Query 000268
Match_columns 1757
No_of_seqs 1320 out of 4860
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 17:21:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000268.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_46-50//hhsearch_pdb/000268hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 453.6 52.0 532 190-796 613-1207(1249)
2 1nr0_A Actin interacting prote 1.0 1 1 443.9 51.8 504 188-787 14-602 (611)
3 2ymu_A WD-40 repeat protein; u 1.0 1 1 428.4 57.7 207 234-455 7-233 (577)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 422.7 50.4 369 235-680 607-1022(1249)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 422.7 55.2 494 189-785 13-569 (577)
6 1nr0_A Actin interacting prote 1.0 1 1 419.2 48.9 462 241-793 16-519 (611)
7 3mkq_A Coatomer beta'-subunit; 1.0 1 1 393.4 49.1 433 233-783 3-486 (814)
8 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 382.0 43.5 532 190-793 15-658 (902)
9 1pgu_A Actin interacting prote 1.0 1 1 379.0 47.1 490 188-795 14-571 (615)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 377.6 45.1 447 239-795 13-604 (902)
No 1
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=453.61 Aligned_cols=532 Identities=18% Similarity=0.211 Sum_probs=387.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEE
Q ss_conf 66333223432123785210257861211101334676211232268998167987899999799999999818726999
Q 000268 190 MYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI 269 (1757)
Q Consensus 190 ~~~~~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~~~~~~~~~~~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkI 269 (1757)
.|.+.|.++.+.+.|. .+++++.......|...+.+.+.++.+|.+.|.+++|+|+|++||+|+.||.|+|
T Consensus 613 ~h~~~v~~~~~s~~~~---------~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQ---------RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 683 (1249)
T ss_dssp CCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCCCEEEEEECCCCC---------EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEE
T ss_conf 6666489999879999---------8999948894999998999788876067777899999269998999818995999
Q ss_pred EECCCCEEEEEEECCCCCEEEEEECC--CCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 92678708899806789859999957--9999999848966999978999705884177885599995279995079999
Q 000268 270 WSMETAYCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347 (1757)
Q Consensus 270 WDi~tg~~l~tL~gHs~~VtsIafSP--Dg~lLASgS~DGtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvS 347 (1757)
||+.+++++.++.+|...|.+++|+| ++.++++++.|+.|++||+.++.++..+.+|...|++++|+|++. +|++
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~s 760 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE---LLAS 760 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT---EEEE
T ss_pred EECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCCEEEEEEECCCC---EEEE
T ss_conf 8779993689995899737999984089965999980897099998999634220127779788999925999---8999
Q ss_pred EECCCCEEEEECCCCCCCCEEECCCCCCCC-----------CCCCC------------------------CCCCCCCCCC
Q ss_conf 928991999946789765525237999632-----------48888------------------------8888899999
Q 000268 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAV-----------AGRNM------------------------APSSSAGPQS 392 (1757)
Q Consensus 348 gs~DGtIrIWDl~tg~~~~~i~l~~~~~~~-----------~g~~~------------------------~~~~~~~~~~ 392 (1757)
++.||.|++||+.++.....+......... ..-.. ........+.
T Consensus 761 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~ 840 (1249)
T 3sfz_A 761 CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH 840 (1249)
T ss_dssp EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSS
T ss_pred EECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEECCCCC
T ss_conf 97898599996888865530202321024677644565017999997899889997589599999568972357747877
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64389998779988999508950999638999998999998402330377888007998267622333345688788887
Q 000268 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1757)
Q Consensus 393 ~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~ 472 (1757)
..+.+++|+|++.++++++.++.|++|++.+ ...+..+.+|...|.+++|+|++
T Consensus 841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~---------~~~~~~~~~h~~~v~~v~~spdg----------------- 894 (1249)
T 3sfz_A 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDS---------RLKVADCRGHLSWVHGVMFSPDG----------------- 894 (1249)
T ss_dssp SCCCEEEECSSTTEEEEECSSSCEEEEETTT---------TEEEEEECCCSSCEEEEEECTTS-----------------
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCC---------CCEEEECCCCCCCEEEEEECCCC-----------------
T ss_conf 7607999827888899994798699998678---------95653227876656899998999-----------------
Q ss_pred CCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCC---CC------CCCCCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf 5545555787089981899099992788888852222112---22------35699999999999999931104899971
Q 000268 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ---AY------HLKVPPPPMPPQPPRGGPRQRILPTPRGV 543 (1757)
Q Consensus 473 ~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~---~~------~l~~~~~~~~~~~~~~~~~~~l~~h~~~V 543 (1757)
..+++++.||.+++|++.+............ .+ ....... ....................+
T Consensus 895 ---------~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i 964 (1249)
T 3sfz_A 895 ---------SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNI-RGLQLIAGKTGQIDYLPEAQV 964 (1249)
T ss_dssp ---------SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESS-SSEEEEEESSCCEEEECCSCE
T ss_pred ---------CEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCC-CCEEEEECCCCEEEECCCCCE
T ss_conf ---------9899995897289887466520102113310368975998689981377-624898447650897256727
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf 29998579979999953983999988999458998079988499999039994999995899299996899922899860
Q 000268 544 NMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI 623 (1757)
Q Consensus 544 tsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~ 623 (1757)
.+++|+|+++++++|+.+|.|++|++.+++....+.+|...|.+++|+| ++.++++++.||.|++|++.++..+.. ..
T Consensus 965 ~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~~-~~ 1042 (1249)
T 3sfz_A 965 SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYVFL-QA 1042 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEECC-BC
T ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECC-CCCEEEEECCCCEEEEEECCCCCEEEE-EC
T ss_conf 8999958997799986999889997578723443036777168999989-999899986998799998799966898-52
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCC------CCCEEECCCCCCEEECCCCCEEECCCCCCCCCCC
Q ss_conf 6752579999479999999957970999998998311354------3211221798507881478633123211467688
Q 000268 624 SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDA------KYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRN 697 (1757)
Q Consensus 624 ~~~~ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~~~~~------~~~~~fs~D~r~Li~d~~g~vlD~~tql~p~l~~ 697 (1757)
+...+.++.|+|++. +++++.+|.|++|++.+++..... .....|++|++.++.......+
T Consensus 1043 ~~~~v~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v------------ 1109 (1249)
T 3sfz_A 1043 HQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA------------ 1109 (1249)
T ss_dssp CSSCEEEEEECSSSE-EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCC------------
T ss_pred CCCCEEEEEECCCCC-EEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCE------------
T ss_conf 787389999908995-8999788968998889886558874668848999998999989998499948------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEECCCCCCCCCC-----------CCCC
Q ss_conf 78756578988899952001010016633169878998499961899887368410698563237-----------8755
Q 000268 698 LQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID-----------PLPE 766 (1757)
Q Consensus 698 l~~~L~D~~~~p~p~~~q~l~~~r~~g~~~iafSPDG~~LAvg~d~s~~~~v~l~~l~~~~~li~-----------~lp~ 766 (1757)
.+||..... . ...+.++...+.+++|||||.+||++ +.++.+.+|++.++..+.. ....
T Consensus 1110 ---~iwd~~~~~---~-~~~l~~h~~~v~~~~~s~dg~~lat~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1179 (1249)
T 3sfz_A 1110 ---KIWSFDLLS---P-LHELKGHNGCVRCSAFSLDGILLATG---DDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGG 1179 (1249)
T ss_dssp ---CEECSSSSS---C-SBCCCCCSSCEEEEEECSSSSEEEEE---ETTSCCCEEESSSSCCCCCCCCCC-------CCS
T ss_pred ---EEEECCCCC---E-EEEECCCCCCEEEEEECCCCCEEEEE---ECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCC
T ss_conf ---998789850---0-12550687767999997999989998---2899799998899945788514444421025674
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 421135379987435799986555435774
Q 000268 767 FIDVMDWEPENEVQSDDNDSEYNVAEEYST 796 (1757)
Q Consensus 767 ~i~~i~~sPDg~~ls~~~~~~~~~~~~~~s 796 (1757)
.+..++|+||+..+.... +.+..|+..+
T Consensus 1180 ~v~~l~fs~dg~~l~s~~--g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1180 WVTDVCFSPDSKTLVSAG--GYLKWWNVAT 1207 (1249)
T ss_dssp CCCEEEECTTSSCEEEES--SSEEEBCSSS
T ss_pred EEEEEEECCCCCEEEECC--CEEEEEECCC
T ss_conf 289999978999899779--8599989888
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=443.87 Aligned_cols=504 Identities=15% Similarity=0.200 Sum_probs=372.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEE
Q ss_conf 98663332234321237852102578612111013346762112322689981679878999997999999998187269
Q 000268 188 PHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLV 267 (1757)
Q Consensus 188 p~~~~~~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~~~~~~~~~~~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtI 267 (1757)
|..+...+..+.+.+.|..++. +. ......|.....+.+.+|.||...|++++|+|+|++||+|+.|++|
T Consensus 14 ~~~~~g~~~~~~~spdg~~l~~---------~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v 83 (611)
T 1nr0_A 14 PRTARGTAVVLGNTPAGDKIQY---------CN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNV 83 (611)
T ss_dssp CCCCTTCCCCCEECTTSSEEEE---------EE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCCCCCEEEEEECCCCCEEEE---------CC-CCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCE
T ss_conf 9740682369766799997996---------79-9979994578724273765899865999999999689999489978
Q ss_pred EEEECCCC--EEEEEEECCCCCEEEEEECCCCCEEEEEECC----CEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCC
Q ss_conf 99926787--0889980678985999995799999998489----66999978999705884177885599995279995
Q 000268 268 KIWSMETA--YCLASCRGHEGDITDLAVSSNNALVASASND----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1757)
Q Consensus 268 kIWDi~tg--~~l~tL~gHs~~VtsIafSPDg~lLASgS~D----GtIrIWDl~tg~~i~~l~gH~~~VtsIafSPdg~~ 341 (1757)
+|||+.++ ....++.+|.+.|.+++|+|++++|++++.+ +.|++|+ .+..+..+.+|...|++++|+|++.
T Consensus 84 ~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~- 160 (611)
T 1nr0_A 84 RIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRP- 160 (611)
T ss_dssp EEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSS-
T ss_pred EEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CCCCCCEECCCCCCCEEEEECCCCC-
T ss_conf 9948989841566762255784489998999997999989977366999963--8997632547889836999889998-
Q ss_pred EEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECC
Q ss_conf 07999992899199994678976552523799963248888888889999964389998779988999508950999638
Q 000268 342 VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421 (1757)
Q Consensus 342 ~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi 421 (1757)
..|++++.|++|++||...+++...+ ..|...|.+++|+|+|.+|++++.|+.|++|++
T Consensus 161 -~~l~s~s~D~~v~lwd~~~~~~~~~l--------------------~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 161 -FRIISGSDDNTVAIFEGPPFKFKSTF--------------------GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp -CEEEEEETTSCEEEEETTTBEEEEEE--------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred -EEEEEEECCCEEEEEECCCCEEEEEE--------------------CCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
T ss_conf -29999928980999979997576652--------------------002571699999799998999989991999889
Q ss_pred CCCCCCCCCCCCCCEEEEC-------CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEE
Q ss_conf 9999989999984023303-------778880079982676223333456887888875545555787089981899099
Q 000268 422 CKPNTDDSDQPNHEIDVLS-------GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1757)
Q Consensus 422 ~t~~~~~s~~~~~~i~~l~-------gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~ 494 (1757)
.++. .+..+. +|...|.+++|+|++ ..|++++.|++|+
T Consensus 220 ~~g~---------~~~~~~~~~~~~~~h~~~V~~v~~spdg--------------------------~~l~s~s~D~~v~ 264 (611)
T 1nr0_A 220 VDGT---------KTGVFEDDSLKNVAHSGSVFGLTWSPDG--------------------------TKIASASADKTIK 264 (611)
T ss_dssp TTCC---------EEEECBCTTSSSCSSSSCEEEEEECTTS--------------------------SEEEEEETTSEEE
T ss_pred CCCC---------EEEEECCCCCCCCCCCCCEEEEEECCCC--------------------------CEEEEEECCCEEE
T ss_conf 9982---------8665136643235667878999997999--------------------------9999990898099
Q ss_pred EEECCCCCCCCCCCCCC----CCCCCCCCC----------CCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 99278888885222211----222356999----------9999999999993110489997129998579979999953
Q 000268 495 IWIPRSRRSHPKAARWT----QAYHLKVPP----------PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM 560 (1757)
Q Consensus 495 IWDl~t~k~~~~~~~w~----~~~~l~~~~----------~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LvSGs~ 560 (1757)
+||+.+++......... ....+.... .........+.....+.+|...|++++|+|+|++|++++.
T Consensus 265 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~ 344 (611)
T 1nr0_A 265 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA 344 (611)
T ss_dssp EEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEEC
T ss_conf 99688870134404788766406899973887999958996899968899744698378888899999189998999958
Q ss_pred CCEEEEEECCCCCEEEEE-ECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCE----------------------
Q ss_conf 983999988999458998-079988499999039994999995899299996899922----------------------
Q 000268 561 DCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP---------------------- 617 (1757)
Q Consensus 561 DG~I~IWDl~tgkli~tL-~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~---------------------- 617 (1757)
|+.|++||+.++.+...+ .+|...|.+++|++ ++. +++++.|+.+++|++..+.+
T Consensus 345 D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 422 (611)
T 1nr0_A 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 422 (611)
T ss_dssp TSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTT
T ss_pred CCCEEEEECCCCCEEEECCCCCCCEEEEEEECC-CCC-EEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECC
T ss_conf 984999978879256321667765078999878-996-999984896689546885435652120014899707998079
Q ss_pred -------------------EEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCC-------CCCCCCEEECC
Q ss_conf -------------------8998606752579999479999999957970999998998311-------35432112217
Q 000268 618 -------------------IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ-------KDAKYDQFFLG 671 (1757)
Q Consensus 618 -------------------i~~l~~~~~~ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~~-------~~~~~~~~fs~ 671 (1757)
+..+. +...+.+++|+|||++||+++.|+.|++|++..+... ........|++
T Consensus 423 g~~~~~~~~~~v~~~~~~~~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fsp 501 (611)
T 1nr0_A 423 GDIAVAACYKHIAIYSHGKLTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 501 (611)
T ss_dssp SSCEEEEESSEEEEEETTEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT
T ss_pred CCEEEEEECCEEEEEECCCEEEEE-CCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECC
T ss_conf 969999967639998489434640-6889549999289989999689973999994599222410157788607999989
Q ss_pred CCCCEEECCCCC---EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHCCCCCCCCEEECCCCCEEEEEECCCCCC
Q ss_conf 985078814786---331232114676887875657898889995200-1010016633169878998499961899887
Q 000268 672 DYRPLVQDTYGN---VLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQT-MYQQRRLGALGIEWRPSSLKLAVGPDFSLDQ 747 (1757)
Q Consensus 672 D~r~Li~d~~g~---vlD~~tql~p~l~~l~~~L~D~~~~p~p~~~q~-l~~~r~~g~~~iafSPDG~~LAvg~d~s~~~ 747 (1757)
|++.|+...... +++..... ...+. ++..|...+.+++|||||++||++ +.++
T Consensus 502 dg~~las~s~d~~v~~w~~~~~~--------------------~~~~~~~~~~H~~~V~~v~fspdg~~lasg---s~D~ 558 (611)
T 1nr0_A 502 NGAFLVATDQSRKVIPYSVANNF--------------------ELAHTNSWTFHTAKVACVSWSPDNVRLATG---SLDN 558 (611)
T ss_dssp TSSEEEEEETTSCEEEEEGGGTT--------------------EESCCCCCCCCSSCEEEEEECTTSSEEEEE---ETTS
T ss_pred CCCEEEEECCCCCEEEEECCCCC--------------------CEEEEEEEEECCCCEEEEEECCCCCEEEEE---ECCC
T ss_conf 99989999489989998857787--------------------223210264046642589989989979999---7997
Q ss_pred CEEEECCCCCCCCC----CCC-CCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 36841069856323----787-55421135379987435799986
Q 000268 748 GYQLQPLADLDVMI----DPL-PEFIDVMDWEPENEVQSDDNDSE 787 (1757)
Q Consensus 748 ~v~l~~l~~~~~li----~~l-p~~i~~i~~sPDg~~ls~~~~~~ 787 (1757)
.+++|++..+.... ... ...+..++|+||+. ++....++
T Consensus 559 ~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~ 602 (611)
T 1nr0_A 559 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDS 602 (611)
T ss_dssp CEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTS
T ss_pred CEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCE-EEEECCCC
T ss_conf 299997887555632644467656711899858997-99952887
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=428.40 Aligned_cols=207 Identities=26% Similarity=0.473 Sum_probs=135.4
Q ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 26899816798789999979999999981872699992678708899806789859999957999999984896699997
Q 000268 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1757)
Q Consensus 234 k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWD 313 (1757)
+..++|.||.+.|+|++|+|||++||+|+.|++|+|||. ++++++++.+|.+.|++++|+|++++||+++.|++|+|||
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 894398789985799999899899999938998999979-9978999968989989999989999999996989799998
Q ss_pred CCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCC---------CCCC-------
Q ss_conf 899970588417788559999527999507999992899199994678976552523799---------9632-------
Q 000268 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP---------SDAV------- 377 (1757)
Q Consensus 314 l~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~---------~~~~------- 377 (1757)
+ +++++..+.+|...|.+++|+|++. +|++++.|+.+++|+............... ....
T Consensus 86 ~-~~~~~~~~~~~~~~v~~~~~s~d~~---~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (577)
T 2ymu_A 86 R-NGQLLQTLTGHSSSVRGVAFSPDGQ---TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161 (577)
T ss_dssp T-TSCEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred C-CCCEEEEEECCCCCEEEEEECCCCC---EEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCC
T ss_conf 9-9978999978999889999989999---89998079833520235520011047777435554203776320025553
Q ss_pred ----CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECC
Q ss_conf ----4888888888999996438999877998899950895099963899999899999840233037788800799826
Q 000268 378 ----AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1757)
Q Consensus 378 ----~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSp 453 (1757)
.............+...+.+++|+|++.+|++++.|+.|++|+.. ...+..+.+|...|.+++|+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~----------~~~~~~~~~~~~~v~~~~~s~ 231 (577)
T 2ymu_A 162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----------GQLLQTLTGHSSSVRGVAFSP 231 (577)
T ss_dssp EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----------SCEEEEEECCSSCEEEEEECT
T ss_pred CEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECC----------CCEEEEEECCCCCEEEEEECC
T ss_conf 1000000000000026877635665416997789998599989999499----------968999946889889999979
Q ss_pred CC
Q ss_conf 76
Q 000268 454 CA 455 (1757)
Q Consensus 454 dg 455 (1757)
++
T Consensus 232 dg 233 (577)
T 2ymu_A 232 DG 233 (577)
T ss_dssp TS
T ss_pred CC
T ss_conf 99
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=422.66 Aligned_cols=369 Identities=18% Similarity=0.288 Sum_probs=245.2
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 68998167987899999799999999818726999926787088998067898599999579999999848966999978
Q 000268 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1757)
Q Consensus 235 ~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl 314 (1757)
....+.+|.+.|++++|+|+|++||+|+.||.|++|++.++..+.++.+|.+.|.+++|+|++++|++++.|+.|++||+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 22787166664899998799998999948894999998999788876067777899999269998999818995999877
Q ss_pred CCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99970588417788559999527999507999992899199994678976552523799963248888888889999964
Q 000268 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1757)
Q Consensus 315 ~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~ 394 (1757)
.+++.+..+.+|...|.+++|+|++.. ..+++++.||.|++||+.++.+...+. .|...
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~--------------------~h~~~ 745 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNH-LLLATGSNDFFLKLWDLNQKECRNTMF--------------------GHTNS 745 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSC-CEEEEEETTSCEEEEETTSSSEEEEEC--------------------CCSSC
T ss_pred CCCCEEEEECCCCCCEEEEEEECCCCC-EEEEEEECCCEEEEEECCCCCHHHEEC--------------------CCCCC
T ss_conf 999368999589973799998408996-599998089709999899963422012--------------------77797
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCC----CCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 389998779988999508950999638999998999998----4023303778880079982676223333456887888
Q 000268 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN----HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1757)
Q Consensus 395 V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~----~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~ 470 (1757)
|.+++|+|++.++++++.||.|++|++.++......... ............+.+++|+|++
T Consensus 746 v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--------------- 810 (1249)
T 3sfz_A 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG--------------- 810 (1249)
T ss_dssp EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS---------------
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCC---------------
T ss_conf 88999925999899997898599996888865530202321024677644565017999997899---------------
Q ss_pred CCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECC
Q ss_conf 87554555578708998189909999278888885222211222356999999999999999311048999712999857
Q 000268 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL 550 (1757)
Q Consensus 471 ~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSP 550 (1757)
..+++++ ++.+.+|++.++.. .......|...|.+++|+|
T Consensus 811 -----------~~l~~~~-~~~v~~~d~~~~~~----------------------------~~~~~~~~~~~v~~~~~sp 850 (1249)
T 3sfz_A 811 -----------DKIIVAA-KNKVLLFDIHTSGL----------------------------LAEIHTGHHSTIQYCDFSP 850 (1249)
T ss_dssp -----------SEEEEEE-TTEEEEEETTTCCE----------------------------EEEEECSSSSCCCEEEECS
T ss_pred -----------CEEEEEC-CCCEEEEEECCCCC----------------------------EEEECCCCCCCEEEEEECC
T ss_conf -----------8899975-89599999568972----------------------------3577478777607999827
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-------------
Q ss_conf 9979999953983999988999458998079988499999039994999995899299996899922-------------
Q 000268 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP------------- 617 (1757)
Q Consensus 551 DG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~------------- 617 (1757)
++.++++++.|+.|++|++.++..+..+.+|...|.+++|+| ++.++++++.|+.|++|++..+..
T Consensus 851 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 929 (1249)
T 3sfz_A 851 YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929 (1249)
T ss_dssp STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEE
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEE
T ss_conf 888899994798699998678956532278766568999989-9998999958972898874665201021133103689
Q ss_pred ----------------EEEE--------EECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCC------CCCCE
Q ss_conf ----------------8998--------60675257999947999999995797099999899831135------43211
Q 000268 618 ----------------IRIY--------EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKD------AKYDQ 667 (1757)
Q Consensus 618 ----------------i~~l--------~~~~~~ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~~~~------~~~~~ 667 (1757)
+..+ ......+.+++|+|+|+++++++.+|.|.+|++.+++.... .....
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l 1009 (1249)
T 3sfz_A 930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI 1009 (1249)
T ss_dssp EETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCE
T ss_pred ECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEE
T ss_conf 75998689981377624898447650897256727899995899779998699988999757872344303677716899
Q ss_pred EECCCCCCEEECC
Q ss_conf 2217985078814
Q 000268 668 FFLGDYRPLVQDT 680 (1757)
Q Consensus 668 ~fs~D~r~Li~d~ 680 (1757)
.|+++++.|+...
T Consensus 1010 ~~s~dg~~l~s~~ 1022 (1249)
T 3sfz_A 1010 QFTADGKTLISSS 1022 (1249)
T ss_dssp EECSSSSCEEEEC
T ss_pred EECCCCCEEEEEC
T ss_conf 9989999899986
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=422.66 Aligned_cols=494 Identities=21% Similarity=0.326 Sum_probs=339.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEE
Q ss_conf 86633322343212378521025786121110133467621123226899816798789999979999999981872699
Q 000268 189 HMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVK 268 (1757)
Q Consensus 189 ~~~~~~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~~~~~~~~~~~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIk 268 (1757)
.+|.+.|.++.+.+.|..++. ++.......|. ...+++++|.||.+.|++++|+|+|++||+++.|++|+
T Consensus 13 ~GH~~~V~~~a~spdg~~las---------~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~ 82 (577)
T 2ymu_A 13 EAHSSSVRGVAFSPDGQTIAS---------ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 82 (577)
T ss_dssp CCCSSCEEEEEECTTSSCEEE---------EETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCCCEEEEEECCCCCEEEE---------EECCCEEEEEE-CCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 789985799999899899999---------93899899997-99978999968989989999989999999996989799
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC------------------------------
Q ss_conf 99267870889980678985999995799999998489669999789997------------------------------
Q 000268 269 IWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL------------------------------ 318 (1757)
Q Consensus 269 IWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~------------------------------ 318 (1757)
|||. +++++.++.+|...|.+++|+|++++|++++.|+.+++|+.....
T Consensus 83 vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (577)
T 2ymu_A 83 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161 (577)
T ss_dssp EEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCC
T ss_conf 9989-997899997899988999998999989998079833520235520011047777435554203776320025553
Q ss_pred ----------CEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf ----------0588417788559999527999507999992899199994678976552523799963248888888889
Q 000268 319 ----------PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1757)
Q Consensus 319 ----------~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~ 388 (1757)
.......|...|.++.|+|++. +|++++.|+.|++|+.. +.....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~v~~w~~~-~~~~~~~-------------------- 217 (577)
T 2ymu_A 162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ---TIASASDDKTVKLWNRN-GQLLQTL-------------------- 217 (577)
T ss_dssp EEEEECTTSCEEEEEECCSSCEEEEEECTTSS---CEEEEETTSEEEEECTT-SCEEEEE--------------------
T ss_pred CEECCCCCEEEEEECCCCCCCEEEEEECCCCC---EEEEECCCCEEEEEECC-CCEEEEE--------------------
T ss_conf 10000000000000268776356654169977---89998599989999499-9689999--------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCC----CC
Q ss_conf 99996438999877998899950895099963899999899999840233037788800799826762233334----56
Q 000268 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL----AD 464 (1757)
Q Consensus 389 ~~~~~~V~sIafSpdG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~----~~ 464 (1757)
..|...|.+++|+|++.+|++++.|+.|++|+.. ...+..+.+|...|.+++|+|++....... ..
T Consensus 218 ~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~----------~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~ 287 (577)
T 2ymu_A 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----------GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVK 287 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT----------SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC----------CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 4688988999997999999999189989999599----------979999806889879999968999999995999799
Q ss_pred CCCCC----------CCCCCCCC-CCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88788----------88755455-55787089981899099992788888852222112223569999999999999993
Q 000268 465 SSKED----------STPKFKNS-WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1757)
Q Consensus 465 ~~~~~----------~~~~~~~~-~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~ 533 (1757)
.+... ........ ......+++++.||.|++|+... ...
T Consensus 288 ~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~------------------------------~~~ 337 (577)
T 2ymu_A 288 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG------------------------------QHL 337 (577)
T ss_dssp EEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS------------------------------CEE
T ss_pred EEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC------------------------------CEE
T ss_conf 99489958999706889769999999999999996999599996999------------------------------725
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 11048999712999857997999995398399998899945899807998849999903999499999589929999689
Q 000268 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1757)
Q Consensus 534 ~~l~~h~~~VtsIafSPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~ 613 (1757)
..+..|...+.+++|+|++++|++++.|+.|++|+. +++++..+.+|...|.+++|+| ++++|++++.|+.|++|+.
T Consensus 338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~- 414 (577)
T 2ymu_A 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR- 414 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEEEC-
T ss_conf 787478897799999899999999969998999908-9978998527889748999989-9999999949998999969-
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCC------CCCCCEEECCCCCCEEECCCCCEEEC
Q ss_conf 992289986067525799994799999999579709999989983113------54321122179850788147863312
Q 000268 614 EGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK------DAKYDQFFLGDYRPLVQDTYGNVLDQ 687 (1757)
Q Consensus 614 tg~~i~~l~~~~~~ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~~~------~~~~~~~fs~D~r~Li~d~~g~vlD~ 687 (1757)
+++.+..+..|...|++++|+||+++|++++.|+.|.+|+.. ++.+. .......|++|++.|+.......+.
T Consensus 415 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~- 492 (577)
T 2ymu_A 415 NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK- 492 (577)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEE-
T ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE-
T ss_conf 997898962889975799998999999999399989999799-988999727899778999969999999991989799-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEECCCCCCCCC--CCCC
Q ss_conf 32114676887875657898889995200101001663316987899849996189988736841069856323--7875
Q 000268 688 ETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMI--DPLP 765 (1757)
Q Consensus 688 ~tql~p~l~~l~~~L~D~~~~p~p~~~q~l~~~r~~g~~~iafSPDG~~LAvg~d~s~~~~v~l~~l~~~~~li--~~lp 765 (1757)
+|+..+ .....+.++...+.+++|||||++||++ +.++.+++|+. +++.+. ....
T Consensus 493 --------------iw~~~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~s~---~~dg~v~lwd~-~~~~~~~~~~h~ 549 (577)
T 2ymu_A 493 --------------LWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKTVKLWNR-NGQLLQTLTGHS 549 (577)
T ss_dssp --------------EEETTS-----CEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSEEEEECT-TSCEEEEEECCS
T ss_pred --------------EECCCC-----CEEEEEECCCCCEEEEEECCCCCEEEEE---ECCCEEEEEEC-CCCEEEEECCCC
T ss_conf --------------993999-----7899986799998999991899999999---89699999969-997898971888
Q ss_pred CCCCEEEECCCCCCCCCCCC
Q ss_conf 54211353799874357999
Q 000268 766 EFIDVMDWEPENEVQSDDND 785 (1757)
Q Consensus 766 ~~i~~i~~sPDg~~ls~~~~ 785 (1757)
..+..++|+||+..+.....
T Consensus 550 ~~v~~~~fs~dg~~l~s~~~ 569 (577)
T 2ymu_A 550 SSVWGVAFSPDGQTIASASS 569 (577)
T ss_dssp SCEEEEEECTTSSCEEEEET
T ss_pred CCEEEEEECCCCCEEEEEEC
T ss_conf 88789999689999999908
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=419.23 Aligned_cols=462 Identities=12% Similarity=0.090 Sum_probs=260.9
Q ss_pred CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC--
Q ss_conf 679878999997999999998187269999267870889980678985999995799999998489669999789997--
Q 000268 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL-- 318 (1757)
Q Consensus 241 GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~-- 318 (1757)
.+.+.+.+++|+|+|++||+++. +.|++|++.++.....+.+|...|++++|+|++++||+|+.|++|+|||+.++.
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~~-~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~ 94 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 94 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEET-TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCEEEEEECCCCCEEEECCC-CEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCE
T ss_conf 40682369766799997996799-97999457872427376589986599999999968999948997899489898415
Q ss_pred CEEEECCCCCCEEEEEECCCCCCEEEEEEEECC----CCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 058841778855999952799950799999289----9199994678976552523799963248888888889999964
Q 000268 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD----GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1757)
Q Consensus 319 ~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~D----GtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~ 394 (1757)
....+.+|.+.|.+++|+|++. .|++++.+ +.|++||. +..... ..+|...
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg~---~l~~~~~~~~~~~~v~~wd~--~~~~~~--------------------l~gh~~~ 149 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSESK---RIAAVGEGRERFGHVFLFDT--GTSNGN--------------------LTGQARA 149 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTSC---EEEEEECCSSCSEEEEETTT--CCBCBC--------------------CCCCSSC
T ss_pred EEEEECCCCCCEEEEEECCCCC---EEEEEECCCCCEEEEEEEEC--CCCCCE--------------------ECCCCCC
T ss_conf 6676225578448999899999---79999899773669999638--997632--------------------5478898
Q ss_pred EEEEEECCCCC-EEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 38999877998-89995089509996389999989999984023303778880079982676223333456887888875
Q 000268 395 IFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1757)
Q Consensus 395 V~sIafSpdG~-~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~ 473 (1757)
|.+++|+|++. .|++++.|+.|++|+... .+....+.+|...|.+++|+|++
T Consensus 150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~---------~~~~~~l~~H~~~V~~v~fspdg------------------ 202 (611)
T 1nr0_A 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPP---------FKFKSTFGEHTKFVHSVRYNPDG------------------ 202 (611)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTT---------BEEEEEECCCSSCEEEEEECTTS------------------
T ss_pred CEEEEECCCCCEEEEEEECCCEEEEEECCC---------CEEEEEECCCCCCEEEEEECCCC------------------
T ss_conf 369998899982999992898099997999---------75766520025716999997999------------------
Q ss_pred CCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCC
Q ss_conf 54555578708998189909999278888885222211222356999999999999999311048999712999857997
Q 000268 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1757)
Q Consensus 474 ~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~ 553 (1757)
..|++++.|++|++|++.+++...... .......+|...|.+++|+|+++
T Consensus 203 --------~~las~s~D~~i~lwd~~~g~~~~~~~----------------------~~~~~~~~h~~~V~~v~~spdg~ 252 (611)
T 1nr0_A 203 --------SLFASTGGDGTIVLYNGVDGTKTGVFE----------------------DDSLKNVAHSGSVFGLTWSPDGT 252 (611)
T ss_dssp --------SEEEEEETTSCEEEEETTTCCEEEECB----------------------CTTSSSCSSSSCEEEEEECTTSS
T ss_pred --------CEEEEEECCCCEEEEECCCCCEEEEEC----------------------CCCCCCCCCCCCEEEEEECCCCC
T ss_conf --------989999899919998899982866513----------------------66432356678789999979999
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECC---CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEE
Q ss_conf 9999953983999988999458998079---9884999990399949999958992999968999228998606752579
Q 000268 554 FVLAAIMDCRICVWNAADGSLVHSLTGH---TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD 630 (1757)
Q Consensus 554 ~LvSGs~DG~I~IWDl~tgkli~tL~gH---~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~Its 630 (1757)
+|++++.|+.|++||+.+++++..+..+ ...+..+.| ++..+++++.|+.|++|+...+.+...+.+|...|.+
T Consensus 253 ~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~ 329 (611)
T 1nr0_A 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW---TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITA 329 (611)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE---CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE---CCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEE
T ss_conf 9999908980999968887013440478876640689997---3887999958996899968899744698378888899
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCCCCCC-------CCCEEECCCCCCEEECCCCC--EEECCCCCCCCCCC----
Q ss_conf 999479999999957970999998998311354-------32112217985078814786--33123211467688----
Q 000268 631 GKFSPDGASIILSDDVGQLYILNTGQGESQKDA-------KYDQFFLGDYRPLVQDTYGN--VLDQETQLAPHRRN---- 697 (1757)
Q Consensus 631 lafSPDG~~LAsgs~DG~I~IWdl~sGe~~~~~-------~~~~~fs~D~r~Li~d~~g~--vlD~~tql~p~l~~---- 697 (1757)
++|+|||++|++++.|+.|++|++.+++..... .....|++++..+.....+. +++...........
T Consensus 330 l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~ 409 (611)
T 1nr0_A 330 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANK 409 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEE
T ss_pred EEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEE
T ss_conf 99918999899995898499997887925632166776507899987899699998489668954688543565212001
Q ss_pred C--CCCCCC--CCC-----------CCC-CCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEECCCCCCCC-
Q ss_conf 7--875657--898-----------889-99520010100166331698789984999618998873684106985632-
Q 000268 698 L--QDPLCD--SAM-----------IPY-PEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVM- 760 (1757)
Q Consensus 698 l--~~~L~D--~~~-----------~p~-p~~~q~l~~~r~~g~~~iafSPDG~~LAvg~d~s~~~~v~l~~l~~~~~l- 760 (1757)
+ .+.... .++ .-+ ......+ .+...+.+++|||||++||++ +.++.+++|++......
T Consensus 410 ~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~--~~~~~v~~va~spdg~~lasg---s~D~~v~lwd~~~~~~~~ 484 (611)
T 1nr0_A 410 LSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV--PISYNSSCVALSNDKQFVAVG---GQDSKVHVYKLSGASVSE 484 (611)
T ss_dssp CSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE--ECSSCEEEEEECTTSCEEEEE---ETTSEEEEEEEETTEEEE
T ss_pred CCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEE--ECCCCCEEEEEECCCCEEEEE---CCCCEEEEEECCCCCEEE
T ss_conf 489970799807996999996763999848943464--068895499992899899996---899739999945992224
Q ss_pred --CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf --378755421135379987435799986555435
Q 000268 761 --IDPLPEFIDVMDWEPENEVQSDDNDSEYNVAEE 793 (1757)
Q Consensus 761 --i~~lp~~i~~i~~sPDg~~ls~~~~~~~~~~~~ 793 (1757)
....+..+.+++|+||+..++....+..+..|+
T Consensus 485 ~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 485 VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EECCCCCCCEEEEEECCCCCEEEEECCCCCEEEEE
T ss_conf 10157788607999989999899994899899988
No 7
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=393.43 Aligned_cols=433 Identities=17% Similarity=0.217 Sum_probs=347.3
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 22689981679878999997999999998187269999267870889980678985999995799999998489669999
Q 000268 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1757)
Q Consensus 233 ~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIW 312 (1757)
++..++|.+|.+.|.|++|+|+|++||+|+.||.|+|||+.++..+..+.+|.+.|.+++|+|++.+|++++.||.|++|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred CCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEE
T ss_conf 65000450589856899988999989999479989999899991677873389968899996899989999289949999
Q ss_pred ECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78999705884177885599995279995079999928991999946789765525237999632488888888899999
Q 000268 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1757)
Q Consensus 313 Dl~tg~~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~ 392 (1757)
++.+++.+..+.+|...|++++|+|++. +|++++.||.|++|++.++....... ..|.
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~-------------------~~~~ 140 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---YVLSGSDDLTVKLWNWENNWALEQTF-------------------EGHE 140 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSS---EEEEEETTSEEEEEEGGGTSEEEEEE-------------------ECCS
T ss_pred ECCCCCEEEEEECCCCCEEEEEEECCCC---EEEEECCCCEEEEEECCCCCEEEEEE-------------------CCCC
T ss_conf 8999958799816899789999958999---89999289989999899995487998-------------------3799
Q ss_pred CCEEEEEECC-CCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEEC-CCCCCCEEEEECC--CCCCCCCCCCCCCCC
Q ss_conf 6438999877-99889995089509996389999989999984023303-7788800799826--762233334568878
Q 000268 393 HQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS-GHENDVNYVQFSG--CAVASRFSLADSSKE 468 (1757)
Q Consensus 393 ~~V~sIafSp-dG~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~-gH~~~V~sIafSp--dg~~s~~~~~~~~~~ 468 (1757)
..+.+++|+| ++..|++++.||.|++|++..+. ....+. .+...+.++.|+| ++
T Consensus 141 ~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~------------- 198 (814)
T 3mkq_A 141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST---------PNFTLTTGQERGVNYVDYYPLPDK------------- 198 (814)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS---------CSEEEECCCTTCCCEEEECCSTTC-------------
T ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCC---------CEEEEECCCCCCEEEEEEEECCCC-------------
T ss_conf 8688999976999999999488949999899996---------106983588897799999977999-------------
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEE
Q ss_conf 88875545555787089981899099992788888852222112223569999999999999993110489997129998
Q 000268 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1757)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 548 (1757)
..+++++.||.|++|++.++ .....+..|...|.+++|
T Consensus 199 -------------~~l~~~~~dg~i~~~d~~~~-----------------------------~~~~~~~~~~~~v~~~~~ 236 (814)
T 3mkq_A 199 -------------PYMITASDDLTIKIWDYQTK-----------------------------SCVATLEGHMSNVSFAVF 236 (814)
T ss_dssp -------------CEEEEECTTSEEEEEETTTT-----------------------------EEEEEEECCSSCEEEEEE
T ss_pred -------------CEEEEEECCCEEEEEECCCC-----------------------------CEEEEECCCCCCEEEEEE
T ss_conf -------------89999938997999999999-----------------------------188998478888789998
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE-------
Q ss_conf 5799799999539839999889994589980799884999990399949999958992999968999228998-------
Q 000268 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY------- 621 (1757)
Q Consensus 549 SPDG~~LvSGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l------- 621 (1757)
+|++.+|++++.||.|++|++.+++.+..+..|...+.+++|+|++..++++++.++.+.+|++..+.....+
T Consensus 237 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 316 (814)
T 3mkq_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLV 316 (814)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEE
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCEEEEECCCCCCEEEECCCCCEE
T ss_conf 59999999990899699998999947778406888679999924999509999907987999767997416777998789
Q ss_pred ------------------------------------EECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCC-CCC
Q ss_conf ------------------------------------6067525799994799999999579709999989983113-543
Q 000268 622 ------------------------------------EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK-DAK 664 (1757)
Q Consensus 622 ------------------------------------~~~~~~ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~~~-~~~ 664 (1757)
..+...+.+++|+|+|++|++++ +|.+.+|++....... ...
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~~~~i 395 (814)
T 3mkq_A 317 WSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKAFGKC 395 (814)
T ss_dssp EECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEC-CCEEEEEECCCCCCCCCCCE
T ss_conf 97763664112466530465555567620146511788765774068999999899942-98899998745445679954
Q ss_pred CCEEECCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCC---CEEEEEE
Q ss_conf 2112217985078814786331232114676887875657898889995200101001663316987899---8499961
Q 000268 665 YDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSS---LKLAVGP 741 (1757)
Q Consensus 665 ~~~~fs~D~r~Li~d~~g~vlD~~tql~p~l~~l~~~L~D~~~~p~p~~~q~l~~~r~~g~~~iafSPDG---~~LAvg~ 741 (1757)
....|++|+..++.......+. +++ .+.++...+..++|+||| .+|+++
T Consensus 396 ~~~~~spdg~~la~~~~~g~v~---------------l~~------------~~~~~~~~v~~~~~s~dg~~~~~l~~~- 447 (814)
T 3mkq_A 396 QDFVWGPDSNSYALIDETGQIK---------------YYK------------NFKEVTSWSVPMHSAIDRLFSGALLGV- 447 (814)
T ss_dssp SEEEECTTSSCEEEECTTCCEE---------------EEE------------TTEECTTCCCCCSSCCCEEECSSSEEE-
T ss_pred EEEEEECCCCEEEEEECCCCEE---------------EEE------------CCCCCCCEEECCCCCCCCEECCEEEEE-
T ss_conf 7999947998599996898399---------------997------------777752439737867552365469999-
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 899887368410698563237875542113537998743579
Q 000268 742 DFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDD 783 (1757)
Q Consensus 742 d~s~~~~v~l~~l~~~~~li~~lp~~i~~i~~sPDg~~ls~~ 783 (1757)
+.+..+.+|++.++..+ ..+......+.|+|||..++..
T Consensus 448 --~~d~~v~~~d~~~~~~~-~~~~~~~~~v~~s~dg~~la~~ 486 (814)
T 3mkq_A 448 --KSDGFVYFFDWDNGTLV-RRIDVNAKDVIWSDNGELVMIV 486 (814)
T ss_dssp --EETTEEEEECTTTCCEE-EEESSCEEEEEECTTSSEEEEE
T ss_pred --ECCCEEEEEECCCCCEE-EEEECCCCEEEECCCCCEEEEE
T ss_conf --66998999998769599-9973588879996999999999
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=382.00 Aligned_cols=532 Identities=10% Similarity=0.067 Sum_probs=245.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEE
Q ss_conf 66333223432123785210257861211101334676211232268998167987899999799999999818726999
Q 000268 190 MYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI 269 (1757)
Q Consensus 190 ~~~~~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~~~~~~~~~~~k~i~tL~GH~~~V~sIaFSPDG~~LATGS~DGtIkI 269 (1757)
.|...|.++.+.+.|..+ +++.....+..|.....+.+..+ .|...|.+++|+| |++|++++.|++|+|
T Consensus 15 gh~~~V~~lafspdg~~l---------Asgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLL---------AIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYV 83 (902)
T ss_dssp ECSSCEEEEEEETTTTEE---------EEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEE
T ss_pred CCCCCCEEEEECCCCCEE---------EEEECCCEEEEEECCCCEEEEEC-CCCCCEEEEEECC-CCEEEEEECCCEEEE
T ss_conf 889984899997999989---------99929798999968994799986-8999779999908-988999989595999
Q ss_pred EECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCE-----------EEECCCCCCEEEEEECCC
Q ss_conf 926787088998067898599999579999999848966999978999705-----------884177885599995279
Q 000268 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI-----------SVLRGHTAAVTAIAFSPR 338 (1757)
Q Consensus 270 WDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~~i-----------~~l~gH~~~VtsIafSPd 338 (1757)
||+.+++++.++. |.+.|++++|+|++.+|++|+.||.|++||+.++... ..+.+|.+.|++++|+|+
T Consensus 84 Wd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 84 LSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp EETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred EECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 9899996899974-899879999879999899994999299999999962650304321000254457897389997669
Q ss_pred CCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 99507999992899199994678976552523799963248888888889999964389998779988999508950999
Q 000268 339 PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418 (1757)
Q Consensus 339 g~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sIafSpdG~~LasGs~DG~IrI 418 (1757)
+. ..|++++.||.| +||++++.....+....+.....+... ......|...|.+++|+|+|.+|++++.|+.|++
T Consensus 163 ~~--~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DI--GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFS--EKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EE--EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTC--CCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CC--CEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCC--CCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEE
T ss_conf 99--989999189849-998778965799833557767776544--3323456777689998599999999989993999
Q ss_pred ECCCCCCCCCCCCCCCCEEEEC-------------CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 6389999989999984023303-------------778880079982676223333456887888875545555787089
Q 000268 419 WNACKPNTDDSDQPNHEIDVLS-------------GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 485 (1757)
Q Consensus 419 WDi~t~~~~~s~~~~~~i~~l~-------------gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~~~~Lv 485 (1757)
||+.++..... +.+.... .|...|.+++|++..... ....++
T Consensus 238 Wd~~~g~~~~~----r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd---------------------~~~ll~ 292 (902)
T 2oaj_A 238 WDANSGHMIMA----RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE---------------------YTSLLI 292 (902)
T ss_dssp EETTTCCEEEE----ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTT---------------------EEEEEE
T ss_pred EECCCCCEEEE----EEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC---------------------CCEEEE
T ss_conf 98789968888----85012345787776788885556774579997349998---------------------878999
Q ss_pred EECCC-----CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC--CCCCCEEEEEECC--------
Q ss_conf 98189-----90999927888888522221122235699999999999999931104--8999712999857--------
Q 000268 486 TCSRD-----GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL--PTPRGVNMIVWSL-------- 550 (1757)
Q Consensus 486 SgS~D-----GtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~--~h~~~VtsIafSP-------- 550 (1757)
+|+.+ ..+.+|++...... ....|.....+ . ......+.. .+...|..+++.+
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~-~~~s~~~~~~~-~----------~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g 360 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRY-SITSYEGMKNY-Y----------ANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG 360 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCG-GGCCHHHHHHH-H----------HSCSEEEEECCSSSSCEEEEEECCSSCSHHHH
T ss_pred ECCCCCCCCCCEEEEEECCCCCCC-CCCCHHHHHHH-H----------CCCCCEEEEECCCCCCEEEEEECCCCCCCCCC
T ss_conf 688777788852899954789875-55425565466-4----------17452278741899954799997788988677
Q ss_pred --CCCEEEEEECCCEEEEEECCCCCEEEE-----------------------------------------EECCCCCEEE
Q ss_conf --997999995398399998899945899-----------------------------------------8079988499
Q 000268 551 --DNRFVLAAIMDCRICVWNAADGSLVHS-----------------------------------------LTGHTESTYV 587 (1757)
Q Consensus 551 --DG~~LvSGs~DG~I~IWDl~tgkli~t-----------------------------------------L~gH~~~Vts 587 (1757)
+...+++++.|+.|++|++.++..... +.+|...+..
T Consensus 361 ~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~s 440 (902)
T 2oaj_A 361 CHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQ 440 (902)
T ss_dssp TBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCC
T ss_pred CCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 87850699991798489997899985565556898522358972489999749999988886046999754578577875
Q ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCCEE--EEEE---------ECCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 9990399949999958992999968999228--9986---------0675257999947999999995797099999899
Q 000268 588 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI--RIYE---------ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1757)
Q Consensus 588 IafSPdd~~lLaSgs~DG~IrIWDi~tg~~i--~~l~---------~~~~~ItslafSPDG~~LAsgs~DG~I~IWdl~s 656 (1757)
++|+| +++++++|+.|++|++||+.++... ..+. .|...|.+++|+|||++||+++.||.|++|++.+
T Consensus 441 v~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~ 519 (902)
T 2oaj_A 441 KLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEV 519 (902)
T ss_dssp CCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEE
T ss_pred CCCCC-CCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECC
T ss_conf 33366-67589996589838999787764567736775015413778887646999638999699994585799999248
Q ss_pred CCCCCCCCCCE--EECCCCCCE-EECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCC
Q ss_conf 83113543211--221798507-881478633123211467688787565789888999520010100166331698789
Q 000268 657 GESQKDAKYDQ--FFLGDYRPL-VQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPS 733 (1757)
Q Consensus 657 Ge~~~~~~~~~--~fs~D~r~L-i~d~~g~vlD~~tql~p~l~~l~~~L~D~~~~p~p~~~q~l~~~r~~g~~~iafSPD 733 (1757)
++.......+. ....++... +........+......+ ..+........+.++...+.+++||||
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~l~~h~~~V~svafSpd 586 (902)
T 2oaj_A 520 NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPT-------------GVRQGFMPSTAVHANKGKTSAINNSNI 586 (902)
T ss_dssp CCC---------------CCSCCGGGSSCSEEECGGGCCT-------------TCSEEEEEEEEECCCSCSEEEEEECBT
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC-------------CCCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 6555754557786651134551346796543224236898-------------877760146999868886779996487
Q ss_pred CCEEEEEECCCCCCCEEEECCCCCCCCC----C----CCCCCCCEEEEC-----CCC---CCCCCCCCCCCCCCCC
Q ss_conf 9849996189988736841069856323----7----875542113537-----998---7435799986555435
Q 000268 734 SLKLAVGPDFSLDQGYQLQPLADLDVMI----D----PLPEFIDVMDWE-----PEN---EVQSDDNDSEYNVAEE 793 (1757)
Q Consensus 734 G~~LAvg~d~s~~~~v~l~~l~~~~~li----~----~lp~~i~~i~~s-----PDg---~~ls~~~~~~~~~~~~ 793 (1757)
| +||+| +.++.+++|++.++..+. . .....+.+++|+ ||| ..+.....++-+..|+
T Consensus 587 G-~lAsg---s~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 587 G-FVGIA---YAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp S-EEEEE---ETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred C-EEEEE---ECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEE
T ss_conf 6-89999---589769999888983999702467264666613999999984178987633899995687399999
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=378.97 Aligned_cols=490 Identities=13% Similarity=0.172 Sum_probs=362.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC----EEEEEECCCCCC-EEEEEECC--CCCEEEE
Q ss_conf 9866333223432123785210257861211101334676211232----268998167987-89999979--9999999
Q 000268 188 PHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKM----QNIKRVRGHRNA-VYCAIFDR--SGRYVIT 260 (1757)
Q Consensus 188 p~~~~~~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~~~~~~~~~~~----k~i~tL~GH~~~-V~sIaFSP--DG~~LAT 260 (1757)
|..+...+..+.+.+.|..++.. + ......|...+. +.+..+.+|... |++++|+| ++++||+
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~---------~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s 83 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYP---------C-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS 83 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEE---------E-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEE---------C-CCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCEEEE
T ss_conf 87765853689988999979993---------5-9849999777887765143188057884499999796789988999
Q ss_pred ECCCCEEEEEECCCC--------EEEEEEECCCCCEEEEEECCCCCEEEEEECC----CEEEEEECCCCCCEEEECCCCC
Q ss_conf 818726999926787--------0889980678985999995799999998489----6699997899970588417788
Q 000268 261 GSDDRLVKIWSMETA--------YCLASCRGHEGDITDLAVSSNNALVASASND----CIIRVWRLPDGLPISVLRGHTA 328 (1757)
Q Consensus 261 GS~DGtIkIWDi~tg--------~~l~tL~gHs~~VtsIafSPDg~lLASgS~D----GtIrIWDl~tg~~i~~l~gH~~ 328 (1757)
|+.||.|++|++.++ ..+..+..|...|.+++|+|++++|++++.+ +.|++|+ .+..+..+.+|..
T Consensus 84 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~ 161 (615)
T 1pgu_A 84 GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQ 161 (615)
T ss_dssp EETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSS
T ss_pred ECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEE--CCCCCEEEECCCC
T ss_conf 64898799976888765544554200011125663799999079998999316877755799997--8981031306774
Q ss_pred CEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC---CEEEEEECCC-C
Q ss_conf 55999952799950799999289919999467897655252379996324888888888999996---4389998779-9
Q 000268 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH---QIFCCAFNAN-G 404 (1757)
Q Consensus 329 ~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~---~V~sIafSpd-G 404 (1757)
.|++++|+|++. ..+++++.|+.|++||+.+++....+. .|.. .|.+++|+|+ +
T Consensus 162 ~v~~~~~~~~~~--~~l~~~~~d~~v~vwd~~~~~~~~~~~--------------------~~~~~~~~v~~~~~~~~~~ 219 (615)
T 1pgu_A 162 RINACHLKQSRP--MRSMTVGDDGSVVFYQGPPFKFSASDR--------------------THHKQGSFVRDVEFSPDSG 219 (615)
T ss_dssp CEEEEEECSSSS--CEEEEEETTTEEEEEETTTBEEEEEEC--------------------SSSCTTCCEEEEEECSTTC
T ss_pred CEEEEEECCCCC--CEEEEEECCCCEEEEECCCCCEEEEEC--------------------CCCCCCCEEEEEEECCCCC
T ss_conf 388999887899--689999579959999699961013202--------------------5677774289999789778
Q ss_pred CEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEE-C---CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999508950999638999998999998402330-3---7788800799826762233334568878888755455557
Q 000268 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL-S---GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480 (1757)
Q Consensus 405 ~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l-~---gH~~~V~sIafSpdg~~s~~~~~~~~~~~~~~~~~~~~~~ 480 (1757)
.+|++++.|+.|++|++.+ ...+..+ . .|...|.++.|+ ++
T Consensus 220 ~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~~~v~~~~~~-~~------------------------- 264 (615)
T 1pgu_A 220 EFVITVGSDRKISCFDGKS---------GEFLKYIEDDQEPVQGGIFALSWL-DS------------------------- 264 (615)
T ss_dssp CEEEEEETTCCEEEEETTT---------CCEEEECCBTTBCCCSCEEEEEES-SS-------------------------
T ss_pred CEEEEEECCCEEEEEECCC---------CCEEEEECCCCCCCCCCEEEEEEC-CC-------------------------
T ss_conf 8899986898089998999---------978589525444567755899981-89-------------------------
Q ss_pred CCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC----CCCCEEEEEECCCCCEEE
Q ss_conf 8708998189909999278888885222211222356999999999999999311048----999712999857997999
Q 000268 481 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP----TPRGVNMIVWSLDNRFVL 556 (1757)
Q Consensus 481 ~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~----h~~~VtsIafSPDG~~Lv 556 (1757)
..+++++.||.|++||+.+++.. ..+.. ....+.++.|+ ++.+++
T Consensus 265 -~~l~~~~~d~~i~~wd~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~-~~~~l~ 313 (615)
T 1pgu_A 265 -QKFATVGADATIRVWDVTTSKCV-----------------------------QKWTLDKQQLGNQQVGVVAT-GNGRII 313 (615)
T ss_dssp -SEEEEEETTSEEEEEETTTTEEE-----------------------------EEEECCTTCGGGCEEEEEEE-ETTEEE
T ss_pred -CEEEEECCCCCEEEEECCCCCEE-----------------------------EEECCCCCCCCCCEEEEEEC-CCCEEE
T ss_conf -97999848994899978889278-----------------------------78847877545714699918-997699
Q ss_pred EEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCC
Q ss_conf 99539839999889994589980799884999990399949999958992999968999228998606752579999479
Q 000268 557 AAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD 636 (1757)
Q Consensus 557 SGs~DG~I~IWDl~tgkli~tL~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDi~tg~~i~~l~~~~~~ItslafSPD 636 (1757)
+++.|+.|++|++.+++++..+.+|...|.+++| | + +++++.||.|++|++. .+. ..|...|.+++| ++
T Consensus 314 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~-~---l~~~~~dg~i~~w~~~---~~~--~~~~~~v~~~~~-~~ 382 (615)
T 1pgu_A 314 SLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-N-P---LISGSYDGRIMEWSSS---SMH--QDHSNLIVSLDN-SK 382 (615)
T ss_dssp EEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-T-T---TEEEETTSCEEETTTT---EEE--CCCCSCEEEEEC-CS
T ss_pred EEECCCCEEEEECCCCCEEEEEECCCCCEEEEEE-C-C---CEEECCCCEEEEEECH---HHC--CCCCCCEEEEEE-CC
T ss_conf 9978997899988899288999477787899995-6-7---4898799959998752---415--755685179997-89
Q ss_pred CCEEEEEECCCEEEEEECCCCCCCCCCCCCEEECCCCCCEEECCCCCE--EECCCCC---------------------CC
Q ss_conf 999999957970999998998311354321122179850788147863--3123211---------------------46
Q 000268 637 GASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNV--LDQETQL---------------------AP 693 (1757)
Q Consensus 637 G~~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~fs~D~r~Li~d~~g~v--lD~~tql---------------------~p 693 (1757)
+.+|++++.+|.|.+|++..++... .+....|++++..++....+.+ ++..... ..
T Consensus 383 ~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 461 (615)
T 1pgu_A 383 AQEYSSISWDDTLKVNGITKHEFGS-QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV 461 (615)
T ss_dssp TTCCEEEETTTEEEETTEEEEECSS-CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE
T ss_pred CCEEEEEECCCCEEEEECCCCCCCC-CCEEEEECCCCCEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEECCCEEEE
T ss_conf 8679999589979998866676367-846999828987899967982699944678665551567872077883888999
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEECCCCCCCCCC--C-CCCCCC
Q ss_conf 768-878756578988899952001010016633169878998499961899887368410698563237--8-755421
Q 000268 694 HRR-NLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID--P-LPEFID 769 (1757)
Q Consensus 694 ~l~-~l~~~L~D~~~~p~p~~~q~l~~~r~~g~~~iafSPDG~~LAvg~d~s~~~~v~l~~l~~~~~li~--~-lp~~i~ 769 (1757)
... .....+||........ ..+..+...+..++|+|+|++||++ +.++.+.+|++..++.+.. . ....+.
T Consensus 462 ~~~~d~~i~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~---~~dg~i~iw~~~~~~~~~~~~~~h~~~v~ 535 (615)
T 1pgu_A 462 GLEEGNTIQVFKLSDLEVSF---DLKTPLRAKPSYISISPSETYIAAG---DVMGKILLYDLQSREVKTSRWAFRTSKIN 535 (615)
T ss_dssp EETTTSCEEEEETTEEEEEE---ECSSCCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred EECCCCEEEEEECCCCCCCC---CCCCCCCCCEEEEEECCCCCEEEEC---CCCCEEEEEECCCCCCEEEEECCCCCCEE
T ss_conf 65689869999888854353---3367765750799998999989981---79985998657777624676047887146
Q ss_pred EEEECC----------CCCCCCCCCCCCCCCCCCCC
Q ss_conf 135379----------98743579998655543577
Q 000268 770 VMDWEP----------ENEVQSDDNDSEYNVAEEYS 795 (1757)
Q Consensus 770 ~i~~sP----------Dg~~ls~~~~~~~~~~~~~~ 795 (1757)
.++|+| ++..++....++.+..|+..
T Consensus 536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 571 (615)
T 1pgu_A 536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571 (615)
T ss_dssp EEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred EEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECC
T ss_conf 999768323453324688889998179719999778
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=377.60 Aligned_cols=447 Identities=11% Similarity=0.092 Sum_probs=250.7
Q ss_pred ECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 81679878999997999999998187269999267870889980678985999995799999998489669999789997
Q 000268 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1757)
Q Consensus 239 L~GH~~~V~sIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gHs~~VtsIafSPDg~lLASgS~DGtIrIWDl~tg~ 318 (1757)
..||...|+|++|+|++++||+|+.||+|+||+..++.....+. |...|.+++|+| +++|++++.|++|++||+.+++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred CCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECC-CCCCEEEEEECC-CCEEEEEECCCEEEEEECCCCC
T ss_conf 16889984899997999989999297989999689947999868-999779999908-9889999895959999899996
Q ss_pred CEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 05884177885599995279995079999928991999946789765525237999632488888888899999643899
Q 000268 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1757)
Q Consensus 319 ~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~~~~i~l~~~~~~~~g~~~~~~~~~~~~~~~V~sI 398 (1757)
++..+. |...|++++|+|++. +|++++.||.|++||+.++.+. .+..+..... ......|...|.++
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g~---~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~--------~~~~~~h~~~V~sl 157 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASLD---WMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKS--------SFFPAARLSPIVSI 157 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTCS---EEEEEETTSCEEEEETTTTEEE-EEEECCHHHH--------HTCSSSCCCCCCEE
T ss_pred EEEEEC-CCCCEEEEEECCCCC---EEEEECCCCCEEEEECCCCCCC-CCEECCCCCC--------CCCCCCCCCCEEEE
T ss_conf 899974-899879999879999---8999949992999999999626-5030432100--------02544578973899
Q ss_pred EECCC-CCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECC------------------CCCCCEEEEECCCCCCCC
Q ss_conf 98779-98899950895099963899999899999840233037------------------788800799826762233
Q 000268 399 AFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG------------------HENDVNYVQFSGCAVASR 459 (1757)
Q Consensus 399 afSpd-G~~LasGs~DG~IrIWDi~t~~~~~s~~~~~~i~~l~g------------------H~~~V~sIafSpdg~~s~ 459 (1757)
+|+|+ +..+++|+.|+.| +||++++. .+..+.+ |...|.+++|+|++
T Consensus 158 ~~sp~~~~~l~~g~~dg~v-lWd~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg---- 223 (902)
T 2oaj_A 158 QWNPRDIGTVLISYEYVTL-TYSLVENE---------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS---- 223 (902)
T ss_dssp EEETTEEEEEEEECSSCEE-EEETTTTE---------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS----
T ss_pred EECCCCCCEEEEEECCCCE-EEECCCCC---------EEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC----
T ss_conf 9766999989999189849-99877896---------579983355776777654433234567776899985999----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 33456887888875545555787089981899099992788888852222112223569999999999999993110489
Q 000268 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1757)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtI~IWDl~t~k~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1757)
..|++++.||.|++||+.+++...... .......... ... ......+
T Consensus 224 ----------------------~~lasgs~Dg~i~lWd~~~g~~~~~r~----l~~~~~~~~~------~~~-~~~~~~~ 270 (902)
T 2oaj_A 224 ----------------------LHIITIHEDNSLVFWDANSGHMIMART----VFETEINVPQ------PDY-IRDSSTN 270 (902)
T ss_dssp ----------------------SEEEEEETTCCEEEEETTTCCEEEEEC----SSCSCTTSCC------TTC-CCCCSSC
T ss_pred ----------------------CEEEEEECCCEEEEEECCCCCEEEEEE----ECCCCCCCCC------CCC-CCCCCCC
T ss_conf ----------------------999999899939999878996888885----0123457877------767-8888555
Q ss_pred CCCEEEEEEC----CCC-CEEEEEECC-----CEEEEEECC------------------CCCEEEEEE-CCCCCEEEEEE
Q ss_conf 9971299985----799-799999539-----839999889------------------994589980-79988499999
Q 000268 540 PRGVNMIVWS----LDN-RFVLAAIMD-----CRICVWNAA------------------DGSLVHSLT-GHTESTYVLDV 590 (1757)
Q Consensus 540 ~~~VtsIafS----PDG-~~LvSGs~D-----G~I~IWDl~------------------tgkli~tL~-gH~~~VtsIaf 590 (1757)
...|++++|+ |++ .+|++|+.+ ..+.+|++. +++....+. .+.+.|..+.+
T Consensus 271 ~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 350 (902)
T 2oaj_A 271 AAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILP 350 (902)
T ss_dssp CCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEE
T ss_pred CCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEEEEE
T ss_conf 67745799973499988789996887777888528999547898755542556546641745227874189995479999
Q ss_pred EC---------CCCCEEEEEECCCCEEEEECCCCCEEEE-----------------------------------------
Q ss_conf 03---------9994999995899299996899922899-----------------------------------------
Q 000268 591 HP---------FNPRIAMSAGYDGKTIVWDIWEGIPIRI----------------------------------------- 620 (1757)
Q Consensus 591 SP---------dd~~lLaSgs~DG~IrIWDi~tg~~i~~----------------------------------------- 620 (1757)
.+ .++..+++++.|+.|++|++.++.....
T Consensus 351 ~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~ 430 (902)
T 2oaj_A 351 IPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYL 430 (902)
T ss_dssp CCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCS
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCC
T ss_conf 77889886778785069999179848999789998556555689852235897248999974999998888604699975
Q ss_pred EEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEEECCCCCCEEECCCCCEEECCCCCCCCCCCCCC
Q ss_conf 86067525799994799999999579709999989983113543211221798507881478633123211467688787
Q 000268 621 YEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQD 700 (1757)
Q Consensus 621 l~~~~~~ItslafSPDG~~LAsgs~DG~I~IWdl~sGe~~~~~~~~~~fs~D~r~Li~d~~g~vlD~~tql~p~l~~l~~ 700 (1757)
+.+|...+..++|+|||++||+++.|+.|++|++.+++...... +..+ +.
T Consensus 431 l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~-----------~~~~-----------l~-------- 480 (902)
T 2oaj_A 431 LKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS-----------FEVN-----------LS-------- 480 (902)
T ss_dssp CCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC-----------EEEE-----------HH--------
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCE-----------EEEE-----------CH--------
T ss_conf 45785778753336667589996589838999787764567736-----------7750-----------15--------
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEECCCCCCC---------------------
Q ss_conf 56578988899952001010016633169878998499961899887368410698563---------------------
Q 000268 701 PLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDV--------------------- 759 (1757)
Q Consensus 701 ~L~D~~~~p~p~~~q~l~~~r~~g~~~iafSPDG~~LAvg~d~s~~~~v~l~~l~~~~~--------------------- 759 (1757)
..+..++...+.+++|||||++||++ +.++.+++|++.+...
T Consensus 481 --------------~~~~~~h~~~V~svafspdg~~LAsg---s~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (902)
T 2oaj_A 481 --------------RTLNKAKELAVDKISFAAETLELAVS---IETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSL 543 (902)
T ss_dssp --------------HHTTCSSSCCEEEEEEETTTTEEEEE---ETTSCEEEEEEEECCC---------------CCSCCG
T ss_pred --------------HHCCCCCCCCEEEEEECCCCCEEEEE---ECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf --------------41377888764699963899969999---4585799999248655575455778665113455134
Q ss_pred --------------------------CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------------------------237875542113537998743579998655543577
Q 000268 760 --------------------------MIDPLPEFIDVMDWEPENEVQSDDNDSEYNVAEEYS 795 (1757)
Q Consensus 760 --------------------------li~~lp~~i~~i~~sPDg~~ls~~~~~~~~~~~~~~ 795 (1757)
......+.+.+|+|+||| .++....++.+..|+.+
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~ 604 (902)
T 2oaj_A 544 NNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR 604 (902)
T ss_dssp GGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC-EEEEEECCCCEEEEECC
T ss_conf 67965432242368988777601469998688867799964876-89999589769999888
Done!