RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 000266
(1760 letters)
>gnl|CDD|236968 PRK11750, gltB, glutamate synthase subunit alpha; Provisional.
Length = 1485
Score = 1674 bits (4338), Expect = 0.0
Identities = 694/1544 (44%), Positives = 945/1544 (61%), Gaps = 70/1544 (4%)
Query: 104 GLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVA 163
GLYDP ++D+CG G +A + GE S K + A+ L RM HRG + TGDG G+L+
Sbjct: 4 GLYDPSLERDNCGFGLIAHMEGEPSHKLVRTAIHALARMTHRGGIAADGKTGDGCGLLLQ 63
Query: 164 LPHDFFKEAAKNVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRA 223
P FF+ A+ G++L YAVGM FL Q ++++ + + +V+GWR
Sbjct: 64 KPDRFFRAVAEEAGWRLAK--NYAVGMVFLNQDPELAAAARRILEEELQRETLSVVGWRE 121
Query: 224 VPTDNSGLGNSALQTEPVVEQVFL-TPSLRSKVDFENQMYILRRVSMAAIRESLNLEHGG 282
VPT+ S LG AL + P +EQVF+ P+ + DFE +++I RR + +
Sbjct: 122 VPTNPSVLGEIALSSLPRIEQVFVNAPAGWRERDFERRLFIARRRIEKRLADD------- 174
Query: 283 AKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRA 342
KDFY+CSLS+ ++YKG + P + +Y DL + R S + + H RFSTNT P W A
Sbjct: 175 -KDFYVCSLSNLVIIYKGLMMPADLPRFY-LDLADLRLESAICVFHQRFSTNTLPRWPLA 232
Query: 343 QPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDG 402
QP R L HNGEINT+ GN W +AR + + ++++ P V+ + SDS + D
Sbjct: 233 QPFRYLAHNGEINTITGNRQWARARAYKFQTPLI----PDLQEAAPFVNETGSDSSSLDN 288
Query: 403 VLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGR 462
+LELL+ G L A+ +++P AWQN+ +MDP +A YE+ S MEPWDGPA I TDGR
Sbjct: 289 MLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTDGR 348
Query: 463 YLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRI 522
Y LDRNGLRP R+ IT + +ASEVG+ D P++V+ KGR+ PG +L++D
Sbjct: 349 YAACNLDRNGLRPARYVITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVIDTRTGR 408
Query: 523 VVDDEALKQQYSLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNMEN 582
++ + PY EWL++ L E + V DDD
Sbjct: 409 ILHSAEIDNDLKSRHPYKEWLEKNVRRLVPFEELPDEQ---------VGSRELDDDT--- 456
Query: 583 MGIHGLLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQ 642
L + K F Y+ E L+ ++ +A++G EA+GSMG+D P+AV+S++ + ++YF+Q
Sbjct: 457 -----LKSYQKQFQYSFEELDQVIRVLAENGQEAVGSMGDDTPMAVLSSQPRSIYDYFRQ 511
Query: 643 MFAQVTNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRM 702
FAQVTNPPIDP+RE V S+ IG E + TE HR+ K P+LS + + + +
Sbjct: 512 QFAQVTNPPIDPLREAHVMSLATCIGREMNVFCETEGHAHRVIFKSPVLSYSDFKQLTTL 571
Query: 703 NYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVS 762
+ +R+ LD+ Y D GLE + R+C EA A+++G LLVLSDR + R+ +
Sbjct: 572 DEEHYRADTLDLNY--DPEETGLEAAIKRLCDEAEQAVRDGTVLLVLSDRNIAKGRLPIP 629
Query: 763 SLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQ 822
+ +AVGAV H LV R +IVE+A R+ HHF L+GFGA A+ PYLA E + L
Sbjct: 630 AAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYLAYETLGDLV 689
Query: 823 VDGKIPPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSE 882
G+I +++ Y K N G+ K+++KMGIST+ASY+G+Q+FEA+GL +
Sbjct: 690 DTGEILKDYR-------QVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLFEAVGLHDD 742
Query: 883 VIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRI-LPPGSAEAVALPNPGDYHWRKG 941
V++ CF G SR+ GA+FE D +L + A+ R + G G + G
Sbjct: 743 VVDLCFKGVVSRIGGASFEDFEQDQKNLSKRAWLARKPIDQG----------GLLKYVHG 792
Query: 942 GEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVKIPLEEV 1001
GE H +P + LQ+A + + Y+EY+K + E LR LL K AD IPL+EV
Sbjct: 793 GEYHAYNPDVVNTLQKAVQSGDYSDYQEYAKLVNE-RPVATLRDLLALKPADNPIPLDEV 851
Query: 1002 EPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMN 1061
EPA E+ KRF + AMS G++S EAH LA AMN++GG+SN+GEGGE P+R G+
Sbjct: 852 EPAEELFKRFDSAAMSIGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARY-----GTE- 905
Query: 1062 PKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTA 1121
K S IKQVASGRFGV+ YL NA+ LQIK+AQGAKPGEGG+LPG KV IA R S
Sbjct: 906 -KVSKIKQVASGRFGVTPAYLVNAEVLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVP 964
Query: 1122 GVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHV 1181
GV LISPPPHHDIYSIEDLAQLI+DLK NP A +SVKLVSE GVG IA+GV K +AD +
Sbjct: 965 GVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLI 1024
Query: 1182 LISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAI 1241
ISG+DGGTGAS T +K AG PWELGLAETHQ LVAN LR + LQ DG LKTG DV
Sbjct: 1025 TISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIK 1084
Query: 1242 AALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREK-FAGEPEHVINFFF 1300
AA+LGAE FGF T P++ LGC +R CH N C G+ATQD LR+ + G PE V+N+F
Sbjct: 1085 AAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFE 1144
Query: 1301 MLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPAADLRPEA 1360
+AEE RE M+QLG R++ ++IGR+D+LE + K + +DLS LL A+
Sbjct: 1145 FIAEETREWMAQLGVRSLEDLIGRTDLLEE---LEGETAKQQKLDLSPLLE-TAEPPAGK 1200
Query: 1361 AQYCVQKQDHGLDMA-LDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRY 1419
A YC ++++ D L++++++ +K A+E + N +R+VG LS E+ +R+
Sbjct: 1201 ALYCTEERNPPFDKGLLNEQMLQQAKPAIEAKQGGEFWFDIRNTDRSVGARLSGEIARRH 1260
Query: 1420 HLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSL 1479
G+ I ++ TG+AGQS G + G+ L LEGD+NDYVGKG++GGKIV PP GS
Sbjct: 1261 GNQGMADAPIKLRFTGTAGQSFGVWNAGGLELYLEGDANDYVGKGMAGGKIVIRPPVGSA 1320
Query: 1480 FDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVV 1539
F +IGN LYGAT G+ + G A ERF VRNSGA AVVEG+GDHGCEYMTGG V
Sbjct: 1321 FRSHETAIIGNTCLYGATGGKLFAAGRAGERFAVRNSGAIAVVEGIGDHGCEYMTGGIVC 1380
Query: 1540 VLGKTGRNFAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDI-ITLRMMIQQHQR 1598
VLGKTG NF AGM+GG AYVLD DG F R N ELV++ +VE+ E LR +I +H
Sbjct: 1381 VLGKTGVNFGAGMTGGFAYVLDEDGDFVDRVNHELVEILRVEDLEIHREHLRGLITEHVE 1440
Query: 1599 YTNSQLAKEVLADFENLLPKFIKVFPR--DYKRVLASMKVAAAQ 1640
T S+ +E+LA+F++ L KF V P+ D K +L +AA+
Sbjct: 1441 ETGSEWGEEILANFDDYLRKFWLVKPKAADVKALLGHRSRSAAE 1484
>gnl|CDD|238365 cd00713, GltS, Glutamine amidotransferases class-II (Gn-AT),
glutamate synthase (GltS)-type. GltS is a homodimer that
synthesizes L-glutamate from 2-oxoglutarate and
L-glutamine, an important step in ammonia assimilation
in bacteria, cyanobacteria and plants. The N-terminal
glutaminase domain catalyzes the hydrolysis of glutamine
to glutamic acid and ammonia, and has a fold similar to
that of other glutamine amidotransferases such as
glucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), and beta lactam synthetase (beta-LS), as well as
the Ntn hydrolase folds of the proteasomal alpha and
beta subunits.
Length = 413
Score = 702 bits (1814), Expect = 0.0
Identities = 244/424 (57%), Positives = 302/424 (71%), Gaps = 12/424 (2%)
Query: 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAK 174
CGVGFVA + G+ S + DALE L RM HRG G + TGDGAGIL+ +PH+FF+E
Sbjct: 1 CGVGFVANIDGKPSHDIVQDALEALERMEHRGGVGADGKTGDGAGILIQIPHEFFREELA 60
Query: 175 NVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNS 234
G +LP GEYAVGM FLP+ E RE +K + + E+ G VLGWR VP DNS LG +
Sbjct: 61 EAGIELPEAGEYAVGMLFLPRDEEAREAAKAIIEEELEAEGLRVLGWRDVPVDNSVLGPT 120
Query: 235 ALQTEPVVEQVFLT-PSLRSKVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLSS 293
A TEP++EQVF+ PS FE ++Y+LR+ AIR + +DFY+CSLSS
Sbjct: 121 ARATEPLIEQVFVGAPSGDDGEAFERKLYLLRKRIEKAIRAA-------DEDFYVCSLSS 173
Query: 294 RTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGE 353
RT+VYKG L P Q+ +Y DL + RF S AL+HSRFSTNTFPSW AQP R L HNGE
Sbjct: 174 RTIVYKGMLLPEQL-GQFYPDLQDPRFESAFALVHSRFSTNTFPSWPLAQPFRYLAHNGE 232
Query: 354 INTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRS 413
INT+RGN NWM+AREGLLK G +++KKL PI++ SDS + D VLELLVR+GRS
Sbjct: 233 INTIRGNRNWMRAREGLLKSPLFG---EDLKKLKPIINPGGSDSASLDNVLELLVRSGRS 289
Query: 414 LPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGL 473
LPEA+MM+IPEAWQN+ MDP+ +A YEY S+LMEPWDGPA I+FTDGR +GA+LDRNGL
Sbjct: 290 LPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDGRQVGASLDRNGL 349
Query: 474 RPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQY 533
RP R+ IT G +IM+SEVGVVD+PPE V+ KGRL PG MLLVD E+ ++DDE +K Q
Sbjct: 350 RPARYVITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGEMLLVDLEEGRILDDEEIKDQL 409
Query: 534 SLAR 537
+
Sbjct: 410 AKRH 413
>gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and
metabolism].
Length = 485
Score = 692 bits (1788), Expect = 0.0
Identities = 281/498 (56%), Positives = 340/498 (68%), Gaps = 21/498 (4%)
Query: 837 SKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVD 896
S +E +K Y KA G++K+++KMGISTLASY+GAQ+FEA+GLS++V++ F GT +R+
Sbjct: 2 SLEEALKNYIKAIEKGLLKIMSKMGISTLASYRGAQLFEAVGLSADVVDLYFPGTETRIG 61
Query: 897 GATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQ 956
G + + +A + H A + A L G R GGE H DP + LQ
Sbjct: 62 GISLDEIAQEISRRHRTAGAVK--------AKELDVGGFGTERDGGEPHFYDPDTLFALQ 113
Query: 957 EAAR-GNSVAAYKEYSKRIQELNKTCNLRGLLKFK-EADVKIPLEEVEPASEIVKRFCTG 1014
A R YKEYS I LR LL F + IP+EEVEP E+ KRF TG
Sbjct: 114 VATRSEGGYREYKEYSVLIGTRAS-TTLRDLLDFIADGSKPIPIEEVEPVLELKKRFVTG 172
Query: 1015 AMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAIKQVASGR 1074
AMS+G++S EAH LA AMN+IG KSNTGEGGE P R E RSAIKQVASGR
Sbjct: 173 AMSFGALSKEAHEALARAMNRIGTKSNTGEGGEDPERYED--------GRSAIKQVASGR 224
Query: 1075 FGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDI 1134
FGV+ YL NAD ++IK+AQGAKPGEGG+LPG KV +IA TR S GVGLISPPPHHDI
Sbjct: 225 FGVTPEYLANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDI 284
Query: 1135 YSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASR 1194
YSIEDLAQLI DLK ANP A+ISVKLV+E GVG IA+GV K AD + I G DGGTGAS
Sbjct: 285 YSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASP 344
Query: 1195 WTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFST 1254
T I +AG+PWELGLAETHQTLV N LR + L DG L+TG DVA AA LGA+ GF T
Sbjct: 345 LTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGT 404
Query: 1255 APLITLGCIMMRKCHKNTCPVGIATQDPVLREK--FAGEPEHVINFFFMLAEELREIMSQ 1312
A L+ LGCIM R CH TCPVGIATQDP LR++ G+PE VIN+F +AEELRE+++
Sbjct: 405 AALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAA 464
Query: 1313 LGFRTITEMIGRSDMLEV 1330
LG R+++E+IGR+D+L
Sbjct: 465 LGKRSLSELIGRTDLLRT 482
>gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase.
This family represents a region of the glutamate synthase
protein. This region is expressed as a separate subunit
in the glutamate synthase alpha subunit from
archaebacteria, or part of a large multidomain enzyme in
other organisms. The aligned region of these proteins
contains a putative FMN binding site and Fe-S cluster.
Length = 367
Score = 611 bits (1578), Expect = 0.0
Identities = 233/374 (62%), Positives = 268/374 (71%), Gaps = 9/374 (2%)
Query: 945 HLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVKIPLEEVEPA 1004
H N+P I LQ+A + S +Y +Y + + E LR LL+F A+ IP+EEVEPA
Sbjct: 1 HRNEPEVIKTLQKAVQVESYPSYDKYREPLNERVPIGALRDLLEFDYAEDPIPIEEVEPA 60
Query: 1005 SEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKR 1064
EI RFCTGAMSYG++S EAH LA AMN++G KSNTGEGGE P R++ +DG
Sbjct: 61 LEIKTRFCTGAMSYGALSEEAHEALAKAMNRLGTKSNTGEGGEDPERLKYAADG------ 114
Query: 1065 SAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVG 1124
AIKQVASGRFGV+ YL NAD ++IK+AQGAKPGEGG LPG KV +IA R S GVG
Sbjct: 115 -AIKQVASGRFGVTPEYLNNADAIEIKIAQGAKPGEGGHLPGEKVSPEIARIRGSPPGVG 173
Query: 1125 LISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLIS 1184
LISPPPHHDIYSIEDLAQLIYDLK NP A ISVKLVS GVG IA+GV K AD +LI
Sbjct: 174 LISPPPHHDIYSIEDLAQLIYDLKEINPKAPISVKLVSGHGVGTIAAGVAKAGADIILID 233
Query: 1185 GHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244
GHDGGTGAS T IK+AGLPWEL LAE HQTLV N LR R L DG L+TG DVA AA
Sbjct: 234 GHDGGTGASPKTSIKHAGLPWELALAEVHQTLVENGLRDRVSLIADGGLRTGADVAKAAA 293
Query: 1245 LGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLRE--KFAGEPEHVINFFFML 1302
LGA+ TA LI LGCIM R CH NTCPVG+ATQDP LR+ F G PE V+N+F L
Sbjct: 294 LGADAVYIGTAALIALGCIMCRVCHTNTCPVGVATQDPELRKRLDFEGAPERVVNYFRFL 353
Query: 1303 AEELREIMSQLGFR 1316
AEE+RE+++ LGF
Sbjct: 354 AEEVRELLAALGFN 367
>gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain.
GltS is a complex iron-sulfur flavoprotein that catalyzes
the reductive synthesis of L-glutamate from
2-oxoglutarate and L-glutamine via intramolecular
channelling of ammonia, a reaction in the plant, yeast
and bacterial pathway for ammonia assimilation. It is a
multifunctional enzyme that functions through three
distinct active centers, carrying out L-glutamine
hydrolysis, conversion of 2-oxoglutarate into
L-glutamate, and electron uptake from an electron donor.
Length = 392
Score = 514 bits (1326), Expect = e-168
Identities = 194/398 (48%), Positives = 228/398 (57%), Gaps = 27/398 (6%)
Query: 949 PLAIAKLQEAARG--NSVAAYKEYSKRIQELNKT-CNLRGLLKFKEADVKIPLEE----- 1000
L I +L+E N Y Y++ + LR LL+F K PLE
Sbjct: 2 LLEIERLEEIQYFVFNRAERYGVYNRAGNSRGRPFGTLRDLLEFGAQLAKHPLEPDEEVD 61
Query: 1001 --------VEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRM 1052
E ++ F AMS+G++S EA LA G SNTGEGGE P
Sbjct: 62 DRVTIGPNAEKPLKLDSPFNISAMSFGALSKEAKEALAIGAALAGTASNTGEGGELPEER 121
Query: 1053 EPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGD 1112
E IKQVASGRFGV YL AD ++IK+ QGAKPGEGG LPG KV +
Sbjct: 122 EG--------GGDIIKQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGHLPGEKVTEE 173
Query: 1113 IAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASG 1172
IA R GV LISPPPHHDIYSIEDLAQLI DL+ A G I VKLV+ G G IA+G
Sbjct: 174 IAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAG 233
Query: 1173 VVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQ 1232
V AD + I G +GGTGA+ T I + GLP ELGLA HQ LV N LR R L G
Sbjct: 234 VAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGG 293
Query: 1233 LKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLRE--KFAG 1290
L+TG DVA A LGA+ G TA LI LGCI RKCH NTCPVG+ATQDP LR G
Sbjct: 294 LRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEG 353
Query: 1291 EPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDML 1328
+ E V N+ LAEELRE+ + LG R++ E++GRSD+L
Sbjct: 354 KAERVANYLKSLAEELRELAAALGKRSL-ELLGRSDLL 390
Score = 32.1 bits (74), Expect = 2.8
Identities = 27/138 (19%), Positives = 42/138 (30%), Gaps = 41/138 (29%)
Query: 755 SSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVES--AEPREVHHFCTLVGF--GADAI- 809
V + + L + H LVKN R R+ LI +V GADA+
Sbjct: 258 FIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADV-----AKALALGADAVG 312
Query: 810 ---------------------CPY-LATEAIWRLQVDGKIPPKASGEFHSKDELVKKYFK 847
CP +AT+ + E V Y K
Sbjct: 313 IGTAALIALGCIQARKCHTNTCPVGVATQDPEL--RRRLDVEGKA-------ERVANYLK 363
Query: 848 ASNYGMMKVLAKMGISTL 865
+ + ++ A +G +L
Sbjct: 364 SLAEELRELAAALGKRSL 381
>gnl|CDD|223145 COG0067, GltB, Glutamate synthase domain 1 [Amino acid transport
and metabolism].
Length = 371
Score = 497 bits (1281), Expect = e-162
Identities = 194/392 (49%), Positives = 247/392 (63%), Gaps = 21/392 (5%)
Query: 103 LGLYDPKFDKDSCGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162
GLYDP F+ D+CG+G +A G S K + DALE LV + HRGA G + GDGAGIL+
Sbjct: 1 QGLYDPAFEHDACGIGGIAHKDGRPSHKIVEDALEALVNLTHRGAPGADGYAGDGAGILL 60
Query: 163 ALPHDFFKEAAKNVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWR 222
+P FF+E A G +LP G YAVGM FLPQ R ++++ + A + G +VLGWR
Sbjct: 61 QIPDYFFREEADK-GIKLPEAGFYAVGMVFLPQ---ERAAAREIPEEEAVAEGLSVLGWR 116
Query: 223 AVPTDNSGLGNSALQTEPVVEQVFLTPSLRSKVDFENQMYILRRVSMAAIRESLNLEHGG 282
VP ++S LG AL T P +EQVF+ S DFE ++I R+ +E
Sbjct: 117 DVPVNSSVLGEVALATMPRIEQVFIGASGD---DFERVLFIARK----------RIEKRI 163
Query: 283 AKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRA 342
DFY+CSLSSRT+VYKG P + ++Y DL +ER+ S +AL+H+RFSTNTFPSW A
Sbjct: 164 GADFYVCSLSSRTIVYKGVGLPEDVAEFY-LDLDDERYKSAIALVHTRFSTNTFPSWPLA 222
Query: 343 QPMRILGHNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDG 402
P R+L HNGEINT GN NW++AR E + + KLLPI+ SDS + D
Sbjct: 223 HPFRLLVHNGEINTYGGNRNWLEARGYKF---ESPTDGEVLAKLLPILMRGGSDSASLDN 279
Query: 403 VLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGR 462
LELL+ GR L A M++ PEAW +MDP+ +A YE SALMEPWDGPA I FTDG
Sbjct: 280 ALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPADIVFTDGS 339
Query: 463 YLGATLDRNGLRPGRFYITHSGRVIMASEVGV 494
GA LDRNGLRP R++IT G V++ASE GV
Sbjct: 340 EEGAILDRNGLRPARYWITKDGEVVVASEAGV 371
>gnl|CDD|218318 pfam04898, Glu_syn_central, Glutamate synthase central domain. The
central domain of glutamate synthase connects the amino
terminal amidotransferase domain with the FMN-binding
domain and has an alpha / beta overall topology. This
domain appears to be a rudimentary form of the
FMN-binding TIM barrel according to SCOP.
Length = 288
Score = 483 bits (1245), Expect = e-158
Identities = 162/294 (55%), Positives = 212/294 (72%), Gaps = 6/294 (2%)
Query: 588 LLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQV 647
LL KAFGYT E +E+++LPMA+ G EALGSMG+D PLAV+S + +L ++YFKQ+FAQV
Sbjct: 1 LLRRQKAFGYTYEDVELVLLPMAETGKEALGSMGDDTPLAVLSEKPRLLYDYFKQLFAQV 60
Query: 648 TNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGW 707
TNPPIDPIRE+IV S+E +GPEG L E T EQ RL L P+LS E+EA+K +N G+
Sbjct: 61 TNPPIDPIREEIVMSLETYLGPEGNLLEPTPEQARRLKLDSPILSNSELEALKNLNEEGF 120
Query: 708 RSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767
++ +DIT+ D G GLE LDR+C EA +A++ G T++VLSDR +RVA+ +LLAV
Sbjct: 121 KAATIDITFDVDEGVDGLEAALDRLCEEAEEAVRSGATIIVLSDRNLDEERVAIPALLAV 180
Query: 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKI 827
GAVHHHL++ RT++ L+VE+ E REVHHF L+G+GA AI PYLA E I L G +
Sbjct: 181 GAVHHHLIRKGLRTKVSLVVETGEAREVHHFAVLIGYGASAINPYLAYETIRDLHRRGLL 240
Query: 828 PPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSS 881
S +E VK Y KA G++K+++KMGISTL SY+GAQIFEA+GLS
Sbjct: 241 KEL------SLEEAVKNYRKAIEKGLLKIMSKMGISTLQSYRGAQIFEAVGLSR 288
>gnl|CDD|238482 cd00982, gltB_C, gltb_C. This domain is found at the C-terminus of
the large subunit (gltB) of glutamate synthase (GltS).
GltS encodes a complex iron-sulfur flavoprotein that
catalyzes the synthesis of L-glutamate from L-glutamine
and 2-oxoglutarate. It requires the transfer of ammonia
and electrons among three distinct active centers that
carry out L-Gln hydrolysis, conversion of 2-oxoglutarate
into L-Glu, and electron uptake from a donor. These
catalytic sites appear to occur in other domains within
the protein, and not the domain in this CD. This
particular domain has no known function, but it likely
has a structural role as it interacts with the
amidotransferase and FMN-binding domains of gltS.
Length = 251
Score = 445 bits (1146), Expect = e-144
Identities = 164/251 (65%), Positives = 194/251 (77%), Gaps = 1/251 (0%)
Query: 1376 LDQKLIKLSK-AALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLT 1434
LD KLI ++ A +E PV +E P+ N +RAVGTMLS E+ KRY GLP DTI IK
Sbjct: 1 LDDKLIADAEPALIENGEPVTLEYPIRNTDRAVGTMLSGEIAKRYGEEGLPEDTIKIKFE 60
Query: 1435 GSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALY 1494
GSAGQS GAFL G+ LELEGD+NDYVGKGLSGG+IV PPK + F P+ NI+IGNV LY
Sbjct: 61 GSAGQSFGAFLAKGVTLELEGDANDYVGKGLSGGRIVVRPPKDATFKPEENIIIGNVCLY 120
Query: 1495 GATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSG 1554
GATSGEA+ G A ERF VRNSGA AVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSG
Sbjct: 121 GATSGEAFIRGRAGERFAVRNSGATAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSG 180
Query: 1555 GIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADFEN 1614
G+AYVLD DG F + N E+VDL+++E+ ED L+ +I++H YT S+ AKE+LA++E
Sbjct: 181 GVAYVLDEDGDFEKKVNHEMVDLERLEDAEDEEQLKELIEEHVEYTGSEKAKEILANWEA 240
Query: 1615 LLPKFIKVFPR 1625
L KF+KV PR
Sbjct: 241 YLKKFVKVIPR 251
>gnl|CDD|223148 COG0070, GltB, Glutamate synthase domain 3 [Amino acid transport and
metabolism].
Length = 301
Score = 375 bits (965), Expect = e-118
Identities = 157/308 (50%), Positives = 195/308 (63%), Gaps = 9/308 (2%)
Query: 1342 ENIDLSLLLRPAADLRPEAAQYCVQKQDHGLDMALDQKLIKLSKAALEKALPVYIETPVC 1401
+ +DLS LL P + YC ++QDHGL+ LD KL+ K ALE V I +
Sbjct: 2 KGLDLSPLLYP-----EDPNTYCEKRQDHGLEPVLDAKLL-EDKPALENGEIVKILAEIR 55
Query: 1402 NVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYV 1461
NV+R+VG LS E+ K Y L GLP DT+ I GSAGQS GAF G LEL GD+NDYV
Sbjct: 56 NVDRSVGANLSGEIAKGYGLQGLPEDTVEINFNGSAGQSFGAFNAKGPTLELNGDANDYV 115
Query: 1462 GKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAV 1521
GKG+SGGKIV P + F + NI++GN LYGAT GE + G A ERF VRNSGA AV
Sbjct: 116 GKGMSGGKIVVRGP--ARFKAEANIIVGNTVLYGATGGELFIRGNAGERFGVRNSGATAV 173
Query: 1522 VEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGK-FRSRCNPELVDLDKV 1580
VEG+GDHGCEYMTGG VVVLG TGRNF AGMSGG+AYV G F N ELV+L+ +
Sbjct: 174 VEGIGDHGCEYMTGGRVVVLGDTGRNFGAGMSGGVAYVRGEVGSDFPLGVNAELVELESL 233
Query: 1581 EEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKVAAAQ 1640
EE++ L+ +I++H YT S+ AKE+L ++E KF+KV PR+Y+ L A A
Sbjct: 234 TEEDEEEKLKELIEEHVEYTGSEKAKEILENWELYEEKFVKVKPREYRPFLLLNADAEAA 293
Query: 1641 EAAEDAVK 1648
+
Sbjct: 294 GEDFTEAQ 301
>gnl|CDD|201826 pfam01493, GXGXG, GXGXG motif. This domain is found in glutamate
synthase, tungsten formylmethanofuran dehydrogenase
subunit c (FwdC) and molybdenum formylmethanofuran
dehydrogenase subunit c (FmdC). A repeated G-XX-G-XXX-G
motif is seen in the alignment.
Length = 198
Score = 258 bits (662), Expect = 6e-79
Identities = 96/199 (48%), Positives = 122/199 (61%), Gaps = 3/199 (1%)
Query: 1396 IETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEG 1455
+ + N +R VGT LS ++TK+Y GL DT I GSAGQS GAF+ G+ LE+EG
Sbjct: 1 KDEAIINTDRLVGTDLSGKITKKYGEEGLK-DTGEIVFNGSAGQSFGAFMKGGVTLEVEG 59
Query: 1456 DSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRN 1515
D+NDYVGKG+SGG+IV G + N + GN LYGAT G + G A ERF VRN
Sbjct: 60 DANDYVGKGMSGGEIVIKGNAGDAGEYVGNGIAGNTVLYGATGGTIFIEGDAGERFGVRN 119
Query: 1516 SGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGK-FRSRCNPE 1573
SG V+EG GDHG EYMTGG +VVLG GRN AGM+GG YVL N E
Sbjct: 120 SGGEIVIEGNAGDHGGEYMTGGRIVVLGDAGRNVGAGMTGGTIYVLGEIEDGLPGFVNLE 179
Query: 1574 LVDLDKVEEEEDIITLRMM 1592
+V+ +++E+ E L+ +
Sbjct: 180 IVEEERIEDPEGEKQLKEL 198
>gnl|CDD|238281 cd00504, GXGXG, GXGXG domain. This domain of unknown function is
found at the C-terminus of the large subunit (gltB) of
glutamate synthase (GltS), in subunit C of tungsten
formylmethanofuran dehydrogenase (FwdC) and in subunit C
of molybdenum formylmethanofuran dehydrogenase (FmdC). It
is also found in a primarily archeal group of proteins
predicted to encode part of the large subunit of GltS. It
is characterized by a repeated GXXGXXXG motif. GltS is a
complex iron-sulfur flavoprotein that catalyzes the
synthesis of L-glutamate from L-glutamine and
2-oxoglutarate. It requires the transfer of ammonia and
electrons among three distinct active centers that carry
out L-Gln hydrolysis, conversion of 2-oxoglutarate into
L-Glu, and electron uptake from a donor. These catalytic
sites occur in other domains within the protein or or
encoded by separate genes, and are not present in the
domain in this CD. FwdC and FmdC are reversible ion pumps
that catalyze the formylation and deformylation of
methanofuran in hyperthermophiles and bacteria. They
require the presence of either tungstun (FwdC) or
molybdenum (FmdC). The specific function of this domain
also remains unidentified in the formylmethanofuran
dehydrogenases.
Length = 149
Score = 227 bits (581), Expect = 7e-69
Identities = 92/158 (58%), Positives = 107/158 (67%), Gaps = 10/158 (6%)
Query: 1405 RAVGTMLSHEVTKRYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKG 1464
RAVGT S + KR GLP DT+ I + GSAGQS GAF G + +EG++NDYVGKG
Sbjct: 1 RAVGTRGSRYIGKRP---GLPEDTVEIIINGSAGQSFGAF-MAGGTITVEGNANDYVGKG 56
Query: 1465 LSGGKIVAYPPKGSLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEG 1524
+SGG+IV +PP G N + GNVALYGAT G+ + G A ERF VR SG VVEG
Sbjct: 57 MSGGEIVIHPPAGDE-----NGIAGNVALYGATGGKIFVRGNAGERFGVRMSGGTIVVEG 111
Query: 1525 VGD-HGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLD 1561
VGD G EYMTGGT+VVLG GRNF AGMSGG+ YV
Sbjct: 112 VGDDFGGEYMTGGTIVVLGDAGRNFGAGMSGGVIYVRG 149
>gnl|CDD|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II.
Length = 223
Score = 216 bits (553), Expect = 5e-64
Identities = 94/184 (51%), Positives = 114/184 (61%), Gaps = 40/184 (21%)
Query: 313 ADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR----ILGHNGEINTLRGNVNWMKARE 368
L +ERF S +A++H+RFSTN FPSW+ A P R +L HNGEINTLRG NWM+ARE
Sbjct: 76 FYLQDERFKSALAIVHTRFSTNGFPSWENAHPFRREGWVLAHNGEINTLRGLRNWMRARE 135
Query: 369 GLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPEAWQN 428
G+ S SDS AFD +LELLVRAGRS
Sbjct: 136 GVFN--------------------SGSDSEAFDNLLELLVRAGRS--------------- 160
Query: 429 DKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRPGRFYITHSGRVIM 488
+MDP+ +A YEY + LMEPWDGPA + FTDGRY+GATLDRNGLRP R+ IT G +++
Sbjct: 161 -PDMDPEERAFYEYLAGLMEPWDGPAALVFTDGRYVGATLDRNGLRPARYGITEDGLIVV 219
Query: 489 ASEV 492
ASE
Sbjct: 220 ASEA 223
Score = 78.2 bits (193), Expect = 9e-16
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 115 CGV-GFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAA 173
CG+ GF+A + G++S + DALE L R+ HRG G + N DGAGIL +P F +
Sbjct: 1 CGILGFIAHIKGKASHDVVEDALEALERLEHRGGVGADGN--DGAGILTQIPDGFGAPSE 58
Query: 174 KNVGFQLPPPGEYAVGMFFLPQSEN 198
+ + F + GE ++ F Q E
Sbjct: 59 RRL-FVIRKRGEKSIVAEFYLQDER 82
>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase).
The glutaminase domain catalyzes an amide nitrogen
transfer from glutamine to the appropriate substrate. In
this process, glutamine is hydrolyzed to glutamic acid
and ammonia. This domain is related to members of the
Ntn (N-terminal nucleophile) hydrolase superfamily and
is found at the N-terminus of enzymes such as
glucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). GLMS catalyzes the formation of
glucosamine 6-phosphate from fructose 6-phosphate and
glutamine in amino sugar synthesis. GPATase catalyzes
the first step in purine biosynthesis, an amide transfer
from glutamine to PRPP, resulting in
phosphoribosylamine, pyrophosphate and glutamate.
Asparagine synthetase B synthesizes asparagine from
aspartate and glutamine. Beta-LS catalyzes the formation
of the beta-lactam ring in the beta-lactamase inhibitor
clavulanic acid. GltS synthesizes L-glutamate from
2-oxoglutarate and L-glutamine. These enzymes are
generally dimers, but GPATase also exists as a
homotetramer.
Length = 220
Score = 121 bits (306), Expect = 7e-31
Identities = 61/212 (28%), Positives = 75/212 (35%), Gaps = 56/212 (26%)
Query: 311 YYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMR------ILGHNGEINTLRGNVNWM 364
DL +E S +AL H R +TN PS AQP R L HNGEI R +
Sbjct: 57 VALDLLDEPLKSGVALGHVRLATNGLPSEANAQPFRSEDGRIALVHNGEIYNYRELREEL 116
Query: 365 KAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRSLPEAVMMMIPE 424
+AR SDS +LE L R G L EAV +
Sbjct: 117 EAR--------------------GYRFEGESDSEVILHLLERLGREGG-LFEAVEDALKR 155
Query: 425 AWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDG--RYLGATLDRNGLRPGRFYITH 482
DGP + DG L A DR G+RP + IT
Sbjct: 156 -------------------------LDGPFAFALWDGKPDRLFAARDRFGIRPLYYGITK 190
Query: 483 SGRVIMASEVGVVDIPPEDVLRKGRLNPGMML 514
G ++ ASE + P RL PG +L
Sbjct: 191 DGGLVFASEPKALLALPFK--GVRRLPPGELL 220
Score = 39.7 bits (93), Expect = 0.007
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAK 174
CG+ + G +S + L L + HRG DGAGI V F E
Sbjct: 1 CGIFGIVGADGAASLL-LLLLLRGLAALEHRG--------PDGAGIAVYDGDGLFVEKRA 51
Query: 175 NVGFQL 180
+
Sbjct: 52 GPVSDV 57
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 71.7 bits (177), Expect = 1e-12
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 1702 RGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVC 1756
GF+ Y+R + R R+ D+KE E K Q+ARCMDCG PFCH C
Sbjct: 5 TGFLEYDRVDPKKRPVAERIKDFKEFYEPF-SEEQAKIQAARCMDCGIPFCHWGC 58
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or
homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase small
subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 71.8 bits (176), Expect = 1e-12
Identities = 27/54 (50%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1700 KHRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCH 1753
K GF+ Y+R RDP R+ DWKE K Q+ARCMDCGTPFCH
Sbjct: 1 KPTGFLEYKRRKPTERDPRTRLKDWKEFTNPF-DKESAKYQAARCMDCGTPFCH 53
>gnl|CDD|238888 cd01907, GlxB, Glutamine amidotransferases class-II
(Gn-AT)_GlxB-type. GlxB is a glutamine
amidotransferase-like protein of unknown function found
in bacteria and archaea. GlxB has a structural fold
similar to that of other class II glutamine
amidotransferases including glucosamine-fructose
6-phosphate synthase (GLMS or GFAT), glutamine
phosphoribosylpyrophosphate (Prpp) amidotransferase
(GPATase), asparagine synthetase B (AsnB), beta lactam
synthetase (beta-LS) and glutamate synthase (GltS).
The GlxB fold is also somewhat similar to the Ntn
(N-terminal nucleophile) hydrolase fold of the
proteasomal alpha and beta subunits.
Length = 249
Score = 59.6 bits (145), Expect = 2e-09
Identities = 60/239 (25%), Positives = 89/239 (37%), Gaps = 40/239 (16%)
Query: 282 GAKDFYICSLSSRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDR 341
G D ++ S V+KG P + Y DL E + Y + H+R TN+ W
Sbjct: 41 GDPDAFVYSSGKDMEVFKGVGYPEDIARRY--DL--EEYKGYHWIAHTRQPTNSAVWWYG 96
Query: 342 AQPMRILG----HNGEINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDS 397
A P I HNGEI+ N +++ R G K + + +D+
Sbjct: 97 AHPFSIGDIAVVHNGEISNYGSNREYLE-RFG-YKFE------------------TETDT 136
Query: 398 GAFDGVLELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKAL-YEYFSALMEPWDGP-AL 455
L+LL+R G E +I + + AL Y A + DGP +
Sbjct: 137 EVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERE----LLLALRLTYRLADL---DGPFTI 189
Query: 456 ISFTDGRYLGATLDRNGLRPGRFYITHSGRVIMASEV-GVVDIPPEDVLRKGRLNPGMM 513
I T ++ DR LRP V +ASE + +IP D + PG
Sbjct: 190 IVGTPDGFIVIR-DRIKLRPAVVA-ETDDYVAIASEECAIREIPDRDNAKVWEPRPGEY 246
>gnl|CDD|238481 cd00981, arch_gltB, Archaeal-type gltB domain. This domain shares
sequence similarity with a region of unknown function
found in the large subunit of glutamate synthase, which
is encoded by gltB and found in most bacteria and
eukaryotes. It is predicted to be homologous to the
C-terminal domain of glutamate synthase based upon
sequence similarity coupled with genome organization
data, showing that this domain is found in a gene cluster
with other domains of Glts, which are annotated. This
domain is found primarily in archaea, but is also present
in a few bacteria, likely as a result of lateral gene
transfer.
Length = 232
Score = 52.7 bits (127), Expect = 4e-07
Identities = 60/216 (27%), Positives = 93/216 (43%), Gaps = 36/216 (16%)
Query: 1418 RYHLVGLPADTIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKG 1477
RY GLP + I + G G +GAF+ G + + G++ D VG ++ GKIV + G
Sbjct: 37 RYIGDGLPGNV-RINIYGVPGNDLGAFM-SGPTIIVYGNAQDDVGNTMNDGKIVIH---G 91
Query: 1478 SLFDPKVNIVIGNVALYGATSGEAYFNGMAAERFCV-----RNSGARAVVEG-VGDHGCE 1531
S G+V Y G+ + G A R + ++ V+ G GD E
Sbjct: 92 S---------AGDVLGYAMRGGKIFIRGNAGYRVGIHMKEYKDKVPVLVIGGTAGDFLGE 142
Query: 1532 YMTGGTVVVLGK------TGRNFAAGMSGGIAYVLDVDGKFRSRCNPEL--VDLDKVE-E 1582
YM GG ++VLG GR GM GG+ Y+ R + ++ K E
Sbjct: 143 YMAGGVIIVLGLGTDEEPVGRYIGTGMHGGVIYI-------RGKVERSKLGKEVPKFELT 195
Query: 1583 EEDIITLRMMIQQHQRYTNSQLAKEVLADFENLLPK 1618
EED+ + I++ + A+ + +F L PK
Sbjct: 196 EEDLEFIEKYIEEFCKEFGYDKAEILDEEFTKLKPK 231
>gnl|CDD|238480 cd00980, FwdC/FmdC, FwdC/FmdC. This domain of unknown function is
found in the subunit C of formylmethanofuran
dehydrogenase, an enzyme that catalyzes the first step in
methane formation from CO2 in methanogenic archaea,
hyperthermophiles and bacteria. There are two isoenzymes,
a tungsten-containing isoenzyme (Fwd) and a
molybdenum-containing isoenzyme (Fmd). The subunits C of
both isoenzymes (FwdC/FmdC) are characterized by a
repeated GXXGXXXG motif.
Length = 203
Score = 47.7 bits (114), Expect = 1e-05
Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 27/138 (19%)
Query: 1430 HIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIG 1489
I + G G VGA + G L +EG++ + G + GG+I + G
Sbjct: 41 EIVVEGDVGMYVGAGMKGG-KLVVEGNAGSWAGCEMKGGEI---------------TIKG 84
Query: 1490 NVALY----------GATSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTV 1538
N Y G + G G A +R R +++G G M GGT+
Sbjct: 85 NAGDYVGSAYRGDWRGMSGGTITIEGNAGDRLGERMRRGEILIKGDAGIFAGIRMNGGTI 144
Query: 1539 VVLGKTGRNFAAGMSGGI 1556
+V G G + M G
Sbjct: 145 IVRGDAGAHPGYEMKRGT 162
Score = 43.5 bits (103), Expect = 4e-04
Identities = 30/119 (25%), Positives = 40/119 (33%), Gaps = 43/119 (36%)
Query: 1451 LELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALY---GATSGEAYFNGMA 1507
+ +EGD YVG G+ GGK+V V GN + GE G A
Sbjct: 42 IVVEGDVGMYVGAGMKGGKLV---------------VEGNAGSWAGCEMKGGEITIKGNA 86
Query: 1508 AERFCVRNSGARAVVEGVGDH-GCEY------MTGGTVVVLGKTGRNFAAGMSGGIAYV 1559
GD+ G Y M+GGT+ + G G M G +
Sbjct: 87 ------------------GDYVGSAYRGDWRGMSGGTITIEGNAGDRLGERMRRGEILI 127
Score = 39.6 bits (93), Expect = 0.006
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 27/127 (21%)
Query: 1431 IKLTGSAGQSVGAFLCPGILLELEGDSNDYVG-------KGLSGGKIVAYPPKGSLFDPK 1483
+ + G+AG G + G + ++G++ DYVG +G+SGG I
Sbjct: 61 LVVEGNAGSWAGCEMKGGEI-TIKGNAGDYVGSAYRGDWRGMSGGTI------------- 106
Query: 1484 VNIVIGNVALY---GATSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVV 1539
+ GN GE G A +R +G +V G G H M GT+V
Sbjct: 107 --TIEGNAGDRLGERMRRGEILIKGDAGIFAGIRMNGGTIIVRGDAGAHPGYEMKRGTIV 164
Query: 1540 VLGKTGR 1546
+ G+
Sbjct: 165 IGGEIEE 171
>gnl|CDD|132166 TIGR03122, one_C_dehyd_C, formylmethanofuran dehydrogenase subunit C.
Members of this largely archaeal protein family are
subunit C of the formylmethanofuran dehydrogenase.
Nomenclature in some bacteria may reflect inclusion of
the formyltransferase described by TIGR03119 as part of
the complex, and therefore call this protein
formyltransferase/hydrolase complex Fhc subunit C. Note
that this model does not distinguish tungsten (FwdC) from
molybdenum-containing (FmdC) forms of this enzyme.
Length = 260
Score = 46.2 bits (110), Expect = 7e-05
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 1451 LELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVN----IVIGNVALY----------GA 1496
+ +EGD +VG + GGKIV S ++ V GN Y G
Sbjct: 83 IVVEGDVGMHVGAEMKGGKIVVNGNADSWLGCEMKGGEIEVKGNAGDYVGSAYRGEWRGM 142
Query: 1497 TSGEAYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGG 1555
+ G+ G A + R G ++EG G +M GGT+++ G GR M G
Sbjct: 143 SGGKIIVEGNAGDYLGERMRGGEILIEGNAGIFAGIHMNGGTIIIDGDVGRRPGGEMKRG 202
Score = 36.2 bits (84), Expect = 0.11
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 28/120 (23%)
Query: 1449 ILLELEGDSN--DYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALY---GATSGEAYF 1503
L ++GD++ +G+ +S G+I +V G+V ++ G+
Sbjct: 60 TRLVIDGDTSRVKRIGERMSAGEI---------------VVEGDVGMHVGAEMKGGKIVV 104
Query: 1504 NGMAAERFCVRNSGARAVVEG-VGDH-GCEY------MTGGTVVVLGKTGRNFAAGMSGG 1555
NG A G V+G GD+ G Y M+GG ++V G G M GG
Sbjct: 105 NGNADSWLGCEMKGGEIEVKGNAGDYVGSAYRGEWRGMSGGKIIVEGNAGDYLGERMRGG 164
>gnl|CDD|225128 COG2218, FwdC, Formylmethanofuran dehydrogenase subunit C [Energy
production and conversion].
Length = 264
Score = 43.9 bits (104), Expect = 3e-04
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 1451 LELEGDSNDYVGKGLSGGKIV----AYPPKGSLFDPKVNIVIGNVALYGATSGEAY---F 1503
+ +EGD +VG G+ GGKIV A G + GN Y G AY +
Sbjct: 88 IIVEGDVGMHVGAGMKGGKIVVNGNADSWAGIEMKGGEIKIFGNAGDY---VGCAYRGEW 144
Query: 1504 NGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGI 1556
GM SG + +VEG G+ E M GG ++V G G+ M+GG
Sbjct: 145 RGM---------SGGKIIVEGNAGNSIGELMRGGEIIVKGDAGKFTGIHMNGGT 189
Score = 37.7 bits (88), Expect = 0.040
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 1482 PKVNIVIGNVALYGATSGEAYFNGM-AAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVV 1540
+++ GN+ E NG + + G + V+ +G E M+ G ++V
Sbjct: 35 KALSVYFGNLVEPLGDFFEVEGNGGDSGADTKISIDGDVSRVKRIG----ERMSAGEIIV 90
Query: 1541 LGKTGRNFAAGMSGGIAYV 1559
G G + AGM GG V
Sbjct: 91 EGDVGMHVGAGMKGGKIVV 109
Score = 36.2 bits (84), Expect = 0.11
Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 28/126 (22%)
Query: 1451 LELEGDSNDYVG-------KGLSGGKIVAYPPKGSLFDPKVNIVIGNVALY---GATSGE 1500
+++ G++ DYVG +G+SGGKI IV GN GE
Sbjct: 126 IKIFGNAGDYVGCAYRGEWRGMSGGKI---------------IVEGNAGNSIGELMRGGE 170
Query: 1501 AYFNGMAAERFCVRNSGARAVVEG-VGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYV 1559
G A + + +G ++EG GD M GGT+VV GK G G+
Sbjct: 171 IIVKGDAGKFTGIHMNGGTIIIEGDAGDFVGGEMKGGTIVVDGKAGEFLPGFKREGVEE- 229
Query: 1560 LDVDGK 1565
GK
Sbjct: 230 -ARGGK 234
Score = 33.9 bits (78), Expect = 0.54
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 28/131 (21%)
Query: 1449 ILLELEGDSN--DYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALY---GATSGEAYF 1503
+ ++GD + +G+ +S G+I IV G+V ++ G G+
Sbjct: 65 TKISIDGDVSRVKRIGERMSAGEI---------------IVEGDVGMHVGAGMKGGKIVV 109
Query: 1504 NGMAAERFCVRNSGARAVVEG-VGDH-GCEY------MTGGTVVVLGKTGRNFAAGMSGG 1555
NG A + G + G GD+ GC Y M+GG ++V G G + M GG
Sbjct: 110 NGNADSWAGIEMKGGEIKIFGNAGDYVGCAYRGEWRGMSGGKIIVEGNAGNSIGELMRGG 169
Query: 1556 IAYVLDVDGKF 1566
V GKF
Sbjct: 170 EIIVKGDAGKF 180
>gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a
structurally conserved phosphate binding motif and in
general share an eight beta/alpha closed barrel
structure. Specific for this family is the conserved
phosphate binding site at the edges of strands 7 and 8.
The phosphate comes either from the substrate, as in the
case of inosine monophosphate dehydrogenase (IMPDH), or
from ribulose-5-phosphate 3-epimerase (RPE) or from
cofactors, like FMN.
Length = 200
Score = 39.9 bits (93), Expect = 0.005
Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 15/125 (12%)
Query: 1130 PHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGG 1189
Y + +LI +L+ A P ++ VKL + A+ + D V + GG
Sbjct: 91 HGAVGYLAREDLELIRELREAVPDVKVVVKLS--PTGELAAAAAEEAGVDEVGLGNGGGG 148
Query: 1190 TGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEE 1249
G + L+ + + G + D A A LGA+
Sbjct: 149 GGGRD-------------AVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADG 195
Query: 1250 FGFST 1254
+
Sbjct: 196 VIVGS 200
>gnl|CDD|233750 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase, type
2. Isopentenyl-diphosphate delta-isomerase (IPP
isomerase) interconverts isopentenyl diphosphate and
dimethylallyl diphosphate. This model represents the type
2 enzyme. FMN, NADPH, and Mg2+ are required by this form,
which lacks homology to the type 1 enzyme (TIGR02150).
IPP is precursor to many compounds, including enzyme
cofactors, sterols, and isoprenoids [Biosynthesis of
cofactors, prosthetic groups, and carriers, Other].
Length = 333
Score = 39.9 bits (94), Expect = 0.010
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 39/144 (27%)
Query: 1188 GGTGASRWTGIKN--------AGLPWELGLAETHQTL--VANDLRGRTILQTDGQLKTGR 1237
G G + W ++N A + G+ T +L V +D I+ + G L+TG
Sbjct: 210 AGAGGTSWAQVENYRAKGSNLASFFNDWGIP-TAASLLEVRSDAPDAPIIASGG-LRTGL 267
Query: 1238 DVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVIN 1297
DVA A LGA+ G + P L+ E VI
Sbjct: 268 DVAKAIALGADAVGMAR---------------------------PFLKAALDEGEEAVIE 300
Query: 1298 FFFMLAEELREIMSQLGFRTITEM 1321
++ EEL+ M G +TI E+
Sbjct: 301 EIELIIEELKVAMFLTGAKTIAEL 324
>gnl|CDD|223112 COG0034, PurF, Glutamine phosphoribosylpyrophosphate
amidotransferase [Nucleotide transport and metabolism].
Length = 470
Score = 39.1 bits (92), Expect = 0.018
Identities = 44/220 (20%), Positives = 78/220 (35%), Gaps = 66/220 (30%)
Query: 317 NERFTSYMALIHSRFSTNTFPSWDRAQPMRI--------LGHNGEINTLRGNVNWMKARE 368
+ + + H R+ST S + AQP + L HNG + VN + R
Sbjct: 66 LRKLQGNVGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNL------VNAEELRR 119
Query: 369 GLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRA-GRSLPEAVMMMIPEAWQ 427
L +E G + ++SDS E+L+ R L
Sbjct: 120 EL---EEEG-----------AIFNTTSDS-------EVLLHLLAREL------------- 145
Query: 428 NDKNMDPQRKALYEYFSALMEPWDGP-ALISFTDGRYLGATLDRNGLRP---GRFYITHS 483
++E ++ G AL++ + D NG+RP G+
Sbjct: 146 -------DEDDIFEAVKEVLRRVKGAYALVALIKDGLIAV-RDPNGIRPLVLGKL---GD 194
Query: 484 GRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIV 523
G ++ASE +DI + +R + PG +++ + +
Sbjct: 195 GFYVVASETCALDILGAEFVRD--VEPGEAVIITIDGDGL 232
>gnl|CDD|236113 PRK07847, PRK07847, amidophosphoribosyltransferase; Provisional.
Length = 510
Score = 39.2 bits (92), Expect = 0.021
Identities = 53/212 (25%), Positives = 83/212 (39%), Gaps = 69/212 (32%)
Query: 323 YMALIHSRFSTNTFPSWDRAQPM-RI--------LGHNGE-INTLRGNVNWMKAREGLLK 372
++A+ H R+ST +W+ AQP R LGHNG +NT E +
Sbjct: 89 HVAIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNT----------AELAAR 138
Query: 373 CKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGR----SLPEAVMMMIPEAWQN 428
++ GL + +++D+ D V LL A +L +A + ++P
Sbjct: 139 ARDRGLIRGRDP------AGATTDT---DLVTALL--AHGAADSTLEQAALELLPTV--- 184
Query: 429 DKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNGLRP---GRFYITHSGR 485
R A F + F D L A D G+RP GR G
Sbjct: 185 -------RGA----FC-----------LVFMDEHTLYAARDPQGVRPLVLGRL---ERGW 219
Query: 486 VIMASEVGVVDIPPEDVLRKGRLNPGMMLLVD 517
V+ ASE +DI +R+ + PG ++ +D
Sbjct: 220 VV-ASETAALDIVGASFVRE--IEPGELIAID 248
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 38.8 bits (91), Expect = 0.025
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 1720 RMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVC 1756
R D++E + S P ++ARC+DCG C C
Sbjct: 2 RPKDFREAVVGSGPE-AAIYEAARCLDCG-DPCITGC 36
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 37.5 bits (88), Expect = 0.074
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 1702 RGFIAYEREGVQYRDPNIRMNDWKEVMEESKPG---PLLKTQSARCMDCGTPFCHQVC 1756
F+ R + +D R ++ EV PG +++RC+ C C + C
Sbjct: 1 LKFLTTPRIPMPRQDAEERAQNFDEV----APGYTPEEAIEEASRCLQCKDAPCVKAC 54
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large subunit.
This model describes both glutatate synthase small
subunit and closely related paralogs of unknown function
from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 36.3 bits (84), Expect = 0.14
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 1704 FIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVC 1756
FI R+ R ++E+ PG + Q+ RC+ CG P+C C
Sbjct: 3 FIDLPRQDPDKIPVEERKTHFREIYCPFDPGQA-QYQADRCLYCGNPYCEWKC 54
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 32.6 bits (75), Expect = 0.79
Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 29/145 (20%)
Query: 1599 YTNSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMKVAAAQEAAEDAVKDAEEPDEADF 1658
S K E + + L ++ Q+ E KDA EA
Sbjct: 10 LQESPAGKAAQKQLEKEF--------KKRQAELEKLE-KELQKLKEKLQKDAATLSEAAR 60
Query: 1659 KEK--------DAFEELKKMAIASLNEKSNQEAEQVEPTKRPSRVADAVKH----RGF-I 1705
++K F+ ++ L ++ +E +++ ++ A+K +G+ +
Sbjct: 61 EKKEKELQKKVQEFQRKQQKLQQDLQKRQQEELQKIL-----DKINKAIKEVAKKKGYDL 115
Query: 1706 AYEREGVQYRDPNIRMNDWKEVMEE 1730
+R V Y DP+I + D EV++
Sbjct: 116 VLDRNAVLYADPSIDITD--EVLKA 138
>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1
mutation causes misplacement of the septum during cell
division, resulting in the formation of small, circular,
anucleate mini-cells. Inactivation of divIVA produces a
mini-cell phenotype, whereas overproduction of DivIVA
results in a filamentation phenotype. These proteins
appear to contain coiled-coils.
Length = 131
Score = 32.2 bits (74), Expect = 0.80
Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 16/111 (14%)
Query: 1589 LRMMIQQHQRYT--NSQLAKEVLADFENLLPKFIKVFPRDYKRVLASMK--VAAAQEAAE 1644
L +I+ ++ N +L +E+ E L +YK + +++ + AQE AE
Sbjct: 27 LDQVIKDYEALYKENEELKEEIERLEEKL---------EEYKELEETLQKTLVVAQETAE 77
Query: 1645 DAVKDAEEPDEADFKEKDAFEELKKMAIASLNEKSNQEAEQVEPTKRPSRV 1695
+ +A++ EA+ K+A + +++ + NE++ + A + + KR SR+
Sbjct: 78 EVKANAQK--EAELIIKEAEAKAERI-VNDANEEAKKLATEYDELKRQSRL 125
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 33.6 bits (76), Expect = 1.2
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1626 DYKRVLASMKVAAAQEAAEDAVKDAEEPDEADFKEKDAFEELKKMAIASLNEKSNQEAEQ 1685
D K+ K AAA++ A++A K AEE +AD +K A EE KK A + ++AE+
Sbjct: 1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKA-EEAKKADEAKKKAEEAKKAEE 1461
Query: 1686 VEPTKRPSRVADAVKHR 1702
+ ++ AD K +
Sbjct: 1462 AKKKAEEAKKADEAKKK 1478
Score = 33.6 bits (76), Expect = 1.4
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 1628 KRVLASMKVAAAQEAAEDAVKDAEEPDEADFKEKDAFEELKKMAIASLNEKSNQEAEQVE 1687
K A K A++ A+ A K AEE +AD +K A E+ KK + ++A++ +
Sbjct: 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAK 1424
Query: 1688 PTKRPSRVADAVKHR 1702
+ AD K +
Sbjct: 1425 KKAEEKKKADEAKKK 1439
>gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and
related proteins) [Coenzyme transport and metabolism].
Length = 360
Score = 32.6 bits (75), Expect = 1.6
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 31/151 (20%)
Query: 1173 VVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTL--VANDLRGRTILQTD 1230
V+KG +G GGTGA + G + G++ T +L + + R + D
Sbjct: 222 VLKGILAPEDAAGA-GGTGADGIEVSNHGGRQLDWGIS-TADSLPEIVEAVGDRIEVIAD 279
Query: 1231 GQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAG 1290
G +++G DVA A LGA VGI P L AG
Sbjct: 280 GGIRSGLDVAKALALGA-------------------DA------VGIGR--PFLYGLAAG 312
Query: 1291 EPEHVINFFFMLAEELREIMSQLGFRTITEM 1321
V ++ +EL+ M+ G + I E+
Sbjct: 313 GEAGVERVLEIIRKELKIAMALTGAKNIEEL 343
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 32.5 bits (74), Expect = 2.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 1212 THQTLVANDLRGRTILQTDGQLKTGRDVAIAAL 1244
TH+ LVAN + L G+L+ G +V I AL
Sbjct: 229 THRNLVANMQQAHQWLAGTGKLEEGCEVVITAL 261
>gnl|CDD|184958 PRK14996, PRK14996, TetR family transcriptional regulator;
Provisional.
Length = 192
Score = 31.6 bits (72), Expect = 2.5
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 28/101 (27%)
Query: 734 AEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAVGAVHHH--------------LVKNLE 779
A R A+ EG+ A + +R+A + +A G VHHH L++ L
Sbjct: 16 AAMRVALAEGFA-------AMTVRRIASEAQVAAGQVHHHFSSAGELKALAFIHLIRQL- 67
Query: 780 RTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWR 820
+ ++A RE H ++G PY+ +WR
Sbjct: 68 -LDAEQVPQTASWRERLH--AMLGSEDGRFEPYI---RLWR 102
>gnl|CDD|130387 TIGR01320, mal_quin_oxido, malate:quinone-oxidoreductase. This
membrane-associated enzyme is an alternative to the
better-known NAD-dependent malate dehydrogenase as part
of the TCA cycle. The reduction of a quinone rather than
NAD+ makes the reaction essentially irreversible in the
direction of malate oxidation to oxaloacetate. Both forms
of malate dehydrogenase are active in E. coli; disruption
of this form causes less phenotypic change. In some
bacteria, this form is the only or the more important
malate dehydrogenase [Energy metabolism, TCA cycle].
Length = 483
Score = 32.1 bits (73), Expect = 2.7
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 1205 WELGLA-ETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCI 1263
WEL +A + Q + + +G +L+ L D +IA LLGA G STA I L
Sbjct: 381 WELIVAGQRVQVIKKDPEKGGGVLEFGTTLIADADGSIAGLLGASP-GASTAVSIMLD-- 437
Query: 1264 MMRKCHKNTCPVGIATQD---PVLREKFAGEPE 1293
++ +C + P +K + EP
Sbjct: 438 LLERCFPERYQSWLPKLKEMVPSYGKKLSSEPA 470
>gnl|CDD|181080 PRK07680, PRK07680, late competence protein ComER; Validated.
Length = 273
Score = 31.5 bits (72), Expect = 3.4
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 20/80 (25%)
Query: 969 EYSKRIQELNKTCNLRGLLKFKEADVKIPLEEVEP----ASEIV-----------KRFCT 1013
+ R E ++ L L + PL E +S+IV +RF
Sbjct: 131 TFGSRCSEEDQQ-KLERLFSN----ISTPLVIEEDITRVSSDIVSCGPAFFSYLLQRFID 185
Query: 1014 GAMSYGSISLEAHTTLATAM 1033
A+ +IS E TTLA+ M
Sbjct: 186 AAVEETNISKEEATTLASEM 205
>gnl|CDD|227520 COG5193, LHP1, La protein, small RNA-binding pol III transcript
stabilizing protein and related La-motif-containing
proteins involved in translation [Posttranslational
modification, protein turnover, chaperones / Translation,
ribosomal structure and biogenesis].
Length = 438
Score = 31.9 bits (72), Expect = 3.8
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 1614 NLLPKF--IKVFPRDYKRVLASMKVAAAQEAAEDAVKDAEEPDEADFKEKDAFEELKKMA 1671
+ + KF F D +LA+MK +A ++A E F KK
Sbjct: 306 SFIGKFYRNLSFGGDKNLILAAMKEVVQNKATNHLEIALGSIEDAQKNEAKDFSPGKKYF 365
Query: 1672 IASLNEKSNQEAEQVEPTK 1690
I + + +E + +
Sbjct: 366 I-----RKKEWSEWLMESN 379
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family
protein.
Length = 348
Score = 31.5 bits (71), Expect = 4.6
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 21/97 (21%)
Query: 1310 MSQLGFRTITEMIGRSDML--------EVDKEVTKTNE-----KLENIDLSLLLRPAADL 1356
M + F+T+ E++ + L D E N + IDLSLLL + D
Sbjct: 1 MEKPKFKTVQEVVAAGEGLPERYLHTPTGDGEGQPLNGAVPEMDIPAIDLSLLLSSSDDG 60
Query: 1357 RPEAAQY--------CVQKQDHGLDMALDQKLIKLSK 1385
R E ++ VQ +HG+ A K+ KL+K
Sbjct: 61 REELSKLHSALSTWGVVQVMNHGITEAFLDKIYKLTK 97
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria, where
L7/L12 forms either two or three homodimers and each
homodimer binds to the extended C-terminal helix of L10.
L7/L12 is attached to the ribosome through L10 and is the
only ribosomal protein that does not directly interact
with rRNA. Archaeal L12p is believed to function in a
similar fashion. However, hybrid ribosomes containing the
large subunit from E. coli with an archaeal stalk are
able to bind archaeal and eukaryotic elongation factors
but not bacterial elongation factors. In several
mesophilic and thermophilic archaeal species, the binding
of 23S rRNA to protein L11 and to the L10/L12p pentameric
complex was found to be temperature-dependent and
cooperative.
Length = 106
Score = 29.4 bits (66), Expect = 4.7
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 1632 ASMKVAAAQEAAEDAVKDAEEPDEADFKEKDAFEE 1666
A+ AAA AAE+ ++ EE + + ++++ EE
Sbjct: 63 AAAPAAAAAAAAEEKAEEKEEEKKKEEEKEEEEEE 97
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA;
Provisional.
Length = 387
Score = 30.9 bits (70), Expect = 5.9
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1628 KRVLASMKVAAAQEAAEDAVKDAEEPDEADFKEKDAFEELKKMAIASLNEKSNQEAEQ 1685
K+ A K A EAA+ A +A++ EA+ K A E KK A A +K+ EA++
Sbjct: 161 KKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAK-AAAEAKKKAEAEAKKKAAAEAKK 217
Score = 30.9 bits (70), Expect = 6.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 1628 KRVLASMKVAAAQEAAEDAVKDAEEPDEADFKEKDAFEELKKMAIASLNEKSNQEAE 1684
K+ A AA EA + A +A++ A+ K+K A E A A+ K+ E
Sbjct: 185 KKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKA 241
>gnl|CDD|224311 COG1393, ArsC, Arsenate reductase and related proteins, glutaredoxin
family [Inorganic ion transport and metabolism].
Length = 117
Score = 29.5 bits (67), Expect = 6.3
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 1289 AGEPEHVINFF--FMLAEELREIMSQLGFRTITEMIGRSDM----LEVDKEVTKTNEKLE 1342
G I++ EEL++I+S+LG + E+I L +DKE E +E
Sbjct: 24 HGIEYTFIDYLKTPPSREELKKILSKLGD-GVEELINTRGTTYRELNLDKEDLSDEELIE 82
Query: 1343 NI--DLSLLLRP 1352
+ + SL+ RP
Sbjct: 83 ALLENPSLIKRP 94
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 30.1 bits (68), Expect = 6.5
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 1620 IKVFPRDYKRVLASMKVAAAQEAAEDAVKDAEEPDEADFKEKDAFEELKKMAIASLNEKS 1679
I +FP + + + + E+ + ++ + KEK E+L K + +
Sbjct: 88 INLFPEE-----SEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNT 142
Query: 1680 NQEAEQVEPTKRPS 1693
++A + TK+
Sbjct: 143 TKKATKKTTTKKEE 156
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type)
[DNA replication, recombination, and repair].
Length = 1444
Score = 31.1 bits (71), Expect = 6.6
Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 20/126 (15%)
Query: 1571 NPELVDLDKVEEEEDIITLRMMI---QQHQRYTNSQLAKEVLADFENLLPKFIKVFPRDY 1627
E+ L K+ EEE + + I + + + L + D+ + L +K F RD
Sbjct: 226 TEEIKPLIKINEEETRVKVEGYIFKIEIKELKSGRTLLNIKVTDYTSSL--ILKKFLRDE 283
Query: 1628 K--RVLASMKVAAAQEAAEDAVKDAEEPDEADFKEKDAFEELKKMAIASLNEKSNQEAEQ 1685
+ + +K +A + + D F M I +NE N + +
Sbjct: 284 EDEKKFDGIKKGMWVKARGNV-------------QLDTFTRDLTMIINDINEIENAKRKD 330
Query: 1686 VEPTKR 1691
+ KR
Sbjct: 331 LAKEKR 336
>gnl|CDD|234516 TIGR04236, seadorna_VP2, seadornavirus VP2 protein. This protein
family occurs in the seadornavirus virus group, with the
designation VP2 in Banna virus, Kadipiro virus, and Liao
ning virus.
Length = 953
Score = 31.0 bits (70), Expect = 6.6
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 684 LSLKGPLLSIEEMEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEG 743
L+L + S E + ++Y ++V+D + + + ET+ ++ A A K+G
Sbjct: 688 LTLVRAIFSPLEPTSASIVSYSNNLNRVIDHVWESAADKPLISETMLKLLAAAGTTGKDG 747
Query: 744 Y 744
Y
Sbjct: 748 Y 748
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta; Provisional.
Length = 752
Score = 30.9 bits (70), Expect = 7.3
Identities = 24/102 (23%), Positives = 39/102 (38%)
Query: 1655 EADFKEKDAFEELKKMAIASLNEKSNQEAEQVEPTKRPSRVADAVKHRGFIAYEREGVQY 1714
E D D E LK+M E + + + ++K + A ER +
Sbjct: 242 EFDGHLVDFDEMLKRMGAYKTIEGEELLKLEERTAAWRAELRKSMKPKERTAIERVPMPE 301
Query: 1715 RDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVC 1756
DP R ++ E + T++ RC+DC P C + C
Sbjct: 302 LDPEYRAHNRFEEVNLGLTKEQAMTEAKRCLDCKNPGCVEGC 343
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy
production and conversion].
Length = 387
Score = 30.6 bits (70), Expect = 8.0
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 12/43 (27%)
Query: 463 YLGATLDRNGLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRK 505
YL LDR+ RP V+MAS G +DI E+V K
Sbjct: 107 YLSIVLDRSSRRP----------VLMASTEGGMDI--EEVAEK 137
>gnl|CDD|232844 TIGR00143, hypF, [NiFe] hydrogenase maturation protein HypF. A
previously described regulatory effect of HypF
mutatation is attributable to loss of activity of a
regulatory hydrogenase. A zinc finger-like region
CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported
the regulatory hypothesis. However, more recent work
(PUBMED:11375153) shows the direct effect is on the
activity of expressed hydrogenases with nickel/iron
centers, rather than on expression [Protein fate,
Protein modification and repair].
Length = 711
Score = 30.5 bits (69), Expect = 9.5
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 534 SLARPYGEWLQRQKIELKNIVESIHKSERVSPGIAGVLPASNDDDNMENMGIHGLLAPLK 593
S A P L R+K ++K + +I + P I +LP + +H LL L
Sbjct: 238 SPAAPI--VLLRKKPDIK-LAPNIAPN---LPTIGVMLPYT---------PLHHLLLQLL 282
Query: 594 AFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNRE 633
AF + + + LPMA D E L + A ++ NR
Sbjct: 283 AFPLVMTSANLPGLPMAIDNAEILDKLQGIADGFLVHNRR 322
>gnl|CDD|118809 pfam10285, Luciferase_cat, Luciferase catalytic domain. This domain
is the catalytic domain of dinoflagellate luciferase.
Luciferase is involved in catalyzing the light emitting
reaction in bioluminescence. The structure of this domain
has been solved. The core part of the domain is a 10
stranded beta barrel that is structurally similar to
lipocalins and FABP.
Length = 296
Score = 30.3 bits (68), Expect = 9.9
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 1203 LPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEE 1249
LPW GL E N L GR I + GQ ++ + +LGA E
Sbjct: 65 LPWPAGLPEPGYVPKTNPLHGRWITVSGGQAAFIKEAIKSGMLGAAE 111
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner membrane
complex of itself with TolQ and TolR to the outer
membrane complex of TolB and OprL (also called Pal). Most
of the length of the protein consists of low-complexity
sequence that may differ in both length and composition
from one species to another, complicating efforts to
discriminate TolA (the most divergent gene in the tol-pal
system) from paralogs such as TonB. Selection of members
of the seed alignment and criteria for setting scoring
cutoffs are based largely conserved operon struction.
//The Tol-Pal complex is required for maintaining outer
membrane integrity. Also involved in transport (uptake)
of colicins and filamentous DNA, and implicated in
pathogenesis. Transport is energized by the proton motive
force. TolA is an inner membrane protein that interacts
with periplasmic TolB and with outer membrane porins
ompC, phoE and lamB [Transport and binding proteins,
Other, Cellular processes, Pathogenesis].
Length = 346
Score = 30.2 bits (68), Expect = 10.0
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 1637 AAAQEAAEDAVK-DAEEPDEADFKEKDAFEELKKMAIASLNEKSNQEAEQ 1685
A ++AAE K +AE +A+ K K EE K A A+ K+ EA
Sbjct: 163 EAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAA-KAKAAAEAAA 211
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 91,084,886
Number of extensions: 9370326
Number of successful extensions: 9163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9022
Number of HSP's successfully gapped: 96
Length of query: 1760
Length of database: 10,937,602
Length adjustment: 111
Effective length of query: 1649
Effective length of database: 6,014,308
Effective search space: 9917593892
Effective search space used: 9917593892
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (29.1 bits)