RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 000266
(1760 letters)
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 852 bits (2202), Expect = 0.0
Identities = 359/766 (46%), Positives = 494/766 (64%), Gaps = 22/766 (2%)
Query: 588 LLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQV 647
L +AFG T+E +E+++ PM +DG EA+GSMG+D+P+AV+S++ + +F+Q F+QV
Sbjct: 25 LRRRQQAFGLTMEDMELILHPMVEDGKEAIGSMGDDSPIAVLSDKYRGLHHFFRQNFSQV 84
Query: 648 TNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGW 707
TNPPID +RE+ V S++ +G G + + E Q L L+ P+L+ E A++ +Y G
Sbjct: 85 TNPPIDSLRERRVMSLKTRLGNLGNILDEDETQTRLLQLESPVLTTAEFRAMR--DYMGD 142
Query: 708 RSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRVAVSSLLAV 767
+ +D T+ D G L + L RI E DA++ G T ++L+D A R A+ ++LA
Sbjct: 143 TAAEIDATFPVDGGPEALRDALRRIRQETEDAVRGGATHVILTDEAMGPARAAIPAILAT 202
Query: 768 GAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQVDGKI 827
GAVH HL+++ RT L V +AE + H+F L+G GA + YLA EAI G
Sbjct: 203 GAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVGATTVNAYLAQEAIAERHRRGLF 262
Query: 828 PPKASGEFHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKC 887
++ + Y KA + G++K+++KMGIS ++SY+G FEA+GLS ++ +
Sbjct: 263 GS------MPLEKGMANYKKAIDDGLLKIMSKMGISVISSYRGGGNFEAIGLSRALVAEH 316
Query: 888 FAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRKGGEIHLN 947
F SR+ G + L H A+ + VALP G Y +RK G+ H
Sbjct: 317 FPAMVSRISGIGLNGIQKKVLEQHATAYNEEV--------VALPVGGFYRFRKSGDRHGW 368
Query: 948 DPLAIAKLQEAARGNSVAAYKEYSKRIQELNKTCNLRGLLKFKEADVKIPLEEVEPASEI 1007
+ I LQ+A +S +K+YS+++ + LR LL+ + +P++EVE + I
Sbjct: 369 EGGVIHTLQQAVTNDSYTTFKKYSEQVNKRPPMQ-LRDLLELRSTKAPVPVDEVESITAI 427
Query: 1008 VKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSRMEPLSDGSMNPKRSAI 1067
KRF T MS G++S EAH TL AMN+IG KS++GEGGE P+R P +G SAI
Sbjct: 428 RKRFITPGMSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNGDNW--NSAI 485
Query: 1068 KQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLIS 1127
KQVASGRFGV++ YL EL+IK+AQGAKPGEGG+LPG KV IA R+ST GV LIS
Sbjct: 486 KQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLIS 545
Query: 1128 PPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGVIASGVVKGHADHVLISGHD 1187
PPPHHDIYSIEDLAQLIYDLK NP A+++VKLVS +G+G IA+GV K +AD +LISG+
Sbjct: 546 PPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNS 605
Query: 1188 GGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGA 1247
GGTGAS T IK AGLPWE+GL+E HQ L N LR R L+TDG LKTGRD+ IAA+LGA
Sbjct: 606 GGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGA 665
Query: 1248 EEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELR 1307
EEFG TA LI +GCIM+R+CH NTCPVG+ QD LR+KF G PE V+N F LAEE+R
Sbjct: 666 EEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVR 725
Query: 1308 EIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDLSLLLRPA 1353
EI++ LGFR++ E+IGR+D+L V++ E L+++DL+ L
Sbjct: 726 EILAGLGFRSLNEVIGRTDLLHQ---VSRGAEHLDDLDLNPRLAQV 768
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId: 1143]}
Length = 809
Score = 843 bits (2179), Expect = 0.0
Identities = 371/796 (46%), Positives = 488/796 (61%), Gaps = 46/796 (5%)
Query: 588 LLAPLKAFGYTVEALEMLMLPMAKDGTEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQV 647
+L AFGYT E +EM+++PMA G E MG+D PLAV+S++ +L ++YFKQ FAQV
Sbjct: 13 VLQQQAAFGYTAEDVEMVVVPMASQGKEPTFCMGDDTPLAVLSHKPRLLYDYFKQRFAQV 72
Query: 648 TNPPIDPIREKIVTSMECMIGPEGVLTETTEEQCHRLSLKGPLLSIEEMEAIKRMNYRGW 707
TNPPIDP+RE +V S+ +G G L E E + L+ PL++ E++AIK +
Sbjct: 73 TNPPIDPLRENLVMSLAMFLGKRGNLLEPKAESARTIKLRSPLVNEVELQAIKTGQLQ-- 130
Query: 708 RSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTLLVLSDRA----FSSKRVAVSS 763
+ Y D G LE+ L + A ++ G +LVL+DR + + +
Sbjct: 131 -VAEVSTLYDLD-GVNSLEDALTNLVKTAIATVQAGAEILVLTDRPNGAILTENQSFIPP 188
Query: 764 LLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYLATEAIWRLQV 823
LLAVGAVHHHL++ R + LIV++A+ HHF LVG+GA AICPYLA E++ + +
Sbjct: 189 LLAVGAVHHHLIRAGLRLKASLIVDTAQCWSTHHFACLVGYGASAICPYLALESVRQWWL 248
Query: 824 DGKIPPKASGEFHSK---DELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLS 880
D K + +K Y ++ G+ K+L+KMGIS LASY GAQIFEA+GL
Sbjct: 249 DEKTQKLMENGRLDRIDLPTALKNYRQSVEAGLFKILSKMGISLLASYHGAQIFEAIGLG 308
Query: 881 SEVIEKCFAGTPSRVDGATFEVLASDALHLHELAFPTRILPPGSAEAVALPNPGDYHWRK 940
+E++E FAGT SRV G T +A + + H +AFP L N G ++R
Sbjct: 309 AELVEYAFAGTTSRVGGLTIADVAGEVMVFHGMAFPEMAKK--------LENFGFVNYRP 360
Query: 941 GGEIHLNDPLAIAKLQE-------AARGNSVAAYKEYSKRIQELNK--TCNLRGLLKFKE 991
GGE H+N P L + GN+ AY Y Q L LR LL F
Sbjct: 361 GGEYHMNSPEMSKSLHKAVAAYKVGGNGNNGEAYDHYELYRQYLKDRPVTALRDLLDFNA 420
Query: 992 ADVKIPLEEVEPASEIVKRFCTGAMSYGSISLEAHTTLATAMNKIGGKSNTGEGGEQPSR 1051
I LEEVE IVKRFCTG MS G++S EAH TLA AMN++G KSN+GEGGE R
Sbjct: 421 DQPAISLEEVESVESIVKRFCTGGMSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVR 480
Query: 1052 MEPLSDGSM----------------NPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQG 1095
L D + SAIKQ+ASGRFGV+ YL + +L+IKMAQG
Sbjct: 481 YLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQG 540
Query: 1096 AKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGAR 1155
AKPGEGG+LPG KV IA+ R S GV LISPPPHHDIYSIEDLAQLIYDL NP A+
Sbjct: 541 AKPGEGGQLPGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQ 600
Query: 1156 ISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQT 1215
+SVKLV+E G+G IA+GV K +AD + ISGHDGGTGAS + IK+AG PWELG+ E H+
Sbjct: 601 VSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRV 660
Query: 1216 LVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPV 1275
L+ N LR R +L+ DG LKTG DV +AAL+GAEE+GF + +I GCIM R CH N CPV
Sbjct: 661 LMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPV 720
Query: 1276 GIATQDPVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVT 1335
G+ATQ LR++F G P V+NFF+ +AEE+R +++ LG+R++ ++IGR+D+L+V +V
Sbjct: 721 GVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDLLKVRSDV- 779
Query: 1336 KTNEKLENIDLSLLLR 1351
K +N+ L LL
Sbjct: 780 -QLSKTQNLTLDCLLN 794
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase,
N-terminal domain {Azospirillum brasilense [TaxId: 192]}
Length = 422
Score = 473 bits (1219), Expect = e-153
Identities = 179/432 (41%), Positives = 255/432 (59%), Gaps = 13/432 (3%)
Query: 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAK 174
CGVGF+A + G+ R + +E L + HRGA + TGDGAGI VA+P FFK+ K
Sbjct: 1 CGVGFIAAIDGKPRRSVVEKGIEALKAVWHRGAVDADGKTGDGAGIHVAVPQKFFKDHVK 60
Query: 175 NVGFQLPPPGEYAVGMFFLPQSE-NRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGN 233
+G P + AVG FLP+ + +E + + + G+ + GWR VP + +G
Sbjct: 61 VIGH-RAPDNKLAVGQVFLPRISLDAQEACRCIVETEILAFGYYIYGWRQVPINVDIIGE 119
Query: 234 SALQTEPVVEQVFL-TPSLRSKVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLS 292
A T P +EQ+ + S FE +YI+RR A++ DFYICSLS
Sbjct: 120 KANATRPEIEQIIVGNNKGVSDEQFELDLYIIRRRIEKAVKGE------QINDFYICSLS 173
Query: 293 SRTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNG 352
+R+++YKG Q+ +Y DL +ERF S A+ H R+STNTFP+W AQP R+L HNG
Sbjct: 174 ARSIIYKGMFLAEQLTTFYP-DLLDERFESDFAIYHQRYSTNTFPTWPLAQPFRMLAHNG 232
Query: 353 EINTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGR 412
EINT++GNVNWMKA E ++ G M+ L P++ V SDSG+ D V E++VRAGR
Sbjct: 233 EINTVKGNVNWMKAHETRMEHPAFG---THMQDLKPVIGVGLSDSGSLDTVFEVMVRAGR 289
Query: 413 SLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRNG 472
+ P MM++P+A + + KAL +Y +++MEPWDGPA ++ TDGR++ +DRNG
Sbjct: 290 TAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDGRWVVGGMDRNG 349
Query: 473 LRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQQ 532
LRP R+ IT G +I SE G+V I V+ KGRL PG M+ VD + + D LK
Sbjct: 350 LRPMRYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMIAVDLQSGKLYRDRELKDH 409
Query: 533 YSLARPYGEWLQ 544
+ +P+ +W+Q
Sbjct: 410 LATLKPWDKWVQ 421
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase,
N-terminal domain {Synechocystis sp. [TaxId: 1143]}
Length = 430
Score = 472 bits (1215), Expect = e-152
Identities = 187/439 (42%), Positives = 269/439 (61%), Gaps = 16/439 (3%)
Query: 115 CGVGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILVALPHDFFKEAAK 174
CGVGF+A L G+ + AL+ L M HRG C + ++GDGAG++ A+P + +
Sbjct: 1 CGVGFIANLRGKPDHTLVEQALKALGCMEHRGGCSADNDSGDGAGVMTAIPRELLAQWFN 60
Query: 175 NVGFQLPPPGEYAVGMFFLPQSENRREESKKVFTKVAESLGHTVLGWRAVPTDNSGLGNS 234
+P VGM FLPQ + RE ++ +V TVLGWR VP ++ LG
Sbjct: 61 TRNLPMPDGDRLGVGMVFLPQEPSAREVARAYVEEVVRLEKLTVLGWREVPVNSDVLGIQ 120
Query: 235 ALQTEPVVEQVFLT-PSLRSKVDFENQMYILRRVSMAAIRESLNLEHGGAKDFYICSLSS 293
A +P +EQ+ +T P + + + ++YI R + + E DFY+CS S
Sbjct: 121 AKNNQPHIEQILVTCPEGCAGDELDRRLYIARSIIGKKLAE----------DFYVCSFSC 170
Query: 294 RTVVYKGQLKPIQMKDYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRILGHNGE 353
RT+VYKG ++ I + ++Y DL N +TS A+ H RFSTNT P W AQPMR+LGHNGE
Sbjct: 171 RTIVYKGMVRSIILGEFYL-DLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMRLLGHNGE 229
Query: 354 INTLRGNVNWMKAREGLLKCKELGLSKDEMKKLLPIVDVSSSDSGAFDGVLELLVRAGRS 413
INTL GN+NWM ARE + + G +K E++ L PIV+ ++SDS D LELLVR GRS
Sbjct: 230 INTLLGNINWMAAREK--ELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGRS 287
Query: 414 LPEAVMMMIPEAWQNDKNMD--PQRKALYEYFSALMEPWDGPALISFTDGRYLGATLDRN 471
EA M+++PEA++N + P+ ++Y+S L EPWDGPAL+ F+DG+ +GA LDRN
Sbjct: 288 PLEAAMILVPEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDGKIVGAGLDRN 347
Query: 472 GLRPGRFYITHSGRVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFEKRIVVDDEALKQ 531
GLRP R+ IT +++ SE GVVD+P D++ KGRL PG M+ VD ++ ++ + +KQ
Sbjct: 348 GLRPARYCITKDDYIVLGSEAGVVDLPEVDIVEKGRLAPGQMIAVDLAEQKILKNYQIKQ 407
Query: 532 QYSLARPYGEWLQRQKIEL 550
Q + PYGEW++ Q+ +
Sbjct: 408 QAAQKYPYGEWIKIQRQTV 426
>d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate synthase,
C-terminal domain {Azospirillum brasilense [TaxId: 192]}
Length = 270
Score = 281 bits (719), Expect = 2e-86
Identities = 116/256 (45%), Positives = 158/256 (61%)
Query: 1376 LDQKLIKLSKAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPADTIHIKLTG 1435
LD +++ ++ E+ + + N RA+GT LS VT+++ + GL I I+L G
Sbjct: 9 LDARIVADARPLFEEGEKMQLAYNARNTQRAIGTRLSSMVTRKFGMFGLQPGHITIRLRG 68
Query: 1436 SAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIVIGNVALYG 1495
+AGQS+GAF GI LE+ GD+NDYVGKGLSGG IV P S + N +IGN LYG
Sbjct: 69 TAGQSLGAFAVQGIKLEVMGDANDYVGKGLSGGTIVVRPTTSSPLETNKNTIIGNTVLYG 128
Query: 1496 ATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGG 1555
AT+G+ + G A ERF VRNSGA VVEG G +GCEYMTGGT V+LG+ G NFAAGM+GG
Sbjct: 129 ATAGKLFAAGQAGERFAVRNSGATVVVEGCGSNGCEYMTGGTAVILGRVGDNFAAGMTGG 188
Query: 1556 IAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKEVLADFENL 1615
+AYV D+D N E V ++E L+ +I++H T S+ A E+L D+
Sbjct: 189 MAYVYDLDDSLPLYINDESVIFQRIEVGHYESQLKHLIEEHVTETQSRFAAEILNDWARE 248
Query: 1616 LPKFIKVFPRDYKRVL 1631
+ KF +V P++ L
Sbjct: 249 VTKFWQVVPKEMLNRL 264
>d1ofda1 b.80.4.1 (A:1240-1507) Alpha subunit of glutamate synthase,
C-terminal domain {Synechocystis sp. [TaxId: 1143]}
Length = 268
Score = 269 bits (688), Expect = 3e-82
Identities = 110/264 (41%), Positives = 150/264 (56%), Gaps = 3/264 (1%)
Query: 1370 HGLDMALDQKLIKLS--KAALEKALPVYIETPVCNVNRAVGTMLSHEVTKRYHLVGLPAD 1427
H LD ++ + A+ + N +R VGT LS + K+Y G
Sbjct: 2 HSNGPVLDDDILADPDIQEAINHQTTATKTYRLVNTDRTVGTRLSGAIAKKYGNNGFE-G 60
Query: 1428 TIHIKLTGSAGQSVGAFLCPGILLELEGDSNDYVGKGLSGGKIVAYPPKGSLFDPKVNIV 1487
I + G+AGQS GAF G+ L L+G++NDYVGKG++GG+IV P + F P+ N++
Sbjct: 61 NITLNFQGAAGQSFGAFNLDGMTLHLQGEANDYVGKGMNGGEIVIVPHPQASFAPEDNVI 120
Query: 1488 IGNVALYGATSGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRN 1547
IGN LYGAT G Y NG A ERF VRNS +AV+EG GDH CEYMTGG +VVLG GRN
Sbjct: 121 IGNTCLYGATGGNLYANGRAGERFAVRNSVGKAVIEGAGDHCCEYMTGGVIVVLGPVGRN 180
Query: 1548 FAAGMSGGIAYVLDVDGKFRSRCNPELVDLDKVEEEEDIITLRMMIQQHQRYTNSQLAKE 1607
AGM+GG+AY LD G + NPE++ L ++ + L+ +I H +T S K
Sbjct: 181 VGAGMTGGLAYFLDEVGDLPEKINPEIITLQRITASKGEEQLKSLITAHVEHTGSPKGKA 240
Query: 1608 VLADFENLLPKFIKVFPRDYKRVL 1631
+LA++ + L KF + P K
Sbjct: 241 ILANWSDYLGKFWQAVPPSEKDSP 264
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 153 bits (387), Expect = 3e-41
Identities = 55/365 (15%), Positives = 108/365 (29%), Gaps = 63/365 (17%)
Query: 996 IPLEEVEPASEIVKR-----FCTGAMSYGS--ISLEAHTTLATAMNKIGGKSNTGEGGEQ 1048
+ LE+V+ +++I + AM+ G ++ E + +LA A ++ G G
Sbjct: 18 LALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQ--- 74
Query: 1049 PSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHK 1108
+ + S R N + L +
Sbjct: 75 ----------------MSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEM 118
Query: 1109 VIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGV 1168
+ + + ++ +++ + Q+ + + VK V
Sbjct: 119 IGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSV-----PVIVKEVGFGMSKA 173
Query: 1169 IASGVVKGHADHVLISGHDGGTGAS--RWTGIKNAGLPWELGLAETHQTLVANDLRGRTI 1226
A + + A V I G+ G + + G++ +
Sbjct: 174 SAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPAST 233
Query: 1227 LQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLRE 1286
+ G L+ DVA A LGA G + L L
Sbjct: 234 MIASGGLQDALDVAKAIALGASCTGMAGHFLKAL-------------------------- 267
Query: 1287 KFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKEVTKTNEKLENIDL 1346
E ++ ++ EEL+ IM+ LG RTI ++ + L + E T ++
Sbjct: 268 -TDSGEEGLLEEIQLILEELKLIMTVLGARTIADL--QKAPLVIKGE-THHWLTERGVNT 323
Query: 1347 SLLLR 1351
S
Sbjct: 324 SSYSV 328
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 116 bits (290), Expect = 1e-28
Identities = 59/344 (17%), Positives = 98/344 (28%), Gaps = 61/344 (17%)
Query: 995 KIPLEEVEPASEIVKR-----FCTGAMSYGSISL-EAHTTLATAMNKIGGKSNTGEGGEQ 1048
+ L EV+ + + + F GAM+ G + + LA A +G G G
Sbjct: 18 GLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGR-- 75
Query: 1049 PSRMEPLSDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHK 1108
+ A F V + +AQ + G L +
Sbjct: 76 ---------------ILLERPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVE 120
Query: 1109 VIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIYDLKNANPGARISVKLVSEAGVGV 1168
++ A+ + + +E LA+L+ + VK V
Sbjct: 121 MLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELL------PLPFPVMVKEVGHGLSRE 174
Query: 1169 IASGVVKGHADHVLISGHDGGTG----ASRWTGIKNAGLPWELGLAETHQTLVANDLRGR 1224
A + V ++G G + G E+G+ L ++
Sbjct: 175 AALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPH 234
Query: 1225 TILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVL 1284
L G + TG D A A LGA+ + L
Sbjct: 235 LPLVASGGVYTGTDGAKALALGADLLAVARPLLRPA------------------------ 270
Query: 1285 REKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDML 1328
E V + EELR + +G R E GR + +
Sbjct: 271 ----LEGAERVAAWIGDYLEELRTALFAIGARNPKEARGRVERV 310
>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 182
Score = 44.2 bits (104), Expect = 3e-05
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 1687 EPTKRPSR--VADAVKHRGFIAYEREGVQYRDP-NIRMNDWKEVMEESKPGPLLKTQSAR 1743
P + + K ++R + N++ ++ + ++ R
Sbjct: 18 NPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFDDIKHTTLGERGALREAMR 77
Query: 1744 CMDCGTPFCHQVC 1756
C+ C C + C
Sbjct: 78 CLKCADAPCQKSC 90
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 45.3 bits (106), Expect = 6e-05
Identities = 31/153 (20%), Positives = 49/153 (32%), Gaps = 29/153 (18%)
Query: 1177 HADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTG 1236
G G ++ + LAET L +L+ + + DG ++ G
Sbjct: 259 DVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRG 318
Query: 1237 RDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVI 1296
DV A LGA+ G L C G V
Sbjct: 319 TDVLKALCLGAKGVGLGRPFLYANSC--------------------------YGR-NGVE 351
Query: 1297 NFFFMLAEELREIMSQLGFRTITEMIGRSDMLE 1329
+L +E+ M LG +I E+ + D+L+
Sbjct: 352 KAIEILRDEIEMSMRLLGVTSIAEL--KPDLLD 382
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 353
Score = 33.8 bits (76), Expect = 0.20
Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 32/98 (32%)
Query: 1230 DGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFA 1289
D + G D+ A LGAE A L L
Sbjct: 281 DSGFRRGSDIVKALALGAEAVLLGRATLYGLAA--------------------------R 314
Query: 1290 GEP--EHVINFFFMLAEELREIMSQLGFRTITEMIGRS 1325
GE + V+ +L ++ ++Q+G IT +
Sbjct: 315 GETGVDEVLT---LLKADIDRTLAQIGCPDITS-LSPD 348
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 349
Score = 33.3 bits (75), Expect = 0.27
Identities = 22/134 (16%), Positives = 35/134 (26%), Gaps = 29/134 (21%)
Query: 1192 ASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEEFG 1251
+ L + + +VA + G ++TG DV A LGA
Sbjct: 241 GIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGG-VRTGTDVLKALALGARCIF 299
Query: 1252 FSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEELREIMS 1311
L L + V +L EL M+
Sbjct: 300 LGRPILWGLA---------------------------CKGEDGVKEVLDILTAELHRCMT 332
Query: 1312 QLGFRTITEMIGRS 1325
G +++ E I
Sbjct: 333 LSGCQSVAE-ISPD 345
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 359
Score = 32.6 bits (73), Expect = 0.42
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 29/112 (25%)
Query: 1222 RGRTILQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQD 1281
+GR + DG ++ G DV A LGA + +L
Sbjct: 277 QGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLA-------------------- 316
Query: 1282 PVLREKFAGEPEHVINFFFMLAEELREIMSQLGFRTITEMIGRSDMLEVDKE 1333
A V M+ +E M+ G R++ E+ + D +
Sbjct: 317 -------AEGEAGVKKVLQMMRDEFELTMALSGCRSLKEI--SRSHIAADWD 359
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme A [TaxId: 1358]}
Length = 311
Score = 31.1 bits (69), Expect = 1.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 1302 LAEELREIMSQLGFRTITEMIGR 1324
+ +EL EIM+Q G+++I + G+
Sbjct: 285 IIKELEEIMNQKGYQSIADFHGK 307
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma
brucei [TaxId: 5691]}
Length = 312
Score = 30.3 bits (67), Expect = 1.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 1302 LAEELREIMSQLGFRTITEMIGR 1324
L +EL+EIM+ G++T+ E GR
Sbjct: 285 LNKELQEIMTNKGYKTLDEFRGR 307
>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium
falciparum [TaxId: 5833]}
Length = 409
Score = 30.3 bits (67), Expect = 2.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 1302 LAEELREIMSQLGFRTITEMIGR 1324
+ EL ++ Q G+ + E IGR
Sbjct: 385 IKRELNHLLYQRGYYNLKEAIGR 407
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 367
Score = 30.0 bits (66), Expect = 3.0
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 1302 LAEELREIMSQLGFRTITEMIGRS 1325
+ EL ++ + GF +T+ IG
Sbjct: 341 VKRELEALLKEQGFGGVTDAIGAD 364
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 29.6 bits (65), Expect = 3.2
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 1302 LAEELREIMSQLGFRTITEMIG 1323
+ ++L E+M Q ++ +I
Sbjct: 283 IIDKLPELMDQYRIESLESLIQ 304
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 225
Score = 29.5 bits (65), Expect = 3.3
Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 6/148 (4%)
Query: 754 FSSKRVAVSSLLAVGAVHHHLVKNLERTRIGLIVESAEPREVHHFCTLVGFGADAICPYL 813
++ ++ + L G V ++ LE+ + + + AIC
Sbjct: 64 VATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQ 123
Query: 814 ATEAIWRLQVDGKIPPKASGEFHSKDE--LVKKYFKASNYGMMKVLAKMGISTLASYKGA 871
T + V ++PP A + + A + + I +
Sbjct: 124 RTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLK 183
Query: 872 QIFEALGLSSEVIEKCFAGTPSRVDGAT 899
I + + E+ G PS VD +
Sbjct: 184 SINKW----AYEGERVIHGNPSGVDNSV 207
>d1vpra1 b.60.1.7 (A:868-1218) Dinoflagellate luciferase
{Lingulodinium polyedrum [TaxId: 160621]}
Length = 351
Score = 29.1 bits (65), Expect = 5.1
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 1203 LPWELGLAETHQTLVANDLRGRTILQTDGQLKTGRDVAIAALLGAEE 1249
LPW GL E N L GR I + GQ ++ + +LGA E
Sbjct: 141 LPWPAGLPEPGYVPKTNPLHGRWITVSGGQAAFIKEAIKSGMLGAAE 187
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis
[TaxId: 1423]}
Length = 278
Score = 28.8 bits (63), Expect = 5.4
Identities = 6/51 (11%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 696 MEAIKRMNYRGWRSKVLDITYSKDHGRRGLEETLDRICAEARDAIKEGYTL 746
+ A+K + + S +++ + ++ + EE + D + + +++
Sbjct: 231 LSALKEIGFSDVVS--VEL-FRPEYYKLTAEEAIQTAKKTTVDVVSKYFSM 278
>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase,
N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Length = 234
Score = 28.4 bits (62), Expect = 6.3
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 15/49 (30%)
Query: 115 CG-VGFVAELSGESSRKTITDALEMLVRMAHRGACGCETNTGDGAGILV 162
CG G + L + HRG +GAGI+
Sbjct: 1 CGVFGIW------GHEEAPQITYYGLHSLQHRGQ--------EGAGIVA 35
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 27.2 bits (60), Expect = 6.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 405 ELLVRAGRSLPEAVMMMIPEAWQNDKNMDPQRKALYEYFSALMEPWD 451
E L +A EA+ PE+ + +DPQ + +YF + P D
Sbjct: 5 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMD 51
>d1vdwa_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 253
Score = 28.4 bits (62), Expect = 8.0
Identities = 12/120 (10%), Positives = 29/120 (24%), Gaps = 21/120 (17%)
Query: 1638 AAQEAAEDAVKDAEEPDEADFKEKDAFEELKKMAIASLNEKSNQEAEQVEPTKRPSRVAD 1697
++ A D ++D + F A E + + ++ AE
Sbjct: 4 TWRKIAIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAEN------------ 51
Query: 1698 AVKHRGFIAYEREGVQYRDPNIRMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQVCI 1757
I + N+ + + + S ++ V +
Sbjct: 52 ------II---ISKFKDLGVNVVSEEIGRIDQGSDYTVVVDPLDGSYNFINGIPFFAVSV 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,529,877
Number of extensions: 318170
Number of successful extensions: 1022
Number of sequences better than 10.0: 1
Number of HSP's gapped: 987
Number of HSP's successfully gapped: 26
Length of query: 1760
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1662
Effective length of database: 1,062,056
Effective search space: 1765137072
Effective search space used: 1765137072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.2 bits)