BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000272
         (1744 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
 pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
 pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
           With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
 pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
           With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
          Length = 279

 Score = 32.0 bits (71), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 11/120 (9%)

Query: 210 HEEHGLDTTLLLVPGTA-EG-SIEKRIRLFVCEALRRGFFPVVMNPRGCGGSPLTTSRLF 267
           +E+ G    ++L+ G   +G S E++ R    E L +G+  +  + RG GGS    S++ 
Sbjct: 17  YEDQGSGQPVVLIHGYPLDGHSWERQTR----ELLAQGYRVITYDRRGFGGS----SKVN 68

Query: 268 TAADSDDICTAIQFIGKARPWTTLMSVGWGYGANMLTKYLAEVG-ERTPLTAVTCIDNPF 326
           T  D D     +  + +      ++ VG+  G   L +Y+A  G ER    A      PF
Sbjct: 69  TGYDYDTFAADLHTVLETLDLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPF 128


>pdb|3RHG|A Chain A, Crystal Structure Of Amidohydrolase Pmi1525 (Target
           Efi-500319) From Proteus Mirabilis Hi4320
          Length = 365

 Score = 30.8 bits (68), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 288 WTTLMSVGWGYGANMLTKYLAEVGERTPLTAVTCIDNPFDLEEA 331
           W      GWG+  N+    LA+ G    +    CIDNP +L  A
Sbjct: 301 WAKNGGNGWGFVPNVFLSLLAQRGIDKTIIDKLCIDNPANLLAA 344


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.132    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,612,059
Number of Sequences: 62578
Number of extensions: 1885604
Number of successful extensions: 3240
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3228
Number of HSP's gapped (non-prelim): 21
length of query: 1744
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1632
effective length of database: 7,964,601
effective search space: 12998228832
effective search space used: 12998228832
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)