Query 000273
Match_columns 1741
No_of_seqs 237 out of 377
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 17:33:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000273.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_51-55//hhsearch_pdb/000273hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 1.0 1 1 29.7 3.2 134 1115-1260 224-362 (802)
2 2ysr_A DEP domain-containing p 1.0 1 1 19.3 -1.1 30 640-669 9-38 (105)
3 3fgr_B Putative phospholipase 1.0 1 1 17.7 0.6 15 1210-1224 328-342 (357)
4 2z86_A Chondroitin synthase; G 1.0 1 1 16.2 -0.1 189 1030-1260 375-566 (625)
5 2bsz_A Arylamine N-acetyltrans 1.0 1 1 16.1 -1.6 16 1174-1189 177-192 (278)
6 2vfb_A Arylamine N-acetyltrans 1.0 1 1 16.1 -0.7 15 1174-1188 177-191 (280)
7 1ich_A TNF-1, tumor necrosis f 1.0 1 1 16.0 0.9 80 922-1001 11-102 (112)
8 1w5r_A Arylamine N-acetyltrans 1.0 1 1 16.0 -0.7 15 1174-1188 180-194 (278)
9 3fbx_A Putative phospholipase 1.0 1 1 15.5 0.7 16 1211-1226 531-546 (559)
10 3qds_A Boletus edulis lectin; 1.0 1 1 15.1 -3.3 7 160-166 73-79 (143)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=29.66 Aligned_cols=134 Identities=15% Similarity=0.110 Sum_probs=79.3
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCC-----CCCCCCCCCC
Q ss_conf 89865732123220232200015663021999983433699885206999964740222010166-----2000011112
Q 000273 1115 EGKPENQNHAIIFTRGEAIQTIDMNQDNYLEEAMKMRNLLEEFRTDHGIRPPSILGVREHVFTGS-----VSSLAWFMSN 1189 (1741)
Q Consensus 1115 EGKPENQNhAiIFtRGE~lQtIDmNQDnYlEEalKmrnlL~ef~~~~g~~~~tIlG~REhIFTg~-----v~~La~f~a~ 1189 (1741)
.||+.|.|+++--++||++-.+|..--- -.++++ .+++.+++++ .+.+++.+-.+..++ .+...... .
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~~~-~pd~L~--~lv~~~~~dp---~v~~V~~~~~~~~~~~~~~~~~~~~~~~-~ 296 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADHVP-SRDFLA--RTVGYFVEDP---DLFLVQTPHFFINPDPIQRNLALGDRCP-P 296 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTEEE-CTTHHH--HHHHHHHHSS---SCCEEECCCCBSSCCHHHHHHTCCTTSC-C
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHH--HHHHHHHCCC---CEEEEECCEEEECCCHHHHHHHHHHHHH-H
T ss_conf 7636899999996599999999999881-858999--9999984099---8599965679767855765444776516-7
Q ss_pred CHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 11367777667411665100003798332210112368633221001240333100000025731003532
Q 000273 1190 QETSFVTLGQRVLANPLKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIYAGFNSTLRQGNVTHHEY 1260 (1741)
Q Consensus 1190 qE~sFvTl~qRvLA~Pl~vR~HYGHPDvfdr~F~~TRGGiSKAsk~inLSEDIfaG~N~tlRgG~ith~EY 1260 (1741)
....|-...++.... .....--|+-=++.|-....-||.... .++||..-++....+|.++.++.-
T Consensus 297 ~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~~----~~~ED~~l~~rl~~~G~ri~~~~~ 362 (802)
T 4hg6_A 297 ENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAGE----TITEDAETALEIHSRGWKSLYIDR 362 (802)
T ss_dssp TTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCCS----SSSHHHHHHHHHHTTTCCEEECCC
T ss_pred HHHHHHHHHHHHHHH-CCCCEECCCCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHHHCCCEEEEECC
T ss_conf 899998888754764-388454266403249999970886788----803099999999976995999368
No 2
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=19.30 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHCCCCCCCCHHHHCCCCCC
Q ss_conf 201347999851023346781101012477
Q 000273 640 IFSPFWNEIIKSLREEDFISNREMDLLSIP 669 (1741)
Q Consensus 640 ~fa~iWNeII~S~r~EdLis~rE~~lL~~p 669 (1741)
+...+||+||..||....|-||...+=.++
T Consensus 9 ~at~lw~~ii~~~~~g~~ikdrr~~lk~y~ 38 (105)
T 2ysr_A 9 RATKLWNEVTTSFRAGMPLRKHRQHFKKYG 38 (105)
T ss_dssp HHHHHHHHHHHHHHHSCSCCCCCCSSSSCS
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCEECC
T ss_conf 178999999999975997532346889988
No 3
>3fgr_B Putative phospholipase B-like 2 40 kDa form; alpha beta, glycosylated, disulphide bonds, N-terminal nucle hydrolase fold, two chain form; HET: NAG; 1.80A {Mus musculus} PDB: 3fgt_B*
Probab=1.00 E-value=1 Score=17.66 Aligned_cols=15 Identities=27% Similarity=0.394 Sum_probs=12.0
Q ss_pred EECCCCCCCCCCCCC
Q ss_conf 003798332210112
Q 000273 1210 MHYGHPDVFDRIFHI 1224 (1741)
Q Consensus 1210 ~HYGHPDvfdr~F~~ 1224 (1741)
.|+||||+||=-|..
T Consensus 328 ~H~G~Pd~~~F~~v~ 342 (357)
T 3fgr_B 328 LHMGQPDLWMFSPIR 342 (357)
T ss_dssp CCTTCCSEECCCCEE
T ss_pred CCCCCCCCCCCCCEE
T ss_conf 969988672777789
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=16.22 Aligned_cols=189 Identities=16% Similarity=0.127 Sum_probs=86.3
Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHH-HHCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEC-CCCCCCCEEEEEEC
Q ss_conf 455499976523557968860118799998-7296718886033346546998541478765402-67886211588643
Q 000273 1030 LKFTYVVSCQIYGQQKQRKAPEAADIALLL-QRNEALRVAFIHVEDSSAADGKVSKEFFSKLVKA-DIHGKDQEIYSIRL 1107 (1741)
Q Consensus 1030 ~KFtyVVscQ~Yg~~k~~~~~~A~dI~~Lm-~~~p~LrVAYide~~~~~~~g~~~~~yySvLvk~-~~~g~~~eiYRikL 1107 (1741)
.+.+-|+.+ |. .+ +.-.+-|+-++ +.||+..|--||.-. .++..+ .++. ..+.....+ +.
T Consensus 375 ~~vsiii~~--yn---~~-~~l~~~l~s~~~q~~~~~eiivvdd~S---~d~t~~------~~~~~~~~~~~i~~--~~- 436 (625)
T 2z86_A 375 PLVSIYIPA--YN---CS-KYIVRCVESALNQTITDLEVCICDDGS---TDDTLR------ILQEHYANHPRVRF--IS- 436 (625)
T ss_dssp CSEEEEEEE--SS---CT-TTHHHHHHHHHSSSCCSEEEEEEEESC---SSSHHH------HHHHHHTTCTTEEE--EE-
T ss_pred CEEEEEEEC--CC---CH-HHHHHHHHHHHHCCCCCEEEEEEECCC---CHHHHH------HHHHHHHHCCCEEE--EE-
T ss_conf 717999957--89---88-999999999981769982899998969---864999------99998854993899--91-
Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCCCCCCCCC
Q ss_conf 8998568898657321232202322000156630219-999834336998852069999647402220101662000011
Q 000273 1108 PGDPKLGEGKPENQNHAIIFTRGEAIQTIDMNQDNYL-EEAMKMRNLLEEFRTDHGIRPPSILGVREHVFTGSVSSLAWF 1186 (1741)
Q Consensus 1108 PG~pilGEGKPENQNhAiIFtRGE~lQtIDmNQDnYl-EEalKmrnlL~ef~~~~g~~~~tIlG~REhIFTg~v~~La~f 1186 (1741)
+.| .|+..+-|.++-..+||++-.+|. |..+ +++| ..+++.+++++ .+.+++.....+..+-..+...
T Consensus 437 ~~n----~G~~~a~n~g~~~a~g~~i~~ld~--D~~~~~~~l--~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~ 505 (625)
T 2z86_A 437 QKN----KGIGSASNTAVRLCRGFYIGQLDS--DDFLEPDAV--ELCLDEFRKDL---SLACVYTTNRNIDREGNLISNG 505 (625)
T ss_dssp ECC----CCHHHHHHHHHHHCCSSEEEECCT--TCEECTTHH--HHHHHHHHHCT---TCSEEEEEEEEECTTSCEEEEC
T ss_pred CCC----CCHHHHHHHHHHHCCCCEEEEECC--CCCCCHHHH--HHHHHHHHHCC---CEEEEEEEEEEECCCCCEECCC
T ss_conf 798----898999999998567787999889--766283599--99999998479---8139982048987999874167
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 11211367777667411665100003798332210112368633221001240333100000025731003532
Q 000273 1187 MSNQETSFVTLGQRVLANPLKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIYAGFNSTLRQGNVTHHEY 1260 (1741)
Q Consensus 1187 ~a~qE~sFvTl~qRvLA~Pl~vR~HYGHPDvfdr~F~~TRGGiSKAsk~inLSEDIfaG~N~tlRgG~ith~EY 1260 (1741)
......+- .. +...+-.||.=++.|-....-||....- ...||.--.......| ++.+..-
T Consensus 506 ~~~~~~~~----~~-----~~~~~~~~~~~~~~r~~~~~~ggfd~~~---~~~eD~dl~~r~~~~g-~~~~~~~ 566 (625)
T 2z86_A 506 YNWPIYSR----EK-----LTSAMICHHFRMFTARAWNLTEGFNESI---SNAVDYDMYLKLSEVG-PFKHINK 566 (625)
T ss_dssp CCCSSCCH----HH-----HTTSCCCCSCEEEEHHHHTTTTCCCSSC---SSCHHHHHHHHHTTTS-CEEEEEE
T ss_pred CCCCCCCH----HH-----HHHCCCCCCEEEEEHHHHHHHCCCCCCC---CCHHHHHHHHHHHHHC-CEEEECC
T ss_conf 66665788----89-----8535467746898899999728999736---8727999999999749-9998287
No 5
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=1.00 E-value=1 Score=16.09 Aligned_cols=16 Identities=6% Similarity=-0.197 Sum_probs=8.3
Q ss_pred EEECCCCCCCCCCCCC
Q ss_conf 0101662000011112
Q 000273 1174 HVFTGSVSSLAWFMSN 1189 (1741)
Q Consensus 1174 hIFTg~v~~La~f~a~ 1189 (1741)
|-|+..--..+||...
T Consensus 177 Y~F~~~~~~~~Df~~~ 192 (278)
T 2bsz_A 177 YRFDLQPQYEVDYSVT 192 (278)
T ss_dssp EEECCCCBCHHHHHHH
T ss_pred EEEECCCCCHHHHHHH
T ss_conf 9985776689999999
No 6
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=1.00 E-value=1 Score=16.08 Aligned_cols=15 Identities=7% Similarity=-0.130 Sum_probs=7.4
Q ss_pred EEECCCCCCCCCCCC
Q ss_conf 010166200001111
Q 000273 1174 HVFTGSVSSLAWFMS 1188 (1741)
Q Consensus 1174 hIFTg~v~~La~f~a 1188 (1741)
|-|+..--..+||..
T Consensus 177 Y~F~~~~~~~~Df~~ 191 (280)
T 2vfb_A 177 YEFSTLTRPQVDLRV 191 (280)
T ss_dssp EEECCSCCCHHHHHH
T ss_pred EEEECCCCCHHHHHH
T ss_conf 999577578899999
No 7
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=1.00 E-value=1 Score=16.00 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHCC-HHHHHHHHHHCCCCCCCCCCCCCCC-----CHHHHHHHHHHCCC------CCCCCCCCCCCCHHH
Q ss_conf 96229999986295-1466499982689989886643588-----10244443233044------300001111003799
Q 000273 922 DGISILFYLQKIFP-DEWENFLERIGRGESAGGVDLQENS-----TDSLELRFWASYRG------QTLARTVRGMMYYRR 989 (1741)
Q Consensus 922 dgvsiL~YLq~iyP-dEW~NFleR~~~~~~~~~~~~~~~~-----~~~lelRlWAS~Rg------QTL~RTVrGmMyY~~ 989 (1741)
+.-.+|+..-..-| .+|+.|+.++|..+.+-|+-....+ ..-.=||.|---.| +||..+-+-|=--.-
T Consensus 11 ~~~~~l~~i~d~v~~~~WK~~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l~~~ 90 (112)
T 1ich_A 11 DDPATLYAVVENVPPLRWKEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLLGC 90 (112)
T ss_dssp --CHHHHHHHHHSCSTTHHHHHHHHTCCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHH
T ss_conf 24599999999678999999999919988899999987768759999999999998648887749999999998262779
Q ss_pred HHHHHHHHCCCC
Q ss_conf 998866220499
Q 000273 990 ALMLQSYLERRP 1001 (1741)
Q Consensus 990 ALkLl~~lE~~~ 1001 (1741)
|-+++..++.+.
T Consensus 91 ae~Ie~~l~~~~ 102 (112)
T 1ich_A 91 LEDIEEALCGPA 102 (112)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHCCC
T ss_conf 999999985334
No 8
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=1.00 E-value=1 Score=15.99 Aligned_cols=15 Identities=13% Similarity=-0.095 Sum_probs=7.3
Q ss_pred EEECCCCCCCCCCCC
Q ss_conf 010166200001111
Q 000273 1174 HVFTGSVSSLAWFMS 1188 (1741)
Q Consensus 1174 hIFTg~v~~La~f~a 1188 (1741)
|-|+..--...||..
T Consensus 180 Y~F~~~~~~~~D~~~ 194 (278)
T 1w5r_A 180 YTFTTEPRPRIDLEV 194 (278)
T ss_dssp EEECCCCCCHHHHHH
T ss_pred EEEECCCCCHHHHHH
T ss_conf 999567578899999
No 9
>3fbx_A Putative phospholipase B-like 2; alpha beta, glycosylated, disulphide bonds, oxidized cystein glycoprotein, hydrolase, lipid degradation, lysosome; HET: NAG PG4 PGE; 2.40A {Mus musculus} PDB: 3fgw_A*
Probab=1.00 E-value=1 Score=15.48 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=0.0
Q ss_pred ECCCCCCCCCCCCCCC
Q ss_conf 0379833221011236
Q 000273 1211 HYGHPDVFDRIFHITR 1226 (1741)
Q Consensus 1211 HYGHPDvfdr~F~~TR 1226 (1741)
|+||||+||=-|...+
T Consensus 531 H~G~Pd~~nF~~v~~~ 546 (559)
T 3fbx_A 531 HMGQPDLWMFSPIRVP 546 (559)
T ss_dssp CTTCCSEECCCCEEEC
T ss_pred CCCCCCCCCCCCEEEE
T ss_conf 7999967277878987
No 10
>3qds_A Boletus edulis lectin; mushroom, T-antigen, carbohydrate, S binding, sugar binding protein; 1.15A {Boletus edulis} SCOP: b.97.1.2 PDB: 3qdt_A* 3qdu_A* 3qdv_A* 3qdw_A* 3qdx_A* 3qdy_A* 1x99_A* 1xi0_A
Probab=1.00 E-value=1 Score=15.13 Aligned_cols=7 Identities=57% Similarity=1.825 Sum_probs=0.0
Q ss_pred HHHHHHH
Q ss_conf 2999987
Q 000273 160 NYIKWCK 166 (1741)
Q Consensus 160 NYkkWC~ 166 (1741)
|||+||+
T Consensus 73 NYk~WcD 79 (143)
T 3qds_A 73 NYKRWCD 79 (143)
T ss_dssp TTEEEEE
T ss_pred CCCCCEE
T ss_conf 5873214
Done!