~~~f~~~~~~~-~~~~~~~~~~rCl~C~~c~~C~~C~~--~Cp 523 (564)
T PRK12771 464 LWYFTDAPRAQRPELDADERVGDFDEVLGGL-TEEEARQEAARCLSCGNCFECDNCYG--ACP 523 (564)
T ss_pred ccccCcccccccccCCHHHHhcChhhhhccC-ChhhhhhhcccCcccccccccchhhh--hCC
Confidence 3556667899999999999999999999999 99999999999999953 33666 677
No 207
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=95.08 E-value=0.16 Score=56.57 Aligned_cols=100 Identities=16% Similarity=0.121 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
+.+.+++..+|+. +.++++=+. ++....-+..+.+.|+|.|.+. +..+++.. +......+.++.+.
T Consensus 90 ~~~~~~i~~~~~~--g~~~~v~~~-~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~---------~~~~~~~i~~~~~~- 156 (202)
T cd04726 90 STIKKAVKAAKKY--GKEVQVDLI-GVEDPEKRAKLLKLGVDIVILHRGIDAQAAG---------GWWPEDDLKKVKKL- 156 (202)
T ss_pred HHHHHHHHHHHHc--CCeEEEEEe-CCCCHHHHHHHHHCCCCEEEEcCcccccccC---------CCCCHHHHHHHHhh-
Confidence 4566677777765 556655321 1222233334788899999883 33333311 11223444444432
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
.+++++++|||+ ..++..++..||+.|.+|++++
T Consensus 157 ------~~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 157 ------LGVKVAVAGGIT-PDTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred ------cCCCEEEECCcC-HHHHHHHHhcCCCEEEEeehhc
Confidence 258999999995 9999999999999999999853
No 208
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=95.07 E-value=0.13 Score=60.40 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccC-------HHHHHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAG-------VGVIASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELG 1208 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~G-------vg~iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~ 1208 (1760)
++.+.+.|..+++... .++.+|.+-+.+ +......+.++|||+|.-| |. ++.|++ ...
T Consensus 114 ~~~v~~ei~~v~~~~~-~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf-~~~gAt------------~ed 179 (257)
T PRK05283 114 EQVGFELVKACKEACA-ANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGK-VPVNAT------------LEA 179 (257)
T ss_pred HHHHHHHHHHHHHHhC-CCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCC-CCCCCC------------HHH
Confidence 3455666677776642 246778776543 2223445889999999764 44 323332 223
Q ss_pred HHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccc
Q 000265 1209 LAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFG 1251 (1760)
Q Consensus 1209 Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg 1251 (1760)
+....+.+++.+..++|-|=++|||||..++...+.+|.+..|
T Consensus 180 v~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~lg 222 (257)
T PRK05283 180 ARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEILG 222 (257)
T ss_pred HHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHHhC
Confidence 3334445444445568999999999999999999999987653
No 209
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.04 E-value=0.1 Score=64.22 Aligned_cols=187 Identities=19% Similarity=0.132 Sum_probs=110.4
Q ss_pred ccCCCCCCCCCCCCccccc-----cceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCccccCcCCCCCCchhh
Q 000265 990 KEADVKIPLEEVEPASEIV-----KRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKR 1064 (1760)
Q Consensus 990 ~~~~~~i~~~eVe~~t~i~-----~Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~~~~~~g~~~~~~ 1064 (1760)
.+.++.++.++||++..+- .||++++|..=+ +. .+|++++++|++...+..+.. .+.. + ..
T Consensus 24 vp~~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gVt-~~----~la~avs~~GglGvl~~~gl~-~~~~---~-----~e 89 (368)
T PRK08649 24 VPSRRTRDPEDVSTSWQIDAYRFEIPIIASPMDAVV-SP----ETAIELGKLGGLGVLNLEGLW-TRYE---D-----PE 89 (368)
T ss_pred eCCCCCCCHHHceeeeeecceeccCcEeccCCcccC-CH----HHHHHHHhCCCceEEeecccc-ccCC---C-----HH
Confidence 3346788889999887653 399999997422 23 599999999998666522211 0110 0 01
Q ss_pred hheeecccCCcCCChhhhcCchhHHHhhhccCCCCCCCCCCCccchHHHHHHhCCCCcccccCCCCCCCCCCHHHHHHHH
Q 000265 1065 SAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLI 1144 (1760)
Q Consensus 1065 s~IkQvasgrFGVt~~~L~~a~~iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~pG~~lisP~~hhDiySiedLaqlI 1144 (1760)
.+..|+.... . ++. ...++..+.. | .+++.+.++|
T Consensus 90 ~l~~qi~~~~----~-----~~~-------------------------~~~~~~~~~~-----P------~~p~l~~~iv 124 (368)
T PRK08649 90 PILDEIASLG----K-----DEA-------------------------TRLMQELYAE-----P------IKPELITERI 124 (368)
T ss_pred HHHHHHHhcC----c-----HHH-------------------------HHHHHHhhcC-----C------CCHHHHHHHH
Confidence 1223332110 0 000 1111111100 1 3466678899
Q ss_pred HHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCC--CHHHHHHHHHHHHHhCCCC
Q 000265 1145 YDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGL--PWELGLAETHQTLVANDLR 1222 (1760)
Q Consensus 1145 ~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~Gl--P~~~~Laev~q~L~~~glr 1222 (1760)
..+|.. .++|.+++.+ ......+..+.++|+|+|+|+|..--+ .|.+. -|.. +.+..+ +.
T Consensus 125 ~~~~~~--~V~v~vr~~~-~~~~e~a~~l~eaGvd~I~vhgrt~~~--------~h~~~~~~~~~-i~~~ik---~~--- 186 (368)
T PRK08649 125 AEIRDA--GVIVAVSLSP-QRAQELAPTVVEAGVDLFVIQGTVVSA--------EHVSKEGEPLN-LKEFIY---EL--- 186 (368)
T ss_pred HHHHhC--eEEEEEecCC-cCHHHHHHHHHHCCCCEEEEeccchhh--------hccCCcCCHHH-HHHHHH---HC---
Confidence 999885 4455555421 235567888999999999998742110 01110 1222 333322 21
Q ss_pred CceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1223 GRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1223 ~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+++||+ |++.|..++.+++.+|||+|.+|..
T Consensus 187 -~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 187 -DVPVIV-GGCVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred -CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 488998 9999999999999999999988864
No 210
>PLN02411 12-oxophytodienoate reductase
Probab=94.98 E-value=0.17 Score=62.92 Aligned_cols=109 Identities=11% Similarity=0.047 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhCCCCceEEEEcccc-------C--H---HHHHHHHHHc------CCCEEEEecCCCCCCCCcccccccc
Q 000265 1140 LAQLIYDLKNANPGARISVKLVSEA-------G--V---GVIASGVVKG------HADHVLISGHDGGTGASRWTGIKNA 1201 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~-------G--v---g~iA~~aaka------GAD~IvIsG~~GGTGas~~~si~~~ 1201 (1760)
+.++|..+|+..+.-.|+||+.+.. + + .+++..+.++ |+|+|.||...-. ....... ...
T Consensus 218 ~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~-~~~~~~~-~~~ 295 (391)
T PLN02411 218 LMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYT-AYGQTES-GRH 295 (391)
T ss_pred HHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCccc-ccCCCcc-ccc
Confidence 4577888888875446999997521 1 1 1234444442 5999999863210 0000000 011
Q ss_pred CCC-H-HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000265 1202 GLP-W-ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1202 GlP-~-~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
+.+ + .....++.+. .++||++.|+| +..+..+++.-| ||.|+||++++.
T Consensus 296 ~~~~~~~~~a~~ik~~-------v~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 296 GSEEEEAQLMRTLRRA-------YQGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred CCccchhHHHHHHHHH-------cCCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 111 1 1111223332 15799999999 678888889889 999999999887
No 211
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=94.97 E-value=0.077 Score=61.24 Aligned_cols=77 Identities=13% Similarity=0.095 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
....+|..+.++|+|.|++..-++ +++. + +-...+.++.+. + ++||+++|||++..|+.+.+
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~---------~-~~~~~i~~i~~~-----~--~~pv~~~GGI~s~~d~~~~l 90 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGR---------E-TMLDVVERVAEE-----V--FIPLTVGGGIRSLEDARRLL 90 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccC---------c-ccHHHHHHHHHh-----C--CCCEEEeCCCCCHHHHHHHH
Confidence 455678889999999887755543 2211 1 222344444443 1 48999999999999999999
Q ss_pred HcCCCccccchhHHH
Q 000265 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
..||+.|.+|++++.
T Consensus 91 ~~G~~~v~ig~~~~~ 105 (243)
T cd04731 91 RAGADKVSINSAAVE 105 (243)
T ss_pred HcCCceEEECchhhh
Confidence 999999999997664
No 212
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.91 E-value=0.091 Score=61.21 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
....+|..+.++|||.|.|-.-++ +++. + +-...+.++.+.. ++||+++|||+|..|+.+++
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~---------~-~~~~~i~~i~~~~-------~ipv~~~GGi~s~~~~~~~l 93 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGR---------D-TMLDVVERVAEQV-------FIPLTVGGGIRSVEDARRLL 93 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccC---------c-chHHHHHHHHHhC-------CCCEEeeCCCCCHHHHHHHH
Confidence 445678888899999999977654 2211 1 2234555555441 58999999999999999999
Q ss_pred HcCCCccccchhHHH
Q 000265 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
..||+.|.+||.++.
T Consensus 94 ~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 94 RAGADKVSINSAAVA 108 (253)
T ss_pred HcCCCEEEEChhHhh
Confidence 999999999998665
No 213
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=94.90 E-value=0.23 Score=55.73 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
..+.+++...++. +.++.+-+....-....+..+.+.|+|+|.+. |..|. .++.++...+.+..+.+
T Consensus 89 ~~~~~~i~~~~~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~----------~~~~~~~~~i~~l~~~~ 156 (206)
T TIGR03128 89 ATIKGAVKAAKKH--GKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQ----------AKGQNPFEDLQTILKLV 156 (206)
T ss_pred HHHHHHHHHHHHc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcc----------cCCCCCHHHHHHHHHhc
Confidence 3456777777775 67777764321112234455778899999874 22211 11222333445554442
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
..+++.++||| +...+...+..||+.|.+|++++
T Consensus 157 ------~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 157 ------KEARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred ------CCCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhc
Confidence 24678889999 88889999999999999999854
No 214
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=94.90 E-value=0.038 Score=67.19 Aligned_cols=111 Identities=16% Similarity=0.113 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhC-CCCceEEEEcccc----CHH--H---HHHHHHHcCCCEEEEecCCCCCCCCccccccccCC--CHH-
Q 000265 1140 LAQLIYDLKNAN-PGARISVKLVSEA----GVG--V---IASGVVKGHADHVLISGHDGGTGASRWTGIKNAGL--PWE- 1206 (1760)
Q Consensus 1140 LaqlI~~Lk~~~-p~~pV~VKlv~~~----Gvg--~---iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~Gl--P~~- 1206 (1760)
+.++|+.+|+.. ++.||.||+.+.- |.. . ++..+.++|+|++.+++...- +.+.......... .+.
T Consensus 202 ~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 280 (341)
T PF00724_consen 202 LLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYV-HWSEPRPSPPFDFEPGYNL 280 (341)
T ss_dssp HHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEE-EEEBTSSTTTTTTTTTTTH
T ss_pred HHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccc-cccccccccccccccchhh
Confidence 456778888775 4667999997631 221 1 355577889999877643221 1111000111111 111
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000265 1207 LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1207 ~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
.....+.+.. ++||++.|||.+...+.++++-| ||.|+||+++|.
T Consensus 281 ~~a~~ik~~~-------~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 281 DLAEAIKKAV-------KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA 326 (341)
T ss_dssp HHHHHHHHHH-------SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred hhhhhhhhhc-------CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh
Confidence 1222222321 58999999999999999999999 999999999887
No 215
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=94.87 E-value=0.22 Score=58.57 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
.+++.+++...+.. +.-+.|=+ ..... +..+.++|+|+|-+.+.+=.| .... .....+..+.
T Consensus 146 ~~~l~~li~~a~~l--Gl~~lvev---h~~~E-~~~A~~~gadiIgin~rdl~~----------~~~d-~~~~~~l~~~- 207 (260)
T PRK00278 146 DEQLKELLDYAHSL--GLDVLVEV---HDEEE-LERALKLGAPLIGINNRNLKT----------FEVD-LETTERLAPL- 207 (260)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEe---CCHHH-HHHHHHcCCCEEEECCCCccc----------ccCC-HHHHHHHHHh-
Confidence 46778888887765 44444443 22333 355889999999875432111 1111 2223333332
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+...+++++-|||.|..|+.+++.+||++|.+|+++|-
T Consensus 208 ----~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 208 ----IPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMR 245 (260)
T ss_pred ----CCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 22347899999999999999999999999999998775
No 216
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=94.80 E-value=0.21 Score=61.57 Aligned_cols=101 Identities=10% Similarity=0.021 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCCCceEEEEccc-------cCH------HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHH
Q 000265 1140 LAQLIYDLKNANPGARISVKLVSE-------AGV------GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE 1206 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~-------~Gv------g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~ 1206 (1760)
+.++|+.+|+..+.-+|.||+.+. .|. ..++..+.++|+|+|.|+..+--+ ..+.+.
T Consensus 212 ~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~---------~~~~~~- 281 (362)
T PRK10605 212 VLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAG---------GEPYSD- 281 (362)
T ss_pred HHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccC---------CccccH-
Confidence 456778888877555799998642 122 223456778999999998631100 001111
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-CCccccchhHHH
Q 000265 1207 LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG-AEEFGFSTAPLI 1258 (1760)
Q Consensus 1207 ~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG-AdaVg~GTa~L~ 1258 (1760)
..-.++.+. ..+||++.|++ |...+.+++.-| ||.|+|||+++.
T Consensus 282 ~~~~~ik~~-------~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 282 AFREKVRAR-------FHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred HHHHHHHHH-------CCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 111222222 24789999997 999999999999 999999999887
No 217
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.72 E-value=0.21 Score=58.22 Aligned_cols=75 Identities=16% Similarity=0.005 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000265 1167 GVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
-..+..+.++|++.|++...+- ||.. |.. ...+.++.+. ..+|||+.||+++..|+.+++..
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~---------g~d-~~~i~~~~~~-------~~ipvia~GGv~s~~d~~~~~~~ 218 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKN---------GYD-LELTRAVSDA-------VNVPVIASGGAGNLEHFVEAFTE 218 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCC---------CcC-HHHHHHHHhh-------CCCCEEEECCCCCHHHHHHHHHh
Confidence 3455678899999999977542 3321 222 3455555554 25899999999999999999975
Q ss_pred -CCCccccchhHHH
Q 000265 1246 -GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 -GAdaVg~GTa~L~ 1258 (1760)
||++|.+|+++..
T Consensus 219 ~G~~gvivg~al~~ 232 (253)
T PRK02083 219 GGADAALAASIFHF 232 (253)
T ss_pred CCccEEeEhHHHHc
Confidence 9999999998664
No 218
>PLN02591 tryptophan synthase
Probab=94.58 E-value=0.9 Score=53.49 Aligned_cols=49 Identities=14% Similarity=0.019 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHh
Q 000265 1209 LAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1209 Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
+.+..+.+++. .++||.+--||+|+.||.+++.+|||+|-+|++++-.+
T Consensus 177 ~~~~i~~vk~~---~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i 225 (250)
T PLN02591 177 VESLLQELKEV---TDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKAL 225 (250)
T ss_pred HHHHHHHHHhc---CCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhh
Confidence 34444444432 36899999999999999999999999999999987543
No 219
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=94.57 E-value=0.31 Score=56.75 Aligned_cols=108 Identities=11% Similarity=0.016 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
+|++..++..+|+.. ...++=+.+.+....+ ..+.+...|+|.+-+..|+||... ........-+.++.+.
T Consensus 115 ~ee~~~~~~~~~~~g--~~~i~~i~P~T~~~~i-~~i~~~~~~~vy~~s~~g~tG~~~-----~~~~~~~~~i~~lr~~- 185 (242)
T cd04724 115 PEEAEEFREAAKEYG--LDLIFLVAPTTPDERI-KKIAELASGFIYYVSRTGVTGART-----ELPDDLKELIKRIRKY- 185 (242)
T ss_pred HHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHH-HHHHhhCCCCEEEEeCCCCCCCcc-----CCChhHHHHHHHHHhc-
Confidence 477788888888873 3333333333333333 345565678777766667776532 1111222333333332
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHh
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
.++||+++|||++..++.++... ||+|-+|++++--+
T Consensus 186 ------~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~ 222 (242)
T cd04724 186 ------TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKII 222 (242)
T ss_pred ------CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHH
Confidence 26899999999999999999999 99999999887543
No 220
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=94.55 E-value=0.071 Score=65.20 Aligned_cols=95 Identities=20% Similarity=0.191 Sum_probs=67.2
Q ss_pred HhhccCccCCCCChHHHHHHHHHHHHHcCC---CHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEec
Q 000265 383 MKKLLPIVDVSSSDSGAFDGVLELLVRAGR---SLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFT 459 (1760)
Q Consensus 383 l~~~~pi~~~~~SDSe~ld~~Le~l~~~g~---sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~t 459 (1760)
++..+-. +.+.+|+|+++.++..+.+.|- ++..+++.++.-. ++ .+++.+| +||.+.+..
T Consensus 244 m~ar~~~-~~s~~~~e~~a~l~p~~~~~~sDs~~~dn~lE~l~~~G-----------~~--l~~a~~m---~~P~aw~~~ 306 (371)
T COG0067 244 LEARGYK-FESPTDGEVLAKLLPILMRGGSDSASLDNALELLLLGG-----------RD--LYHAAML---LGPEAWVVG 306 (371)
T ss_pred HHHhhcc-cccCccHHHHHHHHHHhcccCCcchhhhHHHHHHHhcC-----------cC--chhHHHh---cCchhhccC
Confidence 4444433 4789999999999997776552 3334444332110 00 3566777 999776643
Q ss_pred ---CCceEEEccCCCCCCCceEEEEeCCEEEEEeccccc
Q 000265 460 ---DGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVV 495 (1760)
Q Consensus 460 ---dG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~gal 495 (1760)
+....++..|+.+|||. |.+..+..+..+||.+++
T Consensus 307 ~~~~~~~~afye~~~~l~ep-wdGpa~~~f~dgse~gA~ 344 (371)
T COG0067 307 TDMDPEGRAFYEDHSALMEP-WDGPADIVFTDGSEEGAI 344 (371)
T ss_pred CCCCcceEEEEehhhhCCCC-ccCCcceeEEeeeeeeee
Confidence 35667778999999999 999999999999999998
No 221
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=94.44 E-value=0.74 Score=57.18 Aligned_cols=140 Identities=18% Similarity=0.237 Sum_probs=103.1
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000265 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|-++++++++|++...-.+-.+-+ .. .+.|..|++.|+..|++|..+-....-.+|++.++
T Consensus 237 ~~~~tW~~i~~lr~~~~~pvivKgV----------~~--------~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L 298 (383)
T cd03332 237 GPSLTWEDLAFLREWTDLPIVLKGI----------LH--------PDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDAL 298 (383)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEecC----------CC--------HHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHH
Confidence 5889999999999842111111111 00 15678889999999999976543334578888888
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000265 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
-.+...+- .++-||+ +|-+|.-.|++-.|-+||++| .|+|- .|.. ..++.+.+
T Consensus 299 ~ei~~~~~-----~~~~vi~-dGGIr~G~Dv~KALaLGA~~v~iGr~~l~-----~l~~-------------~G~~gv~~ 354 (383)
T cd03332 299 PEIVEAVG-----DRLTVLF-DSGVRTGADIMKALALGAKAVLIGRPYAY-----GLAL-------------GGEDGVEH 354 (383)
T ss_pred HHHHHHhc-----CCCeEEE-eCCcCcHHHHHHHHHcCCCEEEEcHHHHH-----HHHh-------------ccHHHHHH
Confidence 87776642 3577777 688999999999999999999 46652 1211 24678999
Q ss_pred HHHHHHHHHHHHHHhhchhhhhccc
Q 000265 845 YFKASNYGMMKVLAKMGISTLASYK 869 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~SY~ 869 (1760)
+++-+...|-..|.-+|+.+|..-+
T Consensus 355 ~l~~l~~El~~~m~l~G~~~i~~l~ 379 (383)
T cd03332 355 VLRNLLAELDLTMGLAGIRSIAELT 379 (383)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHhC
Confidence 9999999999999999999998743
No 222
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=94.26 E-value=0.33 Score=61.01 Aligned_cols=226 Identities=21% Similarity=0.265 Sum_probs=124.3
Q ss_pred ceEecCCCcccCcHHHHHHHHHHHHHcCC-ceeccCCCCCccccCcCCCCCCchhhhheeecccCC-cCCChhhhcCchh
Q 000265 1010 RFCTGAMSYGSISLEAHTTLATAMNKIGG-KSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGR-FGVSSYYLTNADE 1087 (1760)
Q Consensus 1010 Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~-~s~sGeGge~~e~~~~~~~g~~~~~~s~IkQvasgr-FGVt~~~L~~a~~ 1087 (1760)
|+++++|+=-...++ +..|+.++|- .-..|-|..++|.+. +...+..-++-+|+ +++|..|+. ...
T Consensus 36 PillaGMTPtTVdp~----ivAAaAnAGhwaELAGGGq~t~e~~~-------~~i~ql~~~lepG~t~qfN~ifld-pyl 103 (717)
T COG4981 36 PILLAGMTPTTVDPD----IVAAAANAGHWAELAGGGQVTEEIFT-------NAIEQLVSLLEPGRTAQFNSIFLD-PYL 103 (717)
T ss_pred CeeecCCCCCcCCHH----HHHHHhcCCceeeecCCcccCHHHHH-------HHHHHHHhccCCCccceeeEEEec-hHH
Confidence 999999997778884 4455556665 566676777877663 11223344444454 555655442 222
Q ss_pred HHHhhhccCCCCCCCCCCCccchHHHHHHhCCC---CcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCc-eEEEEccc
Q 000265 1088 LQIKMAQGAKPGEGGELPGHKVIGDIAVTRNST---AGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGAR-ISVKLVSE 1163 (1760)
Q Consensus 1088 iqIKiaQGAKpGeGG~Lpg~KV~~~IA~~R~~~---pG~~lisP~~hhDiySiedLaqlI~~Lk~~~p~~p-V~VKlv~~ 1163 (1760)
.+.. .++.+ .|.++|... .|+. |+. .|-|.|+-.++|.+|-.. +.| |.+|-
T Consensus 104 w~~q------------ig~kr---Lv~kara~G~~I~gvv-IsA----GIP~le~A~ElI~~L~~~--G~~yv~fKP--- 158 (717)
T COG4981 104 WKLQ------------IGGKR---LVQKARASGAPIDGVV-ISA----GIPSLEEAVELIEELGDD--GFPYVAFKP--- 158 (717)
T ss_pred hhhc------------CChHH---HHHHHHhcCCCcceEE-Eec----CCCcHHHHHHHHHHHhhc--CceeEEecC---
Confidence 2211 12222 233444322 1222 221 244567788899998554 222 44552
Q ss_pred cCHH-HH--HHHHHHcCCCE-E--EEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHH
Q 000265 1164 AGVG-VI--ASGVVKGHADH-V--LISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGR 1237 (1760)
Q Consensus 1164 ~Gvg-~i--A~~aakaGAD~-I--vIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~ 1237 (1760)
|.- .+ ....+|+.... | .+.|.-+|+|-| | .+.- ..|..++..|+. +++|.|++-|||-|++
T Consensus 159 -GtIeqI~svi~IAka~P~~pIilq~egGraGGHHS-w---eDld----~llL~tYs~lR~---~~NIvl~vGgGiGtp~ 226 (717)
T COG4981 159 -GTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHS-W---EDLD----DLLLATYSELRS---RDNIVLCVGGGIGTPD 226 (717)
T ss_pred -CcHHHHHHHHHHHhcCCCCceEEEEecCccCCccc-h---hhcc----cHHHHHHHHHhc---CCCEEEEecCCcCChh
Confidence 322 12 12355666554 3 334433444432 2 2222 223445555543 5689999999999999
Q ss_pred HHHHHH-----------HcCCCccccchhHHHHhcccc---cc-------------ccccCCCCCcccccChhh
Q 000265 1238 DVAIAA-----------LLGAEEFGFSTAPLITLGCIM---MR-------------KCHKNTCPVGIATQDPVL 1284 (1760)
Q Consensus 1238 DVaKAl-----------aLGAdaVg~GTa~L~Algc~~---~r-------------~ch~~~cP~giatqdp~L 1284 (1760)
|.+-.+ ++=-|++-+||++|++-...- .+ +-..+.-|.|++|-..+|
T Consensus 227 ~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKEatTSp~vK~~lv~t~Gvdd~~W~~~g~a~~Gm~s~rSqL 300 (717)
T COG4981 227 DAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKEATTSPAVKEALVATQGVDDDEWEGTGKAPGGMASVRSQL 300 (717)
T ss_pred hcccccccchhhhcCCCCCCcceeEechhHHhhhhccCCHHHHHHHhhCCCCCchhceecCCCCCceeeehhhh
Confidence 998654 344689999999999854331 11 222355677777765443
No 223
>PRK04302 triosephosphate isomerase; Provisional
Probab=94.26 E-value=0.29 Score=56.17 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCC-CCCCCCccccccccCCCHHHHHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHD-GGTGASRWTGIKNAGLPWELGLAETHQT 1215 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~-GGTGas~~~si~~~GlP~~~~Laev~q~ 1215 (1760)
.+++.+++...+.. +..+++ .+ +-...+..+.+.+.|+|-+-... -||+... .. ++...+.++++.
T Consensus 100 ~~e~~~~v~~a~~~--Gl~~I~-~v---~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~-----~~--~~~~~i~~~~~~ 166 (223)
T PRK04302 100 LADIEAVVERAKKL--GLESVV-CV---NNPETSAAAAALGPDYVAVEPPELIGTGIPV-----SK--AKPEVVEDAVEA 166 (223)
T ss_pred HHHHHHHHHHHHHC--CCeEEE-Ec---CCHHHHHHHhcCCCCEEEEeCccccccCCCC-----Cc--CCHHHHHHHHHH
Confidence 45677888888775 443333 22 22233445778899998764321 1332110 00 112346666666
Q ss_pred HHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1216 L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+++. ..++||++.|||++..++..++..|||+|.+|++++-
T Consensus 167 ir~~--~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~ 207 (223)
T PRK04302 167 VKKV--NPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVK 207 (223)
T ss_pred HHhc--cCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhC
Confidence 6542 2368999999999999999999999999999999875
No 224
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=94.18 E-value=0.23 Score=62.34 Aligned_cols=151 Identities=19% Similarity=0.163 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
.+.+.+...|+. +.++++-+.+.......+..+.+.|+|+|.+. . |.++.. .+......|.++.+.
T Consensus 95 ~~~~~i~~a~~~--G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~-p-g~~~~~-------~~~~~~~~l~~l~~~--- 160 (430)
T PRK07028 95 TIEDAVRAARKY--GVRLMADLINVPDPVKRAVELEELGVDYINVH-V-GIDQQM-------LGKDPLELLKEVSEE--- 160 (430)
T ss_pred HHHHHHHHHHHc--CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-e-ccchhh-------cCCChHHHHHHHHhh---
Confidence 356677777775 55666643332221233456788999999763 2 222111 111112334444332
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcC-CCHHHHHH
Q 000265 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFA-GEPEHVIN 1297 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~-g~~e~V~n 1297 (1760)
-.+||+++||| +...+..++..||+.|.+|++++-+- -|...+ ..+++.+. ..+..+.+
T Consensus 161 ----~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~------------d~~~~~---~~l~~~i~~~~~~~~~~ 220 (430)
T PRK07028 161 ----VSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSA------------DVTEAA---RKIREAIDSGKPVKIDK 220 (430)
T ss_pred ----CCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCC------------CHHHHH---HHHHHHHhccCCccccc
Confidence 14899999999 68899999999999999999855310 011111 12333332 23455666
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhhcC
Q 000265 1298 FFFMLAEELREIMSQLGFRTITEMIG 1323 (1760)
Q Consensus 1298 ~~~~l~~ELr~~Ma~lG~~si~ELig 1323 (1760)
|...+..|+.+.++.+...++.|...
T Consensus 221 ~~~~~~~~~~~~l~~~~t~~i~d~l~ 246 (430)
T PRK07028 221 FKKSLDEEIREIFMQVSTPNISDAMH 246 (430)
T ss_pred cccCCCHHHHHHhcCCCCCcHHhhhh
Confidence 77777788888888888888877543
No 225
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.12 E-value=0.35 Score=57.88 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000265 1140 LAQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
+.+.|..+|+..| ..+|.|-. ..-.-|..++++|||+|.+++. + ...|.++...+++
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv----~tleea~eA~~~GaD~I~LDn~---------------~---~e~l~~av~~~~~ 239 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVET----ETLEQVQEALEYGADIIMLDNM---------------P---VDLMQQAVQLIRQ 239 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEEC----CCHHHHHHHHHcCCCEEEECCC---------------C---HHHHHHHHHHHHh
Confidence 6677888888765 34454442 3334556788999999999843 1 1456666665543
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
. +.+++|.++||| |...+...++.|+|.+.+|+...
T Consensus 240 ~--~~~i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 240 Q--NPRVKIEASGNI-TLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred c--CCCeEEEEECCC-CHHHHHHHHHcCCCEEEEchhhh
Confidence 2 357999999999 79999999999999999998644
No 226
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.11 E-value=0.35 Score=56.12 Aligned_cols=75 Identities=11% Similarity=0.026 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCCEEEEecCC-CCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000265 1167 GVIASGVVKGHADHVLISGHD-GGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~-GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
-..+..+.+.|+..|++.--+ -||.. | |-...+.++.+. ..+||++.||+++..|+.+++.+
T Consensus 151 ~~~~~~~~~~g~~~ii~tdi~~dGt~~---------G-~~~~li~~l~~~-------~~ipvi~~GGi~s~edi~~l~~~ 213 (234)
T PRK13587 151 FSFVRQLSDIPLGGIIYTDIAKDGKMS---------G-PNFELTGQLVKA-------TTIPVIASGGIRHQQDIQRLASL 213 (234)
T ss_pred HHHHHHHHHcCCCEEEEecccCcCCCC---------c-cCHHHHHHHHHh-------CCCCEEEeCCCCCHHHHHHHHHc
Confidence 445666788898887764332 23322 2 223345555443 25899999999999999999999
Q ss_pred CCCccccchhHHH
Q 000265 1246 GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 GAdaVg~GTa~L~ 1258 (1760)
|+++|-+||++.-
T Consensus 214 G~~~vivG~a~~~ 226 (234)
T PRK13587 214 NVHAAIIGKAAHQ 226 (234)
T ss_pred CCCEEEEhHHHHh
Confidence 9999999998653
No 227
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=94.11 E-value=0.78 Score=56.45 Aligned_cols=142 Identities=20% Similarity=0.191 Sum_probs=96.1
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCC-CCccccHHHH
Q 000265 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSS-KRVAVSSLLA 766 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~-~~~~ip~lLa 766 (1760)
.|-++++++++|++.....+-.+ |.. --+.|..+++.|+..|++|..+-.. +..| +++-+
T Consensus 205 ~~~~~~~~l~~lr~~~~~PvivK----------gv~--------~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~-~~~~~ 265 (351)
T cd04737 205 KQKLSPADIEFIAKISGLPVIVK----------GIQ--------SPEDADVAINAGADGIWVSNHGGRQLDGGP-ASFDS 265 (351)
T ss_pred cCCCCHHHHHHHHHHhCCcEEEe----------cCC--------CHHHHHHHHHcCCCEEEEeCCCCccCCCCc-hHHHH
Confidence 35689999999987421111111 110 1167788889999999999764211 1222 23333
Q ss_pred HHHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCccccc---HHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 000265 767 VGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAIC---PYLATEAIWRLQVDGKIPPKASGEFHSKDELVK 843 (1760)
Q Consensus 767 v~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av~---Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1760)
+..|.++ ++.++-||+ +|.+|.--|++-.|-.||++|. |+|- . |.. ..++.+.
T Consensus 266 l~~i~~a-----~~~~i~vi~-dGGIr~g~Di~kaLalGA~~V~iGr~~l~-~----la~-------------~G~~gv~ 321 (351)
T cd04737 266 LPEIAEA-----VNHRVPIIF-DSGVRRGEHVFKALASGADAVAVGRPVLY-G----LAL-------------GGAQGVA 321 (351)
T ss_pred HHHHHHH-----hCCCCeEEE-ECCCCCHHHHHHHHHcCCCEEEECHHHHH-H----Hhh-------------chHHHHH
Confidence 4444333 345677777 6999999999999999999983 4432 2 111 2467788
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhcccccc
Q 000265 844 KYFKASNYGMMKVLAKMGISTLASYKGAQ 872 (1760)
Q Consensus 844 ny~~a~~~GllKvmsKMGIstl~SY~gaq 872 (1760)
++.+-+.+.|...|.-+|+++|+.-++.+
T Consensus 322 ~~l~~l~~El~~~m~l~G~~~i~el~~~~ 350 (351)
T cd04737 322 SVLEHLNKELKIVMQLAGTRTIEDVKRTF 350 (351)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHhCCCC
Confidence 99999999999999999999999876543
No 228
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=94.09 E-value=0.26 Score=54.69 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhCCCCc-eEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1139 DLAQLIYDLKNANPGAR-ISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~p-V~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
++.+.+..+|+..|..+ |.|-.- --.-+..++++|+|+|.+|... | .-+.++.+.|.
T Consensus 65 ~i~~av~~~~~~~~~~~~I~VEv~----~~ee~~ea~~~g~d~I~lD~~~----------------~--~~~~~~v~~l~ 122 (169)
T PF01729_consen 65 GIEEAVKAARQAAPEKKKIEVEVE----NLEEAEEALEAGADIIMLDNMS----------------P--EDLKEAVEELR 122 (169)
T ss_dssp SHHHHHHHHHHHSTTTSEEEEEES----SHHHHHHHHHTT-SEEEEES-C----------------H--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCceEEEEcC----CHHHHHHHHHhCCCEEEecCcC----------------H--HHHHHHHHHHh
Confidence 36678888998888776 766542 2345677999999999999861 1 45677777666
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
..+ .++.|.++||| |...|......|+|.+++|+...
T Consensus 123 ~~~--~~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~ 159 (169)
T PF01729_consen 123 ELN--PRVKIEASGGI-TLENIAEYAKTGVDVISVGSLTH 159 (169)
T ss_dssp HHT--TTSEEEEESSS-STTTHHHHHHTT-SEEEECHHHH
T ss_pred hcC--CcEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhc
Confidence 543 35999999999 67789999999999999998644
No 229
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.02 E-value=0.35 Score=57.87 Aligned_cols=93 Identities=18% Similarity=0.161 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
++.+.|.++|+..|..+|.|-. ..-.-|..++++|||+|.+|+.+ | .-+.++...++.
T Consensus 185 ~i~~ai~~~r~~~~~~kIeVEv----~tl~ea~eal~~gaDiI~LDnm~----------------~--e~vk~av~~~~~ 242 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPCEVEV----DSLEQLDEVLAEGAELVLLDNFP----------------V--WQTQEAVQRRDA 242 (289)
T ss_pred cHHHHHHHHHHhCCCCCEEEEc----CCHHHHHHHHHcCCCEEEeCCCC----------------H--HHHHHHHHHHhc
Confidence 5677888999887777776654 33345667899999999999752 1 344555554443
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhH
Q 000265 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~ 1256 (1760)
. +.++.+.++||| |...|.....+|+|.+.+|...
T Consensus 243 ~--~~~v~ieaSGGI-~~~ni~~yA~tGvD~Is~galt 277 (289)
T PRK07896 243 R--APTVLLESSGGL-TLDTAAAYAETGVDYLAVGALT 277 (289)
T ss_pred c--CCCEEEEEECCC-CHHHHHHHHhcCCCEEEeChhh
Confidence 2 457999999999 7888999999999999999753
No 230
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=93.96 E-value=0.42 Score=55.40 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCC-CCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1166 VGVIASGVVKGHADHVLISGHD-GGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~-GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
....+....+. ++.|++.--+ -||+. | |-...+.++.+. ..+||++.|||++..|+.+++.
T Consensus 148 ~~~~~~~~~~~-~~~li~~di~~~G~~~---------g-~~~~~~~~i~~~-------~~ipvi~~GGi~s~edi~~l~~ 209 (233)
T cd04723 148 PEELLRRLAKW-PEELIVLDIDRVGSGQ---------G-PDLELLERLAAR-------ADIPVIAAGGVRSVEDLELLKK 209 (233)
T ss_pred HHHHHHHHHHh-CCeEEEEEcCccccCC---------C-cCHHHHHHHHHh-------cCCCEEEeCCCCCHHHHHHHHH
Confidence 44556667777 8877664332 23321 2 223445555543 2589999999999999999999
Q ss_pred cCCCccccchhHHH
Q 000265 1245 LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~ 1258 (1760)
+||++|-+||++..
T Consensus 210 ~G~~~vivGsal~~ 223 (233)
T cd04723 210 LGASGALVASALHD 223 (233)
T ss_pred cCCCEEEEehHHHc
Confidence 99999999998654
No 231
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=93.94 E-value=0.43 Score=57.50 Aligned_cols=104 Identities=16% Similarity=0.144 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhCC-CCceEEEEcccc-CHHHHHHHHHHc---CCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHH
Q 000265 1139 DLAQLIYDLKNANP-GARISVKLVSEA-GVGVIASGVVKG---HADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETH 1213 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p-~~pV~VKlv~~~-Gvg~iA~~aaka---GAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~ 1213 (1760)
++.+.+...|+..| ..||.|-.-... .+ .-|..+.++ ++|+|.+|..++..|. ....+.++.
T Consensus 169 ~~~~A~~~~~~~~p~~~~i~vevdt~~~~v-~eal~~~~~~~~~~d~I~lDn~~~~~G~------------~~~~~~~~~ 235 (302)
T cd01571 169 DQVEAWKAFDETYPEDVPRIALIDTFNDEK-EEALKAAKALGDKLDGVRLDTPSSRRGV------------FRYLIREVR 235 (302)
T ss_pred hHHHHHHHHHHHCCCcCCeEEEEeecCcch-HHHHHHHHHhCCCCcEEEECCCCCCCCC------------HHHHHHHHH
Confidence 35667788888877 467766542211 12 223445555 5999999998654332 234567788
Q ss_pred HHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1214 QTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1214 q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
+.|...+. .++.|+++||| |...|.+....|+|.+++|+...
T Consensus 236 ~~l~~~g~-~~~~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~ 277 (302)
T cd01571 236 WALDIRGY-KHVKIFVSGGL-DEEDIKELEDVGVDAFGVGTAIS 277 (302)
T ss_pred HHHHhCCC-CCeEEEEeCCC-CHHHHHHHHHcCCCEEECCcccC
Confidence 88877654 46899999999 99999999999999999999654
No 232
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=93.80 E-value=0.84 Score=56.39 Aligned_cols=140 Identities=17% Similarity=0.173 Sum_probs=99.0
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000265 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|-++++++++|++...-.+-.+-+ . --+.|..|++.|+..|++|-.+-..--..+|++-++
T Consensus 208 ~~~~tW~di~wlr~~~~~PiivKgV----------~--------~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L 269 (367)
T PLN02493 208 DRTLSWKDVQWLQTITKLPILVKGV----------L--------TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISAL 269 (367)
T ss_pred CCCCCHHHHHHHHhccCCCEEeecC----------C--------CHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHH
Confidence 5789999999999853211111111 0 036778899999999999987544322334555555
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000265 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
-.+.+.+ ..++-|++ +|-+|.--|++-.|.+||++| .|+|--.. . ..++.+.+
T Consensus 270 ~ei~~av-----~~~~~vi~-dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~-----~-------------~G~~gv~~ 325 (367)
T PLN02493 270 EEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGRPVVFSLA-----A-------------EGEAGVRK 325 (367)
T ss_pred HHHHHHh-----CCCCeEEE-eCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHH-----h-------------cCHHHHHH
Confidence 5554442 34577777 688999999999999999999 58773111 1 13456889
Q ss_pred HHHHHHHHHHHHHHhhchhhhhccc
Q 000265 845 YFKASNYGMMKVLAKMGISTLASYK 869 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~SY~ 869 (1760)
+.+.+..-|.-.|.-+|..++...+
T Consensus 326 ~l~~l~~el~~~m~l~G~~~i~~l~ 350 (367)
T PLN02493 326 VLQMLRDEFELTMALSGCRSLKEIS 350 (367)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHhC
Confidence 9999999999999999998888753
No 233
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=93.70 E-value=0.4 Score=57.93 Aligned_cols=75 Identities=21% Similarity=0.200 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000265 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
-..|+.++++|+-+|--=+..=|+|. |+.....|..+.+. .+|||++|+||.++.||++|+.||
T Consensus 208 ~~~a~~l~~~g~~avmPl~~pIGsg~---------gv~~p~~i~~~~e~-------~~vpVivdAGIg~~sda~~AmelG 271 (326)
T PRK11840 208 PIAAKRLEDAGAVAVMPLGAPIGSGL---------GIQNPYTIRLIVEG-------ATVPVLVDAGVGTASDAAVAMELG 271 (326)
T ss_pred HHHHHHHHhcCCEEEeeccccccCCC---------CCCCHHHHHHHHHc-------CCCcEEEeCCCCCHHHHHHHHHcC
Confidence 45678899999954433122112322 22233455555443 359999999999999999999999
Q ss_pred CCccccchhHH
Q 000265 1247 AEEFGFSTAPL 1257 (1760)
Q Consensus 1247 AdaVg~GTa~L 1257 (1760)
||+|.+.|+..
T Consensus 272 adgVL~nSaIa 282 (326)
T PRK11840 272 CDGVLMNTAIA 282 (326)
T ss_pred CCEEEEcceec
Confidence 99999999754
No 234
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=93.60 E-value=0.2 Score=56.22 Aligned_cols=75 Identities=19% Similarity=0.101 Sum_probs=49.9
Q ss_pred HHHHHHcCCCEEEEecCC-CCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCC
Q 000265 1170 ASGVVKGHADHVLISGHD-GGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~-GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAd 1248 (1760)
+..+.+.|+|+|.++... ++++.. .........+.++.+.+ ..++|+++||| +..++..++.+||+
T Consensus 117 ~~~a~~~gaD~v~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~------~~~~v~a~GGI-~~~~i~~~~~~Ga~ 183 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFPTPTKKD------AKAPQGLEGLREIRAAV------GDIPIVAIGGI-TPENAPEVLEAGAD 183 (212)
T ss_pred HHHHhHcCCCEEEECCccCCCCCCC------CCCCCCHHHHHHHHHhc------CCCCEEEECCc-CHHHHHHHHHcCCC
Confidence 455778999999886432 111110 00001133455554432 24999999999 79999999999999
Q ss_pred ccccchhHH
Q 000265 1249 EFGFSTAPL 1257 (1760)
Q Consensus 1249 aVg~GTa~L 1257 (1760)
+|.+|++++
T Consensus 184 gv~~gs~i~ 192 (212)
T PRK00043 184 GVAVVSAIT 192 (212)
T ss_pred EEEEeHHhh
Confidence 999999754
No 235
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=93.31 E-value=0.31 Score=55.77 Aligned_cols=77 Identities=14% Similarity=0.027 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCC-CCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDGG-TGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GG-TGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
....+|....+.|+|.|.|..-+|- .|. .+-...+.++.+. ..+||+++|||++-.|+.+++
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~----------~~~~~~i~~i~~~-------~~~pv~~~GGI~~~ed~~~~~ 93 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGK----------PVNLELIEAIVKA-------VDIPVQVGGGIRSLETVEALL 93 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCC----------cccHHHHHHHHHH-------CCCCEEEcCCcCCHHHHHHHH
Confidence 4456777788899999987654331 111 1223445555443 158999999999999999999
Q ss_pred HcCCCccccchhHHH
Q 000265 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
.+||+.|.+|++.+-
T Consensus 94 ~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 94 DAGVSRVIIGTAAVK 108 (233)
T ss_pred HcCCCEEEECchHHh
Confidence 999999999998664
No 236
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=93.26 E-value=0.28 Score=56.09 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
....+|....+.|+|.+.|..-++.-.. .+. -...+.++.+.. .+||+++|||++..|+.+++.
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~--------~~~-~~~~i~~i~~~~-------~~pv~~~GgI~~~e~~~~~~~ 93 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGG--------EPV-NLELIEEIVKAV-------GIPVQVGGGIRSLEDIERLLD 93 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccC--------CCC-CHHHHHHHHHhc-------CCCEEEeCCcCCHHHHHHHHH
Confidence 3346777788899999998755432100 111 123444444431 489999999999999999999
Q ss_pred cCCCccccchhHHH
Q 000265 1245 LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~ 1258 (1760)
.|||.|.+|+..+-
T Consensus 94 ~Gad~vvigs~~l~ 107 (234)
T cd04732 94 LGVSRVIIGTAAVK 107 (234)
T ss_pred cCCCEEEECchHHh
Confidence 99999999998653
No 237
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=93.22 E-value=0.82 Score=52.78 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
++...|..+|+. +...++-+-+.+.+..+..-+ + -+|.|++=+-+-|+|+-.+ + . ....-+.++.+.+.+
T Consensus 94 ~~~~~l~~ik~~--g~k~GlalnP~Tp~~~i~~~l-~-~~D~vlvMtV~PGfgGq~f--i-~---~~lekI~~l~~~~~~ 163 (220)
T PRK08883 94 HVDRTLQLIKEH--GCQAGVVLNPATPLHHLEYIM-D-KVDLILLMSVNPGFGGQSF--I-P---HTLDKLRAVRKMIDE 163 (220)
T ss_pred cHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHH-H-hCCeEEEEEecCCCCCcee--c-H---hHHHHHHHHHHHHHh
Confidence 466778888887 566777776666665554332 2 5798888655555543221 1 1 123456666666554
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
+++ .++|.+||||. ...+.+....|||.+.+|++++
T Consensus 164 ~~~--~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 164 SGR--DIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred cCC--CeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 443 48999999998 8899999999999999999743
No 238
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.21 E-value=1 Score=49.36 Aligned_cols=100 Identities=24% Similarity=0.213 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhC-CCCceEEEEcccc--CHHHHH---HHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHH
Q 000265 1137 IEDLAQLIYDLKNAN-PGARISVKLVSEA--GVGVIA---SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLA 1210 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~-p~~pV~VKlv~~~--Gvg~iA---~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~La 1210 (1760)
.+.+.+.+.++.+.. ++.||.++..+.. ....+. ..+.+.|+|+|..+.....+ ......+.
T Consensus 96 ~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~------------~~~~~~~~ 163 (201)
T cd00945 96 WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGG------------GATVEDVK 163 (201)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCC------------CCCHHHHH
Confidence 566777777777763 3789999986532 223333 33567999999886421111 11122334
Q ss_pred HHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000265 1211 ETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1211 ev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
++.+.. ..++++++.||+.+..++..++.+||+++.+|
T Consensus 164 ~i~~~~-----~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 164 LMKEAV-----GGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHhc-----ccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 443332 22578999999999999999999999999876
No 239
>PLN02979 glycolate oxidase
Probab=93.13 E-value=1.3 Score=54.72 Aligned_cols=141 Identities=18% Similarity=0.190 Sum_probs=98.5
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000265 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|-++++++++|++...-.+-.+-+ + --+.|..|++.|+..|++|-.+-..-...+|++-++
T Consensus 207 ~~~ltW~dl~wlr~~~~~PvivKgV----------------~--~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L 268 (366)
T PLN02979 207 DRTLSWKDVQWLQTITKLPILVKGV----------------L--TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISAL 268 (366)
T ss_pred CCCCCHHHHHHHHhccCCCEEeecC----------------C--CHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHH
Confidence 5789999999999843211111111 0 136788899999999999987643322333555555
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000265 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
-.+.+.+ ..++.|++ +|-+|.--|++-.+-+||++| .|+|.-.. .. .++.+.+
T Consensus 269 ~ei~~~~-----~~~~~Vi~-dGGIr~G~Di~KALALGAdaV~iGrp~L~~la-----~~-------------G~~Gv~~ 324 (366)
T PLN02979 269 EEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGRPVVFSLA-----AE-------------GEAGVRK 324 (366)
T ss_pred HHHHHHh-----CCCCeEEE-eCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHH-----hc-------------CHHHHHH
Confidence 5554442 23577777 688999999999999999999 57773111 11 2455788
Q ss_pred HHHHHHHHHHHHHHhhchhhhhcccc
Q 000265 845 YFKASNYGMMKVLAKMGISTLASYKG 870 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~SY~g 870 (1760)
+.+.+.+-|.-.|.-+|+++++.-+-
T Consensus 325 ~l~~l~~El~~~m~l~G~~~i~el~~ 350 (366)
T PLN02979 325 VLQMLRDEFELTMALSGCRSLKEISR 350 (366)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHhCh
Confidence 89999999999999999988887543
No 240
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=93.11 E-value=0.53 Score=54.37 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1166 VGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
....+..+.+.|+..|++..-+- ||. .|+. ...+.++.+.. ++|||++|||++-.|+..+..
T Consensus 149 ~~~~~~~~~~~g~~~ii~tdi~~dGt~---------~G~d-~~~~~~l~~~~-------~~~viasGGv~~~~Dl~~l~~ 211 (229)
T PF00977_consen 149 LEEFAKRLEELGAGEIILTDIDRDGTM---------QGPD-LELLKQLAEAV-------NIPVIASGGVRSLEDLRELKK 211 (229)
T ss_dssp HHHHHHHHHHTT-SEEEEEETTTTTTS---------SS---HHHHHHHHHHH-------SSEEEEESS--SHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEeeccccCCc---------CCCC-HHHHHHHHHHc-------CCCEEEecCCCCHHHHHHHHH
Confidence 55677789999999988864322 332 2333 34455555542 589999999999999999999
Q ss_pred cCCCccccchhHH
Q 000265 1245 LGAEEFGFSTAPL 1257 (1760)
Q Consensus 1245 LGAdaVg~GTa~L 1257 (1760)
+|+++|-+|+++.
T Consensus 212 ~G~~gvivg~al~ 224 (229)
T PF00977_consen 212 AGIDGVIVGSALH 224 (229)
T ss_dssp TTECEEEESHHHH
T ss_pred CCCcEEEEehHhh
Confidence 9999999999874
No 241
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=92.99 E-value=3 Score=49.61 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
+|+..+++..+++. +...+.=+.++.....+.. .++..-.+|-+-...|=||... -++ ..+.+..+.+
T Consensus 130 ~ee~~~~~~~~~~~--gi~~I~lv~PtT~~eri~~-i~~~a~gFIY~vS~~GvTG~~~-------~~~--~~~~~~i~~i 197 (263)
T CHL00200 130 YEESDYLISVCNLY--NIELILLIAPTSSKSRIQK-IARAAPGCIYLVSTTGVTGLKT-------ELD--KKLKKLIETI 197 (263)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEECCCCCHHHHHH-HHHhCCCcEEEEcCCCCCCCCc-------ccc--HHHHHHHHHH
Confidence 46666777777776 3333333334444444433 3333333555422556565431 112 2344555554
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHh
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
++. -++||.+++||++..++.++...|||+|-+|++++-.+
T Consensus 198 r~~---t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i 238 (263)
T CHL00200 198 KKM---TNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQIL 238 (263)
T ss_pred HHh---cCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHH
Confidence 442 25899999999999999999999999999999987643
No 242
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=92.82 E-value=1 Score=54.08 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=83.4
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---c
Q 000265 734 AEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---C 810 (1760)
Q Consensus 734 ~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~ 810 (1760)
+.|..+.+.|+..|+++.+.-....-.+|.+-++..+.+.+ ..++-||. +|.+|+.-|++-.+-+|||+| -
T Consensus 184 ~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-----~~~ipvia-~GGI~~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 184 EDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAV-----GGRIEVLL-DGGIRRGTDVLKALALGADAVLIGR 257 (299)
T ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh-----cCCCeEEE-eCCCCCHHHHHHHHHcCCCEEEEcH
Confidence 45778889999999999864222223466777777766554 22566666 799999999999999999999 4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhccc
Q 000265 811 PYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYK 869 (1760)
Q Consensus 811 Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~ 869 (1760)
|+|.-. + .. .++.+.+++.-+.+.|...|..+|+++|+..+
T Consensus 258 ~~l~~~-~----~~-------------g~~~v~~~i~~l~~el~~~m~~~G~~~i~~l~ 298 (299)
T cd02809 258 PFLYGL-A----AG-------------GEAGVAHVLEILRDELERAMALLGCASLADLD 298 (299)
T ss_pred HHHHHH-H----hc-------------CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhC
Confidence 655421 1 11 24678899999999999999999999998753
No 243
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=92.80 E-value=0.99 Score=55.54 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=83.8
Q ss_pred HHHHHHHHcCCcEEEEcCCCCC------------------CCCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCcH
Q 000265 734 AEARDAIKEGYTLLVLSDRAFS------------------SKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREV 795 (1760)
Q Consensus 734 ~~a~~av~~G~~iliLsDr~~~------------------~~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re~ 795 (1760)
+.|..+.+.|+..|++|-++-. .....+|.+-++-.+.+++ .++-||+ +|-+|+.
T Consensus 201 ~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~------~~ipvia-~GGI~~~ 273 (352)
T PRK05437 201 ETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL------PDLPIIA-SGGIRNG 273 (352)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc------CCCeEEE-ECCCCCH
Confidence 5566667789999999876410 0123566555555554442 4577777 8999999
Q ss_pred HHHHHHHhcCccccc---HHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccccc
Q 000265 796 HHFCTLVGFGADAIC---PYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQ 872 (1760)
Q Consensus 796 Hh~a~L~GyGA~av~---Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~gaq 872 (1760)
++++-.|-.|||+|. |+|- .+... ..+.+.||.+.+...|..+|..+|+++++..++..
T Consensus 274 ~dv~k~l~~GAd~v~ig~~~l~-----~~~~~-------------g~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~ 335 (352)
T PRK05437 274 LDIAKALALGADAVGMAGPFLK-----AALEG-------------GEEAVIELIEQWIEELKIAMFLTGAKNIAELRKVP 335 (352)
T ss_pred HHHHHHHHcCCCEEEEhHHHHH-----HHHhc-------------cHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCCC
Confidence 999999999999994 3332 22222 24678899999999999999999999999987776
Q ss_pred h
Q 000265 873 I 873 (1760)
Q Consensus 873 i 873 (1760)
+
T Consensus 336 ~ 336 (352)
T PRK05437 336 L 336 (352)
T ss_pred E
Confidence 4
No 244
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=92.78 E-value=0.82 Score=58.49 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCC
Q 000265 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGA 1247 (1760)
..+..+.++|+|+|+++...|.. . -+...+.++.+.+ .+++|++ |++.|..++..++.+||
T Consensus 231 e~a~~L~~agvdvivvD~a~g~~----------~--~vl~~i~~i~~~~------p~~~vi~-g~v~t~e~a~~l~~aGa 291 (486)
T PRK05567 231 ERAEALVEAGVDVLVVDTAHGHS----------E--GVLDRVREIKAKY------PDVQIIA-GNVATAEAARALIEAGA 291 (486)
T ss_pred HHHHHHHHhCCCEEEEECCCCcc----------h--hHHHHHHHHHhhC------CCCCEEE-eccCCHHHHHHHHHcCC
Confidence 45677899999999998754321 0 1223344443321 2477777 99999999999999999
Q ss_pred Cccccch
Q 000265 1248 EEFGFST 1254 (1760)
Q Consensus 1248 daVg~GT 1254 (1760)
|+|.+|-
T Consensus 292 d~i~vg~ 298 (486)
T PRK05567 292 DAVKVGI 298 (486)
T ss_pred CEEEECC
Confidence 9997653
No 245
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.71 E-value=0.62 Score=55.57 Aligned_cols=87 Identities=17% Similarity=0.216 Sum_probs=62.5
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000265 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
..-+..+|+..|..+|.|=. .--.-+..++++|||+|.++.. + ...+.++.+.+
T Consensus 177 ~~av~~~r~~~~~~~I~VEv----~tleea~eA~~~gaD~I~LD~~---------------~---~e~l~~~v~~~---- 230 (277)
T PRK05742 177 AQAVAAAHRIAPGKPVEVEV----ESLDELRQALAAGADIVMLDEL---------------S---LDDMREAVRLT---- 230 (277)
T ss_pred HHHHHHHHHhCCCCeEEEEe----CCHHHHHHHHHcCCCEEEECCC---------------C---HHHHHHHHHHh----
Confidence 34467777776666665553 2234456688999999988532 1 23456665543
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.+++|.++||| |...+...+..|+|.+.+|..
T Consensus 231 -~~~i~leAsGGI-t~~ni~~~a~tGvD~Isvg~l 263 (277)
T PRK05742 231 -AGRAKLEASGGI-NESTLRVIAETGVDYISIGAM 263 (277)
T ss_pred -CCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChh
Confidence 247999999999 799999999999999999974
No 246
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=92.70 E-value=0.55 Score=54.00 Aligned_cols=65 Identities=17% Similarity=0.014 Sum_probs=46.9
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCc--CCHHH----HHHHH
Q 000265 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQL--KTGRD----VAIAA 1243 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGI--rtG~D----VaKAl 1243 (1760)
+..+.++|||+|-+... + + ...+.++.+. ..+||++.||+ .|..| +..++
T Consensus 149 ~~~a~~~GaD~Ik~~~~-~-------------~---~~~~~~i~~~-------~~~pvv~~GG~~~~~~~~~l~~~~~~~ 204 (235)
T cd00958 149 ARIGAELGADIVKTKYT-G-------------D---AESFKEVVEG-------CPVPVVIAGGPKKDSEEEFLKMVYDAM 204 (235)
T ss_pred HHHHHHHCCCEEEecCC-C-------------C---HHHHHHHHhc-------CCCCEEEeCCCCCCCHHHHHHHHHHHH
Confidence 45588999999988421 1 1 2344555443 14788998987 67766 88889
Q ss_pred HcCCCccccchhHHH
Q 000265 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
.+||++|.+|+.++-
T Consensus 205 ~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 205 EAGAAGVAVGRNIFQ 219 (235)
T ss_pred HcCCcEEEechhhhc
Confidence 999999999998774
No 247
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=92.68 E-value=1.5 Score=56.08 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000265 1166 VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
+...+..+.++|+|.|+||...|.. ...+..+..+++.. .+++||+ |-+.|..++..++.+
T Consensus 226 ~~~ra~~Lv~aGVd~i~~D~a~g~~------------~~~~~~i~~i~~~~------~~~~vi~-g~~~t~~~~~~l~~~ 286 (475)
T TIGR01303 226 VGGKAKALLDAGVDVLVIDTAHGHQ------------VKMISAIKAVRALD------LGVPIVA-GNVVSAEGVRDLLEA 286 (475)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCc------------HHHHHHHHHHHHHC------CCCeEEE-eccCCHHHHHHHHHh
Confidence 3345677889999999999876431 11233344444331 2588888 779999999999999
Q ss_pred CCCccccch
Q 000265 1246 GAEEFGFST 1254 (1760)
Q Consensus 1246 GAdaVg~GT 1254 (1760)
|||.|-+|-
T Consensus 287 G~d~i~vg~ 295 (475)
T TIGR01303 287 GANIIKVGV 295 (475)
T ss_pred CCCEEEECC
Confidence 999876663
No 248
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=92.67 E-value=2.5 Score=50.13 Aligned_cols=112 Identities=16% Similarity=0.160 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcc----ccCHHHHHHHHHHcCCCEEEEe---------------------------
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVS----EAGVGVIASGVVKGHADHVLIS--------------------------- 1184 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~----~~Gvg~iA~~aakaGAD~IvIs--------------------------- 1184 (1760)
++++..+++..+|+.+++.|+++=.-. ..|+......+.++|+|+++|-
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaP 156 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAP 156 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCC
Confidence 456777778888877777777664422 2366666666777777777651
Q ss_pred ---------------c------CCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000265 1185 ---------------G------HDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1185 ---------------G------~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
| ..|-||.. .+....+.+..+.+++. .++||.+-=||++..++.++.
T Consensus 157 tt~~~rl~~i~~~a~GFiY~vs~~GvTG~~---------~~~~~~~~~~v~~vr~~---~~~Pv~vGFGIs~~e~~~~v~ 224 (265)
T COG0159 157 TTPDERLKKIAEAASGFIYYVSRMGVTGAR---------NPVSADVKELVKRVRKY---TDVPVLVGFGISSPEQAAQVA 224 (265)
T ss_pred CCCHHHHHHHHHhCCCcEEEEecccccCCC---------cccchhHHHHHHHHHHh---cCCCeEEecCcCCHHHHHHHH
Confidence 1 12333332 12111244444444432 269999999999999999999
Q ss_pred HcCCCccccchhHHHHh
Q 000265 1244 LLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~Al 1260 (1760)
.. ||+|-+||++.-.+
T Consensus 225 ~~-ADGVIVGSAiV~~i 240 (265)
T COG0159 225 EA-ADGVIVGSAIVKII 240 (265)
T ss_pred Hh-CCeEEEcHHHHHHH
Confidence 99 99999999988654
No 249
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=92.58 E-value=0.69 Score=55.31 Aligned_cols=94 Identities=17% Similarity=0.125 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
++.+.+.|..+|+..|..+|.|-. ..-.-|..++++|||+|.+|+.. ..-+.++.+.+
T Consensus 173 ~~~i~~av~~~r~~~~~~kIeVEv----~tleqa~ea~~agaDiI~LDn~~------------------~e~l~~av~~~ 230 (284)
T PRK06096 173 PQDWSGAINQLRRHAPEKKIVVEA----DTPKEAIAALRAQPDVLQLDKFS------------------PQQATEIAQIA 230 (284)
T ss_pred cccHHHHHHHHHHhCCCCCEEEEC----CCHHHHHHHHHcCCCEEEECCCC------------------HHHHHHHHHHh
Confidence 346788899999887776666653 33455677999999999997751 23456666655
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
... +.++.|-++||| |...+......|+|.+.+|..
T Consensus 231 ~~~--~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 231 PSL--APHCTLSLAGGI-NLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred hcc--CCCeEEEEECCC-CHHHHHHHHhcCCCEEEECcc
Confidence 432 357899999999 788999999999999977753
No 250
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=92.48 E-value=2.5 Score=52.59 Aligned_cols=139 Identities=18% Similarity=0.227 Sum_probs=97.7
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000265 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|-|+++++++|++.-.-.+-.+.+ .. .+.|..+++.|+..|++|-.+-..-...+|++.++
T Consensus 229 ~~~ltW~di~~lr~~~~~pvivKgV---~s---------------~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L 290 (381)
T PRK11197 229 DPSISWKDLEWIRDFWDGPMVIKGI---LD---------------PEDARDAVRFGADGIVVSNHGGRQLDGVLSSARAL 290 (381)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEec---CC---------------HHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHH
Confidence 5889999999999853211222222 11 16788889999999999975432222345555555
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000265 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
..+...+ ..++-|++ +|-+|.--|++-.|.+||++| .|+|- .|.. ..++.+.+
T Consensus 291 ~~i~~a~-----~~~~~vi~-dGGIr~g~Di~KALaLGA~~V~iGr~~l~-----~la~-------------~G~~gv~~ 346 (381)
T PRK11197 291 PAIADAV-----KGDITILA-DSGIRNGLDVVRMIALGADTVLLGRAFVY-----ALAA-------------AGQAGVAN 346 (381)
T ss_pred HHHHHHh-----cCCCeEEe-eCCcCcHHHHHHHHHcCcCceeEhHHHHH-----HHHh-------------ccHHHHHH
Confidence 5554432 13466777 688999999999999999999 45543 1111 24678889
Q ss_pred HHHHHHHHHHHHHHhhchhhhhcc
Q 000265 845 YFKASNYGMMKVLAKMGISTLASY 868 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~SY 868 (1760)
++.-+..-|-..|.-+|+.++..-
T Consensus 347 ~l~~l~~El~~~m~l~G~~~i~el 370 (381)
T PRK11197 347 LLDLIEKEMRVAMTLTGAKSISEI 370 (381)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHh
Confidence 999999999999999999999884
No 251
>PLN02535 glycolate oxidase
Probab=92.31 E-value=2.1 Score=52.98 Aligned_cols=143 Identities=14% Similarity=0.194 Sum_probs=99.4
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000265 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|-++++++++|+..-.-.+-.+-+ .. -++|..|++.|+..|++|..+...-...+|++-++
T Consensus 207 ~~~~tW~~i~~lr~~~~~PvivKgV---~~---------------~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L 268 (364)
T PLN02535 207 DASLSWKDIEWLRSITNLPILIKGV---LT---------------REDAIKAVEVGVAGIIVSNHGARQLDYSPATISVL 268 (364)
T ss_pred CCCCCHHHHHHHHhccCCCEEEecC---CC---------------HHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHH
Confidence 5778999999999842111111111 10 14588889999999999987543333456666666
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000265 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
-.+...+ ..++-||+ +|-+|.--|++-.|-+||++| .|+|-- +. ...++.+++
T Consensus 269 ~ev~~av-----~~~ipVi~-dGGIr~g~Dv~KALalGA~aV~vGr~~l~~-----l~-------------~~g~~gv~~ 324 (364)
T PLN02535 269 EEVVQAV-----GGRVPVLL-DGGVRRGTDVFKALALGAQAVLVGRPVIYG-----LA-------------AKGEDGVRK 324 (364)
T ss_pred HHHHHHH-----hcCCCEEe-eCCCCCHHHHHHHHHcCCCEEEECHHHHhh-----hh-------------hccHHHHHH
Confidence 6665443 22466777 688999999999999999999 466541 11 123566777
Q ss_pred HHHHHHHHHHHHHHhhchhhhhcccccc
Q 000265 845 YFKASNYGMMKVLAKMGISTLASYKGAQ 872 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~SY~gaq 872 (1760)
+++-+...|...|.-+|+.++..-++.-
T Consensus 325 ~l~~l~~el~~~m~l~G~~~i~el~~~~ 352 (364)
T PLN02535 325 VIEMLKDELEITMALSGCPSVKDITRSH 352 (364)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHhhhhh
Confidence 7878889999999999999999865543
No 252
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=92.24 E-value=0.38 Score=52.68 Aligned_cols=75 Identities=17% Similarity=-0.063 Sum_probs=49.3
Q ss_pred HHHHHHHcCCCEEEEecC-CCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCC
Q 000265 1169 IASGVVKGHADHVLISGH-DGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1169 iA~~aakaGAD~IvIsG~-~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGA 1247 (1760)
.+..+.+.|+|+|.++.. .+.++.. . +.......+.++.+. .+++|+++||| +..++..++.+||
T Consensus 107 ~~~~~~~~g~d~i~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~-------~~~pv~a~GGi-~~~~i~~~~~~Ga 172 (196)
T cd00564 107 EALRAEELGADYVGFGPVFPTPTKPG----A--GPPLGLELLREIAEL-------VEIPVVAIGGI-TPENAAEVLAAGA 172 (196)
T ss_pred HHHHHhhcCCCEEEECCccCCCCCCC----C--CCCCCHHHHHHHHHh-------CCCCEEEECCC-CHHHHHHHHHcCC
Confidence 445678889999998643 2222111 0 001112334444332 25899999999 5799999999999
Q ss_pred CccccchhHH
Q 000265 1248 EEFGFSTAPL 1257 (1760)
Q Consensus 1248 daVg~GTa~L 1257 (1760)
++|.+|++++
T Consensus 173 ~~i~~g~~i~ 182 (196)
T cd00564 173 DGVAVISAIT 182 (196)
T ss_pred CEEEEehHhh
Confidence 9999999865
No 253
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=92.23 E-value=0.83 Score=54.49 Aligned_cols=93 Identities=20% Similarity=0.178 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+.+.+.|..+|+..|..+|.|-. ..-.-|..++++|||+|.+++.. ..-+.++.+.++
T Consensus 173 ~~i~~av~~~r~~~~~~kIeVEv----~tleea~ea~~~GaDiI~lDn~~------------------~e~l~~~v~~l~ 230 (277)
T TIGR01334 173 FDWGGAIGRLKQTAPERKITVEA----DTIEQALTVLQASPDILQLDKFT------------------PQQLHHLHERLK 230 (277)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEC----CCHHHHHHHHHcCcCEEEECCCC------------------HHHHHHHHHHHh
Confidence 46888999999987777776654 33455677899999999999641 234556666654
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
. .+.++.|.++||| |...+......|+|.+.+|..
T Consensus 231 ~--~~~~~~leasGGI-~~~ni~~ya~~GvD~is~gal 265 (277)
T TIGR01334 231 F--FDHIPTLAAAGGI-NPENIADYIEAGIDLFITSAP 265 (277)
T ss_pred c--cCCCEEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 2 2357899999999 789999999999999988864
No 254
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=92.21 E-value=1.4 Score=55.84 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCC
Q 000265 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGA 1247 (1760)
.-+..+.++|+|+|.|+-..|.+ . -+...+.++.+.. .+++|++ |.+.|..++..++.+||
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~g~~--------~----~~~~~i~~i~~~~------~~~~vi~-G~v~t~~~a~~l~~aGa 287 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSHGHS--------I----YVIDSIKEIKKTY------PDLDIIA-GNVATAEQAKALIDAGA 287 (450)
T ss_pred HHHHHHHHhCCCEEEEECCCCcH--------h----HHHHHHHHHHHhC------CCCCEEE-EeCCCHHHHHHHHHhCC
Confidence 45667899999999998865422 0 1233344443321 2577777 99999999999999999
Q ss_pred Cccccc
Q 000265 1248 EEFGFS 1253 (1760)
Q Consensus 1248 daVg~G 1253 (1760)
|+|.+|
T Consensus 288 d~i~vg 293 (450)
T TIGR01302 288 DGLRVG 293 (450)
T ss_pred CEEEEC
Confidence 998765
No 255
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=92.12 E-value=0.9 Score=54.59 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
++.+.|..+|+..|..+|.|-. ..-.-|..++++|||+|.+|+.. | .-+.++.+.+
T Consensus 194 ~i~~av~~~r~~~~~~kIeVEv----~sleea~ea~~~gaDiI~LDn~s----------------~--e~~~~av~~~-- 249 (296)
T PRK09016 194 SIRQAVEKAFWLHPDVPVEVEV----ENLDELDQALKAGADIIMLDNFT----------------T--EQMREAVKRT-- 249 (296)
T ss_pred cHHHHHHHHHHhCCCCCEEEEe----CCHHHHHHHHHcCCCEEEeCCCC----------------h--HHHHHHHHhh--
Confidence 3667888898887777776654 33455677999999999999862 1 3445555542
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.++.|.++||| |...|......|+|.+.+|..
T Consensus 250 ---~~~~~ieaSGGI-~~~ni~~yA~tGVD~Is~gal 282 (296)
T PRK09016 250 ---NGRALLEVSGNV-TLETLREFAETGVDFISVGAL 282 (296)
T ss_pred ---cCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 457999999999 678899999999999998874
No 256
>PLN02334 ribulose-phosphate 3-epimerase
Probab=92.11 E-value=1.5 Score=50.60 Aligned_cols=102 Identities=24% Similarity=0.233 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcC-CCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000265 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGH-ADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaG-AD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
....+..++.. +..+.+=+.+..-. ..+....+.| +|.|.+-....|++. ..+. | .++..+.+. ++
T Consensus 104 ~~~~~~~i~~~--g~~iGls~~~~t~~-~~~~~~~~~~~~Dyi~~~~v~pg~~~------~~~~-~--~~~~~i~~~-~~ 170 (229)
T PLN02334 104 LHRLIQQIKSA--GMKAGVVLNPGTPV-EAVEPVVEKGLVDMVLVMSVEPGFGG------QSFI-P--SMMDKVRAL-RK 170 (229)
T ss_pred HHHHHHHHHHC--CCeEEEEECCCCCH-HHHHHHHhccCCCEEEEEEEecCCCc------cccC-H--HHHHHHHHH-HH
Confidence 44566667664 45555554322222 2233344443 999977433222211 1111 1 233333332 22
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
+...++|.++||| |...+...+..||+.|.+|++.+
T Consensus 171 --~~~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~ 206 (229)
T PLN02334 171 --KYPELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVF 206 (229)
T ss_pred --hCCCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHh
Confidence 1234789999999 79999999999999999999744
No 257
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=92.03 E-value=3.5 Score=51.04 Aligned_cols=225 Identities=16% Similarity=0.134 Sum_probs=129.1
Q ss_pred CCHHHHHHhHHHHHhcccccccccCCCCCccccccCccchhHHHhh----hcccccCCCCCcccccceeeeeeeecCCCC
Q 000265 597 YTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQ----MFAQVTNPPIDPIREKIVTSMECMIGPEGV 672 (1760)
Q Consensus 597 yt~E~~~~~l~pma~~g~E~igSMG~D~plA~ls~~~~~l~~yFkQ----~FAQVTNPPID~iRE~~vmSl~~~~G~~~n 672 (1760)
...+.+..+|.-.-+.|..++. -|.=.++++.+++.+-+-|.. ..+++.+...+|---.--+.-....++..+
T Consensus 120 ~d~~~~~~~i~rAe~aG~~Al~---vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 196 (356)
T PF01070_consen 120 RDRELTRDLIRRAEAAGAKALV---VTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDN 196 (356)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEE---EETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTS
T ss_pred cCHHHHHHHHHHhhcCCCCEEE---EECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCc
Confidence 3555555566665555655554 333344566777666666632 234455555555400000000001111111
Q ss_pred CCCCCcCccceE-EecCCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcC
Q 000265 673 LTETTEEQCHRL-SLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSD 751 (1760)
Q Consensus 673 ~l~~~~~~~~~l-~l~sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsD 751 (1760)
. .....-. ....|-++++++++|++.-.-.+-.+-+ .. -+.|..+++.|+..|++|-
T Consensus 197 ~----~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv---~~---------------~~da~~~~~~G~~~i~vs~ 254 (356)
T PF01070_consen 197 G----AAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGV---LS---------------PEDAKRAVDAGVDGIDVSN 254 (356)
T ss_dssp T----CHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE----S---------------HHHHHHHHHTT-SEEEEES
T ss_pred c----hhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEec---cc---------------HHHHHHHHhcCCCEEEecC
Confidence 0 0000000 1125779999999998842211222222 22 1678889999999999998
Q ss_pred CCCCCCCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCC
Q 000265 752 RAFSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIP 828 (1760)
Q Consensus 752 r~~~~~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~ 828 (1760)
.+-..---.+|++-++-.+.+.+ ..++-|++ +|-+|.--|++-.|.+||++| .|+|-- |..
T Consensus 255 hGGr~~d~~~~~~~~L~~i~~~~-----~~~~~i~~-dgGir~g~Dv~kalaLGA~~v~igr~~l~~-----l~~----- 318 (356)
T PF01070_consen 255 HGGRQLDWGPPTIDALPEIRAAV-----GDDIPIIA-DGGIRRGLDVAKALALGADAVGIGRPFLYA-----LAA----- 318 (356)
T ss_dssp GTGTSSTTS-BHHHHHHHHHHHH-----TTSSEEEE-ESS--SHHHHHHHHHTT-SEEEESHHHHHH-----HHH-----
T ss_pred CCcccCccccccccccHHHHhhh-----cCCeeEEE-eCCCCCHHHHHHHHHcCCCeEEEccHHHHH-----HHH-----
Confidence 75444445577777777776654 26777888 688999999999999999999 566532 111
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccc
Q 000265 829 PKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKG 870 (1760)
Q Consensus 829 ~~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~g 870 (1760)
..++.+.++++-+...|...|.-+|+++|..-+.
T Consensus 319 --------~g~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~ 352 (356)
T PF01070_consen 319 --------GGEEGVERVLEILKEELKRAMFLLGARSIAELRR 352 (356)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTG
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCH
Confidence 2457788999999999999999999999988543
No 258
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=91.94 E-value=0.51 Score=54.41 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1206 ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1206 ~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
...+.++.+. ..+||+++|||++..|+.++..+||++|-+|+++.
T Consensus 173 ~eli~~i~~~-------~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~ 217 (221)
T TIGR00734 173 LELLTKTLEL-------SEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVH 217 (221)
T ss_pred HHHHHHHHhh-------CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhh
Confidence 4455555554 25899999999999999999999999999999864
No 259
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=91.88 E-value=2.6 Score=49.97 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEcc----ccCHHHHHHHHHHcCCCEEEEe----------------------------
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVS----EAGVGVIASGVVKGHADHVLIS---------------------------- 1184 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~----~~Gvg~iA~~aakaGAD~IvIs---------------------------- 1184 (1760)
.+++.+++.++|..+++.||++=.-- .-|+......+.++|+|+++|=
T Consensus 71 ~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~ 150 (259)
T PF00290_consen 71 LEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPT 150 (259)
T ss_dssp HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETT
T ss_pred HHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCC
Confidence 56666777777755567777654422 1355566666777777777651
Q ss_pred --------------------cCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1185 --------------------GHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1185 --------------------G~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
...|-||... .....+.+..+.+++.. ++||.+-=||+|+.++.+..
T Consensus 151 t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~---------~~~~~l~~~i~~ik~~~---~~Pv~vGFGI~~~e~~~~~~- 217 (259)
T PF00290_consen 151 TPEERIKKIAKQASGFIYLVSRMGVTGSRT---------ELPDELKEFIKRIKKHT---DLPVAVGFGISTPEQAKKLA- 217 (259)
T ss_dssp S-HHHHHHHHHH-SSEEEEESSSSSSSTTS---------SCHHHHHHHHHHHHHTT---SS-EEEESSS-SHHHHHHHH-
T ss_pred CCHHHHHHHHHhCCcEEEeeccCCCCCCcc---------cchHHHHHHHHHHHhhc---CcceEEecCCCCHHHHHHHH-
Confidence 1233333211 11234555555555532 69999999999999999988
Q ss_pred cCCCccccchhHHHHh
Q 000265 1245 LGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~Al 1260 (1760)
.|||+|-+|++++-.+
T Consensus 218 ~~aDGvIVGSa~v~~i 233 (259)
T PF00290_consen 218 AGADGVIVGSAFVKII 233 (259)
T ss_dssp TTSSEEEESHHHHHHH
T ss_pred ccCCEEEECHHHHHHH
Confidence 9999999999998754
No 260
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=91.84 E-value=0.35 Score=55.68 Aligned_cols=77 Identities=25% Similarity=0.202 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000265 1166 VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
-..+|+.+.++|+.+|-==|..=|+|- |+-....|..+.+. -+||||+|-||-++.|++.|+.|
T Consensus 140 D~v~arrLee~GcaavMPl~aPIGSg~---------G~~n~~~l~iiie~-------a~VPviVDAGiG~pSdAa~aMEl 203 (262)
T COG2022 140 DPVLARRLEEAGCAAVMPLGAPIGSGL---------GLQNPYNLEIIIEE-------ADVPVIVDAGIGTPSDAAQAMEL 203 (262)
T ss_pred CHHHHHHHHhcCceEeccccccccCCc---------CcCCHHHHHHHHHh-------CCCCEEEeCCCCChhHHHHHHhc
Confidence 346789999999999864443333322 33333445444433 27999999999999999999999
Q ss_pred CCCccccchhHHH
Q 000265 1246 GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1246 GAdaVg~GTa~L~ 1258 (1760)
|+|+|-+-|+.-.
T Consensus 204 G~DaVL~NTAiA~ 216 (262)
T COG2022 204 GADAVLLNTAIAR 216 (262)
T ss_pred ccceeehhhHhhc
Confidence 9999999997443
No 261
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=91.81 E-value=1 Score=53.49 Aligned_cols=88 Identities=19% Similarity=0.259 Sum_probs=61.9
Q ss_pred HHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000265 1142 QLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1142 qlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
..+..+|+..| ..+|.|-. .--.-+..+.++|||+|.++... | ..+.++.+.++..
T Consensus 169 ~~v~~~r~~~~~~~~I~vev----~t~eea~~A~~~gaD~I~ld~~~----------------~--e~l~~~v~~i~~~- 225 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEV----ETLEEAEEALEAGADIIMLDNMS----------------P--EELKEAVKLLKGL- 225 (269)
T ss_pred HHHHHHHHhCCCCCeEEEec----CCHHHHHHHHHcCCCEEEECCCC----------------H--HHHHHHHHHhccC-
Confidence 55788888776 45555543 11234566789999999996531 1 3455555554332
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
.+++|.++||| |...+...+..|||.+.+|..
T Consensus 226 --~~i~i~asGGI-t~~ni~~~a~~Gad~Isvgal 257 (269)
T cd01568 226 --PRVLLEASGGI-TLENIRAYAETGVDVISTGAL 257 (269)
T ss_pred --CCeEEEEECCC-CHHHHHHHHHcCCCEEEEcHH
Confidence 37999999999 588899999999999998753
No 262
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.67 E-value=0.59 Score=54.31 Aligned_cols=72 Identities=8% Similarity=-0.034 Sum_probs=52.0
Q ss_pred HHHHHHHH-cCCCEEEE---ecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000265 1168 VIASGVVK-GHADHVLI---SGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1168 ~iA~~aak-aGAD~IvI---sG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
..|....+ .|||-+.| ++...|.. .-...+.++.+.. .+||+++|||||-.|+-+.+
T Consensus 35 ~~a~~~~~~~Ga~~l~ivDLd~a~~~~~------------~n~~~I~~i~~~~-------~~pi~vGGGIrs~e~v~~~l 95 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIVDLIGAKAQHA------------REFDYIKSLRRLT-------TKDIEVGGGIRTKSQIMDYF 95 (234)
T ss_pred HHHHHHHhccCCCEEEEEECcccccCCc------------chHHHHHHHHhhc-------CCeEEEcCCcCCHHHHHHHH
Confidence 46666666 68998765 45432211 1233455555431 48999999999999999999
Q ss_pred HcCCCccccchhHHH
Q 000265 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
.+||+.|-+||.++-
T Consensus 96 ~~Ga~kvvigt~a~~ 110 (234)
T PRK13587 96 AAGINYCIVGTKGIQ 110 (234)
T ss_pred HCCCCEEEECchHhc
Confidence 999999999997653
No 263
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=91.38 E-value=1.3 Score=52.68 Aligned_cols=90 Identities=21% Similarity=0.226 Sum_probs=61.7
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000265 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
.+.+..+|+..|..+|.|=. ... .-+..++++|||+|.++... | ..+.++.+.++..
T Consensus 171 ~~av~~~R~~~~~~~IgVev---~t~-eea~~A~~~gaD~I~ld~~~----------------p--~~l~~~~~~~~~~- 227 (272)
T cd01573 171 LKALARLRATAPEKKIVVEV---DSL-EEALAAAEAGADILQLDKFS----------------P--EELAELVPKLRSL- 227 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEc---CCH-HHHHHHHHcCCCEEEECCCC----------------H--HHHHHHHHHHhcc-
Confidence 56788888877666554432 222 34455789999999997531 1 1334555544321
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
..+++++++||| |...+...+..|||.|.+|..
T Consensus 228 -~~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsai 260 (272)
T cd01573 228 -APPVLLAAAGGI-NIENAAAYAAAGADILVTSAP 260 (272)
T ss_pred -CCCceEEEECCC-CHHHHHHHHHcCCcEEEEChh
Confidence 135999999999 899999999999999966553
No 264
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=91.34 E-value=0.97 Score=52.26 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccc-cC---------HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSE-AG---------VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE 1206 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~-~G---------vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~ 1206 (1760)
.+++.++++..+.. ..|+++-.... .. |...+..++++|||+|..+=. +..+ .+.
T Consensus 111 ~~~i~~v~~~~~~~--gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg-~~~~------------~t~ 175 (236)
T PF01791_consen 111 IEEIAAVVEECHKY--GLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG-KPVG------------ATP 175 (236)
T ss_dssp HHHHHHHHHHHHTS--EEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S-SSSC------------SHH
T ss_pred HHHHHHHHHHHhcC--CcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC-cccc------------ccH
Confidence 35556666555532 55666653221 11 234455688999999988543 1111 233
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCc------CCHHHHHHHHHcCCC--ccccchh
Q 000265 1207 LGLAETHQTLVANDLRGRTILQTDGQL------KTGRDVAIAALLGAE--EFGFSTA 1255 (1760)
Q Consensus 1207 ~~Laev~q~L~~~glr~rV~LiadGGI------rtG~DVaKAlaLGAd--aVg~GTa 1255 (1760)
..+....+......+..++-|.++||+ ++-.++..++.+||+ ++.+|+.
T Consensus 176 ~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~ 232 (236)
T PF01791_consen 176 EDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRN 232 (236)
T ss_dssp HHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHH
T ss_pred HHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 334444444433323345669999999 999999999999995 5555543
No 265
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=91.17 E-value=1.3 Score=52.68 Aligned_cols=88 Identities=19% Similarity=0.272 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000265 1140 LAQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
+..-+.++|+..| ..+|.|=. ..-.-+..+.++|||+|.++... ...+.++.+.+
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev----~t~eea~~A~~~gaDyI~ld~~~------------------~e~lk~~v~~~-- 219 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEV----ESLEEAEEAAEAGADIIMLDNMK------------------PEEIKEAVQLL-- 219 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEe----CCHHHHHHHHHcCCCEEEECCCC------------------HHHHHHHHHHh--
Confidence 4556788888765 45555443 12244667889999999995531 13456666553
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.++||.++||| |...+...+..|||.+.+|..
T Consensus 220 ---~~~ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgai 252 (265)
T TIGR00078 220 ---KGRVLLEASGGI-TLDNLEEYAETGVDVISSGAL 252 (265)
T ss_pred ---cCCCcEEEECCC-CHHHHHHHHHcCCCEEEeCHH
Confidence 235899999999 799999999999999999653
No 266
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.07 E-value=1.5 Score=52.38 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=70.3
Q ss_pred CCCCC--CHHHHHHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHH
Q 000265 1131 HHDIY--SIEDLAQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWEL 1207 (1760)
Q Consensus 1131 hhDiy--SiedLaqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~ 1207 (1760)
|-.++ +.+.+.+.|..+|+..| ..+|.|-. .--.-+..++++|||+|.+|+.. ..
T Consensus 168 Hi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv----~slee~~ea~~~gaDiImLDn~s------------------~e 225 (281)
T PRK06543 168 HLAALAAQGLDLTEALRHVRAQLGHTTHVEVEV----DRLDQIEPVLAAGVDTIMLDNFS------------------LD 225 (281)
T ss_pred HHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEe----CCHHHHHHHHhcCCCEEEECCCC------------------HH
Confidence 44443 33467888999998876 35565553 33345667889999999999872 13
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
-+.++...+ +.++.|.++||| |...+...+..|+|.+.+|..
T Consensus 226 ~l~~av~~~-----~~~~~leaSGgI-~~~ni~~yA~tGVD~Is~gal 267 (281)
T PRK06543 226 DLREGVELV-----DGRAIVEASGNV-NLNTVGAIASTGVDVISVGAL 267 (281)
T ss_pred HHHHHHHHh-----CCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 455555543 456789999999 788899999999999998874
No 267
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=91.04 E-value=1.4 Score=52.47 Aligned_cols=87 Identities=18% Similarity=0.298 Sum_probs=62.6
Q ss_pred HHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhC
Q 000265 1141 AQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAN 1219 (1760)
Q Consensus 1141 aqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~ 1219 (1760)
..-+..+|+..| ..+|.|=. ... .-+..+.++|||+|.++... ...|.++.+.+
T Consensus 169 ~~~v~~~r~~~~~~~~Igvev---~s~-eea~~A~~~gaDyI~ld~~~------------------~e~l~~~~~~~--- 223 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVEV---ETL-EQLKEALEAGADIIMLDNMS------------------PEELREAVALL--- 223 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEEE---CCH-HHHHHHHHcCCCEEEECCcC------------------HHHHHHHHHHc---
Confidence 345777887765 44554443 223 44566889999999996531 24566666543
Q ss_pred CCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1220 DLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1220 glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.++|+.++||| |...+...+..|+|.+.+|+.
T Consensus 224 --~~~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~sl 256 (268)
T cd01572 224 --KGRVLLEASGGI-TLENIRAYAETGVDYISVGAL 256 (268)
T ss_pred --CCCCcEEEECCC-CHHHHHHHHHcCCCEEEEEee
Confidence 236999999999 799999999999999999885
No 268
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=90.76 E-value=2.8 Score=46.91 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCC-CCCCCCccccccccCCCH--HHHHHHHHHHH
Q 000265 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHD-GGTGASRWTGIKNAGLPW--ELGLAETHQTL 1216 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~-GGTGas~~~si~~~GlP~--~~~Laev~q~L 1216 (1760)
..+.+..++.. +..+++=+.+...... .... ..++|.|.+.+.. |+||. . .++ ...+.++.+..
T Consensus 94 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~-~~~~-~~~~d~i~~~~~~~g~tg~-~--------~~~~~~~~i~~~~~~~ 160 (211)
T cd00429 94 LHRTIQLIKEL--GMKAGVALNPGTPVEV-LEPY-LDEVDLVLVMSVNPGFGGQ-K--------FIPEVLEKIRKLRELI 160 (211)
T ss_pred HHHHHHHHHHC--CCeEEEEecCCCCHHH-HHHH-HhhCCEEEEEEECCCCCCc-c--------cCHHHHHHHHHHHHHH
Confidence 34556666654 4444443322222222 2222 3348999887653 44442 1 122 12233333332
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
.++ ..++|++++|||.. .++..++..|||.|-+|++++-
T Consensus 161 ~~~--~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 161 PEN--NLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred Hhc--CCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 211 12489999999996 9999999999999999998763
No 269
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.56 E-value=1.6 Score=52.39 Aligned_cols=89 Identities=11% Similarity=0.146 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1139 DLAQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
.+.+.|..+|+..| ..+|.|-. .--.-+..++++|||+|.+|+.+ ..-+.++.+.+
T Consensus 182 ~i~~av~~~r~~~~~~~kIeVEv----~tleea~~a~~agaDiImLDnms------------------pe~l~~av~~~- 238 (290)
T PRK06559 182 SVQKAIAQARAYAPFVKMVEVEV----ESLAAAEEAAAAGADIIMLDNMS------------------LEQIEQAITLI- 238 (290)
T ss_pred cHHHHHHHHHHhCCCCCeEEEEC----CCHHHHHHHHHcCCCEEEECCCC------------------HHHHHHHHHHh-
Confidence 46677888888765 45555543 33355677999999999999872 13456666543
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.++.+.++||| |...+...+..|+|.+.+|..
T Consensus 239 ----~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~gal 271 (290)
T PRK06559 239 ----AGRSRIECSGNI-DMTTISRFRGLAIDYVSSGSL 271 (290)
T ss_pred ----cCceEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 347999999999 788899999999999998874
No 270
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=90.43 E-value=1.8 Score=51.25 Aligned_cols=65 Identities=18% Similarity=0.050 Sum_probs=45.3
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcC--CHHHHHHH----H
Q 000265 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLK--TGRDVAIA----A 1243 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIr--tG~DVaKA----l 1243 (1760)
+..+.+.|||+|..+ ..| ....+.++.+. .++||.++|||+ |-.++.+. +
T Consensus 166 ~~~a~e~GAD~vKt~-~~~----------------~~~~l~~~~~~-------~~ipV~a~GGi~~~~~~~~l~~v~~~~ 221 (267)
T PRK07226 166 ARVAAELGADIVKTN-YTG----------------DPESFREVVEG-------CPVPVVIAGGPKTDTDREFLEMVRDAM 221 (267)
T ss_pred HHHHHHHCCCEEeeC-CCC----------------CHHHHHHHHHh-------CCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 455778999999775 211 12345554432 258999999999 66666555 5
Q ss_pred HcCCCccccchhHHH
Q 000265 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
.+||+++.+|+..+-
T Consensus 222 ~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 222 EAGAAGVAVGRNVFQ 236 (267)
T ss_pred HcCCcEEehhhhhhc
Confidence 999999988887553
No 271
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=90.25 E-value=1.6 Score=51.28 Aligned_cols=93 Identities=12% Similarity=-0.014 Sum_probs=56.6
Q ss_pred HHHHHHHHhC--CCCceEEEEcc------ccCHHHH---HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHH
Q 000265 1142 QLIYDLKNAN--PGARISVKLVS------EAGVGVI---ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLA 1210 (1760)
Q Consensus 1142 qlI~~Lk~~~--p~~pV~VKlv~------~~Gvg~i---A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~La 1210 (1760)
+.+..+++.. .++|++|.... ......+ +..+.++|||+|-++.. +....+.
T Consensus 123 ~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~-----------------~~~~~l~ 185 (258)
T TIGR01949 123 RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT-----------------GDIDSFR 185 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC-----------------CCHHHHH
Confidence 3445454331 26788775431 1111222 34577899999987521 0133455
Q ss_pred HHHHHHHhCCCCCceEEEEcCCcC--CHHH----HHHHHHcCCCccccchhHHH
Q 000265 1211 ETHQTLVANDLRGRTILQTDGQLK--TGRD----VAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1211 ev~q~L~~~glr~rV~LiadGGIr--tG~D----VaKAlaLGAdaVg~GTa~L~ 1258 (1760)
++.+. .++||.+.|||+ |-.+ +..++..||+++.+|+..+-
T Consensus 186 ~~~~~-------~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 186 DVVKG-------CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred HHHHh-------CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 55443 258999999999 5444 45556999999999987663
No 272
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.24 E-value=1.9 Score=51.60 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1139 DLAQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
++.+.|..+|+..| ..+|.|-. ..-.-+..++++|||+|.+|+.+ ..-+.++.+.+
T Consensus 179 ~i~~ai~~~r~~~~~~~kIeVEv----~tleea~ea~~~gaDiI~LDn~s------------------~e~l~~av~~~- 235 (281)
T PRK06106 179 GVREAIRRARAGVGHLVKIEVEV----DTLDQLEEALELGVDAVLLDNMT------------------PDTLREAVAIV- 235 (281)
T ss_pred cHHHHHHHHHHhCCCCCcEEEEe----CCHHHHHHHHHcCCCEEEeCCCC------------------HHHHHHHHHHh-
Confidence 36677888888776 34555543 33445677899999999999862 13455555543
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.+.++.++||| |...+......|+|.+.+|..
T Consensus 236 ----~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~Gal 268 (281)
T PRK06106 236 ----AGRAITEASGRI-TPETAPAIAASGVDLISVGWL 268 (281)
T ss_pred ----CCCceEEEECCC-CHHHHHHHHhcCCCEEEeChh
Confidence 346789999999 678899999999999999974
No 273
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=90.23 E-value=1 Score=51.88 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
....+|..+.+.|+|.|.+--.++.. .... .....|.++.+. -.+|+++.|||++-.|+..++.
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~--------~~~~-~~~~~i~~i~~~-------~~~~l~v~GGi~~~~~~~~~~~ 96 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAF--------EGER-KNAEAIEKIIEA-------VGVPVQLGGGIRSAEDAASLLD 96 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhh--------cCCc-ccHHHHHHHHHH-------cCCcEEEcCCcCCHHHHHHHHH
Confidence 34467777889999998774443211 0001 112344444433 1589999999999999999999
Q ss_pred cCCCccccchhHH
Q 000265 1245 LGAEEFGFSTAPL 1257 (1760)
Q Consensus 1245 LGAdaVg~GTa~L 1257 (1760)
+||+.|-+|+..+
T Consensus 97 ~Ga~~v~iGs~~~ 109 (241)
T PRK13585 97 LGVDRVILGTAAV 109 (241)
T ss_pred cCCCEEEEChHHh
Confidence 9999999999765
No 274
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=90.17 E-value=5.8 Score=49.30 Aligned_cols=144 Identities=18% Similarity=0.240 Sum_probs=97.1
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000265 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|.++++++++|++... +.++.. |... -+.|..+++.|+.-|++|-.+-..---..+++-++
T Consensus 212 ~~~~~w~~i~~l~~~~~-------~PvivK---Gv~~--------~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L 273 (367)
T TIGR02708 212 KQKLSPRDIEEIAGYSG-------LPVYVK---GPQC--------PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSL 273 (367)
T ss_pred CCCCCHHHHHHHHHhcC-------CCEEEe---CCCC--------HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHH
Confidence 58899999999987421 111111 1111 36678889999999999987522111111223333
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000265 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
..+... ...++-||+ +|.+|.--+++-.+-+||++| .|+|- .|.. ..++.+.+
T Consensus 274 ~ei~~a-----v~~~i~vi~-dGGIr~g~Dv~KaLalGAd~V~igR~~l~-----~la~-------------~G~~gv~~ 329 (367)
T TIGR02708 274 QEVAEA-----VDKRVPIVF-DSGVRRGQHVFKALASGADLVALGRPVIY-----GLAL-------------GGSQGARQ 329 (367)
T ss_pred HHHHHH-----hCCCCcEEe-eCCcCCHHHHHHHHHcCCCEEEEcHHHHH-----HHHh-------------cCHHHHHH
Confidence 333332 344577888 699999999999999999998 56653 2211 23567888
Q ss_pred HHHHHHHHHHHHHHhhchhhhhcccccch
Q 000265 845 YFKASNYGMMKVLAKMGISTLASYKGAQI 873 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~SY~gaqi 873 (1760)
+++-+...|.-.|.-+|.++|..-+...+
T Consensus 330 ~l~~l~~El~~~M~l~G~~~i~eL~~~~l 358 (367)
T TIGR02708 330 VFEYLNKELKRVMQLTGTQTIEDVKGFDL 358 (367)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHhCcccc
Confidence 89999999999999999999998655443
No 275
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=90.07 E-value=3.4 Score=46.29 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecC-CCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGH-DGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~-~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+..+.+..+|... ..+++=+.+...... ......++|.|.+.+. .|+||.. +.......+.++.+.+.
T Consensus 92 ~~~~~~~~~~~~g--~~~~~~~~~~t~~e~--~~~~~~~~d~i~~~~~~~g~tg~~-------~~~~~~~~i~~i~~~~~ 160 (210)
T TIGR01163 92 HIHRLLQLIKDLG--AKAGIVLNPATPLEF--LEYVLPDVDLVLLMSVNPGFGGQK-------FIPDTLEKIREVRKMID 160 (210)
T ss_pred hHHHHHHHHHHcC--CcEEEEECCCCCHHH--HHHHHhhCCEEEEEEEcCCCCccc-------ccHHHHHHHHHHHHHHH
Confidence 4456667777663 333332222222222 2233457999877654 3444421 11112234445544433
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
+ .+..+++.++|||+ ..++..++..|||.+-+|+++.
T Consensus 161 ~--~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 161 E--NGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred h--cCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHh
Confidence 2 12247899999995 6999999999999999999865
No 276
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=90.06 E-value=1.7 Score=49.16 Aligned_cols=67 Identities=27% Similarity=0.349 Sum_probs=47.3
Q ss_pred HHHHcCCCEEEEecCCC----CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC-
Q 000265 1172 GVVKGHADHVLISGHDG----GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG- 1246 (1760)
Q Consensus 1172 ~aakaGAD~IvIsG~~G----GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG- 1246 (1760)
.+.+.++|+|.++...+ |+|.. .+|. .|.++. .++|+++.||| |+..+..++..|
T Consensus 115 ~~~~~~aD~il~dt~~~~~~Gg~g~~---------~~~~-~l~~~~---------~~~PvilaGGI-~~~Nv~~~i~~~~ 174 (203)
T cd00405 115 AAYAGEVDAILLDSKSGGGGGGTGKT---------FDWS-LLRGLA---------SRKPVILAGGL-TPDNVAEAIRLVR 174 (203)
T ss_pred hhccccCCEEEEcCCCCCCCCCCcce---------EChH-Hhhccc---------cCCCEEEECCC-ChHHHHHHHHhcC
Confidence 35567999999976533 22211 1232 233221 25899999999 999999999999
Q ss_pred CCccccchhHHH
Q 000265 1247 AEEFGFSTAPLI 1258 (1760)
Q Consensus 1247 AdaVg~GTa~L~ 1258 (1760)
+++|-+++++..
T Consensus 175 ~~gvdv~S~ie~ 186 (203)
T cd00405 175 PYGVDVSSGVET 186 (203)
T ss_pred CCEEEcCCcccC
Confidence 999999997554
No 277
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=90.05 E-value=1.3 Score=50.63 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
+..+.|+++++.+|+..|.+-.|.+ ...+..+.++||++|+--+. -.++.+++.+
T Consensus 45 ~a~~~i~~l~~~~~~~~vGAGTVl~---~~~a~~a~~aGA~FivsP~~----------------------~~~v~~~~~~ 99 (204)
T TIGR01182 45 VALDAIRLLRKEVPDALIGAGTVLN---PEQLRQAVDAGAQFIVSPGL----------------------TPELAKHAQD 99 (204)
T ss_pred cHHHHHHHHHHHCCCCEEEEEeCCC---HHHHHHHHHcCCCEEECCCC----------------------CHHHHHHHHH
Confidence 4566799999888877776665533 24567799999999943221 1345555555
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCcc
Q 000265 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEF 1250 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaV 1250 (1760)
++ ++.+- |+.|+.++..|+.+||+.|
T Consensus 100 ~~----i~~iP--G~~TptEi~~A~~~Ga~~v 125 (204)
T TIGR01182 100 HG----IPIIP--GVATPSEIMLALELGITAL 125 (204)
T ss_pred cC----CcEEC--CCCCHHHHHHHHHCCCCEE
Confidence 43 55555 9999999999999999965
No 278
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=90.01 E-value=0.68 Score=54.52 Aligned_cols=69 Identities=12% Similarity=-0.052 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000265 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
...|..-.++||+.|.|--- |.|-...+.++.+.. .++|++.||||+ .+|-+.+.+|
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL---------------g~~n~~~i~~i~~~~-------~~~v~vGGGIr~-e~v~~~l~aG 97 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML---------------GPNNDDAAKEALHAY-------PGGLQVGGGIND-TNAQEWLDEG 97 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC---------------CCCcHHHHHHHHHhC-------CCCEEEeCCcCH-HHHHHHHHcC
Confidence 35778888999999866332 223234555655542 489999999998 9999999999
Q ss_pred CCccccchhHHH
Q 000265 1247 AEEFGFSTAPLI 1258 (1760)
Q Consensus 1247 AdaVg~GTa~L~ 1258 (1760)
|+.|.+||.++-
T Consensus 98 a~rVvIGS~av~ 109 (253)
T TIGR02129 98 ASHVIVTSWLFT 109 (253)
T ss_pred CCEEEECcHHHh
Confidence 999999998664
No 279
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=89.84 E-value=2.2 Score=52.54 Aligned_cols=116 Identities=9% Similarity=0.038 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHc-CCCE--EEEecCCCCC--CC-Ccc---ccccccCCCHHHHH
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKG-HADH--VLISGHDGGT--GA-SRW---TGIKNAGLPWELGL 1209 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aaka-GAD~--IvIsG~~GGT--Ga-s~~---~si~~~GlP~~~~L 1209 (1760)
|+.+.+..+++..|..|+++=.--....-.-|..++++ |.|. |-||-.+.-- .- +.. ......|.. ...+
T Consensus 188 ~~~~A~~a~~~~~Pe~~~ivlVD~~~d~~~~al~~a~~~g~~l~gVRlDs~gdl~DK~~~~~~~~~~~~~~~G~~-~~l~ 266 (352)
T PRK07188 188 DVVEACKAYHKTFPEDELIALVDYNNDVITDSLKVAREFGDKLKGVRVDTSKNMIDKYFIRHPEVLGTFDPRGVN-PELI 266 (352)
T ss_pred cHHHHHHHHHHHCCCCCeEEEEecCcccHHHHHHHHHHhCCCccEEEeCCcchHhhhhccccccccccccccccc-HHHH
Confidence 34566777888888877755432111123445556676 9888 8776531100 00 000 000123443 3577
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC--CCccccchhHH
Q 000265 1210 AETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG--AEEFGFSTAPL 1257 (1760)
Q Consensus 1210 aev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG--AdaVg~GTa~L 1257 (1760)
.++++.|.+.|.. +|.|+++||| +...|......| .|.+|+||...
T Consensus 267 ~~vr~~Ld~~g~~-~vkI~aSgGi-ne~~I~~~~~~g~piD~~GVGt~l~ 314 (352)
T PRK07188 267 KALRKALDENGGK-HVKIIVSSGF-DAKKIREFEAQNVPVDIYGVGSSLL 314 (352)
T ss_pred HHHHHHHhhCCCC-CcEEEEeCCC-CHHHHHHHHHcCCCccEEecCcccc
Confidence 8899999888754 6999999999 788888888899 58999999744
No 280
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.72 E-value=1.8 Score=54.11 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=46.5
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCC
Q 000265 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGA 1247 (1760)
..+..++++|+|+|+||...|- +......+.++.+..+ ++ .++.|++.|..++..++.+||
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~------------~~~~~~~v~~ik~~~p------~~-~vi~g~V~T~e~a~~l~~aGa 216 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGH------------STRIIELVKKIKTKYP------NL-DLIAGNIVTKEAALDLISVGA 216 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCC------------ChhHHHHHHHHHhhCC------CC-cEEEEecCCHHHHHHHHHcCC
Confidence 3566789999999999876432 1112233444443311 23 367899999999999999999
Q ss_pred Cccccc
Q 000265 1248 EEFGFS 1253 (1760)
Q Consensus 1248 daVg~G 1253 (1760)
|+|.+|
T Consensus 217 D~I~vG 222 (404)
T PRK06843 217 DCLKVG 222 (404)
T ss_pred CEEEEC
Confidence 998765
No 281
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=89.56 E-value=0.8 Score=53.09 Aligned_cols=72 Identities=15% Similarity=0.009 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCCEEEE---ecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000265 1166 VGVIASGVVKGHADHVLI---SGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvI---sG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
....|....+.|||.+.| ++..|.. +-...+.++.+.. .+||+++||||+-+||-++
T Consensus 37 p~~~a~~~~~~g~~~l~i~DLd~~~~~~-------------~n~~~i~~i~~~~-------~~~v~vgGGir~~edv~~~ 96 (233)
T cd04723 37 PLDVARAYKELGFRGLYIADLDAIMGRG-------------DNDEAIRELAAAW-------PLGLWVDGGIRSLENAQEW 96 (233)
T ss_pred HHHHHHHHHHCCCCEEEEEeCccccCCC-------------ccHHHHHHHHHhC-------CCCEEEecCcCCHHHHHHH
Confidence 345777788889998866 4443211 1233455554431 4899999999999999999
Q ss_pred HHcCCCccccchhHH
Q 000265 1243 ALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1243 laLGAdaVg~GTa~L 1257 (1760)
+.+||+.|-+||..+
T Consensus 97 l~~Ga~~viigt~~~ 111 (233)
T cd04723 97 LKRGASRVIVGTETL 111 (233)
T ss_pred HHcCCCeEEEcceec
Confidence 999999999999654
No 282
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=89.30 E-value=1.8 Score=51.54 Aligned_cols=92 Identities=21% Similarity=0.295 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
++.+.|..+|+..|..+ |.-.++.--.-+..++++|||+|.+|+.. | .-+.++.+.|
T Consensus 173 ~i~~Av~~aR~~~~~~~---kIEVEvesle~~~eAl~agaDiImLDNm~----------------~--e~~~~av~~l-- 229 (280)
T COG0157 173 SITEAVRRARAAAPFTK---KIEVEVESLEEAEEALEAGADIIMLDNMS----------------P--EELKEAVKLL-- 229 (280)
T ss_pred cHHHHHHHHHHhCCCCc---eEEEEcCCHHHHHHHHHcCCCEEEecCCC----------------H--HHHHHHHHHh--
Confidence 46778888988765544 33323344455677999999999999872 2 2455666554
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+++.++.+-++||| |...+......|.|.+.+|..
T Consensus 230 -~~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~gal 264 (280)
T COG0157 230 -GLAGRALLEASGGI-TLENIREYAETGVDVISVGAL 264 (280)
T ss_pred -ccCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeCcc
Confidence 56778999999999 678899999999999988864
No 283
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=89.20 E-value=3 Score=51.40 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHhCC------CCc--eEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHH
Q 000265 1135 YSIEDLAQLIYDLKNANP------GAR--ISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE 1206 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p------~~p--V~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~ 1206 (1760)
.++|+..+.|.++|+.+| +.+ |.+=+.....-...+..+.++|+|+|+||...|-+ .+ ..
T Consensus 70 ~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s--------~~----~~ 137 (352)
T PF00478_consen 70 MSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHS--------EH----VI 137 (352)
T ss_dssp SCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTS--------HH----HH
T ss_pred CCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccH--------HH----HH
Confidence 678999999999987532 233 33333222233456677899999999999765432 11 11
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000265 1207 LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1207 ~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
..+..+.+.. .+++|| .|.+.|+..+...+..|||+|=+|
T Consensus 138 ~~ik~ik~~~------~~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 138 DMIKKIKKKF------PDVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHS------TTSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHhC------CCceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 2333333321 257777 788999999999999999976555
No 284
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=89.05 E-value=1.9 Score=49.33 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=31.2
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
.+|+++.||| |..++...+..||++|+++++++-
T Consensus 151 ~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 151 DVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred CCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhcc
Confidence 5999999999 889999999999999999998643
No 285
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=89.05 E-value=1.5 Score=51.74 Aligned_cols=76 Identities=18% Similarity=0.109 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCC-CCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDGG-TGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GG-TGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
....+|....+.|||.|.+.--++- ++.. |-...+.++.+. ..+||+++|||++-.|+.+.+
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~----------~n~~~i~~i~~~-------~~~pv~~gGGi~s~~d~~~l~ 93 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSE----------PNYELIENLASE-------CFMPLCYGGGIKTLEQAKKIF 93 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCc----------ccHHHHHHHHHh-------CCCCEEECCCCCCHHHHHHHH
Confidence 3346778888999999877544332 2211 233455555543 258999999999999999999
Q ss_pred HcCCCccccchhHH
Q 000265 1244 LLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L 1257 (1760)
.+||+.|-+|++.+
T Consensus 94 ~~G~~~vvigs~~~ 107 (258)
T PRK01033 94 SLGVEKVSINTAAL 107 (258)
T ss_pred HCCCCEEEEChHHh
Confidence 99999999998644
No 286
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=89.01 E-value=1.5 Score=49.21 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=30.6
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
.+|+++.||| |..++...+..||++|++|+...
T Consensus 143 ~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 143 QVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred CCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 4899999999 99999999999999999998754
No 287
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=88.97 E-value=3.1 Score=48.74 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1166 VGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
.-..+....+.|+..|++.--+= ||- .| |-...+.+..+.. ++|||++||+++=.|+-.+..
T Consensus 149 ~~~l~~~~~~~g~~~ii~TdI~~DGtl---------~G-~n~~l~~~l~~~~-------~ipviaSGGv~s~~Di~~l~~ 211 (241)
T COG0106 149 LEELAKRLEEVGLAHILYTDISRDGTL---------SG-PNVDLVKELAEAV-------DIPVIASGGVSSLDDIKALKE 211 (241)
T ss_pred HHHHHHHHHhcCCCeEEEEeccccccc---------CC-CCHHHHHHHHHHh-------CcCEEEecCcCCHHHHHHHHh
Confidence 33455667777888777643211 121 12 3345556666552 699999999999999999999
Q ss_pred c-CCCccccchhHHH
Q 000265 1245 L-GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 L-GAdaVg~GTa~L~ 1258 (1760)
+ |.+++-+|+++..
T Consensus 212 ~~G~~GvIvG~ALy~ 226 (241)
T COG0106 212 LSGVEGVIVGRALYE 226 (241)
T ss_pred cCCCcEEEEehHHhc
Confidence 9 9999999998765
No 288
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=88.94 E-value=1.7 Score=50.38 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCCEEEE-e--c-CCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000265 1168 VIASGVVKGHADHVLI-S--G-HDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvI-s--G-~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
..|..=.+.|||=++. + . ++|+ -+....+.++.+.+ -||+-+.|||++-.|+-+.|
T Consensus 34 elA~~Y~e~GADElvFlDItAs~~gr-------------~~~~~vv~r~A~~v-------fiPltVGGGI~s~eD~~~ll 93 (256)
T COG0107 34 ELAKRYNEEGADELVFLDITASSEGR-------------ETMLDVVERVAEQV-------FIPLTVGGGIRSVEDARKLL 93 (256)
T ss_pred HHHHHHHHcCCCeEEEEecccccccc-------------hhHHHHHHHHHhhc-------eeeeEecCCcCCHHHHHHHH
Confidence 4566677899998764 2 1 2222 14455666666653 59999999999999999999
Q ss_pred HcCCCccccchhHHH
Q 000265 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
.+|||-|.+.|+++.
T Consensus 94 ~aGADKVSINsaAv~ 108 (256)
T COG0107 94 RAGADKVSINSAAVK 108 (256)
T ss_pred HcCCCeeeeChhHhc
Confidence 999999999998876
No 289
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=88.87 E-value=1.4 Score=50.71 Aligned_cols=76 Identities=20% Similarity=0.147 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCC-CCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1166 VGVIASGVVKGHADHVLISGHDGG-TGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvIsG~~GG-TGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
...+|....+.|+|.|.|.--++. ++. | +-...+.++.+. ..+||+++||+++-.|+.+++.
T Consensus 32 p~~~a~~~~~~g~~~i~i~dl~~~~~~~---------~-~n~~~~~~i~~~-------~~~pv~~~ggi~~~~d~~~~~~ 94 (232)
T TIGR03572 32 PVNAARIYNAKGADELIVLDIDASKRGR---------E-PLFELISNLAEE-------CFMPLTVGGGIRSLEDAKKLLS 94 (232)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCcccCC---------C-CCHHHHHHHHHh-------CCCCEEEECCCCCHHHHHHHHH
Confidence 345677788899997766433331 211 1 122344444443 2589999999999999999999
Q ss_pred cCCCccccchhHHH
Q 000265 1245 LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~ 1258 (1760)
+||+.|.+|+..+-
T Consensus 95 ~G~~~vilg~~~l~ 108 (232)
T TIGR03572 95 LGADKVSINTAALE 108 (232)
T ss_pred cCCCEEEEChhHhc
Confidence 99999999987553
No 290
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.86 E-value=2.7 Score=50.62 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=61.9
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000265 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
.+.+..+|+..+..+|-|-. .--.-+..++++|||+|.+|+.. | .-+.++.+.+
T Consensus 193 ~~av~~~r~~~~~~kIeVEv----etleea~eA~~aGaDiImLDnms----------------p--e~l~~av~~~---- 246 (294)
T PRK06978 193 GAALDAAFALNAGVPVQIEV----ETLAQLETALAHGAQSVLLDNFT----------------L--DMMREAVRVT---- 246 (294)
T ss_pred HHHHHHHHHhCCCCcEEEEc----CCHHHHHHHHHcCCCEEEECCCC----------------H--HHHHHHHHhh----
Confidence 34566666654444555543 33345667899999999999872 1 3445555543
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.++.|.++||| |...+...+..|.|.+.+|..
T Consensus 247 -~~~~~lEaSGGI-t~~ni~~yA~tGVD~IS~gal 279 (294)
T PRK06978 247 -AGRAVLEVSGGV-NFDTVRAFAETGVDRISIGAL 279 (294)
T ss_pred -cCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 347899999999 688899999999999988864
No 291
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.80 E-value=2.8 Score=50.11 Aligned_cols=88 Identities=10% Similarity=0.114 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000265 1140 LAQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
+.+.+..+|+..| ...|.|=. ... .-+..+.++|||+|.++. .| ...|.++.+.+
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv---~tl-eea~~A~~~gaDyI~lD~---------------~~---~e~l~~~~~~~-- 229 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVET---ETE-EQVREAVAAGADIIMFDN---------------RT---PDEIREFVKLV-- 229 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEe---CCH-HHHHHHHHcCCCEEEECC---------------CC---HHHHHHHHHhc--
Confidence 6677888888875 33444432 222 345668899999998842 12 24566666543
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.+++|.+.||| |...+...+..|||.+.+|..
T Consensus 230 ---~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l 262 (277)
T PRK08072 230 ---PSAIVTEASGGI-TLENLPAYGGTGVDYISLGFL 262 (277)
T ss_pred ---CCCceEEEECCC-CHHHHHHHHHcCCCEEEEChh
Confidence 246899999999 899999999999999999974
No 292
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=88.72 E-value=3.3 Score=47.62 Aligned_cols=78 Identities=22% Similarity=0.117 Sum_probs=59.4
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCc
Q 000265 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEE 1249 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAda 1249 (1760)
|..++++||++|.. +-|+ ++++|.+....+.++.+.+..+++. . =+...|+||..++..|+.+||+.
T Consensus 115 a~~Aa~AGA~yvsP--~vgR--------~~~~g~dg~~~i~~i~~~~~~~~~~--t-kil~As~r~~~ei~~a~~~Gad~ 181 (211)
T cd00956 115 ALLAAKAGATYVSP--FVGR--------IDDLGGDGMELIREIRTIFDNYGFD--T-KILAASIRNPQHVIEAALAGADA 181 (211)
T ss_pred HHHHHHcCCCEEEE--ecCh--------HhhcCCCHHHHHHHHHHHHHHcCCC--c-eEEecccCCHHHHHHHHHcCCCE
Confidence 34588899998533 3233 4667777788889999988877653 3 44566899999999999999999
Q ss_pred cccchhHHHHh
Q 000265 1250 FGFSTAPLITL 1260 (1760)
Q Consensus 1250 Vg~GTa~L~Al 1260 (1760)
|=+.-..|-.+
T Consensus 182 vTv~~~vl~~l 192 (211)
T cd00956 182 ITLPPDVLEQL 192 (211)
T ss_pred EEeCHHHHHHH
Confidence 98888777655
No 293
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=88.62 E-value=2.4 Score=45.43 Aligned_cols=74 Identities=19% Similarity=0.151 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
-...++..+.+.+||+|.||+..+.+ ...++++.+.|++.+.. +++|++ ||.....|......
T Consensus 41 s~e~~v~aa~e~~adii~iSsl~~~~---------------~~~~~~~~~~L~~~g~~-~i~viv-GG~~~~~~~~~l~~ 103 (132)
T TIGR00640 41 TPEEIARQAVEADVHVVGVSSLAGGH---------------LTLVPALRKELDKLGRP-DILVVV-GGVIPPQDFDELKE 103 (132)
T ss_pred CHHHHHHHHHHcCCCEEEEcCchhhh---------------HHHHHHHHHHHHhcCCC-CCEEEE-eCCCChHhHHHHHH
Confidence 34567788899999999999986542 34678888889888764 577666 66556788999999
Q ss_pred cCCCcc-ccchh
Q 000265 1245 LGAEEF-GFSTA 1255 (1760)
Q Consensus 1245 LGAdaV-g~GTa 1255 (1760)
+|.+++ ..||.
T Consensus 104 ~Gvd~~~~~gt~ 115 (132)
T TIGR00640 104 MGVAEIFGPGTP 115 (132)
T ss_pred CCCCEEECCCCC
Confidence 999864 44443
No 294
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=88.40 E-value=1.2 Score=52.10 Aligned_cols=74 Identities=9% Similarity=-0.014 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCCEEEEecCC-CCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000265 1167 GVIASGVVKGHADHVLISGHD-GGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~-GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
-+.+..+.+.|+..|++.--+ =||. .| |-...+.++.+. .++|||++||+++-.|+.++..+
T Consensus 147 ~e~~~~~~~~g~~~ii~tdI~rdGt~---------~G-~d~el~~~l~~~-------~~~pviasGGv~s~~Dl~~l~~~ 209 (241)
T PRK14114 147 VSLLKRLKEYGLEEIVHTEIEKDGTL---------QE-HDFSLTRKIAIE-------AEVKVFAAGGISSENSLKTAQRV 209 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeechhhcC---------CC-cCHHHHHHHHHH-------CCCCEEEECCCCCHHHHHHHHhc
Confidence 345566778888888775321 1221 12 334455555544 25899999999999999999998
Q ss_pred -----C-CCccccchhHH
Q 000265 1246 -----G-AEEFGFSTAPL 1257 (1760)
Q Consensus 1246 -----G-AdaVg~GTa~L 1257 (1760)
| +++|-+|+++.
T Consensus 210 ~~~~~g~v~gvivg~Al~ 227 (241)
T PRK14114 210 HRETNGLLKGVIVGRAFL 227 (241)
T ss_pred ccccCCcEEEEEEehHHH
Confidence 6 99999999854
No 295
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=88.23 E-value=1.3 Score=51.34 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=31.6
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
.+||+++|||+|-.|+.+.+.+||+.|-+||+++
T Consensus 73 ~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 73 GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 5899999999999999999999999999999744
No 296
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=88.18 E-value=1.3 Score=49.45 Aligned_cols=76 Identities=18% Similarity=0.000 Sum_probs=48.8
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCcc
Q 000265 1171 SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEF 1250 (1760)
Q Consensus 1171 ~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaV 1250 (1760)
..+.+.|+|+|.++-. --|+.-+. .....| ...+.++.+.. .++||++.||| +..++..++.+||++|
T Consensus 110 ~~a~~~g~dyi~~~~v-~~t~~k~~-~~~~~g---~~~l~~~~~~~------~~~pv~a~GGI-~~~~~~~~~~~G~~gv 177 (196)
T TIGR00693 110 AEAEAEGADYIGFGPI-FPTPTKKD-PAPPAG---VELLREIAATS------IDIPIVAIGGI-TLENAAEVLAAGADGV 177 (196)
T ss_pred HHHhHcCCCEEEECCc-cCCCCCCC-CCCCCC---HHHHHHHHHhc------CCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 3477899999998542 11111000 000012 23444444331 14899999999 6899999999999999
Q ss_pred ccchhHHH
Q 000265 1251 GFSTAPLI 1258 (1760)
Q Consensus 1251 g~GTa~L~ 1258 (1760)
.+|++++-
T Consensus 178 a~~~~i~~ 185 (196)
T TIGR00693 178 AVVSAIMQ 185 (196)
T ss_pred EEhHHhhC
Confidence 99998663
No 297
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=88.11 E-value=1 Score=52.18 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHcCCCEEEE---ecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLI---SGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAI 1241 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvI---sG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaK 1241 (1760)
....+|....+.|||-|.| ++..-|. + +....+.++.+.. .+||+++||||+-.|+.+
T Consensus 30 dP~~~a~~~~~~g~~~l~ivDLdaa~~g~-----------~-~n~~~i~~i~~~~-------~~~i~vgGGIrs~ed~~~ 90 (229)
T PF00977_consen 30 DPVEVAKAFNEQGADELHIVDLDAAKEGR-----------G-SNLELIKEIAKET-------GIPIQVGGGIRSIEDAER 90 (229)
T ss_dssp CHHHHHHHHHHTT-SEEEEEEHHHHCCTH-----------H-HHHHHHHHHHHHS-------SSEEEEESSE-SHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEEccCcccCc-----------h-hHHHHHHHHHhcC-------CccEEEeCccCcHHHHHH
Confidence 3445777778889998765 4442111 0 1223445554431 389999999999999999
Q ss_pred HHHcCCCccccchhHHH
Q 000265 1242 AALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1242 AlaLGAdaVg~GTa~L~ 1258 (1760)
.+.+||+.|-+||.++-
T Consensus 91 ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 91 LLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHTT-SEEEESHHHHH
T ss_pred HHHhCCCEEEeChHHhh
Confidence 99999999999998664
No 298
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=88.09 E-value=1.5 Score=50.17 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCCEEEE---ecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000265 1166 VGVIASGVVKGHADHVLI---SGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvI---sG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
...+|....+.|||.|.| ++...|.+ .....+.++.+.. .+||+++|||++-.|+.++
T Consensus 30 p~~~a~~~~~~g~~~l~v~dl~~~~~g~~------------~~~~~i~~i~~~~-------~~pi~~ggGI~~~ed~~~~ 90 (230)
T TIGR00007 30 PVEAAKKWEEEGAERIHVVDLDGAKEGGP------------VNLPVIKKIVRET-------GVPVQVGGGIRSLEDVEKL 90 (230)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccCCC------------CcHHHHHHHHHhc-------CCCEEEeCCcCCHHHHHHH
Confidence 445677788889998866 34322211 1123445554431 4799999999999999999
Q ss_pred HHcCCCccccchhHHH
Q 000265 1243 ALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1243 laLGAdaVg~GTa~L~ 1258 (1760)
+.+||+.|-+|+..+-
T Consensus 91 ~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 91 LDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHcCCCEEEEChHHhh
Confidence 9999999999987553
No 299
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=88.03 E-value=8.4 Score=47.87 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=95.7
Q ss_pred CCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccccHHHHH
Q 000265 688 GPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767 (1760)
Q Consensus 688 sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~~~~~~~~ip~lLav 767 (1760)
.|-++.+++++|++.-.-.+-.+-+ . --+.|..|++.|+..|++|-.+...-...+|++.++
T Consensus 220 d~~~~w~~i~~ir~~~~~pviiKgV---~---------------~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L 281 (361)
T cd04736 220 DASFNWQDLRWLRDLWPHKLLVKGI---V---------------TAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEAL 281 (361)
T ss_pred CCcCCHHHHHHHHHhCCCCEEEecC---C---------------CHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHH
Confidence 4778999999998842111111111 1 126788899999999999987644333445566666
Q ss_pred HHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 000265 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKK 844 (1760)
Q Consensus 768 ~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~n 844 (1760)
..+.+.. + +-||+ .|-+|.--|++-.|-+||++| .|+|- .|.. ..++.+..
T Consensus 282 ~ei~~~~---~----~~vi~-dGGIr~g~Dv~KALaLGA~aV~iGr~~l~-----~la~-------------~G~~gv~~ 335 (361)
T cd04736 282 AEIVAAT---Y----KPVLI-DSGIRRGSDIVKALALGANAVLLGRATLY-----GLAA-------------RGEAGVSE 335 (361)
T ss_pred HHHHHHh---C----CeEEE-eCCCCCHHHHHHHHHcCCCEEEECHHHHH-----HHHh-------------cCHHHHHH
Confidence 6665543 2 55676 578999999999999999998 56653 1111 24567788
Q ss_pred HHHHHHHHHHHHHHhhchhhhhc
Q 000265 845 YFKASNYGMMKVLAKMGISTLAS 867 (1760)
Q Consensus 845 y~~a~~~GllKvmsKMGIstl~S 867 (1760)
+.+-+..-|--.|.-+|+++|+.
T Consensus 336 ~l~~l~~el~~~m~l~G~~~i~~ 358 (361)
T cd04736 336 VLRLLKEEIDRTLALIGCPDIAS 358 (361)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHH
Confidence 88889999999999999999875
No 300
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=87.89 E-value=1.4 Score=52.00 Aligned_cols=102 Identities=19% Similarity=0.133 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHH
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQT 1215 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~ 1215 (1760)
+.+.|..++...+.. +.-+.|-.- .-.. ...+.++|+++|-|.+.+=.|-. +-.. .-.+....
T Consensus 143 ~~~~l~~l~~~a~~l--Gle~lVEVh---~~~E-l~~al~~~a~iiGINnRdL~tf~----------vd~~-~~~~l~~~ 205 (254)
T PF00218_consen 143 SDDQLEELLELAHSL--GLEALVEVH---NEEE-LERALEAGADIIGINNRDLKTFE----------VDLN-RTEELAPL 205 (254)
T ss_dssp GHHHHHHHHHHHHHT--T-EEEEEES---SHHH-HHHHHHTT-SEEEEESBCTTTCC----------BHTH-HHHHHHCH
T ss_pred CHHHHHHHHHHHHHc--CCCeEEEEC---CHHH-HHHHHHcCCCEEEEeCccccCcc----------cChH-HHHHHHhh
Confidence 446667777776665 555555432 2223 35577999999999887654421 1111 11122222
Q ss_pred HHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000265 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1216 L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
+..++.+++.+||.|..|+.....+|+|+|-+|+++|-+
T Consensus 206 -----ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 206 -----IPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp -----SHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred -----CccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 234689999999999999999999999999999998863
No 301
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=87.88 E-value=4.8 Score=45.61 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecC-CCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGH-DGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~-~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+....+..+|.. +..+++-+.+...... +. ....++|+|.+... .|+||.. + .. -...-+.++.+...
T Consensus 97 ~~~~~~~~~~~~--~~~~g~~~~~~t~~e~-~~-~~~~~~d~i~~~~~~~g~tg~~-~---~~---~~~~~i~~~~~~~~ 165 (220)
T PRK05581 97 HIHRLLQLIKSA--GIKAGLVLNPATPLEP-LE-DVLDLLDLVLLMSVNPGFGGQK-F---IP---EVLEKIRELRKLID 165 (220)
T ss_pred hHHHHHHHHHHc--CCEEEEEECCCCCHHH-HH-HHHhhCCEEEEEEECCCCCccc-c---cH---HHHHHHHHHHHHHH
Confidence 345567777765 5556554422222222 22 33456898877653 5555431 1 00 11223333433322
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
..++ .++|.++|||+. .++.+++..|||.|-+|++++-
T Consensus 166 ~~~~--~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 166 ERGL--DILIEVDGGINA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred hcCC--CceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhC
Confidence 1111 256789999999 7999998899999999998653
No 302
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=87.77 E-value=3.8 Score=52.24 Aligned_cols=100 Identities=12% Similarity=0.027 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
.++|.+++...+.. +.-..|-. ..- .-+..+.++||++|=|.+.+=.|-- +- +..+.+.+
T Consensus 145 ~~~l~~l~~~a~~l--Gl~~lvEv---h~~-~El~~al~~~a~iiGiNnRdL~t~~--------vd------~~~~~~l~ 204 (454)
T PRK09427 145 DEQYRQLAAVAHSL--NMGVLTEV---SNE-EELERAIALGAKVIGINNRNLRDLS--------ID------LNRTRELA 204 (454)
T ss_pred HHHHHHHHHHHHHc--CCcEEEEE---CCH-HHHHHHHhCCCCEEEEeCCCCccce--------EC------HHHHHHHH
Confidence 45677777777665 44444442 122 3345588999999988776433310 11 11122222
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
.. +..++.+++-+||+|..|+..+. -|||+|-+|+++|-+
T Consensus 205 ~~--ip~~~~~vseSGI~t~~d~~~~~-~~~davLiG~~lm~~ 244 (454)
T PRK09427 205 PL--IPADVIVISESGIYTHAQVRELS-PFANGFLIGSSLMAE 244 (454)
T ss_pred hh--CCCCcEEEEeCCCCCHHHHHHHH-hcCCEEEECHHHcCC
Confidence 21 34578899999999999998865 489999999998874
No 303
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=87.42 E-value=2.1 Score=50.04 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=46.2
Q ss_pred HcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCce-EEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000265 1175 KGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRT-ILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1175 kaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV-~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
-.|...+.+... +++|.. +....+.++.+.+ .+ ||++.|||++..++.+++..|||.|.+|
T Consensus 152 ~~g~~~vYle~g-s~~g~~----------~~~e~I~~v~~~~-------~~~pvivGGGIrs~e~a~~~l~~GAD~VVVG 213 (232)
T PRK04169 152 YLGMPIVYLEYG-GGAGDP----------VPPEMVKAVKKAL-------DITPLIYGGGIRSPEQARELMAAGADTIVVG 213 (232)
T ss_pred HcCCCeEEEECC-CCCCCC----------CCHHHHHHHHHhc-------CCCcEEEECCCCCHHHHHHHHHhCCCEEEEC
Confidence 357777777543 222211 2234556665542 35 9999999999999999999999999999
Q ss_pred hhHH
Q 000265 1254 TAPL 1257 (1760)
Q Consensus 1254 Ta~L 1257 (1760)
|++.
T Consensus 214 Sai~ 217 (232)
T PRK04169 214 NIIE 217 (232)
T ss_pred hHHh
Confidence 9865
No 304
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=87.35 E-value=1.9 Score=49.91 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=49.8
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCC
Q 000265 1169 IASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1169 iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAd 1248 (1760)
-|..+...|..+|.++ ..|.. + + ...+..+.+.+ ..++|++.|||||..++.+++.+|||
T Consensus 140 yA~aae~~g~~ivyLe-~SG~~-----------~-~-~e~I~~v~~~~------~~~pl~vGGGIrs~e~a~~l~~aGAD 199 (219)
T cd02812 140 YALAAEYLGMPIVYLE-YSGAY-----------G-P-PEVVRAVKKVL------GDTPLIVGGGIRSGEQAKEMAEAGAD 199 (219)
T ss_pred HHHHHHHcCCeEEEeC-CCCCc-----------C-C-HHHHHHHHHhc------CCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 3555778898888898 22211 1 1 23344444431 14899999999999999999999999
Q ss_pred ccccchhHH
Q 000265 1249 EFGFSTAPL 1257 (1760)
Q Consensus 1249 aVg~GTa~L 1257 (1760)
.|-+||++.
T Consensus 200 ~VVVGsai~ 208 (219)
T cd02812 200 TIVVGNIVE 208 (219)
T ss_pred EEEECchhh
Confidence 999999754
No 305
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=87.21 E-value=6.6 Score=48.09 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=79.5
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCCc-------------------cccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCc
Q 000265 734 AEARDAIKEGYTLLVLSDRAFSSKRV-------------------AVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPRE 794 (1760)
Q Consensus 734 ~~a~~av~~G~~iliLsDr~~~~~~~-------------------~ip~lLav~avh~~Li~~~~R~~~~lvvesge~re 794 (1760)
+.|....+.|+..|++|=++ +...+ .+|..-++-.+ +. ++.++-||+ +|-+|+
T Consensus 194 ~~a~~L~~aGvd~I~Vsg~g-Gt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~-----~~-~~~~ipVIa-sGGI~~ 265 (333)
T TIGR02151 194 EVAKLLADAGVSAIDVAGAG-GTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEV-----RS-DAPDAPIIA-SGGLRT 265 (333)
T ss_pred HHHHHHHHcCCCEEEECCCC-CCcccchhhhcccccccchhhhcccHhHHHHHHHH-----Hh-cCCCCeEEE-ECCCCC
Confidence 45556667899999998753 21111 22322222222 11 345677666 899999
Q ss_pred HHHHHHHHhcCcccccHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhcccccch
Q 000265 795 VHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQI 873 (1760)
Q Consensus 795 ~Hh~a~L~GyGA~av~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~gaqi 873 (1760)
.-|++-.|-.|||+|- ++...+..+.. ...+.+.+|+..+...|-++|..+|.++++..++..+
T Consensus 266 ~~di~kaLalGAd~V~--igr~~L~~~~~-------------~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~el~~~~~ 329 (333)
T TIGR02151 266 GLDVAKAIALGADAVG--MARPFLKAALD-------------EGEEAVIEEIELIIEELKVAMFLTGAKTIAELKKVPL 329 (333)
T ss_pred HHHHHHHHHhCCCeeh--hhHHHHHHHHh-------------cCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHccCCe
Confidence 9999999999999994 12222222211 1357788999999999999999999999999877664
No 306
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=87.15 E-value=4.7 Score=47.57 Aligned_cols=102 Identities=11% Similarity=0.016 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHH
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQ 1214 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q 1214 (1760)
.+.++|..++...+.. +.-+.|-. . .- .-+..+.++||++|-|.+.+=.|-- +. +..+.+
T Consensus 135 L~~~~l~~l~~~a~~l--Gle~LVEV-h--~~-~El~~a~~~ga~iiGINnRdL~t~~--------vd------~~~~~~ 194 (247)
T PRK13957 135 LTPSQIKSFLKHASSL--GMDVLVEV-H--TE-DEAKLALDCGAEIIGINTRDLDTFQ--------IH------QNLVEE 194 (247)
T ss_pred CCHHHHHHHHHHHHHc--CCceEEEE-C--CH-HHHHHHHhCCCCEEEEeCCCCccce--------EC------HHHHHH
Confidence 4456788887777665 44444443 1 11 2345588999999988776543311 11 111222
Q ss_pred HHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000265 1215 TLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1215 ~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
.+.. +...+.+|+.+||+|..|+.....+ ||+|-+|+++|-+
T Consensus 195 L~~~--ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 195 VAAF--LPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred HHhh--CCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence 2211 3456789999999999999998876 9999999998864
No 307
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=86.98 E-value=5.2 Score=48.84 Aligned_cols=95 Identities=17% Similarity=0.104 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccc--cCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHH
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSE--AGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAET 1212 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~--~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev 1212 (1760)
++++++.+.|..+|. ++.|-.... ......+..+.++|+|+|.|+-..|.. . .+...+.++
T Consensus 67 ~~~~~~~~~i~~vk~-----~l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~--------~----~~~~~i~~i 129 (325)
T cd00381 67 MSIEEQAEEVRKVKG-----RLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHS--------V----YVIEMIKFI 129 (325)
T ss_pred CCHHHHHHHHHHhcc-----CceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCc--------H----HHHHHHHHH
Confidence 567888777777763 222322111 122345677889999999998653321 0 122333344
Q ss_pred HHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000265 1213 HQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1213 ~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
++. . .+++|++ |.+.|..++.+++.+|||.+-+|
T Consensus 130 k~~----~--p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 130 KKK----Y--PNVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHH----C--CCceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 332 1 2477877 99999999999999999998764
No 308
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=86.90 E-value=1.5 Score=51.12 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000265 1168 VIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
..+..+.+.|+.-|++..-+- ||. .|+.. ..+..+.+. ..+++++||+++-.|+.++..+|
T Consensus 150 e~~~~l~~~g~~~ii~tdI~~dGt~---------~G~d~-el~~~~~~~--------~~~viasGGv~s~~Dl~~l~~~G 211 (232)
T PRK13586 150 DGIKKVNELELLGIIFTYISNEGTT---------KGIDY-NVKDYARLI--------RGLKEYAGGVSSDADLEYLKNVG 211 (232)
T ss_pred HHHHHHHhcCCCEEEEecccccccC---------cCcCH-HHHHHHHhC--------CCCEEEECCCCCHHHHHHHHHCC
Confidence 445556677887766643211 221 23333 334444322 12489999999999999999999
Q ss_pred CCccccchhHH
Q 000265 1247 AEEFGFSTAPL 1257 (1760)
Q Consensus 1247 AdaVg~GTa~L 1257 (1760)
+++|-+|+++.
T Consensus 212 ~~gvivg~Aly 222 (232)
T PRK13586 212 FDYIIVGMAFY 222 (232)
T ss_pred CCEEEEehhhh
Confidence 99999999854
No 309
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=86.87 E-value=1.5 Score=51.41 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=48.5
Q ss_pred HHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH---
Q 000265 1168 VIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA--- 1243 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl--- 1243 (1760)
..+..+.+.|+..|++.--+- ||.. | |-...+.++.+. .++|||++||+++-.|+.+.-
T Consensus 153 ~~~~~~~~~g~~~ii~tdI~~dGt~~---------G-~d~~l~~~l~~~-------~~~pviasGGv~s~eDl~~l~~l~ 215 (243)
T TIGR01919 153 VLERLLDSGGCSRVVVTDSKKDGLSG---------G-PNELLLEVVAAR-------TDAIVAASGGSSLLDDLRAIKYLD 215 (243)
T ss_pred HHHHHHHhCCCCEEEEEecCCcccCC---------C-cCHHHHHHHHhh-------CCCCEEEECCcCCHHHHHHHHhhc
Confidence 344556677887777643211 2321 3 223344444443 258999999999999999875
Q ss_pred HcCCCccccchhHH
Q 000265 1244 LLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L 1257 (1760)
.+|+++|-+|+++.
T Consensus 216 ~~Gv~gvivg~Al~ 229 (243)
T TIGR01919 216 EGGVSVAIGGKLLY 229 (243)
T ss_pred cCCeeEEEEhHHHH
Confidence 35999999999854
No 310
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=86.76 E-value=2.1 Score=49.88 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=43.1
Q ss_pred HcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccch
Q 000265 1175 KGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFST 1254 (1760)
Q Consensus 1175 kaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GT 1254 (1760)
=.|..+|-+....|.- |.+.. .+..+.+.+ .+++||..|||||++.+.+++..|||.|.+||
T Consensus 151 ~~g~~~iYLEaGSGa~-----------~~v~~-~v~~~~~~~------~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn 212 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGAY-----------GPVPE-EVIAAVKKL------SDIPLIVGGGIRSPEQAREMAEAGADTIVVGN 212 (230)
T ss_dssp HTT-SEEEEE--TTSS-----------S-HHH-HHHHHHHHS------SSSEEEEESS--SHHHHHHHHCTTSSEEEESC
T ss_pred HhCCCEEEEEeCCCCC-----------CCccH-HHHHHHHhc------CCccEEEeCCcCCHHHHHHHHHCCCCEEEECC
Confidence 4789999997643421 11212 223333332 36999999999999999999999999999999
Q ss_pred hHH
Q 000265 1255 APL 1257 (1760)
Q Consensus 1255 a~L 1257 (1760)
++-
T Consensus 213 ~ie 215 (230)
T PF01884_consen 213 AIE 215 (230)
T ss_dssp HHH
T ss_pred EEE
Confidence 754
No 311
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=86.60 E-value=4 Score=54.42 Aligned_cols=101 Identities=12% Similarity=0.045 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
.++|..++...+.. +.-+.|-. . . ..-...+.++||++|=|.+.+=-| +-+- +..+.+.+
T Consensus 146 ~~~l~~l~~~a~~l--Gme~LvEv-h--~-~~el~~a~~~ga~iiGINnRdL~t----------f~vd----~~~t~~L~ 205 (695)
T PRK13802 146 DAQLKHLLDLAHEL--GMTVLVET-H--T-REEIERAIAAGAKVIGINARNLKD----------LKVD----VNKYNELA 205 (695)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEe-C--C-HHHHHHHHhCCCCEEEEeCCCCcc----------ceeC----HHHHHHHH
Confidence 45677777777665 45555543 1 1 123456889999999887764322 1111 12222222
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
.. +...+.+|+.+||+|..|+..+..+|||+|-+|+++|-+
T Consensus 206 ~~--ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 206 AD--LPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred hh--CCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence 22 345688999999999999999999999999999998875
No 312
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=86.42 E-value=1.9 Score=50.23 Aligned_cols=75 Identities=17% Similarity=0.126 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000265 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
...|+...+.|||-+.|---+|-.+.. +-...+.++.+.. -.||+++|||||-.|+-+++.+|
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a~~~~----------~n~~~i~~i~~~~-------~~~v~vGGGIrs~e~~~~~l~~G 95 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAAEGVG----------NNEMYIKEISKIG-------FDWIQVGGGIRDIEKAKRLLSLD 95 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcCCCc----------chHHHHHHHHhhC-------CCCEEEeCCcCCHHHHHHHHHCC
Confidence 456777778999988663332211111 1223444444421 14899999999999999999999
Q ss_pred CCccccchhHHH
Q 000265 1247 AEEFGFSTAPLI 1258 (1760)
Q Consensus 1247 AdaVg~GTa~L~ 1258 (1760)
|+.|-+||.++-
T Consensus 96 a~kvvigt~a~~ 107 (232)
T PRK13586 96 VNALVFSTIVFT 107 (232)
T ss_pred CCEEEECchhhC
Confidence 999999997553
No 313
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=86.34 E-value=2.3 Score=49.86 Aligned_cols=72 Identities=21% Similarity=0.176 Sum_probs=50.0
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCC
Q 000265 1169 IASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1169 iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAd 1248 (1760)
.|....+.|++.+.|.=-+|-.|.. +-...+.++.+.+ .+||+++|||||-.|+-..+.+||+
T Consensus 36 ~a~~~~~~g~~~lhivDLd~a~g~~----------~n~~~i~~i~~~~-------~~~v~vgGGIrs~e~~~~~l~~Ga~ 98 (243)
T TIGR01919 36 AAKWWEQGGAEWIHLVDLDAAFGGG----------NNEMMLEEVVKLL-------VVVEELSGGRRDDSSLRAALTGGRA 98 (243)
T ss_pred HHHHHHhCCCeEEEEEECCCCCCCc----------chHHHHHHHHHHC-------CCCEEEcCCCCCHHHHHHHHHcCCC
Confidence 3444567788877664333321111 1234556665542 3899999999999999999999999
Q ss_pred ccccchhHH
Q 000265 1249 EFGFSTAPL 1257 (1760)
Q Consensus 1249 aVg~GTa~L 1257 (1760)
.|-+||.++
T Consensus 99 ~vvigT~a~ 107 (243)
T TIGR01919 99 RVNGGTAAL 107 (243)
T ss_pred EEEECchhh
Confidence 999999755
No 314
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=86.33 E-value=4.2 Score=49.73 Aligned_cols=98 Identities=13% Similarity=0.172 Sum_probs=60.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHH----HHHHHHHHcC--CCEEEEecCCCCCCCCccccccccCCCH
Q 000265 1132 HDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVG----VIASGVVKGH--ADHVLISGHDGGTGASRWTGIKNAGLPW 1205 (1760)
Q Consensus 1132 hDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg----~iA~~aakaG--AD~IvIsG~~GGTGas~~~si~~~GlP~ 1205 (1760)
|-.|++|+++.++...+... ...+.|- +|+. .-+..+.+++ +|+|+||-..|-. . -.
T Consensus 75 Hk~~~~e~~~~~v~~~~~~~-~~~~~vs----vG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs--------~----~~ 137 (343)
T TIGR01305 75 HKHYSVDEWKAFATNSSPDC-LQNVAVS----SGSSDNDLEKMTSILEAVPQLKFICLDVANGYS--------E----HF 137 (343)
T ss_pred eeCCCHHHHHHHHHhhcccc-cceEEEE----eccCHHHHHHHHHHHhcCCCCCEEEEECCCCcH--------H----HH
Confidence 44578999988887654331 2334442 2332 2345677774 9999998765421 0 01
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000265 1206 ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1206 ~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
+..+..+.+.. . . +.+..|-|.|+.++..++..|||+|-+|
T Consensus 138 i~~ik~ir~~~-----p-~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 138 VEFVKLVREAF-----P-E-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhhC-----C-C-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 22233333321 1 1 4667788999999999999999986544
No 315
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=86.27 E-value=5.9 Score=48.84 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=68.1
Q ss_pred HHHHHHHHHhCC-CCceEEEEccccCHHHHHHHHHHc---CCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1141 AQLIYDLKNANP-GARISVKLVSEAGVGVIASGVVKG---HADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1141 aqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~iA~~aaka---GAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
...+..+++..| ..|+.|-.-.......-|..+.++ |+|+|.+|..+-. .|. ...++..+.+.|
T Consensus 187 ~~A~~~~~~~~p~~~~i~vevdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~~-----------~g~-l~~~v~~vr~~l 254 (343)
T PRK08662 187 VEAWKAFDEVVPPDVPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPSSR-----------RGN-FRKIVREVRWTL 254 (343)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCCC-----------Ccc-HHHHHHHHHHHH
Confidence 345777888777 456666543221111233445555 8999999997520 011 123555566667
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
.+.|. .++.|.++||| |...|...... .|.+++|+....+
T Consensus 255 d~~g~-~~v~IeaSGgI-~~~ni~~ya~~-vD~isvGs~~~~a 294 (343)
T PRK08662 255 DIRGY-EHVKIFVSGGL-DPERIRELRDV-VDGFGVGTYISFA 294 (343)
T ss_pred HhcCC-CCeEEEEeCCC-CHHHHHHHHHh-CCEEEcCccccCC
Confidence 66654 35899999999 88888888788 9999999976654
No 316
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=86.13 E-value=3.1 Score=48.29 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=67.3
Q ss_pred HHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCC------------CCC---------cccccc-
Q 000265 1142 QLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGT------------GAS---------RWTGIK- 1199 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGT------------Gas---------~~~si~- 1199 (1760)
..|.+||+.+|+.++-+|+.... .......+.++|||.|+|-.-.+.. |.- +...+.
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm~~~-p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~ 132 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLMVSN-PEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFP 132 (228)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC-HHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHH
Confidence 46888998888999999997542 3445577899999999884331110 000 000000
Q ss_pred ------------------ccCCCHH-HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhH
Q 000265 1200 ------------------NAGLPWE-LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1200 ------------------~~GlP~~-~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~ 1256 (1760)
..|.++. ..+.++.+. ++ ....+.|.+||||+. ..+..+...|||.+-+|++.
T Consensus 133 ~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~-~~--~~~~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI 204 (228)
T PTZ00170 133 LIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVREL-RK--RYPHLNIQVDGGINL-ETIDIAADAGANVIVAGSSI 204 (228)
T ss_pred HHccchhhhHHhhhcccCCCCcEecHHHHHHHHHH-HH--hcccCeEEECCCCCH-HHHHHHHHcCCCEEEEchHH
Confidence 0111111 122333322 22 223478999999976 47778899999999999873
No 317
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=85.86 E-value=7.7 Score=45.34 Aligned_cols=106 Identities=22% Similarity=0.230 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecC-CCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGH-DGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~-~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
++...|..+|+. +...+|-+-+.+.+..+..-+. -+|.|.|=.. .|.+|..- +. ....=+.++++.+.
T Consensus 96 ~~~~~i~~Ik~~--G~kaGlalnP~T~~~~l~~~l~--~vD~VLvMsV~PGf~GQ~f---i~----~~l~KI~~lr~~~~ 164 (229)
T PRK09722 96 QAFRLIDEIRRA--GMKVGLVLNPETPVESIKYYIH--LLDKITVMTVDPGFAGQPF---IP----EMLDKIAELKALRE 164 (229)
T ss_pred hHHHHHHHHHHc--CCCEEEEeCCCCCHHHHHHHHH--hcCEEEEEEEcCCCcchhc---cH----HHHHHHHHHHHHHH
Confidence 356677888877 5677777766666666543333 4798877332 23222211 11 12233455555555
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
++++ .+.|.+||||. ..-+.+....|||.+-+|+.+++
T Consensus 165 ~~~~--~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF 202 (229)
T PRK09722 165 RNGL--EYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLF 202 (229)
T ss_pred hcCC--CeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHc
Confidence 5543 58899999998 45777889999999999987665
No 318
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=85.63 E-value=4.2 Score=49.34 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCCCceEEEEccccCHHHHHHHHHH------cCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHH
Q 000265 1142 QLIYDLKNANPGARISVKLVSEAGVGVIASGVVK------GHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQT 1215 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aak------aGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~ 1215 (1760)
..+..+|+..+..+...|+..++.--.-+..+++ +|||+|.+|+.-- +| .... ....-|.++...
T Consensus 188 ~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~----~~----~~~~-~~~e~l~~av~~ 258 (308)
T PLN02716 188 NAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVV----PL----ENGD-VDVSMLKEAVEL 258 (308)
T ss_pred HHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcc----cc----cccC-CCHHHHHHHHHh
Confidence 4455555421122223344333333455666888 9999999999710 00 0111 122345555554
Q ss_pred HHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1216 L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+ +.++++.++||| |...|...+..|+|.+.+|..
T Consensus 259 ~-----~~~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Gal 292 (308)
T PLN02716 259 I-----NGRFETEASGNV-TLDTVHKIGQTGVTYISSGAL 292 (308)
T ss_pred h-----CCCceEEEECCC-CHHHHHHHHHcCCCEEEeCcc
Confidence 2 357889999999 688899999999999998874
No 319
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=85.52 E-value=6.1 Score=45.65 Aligned_cols=76 Identities=20% Similarity=0.107 Sum_probs=58.0
Q ss_pred HHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccc
Q 000265 1172 GVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFG 1251 (1760)
Q Consensus 1172 ~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg 1251 (1760)
.|+++|||+|.. +=|+ ++++|.+....+.++++.+..++.. .. +....+|+..+|..++.+|+|.|-
T Consensus 117 ~Aa~aGa~yisp--yvgR--------i~d~g~dg~~~v~~~~~~~~~~~~~--tk-IlaAS~r~~~~v~~~~~~G~d~vT 183 (213)
T TIGR00875 117 LAAKAGATYVSP--FVGR--------LDDIGGDGMKLIEEVKTIFENHAPD--TE-VIAASVRHPRHVLEAALIGADIAT 183 (213)
T ss_pred HHHHcCCCEEEe--ecch--------HHHcCCCHHHHHHHHHHHHHHcCCC--CE-EEEeccCCHHHHHHHHHcCCCEEE
Confidence 477889887744 2232 4667777788889999998877664 44 455679999999999999999998
Q ss_pred cchhHHHHh
Q 000265 1252 FSTAPLITL 1260 (1760)
Q Consensus 1252 ~GTa~L~Al 1260 (1760)
++-..+-.+
T Consensus 184 ip~~vl~~l 192 (213)
T TIGR00875 184 MPLDVMQQL 192 (213)
T ss_pred cCHHHHHHH
Confidence 887766654
No 320
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=85.25 E-value=2.1 Score=55.18 Aligned_cols=66 Identities=14% Similarity=0.297 Sum_probs=46.4
Q ss_pred CcccccccccccCCCCCCCCCCCCcccccc------ceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCcccc
Q 000265 980 TCNLRGLLKFKEADVKIPLEEVEPASEIVK------RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRM 1052 (1760)
Q Consensus 980 ~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~------Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~ 1052 (1760)
.-|+.++| +.+....+..++|+..|.+.+ |++.|+|.+.+ ...||.|+.++|+....+- +.+++..
T Consensus 21 ~ltfddv~-l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt-----~~~lA~Ama~aGGiGfI~~-~as~E~q 92 (505)
T PLN02274 21 SYTYDDVI-FHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT-----ESDMAIAMAALGGIGIVHY-NNTAEEQ 92 (505)
T ss_pred CCCccceE-ecccccCcCCcccccccccccccCcCCCEeccCCcccc-----hHHHHHHHHhCCCeEEEcC-CCCHHHH
Confidence 45677776 544445566678887766642 99999997655 3469999999999877763 4555544
No 321
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=85.22 E-value=7.2 Score=46.22 Aligned_cols=100 Identities=23% Similarity=0.218 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+.+.+++...+.. +.-+.|-. ..- .-...|.++|+++|=|.+.+=.| . +.-|..+.+...
T Consensus 143 ~~l~el~~~A~~L--Gm~~LVEV---h~~-eEl~rAl~~ga~iIGINnRdL~t----------f----~vdl~~t~~la~ 202 (254)
T COG0134 143 EQLEELVDRAHEL--GMEVLVEV---HNE-EELERALKLGAKIIGINNRDLTT----------L----EVDLETTEKLAP 202 (254)
T ss_pred HHHHHHHHHHHHc--CCeeEEEE---CCH-HHHHHHHhCCCCEEEEeCCCcch----------h----eecHHHHHHHHh
Confidence 4566666666555 44444443 122 33455778999999776653222 0 011122222222
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
. ++..+.+|.-+||.|..|+......||++|-+|+++|-+
T Consensus 203 ~--~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 203 L--IPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred h--CCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcC
Confidence 2 456789999999999999999999999999999998863
No 322
>PRK08227 autoinducer 2 aldolase; Validated
Probab=85.05 E-value=3.8 Score=48.72 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcccc-C-------HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHH
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSEA-G-------VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWEL 1207 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~-G-------vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~ 1207 (1760)
.++++.+++++..+. +.|+++ ..+.. . |...|..+++.|||+|.+. + |. .
T Consensus 125 ~l~~l~~v~~ea~~~--G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~-y-----------------~~-~ 182 (264)
T PRK08227 125 SIKNIIQLVDAGLRY--GMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY-Y-----------------VE-E 182 (264)
T ss_pred HHHHHHHHHHHHHHh--CCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecC-C-----------------CH-H
Confidence 356777777776554 889887 43311 1 2234455899999999862 1 11 3
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCCcCCHH-H----HHHHHHcCCCccccchh
Q 000265 1208 GLAETHQTLVANDLRGRTILQTDGQLKTGR-D----VAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1208 ~Laev~q~L~~~glr~rV~LiadGGIrtG~-D----VaKAlaLGAdaVg~GTa 1255 (1760)
.+.++.+.+ .+||+++||=++.. | +..++..||.+|.+||-
T Consensus 183 ~f~~vv~a~-------~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRN 228 (264)
T PRK08227 183 GFERITAGC-------PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRN 228 (264)
T ss_pred HHHHHHHcC-------CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechh
Confidence 556666642 58999999998632 2 44688899999999985
No 323
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=84.97 E-value=6.8 Score=43.78 Aligned_cols=91 Identities=18% Similarity=0.113 Sum_probs=62.3
Q ss_pred HHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCC
Q 000265 1142 QLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDL 1221 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~gl 1221 (1760)
+.|..+|+..|+.||.+-+......-..+..+.++|||+|++-+..+ | ..+.++.+.++++|
T Consensus 42 ~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~---------------~--~~~~~~i~~~~~~g- 103 (202)
T cd04726 42 EAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP---------------L--STIKKAVKAAKKYG- 103 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC---------------H--HHHHHHHHHHHHcC-
Confidence 56788888777889988332111112446779999999999865421 1 12345556665554
Q ss_pred CCceEEEEc-CCcCCHHHHHHHHHcCCCccccc
Q 000265 1222 RGRTILQTD-GQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1222 r~rV~Liad-GGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
+.++++ =+..|..++.+++.+|+|.+.++
T Consensus 104 ---~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 104 ---KEVQVDLIGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred ---CeEEEEEeCCCCHHHHHHHHHCCCCEEEEc
Confidence 456654 78889999999999999998875
No 324
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=84.87 E-value=3.1 Score=48.76 Aligned_cols=72 Identities=11% Similarity=-0.004 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCCEEEE---ecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000265 1166 VGVIASGVVKGHADHVLI---SGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1166 vg~iA~~aakaGAD~IvI---sG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
...+|....+.|||.+.| +|.-.|. . +-...+.++.+. . +||+++|||||-.|+-+.
T Consensus 32 P~~~A~~~~~~ga~~lhivDLd~a~~g~--~----------~n~~~i~~i~~~-----~---~~v~vGGGIrs~e~~~~~ 91 (241)
T PRK14114 32 PAELVEKLIEEGFTLIHVVDLSKAIENS--V----------ENLPVLEKLSEF-----A---EHIQIGGGIRSLDYAEKL 91 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCcccCC--c----------chHHHHHHHHhh-----c---CcEEEecCCCCHHHHHHH
Confidence 345677778899998765 4432111 0 122344555443 1 589999999999999999
Q ss_pred HHcCCCccccchhHH
Q 000265 1243 ALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1243 laLGAdaVg~GTa~L 1257 (1760)
+.+||+.|-+||.++
T Consensus 92 l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 92 RKLGYRRQIVSSKVL 106 (241)
T ss_pred HHCCCCEEEECchhh
Confidence 999999999999754
No 325
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=84.55 E-value=6.9 Score=47.83 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=77.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCC------------CC--------CCccccHHHHHHHHHHHHHHcCCCCceeEEEeeCCCC
Q 000265 734 AEARDAIKEGYTLLVLSDRAF------------SS--------KRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPR 793 (1760)
Q Consensus 734 ~~a~~av~~G~~iliLsDr~~------------~~--------~~~~ip~lLav~avh~~Li~~~~R~~~~lvvesge~r 793 (1760)
+.|....+.|+..|++|=++- .. ....+|..-++-.+..++ .++.||+ +|-+|
T Consensus 193 ~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~------~~ipIia-sGGIr 265 (326)
T cd02811 193 ETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSAL------PDLPLIA-SGGIR 265 (326)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHc------CCCcEEE-ECCCC
Confidence 556666788999999986411 00 111344444443333321 1678777 89999
Q ss_pred cHHHHHHHHhcCcccc---cHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhccc
Q 000265 794 EVHHFCTLVGFGADAI---CPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYK 869 (1760)
Q Consensus 794 e~Hh~a~L~GyGA~av---~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~ 869 (1760)
+-.+++-.|-.|||+| -|+|. .+ + ...+.+.+|++.+...|-.+|.-+|.++++..+
T Consensus 266 ~~~dv~kal~lGAd~V~i~~~~L~-----~~-----~---------~g~~~~~~~i~~~~~el~~~m~~~G~~si~el~ 325 (326)
T cd02811 266 NGLDIAKALALGADLVGMAGPFLK-----AA-----L---------EGEEAVIETIEQIIEELRTAMFLTGAKNLAELK 325 (326)
T ss_pred CHHHHHHHHHhCCCEEEEcHHHHH-----HH-----h---------cCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhc
Confidence 9999999999999999 34432 11 1 145778899999999999999999999988643
No 326
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=84.31 E-value=2.9 Score=48.28 Aligned_cols=69 Identities=16% Similarity=0.008 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCEEEE---ecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000265 1167 GVIASGVVKGHADHVLI---SGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvI---sG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
..+|....+.|||-+.| +|..|.. +-...+.++.+. +||+++|||||-.|+.+.+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~~~~~-------------~n~~~i~~i~~~---------~~v~vgGGirs~e~~~~~~ 96 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRIVGLG-------------DNFSLLSKLSKR---------VELIADCGVRSPEDLETLP 96 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccccCCc-------------chHHHHHHHHhh---------CcEEEcCccCCHHHHHHHH
Confidence 35667777889998765 4543221 123344444442 5899999999999999886
Q ss_pred H--cCCCccccchhHH
Q 000265 1244 L--LGAEEFGFSTAPL 1257 (1760)
Q Consensus 1244 a--LGAdaVg~GTa~L 1257 (1760)
. .||+.|-+||.++
T Consensus 97 ~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 97 FTLEFASRVVVATETL 112 (221)
T ss_pred hhhccceEEeecChhh
Confidence 5 3799999999765
No 327
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=84.16 E-value=4.2 Score=46.74 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=47.5
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCC
Q 000265 1169 IASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1169 iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAd 1248 (1760)
.|..+...|++.|.+.-.+|-. . . .+ ...+.++.+.+ ++||++.||||+..++.+++..|||
T Consensus 139 ~a~aa~~~G~~~i~Le~~sGa~---~------~-v~-~e~i~~Vk~~~-------~~Pv~vGGGIrs~e~a~~l~~~GAD 200 (205)
T TIGR01769 139 YCLAAKYFGMKWVYLEAGSGAS---Y------P-VN-PETISLVKKAS-------GIPLIVGGGIRSPEIAYEIVLAGAD 200 (205)
T ss_pred HHHHHHHcCCCEEEEEcCCCCC---C------C-CC-HHHHHHHHHhh-------CCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 4555778999999885433321 0 0 11 23455555542 5899999999999999999999999
Q ss_pred ccccc
Q 000265 1249 EFGFS 1253 (1760)
Q Consensus 1249 aVg~G 1253 (1760)
.|-+|
T Consensus 201 ~VVVG 205 (205)
T TIGR01769 201 AIVTG 205 (205)
T ss_pred EEEeC
Confidence 98776
No 328
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=83.90 E-value=7.9 Score=41.51 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcC-C----HHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLK-T----GRDV 1239 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIr-t----G~DV 1239 (1760)
-...++..|.+.+||+|-+|..-+.+ ...+.++.+.|++.|+++ ++|++-|.+- - ..+.
T Consensus 38 ~~e~~v~aa~~~~adiVglS~L~t~~---------------~~~~~~~~~~l~~~gl~~-v~vivGG~~~i~~~d~~~~~ 101 (128)
T cd02072 38 PQEEFIDAAIETDADAILVSSLYGHG---------------EIDCKGLREKCDEAGLKD-ILLYVGGNLVVGKQDFEDVE 101 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccCC---------------HHHHHHHHHHHHHCCCCC-CeEEEECCCCCChhhhHHHH
Confidence 44577888999999999999875543 346678888999999976 9898888875 3 3344
Q ss_pred HHHHHcCCCcc
Q 000265 1240 AIAALLGAEEF 1250 (1760)
Q Consensus 1240 aKAlaLGAdaV 1250 (1760)
.+..+||.++|
T Consensus 102 ~~L~~~Gv~~v 112 (128)
T cd02072 102 KRFKEMGFDRV 112 (128)
T ss_pred HHHHHcCCCEE
Confidence 67888999875
No 329
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=83.81 E-value=2.9 Score=51.51 Aligned_cols=75 Identities=13% Similarity=-0.017 Sum_probs=49.4
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCc
Q 000265 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEE 1249 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAda 1249 (1760)
+..+.+.|||+|.++-. .-|..-+. ....| ...+..+.+. -.+|++|-||| +..++...+.+||++
T Consensus 253 ~~~A~~~GaDYI~lGPv-f~T~tKp~--~~~~G---le~l~~~~~~-------~~iPv~AiGGI-~~~ni~~l~~~Ga~g 318 (347)
T PRK02615 253 MAKAIAEGADYIGVGPV-FPTPTKPG--KAPAG---LEYLKYAAKE-------APIPWFAIGGI-DKSNIPEVLQAGAKR 318 (347)
T ss_pred HHHHHHcCCCEEEECCC-cCCCCCCC--CCCCC---HHHHHHHHHh-------CCCCEEEECCC-CHHHHHHHHHcCCcE
Confidence 45577899999988432 32321111 11122 2334333332 25899999999 588999999999999
Q ss_pred cccchhHHH
Q 000265 1250 FGFSTAPLI 1258 (1760)
Q Consensus 1250 Vg~GTa~L~ 1258 (1760)
|.++++++-
T Consensus 319 VAvisaI~~ 327 (347)
T PRK02615 319 VAVVRAIMG 327 (347)
T ss_pred EEEeHHHhC
Confidence 999998763
No 330
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=83.63 E-value=1.3 Score=51.01 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1202 GLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1202 GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
+.|. ..|.++++. | |--|.-+++|||.|+.|.+-++.||||+|-+|+..+-
T Consensus 192 ~~p~-elv~~~~~~----g-rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 192 QAPY-ELVKEVAKL----G-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred CChH-HHHHHHHHh----C-CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence 3453 345555543 2 2347778999999999999999999999999987554
No 331
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=83.49 E-value=9 Score=47.70 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=42.9
Q ss_pred HHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCc--c
Q 000265 1173 VVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEE--F 1250 (1760)
Q Consensus 1173 aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAda--V 1250 (1760)
++++|+|+|++|-..|-. +- .+.-+.-+.+..+ +++| ..|-+-|...+...++.|||+ |
T Consensus 259 l~~aGvdvviLDSSqGnS-------~~-----qiemik~iK~~yP------~l~V-iaGNVVT~~qa~nLI~aGaDgLrV 319 (503)
T KOG2550|consen 259 LVQAGVDVVILDSSQGNS-------IY-----QLEMIKYIKETYP------DLQI-IAGNVVTKEQAANLIAAGADGLRV 319 (503)
T ss_pred hhhcCCcEEEEecCCCcc-------hh-----HHHHHHHHHhhCC------Ccee-eccceeeHHHHHHHHHccCceeEe
Confidence 789999999999875532 11 1222333333322 3444 468888999999999999995 6
Q ss_pred ccchh
Q 000265 1251 GFSTA 1255 (1760)
Q Consensus 1251 g~GTa 1255 (1760)
|||+.
T Consensus 320 GMGsG 324 (503)
T KOG2550|consen 320 GMGSG 324 (503)
T ss_pred ccccC
Confidence 66664
No 332
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=83.31 E-value=7.4 Score=48.78 Aligned_cols=107 Identities=22% Similarity=0.243 Sum_probs=65.3
Q ss_pred HHHHHHHHhCCCCceEEEEccccCHHHH-HHHHHHcCCCEEEEecCCCC-C-----------CC----------Cccccc
Q 000265 1142 QLIYDLKNANPGARISVKLVSEAGVGVI-ASGVVKGHADHVLISGHDGG-T-----------GA----------SRWTGI 1198 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvIsG~~GG-T-----------Ga----------s~~~si 1198 (1760)
+.|.+||+..|+.+|.+-+-- ..++.. +..+.++|||.++|.+..+- + |. .+...+
T Consensus 215 ~iVk~Lr~~~~~~~I~~DLK~-~Di~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i 293 (391)
T PRK13307 215 EVISKIREVRPDAFIVADLKT-LDTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLL 293 (391)
T ss_pred HHHHHHHHhCCCCeEEEEecc-cChhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHH
Confidence 468888887677787765532 244433 66789999999999764221 0 00 010000
Q ss_pred c-----------cc-----CC-CHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhH
Q 000265 1199 K-----------NA-----GL-PWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1199 ~-----------~~-----Gl-P~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~ 1256 (1760)
+ +. +. |...-+.++ ++. ..+++|.++|||. ..++..++.+|||.+-+|++.
T Consensus 294 ~~l~~~vD~Vllht~vdp~~~~~~~~kI~~i----kk~--~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaI 361 (391)
T PRK13307 294 ESLKVKPDVVELHRGIDEEGTEHAWGNIKEI----KKA--GGKILVAVAGGVR-VENVEEALKAGADILVVGRAI 361 (391)
T ss_pred HHhhCCCCEEEEccccCCCcccchHHHHHHH----HHh--CCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHH
Confidence 0 11 10 111122222 221 2358899999998 778889999999999999973
No 333
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=83.13 E-value=4.1 Score=47.78 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCEEEE---ecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1168 VIASGVVKGHADHVLI---SGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvI---sG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
..|..-.+.||..+.+ +|.-.|.. --..++.++.+.+ .++|++-|||||-.++...+.
T Consensus 35 ~~a~~~~~~Ga~~lHlVDLdgA~~g~~------------~n~~~i~~i~~~~-------~~~vQvGGGIRs~~~v~~ll~ 95 (241)
T COG0106 35 EVAKKWSDQGAEWLHLVDLDGAKAGGP------------RNLEAIKEILEAT-------DVPVQVGGGIRSLEDVEALLD 95 (241)
T ss_pred HHHHHHHHcCCcEEEEeeccccccCCc------------ccHHHHHHHHHhC-------CCCEEeeCCcCCHHHHHHHHH
Confidence 4566677888888754 66543321 1134566666653 589999999999999999999
Q ss_pred cCCCccccchhH
Q 000265 1245 LGAEEFGFSTAP 1256 (1760)
Q Consensus 1245 LGAdaVg~GTa~ 1256 (1760)
+|++.|-+||.+
T Consensus 96 ~G~~rViiGt~a 107 (241)
T COG0106 96 AGVARVIIGTAA 107 (241)
T ss_pred CCCCEEEEecce
Confidence 999999999975
No 334
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=82.92 E-value=0.92 Score=52.60 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=32.5
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
++|||++||+++..|+.++..+|+++|-+|+++..
T Consensus 182 ~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~ 216 (228)
T PRK04128 182 DEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYE 216 (228)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhc
Confidence 58999999999999999999999999999998643
No 335
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=82.58 E-value=5.4 Score=47.36 Aligned_cols=74 Identities=22% Similarity=0.162 Sum_probs=49.9
Q ss_pred cCHHHHHHHHHHc-CCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000265 1164 AGVGVIASGVVKG-HADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1164 ~Gvg~iA~~aaka-GAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
..+...|..+... ++|+|+|+|.. ||.++ .| .-|.++.+.. ..+|+++.||+ |...|..+
T Consensus 157 ~~~~e~a~~~~~~~~aDavivtG~~--TG~~~---------d~-~~l~~vr~~~------~~~PvllggGv-t~eNv~e~ 217 (257)
T TIGR00259 157 RDLESIALDTVERGLADAVILSGKT--TGTEV---------DL-ELLKLAKETV------KDTPVLAGSGV-NLENVEEL 217 (257)
T ss_pred CCHHHHHHHHHHhcCCCEEEECcCC--CCCCC---------CH-HHHHHHHhcc------CCCeEEEECCC-CHHHHHHH
Confidence 3455666665554 49999999973 33321 12 2344443321 25799999998 78889988
Q ss_pred HHcCCCccccchhHH
Q 000265 1243 ALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1243 laLGAdaVg~GTa~L 1257 (1760)
+.. ||+|-+||.+-
T Consensus 218 l~~-adGviVgS~~K 231 (257)
T TIGR00259 218 LSI-ADGVIVATTIK 231 (257)
T ss_pred Hhh-CCEEEECCCcc
Confidence 887 99999999754
No 336
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=82.43 E-value=5.6 Score=51.30 Aligned_cols=66 Identities=11% Similarity=0.190 Sum_probs=47.6
Q ss_pred CcccccccccccCCCCCCCCCCCCcccccc------ceEecCCCcccCcHHHHHHHHHHHHHcCCceeccCCCCCcccc
Q 000265 980 TCNLRGLLKFKEADVKIPLEEVEPASEIVK------RFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRM 1052 (1760)
Q Consensus 980 ~~~~r~ll~~~~~~~~i~~~eVe~~t~i~~------Pf~i~aMS~Gsls~ea~~aLA~Aa~~~G~~s~sGeGge~~e~~ 1052 (1760)
.-|+.++| +-+....+..++|+..+.+.+ |++.++|..-+ +..||.||++.|+..... +.+++|+.
T Consensus 17 ~lt~ddv~-l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt-----~~~ma~a~a~~GglGvi~-~~~~~e~~ 88 (495)
T PTZ00314 17 GLTYDDVI-LLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVT-----EHKMAIAMALMGGIGVIH-NNCSIEEQ 88 (495)
T ss_pred CCCccceE-ecccccccccccccccccccCCcccCCceeecCccccc-----cHHHHHHHHHCCCeEEec-CCCCHHHH
Confidence 45677777 544445666678887776543 99999998533 346999999999998885 45677764
No 337
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=82.01 E-value=15 Score=43.10 Aligned_cols=105 Identities=13% Similarity=0.042 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEe-cCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
++...|..+|+.+-....++-+-+.+.+..+..-+. -+|.|+|= -..|.+|... +. ....=+.++++.+.
T Consensus 104 ~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~--~vD~VLiMtV~PGfgGQ~f---~~----~~l~KI~~lr~~~~ 174 (228)
T PRK08091 104 DLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLD--QIDLIQILTLDPRTGTKAP---SD----LILDRVIQVENRLG 174 (228)
T ss_pred cHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHh--hcCEEEEEEECCCCCCccc---cH----HHHHHHHHHHHHHH
Confidence 466778888887321266777766666666543333 38998773 2223222221 11 12334555666666
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
++++ ++.|.+||||. ..-+.+....|||.+-.|++
T Consensus 175 ~~~~--~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 175 NRRV--EKLISIDGSMT-LELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred hcCC--CceEEEECCCC-HHHHHHHHHCCCCEEEEChh
Confidence 6554 57899999997 55777889999999999987
No 338
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=81.52 E-value=5.4 Score=46.46 Aligned_cols=71 Identities=18% Similarity=0.071 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000265 1168 VIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
..|+.+.+.||-=|.+.-.+. ||. .|.- +..+..+... .+|||||+||.-+..+.+.++..|
T Consensus 159 ~Wa~~~e~~GAGEIlLtsmD~DGtk---------~GyD-l~l~~~v~~~-------v~iPvIASGGaG~~ehf~eaf~~~ 221 (256)
T COG0107 159 EWAKEVEELGAGEILLTSMDRDGTK---------AGYD-LELTRAVREA-------VNIPVIASGGAGKPEHFVEAFTEG 221 (256)
T ss_pred HHHHHHHHcCCceEEEeeecccccc---------cCcC-HHHHHHHHHh-------CCCCEEecCCCCcHHHHHHHHHhc
Confidence 456678888998888865433 221 1211 2234444444 269999999999999999999999
Q ss_pred -CCccccchh
Q 000265 1247 -AEEFGFSTA 1255 (1760)
Q Consensus 1247 -AdaVg~GTa 1255 (1760)
||++--++.
T Consensus 222 ~adAaLAAsi 231 (256)
T COG0107 222 KADAALAASI 231 (256)
T ss_pred CccHHHhhhh
Confidence 998754443
No 339
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=81.36 E-value=11 Score=46.31 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHc-CCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKG-HADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQT 1215 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aaka-GAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~ 1215 (1760)
.++|..++...+.. +.-+.|-. ..-.. ...+.++ |+++|=|.+.+=.|= .+- |..+.+.
T Consensus 216 ~~~L~~l~~~A~~L--Gme~LVEV---H~~~E-lerAl~~~ga~iIGINNRdL~Tf--------~vD------l~~t~~L 275 (338)
T PLN02460 216 DLDIKYMLKICKSL--GMAALIEV---HDERE-MDRVLGIEGVELIGINNRSLETF--------EVD------ISNTKKL 275 (338)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEe---CCHHH-HHHHHhcCCCCEEEEeCCCCCcc--------eEC------HHHHHHH
Confidence 45677777766665 44454443 12222 3447777 999998877643330 111 1222222
Q ss_pred HHhC---CC-CCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000265 1216 LVAN---DL-RGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1216 L~~~---gl-r~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
+... -+ ...+.+++-+||.|..|+.....+||++|-+|+++|-+
T Consensus 276 ~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 276 LEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred hhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 2200 12 14578999999999999999999999999999998863
No 340
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=81.16 E-value=1.8 Score=49.20 Aligned_cols=72 Identities=14% Similarity=-0.028 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
....+|....++||++|.|---++-.+.+ + .-+..+.+. .++||+.-|+|++..++-.++.
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~~~g~----------~--~~~~~i~~~-------v~iPi~~~~~i~~~~~v~~~~~ 92 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKYFQGS----------L--EDLRAVREA-------VSLPVLRKDFIIDPYQIYEARA 92 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCccccCCC----------H--HHHHHHHHh-------cCCCEEECCeecCHHHHHHHHH
Confidence 35678889999999999885443332221 1 223333332 1589999999999999999999
Q ss_pred cCCCccccchh
Q 000265 1245 LGAEEFGFSTA 1255 (1760)
Q Consensus 1245 LGAdaVg~GTa 1255 (1760)
+|||+|-+++.
T Consensus 93 ~Gad~v~l~~~ 103 (217)
T cd00331 93 AGADAVLLIVA 103 (217)
T ss_pred cCCCEEEEeec
Confidence 99999988875
No 341
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.99 E-value=2.1 Score=48.25 Aligned_cols=67 Identities=18% Similarity=0.107 Sum_probs=47.8
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCc
Q 000265 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEE 1249 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAda 1249 (1760)
+..+.+.|||+|-+ +...+ ..|+ ..|..+...+ ..+|+++.||| |..++...+..||++
T Consensus 118 ~~~A~~~Gadyv~~--Fpt~~---------~~G~---~~l~~~~~~~------~~ipvvaiGGI-~~~n~~~~l~aGa~~ 176 (187)
T PRK07455 118 IVTAWQAGASCVKV--FPVQA---------VGGA---DYIKSLQGPL------GHIPLIPTGGV-TLENAQAFIQAGAIA 176 (187)
T ss_pred HHHHHHCCCCEEEE--CcCCc---------ccCH---HHHHHHHhhC------CCCcEEEeCCC-CHHHHHHHHHCCCeE
Confidence 45678899999988 43211 1122 3344444332 25899999999 789999999999999
Q ss_pred cccchhHH
Q 000265 1250 FGFSTAPL 1257 (1760)
Q Consensus 1250 Vg~GTa~L 1257 (1760)
|+++++.+
T Consensus 177 vav~s~i~ 184 (187)
T PRK07455 177 VGLSGQLF 184 (187)
T ss_pred EEEehhcc
Confidence 99998753
No 342
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=80.81 E-value=3.9 Score=47.32 Aligned_cols=73 Identities=12% Similarity=-0.079 Sum_probs=49.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCH-HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCC
Q 000265 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPW-ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~-~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAd 1248 (1760)
+..+.+.|||+|.++-.- |. + |....|. ...+.++.+. -++||++-||| |..++..++..||+
T Consensus 124 a~~A~~~gaDYv~~Gpv~--t~-t-----K~~~~p~gl~~l~~~~~~-------~~iPvvAIGGI-~~~n~~~~~~~GA~ 187 (221)
T PRK06512 124 AMEIGELRPDYLFFGKLG--AD-N-----KPEAHPRNLSLAEWWAEM-------IEIPCIVQAGS-DLASAVEVAETGAE 187 (221)
T ss_pred HHHhhhcCCCEEEECCCC--CC-C-----CCCCCCCChHHHHHHHHh-------CCCCEEEEeCC-CHHHHHHHHHhCCC
Confidence 445678999999995442 21 1 1112221 1233333332 25999999999 99999999999999
Q ss_pred ccccchhHHH
Q 000265 1249 EFGFSTAPLI 1258 (1760)
Q Consensus 1249 aVg~GTa~L~ 1258 (1760)
+|.+-++++-
T Consensus 188 giAvisai~~ 197 (221)
T PRK06512 188 FVALERAVFD 197 (221)
T ss_pred EEEEhHHhhC
Confidence 9998887663
No 343
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=80.76 E-value=18 Score=42.05 Aligned_cols=75 Identities=16% Similarity=0.059 Sum_probs=52.9
Q ss_pred HHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCcccc
Q 000265 1173 VVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGF 1252 (1760)
Q Consensus 1173 aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~ 1252 (1760)
++++||++|-. +=|+ +++.|......+.++++.++..+. +. -+....+|+..+|..++.+||+.+=+
T Consensus 120 Aa~aGa~yIsp--yvgR--------~~~~g~dg~~~i~~i~~~~~~~~~--~t-kILaAS~r~~~~v~~~~~~G~d~vTi 186 (220)
T PRK12653 120 SALAGAEYVAP--YVNR--------IDAQGGSGIQTVTDLQQLLKMHAP--QA-KVLAASFKTPRQALDCLLAGCESITL 186 (220)
T ss_pred HHhcCCcEEEe--ecCh--------HhhcCCChHHHHHHHHHHHHhcCC--Cc-EEEEEecCCHHHHHHHHHcCCCEEEC
Confidence 66788888744 2122 344555556677888888766554 33 34455799999999999999999988
Q ss_pred chhHHHHh
Q 000265 1253 STAPLITL 1260 (1760)
Q Consensus 1253 GTa~L~Al 1260 (1760)
.-..+-.+
T Consensus 187 p~~vl~~l 194 (220)
T PRK12653 187 PLDVAQQM 194 (220)
T ss_pred CHHHHHHH
Confidence 87777655
No 344
>PRK01362 putative translaldolase; Provisional
Probab=80.48 E-value=13 Score=42.99 Aligned_cols=76 Identities=16% Similarity=0.046 Sum_probs=57.8
Q ss_pred HHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccc
Q 000265 1172 GVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFG 1251 (1760)
Q Consensus 1172 ~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg 1251 (1760)
.|+++||++|.. +=|+ ++++|.+....+.++++.+..++.. +-+....+|+..+|..++.+|||.+-
T Consensus 117 ~Aa~aGa~yisp--yvgR--------i~d~g~dg~~~i~~~~~~~~~~~~~---tkilaAS~r~~~~v~~~~~~G~d~iT 183 (214)
T PRK01362 117 LAAKAGATYVSP--FVGR--------LDDIGTDGMELIEDIREIYDNYGFD---TEIIAASVRHPMHVLEAALAGADIAT 183 (214)
T ss_pred HHHhcCCcEEEe--ecch--------HhhcCCCHHHHHHHHHHHHHHcCCC---cEEEEeecCCHHHHHHHHHcCCCEEe
Confidence 377889987744 2232 4667778888899999998877653 34455679999999999999999998
Q ss_pred cchhHHHHh
Q 000265 1252 FSTAPLITL 1260 (1760)
Q Consensus 1252 ~GTa~L~Al 1260 (1760)
++-..+-.+
T Consensus 184 i~~~vl~~l 192 (214)
T PRK01362 184 IPYKVIKQL 192 (214)
T ss_pred cCHHHHHHH
Confidence 887766654
No 345
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=80.27 E-value=9.6 Score=45.24 Aligned_cols=101 Identities=18% Similarity=0.129 Sum_probs=66.8
Q ss_pred HHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcC-CCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000265 1142 QLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGH-ADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaG-AD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
+.+..+|+..|. +...|.-.+...-.-+..++++| +|+|.+|..+-.. +-|.. .+.+..+.+...+
T Consensus 170 ~a~~~~~~~~~~-~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~~-----------~~~~~-~~~~~~~~~~~~~ 236 (281)
T cd00516 170 AAVKALRRWLPE-LFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEE-----------LDPAV-LILKARAHLDGKG 236 (281)
T ss_pred HHHHHHHHhCCC-CceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChHH-----------HHHHH-HHHHHHHhhhhcC
Confidence 567778887665 45555544332233445688899 9999998763211 11222 2233444444333
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
. .++.|+++|||- ...|......|.|.+++|+...
T Consensus 237 ~-~~~~i~~Sggi~-~~~i~~~~~~gvd~~gvG~~~~ 271 (281)
T cd00516 237 L-PRVKIEASGGLD-EENIRAYAETGVDVFGVGTLLH 271 (281)
T ss_pred C-CceEEEEeCCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 3 478999999996 9999999999999999998644
No 346
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=80.09 E-value=4.5 Score=48.10 Aligned_cols=71 Identities=10% Similarity=-0.033 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000265 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
...|..-.+.||+.|.|---+||.. . . ...+.++.+ + .++|.+-||||+ .++-+.+.+|
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdgg~~-------~----n-~~~i~~i~~-~-------~~~vqvGGGIR~-e~i~~~l~~G 104 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGADDA-------S----L-AAALEALRA-Y-------PGGLQVGGGVNS-ENAMSYLDAG 104 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCc-------c----c-HHHHHHHHh-C-------CCCEEEeCCccH-HHHHHHHHcC
Confidence 4577778889998876533333221 1 1 234444444 1 389999999997 9999999999
Q ss_pred CCccccchhHHH
Q 000265 1247 AEEFGFSTAPLI 1258 (1760)
Q Consensus 1247 AdaVg~GTa~L~ 1258 (1760)
|+.|-+||.++-
T Consensus 105 a~rViigT~Av~ 116 (262)
T PLN02446 105 ASHVIVTSYVFR 116 (262)
T ss_pred CCEEEEchHHHh
Confidence 999999997654
No 347
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.96 E-value=6.9 Score=44.90 Aligned_cols=80 Identities=13% Similarity=0.025 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhC
Q 000265 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAN 1219 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~ 1219 (1760)
..+.|+.|++.+|++-|.+-.|-+. ..+..+.++||++|+--+. -+++.+++.++
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~---e~a~~ai~aGA~FivSP~~----------------------~~~vi~~a~~~ 96 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNA---KQFEDAAKAGSRFIVSPGT----------------------TQELLAAANDS 96 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCH---HHHHHHHHcCCCEEECCCC----------------------CHHHHHHHHHc
Confidence 4567888988888766666554332 3567799999999964332 13444444443
Q ss_pred CCCCceEEEEcCCcCCHHHHHHHHHcCCCcc
Q 000265 1220 DLRGRTILQTDGQLKTGRDVAIAALLGAEEF 1250 (1760)
Q Consensus 1220 glr~rV~LiadGGIrtG~DVaKAlaLGAdaV 1250 (1760)
+ +..-=|..|+.+|..|+.+||+.|
T Consensus 97 ~------i~~iPG~~TptEi~~A~~~Ga~~v 121 (201)
T PRK06015 97 D------VPLLPGAATPSEVMALREEGYTVL 121 (201)
T ss_pred C------CCEeCCCCCHHHHHHHHHCCCCEE
Confidence 3 345568999999999999999965
No 348
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=78.76 E-value=21 Score=41.63 Aligned_cols=103 Identities=22% Similarity=0.245 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEec-CCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISG-HDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG-~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
++...|..+|+. +...+|-+-+.+.+..+.. ..+ -+|.|+|=. ..|.+|..- +. ....=+.++.+.+.
T Consensus 98 ~~~~~l~~Ir~~--g~k~GlalnP~T~~~~i~~-~l~-~vD~VlvMtV~PGf~GQ~f---i~----~~l~KI~~l~~~~~ 166 (223)
T PRK08745 98 HVHRTIQLIKSH--GCQAGLVLNPATPVDILDW-VLP-ELDLVLVMSVNPGFGGQAF---IP----SALDKLRAIRKKID 166 (223)
T ss_pred cHHHHHHHHHHC--CCceeEEeCCCCCHHHHHH-HHh-hcCEEEEEEECCCCCCccc---cH----HHHHHHHHHHHHHH
Confidence 356678888887 5667777766655655543 222 579887732 223222211 11 12334555666655
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
++++ ++.|.+||||. ...+.+....|||.+-+|++
T Consensus 167 ~~~~--~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 167 ALGK--PIRLEIDGGVK-ADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred hcCC--CeeEEEECCCC-HHHHHHHHHcCCCEEEEChh
Confidence 5543 48899999996 56788889999999999987
No 349
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=78.70 E-value=8.1 Score=45.02 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=46.1
Q ss_pred cCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1176 GHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1176 aGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
.|-.+|-+...+|-.. ..|. ..+..+.+.+ +.++|+..||||+..++-.++.+|||.|-+||.
T Consensus 148 ~g~~~vYlE~gs~~g~----------~v~~-e~i~~v~~~~------~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~ 210 (223)
T TIGR01768 148 LGMPIIYLEAGSGAPE----------PVPP-ELVAEVKKVL------DKARLFVGGGIRSVEKAREMAEAGADTIVTGNV 210 (223)
T ss_pred cCCcEEEEEecCCCCC----------CcCH-HHHHHHHHHc------CCCCEEEecCCCCHHHHHHHHHcCCCEEEECcH
Confidence 6888888864322110 1232 2344444432 248999999999999999999999999999997
Q ss_pred HH
Q 000265 1256 PL 1257 (1760)
Q Consensus 1256 ~L 1257 (1760)
+.
T Consensus 211 ~~ 212 (223)
T TIGR01768 211 IE 212 (223)
T ss_pred Hh
Confidence 55
No 350
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=78.12 E-value=13 Score=45.69 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEEEEccccCHH----HHHHHHHH--cCCCEEEEecCCCCCCCCccccccccCCCH
Q 000265 1132 HDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVG----VIASGVVK--GHADHVLISGHDGGTGASRWTGIKNAGLPW 1205 (1760)
Q Consensus 1132 hDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg----~iA~~aak--aGAD~IvIsG~~GGTGas~~~si~~~GlP~ 1205 (1760)
|-.|++|++++++...+... ...+.|= +|+. ..+..+.+ +|+|+|+||-..|-. . -.
T Consensus 76 Hk~~~~e~~~~fv~~~~~~~-~~~~~va----vG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs-------~-----~~ 138 (346)
T PRK05096 76 HKHYSVEEWAAFVNNSSADV-LKHVMVS----TGTSDADFEKTKQILALSPALNFICIDVANGYS-------E-----HF 138 (346)
T ss_pred ecCCCHHHHHHHHHhccccc-cceEEEE----ecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcH-------H-----HH
Confidence 44578999999888776431 2233331 2332 23345666 599999998764421 0 01
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000265 1206 ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1206 ~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
+..+..+.+.+ .+++ +..|-+.|+..+...+..|||+|=+|
T Consensus 139 i~~ik~ik~~~------P~~~-vIaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 139 VQFVAKAREAW------PDKT-ICAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHHHhC------CCCc-EEEecccCHHHHHHHHHcCCCEEEEc
Confidence 22333333332 2344 67899999999999999999975433
No 351
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=77.43 E-value=12 Score=45.77 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHH--HHHHHHHHcC--CCEEEEecCCCCCCCCccccccccCCCHHHHHH
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVG--VIASGVVKGH--ADHVLISGHDGGTGASRWTGIKNAGLPWELGLA 1210 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg--~iA~~aakaG--AD~IvIsG~~GGTGas~~~si~~~GlP~~~~La 1210 (1760)
+++|++..++ |+.+++. +.+=........ ..+..+.++| +|+|++|-..|-+ . .....+.
T Consensus 66 ~~~E~~~sfv---rk~k~~~-L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s-------~-----~~~~~i~ 129 (321)
T TIGR01306 66 FDEESRIPFI---KDMQERG-LFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHS-------N-----SVINMIK 129 (321)
T ss_pred CCHHHHHHHH---Hhccccc-cEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCch-------H-----HHHHHHH
Confidence 3688887764 4444332 222221111111 2334578888 7999998754421 0 1222333
Q ss_pred HHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000265 1211 ETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1211 ev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
.+.+.. ..+++..|.+.|..++..++..|||+|-+|
T Consensus 130 ~i~~~~-------p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 130 HIKTHL-------PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHhC-------CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 333321 357889999999999999999999997655
No 352
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=76.39 E-value=27 Score=40.69 Aligned_cols=75 Identities=13% Similarity=0.030 Sum_probs=53.1
Q ss_pred HHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCcccc
Q 000265 1173 VVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGF 1252 (1760)
Q Consensus 1173 aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~ 1252 (1760)
++++||++|-. +=|+ +++.|......+.++++.+...+.. .. +....+|+..+|..++.+||+.+-+
T Consensus 120 Aa~aGa~yIsp--yvgR--------~~~~g~dg~~~i~~~~~~~~~~~~~--tk-ILaAS~r~~~~v~~~~~~G~d~vTi 186 (220)
T PRK12655 120 AALAGAKYVAP--YVNR--------VDAQGGDGIRMVQELQTLLEMHAPE--SM-VLAASFKTPRQALDCLLAGCQSITL 186 (220)
T ss_pred HHHcCCeEEEe--ecch--------HhHcCCCHHHHHHHHHHHHHhcCCC--cE-EEEEecCCHHHHHHHHHcCCCEEEC
Confidence 66788887643 2122 3445555667788888888776553 33 3455699999999999999999987
Q ss_pred chhHHHHh
Q 000265 1253 STAPLITL 1260 (1760)
Q Consensus 1253 GTa~L~Al 1260 (1760)
.-..+-.+
T Consensus 187 p~~vl~~l 194 (220)
T PRK12655 187 PLDVAQQM 194 (220)
T ss_pred CHHHHHHH
Confidence 77766654
No 353
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.38 E-value=11 Score=43.64 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhC
Q 000265 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAN 1219 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~ 1219 (1760)
..+.|+.|++.+|++.|.+-.+... ..+..+.++|||+|+.-|.+ +++.+.+.+.
T Consensus 53 ~~~~I~~l~~~~p~~~IGAGTVl~~---~~a~~a~~aGA~FivsP~~~----------------------~~vi~~a~~~ 107 (212)
T PRK05718 53 ALEAIRLIAKEVPEALIGAGTVLNP---EQLAQAIEAGAQFIVSPGLT----------------------PPLLKAAQEG 107 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCH---HHHHHHHHcCCCEEECCCCC----------------------HHHHHHHHHc
Confidence 5567889998888877766655332 45677999999999875541 1233333332
Q ss_pred CCCCceEEEEcCCcCCHHHHHHHHHcCCCcccc
Q 000265 1220 DLRGRTILQTDGQLKTGRDVAIAALLGAEEFGF 1252 (1760)
Q Consensus 1220 glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~ 1252 (1760)
+ +-.-=|+.|+.++..|..+||+.|-+
T Consensus 108 ~------i~~iPG~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 108 P------IPLIPGVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred C------CCEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 2 33445889999999999999998765
No 354
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.21 E-value=4.8 Score=46.44 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCC
Q 000265 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGA 1247 (1760)
+-+..+.++|+|+|.+ +.+. ..|+. .|..+... -..+++++.|||. ..++...+..||
T Consensus 120 ~E~~~A~~~Gad~vkl--FPa~----------~~G~~---~ik~l~~~------~p~ip~~atGGI~-~~N~~~~l~aGa 177 (213)
T PRK06552 120 TEIVTALEAGSEIVKL--FPGS----------TLGPS---FIKAIKGP------LPQVNVMVTGGVN-LDNVKDWFAAGA 177 (213)
T ss_pred HHHHHHHHcCCCEEEE--CCcc----------cCCHH---HHHHHhhh------CCCCEEEEECCCC-HHHHHHHHHCCC
Confidence 3446688999999998 2211 13322 22222222 2359999999996 799999999999
Q ss_pred CccccchhHH
Q 000265 1248 EEFGFSTAPL 1257 (1760)
Q Consensus 1248 daVg~GTa~L 1257 (1760)
++|++|+..+
T Consensus 178 ~~vavgs~l~ 187 (213)
T PRK06552 178 DAVGIGGELN 187 (213)
T ss_pred cEEEEchHHh
Confidence 9999999864
No 355
>PRK14057 epimerase; Provisional
Probab=76.03 E-value=22 Score=42.26 Aligned_cols=106 Identities=14% Similarity=0.083 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhCCC-------CceEEEEccccCHHHHHHHHHHcCCCEEEEecC-CCCCCCCccccccccCCCHHHHHH
Q 000265 1139 DLAQLIYDLKNANPG-------ARISVKLVSEAGVGVIASGVVKGHADHVLISGH-DGGTGASRWTGIKNAGLPWELGLA 1210 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~-------~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~-~GGTGas~~~si~~~GlP~~~~La 1210 (1760)
++...|..+|+..-+ ...+|-+-+.+.+..+..-+ + -+|.|.|=.. .|-+|..- +. ....=+.
T Consensus 111 ~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l-~-~vD~VLvMtV~PGfgGQ~F---i~----~~l~KI~ 181 (254)
T PRK14057 111 HLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPIL-S-DVEVIQLLAVNPGYGSKMR---SS----DLHERVA 181 (254)
T ss_pred CHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHH-H-hCCEEEEEEECCCCCchhc---cH----HHHHHHH
Confidence 356677888876311 24566666665666554333 3 3899877322 22222211 11 1223345
Q ss_pred HHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhH
Q 000265 1211 ETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1211 ev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~ 1256 (1760)
++++.+.++++ ++.|.+||||... -+......|||.+-.|++.
T Consensus 182 ~lr~~~~~~~~--~~~IeVDGGI~~~-ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 182 QLLCLLGDKRE--GKIIVIDGSLTQD-QLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred HHHHHHHhcCC--CceEEEECCCCHH-HHHHHHHCCCCEEEEChHh
Confidence 55566666554 5889999999654 6888999999999999863
No 356
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=75.87 E-value=25 Score=42.33 Aligned_cols=117 Identities=16% Similarity=0.150 Sum_probs=70.6
Q ss_pred HHHH-HcCCCEEEEe-cCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcC--CcCCHHHHHHHHHcC
Q 000265 1171 SGVV-KGHADHVLIS-GHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDG--QLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1171 ~~aa-kaGAD~IvIs-G~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadG--GIrtG~DVaKAlaLG 1246 (1760)
..+. +.|+|.|.++ |.--|+-. +...+. ...|.++++.+ .|||.+=| ||. -.++.+++.+|
T Consensus 159 ~~f~~~tgvD~Lavs~Gt~hg~~~------~~~~l~-~e~L~~i~~~~-------~iPlv~hGgSGi~-~e~i~~~i~~G 223 (282)
T TIGR01859 159 EQFVKETGVDYLAAAIGTSHGKYK------GEPGLD-FERLKEIKELT-------NIPLVLHGASGIP-EEQIKKAIKLG 223 (282)
T ss_pred HHHHHHHCcCEEeeccCccccccC------CCCccC-HHHHHHHHHHh-------CCCEEEECCCCCC-HHHHHHHHHcC
Confidence 3344 4899999986 44222211 111122 34667776653 48999999 885 56799999999
Q ss_pred CCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000265 1247 AEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFR 1316 (1760)
Q Consensus 1247 AdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~ 1316 (1760)
++.|.++|.+..+..-........ +|. .++ -..-+....+.+.+.+++.|..+|..
T Consensus 224 i~kiNv~T~l~~a~~~~~~~~~~~----------~~~---~~~-~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 224 IAKINIDTDCRIAFTAAIRKVLTE----------KKD---EYD-PRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred CCEEEECcHHHHHHHHHHHHHHHh----------CCC---cCC-HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999887653222111000 000 010 02334455677788888888888743
No 357
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=75.69 E-value=21 Score=41.43 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=63.9
Q ss_pred HHHHHHHHhCCCCceEEEEccccCHHHH-HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000265 1142 QLIYDLKNANPGARISVKLVSEAGVGVI-ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
..|..||+.+|+++|..=+- ..+.|.+ ++-+.++|||+++|+|. ++ ...+..+....+++|
T Consensus 45 ~aV~~lr~~~pd~~IvAD~K-t~D~G~~e~~ma~~aGAd~~tV~g~------A~-----------~~TI~~~i~~A~~~~ 106 (217)
T COG0269 45 RAVRALRELFPDKIIVADLK-TADAGAIEARMAFEAGADWVTVLGA------AD-----------DATIKKAIKVAKEYG 106 (217)
T ss_pred HHHHHHHHHCCCCeEEeeee-ecchhHHHHHHHHHcCCCEEEEEec------CC-----------HHHHHHHHHHHHHcC
Confidence 56889999999999876321 1355544 56699999999999886 11 123344444444555
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHH-cCCCccccchh
Q 000265 1221 LRGRTILQTDGQLKTGRDVAIAAL-LGAEEFGFSTA 1255 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAla-LGAdaVg~GTa 1255 (1760)
....+.++ |..+..+.++=+- +|.+-+.+-++
T Consensus 107 ~~v~iDl~---~~~~~~~~~~~l~~~gvd~~~~H~g 139 (217)
T COG0269 107 KEVQIDLI---GVWDPEQRAKWLKELGVDQVILHRG 139 (217)
T ss_pred CeEEEEee---cCCCHHHHHHHHHHhCCCEEEEEec
Confidence 44344444 6789999999999 99998876664
No 358
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=75.38 E-value=6.3 Score=43.87 Aligned_cols=76 Identities=18% Similarity=0.046 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
.... +..+.+.|+|+|.++---- |- +-.+........+.++.+.. ++||+|-||| |..++..+..
T Consensus 104 ~~~e-~~~a~~~g~dYv~~gpvf~-T~-----sk~~~~~~g~~~l~~~~~~~-------~~pv~AlGGI-~~~~i~~l~~ 168 (180)
T PF02581_consen 104 SLEE-AREAEELGADYVFLGPVFP-TS-----SKPGAPPLGLDGLREIARAS-------PIPVYALGGI-TPENIPELRE 168 (180)
T ss_dssp SHHH-HHHHHHCTTSEEEEETSS---S-----SSSS-TTCHHHHHHHHHHHT-------SSCEEEESS---TTTHHHHHH
T ss_pred cHHH-HHHhhhcCCCEEEECCccC-CC-----CCccccccCHHHHHHHHHhC-------CCCEEEEcCC-CHHHHHHHHH
Confidence 3444 5667889999999954311 10 00111111123344444332 4999999999 8999999999
Q ss_pred cCCCccccchh
Q 000265 1245 LGAEEFGFSTA 1255 (1760)
Q Consensus 1245 LGAdaVg~GTa 1255 (1760)
+||++|.+-++
T Consensus 169 ~Ga~gvAvi~a 179 (180)
T PF02581_consen 169 AGADGVAVISA 179 (180)
T ss_dssp TT-SEEEESHH
T ss_pred cCCCEEEEEee
Confidence 99999987664
No 359
>PRK06852 aldolase; Validated
Probab=74.66 E-value=19 Score=43.93 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcc------c-cC---HHHHHHHHHHcCCCEEEEecC--CCCCCCCccccccccCC
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVS------E-AG---VGVIASGVVKGHADHVLISGH--DGGTGASRWTGIKNAGL 1203 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~------~-~G---vg~iA~~aakaGAD~IvIsG~--~GGTGas~~~si~~~Gl 1203 (1760)
.++++.+++++.++. +.|+++=..+ . .. +...+..+++.|||+|.+.=. .+. |.
T Consensus 152 ml~~l~~v~~ea~~~--GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~------------g~ 217 (304)
T PRK06852 152 MLSEAAQIIYEAHKH--GLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGA------------NP 217 (304)
T ss_pred HHHHHHHHHHHHHHh--CCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCC------------CC
Confidence 456777777777654 7888762221 1 11 222345589999999988321 111 11
Q ss_pred CHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCH-HHHH----HHHH-cCCCccccchh
Q 000265 1204 PWELGLAETHQTLVANDLRGRTILQTDGQLKTG-RDVA----IAAL-LGAEEFGFSTA 1255 (1760)
Q Consensus 1204 P~~~~Laev~q~L~~~glr~rV~LiadGGIrtG-~DVa----KAla-LGAdaVg~GTa 1255 (1760)
...+.++.+.+ .++||+++||=++. .|+. .++. .||.++.+||-
T Consensus 218 --~e~f~~vv~~~------g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRN 267 (304)
T PRK06852 218 --AELFKEAVLAA------GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRN 267 (304)
T ss_pred --HHHHHHHHHhC------CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechh
Confidence 24556665542 25899999998863 2333 4667 89999999985
No 360
>PRK08005 epimerase; Validated
Probab=74.51 E-value=27 Score=40.51 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecC-CCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGH-DGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~-~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
++...|..+|+. +...++-+-+.+.+..+.. ..+ -+|.|+|=.. .|-+|.. .+ ...+..+.+...
T Consensus 94 ~~~~~l~~Ik~~--G~k~GlAlnP~Tp~~~i~~-~l~-~vD~VlvMsV~PGf~GQ~---f~-------~~~~~KI~~l~~ 159 (210)
T PRK08005 94 NPSEILADIRAI--GAKAGLALNPATPLLPYRY-LAL-QLDALMIMTSEPDGRGQQ---FI-------AAMCEKVSQSRE 159 (210)
T ss_pred CHHHHHHHHHHc--CCcEEEEECCCCCHHHHHH-HHH-hcCEEEEEEecCCCccce---ec-------HHHHHHHHHHHH
Confidence 466778888887 5677777766666665543 222 5899877332 2222221 11 134444444322
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhH
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~ 1256 (1760)
++....|.+||||. ..-+.+....|||.+-+|++.
T Consensus 160 ---~~~~~~I~VDGGI~-~~~i~~l~~aGad~~V~Gsai 194 (210)
T PRK08005 160 ---HFPAAECWADGGIT-LRAARLLAAAGAQHLVIGRAL 194 (210)
T ss_pred ---hcccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHh
Confidence 22234699999996 566778899999999999874
No 361
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=74.48 E-value=5.5 Score=45.51 Aligned_cols=80 Identities=15% Similarity=0.090 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhC
Q 000265 1140 LAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAN 1219 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~ 1219 (1760)
..+.|..+++..|+.-|.+-.|-+ ...+..+.++||++|+--+. -+++.+.+.++
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~---~e~a~~a~~aGA~FivSP~~----------------------~~~v~~~~~~~ 100 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLT---AEQAEAAIAAGAQFIVSPGF----------------------DPEVIEYAREY 100 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--S---HHHHHHHHHHT-SEEEESS------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCeeEEEeccC---HHHHHHHHHcCCCEEECCCC----------------------CHHHHHHHHHc
Confidence 557788888888887776665433 24567799999999976332 13444444443
Q ss_pred CCCCceEEEEcCCcCCHHHHHHHHHcCCCcc
Q 000265 1220 DLRGRTILQTDGQLKTGRDVAIAALLGAEEF 1250 (1760)
Q Consensus 1220 glr~rV~LiadGGIrtG~DVaKAlaLGAdaV 1250 (1760)
+ ++++ =|+.|+.+|..|+.+||+.|
T Consensus 101 ~----i~~i--PG~~TptEi~~A~~~G~~~v 125 (196)
T PF01081_consen 101 G----IPYI--PGVMTPTEIMQALEAGADIV 125 (196)
T ss_dssp T----SEEE--EEESSHHHHHHHHHTT-SEE
T ss_pred C----Cccc--CCcCCHHHHHHHHHCCCCEE
Confidence 3 4443 48899999999999999965
No 362
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=74.34 E-value=15 Score=44.33 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=57.7
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHH---HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHH----HHH
Q 000265 1171 SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWEL---GLAETHQTLVANDLRGRTILQTDGQLKTGRDVA----IAA 1243 (1760)
Q Consensus 1171 ~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~---~Laev~q~L~~~glr~rV~LiadGGIrtG~DVa----KAl 1243 (1760)
..+.+.|+|+|.+.|..|-.. -+..++ .+..+.+. +.++++|++-=|-.+-+|.+ .|.
T Consensus 28 ~~~~~~Gv~gi~v~GstGE~~----------~Ls~~Er~~l~~~~~~~-----~~g~~pvi~gv~~~~t~~ai~~a~~A~ 92 (294)
T TIGR02313 28 EFQIEGGSHAISVGGTSGEPG----------SLTLEERKQAIENAIDQ-----IAGRIPFAPGTGALNHDETLELTKFAE 92 (294)
T ss_pred HHHHHcCCCEEEECccCcccc----------cCCHHHHHHHHHHHHHH-----hCCCCcEEEECCcchHHHHHHHHHHHH
Confidence 335568999999988866431 122222 22223332 34689998766655666654 567
Q ss_pred HcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHH
Q 000265 1244 LLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEE 1305 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~E 1305 (1760)
.+|||++.+..++.. ...++++.+||..+++.
T Consensus 93 ~~Gad~v~v~pP~y~------------------------------~~~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 93 EAGADAAMVIVPYYN------------------------------KPNQEALYDHFAEVADA 124 (294)
T ss_pred HcCCCEEEEcCccCC------------------------------CCCHHHHHHHHHHHHHh
Confidence 889999988876532 22468888888887753
No 363
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=74.33 E-value=31 Score=39.48 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEe----cCCCCCCCCccccccccCCCHHHHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLIS----GHDGGTGASRWTGIKNAGLPWELGLAETH 1213 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIs----G~~GGTGas~~~si~~~GlP~~~~Laev~ 1213 (1760)
+++..+|.++|+. +..+.+-+-+.+-+..+..-+. .+|.+.|= |. ||.. . .+..++.+.
T Consensus 99 q~~~~lv~~ir~~--Gmk~G~alkPgT~Ve~~~~~~~--~~D~vLvMtVePGF-GGQk-----F-------me~mm~KV~ 161 (224)
T KOG3111|consen 99 QKPAELVEKIREK--GMKVGLALKPGTPVEDLEPLAE--HVDMVLVMTVEPGF-GGQK-----F-------MEDMMPKVE 161 (224)
T ss_pred cCHHHHHHHHHHc--CCeeeEEeCCCCcHHHHHHhhc--cccEEEEEEecCCC-chhh-----h-------HHHHHHHHH
Confidence 4577889999987 5566555545444554443332 57888773 44 3321 1 245666665
Q ss_pred HHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000265 1214 QTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1214 q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
. |++.. ....+.+|||+ +..-|-+++..||+.+-.||+.+-|
T Consensus 162 ~-lR~ky--p~l~ievDGGv-~~~ti~~~a~AGAN~iVaGsavf~a 203 (224)
T KOG3111|consen 162 W-LREKY--PNLDIEVDGGV-GPSTIDKAAEAGANMIVAGSAVFGA 203 (224)
T ss_pred H-HHHhC--CCceEEecCCc-CcchHHHHHHcCCCEEEecceeecC
Confidence 4 44322 35778899998 4667899999999999999986653
No 364
>PLN02417 dihydrodipicolinate synthase
Probab=74.30 E-value=15 Score=43.79 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=44.0
Q ss_pred HHHHcCCCEEEEecCCCCCCCCccccccccCCCHHH---HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHH----HHH
Q 000265 1172 GVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWEL---GLAETHQTLVANDLRGRTILQTDGQLKTGRDVAI----AAL 1244 (1760)
Q Consensus 1172 ~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~---~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaK----Ala 1244 (1760)
.+.+.|+|+|.+-|+.|-.. -+..++ .+..+.+. +.++++|++.=|=.+-+|+++ |..
T Consensus 30 ~l~~~Gv~Gi~~~GstGE~~----------~ls~~Er~~~~~~~~~~-----~~~~~pvi~gv~~~~t~~~i~~a~~a~~ 94 (280)
T PLN02417 30 MQIENGAEGLIVGGTTGEGQ----------LMSWDEHIMLIGHTVNC-----FGGKIKVIGNTGSNSTREAIHATEQGFA 94 (280)
T ss_pred HHHHcCCCEEEECccCcchh----------hCCHHHHHHHHHHHHHH-----hCCCCcEEEECCCccHHHHHHHHHHHHH
Confidence 35567999999988866421 122222 22233332 346799887655545566653 578
Q ss_pred cCCCccccchhH
Q 000265 1245 LGAEEFGFSTAP 1256 (1760)
Q Consensus 1245 LGAdaVg~GTa~ 1256 (1760)
+|||+|.+-.+.
T Consensus 95 ~Gadav~~~~P~ 106 (280)
T PLN02417 95 VGMHAALHINPY 106 (280)
T ss_pred cCCCEEEEcCCc
Confidence 999999887664
No 365
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=73.28 E-value=3.1 Score=47.93 Aligned_cols=104 Identities=15% Similarity=0.333 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCC--CHHHHHHHcCccccccCCCCCHHHHHHHHHHHhccCCCCCCcEEEecC---CceEEEccCCCCCC
Q 000265 400 FDGVLELLVRAGR--SLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTD---GRYLGATLDRNGLR 474 (1760)
Q Consensus 400 ld~~Le~l~~~g~--sl~eAi~~~iPeaw~~~~~m~~e~rafYey~s~lmepwdGPa~iv~td---G~~igA~lDrnGLR 474 (1760)
|+|+-.|-.+.|. +.-||+.++ |||.-..+-.| |- ...++..++|.+++|+-| +++++ ++|++|-=
T Consensus 85 L~Nl~~L~qqYGLsK~~nEa~~vI--EAYrtLRDRgP-----yP-adqvv~~L~G~FaFVlyD~~~~tvf~-A~d~~G~v 155 (228)
T PF12481_consen 85 LENLCSLRQQYGLSKGANEAMFVI--EAYRTLRDRGP-----YP-ADQVVKDLEGSFAFVLYDSKTGTVFV-ARDSDGSV 155 (228)
T ss_pred hhhHHHHHHHhCcCcCcchhhhHH--HHHHHhhccCC-----CC-hHHHHHhccCceEEEEEecCCCcEEE-eecCCCCc
Confidence 5555444444554 666666544 66643322211 00 112456789998766543 35555 79999999
Q ss_pred CceEEEE-eCCEEEEEeccccccCCCCcEEEccccCCCcEEE
Q 000265 475 PGRFYIT-HSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLL 515 (1760)
Q Consensus 475 Plr~~~t-~d~~~i~ASE~galdi~~~~vv~kgrl~PGeml~ 515 (1760)
|+ |+|+ .|+.++++++.-.|.-.-.+-. ...-+|=|+.
T Consensus 156 pL-yWGi~~DGslv~Sdd~~~ik~~C~kS~--ApFP~Gc~f~ 194 (228)
T PF12481_consen 156 PL-YWGIAADGSLVFSDDLELIKEGCGKSF--APFPAGCFFS 194 (228)
T ss_pred ce-EEEEeCCCCEEEcCCHHHHHhhhhhcc--CCCCcceEEE
Confidence 99 6665 4688999988776643222221 1445575553
No 366
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=73.19 E-value=4.5 Score=51.85 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=30.5
Q ss_pred CCCCceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 111 DKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 111 E~DaCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
-|+.|||..+...+ .+....+.+|..|+|||= |+|||.+
T Consensus 16 ~~emCGI~G~~~~~-----~~~~~~~~gL~~LqhRGq--------dsaGIa~ 54 (474)
T PRK06388 16 PSEDCAVVGFKGGI-----NAYSPIITALRTLQHRGQ--------ESAGMAV 54 (474)
T ss_pred CCcCCeEEEEECCc-----chHHHHHHHHHHhhCcCc--------CcceEEE
Confidence 48899997766432 356677889999999994 8999987
No 367
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=72.19 E-value=16 Score=43.77 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=44.5
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCccccccccCCCHH---HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHH----HHH
Q 000265 1171 SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE---LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVA----IAA 1243 (1760)
Q Consensus 1171 ~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~---~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVa----KAl 1243 (1760)
..+.+.|+|+|.+-|+.|-... ++.+ ..+..+.+. +.+++||++.-|. +-.+.+ .|.
T Consensus 28 ~~l~~~Gv~gi~v~GstGE~~~----------Ls~eEr~~l~~~~~~~-----~~~~~pvi~gv~~-~t~~~i~~a~~a~ 91 (289)
T cd00951 28 EWLLSYGAAALFAAGGTGEFFS----------LTPDEYAQVVRAAVEE-----TAGRVPVLAGAGY-GTATAIAYAQAAE 91 (289)
T ss_pred HHHHHcCCCEEEECcCCcCccc----------CCHHHHHHHHHHHHHH-----hCCCCCEEEecCC-CHHHHHHHHHHHH
Confidence 3456789999999888664321 2222 233333343 2357899987675 666665 357
Q ss_pred HcCCCccccchhH
Q 000265 1244 LLGAEEFGFSTAP 1256 (1760)
Q Consensus 1244 aLGAdaVg~GTa~ 1256 (1760)
.+|||++.+-.++
T Consensus 92 ~~Gad~v~~~pP~ 104 (289)
T cd00951 92 KAGADGILLLPPY 104 (289)
T ss_pred HhCCCEEEECCCC
Confidence 8899999876553
No 368
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=71.98 E-value=20 Score=46.95 Aligned_cols=76 Identities=14% Similarity=-0.048 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
+.-..+..+.+.||.-|++.--+- ||.. | +-+..+..+.+. ..+||||+||+.+..|+..++
T Consensus 439 ~~~~~~~~~~~~Gageil~t~id~DGt~~---------G-~d~~l~~~v~~~-------~~ipviasGG~g~~~d~~~~~ 501 (538)
T PLN02617 439 GAYELAKAVEELGAGEILLNCIDCDGQGK---------G-FDIELVKLVSDA-------VTIPVIASSGAGTPEHFSDVF 501 (538)
T ss_pred CHHHHHHHHHhcCCCEEEEeecccccccc---------C-cCHHHHHHHHhh-------CCCCEEEECCCCCHHHHHHHH
Confidence 455678889999999998854422 2321 2 223344444443 269999999999999999999
Q ss_pred H-cCCCccccchhHH
Q 000265 1244 L-LGAEEFGFSTAPL 1257 (1760)
Q Consensus 1244 a-LGAdaVg~GTa~L 1257 (1760)
. .||+++..|+.|-
T Consensus 502 ~~~~~~a~~aa~~fh 516 (538)
T PLN02617 502 SKTNASAALAAGIFH 516 (538)
T ss_pred hcCCccEEEEEeeec
Confidence 7 5689887666543
No 369
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=71.80 E-value=18 Score=41.70 Aligned_cols=59 Identities=24% Similarity=0.359 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHH-HHHHHHcCCCEEEEe--cCCCCCCCC
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVI-ASGVVKGHADHVLIS--GHDGGTGAS 1193 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvIs--G~~GGTGas 1193 (1760)
.+|+++.++|..+|+..|+.||.+..=-..|.+.. +..+.++|||.|..+ |.++++|.+
T Consensus 163 ~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~~Gn~ 224 (237)
T PF00682_consen 163 MTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGERAGNA 224 (237)
T ss_dssp S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSSTTSB-
T ss_pred cCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCCCCCc
Confidence 35788999999999999889999987555677653 456889999998654 665555543
No 370
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=71.70 E-value=19 Score=41.19 Aligned_cols=86 Identities=22% Similarity=0.236 Sum_probs=49.5
Q ss_pred HHHHHHhCCCCce--EEEEc-cccCH-----HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHH
Q 000265 1144 IYDLKNANPGARI--SVKLV-SEAGV-----GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQT 1215 (1760)
Q Consensus 1144 I~~Lk~~~p~~pV--~VKlv-~~~Gv-----g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~ 1215 (1760)
|..+|+.. ++|| ++|-. ...++ -.-+..++++|||+|-+|+..- - .| ..|.+..+.
T Consensus 24 I~aik~~v-~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R----~---------Rp--~~l~~li~~ 87 (192)
T PF04131_consen 24 IRAIKKAV-DLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDR----P---------RP--ETLEELIRE 87 (192)
T ss_dssp HHHHHTTB--S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSS----S----------S--S-HHHHHHH
T ss_pred HHHHHHhc-CCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCC----C---------CC--cCHHHHHHH
Confidence 66677775 8888 34642 11122 1245679999999999998521 1 12 233444444
Q ss_pred HHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccc
Q 000265 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFG 1251 (1760)
Q Consensus 1216 L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg 1251 (1760)
.++.+ ..++|| |.|-.|...|..||+|.|+
T Consensus 88 i~~~~----~l~MAD--ist~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 88 IKEKY----QLVMAD--ISTLEEAINAAELGFDIIG 117 (192)
T ss_dssp HHHCT----SEEEEE---SSHHHHHHHHHTT-SEEE
T ss_pred HHHhC----cEEeee--cCCHHHHHHHHHcCCCEEE
Confidence 44432 567777 6899999999999999984
No 371
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=71.53 E-value=11 Score=45.10 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCCEEEEecCCC-CCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000265 1168 VIASGVVKGHADHVLISGHDG-GTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~G-GTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
..+....+.|++.|++.--+- ||. .| |-+..+.++.+. .++|||++||+++-.|+.+...+|
T Consensus 167 e~~~~~~~~g~~eii~TdI~rDGtl---------~G-~d~el~~~l~~~-------~~ipVIASGGv~sleDi~~L~~~g 229 (262)
T PLN02446 167 EETLEFLAAYCDEFLVHGVDVEGKR---------LG-IDEELVALLGEH-------SPIPVTYAGGVRSLDDLERVKVAG 229 (262)
T ss_pred HHHHHHHHhCCCEEEEEEEcCCCcc---------cC-CCHHHHHHHHhh-------CCCCEEEECCCCCHHHHHHHHHcC
Confidence 345667778899988753311 221 12 234445555544 268999999999999999999985
Q ss_pred --CCccccchhH
Q 000265 1247 --AEEFGFSTAP 1256 (1760)
Q Consensus 1247 --AdaVg~GTa~ 1256 (1760)
..++-+|+++
T Consensus 230 ~g~~gvIvGkAl 241 (262)
T PLN02446 230 GGRVDVTVGSAL 241 (262)
T ss_pred CCCEEEEEEeeH
Confidence 5678888875
No 372
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=71.48 E-value=24 Score=39.84 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCCCceE--EEEccccCHHHH-HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1141 AQLIYDLKNANPGARIS--VKLVSEAGVGVI-ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~--VKlv~~~Gvg~i-A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
.+.|.+||+.+|+..+. +|+. +.+.. +..+.++|||+|++.+..+. ..+.++.+.++
T Consensus 40 ~~~i~~l~~~~~~~~i~~d~k~~---d~~~~~~~~~~~~Gad~i~vh~~~~~-----------------~~~~~~i~~~~ 99 (206)
T TIGR03128 40 IEAVKEMKEAFPDRKVLADLKTM---DAGEYEAEQAFAAGADIVTVLGVADD-----------------ATIKGAVKAAK 99 (206)
T ss_pred HHHHHHHHHHCCCCEEEEEEeec---cchHHHHHHHHHcCCCEEEEeccCCH-----------------HHHHHHHHHHH
Confidence 35688888887665554 4543 44444 67789999999998754211 12344555555
Q ss_pred hCCCCCceEEEEc-CCcCCH-HHHHHHHHcCCCccccch
Q 000265 1218 ANDLRGRTILQTD-GQLKTG-RDVAIAALLGAEEFGFST 1254 (1760)
Q Consensus 1218 ~~glr~rV~Liad-GGIrtG-~DVaKAlaLGAdaVg~GT 1254 (1760)
+.| ++++++ =+..|. .++..+..+|+|.|++.+
T Consensus 100 ~~g----~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 100 KHG----KEVQVDLINVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred HcC----CEEEEEecCCCChHHHHHHHHHcCCCEEEEcC
Confidence 544 455554 244554 677778888999987643
No 373
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=70.96 E-value=8.5 Score=44.10 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1138 EDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1138 edLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
+++..+|..+|+. +..++|=+-+.+.+..+.. ... -+|.|+|=..+=|.++-+ .+. ....=++++++.+.
T Consensus 92 ~~~~~~i~~ik~~--g~k~GialnP~T~~~~~~~-~l~-~vD~VlvMsV~PG~~Gq~--f~~----~~~~KI~~l~~~~~ 161 (201)
T PF00834_consen 92 EDPKETIKYIKEA--GIKAGIALNPETPVEELEP-YLD-QVDMVLVMSVEPGFGGQK--FIP----EVLEKIRELRKLIP 161 (201)
T ss_dssp TTHHHHHHHHHHT--TSEEEEEE-TTS-GGGGTT-TGC-CSSEEEEESS-TTTSSB----HG----GHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHh--CCCEEEEEECCCCchHHHH-Hhh-hcCEEEEEEecCCCCccc--ccH----HHHHHHHHHHHHHH
Confidence 3566778888887 5666666655544433322 222 589998744332222211 111 13445667777777
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
++| ..+.|.+||||... -+.....+|||.+-.|++..
T Consensus 162 ~~~--~~~~I~vDGGI~~~-~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 162 ENG--LDFEIEVDGGINEE-NIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp HHT--CGSEEEEESSESTT-THHHHHHHT--EEEESHHHH
T ss_pred hcC--CceEEEEECCCCHH-HHHHHHHcCCCEEEECHHHh
Confidence 766 36999999999765 57778889999999998643
No 374
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=70.43 E-value=15 Score=40.14 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcC
Q 000265 1167 GVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLG 1246 (1760)
Q Consensus 1167 g~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLG 1246 (1760)
..++..|.+..+|+|.||+..|+- ....+++++.|++.|+.+ +. +..||+-...|..+...+|
T Consensus 53 ~e~v~aA~~~dv~vIgvSsl~g~h---------------~~l~~~lve~lre~G~~~-i~-v~~GGvip~~d~~~l~~~G 115 (143)
T COG2185 53 EEAVRAAVEEDVDVIGVSSLDGGH---------------LTLVPGLVEALREAGVED-IL-VVVGGVIPPGDYQELKEMG 115 (143)
T ss_pred HHHHHHHHhcCCCEEEEEeccchH---------------HHHHHHHHHHHHHhCCcc-eE-EeecCccCchhHHHHHHhC
Confidence 346667789999999999997762 356788999999998753 44 6889999999988888899
Q ss_pred CCcc
Q 000265 1247 AEEF 1250 (1760)
Q Consensus 1247 AdaV 1250 (1760)
.+++
T Consensus 116 ~~~i 119 (143)
T COG2185 116 VDRI 119 (143)
T ss_pred ccee
Confidence 9976
No 375
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=69.74 E-value=14 Score=46.69 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=35.2
Q ss_pred CCCCcEEEec--CCceEEEccCCCCCCCceEEEEeCCEEEEEeccccccCCCCcEEEccccCCC
Q 000265 450 WDGPALISFT--DGRYLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPG 511 (1760)
Q Consensus 450 wdGPa~iv~t--dG~~igA~lDrnGLRPlr~~~t~d~~~i~ASE~galdi~~~~vv~kgrl~PG 511 (1760)
.+||++++.- ....+-..||+.|-|-|-|-.+..+..+++|=++. .+..+. ++.|+
T Consensus 114 ~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~~~f~~~~st~g~---~~~~i~---e~~~~ 171 (520)
T KOG0573|consen 114 LQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDPFNFSLVLSTVGT---SGKLIY---EVPPV 171 (520)
T ss_pred ccCCceEEEEEccCcEEEEecccccceeeeEEeccCceeEEeecccc---CCcccc---ccCch
Confidence 4899877653 34555556999999999554454555555555444 223332 56776
No 376
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=69.62 E-value=26 Score=36.69 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=51.4
Q ss_pred ccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000265 1163 EAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1163 ~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
.+....+...+.+.++|+|.||...+. ....+.+..+.|++.+.+ ++++++.|.. ...++.+.
T Consensus 36 ~vp~e~~~~~a~~~~~d~V~iS~~~~~---------------~~~~~~~~~~~L~~~~~~-~i~i~~GG~~-~~~~~~~~ 98 (122)
T cd02071 36 RQTPEEIVEAAIQEDVDVIGLSSLSGG---------------HMTLFPEVIELLRELGAG-DILVVGGGII-PPEDYELL 98 (122)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcccchh---------------hHHHHHHHHHHHHhcCCC-CCEEEEECCC-CHHHHHHH
Confidence 345567778899999999999887432 233557777778777654 6777776654 45778888
Q ss_pred HHcCCCcc
Q 000265 1243 ALLGAEEF 1250 (1760)
Q Consensus 1243 laLGAdaV 1250 (1760)
..+|.|+|
T Consensus 99 ~~~G~d~~ 106 (122)
T cd02071 99 KEMGVAEI 106 (122)
T ss_pred HHCCCCEE
Confidence 99999875
No 377
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=68.89 E-value=38 Score=42.31 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=99.7
Q ss_pred EecCCccCHHHHHHHHhccCCCCeeEEEEEEeeCCCChhhHHHHHHHHHHHHHHHHHcCCcEEEEcCCC---CCCCCccc
Q 000265 685 SLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRA---FSSKRVAV 761 (1760)
Q Consensus 685 ~l~sPiL~~~~~~~l~~~~~~~~~~~~i~~~~~~~~g~~~l~~al~~l~~~a~~av~~G~~iliLsDr~---~~~~~~~i 761 (1760)
.+.-|+++.++.+.|+......+..+ | .... ..|..|+.-|+.-|+.|-.+ .+-...++
T Consensus 199 ~~~~P~i~ked~~~i~~~~~~~lv~k----------G---V~~~-----~D~~~a~~tg~~~I~vsnhggrqlD~g~st~ 260 (360)
T COG1304 199 ALSVPVISKEDGAGISKEWAGPLVLK----------G---ILAP-----EDAAGAGGTGADGIEVSNHGGRQLDWGISTA 260 (360)
T ss_pred hcCCCcccHHHHhHHHHhcCCcHHHh----------C---CCCH-----HHHHhhccCCceEEEEEcCCCccccCCCChH
Confidence 56789999999999987432111000 1 1111 45777888999999998643 33334455
Q ss_pred cHHHHHHHHHHHHHHcCCCCceeEEEeeCCCCcHHHHHHHHhcCcccccHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 000265 762 SSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKASGEFHSKDEL 841 (1760)
Q Consensus 762 p~lLav~avh~~Li~~~~R~~~~lvvesge~re~Hh~a~L~GyGA~av~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (1760)
.+|..+.... =.++-+++ +|-+|.=-|++-.|.+||++|- ++.-.++.|... .++.
T Consensus 261 ~~L~ei~~av--------~~~~~vi~-dGGiR~G~Dv~KAlALGA~~v~--igrp~L~~l~~~-------------g~~G 316 (360)
T COG1304 261 DSLPEIVEAV--------GDRIEVIA-DGGIRSGLDVAKALALGADAVG--IGRPFLYGLAAG-------------GEAG 316 (360)
T ss_pred HHHHHHHHHh--------CCCeEEEe-cCCCCCHHHHHHHHHhCCchhh--hhHHHHHHHHhc-------------cHHH
Confidence 5555554332 22366777 6779999999999999999993 222233333332 3455
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhcccccchh
Q 000265 842 VKKYFKASNYGMMKVLAKMGISTLASYKGAQIF 874 (1760)
Q Consensus 842 ~~ny~~a~~~GllKvmsKMGIstl~SY~gaqiF 874 (1760)
+.+.+.-+.+.|.-+|-=+|..+|+.-+-..+.
T Consensus 317 V~~~le~~~~El~~~M~L~G~~~i~el~~~~l~ 349 (360)
T COG1304 317 VERVLEIIRKELKIAMALTGAKNIEELKRVPLV 349 (360)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHhccCcee
Confidence 788889999999999999999999987665543
No 378
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=68.60 E-value=23 Score=42.83 Aligned_cols=87 Identities=14% Similarity=0.041 Sum_probs=54.5
Q ss_pred HHHHcCCCEEEEecCCCCCCCCccccccccCCCHH---HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHH----HHHH
Q 000265 1172 GVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE---LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVA----IAAL 1244 (1760)
Q Consensus 1172 ~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~---~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVa----KAla 1244 (1760)
.+.+.|+|+|.+-|..|-.. .+..+ ..+..+.+. +.+++||++.-|- +-.+.+ .|..
T Consensus 36 ~l~~~Gv~Gi~~~GstGE~~----------~Lt~eEr~~~~~~~~~~-----~~~~~pvi~gv~~-~t~~~i~~~~~a~~ 99 (303)
T PRK03620 36 WLAPYGAAALFAAGGTGEFF----------SLTPDEYSQVVRAAVET-----TAGRVPVIAGAGG-GTAQAIEYAQAAER 99 (303)
T ss_pred HHHHcCCCEEEECcCCcCcc----------cCCHHHHHHHHHHHHHH-----hCCCCcEEEecCC-CHHHHHHHHHHHHH
Confidence 35567999999988766431 22322 223333333 3457999986664 555555 4577
Q ss_pred cCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHH
Q 000265 1245 LGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAE 1304 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ 1304 (1760)
+|||+|.+-.++.. ...++++.+||..+++
T Consensus 100 ~Gadav~~~pP~y~------------------------------~~~~~~i~~~f~~va~ 129 (303)
T PRK03620 100 AGADGILLLPPYLT------------------------------EAPQEGLAAHVEAVCK 129 (303)
T ss_pred hCCCEEEECCCCCC------------------------------CCCHHHHHHHHHHHHH
Confidence 89999987654322 1247888888888764
No 379
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.42 E-value=18 Score=41.82 Aligned_cols=82 Identities=16% Similarity=0.073 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCC---CCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1140 LAQLIYDLKNANP---GARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1140 LaqlI~~Lk~~~p---~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
..+.|..|++.++ +..|.+-.|.+ ...+..+.++||++|+--+. -+++.+++
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~---~~~~~~a~~aGA~FivsP~~----------------------~~~v~~~~ 105 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLD---AVTARLAILAGAQFIVSPSF----------------------NRETAKIC 105 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCC---HHHHHHHHHcCCCEEECCCC----------------------CHHHHHHH
Confidence 5567888988774 34444443322 13467799999999973221 13445555
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCcccc
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGF 1252 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~ 1252 (1760)
.+++ ++++ =|..|..++..|+.+|||.+.+
T Consensus 106 ~~~~----i~~i--PG~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 106 NLYQ----IPYL--PGCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred HHcC----CCEE--CCcCCHHHHHHHHHcCCCEEEE
Confidence 5443 4444 3899999999999999999987
No 380
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=68.32 E-value=5.1 Score=51.50 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=31.3
Q ss_pred CCCCCceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 110 FDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 110 ~E~DaCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
.-|+.|||..+...+ ++....+.+|..|+|||= |+|||.+
T Consensus 7 ~~~emCGI~Gi~~~~-----~~~~~~~~gL~~LqHRGq--------dsaGIa~ 46 (484)
T PRK07272 7 SLNEECGVFGIWGHP-----DAAQLTYFGLHSLQHRGQ--------EGAGIVS 46 (484)
T ss_pred CccccCeEEEEECCc-----cHHHHHHHHHHHhcccCC--------ccceEEE
Confidence 348999997776422 456777889999999993 8999987
No 381
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=68.21 E-value=14 Score=48.15 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=53.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCH-----------
Q 000265 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTG----------- 1236 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG----------- 1236 (1760)
..|..-.+.|||-|++=--+|-. .++ .. -.|....+.++.+.+ .|||.+-|||||-
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~-~~~---~~--~~~~~~~i~~i~~~~-------~ip~~vGGGIr~~~d~~~~~~~~~ 337 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFR-DFP---LG--DLPMLEVLRRASENV-------FVPLTVGGGIRDFTDANGRYYSSL 337 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCc-CCc---cc--chhHHHHHHHHHhhC-------CCCEEEcCCccccccccccccchH
Confidence 46677778999987653333310 000 00 113344556655542 5999999999998
Q ss_pred HHHHHHHHcCCCccccchhHHH
Q 000265 1237 RDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1237 ~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
.++-+.+.+|||.|.+||+++.
T Consensus 338 e~~~~~l~~GadkV~i~s~Av~ 359 (538)
T PLN02617 338 EVASEYFRSGADKISIGSDAVY 359 (538)
T ss_pred HHHHHHHHcCCCEEEEChHHHh
Confidence 5589999999999999998776
No 382
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=67.89 E-value=34 Score=37.10 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCC-HHH----H
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKT-GRD----V 1239 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrt-G~D----V 1239 (1760)
-...+...|.+.+||+|-+|..-|. +...+.++.+.|++.|+++ +++++-|++-. ..| .
T Consensus 40 ~~e~~v~aa~~~~adiVglS~l~~~---------------~~~~~~~~~~~l~~~gl~~-~~vivGG~~vi~~~d~~~~~ 103 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSSLYGH---------------GEIDCKGLRQKCDEAGLEG-ILLYVGGNLVVGKQDFPDVE 103 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccc---------------CHHHHHHHHHHHHHCCCCC-CEEEecCCcCcChhhhHHHH
Confidence 4456778899999999999987543 2346788999999999875 55666665433 334 3
Q ss_pred HHHHHcCCCccc
Q 000265 1240 AIAALLGAEEFG 1251 (1760)
Q Consensus 1240 aKAlaLGAdaVg 1251 (1760)
.++.++|.++|-
T Consensus 104 ~~l~~~Gv~~vF 115 (134)
T TIGR01501 104 KRFKEMGFDRVF 115 (134)
T ss_pred HHHHHcCCCEEE
Confidence 468889988763
No 383
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=67.61 E-value=23 Score=42.02 Aligned_cols=57 Identities=28% Similarity=0.388 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHhCCC--CceEEEEccccCHHHH-HHHHHHcCCCEEEE--ecCCCCCC
Q 000265 1135 YSIEDLAQLIYDLKNANPG--ARISVKLVSEAGVGVI-ASGVVKGHADHVLI--SGHDGGTG 1191 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~--~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvI--sG~~GGTG 1191 (1760)
-+++++.+++..+|+..|+ .||.+..=...|.+.. +..+.++||+.|.. .|-++++|
T Consensus 169 ~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~~aG 230 (268)
T cd07940 169 LTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERAG 230 (268)
T ss_pred CCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccccccc
Confidence 3578899999999998876 7888876444566653 35588999999864 45544444
No 384
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=67.43 E-value=17 Score=43.25 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=49.8
Q ss_pred CHHHHHHHH-HHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000265 1165 GVGVIASGV-VKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1165 Gvg~iA~~a-akaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
.+...+..+ ...+||+|+|+|.. ||.. |...-|.++.+.+ .+||++.+|+ |..-|.+.+
T Consensus 159 ~~~~~~~~a~~~~~aDaviVtG~~--TG~~----------~~~~~l~~vr~~~-------~~PVlvGSGv-t~~Ni~~~l 218 (254)
T PF03437_consen 159 DLEEAAKDAVERGGADAVIVTGKA--TGEP----------PDPEKLKRVREAV-------PVPVLVGSGV-TPENIAEYL 218 (254)
T ss_pred CHHHHHHHHHHhcCCCEEEECCcc--cCCC----------CCHHHHHHHHhcC-------CCCEEEecCC-CHHHHHHHH
Confidence 344555444 68899999999973 3221 2333455555542 2899999997 778888877
Q ss_pred HcCCCccccchhHHH
Q 000265 1244 LLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~ 1258 (1760)
.. ||++-+||.|..
T Consensus 219 ~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 219 SY-ADGAIVGSYFKK 232 (254)
T ss_pred Hh-CCEEEEeeeeee
Confidence 55 999999997553
No 385
>PLN02623 pyruvate kinase
Probab=66.71 E-value=68 Score=42.39 Aligned_cols=106 Identities=20% Similarity=0.155 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHH-HHHHHHH
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE-LGLAETH 1213 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~-~~Laev~ 1213 (1760)
.+.+|+.++-..++..+....|++|.-...|+..+..-+. |+|+|.|.=.+=| -..|+|-. ....++.
T Consensus 301 r~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~--g~DgImIgrgDLg---------velg~~~v~~~qk~Ii 369 (581)
T PLN02623 301 KDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIT--ASDGAMVARGDLG---------AELPIEEVPLLQEEII 369 (581)
T ss_pred CCHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHH--hCCEEEECcchhh---------hhcCcHHHHHHHHHHH
Confidence 4567777666666666667789999855456655544343 9999999321111 12344322 2345555
Q ss_pred HHHHhCCCCCceEEEEcCCc-------CCH-----HHHHHHHHcCCCccccchh
Q 000265 1214 QTLVANDLRGRTILQTDGQL-------KTG-----RDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1214 q~L~~~glr~rV~LiadGGI-------rtG-----~DVaKAlaLGAdaVg~GTa 1255 (1760)
+.+.+.| .|+++...+ .++ .||+.++..|+++|.++.=
T Consensus 370 ~~~~~~g----KpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~E 419 (581)
T PLN02623 370 RRCRSMG----KPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGE 419 (581)
T ss_pred HHHHHhC----CCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecch
Confidence 6665544 466655521 244 5999999999999998853
No 386
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=66.66 E-value=4.8 Score=51.22 Aligned_cols=37 Identities=32% Similarity=0.592 Sum_probs=30.1
Q ss_pred CCCceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 112 KDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 112 ~DaCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
|+.|||..+.. + +.....+.+|..|+|||- |+|||.+
T Consensus 2 ~e~CGI~G~~~-~-----~~~~~l~~gL~~LqhRG~--------dsaGIa~ 38 (442)
T PRK08341 2 REKCGIFAAYS-E-----NAPKKAYYALIALQHRGQ--------EGAGISV 38 (442)
T ss_pred CcccEEEEEEC-C-----CcHHHHHHHHHHhhccCc--------ccceEEE
Confidence 67999977764 2 256778899999999994 8999987
No 387
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.62 E-value=28 Score=40.66 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=50.0
Q ss_pred HHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000265 1141 AQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1141 aqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
.++....++..|+.-|.+-.|-+ ...+..+.++||++|+--|.+ +++.+.+.+.+
T Consensus 58 ~~l~~~~~~~~p~~~vGaGTVl~---~e~a~~a~~aGA~FiVsP~~~----------------------~~v~~~~~~~~ 112 (222)
T PRK07114 58 AELVKYAAKELPGMILGVGSIVD---AATAALYIQLGANFIVTPLFN----------------------PDIAKVCNRRK 112 (222)
T ss_pred HHHHHHHHhhCCCeEEeeEeCcC---HHHHHHHHHcCCCEEECCCCC----------------------HHHHHHHHHcC
Confidence 33333444555666665554432 234677999999999753321 33444444333
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCcc
Q 000265 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEF 1250 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaV 1250 (1760)
+..-=|+.|+.+|..|+.+||+.|
T Consensus 113 ------i~~iPG~~TpsEi~~A~~~Ga~~v 136 (222)
T PRK07114 113 ------VPYSPGCGSLSEIGYAEELGCEIV 136 (222)
T ss_pred ------CCEeCCCCCHHHHHHHHHCCCCEE
Confidence 334568999999999999999965
No 388
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=66.59 E-value=31 Score=40.86 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=44.7
Q ss_pred HHHHcCCCEEEEecCCCCCCCCccccccccCCCHH---HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHH----HHHH
Q 000265 1172 GVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE---LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVA----IAAL 1244 (1760)
Q Consensus 1172 ~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~---~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVa----KAla 1244 (1760)
.+.+.|+|+|.+-|+.|-... +.++ ..+..+.+. ..++++|++.-|=.+-.+.+ .|..
T Consensus 26 ~l~~~Gv~gi~~~GstGE~~~----------ls~~Er~~l~~~~~~~-----~~~~~~vi~gv~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 26 FLIEAGVDGLVVLGTTGEAPT----------LTDEERKEVIEAVVEA-----VAGRVPVIAGVGANSTREAIELARHAEE 90 (281)
T ss_pred HHHHcCCCEEEECCCCccccc----------CCHHHHHHHHHHHHHH-----hCCCCeEEEecCCccHHHHHHHHHHHHH
Confidence 345669999999888664321 2222 233333333 23578888866555555544 4677
Q ss_pred cCCCccccchhHHH
Q 000265 1245 LGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1245 LGAdaVg~GTa~L~ 1258 (1760)
+|||++.+..++..
T Consensus 91 ~Gad~v~v~pP~y~ 104 (281)
T cd00408 91 AGADGVLVVPPYYN 104 (281)
T ss_pred cCCCEEEECCCcCC
Confidence 89999998776543
No 389
>PRK06801 hypothetical protein; Provisional
Probab=66.55 E-value=47 Score=40.29 Aligned_cols=72 Identities=24% Similarity=0.193 Sum_probs=51.0
Q ss_pred HHHcCCCEEEEecCCCCCCCCccccccccCCC--HHHHHHHHHHHHHhCCCCCceEEEEcCC--cCCHHHHHHHHHcCCC
Q 000265 1173 VVKGHADHVLISGHDGGTGASRWTGIKNAGLP--WELGLAETHQTLVANDLRGRTILQTDGQ--LKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1173 aakaGAD~IvIsG~~GGTGas~~~si~~~GlP--~~~~Laev~q~L~~~glr~rV~LiadGG--IrtG~DVaKAlaLGAd 1248 (1760)
+.+.|+|.+-|+- |-+|+-. -+.| ....|.++++.+ ++||.+-|| |. -.++.+++.+|++
T Consensus 165 ~~~tgvD~LAvai--Gt~Hg~y------~~~~~l~~e~l~~i~~~~-------~~PLVlHGGSgi~-~e~~~~~i~~Gi~ 228 (286)
T PRK06801 165 VDRTGIDALAVAI--GNAHGKY------KGEPKLDFARLAAIHQQT-------GLPLVLHGGSGIS-DADFRRAIELGIH 228 (286)
T ss_pred HHHHCcCEEEecc--CCCCCCC------CCCCCCCHHHHHHHHHhc-------CCCEEEECCCCCC-HHHHHHHHHcCCc
Confidence 4478999998832 4344322 1211 234666666542 489999999 75 5789999999999
Q ss_pred ccccchhHHHHh
Q 000265 1249 EFGFSTAPLITL 1260 (1760)
Q Consensus 1249 aVg~GTa~L~Al 1260 (1760)
.|.++|.+..+.
T Consensus 229 KINv~T~~~~a~ 240 (286)
T PRK06801 229 KINFYTGMSQAA 240 (286)
T ss_pred EEEehhHHHHHH
Confidence 999999988875
No 390
>PRK08999 hypothetical protein; Provisional
Probab=66.44 E-value=11 Score=45.14 Aligned_cols=75 Identities=16% Similarity=0.034 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCH-HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPW-ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAA 1243 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~-~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAl 1243 (1760)
.... +..+.+.|+|+|.++=- --|.. |.-..|. ...+.++.+. -++||+|-||| |..++...+
T Consensus 235 ~~~~-~~~a~~~~~dyi~~gpv-f~t~t------k~~~~~~g~~~~~~~~~~-------~~~Pv~AiGGI-~~~~~~~~~ 298 (312)
T PRK08999 235 DAEE-LARAQRLGVDFAVLSPV-QPTAS------HPGAAPLGWEGFAALIAG-------VPLPVYALGGL-GPGDLEEAR 298 (312)
T ss_pred CHHH-HHHHHhcCCCEEEECCC-cCCCC------CCCCCCCCHHHHHHHHHh-------CCCCEEEECCC-CHHHHHHHH
Confidence 3433 34567889999998433 22211 1111121 2344444332 25999999999 999999999
Q ss_pred HcCCCccccchh
Q 000265 1244 LLGAEEFGFSTA 1255 (1760)
Q Consensus 1244 aLGAdaVg~GTa 1255 (1760)
.+||++|.+-++
T Consensus 299 ~~g~~gva~i~~ 310 (312)
T PRK08999 299 EHGAQGIAGIRG 310 (312)
T ss_pred HhCCCEEEEEEE
Confidence 999999976554
No 391
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=66.41 E-value=25 Score=42.77 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=55.6
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHH---HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHH----HHH
Q 000265 1171 SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWEL---GLAETHQTLVANDLRGRTILQTDGQLKTGRDVA----IAA 1243 (1760)
Q Consensus 1171 ~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~---~Laev~q~L~~~glr~rV~LiadGGIrtG~DVa----KAl 1243 (1760)
..+.+.|+++|.+.|+.|-... +..++ .+..+.+. +.++++||+-=|=.+-.|++ .|-
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~~~----------Lt~eEr~~v~~~~~~~-----~~grvpvi~Gv~~~~t~~ai~~a~~A~ 100 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGECAT----------LTWEEKQAFVATVVET-----VAGRVPVFVGATTLNTRDTIARTRALL 100 (309)
T ss_pred HHHHHcCCCEEEECcccccchh----------CCHHHHHHHHHHHHHH-----hCCCCCEEEEeccCCHHHHHHHHHHHH
Confidence 3456789999999888664321 22222 22223333 34679988765544445555 356
Q ss_pred HcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHH
Q 000265 1244 LLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAE 1304 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ 1304 (1760)
.+|||++.+-.++.+ ...++++..||..+++
T Consensus 101 ~~Gad~vlv~~P~y~------------------------------~~~~~~l~~yf~~va~ 131 (309)
T cd00952 101 DLGADGTMLGRPMWL------------------------------PLDVDTAVQFYRDVAE 131 (309)
T ss_pred HhCCCEEEECCCcCC------------------------------CCCHHHHHHHHHHHHH
Confidence 789999988876432 2246888888877764
No 392
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=66.24 E-value=48 Score=39.83 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=49.5
Q ss_pred ceeEEEeeCCCCcHHHHHHHHhcCcccccHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Q 000265 782 RIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMG 861 (1760)
Q Consensus 782 ~~~lvvesge~re~Hh~a~L~GyGA~av~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMG 861 (1760)
++-||. +|.+++.-|+.-++-.|||+|-=+ ...+. + + ++.+-+.+||.+.|.++|
T Consensus 234 ~ipvi~-~GGI~s~~da~~~l~~GAd~V~ig--r~~l~----~-------------p-----~~~~~i~~~l~~~~~~~g 288 (300)
T TIGR01037 234 DIPIIG-VGGITSFEDALEFLMAGASAVQVG--TAVYY----R-------------G-----FAFKKIIEGLIAFLKAEG 288 (300)
T ss_pred CCCEEE-ECCCCCHHHHHHHHHcCCCceeec--HHHhc----C-------------c-----hHHHHHHHHHHHHHHHcC
Confidence 466666 799999999999999999998622 22221 1 1 345568889999999999
Q ss_pred hhhhhccccc
Q 000265 862 ISTLASYKGA 871 (1760)
Q Consensus 862 Istl~SY~ga 871 (1760)
.++++..+|.
T Consensus 289 ~~~~~e~~g~ 298 (300)
T TIGR01037 289 FTSIEELIGI 298 (300)
T ss_pred CCCHHHHhCc
Confidence 9999998873
No 393
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=66.12 E-value=19 Score=41.72 Aligned_cols=77 Identities=19% Similarity=-0.002 Sum_probs=52.6
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCC
Q 000265 1169 IASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1169 iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAd 1248 (1760)
-+..+.+.|+|+|.+ |+=-.|.. -++........|..+.+. ..+|+++-||| +...|...+..||+
T Consensus 116 ea~~A~~~g~DYv~~-GpifpT~t-----K~~~~~~G~~~l~~~~~~-------~~iP~vAIGGi-~~~nv~~v~~~Ga~ 181 (211)
T COG0352 116 EALEAEELGADYVGL-GPIFPTST-----KPDAPPLGLEGLREIREL-------VNIPVVAIGGI-NLENVPEVLEAGAD 181 (211)
T ss_pred HHHHHHhcCCCEEEE-CCcCCCCC-----CCCCCccCHHHHHHHHHh-------CCCCEEEEcCC-CHHHHHHHHHhCCC
Confidence 456688899999988 33233321 112211233455555544 24999999998 67889999999999
Q ss_pred ccccchhHHHH
Q 000265 1249 EFGFSTAPLIT 1259 (1760)
Q Consensus 1249 aVg~GTa~L~A 1259 (1760)
+|.+-++++-+
T Consensus 182 gVAvvsai~~a 192 (211)
T COG0352 182 GVAVVSAITSA 192 (211)
T ss_pred eEEehhHhhcC
Confidence 99999987764
No 394
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=65.56 E-value=87 Score=40.11 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=36.4
Q ss_pred cEEEEecccccccccccCCcEEEEcC---CCccc--cccccCcEEEEeCCCCCcccCCCcceEEEEEc
Q 000265 1499 GEAYFNGMAAERFCVRNSGARAVVEG---VGDHG--CEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLD 1561 (1760)
Q Consensus 1499 G~i~v~G~aGeR~gvr~sG~~iVV~G---~Gd~~--~eyMtgG~ivVlG~~G~~~gagM~gG~iyv~~ 1561 (1760)
|.|...|++-.+|. .++++..+| +.++. |.--++|.+.|.|.-|. ..||.++...
T Consensus 247 ~~I~A~g~v~a~f~---e~a~I~a~~~I~I~~~i~~s~v~a~~~i~v~~~~g~-----IiGG~i~a~~ 306 (451)
T PF03961_consen 247 GKIKAGGNVRAKFI---ENATIEAGGDIYIENYILNSKVKAGGSIIVNGGKGR-----IIGGEIKAGN 306 (451)
T ss_pred eEEEECcchhhhhh---hhceEEeCCcEEechhhhhhheecCCeEEEeCCCCE-----EECcEEEEcc
Confidence 88888888877776 445555555 23332 55557888888776666 6677766654
No 395
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=65.50 E-value=49 Score=39.03 Aligned_cols=120 Identities=15% Similarity=0.129 Sum_probs=68.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCceEEEEccccC----HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCH
Q 000265 1130 PHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAG----VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPW 1205 (1760)
Q Consensus 1130 ~hhDiySiedLaqlI~~Lk~~~p~~pV~VKlv~~~G----vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~ 1205 (1760)
|+....+.+++...+..+.... ..||++-+....| +...+..+.++|+++|.|.+.......+.. -...-+|.
T Consensus 47 pD~~~~~~~e~~~~~~~I~~~~-~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~--~~~~~~~~ 123 (243)
T cd00377 47 PDGGLLTLDEVLAAVRRIARAV-DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHH--GGKVLVPI 123 (243)
T ss_pred CCCCcCCHHHHHHHHHHHHhhc-cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCC--CCCeecCH
Confidence 4455678888888888887775 7898887754221 222345578899999999433211100000 00112466
Q ss_pred HHHHHHHHHHHHhC-CCCCceEEEEc--------CCcCCHHHHH-HHHHcCCCccccc
Q 000265 1206 ELGLAETHQTLVAN-DLRGRTILQTD--------GQLKTGRDVA-IAALLGAEEFGFS 1253 (1760)
Q Consensus 1206 ~~~Laev~q~L~~~-glr~rV~Liad--------GGIrtG~DVa-KAlaLGAdaVg~G 1253 (1760)
++.+..+..+.... +. .++.|++= .|+...-.-+ .+...|||.+.+=
T Consensus 124 ee~~~ki~aa~~a~~~~-~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~ 180 (243)
T cd00377 124 EEFVAKIKAARDARDDL-PDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVE 180 (243)
T ss_pred HHHHHHHHHHHHHHhcc-CCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 66665555443331 22 36777775 3444443333 4577899998654
No 396
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=65.21 E-value=26 Score=40.67 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHH-HHHHHHcCCCEEEE--ecCCCCCCC
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVI-ASGVVKGHADHVLI--SGHDGGTGA 1192 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvI--sG~~GGTGa 1192 (1760)
-+++++.++|.++++..|+.|+.+-.=...|.+.. +..|.++||+.|.. .|-++++|.
T Consensus 172 ~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn 232 (265)
T cd03174 172 ATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGN 232 (265)
T ss_pred cCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccC
Confidence 46789999999999998778888876444577653 45688999999854 355555544
No 397
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=64.29 E-value=59 Score=38.13 Aligned_cols=77 Identities=12% Similarity=0.062 Sum_probs=51.5
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCcc
Q 000265 1171 SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEF 1250 (1760)
Q Consensus 1171 ~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaV 1250 (1760)
..|+++||++|-. +-|+ +++.|.-....+.++++.+...+. +..| ..--+|+..+|..++.+||+.+
T Consensus 120 ~~Aa~aGa~yvsP--yvgR--------i~d~g~D~~~~i~~i~~~~~~~~~--~tkI-LaAS~r~~~~v~~a~~~G~d~v 186 (222)
T PRK12656 120 LLAIEAGADYLAP--YYNR--------MENLNIDSNAVIGQLAEAIDRENS--DSKI-LAASFKNVAQVNKAFALGAQAV 186 (222)
T ss_pred HHHHHCCCCEEec--ccch--------hhhcCCCHHHHHHHHHHHHHhcCC--CCEE-EEEecCCHHHHHHHHHcCCCEE
Confidence 3477899988743 2232 234444334567777777766554 3434 4456999999999999999999
Q ss_pred ccchhHHHHh
Q 000265 1251 GFSTAPLITL 1260 (1760)
Q Consensus 1251 g~GTa~L~Al 1260 (1760)
-+.-..+-.+
T Consensus 187 Tvp~~vl~~l 196 (222)
T PRK12656 187 TAGPDVFEAA 196 (222)
T ss_pred ecCHHHHHHH
Confidence 7777666543
No 398
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=64.03 E-value=32 Score=41.39 Aligned_cols=73 Identities=14% Similarity=0.015 Sum_probs=42.0
Q ss_pred HHHHcC-CCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHH----HHHHcC
Q 000265 1172 GVVKGH-ADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVA----IAALLG 1246 (1760)
Q Consensus 1172 ~aakaG-AD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVa----KAlaLG 1246 (1760)
.+.+.| +|+|.+.|..|-.. .+..++-..-+..+... ..++++|++.=|-.+-.|++ .|..+|
T Consensus 29 ~~i~~G~v~gi~~~GstGE~~----------~Lt~eEr~~~~~~~~~~--~~~~~pvi~gv~~~~t~~~i~la~~a~~~G 96 (290)
T TIGR00683 29 HNIDKMKVDGLYVGGSTGENF----------MLSTEEKKEIFRIAKDE--AKDQIALIAQVGSVNLKEAVELGKYATELG 96 (290)
T ss_pred HHHhCCCcCEEEECCcccccc----------cCCHHHHHHHHHHHHHH--hCCCCcEEEecCCCCHHHHHHHHHHHHHhC
Confidence 355678 99999988866431 22333222222222222 23578888764433344444 357889
Q ss_pred CCccccchhH
Q 000265 1247 AEEFGFSTAP 1256 (1760)
Q Consensus 1247 AdaVg~GTa~ 1256 (1760)
||+|.+..++
T Consensus 97 ad~v~v~~P~ 106 (290)
T TIGR00683 97 YDCLSAVTPF 106 (290)
T ss_pred CCEEEEeCCc
Confidence 9999987654
No 399
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=63.17 E-value=6.7 Score=50.35 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=30.2
Q ss_pred CCCCceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 111 DKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 111 E~DaCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
-|+.|||..+... .+.......+|..|+|||= |+|||.+
T Consensus 8 ~~emCGI~Gi~~~-----~~~~~~~~~gL~~LqHRG~--------dsaGia~ 46 (475)
T PRK07631 8 LNEECGVFGIWGH-----EEAAQITYYGLHSLQHRGQ--------EGAGIVV 46 (475)
T ss_pred cccCCcEEEEECC-----chhHHHHHHHHHHhcCCCc--------ccCeEEE
Confidence 3889999777642 2456666789999999994 7899986
No 400
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=62.88 E-value=6.5 Score=50.39 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=30.4
Q ss_pred CCCCceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 111 DKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 111 E~DaCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
=|+.|||..+...+ +.......+|..|+|||= |+|||.+
T Consensus 8 ~~~mCGI~Gi~~~~-----~~~~~~~~gL~~LqhRG~--------dsaGia~ 46 (471)
T PRK06781 8 LNEECGVFGIWGHE-----NAAQVSYYGLHSLQHRGQ--------EGAGIVV 46 (471)
T ss_pred ccccCeEEEEEcCc-----cHHHHHHHHHHHhhCcCc--------CcceEEE
Confidence 38899997777532 356666789999999994 7899986
No 401
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=62.39 E-value=13 Score=44.05 Aligned_cols=68 Identities=13% Similarity=-0.025 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
....+|....++||++|.|---+-.-|++ ..-|..+.+. .++||+.-+.|-+..+|..|.+
T Consensus 62 d~~~~A~~y~~~GA~aISVlTe~~~F~Gs------------~~~l~~v~~~-------v~~PvL~KDFIid~~QI~ea~~ 122 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVLTDQSYFGGS------------LEDLKSVSSE-------LKIPVLRKDFILDEIQIREARA 122 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEEcCCCcCCCC------------HHHHHHHHHh-------cCCCEEeccccCCHHHHHHHHH
Confidence 45668888999999999774321111111 2345555554 2589999999999999999999
Q ss_pred cCCCccc
Q 000265 1245 LGAEEFG 1251 (1760)
Q Consensus 1245 LGAdaVg 1251 (1760)
+|||+|-
T Consensus 123 ~GADavL 129 (247)
T PRK13957 123 FGASAIL 129 (247)
T ss_pred cCCCEEE
Confidence 9999993
No 402
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=61.52 E-value=7.1 Score=50.40 Aligned_cols=40 Identities=28% Similarity=0.339 Sum_probs=30.5
Q ss_pred CCCCceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 111 DKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 111 E~DaCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
-|+.|||..|...+. .+....+.+|..|+|||= |+|||.+
T Consensus 30 ~~emCGI~Gi~~~~~----~~~~~~~~gL~~LqHRGq--------dsaGIa~ 69 (500)
T PRK07349 30 PEEACGVFGVYAPGE----EVAKLTYFGLYALQHRGQ--------ESAGIAT 69 (500)
T ss_pred cccCCeEEEEECCCc----CHHHHHHHHHHHhcccCc--------CcceEEE
Confidence 488999977775322 345556789999999993 7899987
No 403
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=61.36 E-value=38 Score=40.67 Aligned_cols=70 Identities=17% Similarity=0.094 Sum_probs=43.3
Q ss_pred HHHH-cCCCEEEEecCCCCCCCCccccccccCCCHHH---HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHH----HHH
Q 000265 1172 GVVK-GHADHVLISGHDGGTGASRWTGIKNAGLPWEL---GLAETHQTLVANDLRGRTILQTDGQLKTGRDVA----IAA 1243 (1760)
Q Consensus 1172 ~aak-aGAD~IvIsG~~GGTGas~~~si~~~GlP~~~---~Laev~q~L~~~glr~rV~LiadGGIrtG~DVa----KAl 1243 (1760)
.+.+ .|+++|.+-|+.|-.. -+..++ .+..+.+. ..++++|++-=|-.+-+|++ .|-
T Consensus 32 ~l~~~~Gv~gi~v~GstGE~~----------~Ls~eEr~~~~~~~~~~-----~~~~~~viagvg~~~t~~ai~~a~~a~ 96 (293)
T PRK04147 32 FNIEKQGIDGLYVGGSTGEAF----------LLSTEEKKQVLEIVAEE-----AKGKVKLIAQVGSVNTAEAQELAKYAT 96 (293)
T ss_pred HHHhcCCCCEEEECCCccccc----------cCCHHHHHHHHHHHHHH-----hCCCCCEEecCCCCCHHHHHHHHHHHH
Confidence 3455 8999999988865421 222222 22333333 23578888855545556554 457
Q ss_pred HcCCCccccchhH
Q 000265 1244 LLGAEEFGFSTAP 1256 (1760)
Q Consensus 1244 aLGAdaVg~GTa~ 1256 (1760)
.+|||++.+-+++
T Consensus 97 ~~Gad~v~v~~P~ 109 (293)
T PRK04147 97 ELGYDAISAVTPF 109 (293)
T ss_pred HcCCCEEEEeCCc
Confidence 8999999877654
No 404
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=61.20 E-value=8.4 Score=49.53 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=31.7
Q ss_pred CCCCCCceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 109 KFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 109 ~~E~DaCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
+.-|+.|||..+...+ .+....+.+|..|+|||= |+|||.+
T Consensus 16 ~~~~~mCGI~Gi~~~~-----~~~~~~~~gL~~LqHRG~--------dsaGia~ 56 (479)
T PRK09123 16 DTLREECGVFGILGHP-----DAAALTALGLHALQHRGQ--------EAAGIVS 56 (479)
T ss_pred CCccccCeEEEEEcCc-----chHHHHHHHHHHhcCcCc--------cCCEEEE
Confidence 3458999997777532 356677788999999994 7899987
No 405
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=61.06 E-value=65 Score=38.11 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=60.7
Q ss_pred HHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcC-CCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCC
Q 000265 1142 QLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGH-ADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAND 1220 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaG-AD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~g 1220 (1760)
+.|..|+.. +.++.+-++-+..=...|..++++| +++|.. +-|+ +++.|.-....+.++++.+..+
T Consensus 103 ~ai~~L~~~--GI~vn~T~vfs~~Qa~~aa~A~~aG~a~yisp--fvgR--------~dd~g~D~~~~i~~i~~i~~~~- 169 (236)
T TIGR02134 103 PLIQKLSAD--GITLNVTALTTIEQVEKVCQSFTDGVPGIVSV--FAGR--------IADTGVDPEPHMREALEIVAQK- 169 (236)
T ss_pred HHHHHHHHC--CCcEEeehcCCHHHHHHHHHHHhCCCCeEEEE--ecch--------hhhcCCCcHHHHHHHHHHHHhC-
Confidence 335555544 4455444432221112223355688 587744 2222 3455555556777887777653
Q ss_pred CCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHH
Q 000265 1221 LRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLIT 1259 (1760)
Q Consensus 1221 lr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~A 1259 (1760)
.+..|+++ -+|+..+|..++.+||+.+-+.-..+-.
T Consensus 170 --~~tkILaA-S~R~~~~v~~a~~~Gad~vTvp~~v~~~ 205 (236)
T TIGR02134 170 --PGVELLWA-SPRELFNIIQADRIGCDIITCAHDILAK 205 (236)
T ss_pred --CCcEEEEE-ccCCHHHHHHHHHcCCCEEECCHHHHHH
Confidence 24566554 5999999999999999998666655544
No 406
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=60.83 E-value=23 Score=42.20 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc--CCCccccchhHHH
Q 000265 1206 ELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL--GAEEFGFSTAPLI 1258 (1760)
Q Consensus 1206 ~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL--GAdaVg~GTa~L~ 1258 (1760)
+..+.++.+. .++||||+||+.+-.|+.++..+ |...+-+|.++..
T Consensus 190 lel~~~l~~~-------~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 190 EELVSKLGEW-------SPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHHHHHhh-------CCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 4455555443 26999999999999999988666 5566778887654
No 407
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=60.75 E-value=31 Score=41.89 Aligned_cols=93 Identities=17% Similarity=0.182 Sum_probs=56.3
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEE-cCCcCCHHHHH---HHHHcC
Q 000265 1171 SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQT-DGQLKTGRDVA---IAALLG 1246 (1760)
Q Consensus 1171 ~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~Lia-dGGIrtG~DVa---KAlaLG 1246 (1760)
....+.|+|+|++-|..|-. +..+.+.- ...+..+.++ +.+|+|||+ .|+..|-.-+. .|-.+|
T Consensus 32 ~~li~~Gv~gi~~~GttGE~---~~Ls~eEr----~~v~~~~v~~-----~~grvpviaG~g~~~t~eai~lak~a~~~G 99 (299)
T COG0329 32 EFLIAAGVDGLVVLGTTGES---PTLTLEER----KEVLEAVVEA-----VGGRVPVIAGVGSNSTAEAIELAKHAEKLG 99 (299)
T ss_pred HHHHHcCCCEEEECCCCccc---hhcCHHHH----HHHHHHHHHH-----HCCCCcEEEecCCCcHHHHHHHHHHHHhcC
Confidence 33557799999998875542 21111100 1223333343 345899888 55554444333 567899
Q ss_pred CCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHH
Q 000265 1247 AEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEE 1305 (1760)
Q Consensus 1247 AdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~E 1305 (1760)
||++.+-++... ...++++..+|..+++.
T Consensus 100 ad~il~v~PyY~------------------------------k~~~~gl~~hf~~ia~a 128 (299)
T COG0329 100 ADGILVVPPYYN------------------------------KPSQEGLYAHFKAIAEA 128 (299)
T ss_pred CCEEEEeCCCCc------------------------------CCChHHHHHHHHHHHHh
Confidence 999988876544 23478888888877744
No 408
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=60.73 E-value=41 Score=41.70 Aligned_cols=114 Identities=17% Similarity=0.083 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcc------ccC-----HHH---HHHHHHHcCCCEEEEecC--CCCCCCC---ccc
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVS------EAG-----VGV---IASGVVKGHADHVLISGH--DGGTGAS---RWT 1196 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~------~~G-----vg~---iA~~aakaGAD~IvIsG~--~GGTGas---~~~ 1196 (1760)
.++++.+++++.+.. +.|+++=..+ ..+ ... .|..+++.|||+|.+.=. .++-... .-.
T Consensus 177 ml~~l~~i~~ea~~~--GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~ 254 (348)
T PRK09250 177 QIEEISEAFEEAHEL--GLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTD 254 (348)
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhccccc
Confidence 467778877777664 7888762221 111 122 344588999999988322 1111000 000
Q ss_pred cccccCCCH---HHHHHHHHHHHHhCCCCCceEEEEcCCcCCHH-H----HHHH---HHcCCCccccchh
Q 000265 1197 GIKNAGLPW---ELGLAETHQTLVANDLRGRTILQTDGQLKTGR-D----VAIA---ALLGAEEFGFSTA 1255 (1760)
Q Consensus 1197 si~~~GlP~---~~~Laev~q~L~~~glr~rV~LiadGGIrtG~-D----VaKA---laLGAdaVg~GTa 1255 (1760)
.-..-.+++ ...+..+.+.+ .-+++||+.+||=+++. | |..+ +..||.++.+||-
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~ac----~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRN 320 (348)
T PRK09250 255 DRVYSKLTSDHPIDLVRYQVANC----YMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRK 320 (348)
T ss_pred ccccccccccchHHHHHHHHHhh----ccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchh
Confidence 000011121 22333333332 22368999999999643 2 4456 8889999999985
No 409
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=60.32 E-value=50 Score=40.74 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccccC--HHHHHHHHHHcCC--CEEEEecCCCCCCCCccccccccCCCHHHHHHH
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSEAG--VGVIASGVVKGHA--DHVLISGHDGGTGASRWTGIKNAGLPWELGLAE 1211 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~G--vg~iA~~aakaGA--D~IvIsG~~GGTGas~~~si~~~GlP~~~~Lae 1211 (1760)
++|+...++ |+.+|+ .+.|-...... ...-+..+.++|+ |+|.||-..|.. ......+.+
T Consensus 70 ~~e~~~~~~---r~~~~~-~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~------------~~~~e~I~~ 133 (326)
T PRK05458 70 DPEARIPFI---KDMHEQ-GLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHS------------DSVINMIQH 133 (326)
T ss_pred CHHHHHHHH---Hhcccc-ccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCch------------HHHHHHHHH
Confidence 567766665 666644 33443322221 1234566889955 999998875321 112223344
Q ss_pred HHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000265 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
+.+.. ..++ +..|-+.|..++..++.+|||++-+|
T Consensus 134 ir~~~------p~~~-vi~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 134 IKKHL------PETF-VIAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHhhC------CCCe-EEEEecCCHHHHHHHHHcCcCEEEEC
Confidence 43321 1244 45566889999999999999997655
No 410
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=60.19 E-value=95 Score=38.17 Aligned_cols=105 Identities=14% Similarity=0.085 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccc--cCHHHHHHHHHHcCCCEEEEecC--CCCCCCCccccccccCCCHHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSE--AGVGVIASGVVKGHADHVLISGH--DGGTGASRWTGIKNAGLPWELGLAET 1212 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~--~Gvg~iA~~aakaGAD~IvIsG~--~GGTGas~~~si~~~GlP~~~~Laev 1212 (1760)
++.+.+.|..+++.. +.||++++... ......|..+.++|+|+|.|--. .+..+. .|.-....+.++
T Consensus 86 ~d~~~~~i~~~~~~~-~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~--------~g~~~~~~~~ei 156 (334)
T PRK07565 86 PEEYLELIRRAKEAV-DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDI--------SGAEVEQRYLDI 156 (334)
T ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCC--------ccccHHHHHHHH
Confidence 567777787777664 68999998432 12335667788899999998321 111110 011111223344
Q ss_pred HHHHHhCCCCCceEEEE--cCCcCCHHHHHHHH-HcCCCccccc
Q 000265 1213 HQTLVANDLRGRTILQT--DGQLKTGRDVAIAA-LLGAEEFGFS 1253 (1760)
Q Consensus 1213 ~q~L~~~glr~rV~Lia--dGGIrtG~DVaKAl-aLGAdaVg~G 1253 (1760)
.+.+++. + ++||++ .+++.+-.++++++ ..|||+|-+.
T Consensus 157 l~~v~~~-~--~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 157 LRAVKSA-V--SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred HHHHHhc-c--CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 4444332 1 477776 45555667888765 5899998663
No 411
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=60.13 E-value=51 Score=41.54 Aligned_cols=110 Identities=17% Similarity=0.081 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcc--c-cCHHHHHHHHHHcCCCEEEEec--CCC----CCCCCccccccccCCCHH
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVS--E-AGVGVIASGVVKGHADHVLISG--HDG----GTGASRWTGIKNAGLPWE 1206 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~--~-~Gvg~iA~~aakaGAD~IvIsG--~~G----GTGas~~~si~~~GlP~~ 1206 (1760)
.++.+.+.|..+|+.+|+.||++=+.. . .....+|..+.++|||+|.+.= -.+ +.|.. .|. ..
T Consensus 96 g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~-------~gq-~~ 167 (385)
T PLN02495 96 PFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAA-------VGQ-DC 167 (385)
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchh-------hcc-CH
Confidence 466777778888887788899998732 1 2344577788899999998731 111 11111 111 12
Q ss_pred HHHHHHHHHHHhCCCCCceEEEE--cCCcCCHHHHHH-HHHcCCCccccchhH
Q 000265 1207 LGLAETHQTLVANDLRGRTILQT--DGQLKTGRDVAI-AALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1207 ~~Laev~q~L~~~glr~rV~Lia--dGGIrtG~DVaK-AlaLGAdaVg~GTa~ 1256 (1760)
..+.++.+.++.. .++||++ +--+.+-.++++ +...|||+|-+--.+
T Consensus 168 e~~~~i~~~Vk~~---~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 168 DLLEEVCGWINAK---ATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred HHHHHHHHHHHHh---hcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 4566666665542 2467766 555666777887 667899998765443
No 412
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=59.95 E-value=7.7 Score=44.53 Aligned_cols=35 Identities=37% Similarity=0.465 Sum_probs=26.8
Q ss_pred ceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 115 CGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
|||..+...+ ...+..+.+|..|+|||- |++||.+
T Consensus 1 CGI~G~~~~~-----~~~~~~~~~l~~l~hRG~--------d~~Gi~~ 35 (215)
T cd00714 1 CGIVGYIGKR-----EAVDILLEGLKRLEYRGY--------DSAGIAV 35 (215)
T ss_pred CEEEEEEcCc-----cHHHHHHHHHHHHhccCc--------CcceEEE
Confidence 9997777532 234667789999999994 8999986
No 413
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=59.26 E-value=8.9 Score=49.19 Aligned_cols=41 Identities=32% Similarity=0.348 Sum_probs=31.2
Q ss_pred CCCCceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 111 DKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 111 E~DaCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
-|+.|||..+...+. -.+....+.+|..|+|||= |+|||.+
T Consensus 11 ~~~mCGI~Gi~~~~~---~~~~~~~~~gL~~LqhRG~--------dsaGIa~ 51 (469)
T PRK05793 11 FKEECGVFGVFSKNN---IDVASLTYYGLYALQHRGQ--------ESAGIAV 51 (469)
T ss_pred cCcCCeEEEEEcCCC---ccHHHHHHHHHHHHhhhCC--------CcceEEE
Confidence 488999977764332 1356677789999999993 8999986
No 414
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=59.22 E-value=48 Score=39.77 Aligned_cols=51 Identities=8% Similarity=0.158 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHH-HHHHHHcCCCEEEEe
Q 000265 1134 IYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVI-ASGVVKGHADHVLIS 1184 (1760)
Q Consensus 1134 iySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvIs 1184 (1760)
.-+|+++.++|..||+..|+.||.+-.=-..|.+.. +..+.++|||.|..+
T Consensus 174 ~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t 225 (274)
T cd07938 174 VATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSS 225 (274)
T ss_pred ccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEe
Confidence 346789999999999998889999987545577653 456889999998643
No 415
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=58.78 E-value=29 Score=40.07 Aligned_cols=76 Identities=11% Similarity=-0.009 Sum_probs=48.2
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCcc
Q 000265 1171 SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEF 1250 (1760)
Q Consensus 1171 ~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaV 1250 (1760)
..+.+.|+|+|.++-- --|-.-+. .....| ...+.++.+.+ .++||+|-|||. ..++...+..||++|
T Consensus 116 ~~A~~~gaDYi~lgpv-f~T~tK~~-~~~~~G---~~~l~~~~~~~------~~~PV~AiGGI~-~~ni~~l~~~Ga~Gi 183 (211)
T PRK03512 116 DVALAARPSYIALGHV-FPTQTKQM-PSAPQG---LAQLARHVERL------ADYPTVAIGGIS-LERAPAVLATGVGSI 183 (211)
T ss_pred HHHhhcCCCEEEECCc-cCCCCCCC-CCCCCC---HHHHHHHHHhc------CCCCEEEECCCC-HHHHHHHHHcCCCEE
Confidence 4566789999999532 11110000 001112 23344443321 258999999995 899999999999999
Q ss_pred ccchhHHH
Q 000265 1251 GFSTAPLI 1258 (1760)
Q Consensus 1251 g~GTa~L~ 1258 (1760)
.+-++++-
T Consensus 184 Avisai~~ 191 (211)
T PRK03512 184 AVVSAITQ 191 (211)
T ss_pred EEhhHhhC
Confidence 99888664
No 416
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=58.56 E-value=21 Score=42.53 Aligned_cols=60 Identities=18% Similarity=0.382 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHH-HHHHHHcCCCEEE--EecCCCCCCCCc
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVI-ASGVVKGHADHVL--ISGHDGGTGASR 1194 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i-A~~aakaGAD~Iv--IsG~~GGTGas~ 1194 (1760)
.+|+++.+++..+|+..|+.||.+-.=...|.+.. +..+.++|||.|. +.|-+.|+|.++
T Consensus 177 ~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~GlGeraGn~~ 239 (273)
T cd07941 177 TLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGYGERCGNAN 239 (273)
T ss_pred CCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEecccccccccccc
Confidence 45788999999999988888998887545576653 4558899999986 557766665543
No 417
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=58.10 E-value=53 Score=39.33 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=43.8
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCccccccccCCCHH---HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHH----HHH
Q 000265 1171 SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE---LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVA----IAA 1243 (1760)
Q Consensus 1171 ~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~---~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVa----KAl 1243 (1760)
..+.+.|+|+|.+-|+.|-.. -++.+ ..+..+.+. ..++++|++.=|=.+-+|++ .|.
T Consensus 26 ~~l~~~Gv~Gi~~~GstGE~~----------~Ls~~Er~~~~~~~~~~-----~~~~~~vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 26 DFQIENGTDAIVVVGTTGESP----------TLSHEEHKKVIEFVVDL-----VNGRVPVIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred HHHHHcCCCEEEECccCcccc----------cCCHHHHHHHHHHHHHH-----hCCCCeEEEeCCCccHHHHHHHHHHHH
Confidence 345678999999988765421 12222 233333333 23578888755544555544 456
Q ss_pred HcCCCccccchhHH
Q 000265 1244 LLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L 1257 (1760)
.+|||+|.+..++.
T Consensus 91 ~~Gad~v~v~pP~y 104 (285)
T TIGR00674 91 DVGADGFLVVTPYY 104 (285)
T ss_pred HcCCCEEEEcCCcC
Confidence 78999998876543
No 418
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=57.99 E-value=49 Score=44.87 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHH
Q 000265 1165 GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244 (1760)
Q Consensus 1165 Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAla 1244 (1760)
....++..+.+.|+|+|+|++.++.+ ....+++.+.|++.| +++|.|++.|.+. ..+......
T Consensus 621 s~e~~v~aa~~~~a~ivvlcs~d~~~---------------~e~~~~l~~~Lk~~G-~~~v~vl~GG~~~-~~~~~~l~~ 683 (714)
T PRK09426 621 TPEEAARQAVENDVHVVGVSSLAAGH---------------KTLVPALIEALKKLG-REDIMVVVGGVIP-PQDYDFLYE 683 (714)
T ss_pred CHHHHHHHHHHcCCCEEEEeccchhh---------------HHHHHHHHHHHHhcC-CCCcEEEEeCCCC-hhhHHHHHh
Confidence 45677888999999999999987653 234577888898888 4468888777765 455666778
Q ss_pred cCCCcc
Q 000265 1245 LGAEEF 1250 (1760)
Q Consensus 1245 LGAdaV 1250 (1760)
+|+|.+
T Consensus 684 aGvD~~ 689 (714)
T PRK09426 684 AGVAAI 689 (714)
T ss_pred CCCCEE
Confidence 899976
No 419
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=57.75 E-value=83 Score=36.92 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEec-CCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISG-HDGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG-~~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
.+...|..+|+. ++..+|=+-+.+.+..+.--+. -+|.|+|=. ..|-+|-+- +. -...=|+++++.+.
T Consensus 97 ~~~r~i~~Ik~~--G~kaGv~lnP~Tp~~~i~~~l~--~vD~VllMsVnPGfgGQ~F---i~----~~l~Ki~~lr~~~~ 165 (220)
T COG0036 97 HIHRTIQLIKEL--GVKAGLVLNPATPLEALEPVLD--DVDLVLLMSVNPGFGGQKF---IP----EVLEKIRELRAMID 165 (220)
T ss_pred CHHHHHHHHHHc--CCeEEEEECCCCCHHHHHHHHh--hCCEEEEEeECCCCccccc---CH----HHHHHHHHHHHHhc
Confidence 455667777776 6667776666655554433233 479998732 223222221 11 12333455555554
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
+ +..+.|.+||||. -.-+-.+.+.|||.+-.|++
T Consensus 166 ~---~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 166 E---RLDILIEVDGGIN-LETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred c---cCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEE
Confidence 3 2378899999995 45567777799999999994
No 420
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=57.65 E-value=52 Score=39.49 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=41.9
Q ss_pred HHHHHc-CCCEEEEecCCCCCCCCccccccccCCCHH---HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHH----HH
Q 000265 1171 SGVVKG-HADHVLISGHDGGTGASRWTGIKNAGLPWE---LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVA----IA 1242 (1760)
Q Consensus 1171 ~~aaka-GAD~IvIsG~~GGTGas~~~si~~~GlP~~---~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVa----KA 1242 (1760)
..+.+. |+++|.+-|+.|-... ++.+ ..+..+.+. +.++++||+-=|--+-.|++ .|
T Consensus 28 ~~l~~~~Gv~gi~~~GstGE~~~----------Lt~~Er~~~~~~~~~~-----~~~~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 28 DYLIEKQGVDGLYVNGSTGEGFL----------LSVEERKQIAEIVAEA-----AKGKVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred HHHHhcCCCCEEEECcCCcCccc----------CCHHHHHHHHHHHHHH-----hCCCCeEEeccCCCCHHHHHHHHHHH
Confidence 345567 9999999888664321 2222 223333333 23579998833323334433 56
Q ss_pred HHcCCCccccchhH
Q 000265 1243 ALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1243 laLGAdaVg~GTa~ 1256 (1760)
..+|||++.+-.++
T Consensus 93 ~~~Gad~v~~~~P~ 106 (288)
T cd00954 93 EELGYDAISAITPF 106 (288)
T ss_pred HHcCCCEEEEeCCC
Confidence 78999999876653
No 421
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=57.61 E-value=1.1e+02 Score=36.98 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhCCC-CceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHH--
Q 000265 1137 IEDLAQLIYDLKNANPG-ARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETH-- 1213 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~-~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~-- 1213 (1760)
.+.+...+..+.+.. + +||.+.+-....+ .....+.++|++.|.+++.. +|...-+..+.
T Consensus 58 ~~~~~~~~~~~a~~~-~~vpv~lhlDH~~~~-e~i~~ai~~Gf~sVmid~s~---------------l~~~eni~~t~~v 120 (282)
T TIGR01859 58 YKMAVAMVKTLIERM-SIVPVALHLDHGSSY-ESCIKAIKAGFSSVMIDGSH---------------LPFEENLALTKKV 120 (282)
T ss_pred HHHHHHHHHHHHHHC-CCCeEEEECCCCCCH-HHHHHHHHcCCCEEEECCCC---------------CCHHHHHHHHHHH
Confidence 677888888887776 5 8999998543223 34566889999999998862 24444443333
Q ss_pred -HHHHhCCCCCceEEEEcCC-----------cCCHHHHHHHHH-cCCCccc--cchh
Q 000265 1214 -QTLVANDLRGRTILQTDGQ-----------LKTGRDVAIAAL-LGAEEFG--FSTA 1255 (1760)
Q Consensus 1214 -q~L~~~glr~rV~LiadGG-----------IrtG~DVaKAla-LGAdaVg--~GTa 1255 (1760)
+.+...|+.....|=..|| ..+..++.++.. .|+|.++ +||.
T Consensus 121 ~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~ 177 (282)
T TIGR01859 121 VEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTS 177 (282)
T ss_pred HHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCcc
Confidence 3444445422222222222 568899999996 9999777 5663
No 422
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=57.14 E-value=94 Score=37.64 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=50.0
Q ss_pred HHHcCCCEEEEec-CCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcC--CcCCHHHHHHHHHcCCCc
Q 000265 1173 VVKGHADHVLISG-HDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDG--QLKTGRDVAIAALLGAEE 1249 (1760)
Q Consensus 1173 aakaGAD~IvIsG-~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadG--GIrtG~DVaKAlaLGAda 1249 (1760)
+.+.|+|.+-++- .-=||- + ....+ ....|.++++.+ ++||++-| || +..++.+++..|++.
T Consensus 162 ~~~tg~DyLAvaiG~~hg~~--~----~~~~l-~~~~L~~i~~~~-------~iPlV~hG~SGI-~~e~~~~~i~~G~~k 226 (281)
T PRK06806 162 AEETDVDALAVAIGNAHGMY--N----GDPNL-RFDRLQEINDVV-------HIPLVLHGGSGI-SPEDFKKCIQHGIRK 226 (281)
T ss_pred HHhhCCCEEEEccCCCCCCC--C----CCCcc-CHHHHHHHHHhc-------CCCEEEECCCCC-CHHHHHHHHHcCCcE
Confidence 3456999998842 211221 1 00111 235677777652 58999999 87 567899999999999
Q ss_pred cccchhHHHHh
Q 000265 1250 FGFSTAPLITL 1260 (1760)
Q Consensus 1250 Vg~GTa~L~Al 1260 (1760)
|.+.|.++.+.
T Consensus 227 inv~T~i~~a~ 237 (281)
T PRK06806 227 INVATATFNSV 237 (281)
T ss_pred EEEhHHHHHHH
Confidence 99999988753
No 423
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=57.07 E-value=29 Score=40.11 Aligned_cols=67 Identities=10% Similarity=-0.065 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCCEEEEe--cCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHc
Q 000265 1168 VIASGVVKGHADHVLIS--GHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALL 1245 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIs--G~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaL 1245 (1760)
+-+..+.++|+|.|.+= +.-|| ..++.+|.. .-..++++..|||.- .++..-+..
T Consensus 112 tEi~~A~~~Ga~~vKlFPA~~~GG-------------~~yikal~~---------plp~i~~~ptGGV~~-~N~~~~l~a 168 (204)
T TIGR01182 112 SEIMLALELGITALKLFPAEVSGG-------------VKMLKALAG---------PFPQVRFCPTGGINL-ANVRDYLAA 168 (204)
T ss_pred HHHHHHHHCCCCEEEECCchhcCC-------------HHHHHHHhc---------cCCCCcEEecCCCCH-HHHHHHHhC
Confidence 34567999999999882 21111 222222221 224699999999965 899999999
Q ss_pred CCCccccchhHH
Q 000265 1246 GAEEFGFSTAPL 1257 (1760)
Q Consensus 1246 GAdaVg~GTa~L 1257 (1760)
||.+|++|+...
T Consensus 169 Ga~~vg~Gs~L~ 180 (204)
T TIGR01182 169 PNVACGGGSWLV 180 (204)
T ss_pred CCEEEEEChhhc
Confidence 999999999643
No 424
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=57.04 E-value=8.7 Score=50.99 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=30.6
Q ss_pred CCCCceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 111 DKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 111 E~DaCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
..+.|||..+...+ .+....+.+|.+|+|||= |++||.+
T Consensus 21 ~~~MCGI~G~~~~~-----~~~~~~~~~l~~L~hRG~--------ds~Gia~ 59 (640)
T PTZ00295 21 YDYCCGIVGYLGNE-----DASKILLEGIEILQNRGY--------DSCGIST 59 (640)
T ss_pred cccCCeEEEEEcCc-----chHHHHHHHHHHHHhcCC--------CeeEEEE
Confidence 34699997666422 467778899999999994 8999987
No 425
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=56.95 E-value=14 Score=42.44 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=30.6
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHH
Q 000265 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~ 1258 (1760)
.|.=+++||+.|+.|.+-.+-||.|+|-+|+..+-
T Consensus 209 PVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 209 PVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred ceEEecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence 35557999999999999999999999999987554
No 426
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=56.83 E-value=85 Score=38.34 Aligned_cols=90 Identities=13% Similarity=0.039 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccc-cCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHH
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSE-AGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETH 1213 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~-~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~ 1213 (1760)
.+++.+.+.|.++|+.+ ++|+.|-++.. .........+.+.|+++|.+++ |.|. +..
T Consensus 45 ~~~~~l~~~i~~~~~~t-~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~----------------g~p~-----~~i 102 (307)
T TIGR03151 45 APPDVVRKEIRKVKELT-DKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGA----------------GNPG-----KYI 102 (307)
T ss_pred CCHHHHHHHHHHHHHhc-CCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcC----------------CCcH-----HHH
Confidence 35789999999999876 78998887542 2333444557889999998732 2242 233
Q ss_pred HHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCcccc
Q 000265 1214 QTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGF 1252 (1760)
Q Consensus 1214 q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~ 1252 (1760)
+.++..| +.|++ -+.|-.++.++..+|||.+.+
T Consensus 103 ~~lk~~g----~~v~~--~v~s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 103 PRLKENG----VKVIP--VVASVALAKRMEKAGADAVIA 135 (307)
T ss_pred HHHHHcC----CEEEE--EcCCHHHHHHHHHcCCCEEEE
Confidence 4444443 45554 557888999999999999865
No 427
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=56.82 E-value=52 Score=38.20 Aligned_cols=92 Identities=27% Similarity=0.385 Sum_probs=57.5
Q ss_pred HHHHHHHHhCCCCceEEEEcccc-CHHHHHHHHHHcCCCEEEEecC----CCCCCCCccccccccCCCHHHHHHHHHHHH
Q 000265 1142 QLIYDLKNANPGARISVKLVSEA-GVGVIASGVVKGHADHVLISGH----DGGTGASRWTGIKNAGLPWELGLAETHQTL 1216 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~-Gvg~iA~~aakaGAD~IvIsG~----~GGTGas~~~si~~~GlP~~~~Laev~q~L 1216 (1760)
+.|..||..+ +.|| +|-++.. ............-+|.+++|.. .||||-+ . .|.. |...
T Consensus 88 ~~~~~l~~~~-~~~v-~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~-----f----DW~~-l~~~---- 151 (208)
T COG0135 88 EYIDQLKEEL-GVPV-IKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQT-----F----DWNL-LPKL---- 151 (208)
T ss_pred HHHHHHHhhc-CCce-EEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcE-----E----CHHH-hccc----
Confidence 3477787765 4555 3433321 1122334466778999999986 4666543 1 3321 1111
Q ss_pred HhCCCCCceEEEEcCCcCCHHHHHHHHHcCC-Cccccchh
Q 000265 1217 VANDLRGRTILQTDGQLKTGRDVAIAALLGA-EEFGFSTA 1255 (1760)
Q Consensus 1217 ~~~glr~rV~LiadGGIrtG~DVaKAlaLGA-daVg~GTa 1255 (1760)
+...+++.+||| |+..|..|+.++. .+|=+.+.
T Consensus 152 -----~~~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSG 185 (208)
T COG0135 152 -----RLSKPVMLAGGL-NPDNVAEAIALGPPYGVDVSSG 185 (208)
T ss_pred -----cccCCEEEECCC-CHHHHHHHHHhcCCceEEeccc
Confidence 224679999999 8999999999998 77766654
No 428
>PRK03903 transaldolase; Provisional
Probab=56.76 E-value=1.6e+02 Score=35.77 Aligned_cols=56 Identities=5% Similarity=-0.082 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCcCC----HHHHHHHHHcCCCccccchhHHHHh
Q 000265 1205 WELGLAETHQTLVANDLRGRTILQTDGQLKT----GRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1205 ~~~~Laev~q~L~~~glr~rV~LiadGGIrt----G~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
.+....++++.+..+|.+..=.|+|+=|+++ ...++.++..|++.+-+.-..+-++
T Consensus 158 gIa~a~~~y~~~~~~g~~~~riL~AStg~Kn~~~~~~~yv~~L~~g~~v~T~P~~tl~a~ 217 (274)
T PRK03903 158 GIMNATKCYNQIEQHANKNIRTLFASTGVKGDDLPKDYYIKELLFKNSINTAPLDTIEAF 217 (274)
T ss_pred HHHHHHHHHHHHHHcCCCCcEEEEEecccCCCCCChHHHHHHHhCCCCeeeCCHHHHHHH
Confidence 4555667777777776665567899999999 9999999999998876665555543
No 429
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=56.46 E-value=62 Score=37.79 Aligned_cols=90 Identities=16% Similarity=0.077 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCCCceEE--EEccccCHH-HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000265 1142 QLIYDLKNANPGARISV--KLVSEAGVG-VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~V--Klv~~~Gvg-~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
+.|.+||+.+|+.+|.+ |+ .+++ +++..+.++|||.+++-++ ||. ..+.++.+.+..
T Consensus 45 ~~i~~lk~~~~~~~IflDlKl---~DIp~tv~~~~~~~Gad~~tv~~~-~g~----------------~~i~~a~~~a~~ 104 (218)
T PRK13305 45 GAVKALREQCPDKIIVADWKV---ADAGETLAQQAFGAGANWMTIICA-APL----------------ATVEKGHAVAQR 104 (218)
T ss_pred HHHHHHHHhCCCCEEEEEeec---ccChHHHHHHHHHcCCCEEEEecC-CCH----------------HHHHHHHHHHHh
Confidence 56889999988888875 76 4666 6777888999999998877 431 245566664443
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccch
Q 000265 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFST 1254 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GT 1254 (1760)
.+-...+.+++. .|..+.-..-.+|.+.+.+-.
T Consensus 105 ~~~~~~~~llgV---~t~~~~~~l~~~g~~~~v~h~ 137 (218)
T PRK13305 105 CGGEIQIELFGN---WTLDDARDWHRIGVRQAIYHR 137 (218)
T ss_pred cCCcccceEEEe---cCcchHHHHHHcCCHHHHHHH
Confidence 232223556665 244444444467776444433
No 430
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=56.46 E-value=50 Score=39.77 Aligned_cols=88 Identities=18% Similarity=0.129 Sum_probs=53.1
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHH---HHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHH----HHH
Q 000265 1171 SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWEL---GLAETHQTLVANDLRGRTILQTDGQLKTGRDVA----IAA 1243 (1760)
Q Consensus 1171 ~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~---~Laev~q~L~~~glr~rV~LiadGGIrtG~DVa----KAl 1243 (1760)
..+.+.|+|+|.+-|+.|-.- -+..++ .+..+.+. +.++++|++-=|- +-.+.+ .|.
T Consensus 33 ~~l~~~Gv~gi~v~GstGE~~----------~Lt~eEr~~v~~~~~~~-----~~g~~pvi~gv~~-~t~~ai~~a~~a~ 96 (296)
T TIGR03249 33 EWLLGYGLEALFAAGGTGEFF----------SLTPAEYEQVVEIAVST-----AKGKVPVYTGVGG-NTSDAIEIARLAE 96 (296)
T ss_pred HHHHhcCCCEEEECCCCcCcc----------cCCHHHHHHHHHHHHHH-----hCCCCcEEEecCc-cHHHHHHHHHHHH
Confidence 345678999999988866431 122322 22333333 3457888876553 444443 346
Q ss_pred HcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHH
Q 000265 1244 LLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAE 1304 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ 1304 (1760)
.+|||++.+-.++.. ...++++.+||..+.+
T Consensus 97 ~~Gadav~~~pP~y~------------------------------~~s~~~i~~~f~~v~~ 127 (296)
T TIGR03249 97 KAGADGYLLLPPYLI------------------------------NGEQEGLYAHVEAVCE 127 (296)
T ss_pred HhCCCEEEECCCCCC------------------------------CCCHHHHHHHHHHHHh
Confidence 689999877554322 1246888888887764
No 431
>PRK12346 transaldolase A; Provisional
Probab=55.79 E-value=1.1e+02 Score=37.71 Aligned_cols=78 Identities=9% Similarity=0.020 Sum_probs=54.7
Q ss_pred HHHHcCCCEEEE-----ec----CCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000265 1172 GVVKGHADHVLI-----SG----HDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1172 ~aakaGAD~IvI-----sG----~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
.|+++||++|.. +. +.+... ....+-|....+.++++.++..|.. +.+....+|+..+|.
T Consensus 165 ~aa~AGa~~ISPfVgRi~d~~~~~~~~~~------~~~~~~~Gv~~v~~i~~~~k~~~~~---T~Vm~ASfRn~~qi~-- 233 (316)
T PRK12346 165 ACAEAGVFLISPFVGRIYDWYQARKPMDP------YVVEEDPGVKSVRNIYDYYKQHRYE---TIVMGASFRRTEQIL-- 233 (316)
T ss_pred HHHHcCCCEEEecccHHHHhhhhcccccc------ccccCCChHHHHHHHHHHHHHcCCC---cEEEecccCCHHHHH--
Confidence 488899998853 11 111111 1112567788899999998887653 456667789999999
Q ss_pred HHcCCCccccchhHHHHh
Q 000265 1243 ALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1243 laLGAdaVg~GTa~L~Al 1260 (1760)
.+.|+|.+-+.-..|-.|
T Consensus 234 alaG~d~lTi~p~ll~~L 251 (316)
T PRK12346 234 ALAGCDRLTISPNLLKEL 251 (316)
T ss_pred HHhCCCEEeCCHHHHHHH
Confidence 567999998888877766
No 432
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=55.67 E-value=48 Score=39.16 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHH-HHHHHHcCCCEEEE--ecCCCCCCC
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVI-ASGVVKGHADHVLI--SGHDGGTGA 1192 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvI--sG~~GGTGa 1192 (1760)
..|+++.++|..+|+..| .||.+..=-..|.+.. +..+.++|||.|.. .|.++++|.
T Consensus 165 ~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~~aGN 224 (259)
T cd07939 165 LDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGERAGN 224 (259)
T ss_pred CCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccccccC
Confidence 357889999999999886 7888876444576653 45588999999865 355555544
No 433
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=54.89 E-value=10 Score=48.46 Aligned_cols=42 Identities=31% Similarity=0.581 Sum_probs=33.3
Q ss_pred CceE-EEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeecc
Q 000265 114 SCGV-GFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVA 163 (1760)
Q Consensus 114 aCGV-Gfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~~ 163 (1760)
+||| ||.-...-++-|.|++..++-|.+|++|| . |++||.++
T Consensus 1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRG-Y-------DSaGiaId 43 (670)
T KOG1268|consen 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRG-Y-------DSAGIAID 43 (670)
T ss_pred CcceeeeeccccCCcHHHHHHHHHHHHHHhhccC-C-------CCCceeec
Confidence 5999 55556667777899999999999999996 3 66777663
No 434
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=54.60 E-value=53 Score=38.91 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHH-HHHHHHcCCCEEEE--ecCCCCCCCC
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVI-ASGVVKGHADHVLI--SGHDGGTGAS 1193 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvI--sG~~GGTGas 1193 (1760)
-.|+++.+++..+|+..+..||.+-.=...|.+.. +..+.++|||.|.. .|-++++|..
T Consensus 167 ~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~~aGN~ 228 (263)
T cd07943 167 MLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGAGAGNT 228 (263)
T ss_pred cCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccCCcCCc
Confidence 35788999999999987555887776444566653 45688999999865 4666666544
No 435
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=54.15 E-value=41 Score=44.51 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHH-HHHHHHcCCCEEEE--ecCCCCCCCCc
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVI-ASGVVKGHADHVLI--SGHDGGTGASR 1194 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvI--sG~~GGTGas~ 1194 (1760)
.++++..++|..||+..+ .||.+..=...|.+.. ...|+++|||.|.. +|.+|+||..+
T Consensus 175 ~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~~tGn~~ 236 (582)
T TIGR01108 175 LTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGADGIDTAISSMSGGTSHPP 236 (582)
T ss_pred cCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEeccccccccccChh
Confidence 457889999999999874 8888886555677664 35588999999864 57777776654
No 436
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=53.87 E-value=89 Score=37.25 Aligned_cols=85 Identities=15% Similarity=0.042 Sum_probs=54.9
Q ss_pred HHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCC
Q 000265 1144 IYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRG 1223 (1760)
Q Consensus 1144 I~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~ 1223 (1760)
|..+|+.. +.||..|--...- . -+..+..+|||+|.+.+.. ++ ..-|.+..+.....|
T Consensus 103 l~~v~~~v-~iPvl~kdfi~~~-~-qi~~a~~~GAD~VlLi~~~---------------l~-~~~l~~li~~a~~lG--- 160 (260)
T PRK00278 103 LRAARAAV-SLPVLRKDFIIDP-Y-QIYEARAAGADAILLIVAA---------------LD-DEQLKELLDYAHSLG--- 160 (260)
T ss_pred HHHHHHhc-CCCEEeeeecCCH-H-HHHHHHHcCCCEEEEEecc---------------CC-HHHHHHHHHHHHHcC---
Confidence 45566654 7899988532211 1 2455889999999997652 01 124455555555444
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000265 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
+.++++ +.|-.++.+|..+||+-+|+.
T Consensus 161 -l~~lve--vh~~~E~~~A~~~gadiIgin 187 (260)
T PRK00278 161 -LDVLVE--VHDEEELERALKLGAPLIGIN 187 (260)
T ss_pred -CeEEEE--eCCHHHHHHHHHcCCCEEEEC
Confidence 344443 568899999999999988764
No 437
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=52.97 E-value=50 Score=39.37 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHhCCC-CceEEEEccccCHHHH-HHHHHHcCCCEEEE--ecCCCCCCC
Q 000265 1135 YSIEDLAQLIYDLKNANPG-ARISVKLVSEAGVGVI-ASGVVKGHADHVLI--SGHDGGTGA 1192 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~-~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvI--sG~~GGTGa 1192 (1760)
.+|+++.+++..||+..++ .||.+-.=...|.+.. +..+.++||+.|.. .|.++++|.
T Consensus 164 ~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN 225 (266)
T cd07944 164 MYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGRGAGN 225 (266)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCCCcCc
Confidence 4578999999999988753 8888876444566653 45688999999854 466555544
No 438
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=52.85 E-value=26 Score=37.28 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=30.2
Q ss_pred eEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCC
Q 000265 1225 TILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCP 1274 (1760)
Q Consensus 1225 V~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP 1274 (1760)
|+|..+|-+ ++.=|++|+.-|||+|.++. ||.+.|+
T Consensus 33 Irv~CsGrv-n~~fvl~Al~~GaDGV~v~G-------------C~~geCH 68 (132)
T COG1908 33 IRVMCSGRV-NPEFVLKALRKGADGVLVAG-------------CKIGECH 68 (132)
T ss_pred EEeeccCcc-CHHHHHHHHHcCCCeEEEec-------------cccccee
Confidence 778888887 67889999999999997763 7788887
No 439
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=52.84 E-value=84 Score=38.78 Aligned_cols=89 Identities=16% Similarity=0.026 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccc---cCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHH
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSE---AGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAE 1211 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~---~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Lae 1211 (1760)
.+++.+.+.|.++|+...++|+.|-+... .-.......+.+.++++|++++ |.|+.
T Consensus 37 ~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~----------------G~P~~----- 95 (320)
T cd04743 37 MRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAG----------------GRPDQ----- 95 (320)
T ss_pred CCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcC----------------CChHH-----
Confidence 35789999999999964589999988532 1133444557789999998753 23542
Q ss_pred HHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccc
Q 000265 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFG 1251 (1760)
Q Consensus 1212 v~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg 1251 (1760)
.+.|++.| +.++ .-+.|.....++..+|||+|-
T Consensus 96 -~~~lk~~G----i~v~--~~v~s~~~A~~a~~~GaD~vV 128 (320)
T cd04743 96 -ARALEAIG----ISTY--LHVPSPGLLKQFLENGARKFI 128 (320)
T ss_pred -HHHHHHCC----CEEE--EEeCCHHHHHHHHHcCCCEEE
Confidence 24455554 3444 334688899999999999873
No 440
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=52.83 E-value=11 Score=48.96 Aligned_cols=40 Identities=33% Similarity=0.378 Sum_probs=29.9
Q ss_pred CCCCceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 111 DKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 111 E~DaCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
-|+.|||..+...+. .+....+.+|..|+|||= |+|||.+
T Consensus 20 ~~emCGI~Gi~~~~~----~~~~~~~~gL~~LqHRGq--------dsaGIa~ 59 (510)
T PRK07847 20 PQDECGVFGVWAPGE----EVAKLTYYGLYALQHRGQ--------EAAGIAV 59 (510)
T ss_pred ccccCeEEEEECCCc----CHHHHHHHHHHHHhhhCc--------CcccEEE
Confidence 488999977775321 345556689999999993 7899987
No 441
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=52.33 E-value=68 Score=38.82 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHH-HHHHHHcCCCEEEE--ecCCC
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVI-ASGVVKGHADHVLI--SGHDG 1188 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvI--sG~~G 1188 (1760)
-+|.++.++|..||+..|+.||.+-.=...|.+.. +..|.++|||.|.. .|-++
T Consensus 181 ~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGe 237 (287)
T PRK05692 181 GTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGG 237 (287)
T ss_pred cCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCC
Confidence 45788999999999988778998887545577654 45688999999865 35543
No 442
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=51.77 E-value=60 Score=37.01 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=54.7
Q ss_pred cccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHH
Q 000265 1162 SEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAI 1241 (1760)
Q Consensus 1162 ~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaK 1241 (1760)
+.+....+...+.+.++|+|.+|..-. ++...+.++.+.|++.+++++++|++-|..-+. +.++
T Consensus 120 ~~vp~e~~v~~~~~~~pd~v~lS~~~~---------------~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~~-~~~~ 183 (197)
T TIGR02370 120 RDVPIDTVVEKVKKEKPLMLTGSALMT---------------TTMYGQKDINDKLKEEGYRDSVKFMVGGAPVTQ-DWAD 183 (197)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEccccc---------------cCHHHHHHHHHHHHHcCCCCCCEEEEEChhcCH-HHHH
Confidence 345566788889999999999987522 123456888888998888888999999988875 4544
Q ss_pred HHHcCCCccc
Q 000265 1242 AALLGAEEFG 1251 (1760)
Q Consensus 1242 AlaLGAdaVg 1251 (1760)
.+|||+++
T Consensus 184 --~~gad~~~ 191 (197)
T TIGR02370 184 --KIGADVYG 191 (197)
T ss_pred --HhCCcEEe
Confidence 56999875
No 443
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=51.61 E-value=96 Score=33.60 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=53.4
Q ss_pred cCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCH-----HH
Q 000265 1164 AGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTG-----RD 1238 (1760)
Q Consensus 1164 ~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG-----~D 1238 (1760)
+....+...+.+.++|+|.+|...+.+ ...+.++.+.|++.+.+ +++|++-|.+-++ .+
T Consensus 41 vp~e~i~~~a~~~~~d~V~lS~~~~~~---------------~~~~~~~~~~L~~~~~~-~~~i~vGG~~~~~~~~~~~~ 104 (137)
T PRK02261 41 TSQEEFIDAAIETDADAILVSSLYGHG---------------EIDCRGLREKCIEAGLG-DILLYVGGNLVVGKHDFEEV 104 (137)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCccccC---------------HHHHHHHHHHHHhcCCC-CCeEEEECCCCCCccChHHH
Confidence 445678888999999999998764421 23456677778877776 4888998888544 46
Q ss_pred HHHHHHcCCCcccc
Q 000265 1239 VAIAALLGAEEFGF 1252 (1760)
Q Consensus 1239 VaKAlaLGAdaVg~ 1252 (1760)
.-++..+|.++|.-
T Consensus 105 ~~~l~~~G~~~vf~ 118 (137)
T PRK02261 105 EKKFKEMGFDRVFP 118 (137)
T ss_pred HHHHHHcCCCEEEC
Confidence 67888999887644
No 444
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=51.51 E-value=93 Score=39.50 Aligned_cols=109 Identities=12% Similarity=0.074 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcc---ccCHHHHHHHHHHcCCCEEEEecC--CCCCCCCccccccccCCCHHHHH
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVS---EAGVGVIASGVVKGHADHVLISGH--DGGTGASRWTGIKNAGLPWELGL 1209 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~---~~Gvg~iA~~aakaGAD~IvIsG~--~GGTGas~~~si~~~GlP~~~~L 1209 (1760)
..++.|...++.|.+.+ ++||..|.-. ..|.-.......+.|+.+|.|-+. ++++ --.++..-+
T Consensus 132 t~~dkl~~IL~sLvk~~-~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~----------~~~~~~~~i 200 (477)
T KOG2334|consen 132 TDPDKLVAILYSLVKGN-KVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERN----------QEPATKDYI 200 (477)
T ss_pred cCHHHHHHHHHHHHhcC-cccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCC----------CCCCCHHHH
Confidence 34677888899998887 9999999742 234444556788999999988664 3322 123455678
Q ss_pred HHHHHHHHhCCCCCceEEEEcCCcCC---HHHHHHH-HHcCCCccccchhHHHHh
Q 000265 1210 AETHQTLVANDLRGRTILQTDGQLKT---GRDVAIA-ALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1210 aev~q~L~~~glr~rV~LiadGGIrt---G~DVaKA-laLGAdaVg~GTa~L~Al 1260 (1760)
.++.+++. .|+||+-||.++ +.|+-+. ..-|++.|.++++++..-
T Consensus 201 ~~i~~~~~------~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~ 249 (477)
T KOG2334|consen 201 REIAQACQ------MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNP 249 (477)
T ss_pred HHHHHHhc------cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCC
Confidence 88888753 399999999999 8888766 456999999999776643
No 445
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=51.37 E-value=38 Score=39.33 Aligned_cols=81 Identities=19% Similarity=0.128 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHh
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVA 1218 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~ 1218 (1760)
+..+.|..+++..|++-|..-.|-+ ..-+..+.++||++|+==|. + +++.+.+..
T Consensus 50 ~a~e~I~~l~~~~p~~lIGAGTVL~---~~q~~~a~~aGa~fiVsP~~------------~----------~ev~~~a~~ 104 (211)
T COG0800 50 AALEAIRALAKEFPEALIGAGTVLN---PEQARQAIAAGAQFIVSPGL------------N----------PEVAKAANR 104 (211)
T ss_pred CHHHHHHHHHHhCcccEEccccccC---HHHHHHHHHcCCCEEECCCC------------C----------HHHHHHHHh
Confidence 3567899999998866664443322 13356699999999964332 1 445555544
Q ss_pred CCCCCceEEEEcCCcCCHHHHHHHHHcCCCcc
Q 000265 1219 NDLRGRTILQTDGQLKTGRDVAIAALLGAEEF 1250 (1760)
Q Consensus 1219 ~glr~rV~LiadGGIrtG~DVaKAlaLGAdaV 1250 (1760)
.+ +| ..=|+.|+.++..|+.+|++.+
T Consensus 105 ~~----ip--~~PG~~TptEi~~Ale~G~~~l 130 (211)
T COG0800 105 YG----IP--YIPGVATPTEIMAALELGASAL 130 (211)
T ss_pred CC----Cc--ccCCCCCHHHHHHHHHcChhhe
Confidence 33 33 4569999999999999999954
No 446
>PTZ00300 pyruvate kinase; Provisional
Probab=51.20 E-value=1.4e+02 Score=38.53 Aligned_cols=106 Identities=20% Similarity=0.124 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHH-HHHHHH
Q 000265 1134 IYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE-LGLAET 1212 (1760)
Q Consensus 1134 iySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~-~~Laev 1212 (1760)
+.|.+|+.++...+...+.+.+|+.|.-...++..+-.-+ .++|+|.|.=.+=|. ..|.|-. ....++
T Consensus 169 VrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~--~~~DgImVaRGDLgv---------ei~~e~vp~~Qk~I 237 (454)
T PTZ00300 169 IRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSII--EESDGIMVARGDLGV---------EIPAEKVVVAQKIL 237 (454)
T ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHH--HhCCEEEEecchhhh---------hcChHHHHHHHHHH
Confidence 4577888887777766655678999985544555443333 689999994221111 2222211 233444
Q ss_pred HHHHHhCCCCCceEEEEcCCcC------------CHHHHHHHHHcCCCccccch
Q 000265 1213 HQTLVANDLRGRTILQTDGQLK------------TGRDVAIAALLGAEEFGFST 1254 (1760)
Q Consensus 1213 ~q~L~~~glr~rV~LiadGGIr------------tG~DVaKAlaLGAdaVg~GT 1254 (1760)
.+.+... ..|+|++.++- --.||+-|+.-|||+|++..
T Consensus 238 i~~~~~~----gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ 287 (454)
T PTZ00300 238 ISKCNVA----GKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSG 287 (454)
T ss_pred HHHHHHc----CCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEec
Confidence 4555544 36888888873 34799999999999998854
No 447
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=50.87 E-value=82 Score=37.53 Aligned_cols=72 Identities=15% Similarity=0.137 Sum_probs=42.8
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCccccccccCCCHH---HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHH----HHH
Q 000265 1171 SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE---LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVA----IAA 1243 (1760)
Q Consensus 1171 ~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~---~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVa----KAl 1243 (1760)
..+.++|+|+|.+-|+.|-.. .+... ..+..+.+. +.++++|++.=|=.+-.+++ .|.
T Consensus 28 ~~l~~~Gv~gl~v~GstGE~~----------~lt~~Er~~l~~~~~~~-----~~~~~~vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 28 EFQIENGTDGLVVCGTTGESP----------TLSDEEHEAVIEAVVEA-----VNGRVPVIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred HHHHHcCCCEEEECCCCcchh----------hCCHHHHHHHHHHHHHH-----hCCCCcEEeccCCccHHHHHHHHHHHH
Confidence 345578999999988765431 12222 222233333 34578887644434455554 467
Q ss_pred HcCCCccccchhHH
Q 000265 1244 LLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L 1257 (1760)
.+|||+|.+..+..
T Consensus 93 ~~G~d~v~~~~P~~ 106 (284)
T cd00950 93 KAGADAALVVTPYY 106 (284)
T ss_pred HcCCCEEEEccccc
Confidence 88999998887643
No 448
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=50.66 E-value=1.4e+02 Score=34.37 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEcccc---CHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHH
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSEA---GVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAET 1212 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~~---Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev 1212 (1760)
+.+.+.+++..++... +.|+.+.++... +....+..+.++|+|+|.+.+. . + .+.
T Consensus 37 ~~~~~~~~~~~i~~~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~-----~-----------~-----~~~ 94 (236)
T cd04730 37 TPEALRAEIRKIRALT-DKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG-----P-----------P-----AEV 94 (236)
T ss_pred CHHHHHHHHHHHHHhc-CCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC-----C-----------C-----HHH
Confidence 5677778888888654 457777776543 6777788899999999998332 0 1 112
Q ss_pred HHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000265 1213 HQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1213 ~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
.+.+... .++++. .+.+..++.++...|||.+.+.
T Consensus 95 ~~~~~~~----~i~~i~--~v~~~~~~~~~~~~gad~i~~~ 129 (236)
T cd04730 95 VERLKAA----GIKVIP--TVTSVEEARKAEAAGADALVAQ 129 (236)
T ss_pred HHHHHHc----CCEEEE--eCCCHHHHHHHHHcCCCEEEEe
Confidence 2233332 245554 3567788888888999988763
No 449
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=50.55 E-value=35 Score=44.34 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHhCC-CCceEEEEccccCHHHH-HHHHHHcCCCEEEE--ecCCCCCC
Q 000265 1135 YSIEDLAQLIYDLKNANP-GARISVKLVSEAGVGVI-ASGVVKGHADHVLI--SGHDGGTG 1191 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p-~~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvI--sG~~GGTG 1191 (1760)
-++++..++|..||+..| +.||.+..=...|.+.. ...|+++|||.|.. +|-++|+|
T Consensus 181 l~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg~~aG 241 (499)
T PRK12330 181 LKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSLGPG 241 (499)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeeccccccccc
Confidence 457889999999999885 89999987555677764 34588999999865 56655554
No 450
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=49.96 E-value=44 Score=40.22 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHH-HHHHHHcCCCEEE--EecCCCCCCCC
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVI-ASGVVKGHADHVL--ISGHDGGTGAS 1193 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i-A~~aakaGAD~Iv--IsG~~GGTGas 1193 (1760)
.+|+++.+++..+|+..|+.||.+-.=...|.+.. +..+.++|||.|. +.|-++++|..
T Consensus 173 ~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe~aGN~ 234 (280)
T cd07945 173 LSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAGNA 234 (280)
T ss_pred CCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccCc
Confidence 45788999999999988889998887545577654 4568899999986 45665665543
No 451
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=49.94 E-value=16 Score=41.03 Aligned_cols=39 Identities=38% Similarity=0.561 Sum_probs=29.9
Q ss_pred ceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 115 CGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
|||.++...++......... ..++..|.|||. ||+|+..
T Consensus 1 Cgi~g~~~~~~~~~~~~~~~-~~~~~~~~~rg~--------dg~Gi~~ 39 (220)
T cd00352 1 CGIFGIVGADGAASLLLLLL-LRGLAALEHRGP--------DGAGIAV 39 (220)
T ss_pred CEEEEEECCCCcchhhHHHH-HHHHHhhcccCC--------ccCCeEE
Confidence 99999998877655433322 578999999994 8999987
No 452
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=49.78 E-value=13 Score=43.61 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=26.8
Q ss_pred ceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 115 CGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
|||..+...+ +..+..+.+|..|+|||- ||+||..
T Consensus 1 Cgi~g~~~~~-----~~~~~~~~~l~~l~~RG~--------D~~Gi~~ 35 (252)
T cd00715 1 CGVFGIYGAE-----DAARLTYLGLYALQHRGQ--------ESAGIAT 35 (252)
T ss_pred CEEEEEECCc-----chHHHHHHHHHHHhccCc--------ceeEEEE
Confidence 9996666432 245667799999999994 8999986
No 453
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=49.58 E-value=1.3e+02 Score=35.98 Aligned_cols=118 Identities=9% Similarity=0.006 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEccc-cCHHHH--------------------HHHHHHcCCCEEEE-----ecCCCC
Q 000265 1136 SIEDLAQLIYDLKNANPGARISVKLVSE-AGVGVI--------------------ASGVVKGHADHVLI-----SGHDGG 1189 (1760)
Q Consensus 1136 SiedLaqlI~~Lk~~~p~~pV~VKlv~~-~Gvg~i--------------------A~~aakaGAD~IvI-----sG~~GG 1189 (1760)
+.+.+.+--..|....+.-.|.||++.+ .|+.-+ |..++++||++|.. +.+ |.
T Consensus 98 d~~~mi~~A~~l~~~~~~~nv~IKIPaT~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~-~~ 176 (252)
T cd00439 98 DTQGMVEAAKYLSKVVNRRNIYIKIPATAEGIPAIKDLIAAGISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTL-MD 176 (252)
T ss_pred CHHHHHHHHHHHHHhcCcccEEEEeCCCHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHH-hh
Confidence 3444444445555554333588888753 233322 22377889988864 111 10
Q ss_pred CCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHh
Q 000265 1190 TGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1190 TGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
..... ...+..+-+.+..+.++++.+..++.. ..| ....+|+..+|..++ |++.|-+....+..+
T Consensus 177 ~~~~~-~~~d~~~~~gi~~~~~~~~~~~~~~~~--tki-L~AS~r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 177 KMLEQ-IGLDLRGKAGVAQVTLAYKLYKQKFKK--QRV-LWASFSDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred hhccc-cccccccCcHHHHHHHHHHHHHHhCCC--CeE-EEEeeCCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 00000 001112226667777888888776654 334 445688999997655 999987777666543
No 454
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=49.49 E-value=84 Score=36.07 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=42.6
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCC
Q 000265 1169 IASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1169 iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAd 1248 (1760)
-+..+.++|||+|+++...... |...-+.+..+.+++.+ ++++++ ++.|..++..+..+|++
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~~-------------p~~~~~~~~i~~~~~~g---~~~iiv--~v~t~~ea~~a~~~G~d 145 (219)
T cd04729 84 EVDALAAAGADIIALDATDRPR-------------PDGETLAELIKRIHEEY---NCLLMA--DISTLEEALNAAKLGFD 145 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCCC-------------CCCcCHHHHHHHHHHHh---CCeEEE--ECCCHHHHHHHHHcCCC
Confidence 3466889999999887643221 11011233343344433 356665 67899999999999999
Q ss_pred cccc
Q 000265 1249 EFGF 1252 (1760)
Q Consensus 1249 aVg~ 1252 (1760)
.+.+
T Consensus 146 ~i~~ 149 (219)
T cd04729 146 IIGT 149 (219)
T ss_pred EEEc
Confidence 8854
No 455
>PRK05269 transaldolase B; Provisional
Probab=49.08 E-value=1.7e+02 Score=36.21 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHh
Q 000265 1202 GLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1202 GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
+.|.+..+.++++..+.+|.. ..|++ ..+|+..+|.. +.|+|.+-+.-..|-.+
T Consensus 199 ~~~Gv~~v~~i~~~~k~~~~~--t~im~-ASfrn~~~v~~--laG~d~vTi~p~ll~~l 252 (318)
T PRK05269 199 EDPGVVSVTKIYNYYKKHGYK--TVVMG-ASFRNTGQILE--LAGCDRLTISPALLEEL 252 (318)
T ss_pred CCcHHHHHHHHHHHHHHcCCC--ceEEe-eccCCHHHHHH--HhCCCeEECCHHHHHHH
Confidence 567788899999999887764 34444 58999999997 66999998887777765
No 456
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=48.79 E-value=54 Score=39.17 Aligned_cols=88 Identities=17% Similarity=0.159 Sum_probs=53.1
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCccccccccCCCHH---HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHH----HHH
Q 000265 1171 SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE---LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVA----IAA 1243 (1760)
Q Consensus 1171 ~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~---~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVa----KAl 1243 (1760)
..+.++|+|+|.+.|..|-. +-++.. ..+..+.+.. ..+++|++.=|=-+-.+++ .|-
T Consensus 29 ~~l~~~Gv~gl~~~GstGE~----------~~Lt~~Er~~l~~~~~~~~-----~~~~~vi~gv~~~st~~~i~~a~~a~ 93 (289)
T PF00701_consen 29 DFLIEAGVDGLVVLGSTGEF----------YSLTDEERKELLEIVVEAA-----AGRVPVIAGVGANSTEEAIELARHAQ 93 (289)
T ss_dssp HHHHHTTSSEEEESSTTTTG----------GGS-HHHHHHHHHHHHHHH-----TTSSEEEEEEESSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEECCCCccc----------ccCCHHHHHHHHHHHHHHc-----cCceEEEecCcchhHHHHHHHHHHHh
Confidence 44667899999998885532 122322 2333344442 3578888744433444444 457
Q ss_pred HcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHH
Q 000265 1244 LLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLA 1303 (1760)
Q Consensus 1244 aLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~ 1303 (1760)
.+|||++.+..++.. ...++++..||..++
T Consensus 94 ~~Gad~v~v~~P~~~------------------------------~~s~~~l~~y~~~ia 123 (289)
T PF00701_consen 94 DAGADAVLVIPPYYF------------------------------KPSQEELIDYFRAIA 123 (289)
T ss_dssp HTT-SEEEEEESTSS------------------------------SCCHHHHHHHHHHHH
T ss_pred hcCceEEEEeccccc------------------------------cchhhHHHHHHHHHH
Confidence 899999988765332 224778888888776
No 457
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=48.50 E-value=15 Score=46.88 Aligned_cols=36 Identities=33% Similarity=0.405 Sum_probs=27.8
Q ss_pred CceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 114 SCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 114 aCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
+|||..+...+ .+....+.+|..|+|||= |+|||.+
T Consensus 1 MCGI~G~~~~~-----~~~~~~~~~L~~LqhRG~--------DsaGia~ 36 (445)
T PRK08525 1 MCAVVGVINSK-----NAAKLAYYALFAMQHRGQ--------EASGISV 36 (445)
T ss_pred CceEEEEEcCc-----cHHHHHHHHHHHhhCcCc--------ccceEEE
Confidence 59996666432 356667789999999994 8999987
No 458
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=48.34 E-value=1.1e+02 Score=35.19 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=54.2
Q ss_pred HHHHHHHhCCCCceEEEEcc--------ccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHH
Q 000265 1143 LIYDLKNANPGARISVKLVS--------EAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQ 1214 (1760)
Q Consensus 1143 lI~~Lk~~~p~~pV~VKlv~--------~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q 1214 (1760)
.|..+|+.. +.||+..+-. ..+...-+..+.++|||+|++++...-. | .+.. +.++.+
T Consensus 47 ~i~~i~~~~-~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~---p------~~~~----~~~~i~ 112 (221)
T PRK01130 47 DIKAIRAVV-DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPR---P------DGET----LAELVK 112 (221)
T ss_pred HHHHHHHhC-CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCC---C------CCCC----HHHHHH
Confidence 356666654 7888633210 0122334567899999999987642210 0 0111 123333
Q ss_pred HHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccc
Q 000265 1215 TLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFS 1253 (1760)
Q Consensus 1215 ~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~G 1253 (1760)
.+++. ..+++++ ++.|..++.++..+|+|.++++
T Consensus 113 ~~~~~---~~i~vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 113 RIKEY---PGQLLMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred HHHhC---CCCeEEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 33331 2466665 5679999999999999998664
No 459
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=48.29 E-value=80 Score=38.41 Aligned_cols=81 Identities=14% Similarity=-0.025 Sum_probs=52.1
Q ss_pred HHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCC
Q 000265 1144 IYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRG 1223 (1760)
Q Consensus 1144 I~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~ 1223 (1760)
|..+|+.. +.||+.|.- .|--.-|..+.++|+|+| +..+= =.| +.+.+...+.. .
T Consensus 66 I~aIk~~V-~iPVigk~R--igh~~Ea~~L~~~GvDiI--D~Te~-------------lrp----ad~~~~~~K~~-f-- 120 (293)
T PRK04180 66 IEEIMDAV-SIPVMAKAR--IGHFVEAQILEALGVDYI--DESEV-------------LTP----ADEEYHIDKWD-F-- 120 (293)
T ss_pred HHHHHHhC-CCCeEEeeh--hhHHHHHHHHHHcCCCEE--eccCC-------------CCc----hHHHHHHHHHH-c--
Confidence 55677775 899999862 233344677999999999 32211 113 22333333321 1
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccc
Q 000265 1224 RTILQTDGQLKTGRDVAIAALLGAEEFG 1251 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg 1251 (1760)
+++++ .|++|-.+...++.+|||.|+
T Consensus 121 ~~~fm--ad~~~l~EAlrai~~GadmI~ 146 (293)
T PRK04180 121 TVPFV--CGARNLGEALRRIAEGAAMIR 146 (293)
T ss_pred CCCEE--ccCCCHHHHHHHHHCCCCeee
Confidence 34544 578999999999999999873
No 460
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=48.29 E-value=82 Score=38.94 Aligned_cols=81 Identities=17% Similarity=0.145 Sum_probs=54.9
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCC
Q 000265 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGA 1247 (1760)
.++..+.++|+|.|-|. |+.|-|+++... -....|...-+.++.+.+. +.++.++..-|+.+-.|+-.|...|+
T Consensus 28 ~ia~~Ld~aGV~~IEvg-~g~gl~g~s~~~-G~~~~~~~e~i~~~~~~~~----~~~~~~ll~pg~~~~~dl~~a~~~gv 101 (333)
T TIGR03217 28 AIAAALDEAGVDAIEVT-HGDGLGGSSFNY-GFSAHTDLEYIEAAADVVK----RAKVAVLLLPGIGTVHDLKAAYDAGA 101 (333)
T ss_pred HHHHHHHHcCCCEEEEe-cCCCCCCccccC-CCCCCChHHHHHHHHHhCC----CCEEEEEeccCccCHHHHHHHHHCCC
Confidence 46677889999999994 433333333211 0122344455666665532 34677788889999999999999999
Q ss_pred Cccccch
Q 000265 1248 EEFGFST 1254 (1760)
Q Consensus 1248 daVg~GT 1254 (1760)
+.|-+.+
T Consensus 102 d~iri~~ 108 (333)
T TIGR03217 102 RTVRVAT 108 (333)
T ss_pred CEEEEEe
Confidence 9998776
No 461
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=47.77 E-value=17 Score=42.63 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=29.2
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccccchh
Q 000265 1224 RTILQTDGQLKTGRDVAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa 1255 (1760)
..+||.-||||++....+.+..|||.+-.|+.
T Consensus 191 ~~~LivGGGIrs~E~A~~~a~agAD~IVtG~i 222 (240)
T COG1646 191 DTPLIVGGGIRSPEQAREMAEAGADTIVTGTI 222 (240)
T ss_pred cceEEEcCCcCCHHHHHHHHHcCCCEEEECce
Confidence 45999999999999999988889999999985
No 462
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=47.70 E-value=65 Score=38.59 Aligned_cols=57 Identities=21% Similarity=0.178 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHH-HHHHHHcCCCEEEE--ecCCCCCCC
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVI-ASGVVKGHADHVLI--SGHDGGTGA 1192 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvI--sG~~GGTGa 1192 (1760)
.+|+++.++|..+|+..+ .||.+-.=...|.+.. +..+.++||+.|.. .|-++++|.
T Consensus 175 ~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN 234 (275)
T cd07937 175 LTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQ 234 (275)
T ss_pred CCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccCCcCC
Confidence 457889999999999875 8888876444566653 35578999999974 566666554
No 463
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=47.58 E-value=1.9e+02 Score=35.34 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=51.3
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCC--cCCHHHHHHHHHcCC
Q 000265 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQ--LKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGG--IrtG~DVaKAlaLGA 1247 (1760)
|..+.+.|+|.|-++- |-.|+...+..+..+ ...|.++++.+ .++||++=|| | +-.++.+++..|+
T Consensus 159 a~~f~~tgvD~LAv~i--G~vHG~y~t~~k~l~---~e~L~~i~~~~------~~iPlVlhGGSGi-~~e~~~~~i~~Gi 226 (293)
T PRK07315 159 AKAMVETGIDFLAAGI--GNIHGPYPENWEGLD---LDHLEKLTEAV------PGFPIVLHGGSGI-PDDQIQEAIKLGV 226 (293)
T ss_pred HHHHHHcCCCEEeecc--ccccccCCCCCCcCC---HHHHHHHHHhc------cCCCEEEECCCCC-CHHHHHHHHHcCC
Confidence 3445589999998861 111111111012222 34677777663 1489999999 7 4577999999999
Q ss_pred CccccchhHHHH
Q 000265 1248 EEFGFSTAPLIT 1259 (1760)
Q Consensus 1248 daVg~GTa~L~A 1259 (1760)
..|.++|.+..+
T Consensus 227 ~KiNv~T~i~~~ 238 (293)
T PRK07315 227 AKVNVNTECQIA 238 (293)
T ss_pred CEEEEccHHHHH
Confidence 999999998864
No 464
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=47.49 E-value=49 Score=42.26 Aligned_cols=86 Identities=12% Similarity=-0.003 Sum_probs=52.7
Q ss_pred cCHHHHHHHHHHcCCCEEEEecCCCCCCCCcccccccc-CCC-HHHHHHHHHHHHHh--CCCCCceEEEEcCCcCCHHHH
Q 000265 1164 AGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNA-GLP-WELGLAETHQTLVA--NDLRGRTILQTDGQLKTGRDV 1239 (1760)
Q Consensus 1164 ~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~-GlP-~~~~Laev~q~L~~--~glr~rV~LiadGGIrtG~DV 1239 (1760)
.+...+ ..+.+.|+|+|.++-- =-| .-|.. ..| ....|.++.+.+.. ..-...+||+|-||| +..++
T Consensus 308 Hs~eEl-~~A~~~gaDYI~lGPI-FpT------~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni 378 (437)
T PRK12290 308 HGYYEL-LRIVQIQPSYIALGHI-FPT------TTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNA 378 (437)
T ss_pred CCHHHH-HHHhhcCCCEEEECCc-cCC------CCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHH
Confidence 455553 4577899999988321 111 11211 111 12344444443211 000125899999999 89999
Q ss_pred HHHHHcCCCccccchhHHH
Q 000265 1240 AIAALLGAEEFGFSTAPLI 1258 (1760)
Q Consensus 1240 aKAlaLGAdaVg~GTa~L~ 1258 (1760)
...+..||++|.+=++++-
T Consensus 379 ~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 379 EQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred HHHHHcCCCEEEEehHhhc
Confidence 9999999999999888663
No 465
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=47.19 E-value=22 Score=42.41 Aligned_cols=82 Identities=23% Similarity=0.238 Sum_probs=45.8
Q ss_pred HHHHHHHh-CCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecC--CCCCCCCccccccccCCCHHHHHHHHHHHHHhC
Q 000265 1143 LIYDLKNA-NPGARISVKLVSEAGVGVIASGVVKGHADHVLISGH--DGGTGASRWTGIKNAGLPWELGLAETHQTLVAN 1219 (1760)
Q Consensus 1143 lI~~Lk~~-~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~--~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~ 1219 (1760)
++..||+. .-+.||+--. +|.|..|+.+.+.|||.|++=+. ----|.++..++...|-.-...+..+.+.|..
T Consensus 3 il~~l~~~i~~~~pIig~g---aGtGlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~- 78 (268)
T PF09370_consen 3 ILDRLRAQIKAGKPIIGAG---AGTGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPV- 78 (268)
T ss_dssp HHHHHHHHHHTT--EEEEE---ESSHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-
T ss_pred HHHHHHHHHhCCCceEEEe---eccchhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhh-
Confidence 34445433 1245664332 58999999999999999998332 11123334444555555556666667777765
Q ss_pred CCCCceEEEEc
Q 000265 1220 DLRGRTILQTD 1230 (1760)
Q Consensus 1220 glr~rV~Liad 1230 (1760)
+ .++||++-
T Consensus 79 -v-~~tPViaG 87 (268)
T PF09370_consen 79 -V-KDTPVIAG 87 (268)
T ss_dssp ---SSS-EEEE
T ss_pred -c-cCCCEEEE
Confidence 2 35888874
No 466
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=47.17 E-value=39 Score=43.73 Aligned_cols=73 Identities=21% Similarity=0.110 Sum_probs=47.8
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCccccccccCCC-HHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCC
Q 000265 1170 ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLP-WELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAE 1248 (1760)
Q Consensus 1170 A~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP-~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAd 1248 (1760)
+..+.+.|||+|.++=. --|. .|....| ....+.+..+. -++||++-||| +..++...+..||+
T Consensus 403 ~~~a~~~gadyi~~gpi-f~t~------tk~~~~~~g~~~~~~~~~~-------~~~Pv~aiGGI-~~~~~~~~~~~G~~ 467 (502)
T PLN02898 403 AEQAWKDGADYIGCGGV-FPTN------TKANNKTIGLDGLREVCEA-------SKLPVVAIGGI-SASNAASVMESGAP 467 (502)
T ss_pred HHHHhhcCCCEEEECCe-ecCC------CCCCCCCCCHHHHHHHHHc-------CCCCEEEECCC-CHHHHHHHHHcCCC
Confidence 45677899999987321 1111 1111111 12334443321 25899999999 58999999999999
Q ss_pred ---ccccchhHH
Q 000265 1249 ---EFGFSTAPL 1257 (1760)
Q Consensus 1249 ---aVg~GTa~L 1257 (1760)
+|.++++.+
T Consensus 468 ~~~gvav~~~i~ 479 (502)
T PLN02898 468 NLKGVAVVSALF 479 (502)
T ss_pred cCceEEEEeHHh
Confidence 999999865
No 467
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.91 E-value=46 Score=38.93 Aligned_cols=68 Identities=10% Similarity=0.006 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCC-HHHHHHHHHcC
Q 000265 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKT-GRDVAIAALLG 1246 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrt-G~DVaKAlaLG 1246 (1760)
+-...+.++|+|.|.+== ++. .|++.+.+|. +.-..++++..|||.. ..++...+..|
T Consensus 123 sEi~~A~~~Ga~~vKlFP--A~~----------~G~~~ikal~---------~p~p~i~~~ptGGV~~~~~n~~~yl~aG 181 (222)
T PRK07114 123 SEIGYAEELGCEIVKLFP--GSV----------YGPGFVKAIK---------GPMPWTKIMPTGGVEPTEENLKKWFGAG 181 (222)
T ss_pred HHHHHHHHCCCCEEEECc--ccc----------cCHHHHHHHh---------ccCCCCeEEeCCCCCcchhcHHHHHhCC
Confidence 344668999999998831 111 1222222221 1234699999999985 58899999999
Q ss_pred CCccccchhH
Q 000265 1247 AEEFGFSTAP 1256 (1760)
Q Consensus 1247 AdaVg~GTa~ 1256 (1760)
|.+||+|+..
T Consensus 182 a~avg~Gs~L 191 (222)
T PRK07114 182 VTCVGMGSKL 191 (222)
T ss_pred CEEEEEChhh
Confidence 9999999964
No 468
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=46.51 E-value=82 Score=39.02 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHhC-CCCceEEEEccccCHHHH-HHHHHHcCCCEEEE--ecCCCCCCC
Q 000265 1135 YSIEDLAQLIYDLKNAN-PGARISVKLVSEAGVGVI-ASGVVKGHADHVLI--SGHDGGTGA 1192 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~-p~~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvI--sG~~GGTGa 1192 (1760)
..++++.++|..+|+.. |+.||.+-.=.+.|.+.. +..|.++||+.|.. .|-++|+|.
T Consensus 170 ~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~~aGN 231 (337)
T PRK08195 170 LLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGAGAGN 231 (337)
T ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcccccC
Confidence 45789999999999887 688998887444566653 45688999998754 355555544
No 469
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=46.14 E-value=2e+02 Score=33.90 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEE-ecCCCCCCCCccccccccCCCH-HHHHHHHHH
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLI-SGHDGGTGASRWTGIKNAGLPW-ELGLAETHQ 1214 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvI-sG~~GGTGas~~~si~~~GlP~-~~~Laev~q 1214 (1760)
.+.+++.|+.-++. ++-+.+=+.........+..+.++|+|.+.+ -|.+- .-.|..| +.-|..+.+
T Consensus 92 ~~TI~~~i~~A~~~--~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~----------q~~G~~~~~~~l~~ik~ 159 (217)
T COG0269 92 DATIKKAIKVAKEY--GKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDA----------QAAGKSWGEDDLEKIKK 159 (217)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccH----------hhcCCCccHHHHHHHHH
Confidence 45667778877776 5777788776666666666677799999987 23222 1134444 344444444
Q ss_pred HHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhH
Q 000265 1215 TLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1215 ~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~ 1256 (1760)
. ... .+.|-+.||| +++++-....+|++.|-+|++.
T Consensus 160 ~-~~~----g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraI 195 (217)
T COG0269 160 L-SDL----GAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAI 195 (217)
T ss_pred h-hcc----CceEEEecCC-CHHHHHHHhcCCCCEEEECchh
Confidence 3 222 2778999999 6899999999999999999973
No 470
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=45.59 E-value=1.9e+02 Score=32.96 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=52.8
Q ss_pred ccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000265 1163 EAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1163 ~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
.+....+...+.+..+|+|-+|..-+. ....+.++.+.|++.+.+.+++|++-|..-+. +. +
T Consensus 119 ~~p~~~l~~~~~~~~~d~v~lS~~~~~---------------~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~-~~--~ 180 (201)
T cd02070 119 DVPPEEFVEAVKEHKPDILGLSALMTT---------------TMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQ-EF--A 180 (201)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccc---------------cHHHHHHHHHHHHHCCCCcCCeEEEECCcCCH-HH--H
Confidence 345567778889999999999875332 23456777788888776668999999998885 44 4
Q ss_pred HHcCCCccc
Q 000265 1243 ALLGAEEFG 1251 (1760)
Q Consensus 1243 laLGAdaVg 1251 (1760)
-.+|||++.
T Consensus 181 ~~~GaD~~~ 189 (201)
T cd02070 181 DEIGADGYA 189 (201)
T ss_pred HHcCCcEEE
Confidence 556999874
No 471
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=45.31 E-value=1.4e+02 Score=34.99 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCCceEEEE--ccccCHHHHHHHHHHcCCCEEEEecC
Q 000265 1142 QLIYDLKNANPGARISVKL--VSEAGVGVIASGVVKGHADHVLISGH 1186 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKl--v~~~Gvg~iA~~aakaGAD~IvIsG~ 1186 (1760)
+.|.+||+.+...++-+|+ .++. +...+..+.++|||.|+|-+.
T Consensus 44 ~~i~~l~~~~~~i~~D~Kl~Di~~t-~~~~i~~~~~~gad~itvH~~ 89 (230)
T PRK00230 44 QFVRELKQRGFKVFLDLKLHDIPNT-VAKAVRALAKLGVDMVNVHAS 89 (230)
T ss_pred HHHHHHHhcCCCEEEEeehhhcccc-HHHHHHHHHHcCCCEEEEccc
Confidence 4577888764467778898 4331 223344578999999999764
No 472
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=45.20 E-value=2.4e+02 Score=29.08 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=50.7
Q ss_pred cccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHH
Q 000265 1162 SEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAI 1241 (1760)
Q Consensus 1162 ~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaK 1241 (1760)
+......+...+.+..+|+|.+|...+. +...+.+..+.+++.+. ++++|++.|...+. +.-.
T Consensus 35 ~~~~~~~l~~~~~~~~pdvV~iS~~~~~---------------~~~~~~~~i~~l~~~~~-~~~~i~vGG~~~~~-~~~~ 97 (119)
T cd02067 35 VDVPPEEIVEAAKEEDADAIGLSGLLTT---------------HMTLMKEVIEELKEAGL-DDIPVLVGGAIVTR-DFKF 97 (119)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeccccc---------------cHHHHHHHHHHHHHcCC-CCCeEEEECCCCCh-hHHH
Confidence 4455667778889999999999876332 12344555556665533 36888888888775 3346
Q ss_pred HHHcCCCcccc
Q 000265 1242 AALLGAEEFGF 1252 (1760)
Q Consensus 1242 AlaLGAdaVg~ 1252 (1760)
+..+|||++.-
T Consensus 98 ~~~~G~D~~~~ 108 (119)
T cd02067 98 LKEIGVDAYFG 108 (119)
T ss_pred HHHcCCeEEEC
Confidence 78889998754
No 473
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=45.08 E-value=1.1e+02 Score=36.78 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=49.5
Q ss_pred ceeEEEeeCCCCcHHHHHHHHhcCcccccHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Q 000265 782 RIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMG 861 (1760)
Q Consensus 782 ~~~lvvesge~re~Hh~a~L~GyGA~av~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMG 861 (1760)
++-||. +|.+++..++.-.+-.|||+|-=+=+ .+ .++ .+.+-+.+||.+.|.++|
T Consensus 231 ~ipii~-~GGI~~~~da~~~l~~GAd~V~igra-----------~l--------~~p-----~~~~~i~~~l~~~~~~~g 285 (296)
T cd04740 231 EIPIIG-VGGIASGEDALEFLMAGASAVQVGTA-----------NF--------VDP-----EAFKEIIEGLEAYLDEEG 285 (296)
T ss_pred CCCEEE-ECCCCCHHHHHHHHHcCCCEEEEchh-----------hh--------cCh-----HHHHHHHHHHHHHHHHcC
Confidence 566666 89999999999999999999963311 11 011 345567889999999999
Q ss_pred hhhhhccccc
Q 000265 862 ISTLASYKGA 871 (1760)
Q Consensus 862 Istl~SY~ga 871 (1760)
.++++..+|.
T Consensus 286 ~~~~~~~~g~ 295 (296)
T cd04740 286 IKSIEELVGL 295 (296)
T ss_pred CCCHHHHhCc
Confidence 9999988773
No 474
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=44.67 E-value=37 Score=46.19 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHH
Q 000265 1207 LGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPL 1257 (1760)
Q Consensus 1207 ~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L 1257 (1760)
..+.++.+.+.. ..+||+|-||| +..++..++..||++|.+-++++
T Consensus 153 ~~l~~~~~~~~~----~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~ 198 (755)
T PRK09517 153 DGIAEIAAVAQD----HGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIM 198 (755)
T ss_pred HHHHHHHHhcCc----CCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhh
Confidence 456655554311 14999999999 89999999999999999998876
No 475
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=44.39 E-value=88 Score=37.60 Aligned_cols=95 Identities=20% Similarity=0.146 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEcc---------ccC---HHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccC
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVS---------EAG---VGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAG 1202 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~---------~~G---vg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~G 1202 (1760)
..++.+.+++.+..+. +.|+.+=.-+ ... ++..+..+++.|||+|.+ .+.|
T Consensus 127 ~~i~~~~~v~~~a~~~--Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~-~ytg-------------- 189 (265)
T COG1830 127 EMIENISQVVEDAHEL--GMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKT-KYTG-------------- 189 (265)
T ss_pred HHHHHHHHHHHHHHHc--CCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEee-cCCC--------------
Confidence 4456666666665553 6666551110 011 223345688999999987 3322
Q ss_pred CCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCC-HHH-----HHHHHHcCCCccccchh
Q 000265 1203 LPWELGLAETHQTLVANDLRGRTILQTDGQLKT-GRD-----VAIAALLGAEEFGFSTA 1255 (1760)
Q Consensus 1203 lP~~~~Laev~q~L~~~glr~rV~LiadGGIrt-G~D-----VaKAlaLGAdaVg~GTa 1255 (1760)
-| ....++...+ .+||+.+||=++ ..+ +..++..||.++-+||-
T Consensus 190 ~~--e~F~~vv~~~-------~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRN 239 (265)
T COG1830 190 DP--ESFRRVVAAC-------GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRN 239 (265)
T ss_pred Ch--HHHHHHHHhC-------CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhh
Confidence 22 3445666553 389999999998 222 33567789999988884
No 476
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=44.10 E-value=1.5e+02 Score=32.39 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCC-ceEEEEcCCcC--------CHHHH
Q 000265 1169 IASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRG-RTILQTDGQLK--------TGRDV 1239 (1760)
Q Consensus 1169 iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~-rV~LiadGGIr--------tG~DV 1239 (1760)
++..+.+.|+|+|.+.| ..+..+.+. ..+ +++|++-=|-. +-..+
T Consensus 18 ~~~~~~~~gv~gi~~~g---------------------~~i~~~~~~-----~~~~~~~v~~~v~~~~~~~~~~~~~~~a 71 (201)
T cd00945 18 LCDEAIEYGFAAVCVNP---------------------GYVRLAADA-----LAGSDVPVIVVVGFPTGLTTTEVKVAEV 71 (201)
T ss_pred HHHHHHHhCCcEEEECH---------------------HHHHHHHHH-----hCCCCCeEEEEecCCCCCCcHHHHHHHH
Confidence 34456667888888866 123333333 234 57766532222 23445
Q ss_pred HHHHHcCCCccccchhH
Q 000265 1240 AIAALLGAEEFGFSTAP 1256 (1760)
Q Consensus 1240 aKAlaLGAdaVg~GTa~ 1256 (1760)
-.|..+|||++.+-.++
T Consensus 72 ~~a~~~Gad~i~v~~~~ 88 (201)
T cd00945 72 EEAIDLGADEIDVVINI 88 (201)
T ss_pred HHHHHcCCCEEEEeccH
Confidence 67788999999876544
No 477
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=44.06 E-value=76 Score=38.05 Aligned_cols=74 Identities=14% Similarity=0.137 Sum_probs=40.7
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHH----HHHHcC
Q 000265 1171 SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVA----IAALLG 1246 (1760)
Q Consensus 1171 ~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVa----KAlaLG 1246 (1760)
..+.+.|+|+|.+-|+.|-...- +... ....+..+.+. +.++++|++.=|=.+-.|.+ .|..+|
T Consensus 29 ~~l~~~Gv~gi~~~Gs~GE~~~l---s~~E----r~~~~~~~~~~-----~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G 96 (292)
T PRK03170 29 DYLIANGTDGLVVVGTTGESPTL---THEE----HEELIRAVVEA-----VNGRVPVIAGTGSNSTAEAIELTKFAEKAG 96 (292)
T ss_pred HHHHHcCCCEEEECCcCCccccC---CHHH----HHHHHHHHHHH-----hCCCCcEEeecCCchHHHHHHHHHHHHHcC
Confidence 34556799999998775543111 1110 11233334443 23578877643322334433 356789
Q ss_pred CCccccchhH
Q 000265 1247 AEEFGFSTAP 1256 (1760)
Q Consensus 1247 AdaVg~GTa~ 1256 (1760)
||+|.+..+.
T Consensus 97 ~d~v~~~pP~ 106 (292)
T PRK03170 97 ADGALVVTPY 106 (292)
T ss_pred CCEEEECCCc
Confidence 9999887654
No 478
>PRK08185 hypothetical protein; Provisional
Probab=43.96 E-value=3e+02 Score=33.55 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHH--
Q 000265 1139 DLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL-- 1216 (1760)
Q Consensus 1139 dLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L-- 1216 (1760)
++...+..+-+.. ++||.|-|-....... ...+.++|.+.|.++|.. +|.+.=+..+.+..
T Consensus 55 ~~~~~~~~~a~~~-~vPV~lHLDHg~~~e~-i~~ai~~Gf~SVM~D~S~---------------l~~eeNi~~t~~vv~~ 117 (283)
T PRK08185 55 NFFAYVRERAKRS-PVPFVIHLDHGATIED-VMRAIRCGFTSVMIDGSL---------------LPYEENVALTKEVVEL 117 (283)
T ss_pred HHHHHHHHHHHHC-CCCEEEECCCCCCHHH-HHHHHHcCCCEEEEeCCC---------------CCHHHHHHHHHHHHHH
Confidence 3777777776665 8999999865433334 456889999999999862 35565565555543
Q ss_pred -HhCCCCCceEEEEcCC-------------cCCHHHHHHHHHc-CCC--ccccch
Q 000265 1217 -VANDLRGRTILQTDGQ-------------LKTGRDVAIAALL-GAE--EFGFST 1254 (1760)
Q Consensus 1217 -~~~glr~rV~LiadGG-------------IrtG~DVaKAlaL-GAd--aVg~GT 1254 (1760)
...|+.....|=.-|| +.++.++.++... |+| +|.+||
T Consensus 118 a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt 172 (283)
T PRK08185 118 AHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGT 172 (283)
T ss_pred HHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCc
Confidence 4445443323322232 4478888888876 999 455566
No 479
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=43.91 E-value=46 Score=35.47 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=40.5
Q ss_pred eEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHH
Q 000265 1225 TILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAE 1304 (1760)
Q Consensus 1225 V~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ 1304 (1760)
|+|-.+|. -+..-|.+|+.-|||+|-+.. ||.+.|+-.- +.... ..-.+
T Consensus 32 IrvpC~Gr-v~~~~il~Af~~GADGV~V~g-------------C~~g~Ch~~~-------------Gn~~a----~~Rv~ 80 (124)
T PF02662_consen 32 IRVPCSGR-VDPEFILRAFEKGADGVLVAG-------------CHPGDCHYRE-------------GNYRA----EKRVE 80 (124)
T ss_pred EEccCCCc-cCHHHHHHHHHcCCCEEEEeC-------------CCCCCCCcch-------------hhHHH----HHHHH
Confidence 44444555 578999999999999997754 8889998321 11111 12234
Q ss_pred HHHHHHHhcCCC
Q 000265 1305 ELREIMSQLGFR 1316 (1760)
Q Consensus 1305 ELr~~Ma~lG~~ 1316 (1760)
.++++|..+|+.
T Consensus 81 ~~k~~L~~~Gi~ 92 (124)
T PF02662_consen 81 RLKKLLEELGIE 92 (124)
T ss_pred HHHHHHHHcCCC
Confidence 677888888864
No 480
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=43.87 E-value=34 Score=39.23 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEccccCHHH-HHHHHHHcCCCEEEE
Q 000265 1137 IEDLAQLIYDLKNANPGARISVKLVSEAGVGV-IASGVVKGHADHVLI 1183 (1760)
Q Consensus 1137 iedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~-iA~~aakaGAD~IvI 1183 (1760)
.|+....+++||+.+|..-|-|-. |++. ....+++|||+.|+.
T Consensus 153 me~mm~KV~~lR~kyp~l~ievDG----Gv~~~ti~~~a~AGAN~iVa 196 (224)
T KOG3111|consen 153 MEDMMPKVEWLREKYPNLDIEVDG----GVGPSTIDKAAEAGANMIVA 196 (224)
T ss_pred HHHHHHHHHHHHHhCCCceEEecC----CcCcchHHHHHHcCCCEEEe
Confidence 477788899999999876665543 3332 235688999999875
No 481
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=43.56 E-value=62 Score=41.94 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCC
Q 000265 1168 VIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGA 1247 (1760)
..+..+.++|+|.|+||-..|- +.-....+.++.+.. .++ .+..|-+.|...+..++.+||
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~------------~~~~~~~i~~ik~~~------p~~-~v~agnv~t~~~a~~l~~aGa 290 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGH------------QEKMLEALRAVRALD------PGV-PIVAGNVVTAEGTRDLVEAGA 290 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCc------------cHHHHHHHHHHHHHC------CCC-eEEeeccCCHHHHHHHHHcCC
Confidence 3456688899999999876442 111233444444431 123 566799999999999999999
Q ss_pred Cccc--cch
Q 000265 1248 EEFG--FST 1254 (1760)
Q Consensus 1248 daVg--~GT 1254 (1760)
|+|. ||+
T Consensus 291 d~v~vgig~ 299 (479)
T PRK07807 291 DIVKVGVGP 299 (479)
T ss_pred CEEEECccC
Confidence 9754 555
No 482
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.43 E-value=1.5e+02 Score=33.76 Aligned_cols=80 Identities=20% Similarity=0.149 Sum_probs=46.8
Q ss_pred HHHHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCC
Q 000265 1142 QLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDL 1221 (1760)
Q Consensus 1142 qlI~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~gl 1221 (1760)
+++..+++..+...+..-.+ . +-.-+..+.++|||+|++ ||.+ . -+.++.+ .++
T Consensus 52 e~~~~~~~~~~~~~~g~gtv--l-~~d~~~~A~~~gAdgv~~-p~~~--------------~----~~~~~~~---~~~- 105 (187)
T PRK07455 52 ELISQLREKLPECIIGTGTI--L-TLEDLEEAIAAGAQFCFT-PHVD--------------P----ELIEAAV---AQD- 105 (187)
T ss_pred HHHHHHHHhCCCcEEeEEEE--E-cHHHHHHHHHcCCCEEEC-CCCC--------------H----HHHHHHH---HcC-
Confidence 45555555544333322211 1 124566788999999966 4322 1 1122222 222
Q ss_pred CCceEEEEcCCcCCHHHHHHHHHcCCCcccc
Q 000265 1222 RGRTILQTDGQLKTGRDVAIAALLGAEEFGF 1252 (1760)
Q Consensus 1222 r~rV~LiadGGIrtG~DVaKAlaLGAdaVg~ 1252 (1760)
++.+ -| ..|..++.+|..+|||-|++
T Consensus 106 ---~~~i-~G-~~t~~e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 106 ---IPII-PG-ALTPTEIVTAWQAGASCVKV 131 (187)
T ss_pred ---CCEE-cC-cCCHHHHHHHHHCCCCEEEE
Confidence 3333 34 99999999999999999987
No 483
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=43.01 E-value=1.2e+02 Score=36.77 Aligned_cols=81 Identities=15% Similarity=0.063 Sum_probs=52.8
Q ss_pred HHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCC
Q 000265 1144 IYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRG 1223 (1760)
Q Consensus 1144 I~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~ 1223 (1760)
|..+|+.. +.||+-|.- .|.-.-|..++++|+|+| + .|... .| +.+.+...+.. .
T Consensus 57 I~~Ik~~V-~iPVIGi~K--~~~~~Ea~~L~eaGvDiI--D----aT~r~---------rP----~~~~~~~iK~~-~-- 111 (283)
T cd04727 57 IKEIMDAV-SIPVMAKVR--IGHFVEAQILEALGVDMI--D----ESEVL---------TP----ADEEHHIDKHK-F-- 111 (283)
T ss_pred HHHHHHhC-CCCeEEeee--hhHHHHHHHHHHcCCCEE--e----ccCCC---------Cc----HHHHHHHHHHH-c--
Confidence 66777765 899976541 243455677999999999 3 22111 13 24444444432 1
Q ss_pred ceEEEEcCCcCCHHHHHHHHHcCCCccc
Q 000265 1224 RTILQTDGQLKTGRDVAIAALLGAEEFG 1251 (1760)
Q Consensus 1224 rV~LiadGGIrtG~DVaKAlaLGAdaVg 1251 (1760)
++++++ +++|-.+...|..+|||.|+
T Consensus 112 ~~l~MA--D~stleEal~a~~~Gad~I~ 137 (283)
T cd04727 112 KVPFVC--GARNLGEALRRISEGAAMIR 137 (283)
T ss_pred CCcEEc--cCCCHHHHHHHHHCCCCEEE
Confidence 355554 68899999999999999873
No 484
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=42.89 E-value=20 Score=45.47 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=30.4
Q ss_pred CCCceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 112 KDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 112 ~DaCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
++.|||..|..-+. ....+.....|-.|+|||= ++|||.+
T Consensus 2 ~e~CGV~Gi~~~~~---~~a~~~~y~gL~aLQHRGQ--------eaAGI~~ 41 (470)
T COG0034 2 REMCGVFGIWGHKD---NNAAQLTYYGLYALQHRGQ--------EAAGIAV 41 (470)
T ss_pred cccceEEEEecCCc---cchHHHHHHHHHHHhhCCc--------ccccEEE
Confidence 67899988876655 2356667778888899994 6889987
No 485
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=42.79 E-value=76 Score=41.39 Aligned_cols=74 Identities=15% Similarity=0.065 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCcEEEEcCCC--CCCCC----ccccHHHHHHHHHHHH----HHcCCCCceeEEEeeCCCCcHHHHHHHHh
Q 000265 734 AEARDAIKEGYTLLVLSDRA--FSSKR----VAVSSLLAVGAVHHHL----VKNLERTRIGLIVESAEPREVHHFCTLVG 803 (1760)
Q Consensus 734 ~~a~~av~~G~~iliLsDr~--~~~~~----~~ip~lLav~avh~~L----i~~~~R~~~~lvvesge~re~Hh~a~L~G 803 (1760)
+.|.++++.|+..|.++=-. +...| +..|.+-|+..+.... -+.|. ++-+|.. |-+|..-|++..|.
T Consensus 296 e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~--~~~viad-gGir~~gdi~KAla 372 (502)
T PRK07107 296 EGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGV--YIPICSD-GGIVYDYHMTLALA 372 (502)
T ss_pred HHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCC--cceEEEc-CCCCchhHHHHHHH
Confidence 56777889999999884321 11113 6788888888776654 23353 3777876 66899999999999
Q ss_pred cCccccc
Q 000265 804 FGADAIC 810 (1760)
Q Consensus 804 yGA~av~ 810 (1760)
+|||+|-
T Consensus 373 ~GA~~vm 379 (502)
T PRK07107 373 MGADFIM 379 (502)
T ss_pred cCCCeee
Confidence 9999994
No 486
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=42.79 E-value=2.3e+02 Score=35.42 Aligned_cols=33 Identities=12% Similarity=0.012 Sum_probs=23.4
Q ss_pred eEEEEcCCcCCHHHHH----HHHHcCC--CccccchhHHH
Q 000265 1225 TILQTDGQLKTGRDVA----IAALLGA--EEFGFSTAPLI 1258 (1760)
Q Consensus 1225 V~LiadGGIrtG~DVa----KAlaLGA--daVg~GTa~L~ 1258 (1760)
..|+++||. +-.++. .|+..|| .+|.+||....
T Consensus 243 P~vvlsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq 281 (340)
T PRK12858 243 PFIFLSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQ 281 (340)
T ss_pred CEEEECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHh
Confidence 345568887 555443 5788999 99999997554
No 487
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=42.36 E-value=2.4e+02 Score=34.93 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=54.2
Q ss_pred HHHHcCCCEEEEe-c--------CCCCCCCCccccccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHH
Q 000265 1172 GVVKGHADHVLIS-G--------HDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1172 ~aakaGAD~IvIs-G--------~~GGTGas~~~si~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKA 1242 (1760)
.|++|||++|..= | ..|+... .....|....+.++++.++.+|.. +.+....+|+..+|..
T Consensus 164 aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~------~~~~d~Gv~~v~~i~~~~k~~g~~---T~Im~ASfRn~~qv~~- 233 (317)
T TIGR00874 164 ACAEAKVTLISPFVGRILDWYKAATGKKEY------SIEEDPGVASVKKIYNYYKKHGYP---TEVMGASFRNKEEILA- 233 (317)
T ss_pred HHHHcCCCEEEeecchHhHhhhhccCcccc------ccccCchHHHHHHHHHHHHHcCCC---cEEEeeccCCHHHHHH-
Confidence 4888999888541 1 0111111 112257778889999998887763 4556778999999997
Q ss_pred HHcCCCccccchhHHHHh
Q 000265 1243 ALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1243 laLGAdaVg~GTa~L~Al 1260 (1760)
+.|+|.+-+.-..|-.|
T Consensus 234 -laG~d~~Ti~p~ll~~L 250 (317)
T TIGR00874 234 -LAGCDRLTISPALLDEL 250 (317)
T ss_pred -HHCCCeEeCCHHHHHHH
Confidence 67999998887777655
No 488
>PTZ00411 transaldolase-like protein; Provisional
Probab=42.17 E-value=1.7e+02 Score=36.39 Aligned_cols=104 Identities=12% Similarity=0.118 Sum_probs=66.6
Q ss_pred HHHHHHhCCCCceEEEEccccCHHHHHHHHHHcCCCEEEE-----ecC-CCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 000265 1144 IYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLI-----SGH-DGGTGASRWTGIKNAGLPWELGLAETHQTLV 1217 (1760)
Q Consensus 1144 I~~Lk~~~p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvI-----sG~-~GGTGas~~~si~~~GlP~~~~Laev~q~L~ 1217 (1760)
++.|... +.++.+-++-. + .-|..|+++||++|.. ..+ .-..+... ....+.|....+.++++.++
T Consensus 153 a~~L~~e--GI~~N~TlvFS--~-~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~---~~~~~~~Gv~~v~~i~~~~k 224 (333)
T PTZ00411 153 AKALEKE--GIHCNLTLLFS--F-AQAVACAQAGVTLISPFVGRILDWYKKPEKAES---YVGAQDPGVISVTKIYNYYK 224 (333)
T ss_pred HHHHHHC--CCceeEeEecC--H-HHHHHHHHcCCCEEEeecchHHHhccccccccc---ccccCCchHHHHHHHHHHHH
Confidence 5555544 45555554321 1 2345688999999864 111 00000000 11236678888999999998
Q ss_pred hCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHh
Q 000265 1218 ANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1218 ~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
.+|.. +.+....+|+..+|.. ++|+|.+-+.-..|-.+
T Consensus 225 ~~g~~---T~Im~ASfRn~~qi~~--laG~D~lTi~p~ll~~L 262 (333)
T PTZ00411 225 KHGYK---TIVMGASFRNTGEILE--LAGCDKLTISPKLLEEL 262 (333)
T ss_pred HcCCC---eEEEecccCCHHHHHH--HHCCCEEeCCHHHHHHH
Confidence 87753 5777889999999997 48999998888777765
No 489
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=41.18 E-value=2.6e+02 Score=34.63 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHh
Q 000265 1204 PWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1204 P~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
|....+.++++.++..|.. +.+....+|+..+|.. +.|+|.+-+.-..|-.|
T Consensus 199 ~Gv~~v~~i~~~~~~~~~~---T~vmaASfRn~~~v~~--laG~d~~Ti~p~ll~~L 250 (313)
T cd00957 199 PGVASVKKIYNYYKKFGYK---TKVMGASFRNIGQILA--LAGCDYLTISPALLEEL 250 (313)
T ss_pred cHHHHHHHHHHHHHHcCCC---cEEEecccCCHHHHHH--HhCCCeEEcCHHHHHHH
Confidence 6677888999998887753 3555778999999996 68999999998877766
No 490
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=40.91 E-value=26 Score=46.37 Aligned_cols=40 Identities=38% Similarity=0.611 Sum_probs=29.5
Q ss_pred CceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 114 SCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 114 aCGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
+|||.+|.+.++.. ....+.+..|+.+|.|||- |+.|+.+
T Consensus 1 MCGI~gi~~~~~~~-~~~~~~~~~m~~~l~HRGP--------D~~g~~~ 40 (586)
T PTZ00077 1 MCGILAIFNSKGER-HELRRKALELSKRLRHRGP--------DWSGIIV 40 (586)
T ss_pred CceEEEEEecCCch-hhHHHHHHHHHHHHhCCCC--------CcCCEEE
Confidence 69998888776654 2233557789999999995 6777764
No 491
>PRK09206 pyruvate kinase; Provisional
Probab=40.83 E-value=2e+02 Score=37.47 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHhC-CCCceEEEEccccCHHHHHHHHHHcCCCEEEEecCCCCCCCCccccccccCCCHH-HHHHHH
Q 000265 1135 YSIEDLAQLIYDLKNAN-PGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWE-LGLAET 1212 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~-p~~pV~VKlv~~~Gvg~iA~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~~-~~Laev 1212 (1760)
.+.+|+.++-..+...+ ...+|++|.-...|+..+-.-+ +. +|+|.|.=.+=| -..|.|-. ....++
T Consensus 195 r~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl-~~-~DgImVaRGDLg---------velg~e~vp~~qk~i 263 (470)
T PRK09206 195 RKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEIL-EA-SDGIMVARGDLG---------VEIPVEEVIFAQKMM 263 (470)
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHH-Hh-CCEEEECcchhh---------hhcCHHHHHHHHHHH
Confidence 45667666555565554 3678999985444555544333 33 999999321111 12222211 123344
Q ss_pred HHHHHhCCCCCceEEEEcCCcC------------CHHHHHHHHHcCCCccccch
Q 000265 1213 HQTLVANDLRGRTILQTDGQLK------------TGRDVAIAALLGAEEFGFST 1254 (1760)
Q Consensus 1213 ~q~L~~~glr~rV~LiadGGIr------------tG~DVaKAlaLGAdaVg~GT 1254 (1760)
.+.+.+. ..|+|++..+- --.||+.|+.-|||+|++..
T Consensus 264 i~~~~~~----gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ 313 (470)
T PRK09206 264 IEKCNRA----RKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSG 313 (470)
T ss_pred HHHHHHc----CCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEec
Confidence 4444544 37888888873 35799999999999998854
No 492
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=40.63 E-value=1.2e+02 Score=37.28 Aligned_cols=112 Identities=19% Similarity=0.232 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCcEEEEcCCC----CCCCC-ccc-------cHH--HHHHHHHHHHHHcCCCCceeEEEeeCCCCcHHH
Q 000265 732 ICAEARDAIKEGYTLLVLSDRA----FSSKR-VAV-------SSL--LAVGAVHHHLVKNLERTRIGLIVESAEPREVHH 797 (1760)
Q Consensus 732 l~~~a~~av~~G~~iliLsDr~----~~~~~-~~i-------p~l--Lav~avh~~Li~~~~R~~~~lvvesge~re~Hh 797 (1760)
+.+-|..+.+.|+.-|+++.+. ++.+. .+. |.+ +++..|.. ++ .+.++-||. +|-+++..+
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~--v~--~~~~ipIig-~GGI~s~~D 251 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAI--LS--GRVKASLAA-SGGVHDAED 251 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHH--HH--cccCCCEEE-ECCCCCHHH
Confidence 3344445566799999999884 22111 111 111 22222221 12 233677777 899999999
Q ss_pred HHHHHhcCcccccHHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhhhccccc
Q 000265 798 FCTLVGFGADAICPYLATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGA 871 (1760)
Q Consensus 798 ~a~L~GyGA~av~Pyla~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ny~~a~~~GllKvmsKMGIstl~SY~ga 871 (1760)
+.-.|=.||++|-=|-+ +..+| + .+..=+.++|...|.+.|+++|+..+|+
T Consensus 252 a~e~l~aGA~~Vqv~ta------~~~~g--------p---------~~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 252 VVKYLLAGADVVMTTSA------LLRHG--------P---------DYIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred HHHHHHcCCCeeEEehh------hhhcC--------c---------hHHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 99888899999964422 11122 0 3566688899999999999999998774
No 493
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=40.18 E-value=4.2e+02 Score=31.60 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCCC--ceEEEEcCC--cCCHHHHHHHHHcCCCccccchhHHHHh
Q 000265 1210 AETHQTLVANDLRG--RTILQTDGQ--LKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1210 aev~q~L~~~glr~--rV~LiadGG--IrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
..+.+++.+.+++- +-.+....| +.|...+.....+|||.|+|-+++.+.+
T Consensus 137 ~~~~~~a~~~~~~~~~~Gvy~~~~GP~feT~AE~r~lr~~Gad~VgMs~~pEa~~ 191 (245)
T PRK09136 137 QRLLAAARAAGVSLVDGGVYAATQGPRLETAAEIARLERDGCDLVGMTGMPEAAL 191 (245)
T ss_pred HHHHHHHHHcCCcEEeccEEEEeeCCCcCCHHHHHHHHHcCCCEEcCcHHHHHHH
Confidence 33555565555541 122333444 8899999888889999999999987654
No 494
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=39.81 E-value=1e+02 Score=40.01 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEccccCHHHH-HHHHHHcCCCEEEE--ecCCCCCC
Q 000265 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVI-ASGVVKGHADHVLI--SGHDGGTG 1191 (1760)
Q Consensus 1135 ySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~i-A~~aakaGAD~IvI--sG~~GGTG 1191 (1760)
.++....++|..||+..+ .||.+..=...|.+.. +..|+++|||.|.. +|.++|+|
T Consensus 179 l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~gag 237 (467)
T PRK14041 179 LTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSMGTS 237 (467)
T ss_pred cCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCCCCC
Confidence 457788999999999874 8998887545677664 35588999999865 45555543
No 495
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=39.62 E-value=30 Score=39.68 Aligned_cols=38 Identities=39% Similarity=0.677 Sum_probs=26.7
Q ss_pred ceEEEEEEeCCCCchHhHHHHHHHHhcccccCCCCCCCCCCCcceeec
Q 000265 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162 (1760)
Q Consensus 115 CGVGfia~~~g~~sh~iv~~al~~L~~M~HRGa~~~d~~tGDGAGil~ 162 (1760)
|||.++...++.. ...+....|+..|+|||. |++|+.+
T Consensus 1 cGI~g~~~~~~~~--~~~~~~~~~~~~l~hRGp--------d~~~~~~ 38 (220)
T cd00712 1 CGIAGIIGLDGAS--VDRATLERMLDALAHRGP--------DGSGIWI 38 (220)
T ss_pred CeEEEEEeCCCCc--chHHHHHHHHHHHhccCC--------CCCCEEE
Confidence 9997777655422 234556789999999995 5667654
No 496
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=39.61 E-value=3.2e+02 Score=33.31 Aligned_cols=109 Identities=11% Similarity=-0.059 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEccccCHHH---HHHHHHHcCCCEEEE-e-------cCCCCCCCCccccccccC
Q 000265 1134 IYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGV---IASGVVKGHADHVLI-S-------GHDGGTGASRWTGIKNAG 1202 (1760)
Q Consensus 1134 iySiedLaqlI~~Lk~~~p~~pV~VKlv~~~Gvg~---iA~~aakaGAD~IvI-s-------G~~GGTGas~~~si~~~G 1202 (1760)
+.+.+++.+.+..+.... ..||++-.-...+... .....+++|+.+|.| | ||-|+++-.+ -
T Consensus 60 ~~~~~e~~~~~~~I~~a~-~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~-------l 131 (285)
T TIGR02320 60 EASWTQRLDVVEFMFDVT-TKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQP-------Q 131 (285)
T ss_pred cCCHHHHHHHHHHHHhhc-CCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCccc-------c
Confidence 456788877787777665 7899887643311222 245578999999999 2 3333332111 2
Q ss_pred CCHHHHHHHHHHHHHhCCCCCceEEEEc-----CCcCCHHHH----HHHHHcCCCcccc
Q 000265 1203 LPWELGLAETHQTLVANDLRGRTILQTD-----GQLKTGRDV----AIAALLGAEEFGF 1252 (1760)
Q Consensus 1203 lP~~~~Laev~q~L~~~glr~rV~Liad-----GGIrtG~DV----aKAlaLGAdaVg~ 1252 (1760)
+|.++.+..+..+.... ...+++|+|= .+. .-.+. -.+..+|||.+.+
T Consensus 132 ~s~ee~~~kI~Aa~~a~-~~~~~~IiARTDa~~~~~-~~~eAi~Ra~ay~eAGAD~ifv 188 (285)
T TIGR02320 132 ASVEEFCGKIRAGKDAQ-TTEDFMIIARVESLILGK-GMEDALKRAEAYAEAGADGIMI 188 (285)
T ss_pred cCHHHHHHHHHHHHHhc-cCCCeEEEEecccccccC-CHHHHHHHHHHHHHcCCCEEEe
Confidence 45666665555443331 1246777764 111 12222 2457889998865
No 497
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=39.42 E-value=68 Score=38.56 Aligned_cols=77 Identities=21% Similarity=0.265 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCCEEEEe-c-CCCCC-CCCccccccccCCCHHHHHHHHHHHHHh-CCCCCce-EEEEcCCcCCHHHHHHH
Q 000265 1168 VIASGVVKGHADHVLIS-G-HDGGT-GASRWTGIKNAGLPWELGLAETHQTLVA-NDLRGRT-ILQTDGQLKTGRDVAIA 1242 (1760)
Q Consensus 1168 ~iA~~aakaGAD~IvIs-G-~~GGT-Gas~~~si~~~GlP~~~~Laev~q~L~~-~glr~rV-~LiadGGIrtG~DVaKA 1242 (1760)
.-|...++||||+|++- | ..||+ |+.. +.+...+...+.+.... ..++.++ .|.--|-|.++.|+...
T Consensus 161 e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~-------~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~ 233 (268)
T PF09370_consen 161 EQARAMAEAGADIIVAHMGLTTGGSIGAKT-------ALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYV 233 (268)
T ss_dssp HHHHHHHHHT-SEEEEE-SS-----------------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHH
T ss_pred HHHHHHHHcCCCEEEecCCccCCCCcCccc-------cCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 34566789999999873 2 12222 2211 23334444444332221 1355554 45556669999999988
Q ss_pred HHcCCCccc
Q 000265 1243 ALLGAEEFG 1251 (1760)
Q Consensus 1243 laLGAdaVg 1251 (1760)
+..-....|
T Consensus 234 l~~t~~~~G 242 (268)
T PF09370_consen 234 LRNTKGIHG 242 (268)
T ss_dssp HHH-TTEEE
T ss_pred HhcCCCCCE
Confidence 876543333
No 498
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=39.40 E-value=93 Score=35.39 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=24.3
Q ss_pred CCCcEEEec--CCceEEEccCCCCCCCceEEEEeCCEEE
Q 000265 451 DGPALISFT--DGRYLGATLDRNGLRPGRFYITHSGRVI 487 (1760)
Q Consensus 451 dGPa~iv~t--dG~~igA~lDrnGLRPlr~~~t~d~~~i 487 (1760)
.|-+++..- +|++.. ..|++|+-|+ |++..+..|+
T Consensus 99 EGdfcffiE~kng~L~l-~Tds~G~~pv-~lV~~~~~Wi 135 (201)
T PF09147_consen 99 EGDFCFFIEDKNGELTL-ITDSRGFNPV-YLVQSKFIWI 135 (201)
T ss_dssp -SSEEEEEEETTSEEEE-EE-SSSSS-E-EEEESSSEEE
T ss_pred cCceEEEEecCCCcEEE-EecCCCCceE-EEEecCceEE
Confidence 788877664 577776 7899999999 7776666665
No 499
>PRK12376 putative translaldolase; Provisional
Probab=39.18 E-value=2.3e+02 Score=33.70 Aligned_cols=59 Identities=15% Similarity=0.070 Sum_probs=42.9
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCCCCceEEEEcCCcCCHHHHHHHHHcCCCccccchhHHHHh
Q 000265 1198 IKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITL 1260 (1760)
Q Consensus 1198 i~~~GlP~~~~Laev~q~L~~~glr~rV~LiadGGIrtG~DVaKAlaLGAdaVg~GTa~L~Al 1260 (1760)
+++.|......+.++++.+... .++.|++ .-+|+..+|.+++++|||.+-+.-..+-.+
T Consensus 148 ~dd~g~D~~~~i~~i~~i~~~~---~~tkILa-ASiR~~~~v~~a~~~Gad~vTvp~~v~~~l 206 (236)
T PRK12376 148 IADTGVDPVPLMKEALAICHSK---PGVELLW-ASPREVYNIIQADQLGCDIITVTPDVLKKL 206 (236)
T ss_pred hhhcCCCcHHHHHHHHHHHHhC---CCcEEEE-EecCCHHHHHHHHHcCCCEEEcCHHHHHHH
Confidence 3456666667788888877542 2455554 469999999999999999998777666543
No 500
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=38.94 E-value=2e+02 Score=35.14 Aligned_cols=116 Identities=8% Similarity=-0.060 Sum_probs=69.9
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCccccccccCCCH--HHHHHHHHHHHHhCCCCCceEEEEcCCcCCH-HHHHHHHHcCC
Q 000265 1171 SGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPW--ELGLAETHQTLVANDLRGRTILQTDGQLKTG-RDVAIAALLGA 1247 (1760)
Q Consensus 1171 ~~aakaGAD~IvIsG~~GGTGas~~~si~~~GlP~--~~~Laev~q~L~~~glr~rV~LiadGGIrtG-~DVaKAlaLGA 1247 (1760)
.-+.+.|+|.+-|+- |-.|+.. .+ |- ...|.++++.+ ++||..-||=.++ .|+.+|+.+|.
T Consensus 160 ~Fv~~TgvD~LAvai--Gt~HG~Y------~~-p~l~~~~l~~I~~~~-------~vPLVlHGgSG~~~e~~~~ai~~Gi 223 (283)
T PRK07998 160 DFVERTGCDMLAVSI--GNVHGLE------DI-PRIDIPLLKRIAEVS-------PVPLVIHGGSGIPPEILRSFVNYKV 223 (283)
T ss_pred HHHHHhCcCeeehhc--cccccCC------CC-CCcCHHHHHHHHhhC-------CCCEEEeCCCCCCHHHHHHHHHcCC
Confidence 336678899887763 2222211 12 32 35677777652 6899999998887 66778999999
Q ss_pred CccccchhHHHHhccccccccccCCCCCcccccChhhHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000265 1248 EEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFR 1316 (1760)
Q Consensus 1248 daVg~GTa~L~Algc~~~r~ch~~~cP~giatqdp~Lr~~~~g~~e~V~n~~~~l~~ELr~~Ma~lG~~ 1316 (1760)
.-|.++|.+..+..-.+..... .+|. .++ -..-.....+.+.+.+++.|..+|..
T Consensus 224 ~KiNi~Tel~~a~~~~~~~~l~----------~~~~---~~d-~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 224 AKVNIASDLRKAFITTVGKAYV----------NNHN---EAN-LARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred cEEEECHHHHHHHHHHHHHHHH----------hCcC---cCC-HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999987764322100000 0000 000 01223444566778888888888753
Done!