Query 000270
Match_columns 1749
No_of_seqs 1243 out of 5015
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 18:36:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000270.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_46-50//hhsearch_pdb/000270hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 1.0 1 1 407.1 45.7 493 190-773 16-597 (611)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 400.7 50.3 509 190-770 613-1191(1249)
3 1nr0_A Actin interacting prote 1.0 1 1 377.7 44.6 374 234-649 138-568 (611)
4 2ymu_A WD-40 repeat protein; u 1.0 1 1 377.6 48.2 363 234-671 7-403 (577)
5 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 375.6 48.2 303 235-614 607-913 (1249)
6 2ymu_A WD-40 repeat protein; u 1.0 1 1 372.2 51.0 407 189-670 13-484 (577)
7 1vyh_C Platelet-activating fac 1.0 1 1 365.5 38.2 310 236-613 101-410 (410)
8 3mkq_A Coatomer beta'-subunit; 1.0 1 1 354.2 47.6 315 233-638 3-322 (814)
9 3iz6_a 40S ribosomal protein R 1.0 1 1 347.9 35.2 312 232-617 55-378 (380)
10 1got_B GT-beta; complex (GTP-b 1.0 1 1 344.2 44.0 292 233-611 45-340 (340)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=407.08 Aligned_cols=493 Identities=15% Similarity=0.190 Sum_probs=351.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 76211124431222676321377840223100236887222344037997068987799999799999999708748999
Q 000270 190 MYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI 269 (1749)
Q Consensus 190 ~~~~~V~~l~~r~~gg~~~~~~~~~~l~~~~~~~~~~s~~~~t~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkI 269 (1749)
.....+..+.+.+.|..++ .+... ....|.....+....|.+|...|++++|+|+|++||+|+.|++|+|
T Consensus 16 ~~~g~~~~~~~spdg~~l~---------~~~~~-~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~l 85 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQ---------YCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRI 85 (611)
T ss_dssp CCTTCCCCCEECTTSSEEE---------EEETT-EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCCCEEEEEECCCCCEEE---------ECCCC-EEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEE
T ss_conf 4068236976679999799---------67999-7999457872427376589986599999999968999948997899
Q ss_pred EECCCC--EEEEEECCCCCCEEEEEECCCCCEEEEEECC----CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCE
Q ss_conf 977898--0899971678985999996899679998389----9099998899952899607788559999526999624
Q 000270 270 WSMETA--YCLASCRGHEGDITDLAVSSNNALVASASND----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 343 (1749)
Q Consensus 270 WDl~Tg--~~i~tL~gHs~~VtsLafSPDg~lLASGS~D----GtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~ 343 (1749)
||+.++ .....+.+|.+.|.+++|+|++++|++++.+ +.|++|+ .+..+..+.+|...|++++|+|++. .
T Consensus 86 Wd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~--~ 161 (611)
T 1nr0_A 86 WDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRP--F 161 (611)
T ss_dssp EESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSS--C
T ss_pred EECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CCCCCCEECCCCCCCEEEEECCCCC--E
T ss_conf 48989841566762255784489998999997999989977366999963--8997632547889836999889998--2
Q ss_pred EEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCC
Q ss_conf 89963289909999768895545251379997334877788888999997427999847998999941898099993899
Q 000270 344 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1749)
Q Consensus 344 ~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t 423 (1749)
.|++++.|++|++||...+++...+ ..|...|.+++|+|+|.+|++++.|+.|++|++.+
T Consensus 162 ~l~s~s~D~~v~lwd~~~~~~~~~l--------------------~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~ 221 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGPPFKFKSTF--------------------GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221 (611)
T ss_dssp EEEEEETTSCEEEEETTTBEEEEEE--------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEEEECCCEEEEEECCCCEEEEEE--------------------CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
T ss_conf 9999928980999979997576652--------------------00257169999979999899998999199988999
Q ss_pred CCCCCCCCCCCCEEEEC-------CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99989999985124312-------78998279998278722223334687788887555655579989999489809999
Q 000270 424 PNTDDSDQPNHEIDVLS-------GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496 (1749)
Q Consensus 424 ~~~~~s~q~~~~i~~l~-------gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIW 496 (1749)
+ ..+..+. +|.+.|.+++|+|++ .+|++++.|++|++|
T Consensus 222 g---------~~~~~~~~~~~~~~~h~~~V~~v~~spdg--------------------------~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 222 G---------TKTGVFEDDSLKNVAHSGSVFGLTWSPDG--------------------------TKIASASADKTIKIW 266 (611)
T ss_dssp C---------CEEEECBCTTSSSCSSSSCEEEEEECTTS--------------------------SEEEEEETTSEEEEE
T ss_pred C---------CEEEEECCCCCCCCCCCCCEEEEEECCCC--------------------------CEEEEEECCCEEEEE
T ss_conf 8---------28665136643235667878999997999--------------------------999999089809999
Q ss_pred ECCCCCCCCCCCCCC----CCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 368888885322211----112457999----------999999999999511269999801999857998999996798
Q 000270 497 IPRSRRSHPKAARWT----QAYHLKVPP----------PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 562 (1749)
Q Consensus 497 Dl~s~k~~~~~~~~~----~~~~l~v~~----------~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DG 562 (1749)
|+.+++......... ......... .........+.....+.+|...|++++|+|+|++|++++.|+
T Consensus 267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~ 346 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG 346 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 68887013440478876640689997388799995899689996889974469837888889999918999899995898
Q ss_pred EEEEEECCCCCEEEEE-CCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEE-----------------------
Q ss_conf 2999989999558971-2899883999994899948999947990999958999238-----------------------
Q 000270 563 RICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI----------------------- 618 (1749)
Q Consensus 563 tI~IWDl~tgkli~tL-~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l----------------------- 618 (1749)
.|++||+.++.+...+ .+|...|.+++|++ ++ .+++++.|+.+++|++.++.+.
T Consensus 347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~-~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 424 (611)
T 1nr0_A 347 HINSWDISTGISNRVFPDVHATMITGIKTTS-KG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 424 (611)
T ss_dssp CEEEEETTTCCEEECSSCSCSSCEEEEEECT-TS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred CEEEEECCCCCEEEECCCCCCCEEEEEEECC-CC-CEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCC
T ss_conf 4999978879256321667765078999878-99-699998489668954688543565212001489970799807996
Q ss_pred ------------------EEE-------EEEECCCCCEEEEECCCCEEEEEECCCCCCC-------CCCCCEEEECCCCC
Q ss_conf ------------------998-------6000269999999908981999988998422-------35421023318975
Q 000270 619 ------------------RIY-------EISRFRDGASIILSDDVGQLYILNTGQGESQ-------KDAKYDQFFLGDYR 666 (1749)
Q Consensus 619 ------------------~tl-------~~~~fsDG~~LAsgs~DG~I~Iwdl~sGe~~-------k~~~~~~fFs~D~~ 666 (1749)
..+ .....+||++||+++.||.|++|++..+... ......+.|++|++
T Consensus 425 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~ 504 (611)
T 1nr0_A 425 IAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA 504 (611)
T ss_dssp CEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS
T ss_pred EEEEEECCEEEEEECCCEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCC
T ss_conf 99999676399984894346406889549999289989999689973999994599222410157788607999989999
Q ss_pred CEEE-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 4468-279957823542378777989753368899999961024342113445510178988222146866776766577
Q 000270 667 PLVQ-DTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQP 745 (1749)
Q Consensus 667 ~Lv~-d~~G~Vld~~tql~Phl~~~~~ll~D~~g~P~p~~~Q~l~p~R~lg~~~~a~sPdg~~lAvg~~~~ld~~~~~~p 745 (1749)
.|+. ..++.+............. ..+. .+ +. -....++|+||+..||.+ +.|....+|.
T Consensus 505 ~las~s~d~~v~~w~~~~~~~~~~--~~~~--~~--H~-----------~~V~~v~fspdg~~lasg---s~D~~v~lW~ 564 (611)
T 1nr0_A 505 FLVATDQSRKVIPYSVANNFELAH--TNSW--TF--HT-----------AKVACVSWSPDNVRLATG---SLDNSVIVWN 564 (611)
T ss_dssp EEEEEETTSCEEEEEGGGTTEESC--CCCC--CC--CS-----------SCEEEEEECTTSSEEEEE---ETTSCEEEEE
T ss_pred EEEEECCCCCEEEEECCCCCCEEE--EEEE--EE--CC-----------CCEEEEEECCCCCEEEEE---ECCCCEEEEE
T ss_conf 899994899899988577872232--1026--40--46-----------642589989989979999---7997299997
Q ss_pred CCCCCC----CCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 658464----25789-54354444545765477
Q 000270 746 LADLDV----MIDPL-PEFIDVMDWEPENEVQS 773 (1749)
Q Consensus 746 ~~~~~~----~i~~~-~~~~~~~~w~pe~e~~s 773 (1749)
...... ....+ ...+.++.|-|+..+++
T Consensus 565 ~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s 597 (611)
T 1nr0_A 565 MNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVS 597 (611)
T ss_dssp TTCTTSCCEEETTSSTTSCEEEEEEEETTEEEE
T ss_pred CCCCCCCCCHHHCCCCCCCEEEEEECCCCEEEE
T ss_conf 887555632644467656711899858997999
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=400.66 Aligned_cols=509 Identities=18% Similarity=0.201 Sum_probs=348.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 76211124431222676321377840223100236887222344037997068987799999799999999708748999
Q 000270 190 MYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI 269 (1749)
Q Consensus 190 ~~~~~V~~l~~r~~gg~~~~~~~~~~l~~~~~~~~~~s~~~~t~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkI 269 (1749)
.|.+.|..+.+.+.|. .+++++.....-.|...+.+.+.++.+|...|++++|+|+|++|++|+.|+.|+|
T Consensus 613 ~h~~~v~~~~~s~~~~---------~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQ---------RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 683 (1249)
T ss_dssp CCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCCCEEEEEECCCCC---------EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEE
T ss_conf 6666489999879999---------8999948894999998999788876067777899999269998999818995999
Q ss_pred EECCCCEEEEEECCCCCCEEEEEECC--CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 97789808999716789859999968--9967999838990999988999528996077885599995269996248996
Q 000270 270 WSMETAYCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347 (1749)
Q Consensus 270 WDl~Tg~~i~tL~gHs~~VtsLafSP--Dg~lLASGS~DGtIrIWDl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvS 347 (1749)
||+.+++.+..+.+|...|.+++|++ ++.++++|+.|+.|++||+.++.++..+.+|.+.|++++|+|++. +|++
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~s 760 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE---LLAS 760 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT---EEEE
T ss_pred EECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCCEEEEEEECCCC---EEEE
T ss_conf 8779993689995899737999984089965999980897099998999634220127779788999925999---8999
Q ss_pred ECCCCCEEEEECCCCCCCCEEECCCCCCCC-----------CCCCC------------------------CCCCCCCCCC
Q ss_conf 328990999976889554525137999733-----------48777------------------------8888899999
Q 000270 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAV-----------AGRNM------------------------APSSSAGPQS 392 (1749)
Q Consensus 348 gS~DGtIrIWDl~tg~~i~~i~i~~~~~~~-----------sg~~~------------------------~~~~s~~~h~ 392 (1749)
++.||.|++||+.++.....+......... ..-.+ ........|.
T Consensus 761 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~ 840 (1249)
T 3sfz_A 761 CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH 840 (1249)
T ss_dssp EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSS
T ss_pred EECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEECCCCC
T ss_conf 97898599996888865530202321024677644565017999997899889997589599999568972357747877
Q ss_pred CCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 74279998479989999418980999938999998999998512431278998279998278722223334687788887
Q 000270 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1749)
Q Consensus 393 ~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~ 472 (1749)
..+.+++|+|++.++++++.+|.|++|++.+ ...+..+.+|...|.+++|+|++
T Consensus 841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~---------~~~~~~~~~h~~~v~~v~~spdg----------------- 894 (1249)
T 3sfz_A 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDS---------RLKVADCRGHLSWVHGVMFSPDG----------------- 894 (1249)
T ss_dssp SCCCEEEECSSTTEEEEECSSSCEEEEETTT---------TEEEEEECCCSSCEEEEEECTTS-----------------
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCC---------CCEEEECCCCCCCEEEEEECCCC-----------------
T ss_conf 7607999827888899994798699998678---------95653227876656899998999-----------------
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCC---CC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 5556555799899994898099993688888853222111---12------45799999999999999951126999980
Q 000270 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ---AY------HLKVPPPPMPPQPPRGGPRQRILPTPRGV 543 (1749)
Q Consensus 473 ~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~---~~------~l~v~~~~~~~~~~~g~~i~~l~~h~~~V 543 (1749)
..|++++.||.|++|++.............. .+ ...... ........+........+...+
T Consensus 895 ---------~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i 964 (1249)
T 3sfz_A 895 ---------SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDN-IRGLQLIAGKTGQIDYLPEAQV 964 (1249)
T ss_dssp ---------SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEES-SSSEEEEEESSCCEEEECCSCE
T ss_pred ---------CEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECC-CCCEEEEECCCCEEEECCCCCE
T ss_conf ---------989999589728988746652010211331036897599868998137-7624898447650897256727
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf 19998579989999967982999989999558971289988399999489994899994799099995899923899860
Q 000270 544 NMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI 623 (1749)
Q Consensus 544 tsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~ 623 (1749)
.+++|+|+++++++|+.+|.|++|++.++..+..+.+|...|++++|+| ++.++++++.||.|++|++.++..+.....
T Consensus 965 ~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1043 (1249)
T 3sfz_A 965 SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYVFLQAH 1043 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEECCBCC
T ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECC-CCCEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 8999958997799986999889997578723443036777168999989-999899986998799998799966898527
Q ss_pred ------EECCCCCEEEEECCCCEEEEEECCCCCCCCCC------CCEEEECCCCCCEEE-CCCCCEEECCCCCCCCCCCC
Q ss_conf ------00269999999908981999988998422354------210233189754468-27995782354237877798
Q 000270 624 ------SRFRDGASIILSDDVGQLYILNTGQGESQKDA------KYDQFFLGDYRPLVQ-DTYGNVLDQETQLAPHRRNL 690 (1749)
Q Consensus 624 ------~~fsDG~~LAsgs~DG~I~Iwdl~sGe~~k~~------~~~~fFs~D~~~Lv~-d~~G~Vld~~tql~Phl~~~ 690 (1749)
-.+..+..+++++.+|.|++|++.+++..... .....|++|+..++. ..+|.+.-...........
T Consensus 1044 ~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~- 1122 (1249)
T 3sfz_A 1044 QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE- 1122 (1249)
T ss_dssp SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-
T ss_pred CCCEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEE-
T ss_conf 8738999990899589997889689988898865588746688489999989999899984999489987898500125-
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC-----------CCCCCC
Q ss_conf 975336889999996102434211344551017898822214686677676657765846425-----------789543
Q 000270 691 QDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMI-----------DPLPEF 759 (1749)
Q Consensus 691 ~~ll~D~~g~P~p~~~Q~l~p~R~lg~~~~a~sPdg~~lAvg~~~~ld~~~~~~p~~~~~~~i-----------~~~~~~ 759 (1749)
..+ +. -....++|+|++..+|++ +.+....+|.......+. ..+...
T Consensus 1123 ------l~~--h~-----------~~v~~~~~s~dg~~lat~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1180 (1249)
T 3sfz_A 1123 ------LKG--HN-----------GCVRCSAFSLDGILLATG---DDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW 1180 (1249)
T ss_dssp ------CCC--CS-----------SCEEEEEECSSSSEEEEE---ETTSCCCEEESSSSCCCCCCCCCC-------CCSC
T ss_pred ------ECC--CC-----------CCEEEEEECCCCCEEEEE---ECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCE
T ss_conf ------506--87-----------767999997999989998---28997999988999457885144444210256742
Q ss_pred CCCCCCCCCCC
Q ss_conf 54444545765
Q 000270 760 IDVMDWEPENE 770 (1749)
Q Consensus 760 ~~~~~w~pe~e 770 (1749)
+..+.|-|++.
T Consensus 1181 v~~l~fs~dg~ 1191 (1249)
T 3sfz_A 1181 VTDVCFSPDSK 1191 (1249)
T ss_dssp CCEEEECTTSS
T ss_pred EEEEEECCCCC
T ss_conf 89999978999
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=377.71 Aligned_cols=374 Identities=16% Similarity=0.186 Sum_probs=187.1
Q ss_pred CEEEEECCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 03799706898779999979999-99997087489999778980899971678985999996899679998389909999
Q 000270 234 QNIKRVRGHRNAVYCAIFDRSGR-YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1749)
Q Consensus 234 ~~i~tL~GH~~~VtsIaFSpDG~-~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIW 312 (1749)
.....+.+|...|++++|+|++. +|++|+.|++|++|+..+++++.++.+|...|.+++|+|++++||+++.|++|++|
T Consensus 138 ~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lw 217 (611)
T 1nr0_A 138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217 (611)
T ss_dssp CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE
T ss_conf 97632547889836999889998299999289809999799975766520025716999997999989999899919998
Q ss_pred ECCCCCEEEEEC-------CCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCC------CC
Q ss_conf 889995289960-------77885599995269996248996328990999976889554525137999733------48
Q 000270 313 RLPDGLPISVLR-------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV------AG 379 (1749)
Q Consensus 313 Dl~tgk~i~tL~-------gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~------sg 379 (1749)
++.+++++..+. +|.+.|.+++|+|++. +|++++.|++|++||+.+++....+......... .+
T Consensus 218 d~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~---~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (611)
T 1nr0_A 218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT---KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK 294 (611)
T ss_dssp ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS---EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS
T ss_pred ECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCC---EEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECC
T ss_conf 89998286651366432356678789999979999---999990898099996888701344047887664068999738
Q ss_pred -----------------CCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEE-CC
Q ss_conf -----------------777888889999974279998479989999418980999938999998999998512431-27
Q 000270 380 -----------------RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL-SG 441 (1749)
Q Consensus 380 -----------------~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l-~g 441 (1749)
..........+|...|++++|+|+|.+|++++.|+.|++||+.++. ....+ .+
T Consensus 295 ~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~---------~~~~~~~~ 365 (611)
T 1nr0_A 295 QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI---------SNRVFPDV 365 (611)
T ss_dssp SCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------EEECSSCS
T ss_pred CEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCC---------EEEECCCC
T ss_conf 879999589968999688997446983788888999991899989999589849999788792---------56321667
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCC----CCCCCCCC
Q ss_conf 89982799982787222233346877888875556555799899994898099993688888853222----11112457
Q 000270 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR----WTQAYHLK 517 (1749)
Q Consensus 442 H~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~----~~~~~~l~ 517 (1749)
|...|.+++|++++ .+++++.|+.+++|++........... ......+.
T Consensus 366 h~~~v~~~~~s~~~---------------------------~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 366 HATMITGIKTTSKG---------------------------DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp CSSCEEEEEECTTS---------------------------CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred CCCEEEEEEECCCC---------------------------CEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEE
T ss_conf 76507899987899---------------------------699998489668954688543565212001489970799
Q ss_pred CCCCCCCC--------CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE--EEECCCCCCEEE
Q ss_conf 99999999--------99999995112699998019998579989999967982999989999558--971289988399
Q 000270 518 VPPPPMPP--------QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV--HSLTGHTESTYV 587 (1749)
Q Consensus 518 v~~~~~~~--------~~~~g~~i~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli--~tL~gHs~~Vts 587 (1749)
+.+..... .......... ..+...+.+++|+|||++|++|+.|+.|++||+.++.+. .. .+|...|++
T Consensus 419 ~s~dg~~~~~~~~~~v~~~~~~~~~~-~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~ 496 (611)
T 1nr0_A 419 VSADGDIAVAACYKHIAIYSHGKLTE-VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITS 496 (611)
T ss_dssp ECTTSSCEEEEESSEEEEEETTEEEE-EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEE
T ss_pred EECCCCEEEEEECCEEEEEECCCEEE-EECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCCCEEE
T ss_conf 80799699999676399984894346-4068895499992899899996899739999945992224101-577886079
Q ss_pred EEECCCCCCEEEEEECCCCEEEEECCC-CCEEEE--E--------EEEECCCCCEEEEECCCCEEEEEECCCC
Q ss_conf 999489994899994799099995899-923899--8--------6000269999999908981999988998
Q 000270 588 LDVHPFNPRIAMSAGYDGKTIVWDIWE-GIPIRI--Y--------EISRFRDGASIILSDDVGQLYILNTGQG 649 (1749)
Q Consensus 588 IafSP~d~rlLvSas~DGtIrIWDi~t-G~~l~t--l--------~~~~fsDG~~LAsgs~DG~I~Iwdl~sG 649 (1749)
++|+| ++++|++++.|++|++|++.+ ++++.. + ...+.+||++||+++.|+.|++|++..+
T Consensus 497 v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 497 VAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred EEECC-CCCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
T ss_conf 99989-9998999948998999885778722321026404664258998998997999979972999978875
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=377.63 Aligned_cols=363 Identities=24% Similarity=0.401 Sum_probs=268.6
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 03799706898779999979999999970874899997789808999716789859999968996799983899099998
Q 000270 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1749)
Q Consensus 234 ~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWD 313 (1749)
+..++|+||.+.|+|++|+|||++||+|+.|++|+|||. ++++++++.+|...|++++|+|++++||+++.|++|+|||
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 894398789985799999899899999938998999979-9978999968989989999989999999996989799998
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCC----------CCCCC-----
Q ss_conf 899952899607788559999526999624899632899099997688955452513799----------97334-----
Q 000270 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP----------SDAVA----- 378 (1749)
Q Consensus 314 l~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~----------~~~~s----- 378 (1749)
+ +++++..+.+|...|.+++|+|++. +|++++.|+.+++|+............... .....
T Consensus 86 ~-~~~~~~~~~~~~~~v~~~~~s~d~~---~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (577)
T 2ymu_A 86 R-NGQLLQTLTGHSSSVRGVAFSPDGQ---TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161 (577)
T ss_dssp T-TSCEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred C-CCCEEEEEECCCCCEEEEEECCCCC---EEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCC
T ss_conf 9-9978999978999889999989999---89998079833520235520011047777435554203776320025553
Q ss_pred -----CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECC
Q ss_conf -----877788888999997427999847998999941898099993899999899999851243127899827999827
Q 000270 379 -----GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1749)
Q Consensus 379 -----g~~~~~~~s~~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSp 453 (1749)
............+...+.+++|+|++.+|++++.|+.|++|+.. ...+..+.+|...|.+++|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~----------~~~~~~~~~~~~~v~~~~~s~ 231 (577)
T 2ymu_A 162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----------GQLLQTLTGHSSSVRGVAFSP 231 (577)
T ss_dssp EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----------SCEEEEEECCSSCEEEEEECT
T ss_pred CEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECC----------CCEEEEEECCCCCEEEEEECC
T ss_conf 1000000000000026877635665416997789998599989999499----------968999946889889999979
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87222233346877888875556555799899994898099993688888853222111124579999999999999995
Q 000270 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1749)
Q Consensus 454 dg~as~~s~~~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i 533 (1749)
++ ..|++++.|+.|++|+... ..+
T Consensus 232 dg--------------------------~~l~~~~~d~~i~~w~~~~------------------------------~~~ 255 (577)
T 2ymu_A 232 DG--------------------------QTIASASDDKTVKLWNRNG------------------------------QLL 255 (577)
T ss_dssp TS--------------------------SCEEEEETTSCEEEECTTS------------------------------CEE
T ss_pred CC--------------------------CEEEEEECCCEEEEEECCC------------------------------CEE
T ss_conf 99--------------------------9999991899899995999------------------------------799
Q ss_pred CCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECC
Q ss_conf 11269999801999857998999996798299998999955897128998839999948999489999479909999589
Q 000270 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 534 ~~l~~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~ 613 (1749)
..+.+|...|++++|+|++++|++++.|+.|++|+. +++++..+.+|...|.+++|+| ++.++++++.|+.|++|++.
T Consensus 256 ~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCCEEEEEECC
T ss_conf 998068898799999689999999959997999948-9958999706889769999999-99999999699959999699
Q ss_pred CCCEEEEEEEE--------ECCCCCEEEEECCCCEEEEEECCCCCCCC------CCCCEEEECCCCCCEEEC
Q ss_conf 99238998600--------02699999999089819999889984223------542102331897544682
Q 000270 614 EGIPIRIYEIS--------RFRDGASIILSDDVGQLYILNTGQGESQK------DAKYDQFFLGDYRPLVQD 671 (1749)
Q Consensus 614 tG~~l~tl~~~--------~fsDG~~LAsgs~DG~I~Iwdl~sGe~~k------~~~~~~fFs~D~~~Lv~d 671 (1749)
. ..+..+..+ ..++|.+|++++.+|.|.+|+. .++... .....+.|++|++.|+..
T Consensus 334 ~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 403 (577)
T 2ymu_A 334 G-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASA 403 (577)
T ss_dssp S-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred C-CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEECCCCCCEEEEEECCCCCEEEEE
T ss_conf 9-725787478897799999899999999969998999908-997899852788974899998999999999
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=375.64 Aligned_cols=303 Identities=19% Similarity=0.305 Sum_probs=251.4
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 37997068987799999799999999708748999977898089997167898599999689967999838990999988
Q 000270 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1749)
Q Consensus 235 ~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl 314 (1749)
....+.+|.+.|+|++|+|+|++||+|+.||+|+||++.++..+..+.+|...|.+++|+|++++|++++.|+.|+|||+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 22787166664899998799998999948894999998999788876067777899999269998999818995999877
Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99952899607788559999526999624899632899099997688955452513799973348777888889999974
Q 000270 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1749)
Q Consensus 315 ~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~ 394 (1749)
.+++++..+.+|...|.+++|+|++... ++++++.||.|++||+.++.+...+ ..|...
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~~~~--------------------~~h~~~ 745 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHL-LLATGSNDFFLKLWDLNQKECRNTM--------------------FGHTNS 745 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSCC-EEEEEETTSCEEEEETTSSSEEEEE--------------------CCCSSC
T ss_pred CCCCEEEEECCCCCCEEEEEEECCCCCE-EEEEEECCCEEEEEECCCCCHHHEE--------------------CCCCCC
T ss_conf 9993689995899737999984089965-9999808970999989996342201--------------------277797
Q ss_pred EEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCC----CCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 279998479989999418980999938999998999998----5124312789982799982787222233346877888
Q 000270 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN----HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1749)
Q Consensus 395 V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~----~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~ 470 (1749)
|.+++|+|++.+|++++.||.|++|++.++......... ............+.+++|++++
T Consensus 746 v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--------------- 810 (1249)
T 3sfz_A 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG--------------- 810 (1249)
T ss_dssp EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS---------------
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCC---------------
T ss_conf 88999925999899997898599996888865530202321024677644565017999997899---------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 87555655579989999489809999368888885322211112457999999999999999511269999801999857
Q 000270 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL 550 (1749)
Q Consensus 471 ~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSP 550 (1749)
..+++++ ++.+.+|++.++.... ....+|...|.+++|+|
T Consensus 811 -----------~~l~~~~-~~~v~~~d~~~~~~~~----------------------------~~~~~~~~~v~~~~~sp 850 (1249)
T 3sfz_A 811 -----------DKIIVAA-KNKVLLFDIHTSGLLA----------------------------EIHTGHHSTIQYCDFSP 850 (1249)
T ss_dssp -----------SEEEEEE-TTEEEEEETTTCCEEE----------------------------EEECSSSSCCCEEEECS
T ss_pred -----------CEEEEEC-CCCEEEEEECCCCCEE----------------------------EECCCCCCCEEEEEECC
T ss_conf -----------8899975-8959999956897235----------------------------77478777607999827
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 9989999967982999989999558971289988399999489994899994799099995899
Q 000270 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1749)
Q Consensus 551 DG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~t 614 (1749)
++.++++++.|+.|++|++.++..+..+.+|...|++++|+| ++.++++++.||.|++|++.+
T Consensus 851 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 851 YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHH
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCC
T ss_conf 888899994798699998678956532278766568999989-999899995897289887466
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=372.17 Aligned_cols=407 Identities=23% Similarity=0.376 Sum_probs=258.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 87621112443122267632137784022310023688722234403799706898779999979999999970874899
Q 000270 189 HMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVK 268 (1749)
Q Consensus 189 ~~~~~~V~~l~~r~~gg~~~~~~~~~~l~~~~~~~~~~s~~~~t~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIk 268 (1749)
..|.+.|..++|.+.|..++ ++......-.|. .+.+.+++|.||...|++++|+|+|++||+++.|++|+
T Consensus 13 ~GH~~~V~~~a~spdg~~la---------s~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~ 82 (577)
T 2ymu_A 13 EAHSSSVRGVAFSPDGQTIA---------SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 82 (577)
T ss_dssp CCCSSCEEEEEECTTSSCEE---------EEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCCCEEEEEECCCCCEEE---------EEECCCEEEEEE-CCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 78998579999989989999---------993899899997-99978999968989989999989999999996989799
Q ss_pred EEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC------------------------------
Q ss_conf 99778980899971678985999996899679998389909999889995------------------------------
Q 000270 269 IWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL------------------------------ 318 (1749)
Q Consensus 269 IWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~tgk------------------------------ 318 (1749)
|||+ +++++..+.+|...|.+++|+|++++|++++.|+.+++|+.....
T Consensus 83 vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (577)
T 2ymu_A 83 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161 (577)
T ss_dssp EEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCC
T ss_conf 9989-997899997899988999998999989998079833520235520011047777435554203776320025553
Q ss_pred ----------EEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf ----------2899607788559999526999624899632899099997688955452513799973348777888889
Q 000270 319 ----------PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1749)
Q Consensus 319 ----------~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~ 388 (1749)
.......+...|.++.|+|++. +|++++.|+.|++|+.. ++....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~v~~w~~~-~~~~~~~-------------------- 217 (577)
T 2ymu_A 162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ---TIASASDDKTVKLWNRN-GQLLQTL-------------------- 217 (577)
T ss_dssp EEEEECTTSCEEEEEECCSSCEEEEEECTTSS---CEEEEETTSEEEEECTT-SCEEEEE--------------------
T ss_pred CEECCCCCEEEEEECCCCCCCEEEEEECCCCC---EEEEECCCCEEEEEECC-CCEEEEE--------------------
T ss_conf 10000000000000268776356654169977---89998599989999499-9689999--------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99997427999847998999941898099993899999899999851243127899827999827872222333468778
Q 000270 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1749)
Q Consensus 389 ~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~ 468 (1749)
..|...|.+++|+|++.+|++++.|+.|++|+.. ...+..+.+|...|.+++|+|++
T Consensus 218 ~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~----------~~~~~~~~~~~~~v~~v~~~~d~------------- 274 (577)
T 2ymu_A 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----------GQLLQTLTGHSSSVNGVAFRPDG------------- 274 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT----------SCEEEEECCCSSCEEEEEECTTS-------------
T ss_pred ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC----------CCEEEEEECCCCCEEEEEECCCC-------------
T ss_conf 4688988999997999999999189989999599----------97999980688987999996899-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCCCCCCCCC
Q ss_conf 88875556555799899994898099993688888853222111124579999999-----------9999999951126
Q 000270 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP-----------PQPPRGGPRQRIL 537 (1749)
Q Consensus 469 ~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~-----------~~~~~g~~i~~l~ 537 (1749)
..+++++.|+.|++|+..................+.+.+.... .-...+.....+.
T Consensus 275 -------------~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~ 341 (577)
T 2ymu_A 275 -------------QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT 341 (577)
T ss_dssp -------------SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC
T ss_pred -------------CEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE
T ss_conf -------------9999995999799994899589997068897699999999999999969995999969997257874
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 99998019998579989999967982999989999558971289988399999489994899994799099995899923
Q 000270 538 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1749)
Q Consensus 538 ~h~~~VtsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~ 617 (1749)
+|...+.+++|+|++++|++++.|+.|++|+. +++++..+.+|...|.+++|+| ++++|++++.|+.|++|+. +++.
T Consensus 342 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~ 418 (577)
T 2ymu_A 342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQL 418 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEEEC-CCCE
T ss_conf 78897799999899999999969998999908-9978998527889748999989-9999999949998999969-9978
Q ss_pred EEEEEEE--------ECCCCCEEEEECCCCEEEEEECCCCCCCC------CCCCEEEECCCCCCEEE
Q ss_conf 8998600--------02699999999089819999889984223------54210233189754468
Q 000270 618 IRIYEIS--------RFRDGASIILSDDVGQLYILNTGQGESQK------DAKYDQFFLGDYRPLVQ 670 (1749)
Q Consensus 618 l~tl~~~--------~fsDG~~LAsgs~DG~I~Iwdl~sGe~~k------~~~~~~fFs~D~~~Lv~ 670 (1749)
+..+..+ ..+|+.+|++++.|+.|.+|+. +++... .....+.|++|+..|+.
T Consensus 419 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 419 LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEE
T ss_conf 9896288997579999899999999939998999979-99889997278997789999699999999
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=365.46 Aligned_cols=310 Identities=22% Similarity=0.347 Sum_probs=270.2
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 79970689877999997999999997087489999778980899971678985999996899679998389909999889
Q 000270 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1749)
Q Consensus 236 i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIWDl~ 315 (1749)
...+.||...|+|++|+|++.+|++|+.||+|+|||+.++..+.++.+|...|.+++|+|++.+|++|+.|++|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 07661667768999996999989999389859999899993778881667868789985999999999189819999589
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 99528996077885599995269996248996328990999976889554525137999733487778888899999742
Q 000270 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1749)
Q Consensus 316 tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~~~h~~~V 395 (1749)
+++++..+.+|...|.+++|+|++. +|++++.|++|++||+.++.+...+. .|...|
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~---~l~s~s~D~~i~~wd~~~~~~~~~~~--------------------~h~~~v 237 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGD---HIVSASRDKTIKMWEVQTGYCVKTFT--------------------GHREWV 237 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSS---EEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSSCE
T ss_pred CCCEEEEECCCCCCEEEEEEECCCC---EEEEEECCCEEEEEECCCCCEEEEEE--------------------CCCCCE
T ss_conf 9826699828999778999967999---99999689969999899994899992--------------------788628
Q ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79998479989999418980999938999998999998512431278998279998278722223334687788887555
Q 000270 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1749)
Q Consensus 396 ~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~ 475 (1749)
.+++|++++.+|++|+.|+.|++|++.+ ......+.+|...|.+++|+|+............ ...
T Consensus 238 ~~~~~~~~g~~l~s~s~D~~v~vwd~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~------~~~ 302 (410)
T 1vyh_C 238 RMVRPNQDGTLIASCSNDQTVRVWVVAT---------KECKAELREHRHVVECISWAPESSYSSISEATGS------ETK 302 (410)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT---------CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC------C--
T ss_pred EEEEECCCCCEEEEECCCCEEEEEECCC---------CCEEEEECCCCCEEEEEEECCCCCCCCHHHHCCC------CCC
T ss_conf 9999989999999991899099998989---------7436673378745899998586554310121255------555
Q ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 65557998999948980999936888888532221111245799999999999999951126999980199985799899
Q 000270 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1749)
Q Consensus 476 ~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIafSPDG~~L 555 (1749)
.....+.+|++++.||.|++||+.++. ....+.+|...|++++|+|++++|
T Consensus 303 ~~~~~g~~l~sgs~D~~i~iwd~~~~~-----------------------------~~~~~~~h~~~v~~v~~~~~g~~l 353 (410)
T 1vyh_C 303 KSGKPGPFLLSGSRDKTIKMWDVSTGM-----------------------------CLMTLVGHDNWVRGVLFHSGGKFI 353 (410)
T ss_dssp -----CCEEEEEETTSEEEEEETTTTE-----------------------------EEEEEECCSSCEEEEEECSSSSCE
T ss_pred CCCCCCCEEEEEECCCEEEEEECCCCC-----------------------------EEEEEECCCCCEEEEEECCCCCEE
T ss_conf 667888899999389849999889996-----------------------------699997788858999994998999
Q ss_pred EEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECC
Q ss_conf 9996798299998999955897128998839999948999489999479909999589
Q 000270 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1749)
Q Consensus 556 ASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~ 613 (1749)
++|+.|+.|++||+.+++++.++.+|...|++++|+| ++.+|++++.||+|++|++.
T Consensus 354 ~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 354 LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC--
T ss_pred EEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECC-CCCEEEEEECCCCEEEEECC
T ss_conf 9995979299998999906899847778689999828-99999999279948997379
No 8
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=354.22 Aligned_cols=315 Identities=21% Similarity=0.309 Sum_probs=266.9
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 40379970689877999997999999997087489999778980899971678985999996899679998389909999
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1749)
Q Consensus 233 ~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIW 312 (1749)
++..+.|.+|.+.|+|++|+|+|.+||+|+.||.|+||++.++..+..+.+|...|++++|+|++.+|++++.||.|++|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred CCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEE
T ss_conf 65000450589856899988999989999479989999899991677873389968899996899989999289949999
Q ss_pred ECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCC-CCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8899952899607788559999526999624899632899099997688955-452513799973348777888889999
Q 000270 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF-SPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1749)
Q Consensus 313 Dl~tgk~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~-i~~i~i~~~~~~~sg~~~~~~~s~~~h 391 (1749)
++.+++.+..+.+|.+.|++++|+|++. +|++++.||.|++|++.++.. ...+ ..|
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~--------------------~~~ 139 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---YVLSGSDDLTVKLWNWENNWALEQTF--------------------EGH 139 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSS---EEEEEETTSEEEEEEGGGTSEEEEEE--------------------ECC
T ss_pred ECCCCCEEEEEECCCCCEEEEEEECCCC---EEEEECCCCEEEEEECCCCCEEEEEE--------------------CCC
T ss_conf 8999958799816899789999958999---89999289989999899995487998--------------------379
Q ss_pred CCCEEEEEECC-CCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEC-CCCCCEEEEEECC--CCCCCCCCCCCCCC
Q ss_conf 97427999847-99899994189809999389999989999985124312-7899827999827--87222233346877
Q 000270 392 SHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS-GHENDVNYVQFSG--CAVASRFSLADSSK 467 (1749)
Q Consensus 392 ~~~V~sIafSP-DG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~-gH~~~V~sIafSp--dg~as~~s~~~~~~ 467 (1749)
...|.+++|+| ++..|++++.||.|++|++..+ .....+. .+...+.+++|+| ++
T Consensus 140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~------------ 198 (814)
T 3mkq_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS---------TPNFTLTTGQERGVNYVDYYPLPDK------------ 198 (814)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS---------SCSEEEECCCTTCCCEEEECCSTTC------------
T ss_pred CCCEEEEEEECCCCCEEEEEECCCEEEEEECCCC---------CCEEEEECCCCCCEEEEEEEECCCC------------
T ss_conf 9868899997699999999948894999989999---------6106983588897799999977999------------
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 88887555655579989999489809999368888885322211112457999999999999999511269999801999
Q 000270 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1749)
Q Consensus 468 ~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIa 547 (1749)
..+++++.||.|++|++.++. ....+.+|...|++++
T Consensus 199 --------------~~l~~~~~dg~i~~~d~~~~~-----------------------------~~~~~~~~~~~v~~~~ 235 (814)
T 3mkq_A 199 --------------PYMITASDDLTIKIWDYQTKS-----------------------------CVATLEGHMSNVSFAV 235 (814)
T ss_dssp --------------CEEEEECTTSEEEEEETTTTE-----------------------------EEEEEECCSSCEEEEE
T ss_pred --------------CEEEEEECCCEEEEEECCCCC-----------------------------EEEEECCCCCCEEEEE
T ss_conf --------------899999389979999999991-----------------------------8899847888878999
Q ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEECC
Q ss_conf 85799899999679829999899995589712899883999994899948999947990999958999238998600026
Q 000270 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR 627 (1749)
Q Consensus 548 fSPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~l~tl~~~~fs 627 (1749)
|+|++.+|++++.||.|++||+.+++.+..+..|...+.+++|+|++..++++++.|+.+.+|++..+.....+ .+
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 311 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSL----DP 311 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEE----CS
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCEEEEECCCCCCEEEE----CC
T ss_conf 85999999999089969999899994777840688867999992499950999990798799976799741677----79
Q ss_pred CCCEEEEECCC
Q ss_conf 99999999089
Q 000270 628 DGASIILSDDV 638 (1749)
Q Consensus 628 DG~~LAsgs~D 638 (1749)
+|..+++++.+
T Consensus 312 ~g~~~~~~~~~ 322 (814)
T 3mkq_A 312 VGKLVWSGGKN 322 (814)
T ss_dssp SSEEEEECCTT
T ss_pred CCCEEEECCCC
T ss_conf 98789977636
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=347.87 Aligned_cols=312 Identities=20% Similarity=0.335 Sum_probs=264.5
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 44037997068987799999799999999708748999977898089997167898599999689967999838990999
Q 000270 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311 (1749)
Q Consensus 232 t~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrI 311 (1749)
...+.++|.||.+.|++++|+|++++|++|+.|++|+|||+.++..+..+.+|...|.+++|+|++++|++|+.|+.|++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred EEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEEE
T ss_conf 13982000045347789999689998999918980999878888601488559987899999899998999547985899
Q ss_pred EECCCCC-------EEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 9889995-------289960778855999952699962489963289909999768895545251379997334877788
Q 000270 312 WRLPDGL-------PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1749)
Q Consensus 312 WDl~tgk-------~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~ 384 (1749)
|++.+.. ....+.+|.+.|.++.|.|++. ..|++++.|++|++||+.++.....+...
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~--~~l~s~s~D~~i~~wd~~~~~~~~~~~~~------------- 199 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE--TRLITGSGDQTCVLWDVTTGQRISIFGSE------------- 199 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS--SCEEEECTTSCEEEECTTTCCEEEEECCC-------------
T ss_pred EECCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCC--CEEEEECCCCCEEEEECCCCCEEEEEECC-------------
T ss_conf 989777555677331264068975468999964899--78999779981999986779578996056-------------
Q ss_pred CCCCCCCCCCEEEEEECC-CCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 888999997427999847-9989999418980999938999998999998512431278998279998278722223334
Q 000270 385 SSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLA 463 (1749)
Q Consensus 385 ~~s~~~h~~~V~sIafSP-DG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~ 463 (1749)
....|...|.+++|++ ++.+|++|+.|+.|++||++.. ...+..+.+|...|.+++|+|++
T Consensus 200 --~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~--------~~~~~~~~~h~~~v~~v~~~p~~-------- 261 (380)
T 3iz6_a 200 --FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT--------SRAVRTYHGHEGDINSVKFFPDG-------- 261 (380)
T ss_dssp --SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT--------CCCCEEECCCSSCCCEEEECTTS--------
T ss_pred --CCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCC--------CCCEEEECCCCCCEEEEEEECCC--------
T ss_conf --678875676999920699998999978986999978889--------73469988748875799991699--------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 68778888755565557998999948980999936888888532221111245799999999999999951126999980
Q 000270 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGV 543 (1749)
Q Consensus 464 ~~~~~~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~V 543 (1749)
.+|++++.||+|++||++++........ .......+...|
T Consensus 262 ------------------~~l~s~s~D~~i~lwd~~~~~~~~~~~~----------------------~~~~~~~~~~~v 301 (380)
T 3iz6_a 262 ------------------QRFGTGSDDGTCRLFDMRTGHQLQVYNR----------------------EPDRNDNELPIV 301 (380)
T ss_dssp ------------------SEEEEECSSSCEEEEETTTTEEEEEECC----------------------CCSSSCCSSCSC
T ss_pred ------------------CEEEEECCCCEEEEEECCCCCEEEEECC----------------------CCCCCCCCCCCE
T ss_conf ------------------9699983899699998889968898615----------------------655566556863
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE----CCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 19998579989999967982999989999558971----289988399999489994899994799099995899923
Q 000270 544 NMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL----TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1749)
Q Consensus 544 tsIafSPDG~~LASgs~DGtI~IWDl~tgkli~tL----~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWDi~tG~~ 617 (1749)
++++|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+| ++.+|++++.|++|++|++...+.
T Consensus 302 ~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 302 TSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp SEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEEEECTTSCEEEEECCSSSS
T ss_pred EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCC
T ss_conf 89998899998999979997999988778157897023677778457999899-999899960899889995378766
No 10
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=344.24 Aligned_cols=292 Identities=22% Similarity=0.363 Sum_probs=260.5
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 40379970689877999997999999997087489999778980899971678985999996899679998389909999
Q 000270 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1749)
Q Consensus 233 ~~~i~tL~GH~~~VtsIaFSpDG~~LATGS~DGtIkIWDl~Tg~~i~tL~gHs~~VtsLafSPDg~lLASGS~DGtIrIW 312 (1749)
+...++|+||.+.|++++|+|++++|++|+.||+|+|||+.++..+..+..|...|.+++|+|++.+|++|+.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred CHHHEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 21100104877836899988999999998188968999899987433760388618899999999999998089819999
Q ss_pred ECCCC----CEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 88999----52899607788559999526999624899632899099997688955452513799973348777888889
Q 000270 313 RLPDG----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1749)
Q Consensus 313 Dl~tg----k~i~tL~gHs~~VtsIaFSPdg~~~~~LvSgS~DGtIrIWDl~tg~~i~~i~i~~~~~~~sg~~~~~~~s~ 388 (1749)
++.++ .....+.+|.+.|.++.|++++ .+++++.|+.|++||+.++.....+
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~l~s~s~d~~i~~wd~~~~~~~~~~-------------------- 180 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVTSSGDTTCALWDIETGQQTTTF-------------------- 180 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT----EEEEEETTSCEEEEETTTTEEEEEE--------------------
T ss_pred ECCCCCCCCEEEEEECCCCCCEEEEEECCCC----CEEEEECCCCEEEEECCCCCEEEEE--------------------
T ss_conf 7966888613677844877638999987999----6999989992999989999188997--------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99997427999847998999941898099993899999899999851243127899827999827872222333468778
Q 000270 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1749)
Q Consensus 389 ~~h~~~V~sIafSPDG~~LasGS~DGtIrIWDl~t~~~~~s~q~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~ 468 (1749)
..|...|.+++|+|++.+|++|+.|+.|++||+.+ ...+..+.+|...|.+++|+|++
T Consensus 181 ~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~---------~~~~~~~~~h~~~v~~v~~~p~~------------- 238 (340)
T 1got_B 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---------GMCRQTFTGHESDINAICFFPNG------------- 238 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------CSEEEEECCCSSCEEEEEECTTS-------------
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC---------CEEEEEECCCCCCEEEEEECCCC-------------
T ss_conf 69998668999989999999993899399977899---------81678974876877999994999-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 88875556555799899994898099993688888853222111124579999999999999995112699998019998
Q 000270 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1749)
Q Consensus 469 ~~~~~~~~s~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~v~~~~~~~~~~~g~~i~~l~~h~~~VtsIaf 548 (1749)
..|++++.||+|++||+++.+..... ....+...|++++|
T Consensus 239 -------------~~l~s~s~d~~v~iwd~~~~~~~~~~---------------------------~~~~~~~~v~~~~~ 278 (340)
T 1got_B 239 -------------NAFATGSDDATCRLFDLRADQELMTY---------------------------SHDNIICGITSVSF 278 (340)
T ss_dssp -------------SEEEEEETTSCEEEEETTTTEEEEEE---------------------------CCTTCCSCEEEEEE
T ss_pred -------------CEEEEECCCCCEEEEECCCCCEEEEE---------------------------CCCCCCCCEEEEEE
T ss_conf -------------98999748981999988999189997---------------------------26885241699999
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf 579989999967982999989999558971289988399999489994899994799099995
Q 000270 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1749)
Q Consensus 549 SPDG~~LASgs~DGtI~IWDl~tgkli~tL~gHs~~VtsIafSP~d~rlLvSas~DGtIrIWD 611 (1749)
+|+|++|++|+.|+.|++||+.++..+..+.+|...|.+++|+| ++.+|++++.|+.|++||
T Consensus 279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECC-CCCEEEEECCCCCEEECC
T ss_conf 89999999977999099988413838658505778488999829-999899972886189559
Done!