Query 000273
Match_columns 1741
No_of_seqs 237 out of 377
Neff 4.8
Searched_HMMs 13730
Date Tue Mar 26 17:45:01 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000273.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_51-55//hhsearch_scop/000273hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 5.6 61 0.0044 5.9 1.7 35 1115-1149 93-130 (328)
2 d2gl5a1 c.1.11.2 (A:123-400) P 4.8 75 0.0054 5.3 0.3 105 1052-1184 107-212 (278)
3 d2yrka1 g.37.1.4 (A:8-55) Zinc 3.5 66 0.0048 5.7 -1.1 13 1165-1177 16-28 (48)
4 d1r9wa_ d.89.1.2 (A:) Replicat 3.2 1.2E+02 0.0089 3.7 1.0 14 791-804 85-98 (145)
5 d1w4ta1 d.3.1.5 (A:1-277) Aryl 2.6 1.6E+02 0.012 2.8 0.6 88 1210-1297 47-157 (277)
6 d2h1ia1 c.69.1.14 (A:1-202) Ca 2.5 1.6E+02 0.012 2.7 1.0 50 61-110 150-202 (202)
7 d1wlna1 b.26.1.2 (A:8-114) Afa 2.3 1.8E+02 0.013 2.4 2.5 60 1082-1142 1-73 (107)
8 d1dfma_ c.52.1.5 (A:) Restrict 2.3 1.8E+02 0.013 2.3 3.2 53 1117-1173 120-172 (223)
9 d2p62a1 e.67.1.1 (A:1-241) Hyp 2.3 1.8E+02 0.013 2.3 1.9 110 1106-1220 32-149 (241)
10 d1n0ua4 d.58.11.1 (A:482-560) 2.3 1.9E+02 0.014 2.3 2.2 41 1031-1072 1-43 (79)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.60 E-value=61 Score=5.94 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=26.0
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCC---CCCHHHHHHH
Q ss_conf 8986573212322023220001566---3021999983
Q 000273 1115 EGKPENQNHAIIFTRGEAIQTIDMN---QDNYLEEAMK 1149 (1741)
Q Consensus 1115 EGKPENQNhAiIFtRGE~lQtIDmN---QDnYlEEalK 1149 (1741)
-|.+...|.++--++||+|-.+|.- ..+++|+.++
T Consensus 93 ~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~ 130 (328)
T d1xhba2 93 SGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLA 130 (328)
T ss_dssp CCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 32168878999863110022017655667369999999
No 2
>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]}
Probab=4.76 E-value=75 Score=5.27 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=55.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 18799998729671888603334654699854147876540267886211588643899856889865732123220232
Q 000273 1052 AADIALLLQRNEALRVAFIHVEDSSAADGKVSKEFFSKLVKADIHGKDQEIYSIRLPGDPKLGEGKPENQNHAIIFTRGE 1131 (1741)
Q Consensus 1052 A~dI~~Lm~~~p~LrVAYide~~~~~~~g~~~~~yySvLvk~~~~g~~~eiYRikLPG~pilGEGKPENQNhAiIFtRGE 1131 (1741)
.++-..++++-..+.+.+++|.- .... ..-|..| |=+++-|...||.-..-+...-....|-
T Consensus 107 ~~~Ai~~~~~L~~~~l~wiEePi---~~~d--~~~~~~L-------------~~~~~ipIa~gE~~~~~~~~~~~i~~~a 168 (278)
T d2gl5a1 107 TNSAIQFAKAIEKYRIFLYEEPI---HPLN--SDNMQKV-------------SRSTTIPIATGERSYTRWGYRELLEKQS 168 (278)
T ss_dssp HHHHHHHHHHHGGGCEEEEECSS---CSSC--HHHHHHH-------------HHHCSSCEEECTTCCTTHHHHHHHHTTC
T ss_pred CHHHHHHHHHHCCCCCCEECCCC---CCCC--HHHHHHH-------------CCCCCCCEECCCCCCCHHHHHHHHCCCC
T ss_conf 11567788775134321003663---2235--3555430-------------1032453322555478578765420354
Q ss_pred C-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCCCCCCC
Q ss_conf 2-0001566302199998343369988520699996474022201016620000
Q 000273 1132 A-IQTIDMNQDNYLEEAMKMRNLLEEFRTDHGIRPPSILGVREHVFTGSVSSLA 1184 (1741)
Q Consensus 1132 ~-lQtIDmNQDnYlEEalKmrnlL~ef~~~~g~~~~tIlG~REhIFTg~v~~La 1184 (1741)
. +=-+|...-+=+-|++|+.++.+++. . ++++ |-+.+.++..|
T Consensus 169 ~di~~~d~~~~GGit~~~kia~la~~~g----i-~v~~-----H~~~~~i~~~a 212 (278)
T d2gl5a1 169 IAVAQPDLCLCGGITEGKKICDYANIYD----T-TVQV-----HVCGGPVSTVA 212 (278)
T ss_dssp CSEECCCTTTTTHHHHHHHHHHHHHTTT----C-EECC-----CCCSSHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHC----C-CCCC-----CCCCCCHHHHH
T ss_conf 1267531210056366777654554403----3-4456-----56667501100
No 3
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.49 E-value=66 Score=5.68 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=7.1
Q ss_pred CCEEEECCCEEEC
Q ss_conf 9647402220101
Q 000273 1165 PPSILGVREHVFT 1177 (1741)
Q Consensus 1165 ~~tIlG~REhIFT 1177 (1741)
.-+=+-+|+||||
T Consensus 16 Ys~~~SvrdHiFs 28 (48)
T d2yrka1 16 YSARLSIRDHIFS 28 (48)
T ss_dssp CCSSSCHHHHHTS
T ss_pred EEEECCHHHHHHH
T ss_conf 3010216766522
No 4
>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human papillomavirus type 18 [TaxId: 333761]}
Probab=3.20 E-value=1.2e+02 Score=3.67 Aligned_cols=14 Identities=36% Similarity=0.273 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 87899999999999
Q 000273 791 AKGAAKALFQLYEV 804 (1741)
Q Consensus 791 ~~~~v~~l~~l~e~ 804 (1741)
++.+.+.+..++.+
T Consensus 85 ReTV~kLl~~ll~v 98 (145)
T d1r9wa_ 85 RLTVAKGLSTLLHV 98 (145)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCC
T ss_conf 89999999986097
No 5
>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.56 E-value=1.6e+02 Score=2.78 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred EECCCC------CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCE-------------EEEEE-EEECCCC--
Q ss_conf 003798------3322101123686332210012403331000000257310-------------03532-7724643--
Q 000273 1210 MHYGHP------DVFDRIFHITRGGISKASRVINISEDIYAGFNSTLRQGNV-------------THHEY-IQVGKGR-- 1267 (1741)
Q Consensus 1210 ~HYGHP------Dvfdr~F~~TRGGiSKAsk~inLSEDIfaG~N~tlRgG~i-------------th~EY-iQvGKGR-- 1267 (1741)
.|+|+| ++|+|+-.--|||..=-.-++=-.==-=-||++++-+|+| +|.-- ++++.++
T Consensus 47 ~~~g~~i~ld~~~l~~kiV~~~rGGyC~E~N~Lf~~lL~~LGf~v~~~~arV~~~~~~~~~~~~~~H~~l~V~i~~~~yl 126 (277)
T d1w4ta1 47 VLLDRPIEIDADKVFAKVVEGSRGGYCFELNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAEGEFL 126 (277)
T ss_dssp HHTTCCCCCSHHHHHHHHTTTTCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEETTEEEE
T ss_pred HHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEE
T ss_conf 32399877999999999986577723451569999999986980699889997368888888887418999998990699
Q ss_pred -CCCCCCCCCCEECCCCCCCCCCCHHHHHHC
Q ss_conf -458531111100014776542111456720
Q 000273 1268 -DVGLNQIALFEGKVAGGNGEQVLSRDVYRL 1297 (1741)
Q Consensus 1268 -DvGlnqI~~FeaKIa~GnGEQ~LSRd~yrL 1297 (1741)
||||+.-...+.=--.+-.+|.--.+.||+
T Consensus 127 vDvGfG~~~~~~Pl~l~~~~~~~~~~~~~r~ 157 (277)
T d1w4ta1 127 VDVGFGSANPPRALPLPGDEADAGQVHCVRL 157 (277)
T ss_dssp ECSCSGGGCCSSCEESSCCTTCTTCSEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 8403677685646237887531367517999
No 6
>d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]}
Probab=2.49 E-value=1.6e+02 Score=2.68 Aligned_cols=50 Identities=6% Similarity=-0.005 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCC---CCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 742311358005899999871199---99999666788885223999999874
Q 000273 61 SLTNAIGFFPEVRGAISAIRYSEQ---FPRLPADFEISGQRDADMFDLLEYVF 110 (1741)
Q Consensus 61 ~~~~~i~~~pev~aA~~al~~~~~---lp~~~~~~~~~~~~~~Difd~L~~~F 110 (1741)
|.+-++.-..+.+....+|+...- +-..|.+++++.+.+.++.+||+..|
T Consensus 150 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ggH~~~~~~~~~~~~wl~k~f 202 (202)
T d2h1ia1 150 GTNDPICSSAESEELKVLLENANANVTMHWENRGHQLTMGEVEKAKEWYDKAF 202 (202)
T ss_dssp ESSCSSSCHHHHHHHHHHHHTTTCEEEEEEESSTTSCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 36888549999999999999789987999989999689999999999999749
No 7
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.29 E-value=1.8e+02 Score=2.35 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCCEEEEEEEECCCC--CCCCEEEEEECCCCCCCCCCCCCC-----------CCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 541478765402678--862115886438998568898657-----------3212322023220001566302
Q 000273 1082 VSKEFFSKLVKADIH--GKDQEIYSIRLPGDPKLGEGKPEN-----------QNHAIIFTRGEAIQTIDMNQDN 1142 (1741)
Q Consensus 1082 ~~~~yySvLvk~~~~--g~~~eiYRikLPG~pilGEGKPEN-----------QNhAiIFtRGE~lQtIDmNQDn 1142 (1741)
.++.=|=+.+..|+. +....+|+++ +|...+|-|+++. ..||.|-..++.+...|.+..|
T Consensus 1 p~~~P~Ll~l~~dg~~~~~~~~~~~l~-~~~~~iG~~rs~~~dI~L~~~~Vs~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 1 PEKLPYLVELSPDGSDSRDKPKLYRLQ-LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp GGGCCEEEEECSSSCCCSSCCCEEECC-SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESSSCEEEEESCSSS
T ss_pred CCCCCEEEEECCCCCCCCCCCEEEEEC-CCCEEECCCCCCCCCEEECCCCEEEEEEEEEECCCCCEEECCCCCC
T ss_conf 987788999889866688864899979-9987999987899849989965332199999724631995278886
No 8
>d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]}
Probab=2.29 E-value=1.8e+02 Score=2.34 Aligned_cols=53 Identities=30% Similarity=0.357 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 865732123220232200015663021999983433699885206999964740222
Q 000273 1117 KPENQNHAIIFTRGEAIQTIDMNQDNYLEEAMKMRNLLEEFRTDHGIRPPSILGVRE 1173 (1741)
Q Consensus 1117 KPENQNhAiIFtRGE~lQtIDmNQDnYlEEalKmrnlL~ef~~~~g~~~~tIlG~RE 1173 (1741)
|.++-|-+||=|.| .+-+--|-|+|+|.+---=+-|.+..-.+ -|+.|||.-|
T Consensus 120 ~~~~t~~~Ii~tk~--~~~~asn~~~y~e~~~~~L~~l~~~~v~d--vPi~~~gi~e 172 (223)
T d1dfma_ 120 DEEGMKVAIIITKG--HMFPASNSSLYYEQAQNQLNSLAEYNVFD--VPIRLVGLIE 172 (223)
T ss_dssp SSSBCCEEEEEEEC--TTSCCSTTBCCHHHHHHHHHHHHHTTCCC--SCEEEEEEEC
T ss_pred CCCCCCEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCC--CCEEEEEECC
T ss_conf 02466569999624--34203461479999999998627363234--5555566057
No 9
>d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.27 E-value=1.8e+02 Score=2.31 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred ECCCCCCCCCCCCCCCCCHH-HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCC-----
Q ss_conf 43899856889865732123-220232200015663021999983433699885206999964740222010166-----
Q 000273 1106 RLPGDPKLGEGKPENQNHAI-IFTRGEAIQTIDMNQDNYLEEAMKMRNLLEEFRTDHGIRPPSILGVREHVFTGS----- 1179 (1741)
Q Consensus 1106 kLPG~pilGEGKPENQNhAi-IFtRGE~lQtIDmNQDnYlEEalKmrnlL~ef~~~~g~~~~tIlG~REhIFTg~----- 1179 (1741)
++|-+.+++|+++|--||++ -=.-|-+|-.|-.+-..-.--+|+ |.|.-.+- +.-.|.++|+---|=+++
T Consensus 32 ~~~~~~~~ie~~fer~~~~l~le~d~v~LaVi~seGns~v~rnL~--n~l~Am~v--~~~~v~~iGvA~DvDe~~ev~~~ 107 (241)
T d2p62a1 32 KLTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLK--SVLDSVKL--GLLNVEEVYVVRDVDEGNDVFEW 107 (241)
T ss_dssp SCCCCCCHHHHCCCTTCCCEEEEETTEEEEEECSCCTTTHHHHHH--HHHHHHHH--TCCCEEEEEEEEESSSSSCHHHH
T ss_pred CCCCCCCHHHHHCCCCCCCCEEECCCEEEEEEECCCCCHHHHHHH--HHHHHHHH--HCCCHHEEEEEEECCCCHHHHHH
T ss_conf 489766114432355663313433885899984788413778999--99999997--44461116888743760788999
Q ss_pred -CCCCCCCCCCCHHHHHHHHHHHHCCCCCEE-EECCCCCCCCC
Q ss_conf -200001111211367777667411665100-00379833221
Q 000273 1180 -VSSLAWFMSNQETSFVTLGQRVLANPLKVR-MHYGHPDVFDR 1220 (1741)
Q Consensus 1180 -v~~La~f~a~qE~sFvTl~qRvLA~Pl~vR-~HYGHPDvfdr 1220 (1741)
.|.|..+....+..|-..+ -+-.-|+.+- .+.++|++.-+
T Consensus 108 ~~s~l~~~e~~~~~g~~~~~-~~~i~pl~Ig~~~~~~p~~~~K 149 (241)
T d2p62a1 108 VLSFLREREVRVDNGAIVTE-GVKIYPYGMGNLTLNEPFVKEK 149 (241)
T ss_dssp HHTTCTTCCCEEETTEEEET-TEEEEEEEECCSCCCCTTBCCC
T ss_pred HHHHHHCCCCCCCCCEEEEC-CEEEEEEEECCCCCCCCHHHHC
T ss_conf 99986236754467728974-6699997633646686146542
No 10
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.25 E-value=1.9e+02 Score=2.28 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCCE--EEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5549--99765235579688601187999987296718886033
Q 000273 1031 KFTY--VVSCQIYGQQKQRKAPEAADIALLLQRNEALRVAFIHV 1072 (1741)
Q Consensus 1031 KFty--VVscQ~Yg~~k~~~~~~A~dI~~Lm~~~p~LrVAYide 1072 (1741)
||+- |+++-++.+.+.+.+.=.+.+..|.+..|+++| +.+|
T Consensus 1 k~~~~Pv~~~aiep~~~~d~~kL~~aL~kl~~eDpsl~v-~~~e 43 (79)
T d1n0ua4 1 KFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLT-YMSE 43 (79)
T ss_dssp CCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEE-EECT
T ss_pred CCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEE-EECC
T ss_conf 988897799999989887999999999999975995799-8748
Done!