Query 000274
Match_columns 1739
No_of_seqs 448 out of 1154
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03076 ARF guanine nucleotid 100.0 6E-298 1E-302 2939.5 142.0 1561 2-1736 9-1741(1780)
2 KOG0929 Guanine nucleotide exc 100.0 2E-257 4E-262 2445.8 90.3 1463 5-1735 1-1505(1514)
3 KOG0928 Pattern-formation prot 100.0 1E-115 3E-120 1103.9 96.4 1185 86-1369 42-1327(1386)
4 COG5307 SEC7 domain proteins [ 100.0 2.5E-86 5.5E-91 854.7 35.0 933 351-1391 2-1023(1024)
5 KOG1848 Uncharacterized conser 100.0 3E-64 6.4E-69 632.9 59.9 980 5-1369 9-1133(1610)
6 KOG0930 Guanine nucleotide exc 100.0 4.5E-50 9.8E-55 436.8 14.8 194 583-776 57-250 (395)
7 cd00171 Sec7 Sec7 domain; Doma 100.0 1.5E-47 3.3E-52 421.0 20.9 183 587-769 1-185 (185)
8 PF01369 Sec7: Sec7 domain; I 100.0 3.5E-47 7.6E-52 420.8 18.8 185 585-769 2-190 (190)
9 smart00222 Sec7 Sec7 domain. D 100.0 8.4E-47 1.8E-51 416.3 21.0 183 587-769 2-187 (187)
10 KOG1846 Uncharacterized conser 100.0 3.8E-43 8.1E-48 420.7 51.9 877 684-1638 404-1565(1777)
11 KOG0931 Predicted guanine nucl 100.0 7.2E-45 1.6E-49 416.8 13.8 190 586-775 196-391 (627)
12 PF12783 Sec7_N: Guanine nucle 100.0 8.2E-32 1.8E-36 293.4 16.3 155 340-494 2-168 (168)
13 KOG0932 Guanine nucleotide exc 99.9 3.9E-26 8.4E-31 268.6 14.1 156 619-774 307-462 (774)
14 PF09324 DUF1981: Domain of un 99.8 9.4E-22 2E-26 190.5 5.2 86 1078-1163 1-86 (86)
15 PLN03076 ARF guanine nucleotid 97.5 0.02 4.3E-07 81.8 28.7 44 1095-1139 1348-1392(1780)
16 KOG2171 Karyopherin (importin) 94.3 9.9 0.00021 52.2 26.4 140 1237-1391 115-257 (1075)
17 KOG2171 Karyopherin (importin) 94.2 6.3 0.00014 54.0 24.4 297 1047-1381 116-431 (1075)
18 PF01602 Adaptin_N: Adaptin N 94.1 16 0.00035 47.3 28.0 127 1020-1163 53-179 (526)
19 KOG2023 Nuclear transport rece 90.8 41 0.00089 44.1 23.5 321 1047-1395 126-531 (885)
20 PF01602 Adaptin_N: Adaptin N 90.7 64 0.0014 41.8 36.7 297 998-1371 188-486 (526)
21 KOG1241 Karyopherin (importin) 89.9 21 0.00045 47.3 20.3 256 1058-1362 10-282 (859)
22 KOG1824 TATA-binding protein-i 88.7 51 0.0011 44.9 22.6 175 1187-1392 528-704 (1233)
23 PF12348 CLASP_N: CLASP N term 85.6 28 0.00062 39.9 16.9 144 1185-1369 57-207 (228)
24 PF12348 CLASP_N: CLASP N term 84.4 61 0.0013 37.2 18.9 180 1021-1212 24-210 (228)
25 KOG1248 Uncharacterized conser 83.3 2.2E+02 0.0048 40.2 26.0 259 1094-1395 96-383 (1176)
26 PF11864 DUF3384: Domain of un 82.4 1.2E+02 0.0026 39.2 22.1 141 1241-1391 302-445 (464)
27 PF08767 CRM1_C: CRM1 C termin 81.5 30 0.00066 42.4 15.5 161 1076-1251 50-225 (319)
28 KOG0166 Karyopherin (importin) 80.0 86 0.0019 40.7 19.0 274 1053-1369 156-437 (514)
29 PF12717 Cnd1: non-SMC mitotic 79.2 17 0.00037 40.5 11.5 110 1062-1185 1-112 (178)
30 PF12719 Cnd3: Nuclear condens 77.6 45 0.00098 40.3 15.3 65 1253-1328 77-144 (298)
31 PF14500 MMS19_N: Dos2-interac 76.6 52 0.0011 39.3 15.0 211 1048-1291 41-259 (262)
32 KOG1077 Vesicle coat complex A 76.2 70 0.0015 42.4 16.4 62 1058-1125 338-399 (938)
33 PF10508 Proteasom_PSMB: Prote 75.9 2.5E+02 0.0055 36.7 22.3 262 1062-1366 51-317 (503)
34 KOG2023 Nuclear transport rece 73.8 2.6E+02 0.0056 37.3 20.3 102 1048-1158 173-278 (885)
35 KOG1062 Vesicle coat complex A 69.8 4.1E+02 0.009 36.2 21.5 133 1107-1271 246-381 (866)
36 PF11640 TAN: Telomere-length 69.7 51 0.0011 36.1 11.9 130 1248-1380 12-154 (155)
37 KOG0929 Guanine nucleotide exc 69.0 2E+02 0.0042 42.0 19.4 229 1037-1294 1063-1322(1514)
38 KOG2956 CLIP-associating prote 68.5 78 0.0017 40.3 14.0 144 1242-1400 289-444 (516)
39 KOG1848 Uncharacterized conser 67.9 1.9E+02 0.0042 41.3 18.5 224 919-1167 862-1134(1610)
40 PF12717 Cnd1: non-SMC mitotic 65.5 36 0.00077 38.0 9.8 93 1253-1369 1-93 (178)
41 PF03378 CAS_CSE1: CAS/CSE pro 65.1 4E+02 0.0087 34.3 22.4 98 1047-1146 69-169 (435)
42 KOG0212 Uncharacterized conser 64.4 4.5E+02 0.0097 34.6 27.2 77 1312-1392 350-426 (675)
43 PF12755 Vac14_Fab1_bd: Vacuol 63.7 1.1E+02 0.0024 31.0 11.9 94 1256-1368 2-96 (97)
44 cd00020 ARM Armadillo/beta-cat 63.0 60 0.0013 32.4 10.2 110 1242-1367 9-119 (120)
45 PF11864 DUF3384: Domain of un 62.9 4.5E+02 0.0097 34.1 25.2 204 1150-1397 148-360 (464)
46 KOG2956 CLIP-associating prote 61.3 4.2E+02 0.0091 34.2 18.3 196 1049-1277 287-486 (516)
47 cd00020 ARM Armadillo/beta-cat 60.5 21 0.00046 35.7 6.4 71 1052-1126 10-80 (120)
48 PF08427 DUF1741: Domain of un 60.1 3.4E+02 0.0074 32.1 16.6 176 1194-1388 32-227 (237)
49 KOG1824 TATA-binding protein-i 59.4 6.8E+02 0.015 35.0 24.3 168 1102-1351 577-750 (1233)
50 KOG1242 Protein containing ada 55.3 6.4E+02 0.014 33.5 25.5 215 1105-1369 106-325 (569)
51 PF02985 HEAT: HEAT repeat; I 52.8 23 0.0005 27.9 4.0 28 1242-1269 2-29 (31)
52 PF08767 CRM1_C: CRM1 C termin 52.0 88 0.0019 38.4 10.8 111 1252-1372 83-198 (319)
53 PF12783 Sec7_N: Guanine nucle 49.6 2.9E+02 0.0063 30.4 13.5 82 1254-1346 36-121 (168)
54 PF12755 Vac14_Fab1_bd: Vacuol 47.8 89 0.0019 31.7 8.3 73 1091-1165 24-96 (97)
55 KOG0889 Histone acetyltransfer 47.6 1.7E+03 0.036 36.1 25.5 220 979-1209 543-797 (3550)
56 PRK09687 putative lyase; Provi 46.0 2.1E+02 0.0046 34.5 12.6 161 1053-1266 58-218 (280)
57 PTZ00429 beta-adaptin; Provisi 44.7 1E+03 0.023 32.9 24.3 265 1050-1388 257-526 (746)
58 KOG0212 Uncharacterized conser 43.9 4E+02 0.0086 35.1 14.5 182 1160-1369 24-238 (675)
59 KOG1991 Nuclear transport rece 42.7 1.2E+03 0.026 32.9 25.2 151 1108-1276 102-279 (1010)
60 PF04510 DUF577: Family of unk 39.0 6.2E+02 0.013 28.6 15.0 152 1178-1369 7-165 (174)
61 cd03568 VHS_STAM VHS domain fa 37.9 1.7E+02 0.0036 31.9 9.0 61 1058-1122 46-108 (144)
62 KOG1062 Vesicle coat complex A 36.2 8.8E+02 0.019 33.4 16.3 68 1099-1166 298-380 (866)
63 PF12460 MMS19_C: RNAPII trans 35.9 1E+03 0.022 30.3 31.1 133 1242-1388 273-413 (415)
64 PF12719 Cnd3: Nuclear condens 35.4 3.8E+02 0.0083 32.5 12.7 79 1048-1135 26-104 (298)
65 KOG1060 Vesicle coat complex A 34.3 1.4E+03 0.031 31.5 19.2 222 1060-1354 298-519 (968)
66 PF13513 HEAT_EZ: HEAT-like re 33.1 65 0.0014 28.4 4.2 53 1314-1366 3-55 (55)
67 PF04826 Arm_2: Armadillo-like 33.1 2.3E+02 0.0049 33.8 9.9 88 391-483 84-174 (254)
68 COG5215 KAP95 Karyopherin (imp 30.8 1.4E+03 0.031 30.4 21.1 251 1047-1384 37-292 (858)
69 KOG4535 HEAT and armadillo rep 30.4 7.5E+02 0.016 32.1 13.6 244 1106-1382 58-338 (728)
70 KOG1967 DNA repair/transcripti 29.9 2.9E+02 0.0063 38.1 10.8 162 1110-1293 142-308 (1030)
71 KOG0946 ER-Golgi vesicle-tethe 29.8 1.7E+03 0.036 30.9 19.6 159 1105-1284 33-210 (970)
72 KOG0211 Protein phosphatase 2A 25.5 1.8E+03 0.038 30.8 17.1 167 1064-1269 494-664 (759)
73 PF08623 TIP120: TATA-binding 25.1 5.4E+02 0.012 28.9 10.4 118 1251-1388 38-168 (169)
74 PF13646 HEAT_2: HEAT repeats; 24.7 1.4E+02 0.0031 28.4 5.3 70 1059-1153 10-79 (88)
75 KOG2032 Uncharacterized conser 24.3 1.7E+03 0.037 29.2 17.4 81 1192-1296 313-397 (533)
76 PRK09687 putative lyase; Provi 23.7 1E+03 0.022 28.7 13.4 160 1052-1267 26-186 (280)
77 PF02985 HEAT: HEAT repeat; I 22.9 1.4E+02 0.0031 23.4 4.0 28 1051-1078 2-29 (31)
78 PF05804 KAP: Kinesin-associat 22.7 2.1E+03 0.047 29.8 23.7 221 1054-1297 295-543 (708)
79 KOG1242 Protein containing ada 22.7 8.9E+02 0.019 32.2 13.0 109 1133-1266 213-321 (569)
80 KOG1992 Nuclear export recepto 22.6 1.6E+03 0.035 31.2 15.3 168 1236-1404 122-363 (960)
81 PF10274 ParcG: Parkin co-regu 22.3 86 0.0019 35.5 3.6 32 113-144 80-111 (183)
82 PF09324 DUF1981: Domain of un 22.3 5.6E+02 0.012 25.4 8.9 54 1312-1365 32-85 (86)
83 PF05004 IFRD: Interferon-rela 21.7 8.3E+02 0.018 30.0 12.2 108 1272-1391 29-139 (309)
84 PF01603 B56: Protein phosphat 21.4 8.8E+02 0.019 31.0 12.8 238 1110-1386 41-360 (409)
85 cd03561 VHS VHS domain family; 20.7 3.3E+02 0.0071 29.0 7.5 64 1060-1127 48-115 (133)
86 PLN03205 ATR interacting prote 20.2 1.6E+03 0.035 28.4 13.7 200 1093-1294 322-550 (652)
No 1
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=6e-298 Score=2939.53 Aligned_cols=1561 Identities=39% Similarity=0.624 Sum_probs=1259.1
Q ss_pred CcccccHHHHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCCCCCccccccccCCCCCCccccccccccccccccCcccc
Q 000274 2 AAGGFVSRAFESMLKECSGKKFPDLQKAIQTYLDNAKEVKPPASSETSEATASAGDGSSIETEAGAAEKGTEAVQLPAEQ 81 (1739)
Q Consensus 2 ~~~~~~~~ale~i~~~~~~kk~~~l~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1739)
+.++||++|||+|+++|+||||++|++||++||+.+|+...+..++ +.+ .. .+. +
T Consensus 9 ~~~~~~~~ale~i~~~k~~rk~~~l~~a~~~al~~l~~~~~~~~~~-~~~-----~~--~~~-----------------~ 63 (1780)
T PLN03076 9 RLGKVVSPALEKIIKNASWRKHSKLAHECKAVIERLNSPEKNPPST-SSA-----AA--DSA-----------------S 63 (1780)
T ss_pred hhhHHHHHHHHHHHhhHHhhccHHHHHHHHHHHHHHhccccccccc-ccc-----cc--ccc-----------------c
Confidence 3578999999999999999999999999999999999776532110 000 00 000 0
Q ss_pred ccccCcccccchhHHHHHhhhCCCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHHhhcCcccCCCCCCCCCCcchH
Q 000274 82 TEHIGKTVGVSGSVATALANAGHTLEAADAELVLNPLRLAIETKNLKLLESALDCLHKLIAYDHLEGDPGLNGGKNAPLF 161 (1739)
Q Consensus 82 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~d~~~if~Pf~lAc~sks~ki~~~ALdclqKLis~~~i~~~~~~~~~~~~~li 161 (1739)
+.+.++|+.+++. ..++.++|+.||.||++||+||++||+.+|||||||||+||||.|+.++.+++..++|
T Consensus 64 ~~~~~~~~~~~~~---------~~~~~~~~~~i~~pl~lac~s~~~ki~~~ALdcl~KLis~~~i~~~~~~~~~~~~~li 134 (1780)
T PLN03076 64 ASSLPGPLHDGGS---------IEYSLAESELILSPLINACGTGSAKIVDPALDCIQKLIAHGYLRGEADPSGGPEALLL 134 (1780)
T ss_pred ccccccccccccc---------ccccccCHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhcCCCCCCCCCccccHH
Confidence 0011334333221 1134569999999999999999999999999999999999999997765555667899
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHHHHhccccccccchhHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHHHhc
Q 000274 162 TDILNMVCGCVDNSSSDSTILQVLKVLLTAVASAKFRVHGEPLLGVIRVCYNISLNSKSPINQATSKAMLTQMVSIVVRR 241 (1739)
Q Consensus 162 ~~iv~tI~~c~~~~~~d~v~LQIlkaLlt~V~s~~~~vhg~~LlkaVrtcyni~l~Sks~~nq~tA~aTLtQmv~~VF~R 241 (1739)
+++|++||+|+++ ++|.|||||||+|+++|+++++.|||++||+|||||||||+.||+++||+||||||||||++||+|
T Consensus 135 d~~i~~Ic~c~~~-~de~iqLqilk~Ll~~v~s~~~~vhg~~LLkaVR~cyni~l~Sks~~nq~tA~atLtQmv~~VF~R 213 (1780)
T PLN03076 135 AKLIESVCKCHDL-GDEGIELLVLKTLLSAVTSTSLRIHGDCLLQAVRTCYDIYLGSKNVVNQTTAKASLIQMLVIVFRR 213 (1780)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHHHHHcCCCceeEHHHHHHHHHHhheeeecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999975 456699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCC--CcCcCCCCCcccccCCCCCCCCc------------------ccc-ccccc-CCCCCchh
Q 000274 242 MENDQVSTLPTSSGHTETS--SADDASRMPEETTLGDKNKDGMT------------------LGD-ALTQA-KDTPIASV 299 (1739)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------------~~~-~~~~~-~~~~~~~~ 299 (1739)
|+.+.......+....+.. ...+.+........+....+.+. ..+ ..... ......+.
T Consensus 214 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1780)
T PLN03076 214 MEADSSTVPIQPIVVAELMEPAEKSDSDTSMTQFVQGFITKIMQDIDGVLNPATAGKSSGSGAHDGAFETTATVETTNPA 293 (1780)
T ss_pred hhcccccccccccccccccccccccccccchhhhhhhhhhhhccccccccCcccccccccccccccccccccccCCCCcc
Confidence 9876532211111000000 00000000000000000000000 000 00000 00000000
Q ss_pred hhhhccCCC-Cccchhhh-hhhhhcc---cc--cCcc-cccCCcccccChhhhHHHHHHHHHHhccCCCCCc-----hhh
Q 000274 300 EELHNLAGG-ADIKGLEA-VLDKAVH---LE--DGKK-ITRGIDLESMSIGQQDALLVFRTLCKMGMKEDSD-----EVT 366 (1739)
Q Consensus 300 ~~~~~~~~~-~~~~~~~~-~~~~~~~---~~--~~~~-~~~~~~~~~~~~~~kDAflvFr~LCkLs~k~~~~-----~~~ 366 (1739)
+.+++.... .+...... +...+.. .+ ++.. ...+.++...++++||||+|||+|||||+|+.+. .+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~~~ 373 (1780)
T PLN03076 294 DLLDSTDKDMLDAKYWEISMYKSALEGRKGELADGEVEKDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQL 373 (1780)
T ss_pred hhhcccccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccHHH
Confidence 001000000 00000000 0000000 00 0000 0000111123679999999999999999998763 368
Q ss_pred hhhhHHHHHHHHHHHhcCCcccccChhhHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000274 367 TKTRILSLELLQGLLEGVSHSFTKNFHFIDSIKAYLSYALLRASVSQSSVIFQYATGIFSVLLLRFRESLKGEIGVFFPL 446 (1739)
Q Consensus 367 ~rsk~lsLeLl~~iL~~~~~~f~~~~~f~~~ik~~Lc~~Llrn~~S~~~~vF~lsl~If~~Ll~~~r~~Lk~Eievfl~~ 446 (1739)
+|+|++|||||+++|+++|++|.+|+.|+++||+|||.+|+||++|++++||+++|+|||+|+.+||.+||.||||||++
T Consensus 374 ~rsKllsL~Li~~ile~~g~~f~~~~~fi~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~R~~LK~eievF~~~ 453 (1780)
T PLN03076 374 MRGKILALELLKILLENAGAVFRTSDRFLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPM 453 (1780)
T ss_pred HHHHHHHHHHHHHHHhcccHhhhcCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCC---ChhhHHHHHHHHHHHhcChhHHHHHHHhcCCCCCCccHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 000274 447 IVLRSLDGS---DNNQKTSVLRMIDKVCKDPQMLVDVYVNYDCDLEAPNLFERMVTTLSKIAQGTQNTDPNSVMVSQTTT 523 (1739)
Q Consensus 447 i~l~~Le~s---~~~qK~~~Le~l~~l~~dp~~lvdiyvNYDCd~~~~nIfe~lv~~Lsk~a~~~~~~~~~~~~~~~~~~ 523 (1739)
||+++|++. +++||+++|++|.+||+||++++|||+|||||.+++||||+||+.|+|+|+|.++....+..++|++.
T Consensus 454 I~l~ile~~~~~s~~qK~~~L~~L~~lc~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~ 533 (1780)
T PLN03076 454 IVLRVLENVAQPNFQQKMIVLRFLDKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAA 533 (1780)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHhCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHH
Confidence 999999963 39999999999999999999999999999999999999999999999999986544333345678999
Q ss_pred chhchHHHHHHHHHHHHHHHHHhh---hhh--hccc----Ccchhhhhh---cc---cc----ccccccCCCCchhHHHH
Q 000274 524 IKGSSLQCLVNVLKSLVEWERSRR---ETK--KKNE----NSLSLAEEV---NA---KE----SVEIKSRDDVPDNFEKA 584 (1739)
Q Consensus 524 lk~~~L~~Lv~il~sl~~w~~~~~---~~~--~~~~----~~~~~~~~~---~~---~~----~~~~~~~~d~p~~~e~~ 584 (1739)
+|..||+||++||+||++|.+... +.. +... ......... ++ .+ ..+.....++|++|+++
T Consensus 534 lk~~aLecLv~il~sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1780)
T PLN03076 534 MKLEAMKCLVAILRSMGDWMNKQLRLPDPASLKKLDAVENNLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQR 613 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhccccccccccccccccccccccccccccccccCCcHHHHHHH
Confidence 999999999999999999987642 100 0000 000000000 00 00 01112234678899999
Q ss_pred HhhhHHHHHHHHHHhcChhhhHHHHHHCCCCCCChHHHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCCCC
Q 000274 585 KAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGM 664 (1739)
Q Consensus 585 k~~K~~l~~~i~~FN~~pkkGi~~L~~~g~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~~ 664 (1739)
|++|..+++|+.+||+|||+||+||+++|+++++|++||+||+++++|||++||||||++++++.+||++|++.|||+|+
T Consensus 614 k~~K~~l~~g~~~FN~~Pk~Gi~~L~~~~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~ 693 (1780)
T PLN03076 614 RAYKLELQEGISLFNRKPKKGIEFLINANKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGM 693 (1780)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHhhhc
Q 000274 665 KFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMNA 744 (1739)
Q Consensus 665 ~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~rY~~~Np~~f~sad~~yvLaysiimLnTdlHn~~vk~kMt~~~Fi~~n~ 744 (1739)
+||+|||.||++||||||+|+||||||+||+|||+|||+.|.++|++|+|+||+||||||+|||+||+|||+++|++|||
T Consensus 694 ~~d~ALR~fL~~FrLPGEaQ~IdRime~Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~r 773 (1780)
T PLN03076 694 EFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNR 773 (1780)
T ss_pred CHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccHHHHHHHHHHhhcccccccchhhhhh-cccccccccccchhhhccccccccCccchhhhhHHHHHHHHHHH
Q 000274 745 VNDAEECASTELLEEIYDSIVKEEIKMKDDVAKSS-RQKQEGEERGGLVGILNLALPKQKSSTDTKSESEAIVKQTQAIF 823 (1739)
Q Consensus 745 ~~d~~~~lp~e~L~~iY~~I~~~ei~l~~e~~~~~-~q~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~l~ 823 (1739)
|+|+|+|+|+|||++||++|+++||+|++++.... ++..+.....++..+++.. .|++..++|+++++.+.++++..+
T Consensus 774 gin~g~dlp~e~L~~iY~~I~~~ei~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~r~~~~e~~~~~s~~l~~~~~~~~ 852 (1780)
T PLN03076 774 GIDDGKDLPEEFMRSLYERISKNEIKMKEDDLVPQQKQSANSNRILGLDSILNIV-IRKRGEDSYMETSDDLIKHMQEQF 852 (1780)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCcccCcccccccccccccccchhhhhHHHHhHh-hHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999998863211 1111111111222234432 345556778899999999999888
Q ss_pred Hhc-CCccceEEecccccchHHHHHHhhhHHHHHHHhhhhcCCChhHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHh
Q 000274 824 RNQ-GVKRGVFYTSNRIELVRPMVEAVGWPLLAAFSVTMEEGENKPRVALCMEGFKAGIHITQVLGMDTMRYAFLTSLVR 902 (1739)
Q Consensus 824 k~~-~~~~~~f~~a~~~~~v~~Mf~~~w~p~LaalS~~l~~~~d~~~i~~cLeGf~~ai~ia~~~~l~~~Rdafi~sL~k 902 (1739)
|.. .+..+.|+.+++.+|+||||+++|+|+|||||++|++++|++++.+||+||+.+|||+|.|||+++||+||++|||
T Consensus 853 k~~~~~~~~~f~~a~~~~~~~~mfe~~W~p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~k 932 (1780)
T PLN03076 853 KEKARKSESVYYAATDVVILRFMVEVCWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAK 932 (1780)
T ss_pred HHhhccccCceeecchHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 754 4456789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCccchhhhhHHHHHHHHhhhccCCChhhhhHHHHHHHHHHhHHhhcC-----CCccc----------c-------
Q 000274 903 FTFLHAPKEMRSKNVEALRTLLALCDTEPDSLQDTWNAVLECVSRLEFIMST-----PAISA----------T------- 960 (1739)
Q Consensus 903 ft~L~~~~em~~KNv~alkaLL~lA~~~Gn~L~~SW~~IL~~is~Le~l~~~-----P~~~~----------~------- 960 (1739)
||.|+++.+|++||++|+|+||+||+++||+|++||++||+|||+||+++.. |+... +
T Consensus 933 fT~L~~~~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~ 1012 (1780)
T PLN03076 933 FTSLHSPADIKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPI 1012 (1780)
T ss_pred HcCCCChhhhhHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCcchhhhccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999832 22100 0
Q ss_pred ------------------cccCCCc-----------cchhHHHH------HHHHhhcCchhhhhhcCCCCChhHHHHHHH
Q 000274 961 ------------------VMLGSNQ-----------ISKDAVVQ------SLKELAGKPAEQVFVNSVKLPSDSIVEFFN 1005 (1739)
Q Consensus 961 ------------------~~~~s~~-----------~s~~~~~~------sl~e~~~~~id~IF~~S~~Ls~eAiv~Fv~ 1005 (1739)
.++++.. ...+.+.. .+..+..+.+|+||++|.+|+++||++||+
T Consensus 1013 ~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~ 1092 (1780)
T PLN03076 1013 LPVLKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVK 1092 (1780)
T ss_pred ccccccccccccchhhhhhcccccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHH
Confidence 0000000 00011000 011233457999999999999999999999
Q ss_pred HHHhhcHHhhhcC-CCccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 000274 1006 ALCGVSAEELRQT-PARVFSLQKLVEISYYNMARIRMVWARIWSVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERA 1084 (1739)
Q Consensus 1006 ALc~vS~eEl~~s-~pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~e 1084 (1739)
|||+||++||+++ +||+|+|+|||||++|||+|||++|++||+++++||+++|||+|..||+||+|+||||+|||++++
T Consensus 1093 AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~e 1172 (1780)
T PLN03076 1093 ALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLERE 1172 (1780)
T ss_pred HHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchh
Confidence 9999999999874 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 000274 1085 ELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVI 1164 (1739)
Q Consensus 1085 EL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~ 1164 (1739)
||.||+||++||+||+++|.++.+.+||++||+|+.|||++++++|+||||+||+||+.|+.++++.+|+.||+++++|+
T Consensus 1173 EL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~ 1252 (1780)
T PLN03076 1173 ELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKII 1252 (1780)
T ss_pred hhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhh---hhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCC-C-----C---C-C---ccc-
Q 000274 1165 LEHFDQVV---GDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDL-K-----P---I-D---VET- 1227 (1739)
Q Consensus 1165 ~d~~~~l~---~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~-~-----~---~-~---~~~- 1227 (1739)
++||+.++ .++|.|||+||.+|++|..++||||+||++||.|+++++++.+..... . + . . .+.
T Consensus 1253 ~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 1332 (1780)
T PLN03076 1253 REYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQES 1332 (1780)
T ss_pred HhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccc
Confidence 99999877 599999999999999999999999999999999999998764321000 0 0 0 0 000
Q ss_pred --cCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccc-
Q 000274 1228 --DATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLI- 1304 (1739)
Q Consensus 1228 --~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~- 1304 (1739)
....+....+|+|||++|+++++|+|+|||++||+|||++|..||+.|++++|+.||++||||||+.++...+....
T Consensus 1333 ~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~ 1412 (1780)
T PLN03076 1333 GEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGD 1412 (1780)
T ss_pred cccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 01223446899999999999999999999999999999999999999999999999999999999999865433111
Q ss_pred -------------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHcC
Q 000274 1305 -------------SSEDEWFRETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGG 1371 (1739)
Q Consensus 1305 -------------~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~~~ 1371 (1739)
.+.++|+.|||++||+++++||++||+.|++||++++.||.+||||+|++|||||++||++||.+||
T Consensus 1413 ~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1413 EPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence 1347899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHhhHHHHHHHHHHHHhhcCchhhhhhcccccchhcccccccCCCCCCCCCccCCCCCcccCCCCCCCCCCCCCCCC
Q 000274 1372 HQFSESDWDTLLKSIRDASYTTQPLELLNENLKNVTVVIRDSEVGAGEADNNQFGVSDNGKVSTLSSPTIGADGTPRNLN 1451 (1739)
Q Consensus 1372 ~~f~~~~W~~i~~~~~~~~~~T~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1451 (1739)
++|++++|++||++|+++|++|+|++ .+.+..... |. .+
T Consensus 1493 ~~F~~~~W~~i~~~~~~lf~~T~p~~--~~~~~~~~~--------------------------~~-------~~------ 1531 (1780)
T PLN03076 1493 HLFSDEKWLEVVLSLKEAANATLPDF--SYVVSGEYM--------------------------PA-------EN------ 1531 (1780)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCch--hhccccccc--------------------------cc-------cc------
Confidence 99999999999999999999999995 343321000 00 00
Q ss_pred CCCCcCccccccccCCCCCCCCCCCCccchhhhhhhhccccchhhccccccccccccccccCCCCCCCCCCCCCCCCCCC
Q 000274 1452 TPFSLDHNQEAGLHLDGSEGVPSPSGRAQKTTEAFQRNQSIGQKIMGNMMDNRFLRSFTSKSKSQVPDASIPSSSPKLPD 1531 (1739)
Q Consensus 1452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1531 (1739)
. + ...++.. ..+. ..
T Consensus 1532 -~-~--------~~~~~~~-~~~~-----------------------------------------~~------------- 1546 (1780)
T PLN03076 1532 -I-Q--------DSENAEA-ASSS-----------------------------------------TA------------- 1546 (1780)
T ss_pred -c-c--------ccccccc-cccc-----------------------------------------cc-------------
Confidence 0 0 0000000 0000 00
Q ss_pred CCCCCcccccccchhhHHH-HHH--HHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHHhhccCCHHHHHHhhh
Q 000274 1532 AVEPDAKDEEESPIWATIR-GKC--ITQLLLLSAIDSIQRKYWGKLKAPQKIAIMDILLSLLEFSASYNSYSNLRMRMHH 1608 (1739)
Q Consensus 1532 ~~~~~~~~~~~~~~~~~i~-~kc--vlQLLli~~~~el~~~~~~~ip~~~~~~l~~~L~~s~~fA~~fN~d~~LR~rL~~ 1608 (1739)
...+.. ..+++.|+.|+ +|| |+||||||+++|||++||.+||++|+++||++|++||+|||+||+|++||+||||
T Consensus 1547 ~~~~~~--~~~~~~~~~i~~~kc~~v~QLllI~~~~~l~~~~~~~l~~~~l~~l~~~L~~s~~fA~~fN~d~~lR~~l~~ 1624 (1780)
T PLN03076 1547 DNDAEA--ERSRRLYAAISDAKCRAAVQLLLIQAVMEIYNMYRPRLSAKNTLVLFDALHTVASHAHKINSDTALRSKLQE 1624 (1780)
T ss_pred cchhhh--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 000000 11456788887 999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC--CcchhhhhhhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccCCCCCccccchhhhhHHHHHHHHHHH
Q 000274 1609 IPAERPP--LNLLRQELAGTSIYLDILQKTTSRFNGNGEEIPKSNGSQGVDTTLDDNTSSCITHFDEKLVGIAEEKLVSF 1686 (1739)
Q Consensus 1609 ~~~~~~~--pnLLkqE~~s~~~yl~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~lv~~ 1686 (1739)
+|||+++ |||||||++||++|++||||||+|.+. ...+.++|++||++
T Consensus 1625 ~g~~~~~~~PnLLkqE~~s~~~~l~il~~~~~d~~~------------------------------~~~~~~~~~~l~~~ 1674 (1780)
T PLN03076 1625 LGSMTQMQDPPLLRLENESYQICLTFLQNLILDKPP------------------------------LAKEAEVESRLVEL 1674 (1780)
T ss_pred hhhcccCCCCchhhHhHHHHHHHHHHHHHHhcCCCc------------------------------cchHHHHHHHHHHH
Confidence 9999975 999999999999999999999999541 11377899999999
Q ss_pred HHHHHHHhHccCCcc--c---c--------cccccccccccccCceEEEe----eccccchhhhhhc
Q 000274 1687 CEQVLREASDLQSSV--G---E--------TTNMHIHRVLELRSPIIVKV----CYMSYRLFFIILY 1736 (1739)
Q Consensus 1687 c~~il~~~~~l~~~~--~---e--------~~~~~~~r~~~~~~pvi~~v----~~~~~~~f~~~~~ 1736 (1739)
|++||++|+.|+... . + ...++++|+|++|+||||+| +.||++.|++.+-
T Consensus 1675 c~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~~~l~~~~f~~~~~ 1741 (1780)
T PLN03076 1675 CEEVLQFYIETSTAGQDSEDSSSQQPRWLIPLGSGKRRELAARAPLVVATLQAVCGLGDSSFEKNLV 1741 (1780)
T ss_pred HHHHHHHHHHhhcccccccccccccccccccccchhHHHHHhcchHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999998510 0 0 01134599999999999999 9999999998764
No 2
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-257 Score=2445.79 Aligned_cols=1463 Identities=41% Similarity=0.648 Sum_probs=1216.4
Q ss_pred cccHHHHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCCCCCccccccccCCCCCCccccccccccccccccCccccccc
Q 000274 5 GFVSRAFESMLKECSGKKFPDLQKAIQTYLDNAKEVKPPASSETSEATASAGDGSSIETEAGAAEKGTEAVQLPAEQTEH 84 (1739)
Q Consensus 5 ~~~~~ale~i~~~~~~kk~~~l~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1739)
|||++++|||+++++||+|++|+++|+.++|++++...
T Consensus 1 ~~v~~~~~ki~~~~~~~~~s~l~~~~~~~~~~~~~~~~------------------------------------------ 38 (1514)
T KOG0929|consen 1 MFVSSALEKILADAEWRKHSKLKKACKSALEELKANGL------------------------------------------ 38 (1514)
T ss_pred CCccccHHHHhhhhhhhhHHHHHHHHHHHHHhhhcccC------------------------------------------
Confidence 68999999999999999999999999999999997210
Q ss_pred cCcccccchhHHHHHhhhCCCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHHhhcCcccCCCCCCCCCCcchHHHH
Q 000274 85 IGKTVGVSGSVATALANAGHTLEAADAELVLNPLRLAIETKNLKLLESALDCLHKLIAYDHLEGDPGLNGGKNAPLFTDI 164 (1739)
Q Consensus 85 ~~~p~~~~~~~~~~l~~~~~~~~~~d~~~if~Pf~lAc~sks~ki~~~ALdclqKLis~~~i~~~~~~~~~~~~~li~~i 164 (1739)
...++|.+|+||++||+||++||+.+|+||+||||+|||++|++++.++++..+|+++
T Consensus 39 ----------------------~~~~~e~~~~p~~la~~t~~~ki~~~~~dc~~kli~~~~l~g~~~~~~~~~~~l~~~~ 96 (1514)
T KOG0929|consen 39 ----------------------SLAEAELYLLPFELACDTKSPKIVSPALDCLQKLIAYGHLTGESNDSGGPEDLLIDKI 96 (1514)
T ss_pred ----------------------CCcchhhhhChHHhhcCCCCcchhccHHHHHHHHHHhhhccCCCCCCCCcchhHHHHH
Confidence 1258899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHHHHhccccccccchhHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHHHhcccc
Q 000274 165 LNMVCGCVDNSSSDSTILQVLKVLLTAVASAKFRVHGEPLLGVIRVCYNISLNSKSPINQATSKAMLTQMVSIVVRRMEN 244 (1739)
Q Consensus 165 v~tI~~c~~~~~~d~v~LQIlkaLlt~V~s~~~~vhg~~LlkaVrtcyni~l~Sks~~nq~tA~aTLtQmv~~VF~R~~~ 244 (1739)
+++||.|+++. ++.++||++|+||++|+|+++++||++|+.+||||||||+.| ++||++|+++|+||+++||.||+.
T Consensus 97 ~~~vc~~~~~~-~e~~elq~~k~lL~av~s~~~~i~~~~ll~~vr~c~~iyl~s--~~nq~~ak~~L~qml~~vf~~~e~ 173 (1514)
T KOG0929|consen 97 IEAVCKCFDGL-DESVELQVLKALLAAVTSQHIEIHGDSLLLIVRTCYNIYLGS--PINQTTAKATLTQMLNIVFRRMEE 173 (1514)
T ss_pred HhHhhhccCCC-chhhhHhHHHHHHHHHhccceeecCcchHHHHHHHHHHHhcC--cccchHHHHHHHHHHHHHHHHhhh
Confidence 99999999996 788999999999999999999999999999999999999999 999999999999999999999998
Q ss_pred cccccCCCCCCCCCCCCcCcCCCCCcccccCCCCCCCCcccccccc-cCCCCCchhhhhhccCCCCccchhhhhhhhhcc
Q 000274 245 DQVSTLPTSSGHTETSSADDASRMPEETTLGDKNKDGMTLGDALTQ-AKDTPIASVEELHNLAGGADIKGLEAVLDKAVH 323 (1739)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (1739)
+.........++......+. ......+....+.++...+.++ ...+.......-++...+ +.. .......
T Consensus 174 ~~~~~~~i~vs~~~~~~~~~----~s~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~ 244 (1514)
T KOG0929|consen 174 DSSDESQILVSELLRVSDDP----SSTEFVQQFIDSIMEVLVASPEDVGLTEMLDDNVNENSKTG-DSL----SLRDAES 244 (1514)
T ss_pred ccCcccccccccccccCCCc----chhHHHHHHHHHHHHhccCCccccccccccccccccccccC-ccc----ccCcccc
Confidence 76543310111111111000 0000000000000000000000 000000000000000000 000 0000000
Q ss_pred cccCcccccCCcccccChhhhHHHHHHHHHHhccCCCCCc----hh-hhhhhHHHHHHHHHHHhcCCcccccChhhHHHH
Q 000274 324 LEDGKKITRGIDLESMSIGQQDALLVFRTLCKMGMKEDSD----EV-TTKTRILSLELLQGLLEGVSHSFTKNFHFIDSI 398 (1739)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~kDAflvFr~LCkLs~k~~~~----~~-~~rsk~lsLeLl~~iL~~~~~~f~~~~~f~~~i 398 (1739)
.+.......+......+.+++|||+|||+||||+||+.+. .. .+|+|+++||||..+|++++++|+.+..|+.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~Daflvfr~Lckls~k~~s~~~~d~~s~~R~k~lsl~ll~~il~~~~~vf~s~~~fi~ai 324 (1514)
T KOG0929|consen 245 PESESERDDDSERSSQNKLQRDAFLVFRALCKLSMKPLSSEESDTQSHMRSKLLSLELLKSILENSGSVFRSNEHFIDAI 324 (1514)
T ss_pred cccccccCcchhhccccHHHHhHHHHHHHHHHhhCCCCCCCCCChHHHHhhhHHHHHHHHHHHhccchhhcCchhhHHHH
Confidence 0000000001112345899999999999999999999874 22 399999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHHHhcChhH
Q 000274 399 KAYLSYALLRASVSQSSVIFQYATGIFSVLLLRFRESLKGEIGVFFPLIVLRSLDGSD--NNQKTSVLRMIDKVCKDPQM 476 (1739)
Q Consensus 399 k~~Lc~~Llrn~~S~~~~vF~lsl~If~~Ll~~~r~~Lk~Eievfl~~i~l~~Le~s~--~~qK~~~Le~l~~l~~dp~~ 476 (1739)
|||||.+|+||++|+++.+|+++|.||+.|+.+||.++|.||||||++|+++++|.++ +.||+++|..+.++|.||+.
T Consensus 325 kqyKOGalskn~vS~~~~vfe~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~s~~qk~~~l~~~~~ic~d~q~ 404 (1514)
T KOG0929|consen 325 KQYLCLALSKNSVSNVPMVFELSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTSSFQQKMMVLRILTRICADPQT 404 (1514)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhcCCCcccchhHHHHHHhhhcCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999754 89999999999999999999
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHhccCCCCCCCcccccccccchhchHHHHHHHHHHHHHHHHHhhhhhhcccCc
Q 000274 477 LVDVYVNYDCDLEAPNLFERMVTTLSKIAQGTQNTDPNSVMVSQTTTIKGSSLQCLVNVLKSLVEWERSRRETKKKNENS 556 (1739)
Q Consensus 477 lvdiyvNYDCd~~~~nIfe~lv~~Lsk~a~~~~~~~~~~~~~~~~~~lk~~~L~~Lv~il~sl~~w~~~~~~~~~~~~~~ 556 (1739)
+|++|+|||||.+..||||++++.++|+|+|+.....+ ..+.++..++..++.||+++++++..|.++...........
T Consensus 405 ~Vdi~vnydcd~~~~nifer~v~~ltk~a~g~~~s~~~-~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~~~~~~~t~~ 483 (1514)
T KOG0929|consen 405 LVDIYVNYDCDSNSQNIFERLVNGLSKIAQGRTGSNLE-LSPVQELALRLKSLKCLVSILKSMSGWNDNQLNVEGVITGK 483 (1514)
T ss_pred ccccccCCccccCCccHHHHHHhhHHHhhcCCCccccC-CCCchhhhHhhhhhhhHHHHHHhhhhhccccccCCCcccCc
Confidence 99999999999999999999999999999985433322 34667889999999999999999999987622111000000
Q ss_pred chhhhhhcccccc-ccccCCCCchhHHHHHhhhHHHHHHHHHHhcChhhhHHHHHHCCCCCCChHHHHHHHHhcCCCChH
Q 000274 557 LSLAEEVNAKESV-EIKSRDDVPDNFEKAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKA 635 (1739)
Q Consensus 557 ~~~~~~~~~~~~~-~~~~~~d~p~~~e~~k~~K~~l~~~i~~FN~~pkkGi~~L~~~g~i~~~p~~iA~FL~~~~~Ldk~ 635 (1739)
.....+.....+. ......|+|++|+..|.+|. +++|+.+||.+|++||+||++.|+++++|.+||+||..+.+|||+
T Consensus 484 ~~~~~~~~~~~~s~~~~~~~~~~~q~e~~k~ek~-l~~~i~~fN~kpkkgi~~l~s~~~v~~sp~eiaeFL~~t~~l~kt 562 (1514)
T KOG0929|consen 484 KSSTTPIENELNSDTQSNDADDPEQFEALKSEKQ-LQEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEFLIGTEGLSKT 562 (1514)
T ss_pred cccCcchhhhccCccccccccChhhhhhhhhhcc-hHHHHHHhccCCccCchhhhhcCCCCCCHHHHHHHHHhccCCCHH
Confidence 0000000000001 11223477999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCChHHHHHHHHHHcCCCCCCChHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCC-CCCChhHHHHH
Q 000274 636 MIGDYLGQHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPG-LFKNADTAYVL 714 (1739)
Q Consensus 636 ~iGeyLg~~~~~~~~vl~~yv~~~dF~~~~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~rY~~~Np~-~f~sad~~yvL 714 (1739)
++|+|||+++++|++|||+|||+|||++++|++|||.||++||||||+|||||||+|||+|||+|||+ +|.|||+||+|
T Consensus 563 ~igdyLGe~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFssADtaYVL 642 (1514)
T KOG0929|consen 563 ILGDYLGEDDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSSADTAYVL 642 (1514)
T ss_pred HHHHHhcCCcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCCccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCHHHHHhhhccCCCCccccHHHHHHHHHHhhcccccccchhhh-hhcccccccccccchh
Q 000274 715 AYSVILLNTDAHNPMVWPKMTKSDFVRMNAVNDAEECASTELLEEIYDSIVKEEIKMKDDVAK-SSRQKQEGEERGGLVG 793 (1739)
Q Consensus 715 aysiimLnTdlHn~~vk~kMt~~~Fi~~n~~~d~~~~lp~e~L~~iY~~I~~~ei~l~~e~~~-~~~q~~~~~~~~~~~~ 793 (1739)
||||||||||+|||+||+|||+++||+||||+|+|+|+|+|||+.+||+|..+||+|.++... .+.+..+.....++.+
T Consensus 643 AfSlIMLnTDlHnp~vKnKMTK~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~~~~~~~~~ 722 (1514)
T KOG0929|consen 643 AFSLIMLNTDLHNPNVKNKMTKADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNLPKLLGLTG 722 (1514)
T ss_pred HHHHHHHhccccCchhhccccHHHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCCcchhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999988743 2222222222223333
Q ss_pred hhccccccccCccchhhhhHHHH--HHHHHHHHhcCCccceEEecccccchHHHHHHhhhHHHHHHHhhhhcCCChhHHH
Q 000274 794 ILNLALPKQKSSTDTKSESEAIV--KQTQAIFRNQGVKRGVFYTSNRIELVRPMVEAVGWPLLAAFSVTMEEGENKPRVA 871 (1739)
Q Consensus 794 ~~n~~~~~~~~~~~~~~~~e~~~--~~~~~l~k~~~~~~~~f~~a~~~~~v~~Mf~~~w~p~LaalS~~l~~~~d~~~i~ 871 (1739)
++++.... ..+.+. .....+.+......+.||.++|++||||||+++|+|++|||++++++++|..++.
T Consensus 723 ~~~l~~~~---------r~~~~~~s~~~~~~~e~~s~~~s~~~~ath~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n 793 (1514)
T KOG0929|consen 723 ILNLRSNS---------RMSAIDMSASQSQLKEKGSLSESVFYSATHLISVRPMFESLWTPMLAAFSVGLQDSDDLEIAN 793 (1514)
T ss_pred ccccchhh---------hhhHHHhhhhHHHHHHhcccccccceecccceeeeccccccccchhhhhchhhhcCCcccccc
Confidence 33322211 111221 1122333444445689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHhhhccCCccchhhhhHHHHHHHHhhhccCCChhhhhHHHHHHHHHHhHHh
Q 000274 872 LCMEGFKAGIHITQVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLALCDTEPDSLQDTWNAVLECVSRLEFI 951 (1739)
Q Consensus 872 ~cLeGf~~ai~ia~~~~l~~~Rdafi~sL~kft~L~~~~em~~KNv~alkaLL~lA~~~Gn~L~~SW~~IL~~is~Le~l 951 (1739)
.||+||++++||+|.|+|++.||||+++|++||.++.+.+|+.||++++|+++.||.++||+|.++|.+|+.|++|+|++
T Consensus 794 ~cl~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~~~e~k~kNi~aik~l~~ia~t~gn~l~~sW~~Il~cisqlE~~ 873 (1514)
T KOG0929|consen 794 LCLDGFRLAISIASIFSMELGRDAFVQALARFTNLHAPSEMKQKNIDAIKALLEIADTDGNKLFDSWLDILKCISQLEHT 873 (1514)
T ss_pred ccccchhheeeehhhhcCCccccHHHHHHHHHHhccCHHHHhHhhHHHHHHHHHHhhcccchhHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC---------ccccc---ccC--CCc----cch-hHH--HHHHHHhhcCchhhhhhcCCCCChhHHHHHHHHHHhh
Q 000274 952 MSTPA---------ISATV---MLG--SNQ----ISK-DAV--VQSLKELAGKPAEQVFVNSVKLPSDSIVEFFNALCGV 1010 (1739)
Q Consensus 952 ~~~P~---------~~~~~---~~~--s~~----~s~-~~~--~~sl~e~~~~~id~IF~~S~~Ls~eAiv~Fv~ALc~v 1010 (1739)
+..+. +.+.. ..+ +.. .++ +.. ..+.+.+ .++++||++|..|++++|++|++|||+|
T Consensus 874 qli~sg~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~e~~~~~~s~s~v--i~~d~Ift~S~~l~~eaIv~FvkaLc~v 951 (1514)
T KOG0929|consen 874 QLIGSGSPPNKLPFVVSQREDYKKPGGSYDSSGDGSRIENVGEKSSVSVV--IQMDRIFTSSQRLDSEAIVDFVKALCKV 951 (1514)
T ss_pred HHhcCCCCcccCcchhhhchhccCCcccccccccccchhccccchhHHHH--HHhhhhhcccccCCchHHHHHHHHHHHH
Confidence 74322 11100 001 100 000 000 0111222 2589999999999999999999999999
Q ss_pred cHHhhhc-CCCccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcch
Q 000274 1011 SAEELRQ-TPARVFSLQKLVEISYYNMARIRMVWARIWSVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNF 1089 (1739)
Q Consensus 1011 S~eEl~~-s~pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f 1089 (1739)
|++||.+ ++||+|+|||+|||+||||+|||++|++||.++++||+.|||+.|..|+.||+|+|||++|||++++|+.+|
T Consensus 952 s~~eL~s~~~PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F~~vg~~~n~~vaifa~DslRQlsmkfle~~el~~f 1031 (1514)
T KOG0929|consen 952 SMDELLSPSTPRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFFVSVGCNSNESVAIFALDSLRQLSMKFLERSELDNF 1031 (1514)
T ss_pred HHHHhcCCCCCCeeecccceeeeccccccchhhHHHHHHHhhhhhhccccCCCCceEEEehhhhHHhhhhhcchhhhhhh
Confidence 9999998 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhh
Q 000274 1090 TFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFD 1169 (1739)
Q Consensus 1090 ~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~ 1169 (1739)
+||++||+||+++|..+.+++|||+|+||+. +|++|||++||+|++.||.+.+++||..+|+++..++.+||.
T Consensus 1032 ~Fq~~fl~Pfe~im~~s~s~~Irelv~rC~~-------~nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~ 1104 (1514)
T KOG0929|consen 1032 RFQKDFLRPFEHIMKRSSSAEIRELVVRCIS-------SNIKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFE 1104 (1514)
T ss_pred hHHHhhcCcchHHhhccCcchhHHHHHhhhh-------hhhhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred hhhh---hhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHh
Q 000274 1170 QVVG---DCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLS 1246 (1739)
Q Consensus 1170 ~l~~---~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls 1246 (1739)
.+.. ++|.||+.||.+|+++..+.++|++||.++|.|+.++.++ ......+ .......+.|..+|+|+|++|+
T Consensus 1105 ~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~-~~~~~~~---~~~~~~~~~~~~~wfP~l~~ls 1180 (1514)
T KOG0929|consen 1105 NVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEG-VYNEKLK---VGKDSEFDVWNSGWFPMLFQLS 1180 (1514)
T ss_pred hhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccc-cchhhcc---cccccccccceeeeehhHhhhh
Confidence 9876 8999999999999999999999999999999999999987 1111111 1112256778999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHH
Q 000274 1247 DLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLF 1326 (1739)
Q Consensus 1247 ~l~~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF 1326 (1739)
++++|+|++||++|+++||+|+..||+.|..+||+.+|+ +|||||+.++..++.. .+.+||.|||++||+.+|+||
T Consensus 1181 ~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~~---~~~eW~~tT~~~Al~~~v~lf 1256 (1514)
T KOG0929|consen 1181 KIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDES---EKDEWLSTTCNHALQALVDLF 1256 (1514)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heeecccccCcccchh---hhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 9999999999877653 456799999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHHHhhcCchhhhhhccccc
Q 000274 1327 NTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRDASYTTQPLELLNENLKNV 1406 (1739)
Q Consensus 1327 ~~yf~~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~~~~~f~~~~W~~i~~~~~~~~~~T~p~~l~~~~~~~~ 1406 (1739)
++||+.++.+|++++.+|.+||||+|+++|++|++||++|+.+||.+|++++|++++++|.++|++|+|++|++|.....
T Consensus 1257 ~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~T~p~~l~~~~~~~~ 1336 (1514)
T KOG0929|consen 1257 TQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKTTLPHELLTWRTMSD 1336 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHhcCcHHHhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999832100
Q ss_pred chhcccccccCCCCCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCCCcCccccccccCCCCCCCCCCCCccchhhhhh
Q 000274 1407 TVVIRDSEVGAGEADNNQFGVSDNGKVSTLSSPTIGADGTPRNLNTPFSLDHNQEAGLHLDGSEGVPSPSGRAQKTTEAF 1486 (1739)
Q Consensus 1407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1486 (1739)
.. ++ +. +.
T Consensus 1337 ~~---------------------~~---------------------------~~----e~-------------------- 1344 (1514)
T KOG0929|consen 1337 IS---------------------SE---------------------------QN----EL-------------------- 1344 (1514)
T ss_pred Cc---------------------cc---------------------------cc----cc--------------------
Confidence 00 00 00 00
Q ss_pred hhccccchhhccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 000274 1487 QRNQSIGQKIMGNMMDNRFLRSFTSKSKSQVPDASIPSSSPKLPDAVEPDAKDEEESPIWATIRGKCITQLLLLSAIDSI 1566 (1739)
Q Consensus 1487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~kcvlQLLli~~~~el 1566 (1739)
.+. +. . .-.+..-..|+.+||+
T Consensus 1345 ~~~----------------------------~~-----~-----------------~v~~~~~~~k~~~~~~-------- 1366 (1514)
T KOG0929|consen 1345 SQT----------------------------IS-----N-----------------IVFYPATESKEDTDLL-------- 1366 (1514)
T ss_pred ccc----------------------------cc-----c-----------------cccccccchHHHHHHH--------
Confidence 000 00 0 0001111334445554
Q ss_pred HHHHHccCChhHHHHHHHHHHHHHHHHhhccCCHHHHHHhhhCCCCCCCCcchhhhhhhHHHHHHHHHHHhcCCCCCCCC
Q 000274 1567 QRKYWGKLKAPQKIAIMDILLSLLEFSASYNSYSNLRMRMHHIPAERPPLNLLRQELAGTSIYLDILQKTTSRFNGNGEE 1646 (1739)
Q Consensus 1567 ~~~~~~~ip~~~~~~l~~~L~~s~~fA~~fN~d~~LR~rL~~~~~~~~~pnLLkqE~~s~~~yl~il~~~~~~~~~~~~~ 1646 (1739)
+||.+||++|+++|+|+|..||+|||+||+|++||+|||++|.++++|||||||++|+++|++|||+||.|++.
T Consensus 1367 --~~~~~l~~~~~~~l~d~l~~s~~fa~~fN~d~~lR~~l~~~~~~~~~pnLL~qE~~s~~~~l~~lf~~~~~~~~---- 1440 (1514)
T KOG0929|consen 1367 --GMYTSLSAQHLLKLLDILSESHEFAKQFNSDYELRTKLWRAGKGSQKPNLLRQETSSLACYLDILFRLLKDDPR---- 1440 (1514)
T ss_pred --HHHhhCCHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHhccCcc----
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999651
Q ss_pred CCCCCCCCCcccccCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHhHccCCcccccccccccccccccCceEEEe---
Q 000274 1647 IPKSNGSQGVDTTLDDNTSSCITHFDEKLVGIAEEKLVSFCEQVLREASDLQSSVGETTNMHIHRVLELRSPIIVKV--- 1723 (1739)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~lv~~c~~il~~~~~l~~~~~e~~~~~~~r~~~~~~pvi~~v--- 1723 (1739)
. .+++|++||++|.+||++|.+|+++.+++.-+.-++.+.++.|.++.+
T Consensus 1441 --------------------------~--~~~i~~~l~~~c~~~l~~y~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 1492 (1514)
T KOG0929|consen 1441 --------------------------V--SEEIESRLVTVCSEVLKGYLSLTSETHEAWLTPSDEEFSARAPLYYALLCA 1492 (1514)
T ss_pred --------------------------c--cHHHHHHHHHHHHHHHHHHHhccccchhhhcCCcHHHHhccCchHHHHHHH
Confidence 1 169999999999999999999998777655556678889999999987
Q ss_pred -eccccchhhhhh
Q 000274 1724 -CYMSYRLFFIIL 1735 (1739)
Q Consensus 1724 -~~~~~~~f~~~~ 1735 (1739)
|.|+.+.|.+.+
T Consensus 1493 ~~~~~~~~~~r~~ 1505 (1514)
T KOG0929|consen 1493 MCAFDLDPELRHL 1505 (1514)
T ss_pred HHHcCCcHHHHHH
Confidence 888888887754
No 3
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-115 Score=1103.94 Aligned_cols=1185 Identities=22% Similarity=0.345 Sum_probs=873.1
Q ss_pred CcccccchhHHHHHhhhCCCCCccCHHHHHHHHHHHHccCCh--hHHHHHHHHHHHHhhcCcccCCCCCCCCCCcchHHH
Q 000274 86 GKTVGVSGSVATALANAGHTLEAADAELVLNPLRLAIETKNL--KLLESALDCLHKLIAYDHLEGDPGLNGGKNAPLFTD 163 (1739)
Q Consensus 86 ~~p~~~~~~~~~~l~~~~~~~~~~d~~~if~Pf~lAc~sks~--ki~~~ALdclqKLis~~~i~~~~~~~~~~~~~li~~ 163 (1739)
+.||..+...++...+....+..+||..|++||+...+|.+. +||..||+.++|+++|+.|+.+.+. ..-.++.
T Consensus 42 ~~~ll~~f~~Lr~~ln~~~~l~~idp~~~L~PFL~vI~s~~~~g~iTslALssv~Kflt~~iid~~s~n----~~~am~~ 117 (1386)
T KOG0928|consen 42 SHSLLSSFKQLREVLNSLASLDTIDPLTYLSPFLEVIKSDETTGPITSLALSSVLKFLTLNIIDESSPN----AADAMRN 117 (1386)
T ss_pred chHHHHHHHHHHHHhhchhhhccCChHhHHhHHHHHHhcccCCccHHHHHHHHHHHHheeeecCccCcc----HHHHHHH
Confidence 456888899999999999999999999999999999998866 9999999999999999999876431 2345788
Q ss_pred HHHHHHhh-cc---CCCCchhHHHHHHHHHHHhccccccc-cchhHHHHHHHHHhhhccC-CChhHHHHHHHHHHHHHHH
Q 000274 164 ILNMVCGC-VD---NSSSDSTILQVLKVLLTAVASAKFRV-HGEPLLGVIRVCYNISLNS-KSPINQATSKAMLTQMVSI 237 (1739)
Q Consensus 164 iv~tI~~c-~~---~~~~d~v~LQIlkaLlt~V~s~~~~v-hg~~LlkaVrtcyni~l~S-ks~~nq~tA~aTLtQmv~~ 237 (1739)
++++|++| |+ ..+||.|.|+|+++|.+++.+|.+.+ ..+.++..|.||+++.+.+ ++.+.|.+|+.|+.-|+..
T Consensus 118 ~v~AvthcRFe~td~~Sde~VllkilqvLr~lm~sp~~~lLSnq~Ic~ivqTcl~v~~q~~lselLr~~Ae~Tm~~~~~~ 197 (1386)
T KOG0928|consen 118 IVDAVTHCRFEGTDPASDEVVLLKILQVLRSLMDSPAGALLSNQIICDIVQTCLRVVCQSRLSELLRKSAEHTMHDLTQL 197 (1386)
T ss_pred HHHHHHheeeeccCccchhHHHHHHHHHHHHHHhCchhhhcchhHHHHHHHHHHHHHHHHhHHHHhhcchhhhHHHHHHH
Confidence 99999999 44 43456677999999999999988665 9999999999999988766 5899999999999999999
Q ss_pred HHhcccccccccCCCCCCCCCCCCcCcC-----CCCCcccccCCCCCCCCcccccccccCCCCCchhhhhhccCCCCccc
Q 000274 238 VVRRMENDQVSTLPTSSGHTETSSADDA-----SRMPEETTLGDKNKDGMTLGDALTQAKDTPIASVEELHNLAGGADIK 312 (1739)
Q Consensus 238 VF~R~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1739)
+|+|++...+.....-...++....... ..+..+.+......+..+.++.... +..+......+..
T Consensus 198 IFsrLk~~~~~~~~~~~~~~es~~~~~~~~~~i~~k~~en~e~~~~~~~a~~~~~~~~---------~~~~~~v~~~~~~ 268 (1386)
T KOG0928|consen 198 IFSRLKYIEPPYVNEMYINDESYQGNVLKDDFIGTKRVENGEISSEDESATFDDGSIS---------EKFEVPVQQVDRE 268 (1386)
T ss_pred HHHhCccccccccchhhcchHhhhcccccccccCcccCCCCCccCccccccccccccc---------ccccCCccccccc
Confidence 9999997652111001111111000000 0000000000000000000000000 0001100000000
Q ss_pred --hhhhhhhhhcccccCcccccCCcccccChhhhHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHHHHHhcCCccccc
Q 000274 313 --GLEAVLDKAVHLEDGKKITRGIDLESMSIGQQDALLVFRTLCKMGMKEDSDEVTTKTRILSLELLQGLLEGVSHSFTK 390 (1739)
Q Consensus 313 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kDAflvFr~LCkLs~k~~~~~~~~rsk~lsLeLl~~iL~~~~~~f~~ 390 (1739)
..++. ..+ .......+|.+ ..+| .|..||+|.+...+..+....++++|.||++.++-.|+.|+.
T Consensus 269 ~~~~~e~-a~~---~~~~~~~ygip------~~~~---~~h~l~sl~~~~n~~~~~es~~~~~l~lin~aie~~g~~i~~ 335 (1386)
T KOG0928|consen 269 QETDEEN-AEA---MAAMDENYGIP------VMKD---IFHFLLSLLNVTNTVAHDESVRSFALVLINSAIELGGDCIRE 335 (1386)
T ss_pred cCChhhh-hhH---hhcccccCCCc------eecc---chhhhhhhccccccccchhhhhHHHHHHHHhhHhhcchHHHH
Confidence 00000 000 00001123332 1333 466788888877666566667889999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhh-----cCCChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCC---CChhhHHH
Q 000274 391 NFHFIDSIKAYLSYALLRAS-----VSQSSVIFQYATGIFSVLLLRFRESLKGEIGVFFPLIVLRSLDG---SDNNQKTS 462 (1739)
Q Consensus 391 ~~~f~~~ik~~Lc~~Llrn~-----~S~~~~vF~lsl~If~~Ll~~~r~~Lk~Eievfl~~i~l~~Le~---s~~~qK~~ 462 (1739)
||.|+..|.+.+...++..+ .|-.+.++++.+.+...|...+|.++|.++|.||+.+.++.... .++.||.+
T Consensus 336 ~prll~liqd~~fk~l~~~~~~~~k~s~~~~~Lql~~s~vl~l~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ 415 (1386)
T KOG0928|consen 336 HPRLLRLIQDPLFKHLIEFLQIPTKMSLERLVLQLFCSLVLNLYLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEV 415 (1386)
T ss_pred hhHHHHHhccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Confidence 99999999999999999988 66677789999999999999999999999999999998877654 34999999
Q ss_pred HHHHHHHHhcChhHHHHHHHhcCCCCCCccHHHHHHHHHHHHhccCCCCCCCcccccccccchhchHHHHHHHHHHHHHH
Q 000274 463 VLRMIDKVCKDPQMLVDVYVNYDCDLEAPNLFERMVTTLSKIAQGTQNTDPNSVMVSQTTTIKGSSLQCLVNVLKSLVEW 542 (1739)
Q Consensus 463 ~Le~l~~l~~dp~~lvdiyvNYDCd~~~~nIfe~lv~~Lsk~a~~~~~~~~~~~~~~~~~~lk~~~L~~Lv~il~sl~~w 542 (1739)
++|.+-.+|+.|.+++++|+|||||++++||||++++.|+|.+....... ...++...+++.+.++...+.+-
T Consensus 416 ale~lv~~~R~p~F~~e~yvNfDCd~~csnlfedl~k~LtknafP~sg~~-------tt~~i~~l~l~~v~~l~e~~~~~ 488 (1386)
T KOG0928|consen 416 ALEALVLLCRIPSFLTEMYVNFDCDLYCSNLFEDLIKLLTKNAFPVSGPL-------TTASILPLDLEGVLGLAENMIDE 488 (1386)
T ss_pred HHHHHHHHHhccHHHHHHHHhcCCchhhhhhHHHHHHHHHHccCCccccc-------ccccccchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998432211 12234445555555555444332
Q ss_pred HHHhhhhhhcccCcchhhhhhccccccccccCCCCchhHHHHHhhhHHHHHHHHHHhcChhhhHHHHHHCCCCC--CChH
Q 000274 543 ERSRRETKKKNENSLSLAEEVNAKESVEIKSRDDVPDNFEKAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVD--NDPT 620 (1739)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~p~~~e~~k~~K~~l~~~i~~FN~~pkkGi~~L~~~g~i~--~~p~ 620 (1739)
.+..... +. -....+.--.+.+.+++|+.+..|++.||++|||||+||+++|+|+ .||.
T Consensus 489 l~~~d~~--ef-----------------~~~k~e~~v~~iR~rk~K~~li~gae~FNe~pkKGi~fL~ek~li~~~~d~~ 549 (1386)
T KOG0928|consen 489 LQDSDRE--EF-----------------WTDKCEVWVLFIRSRKRKRELILGAELFNEDPKKGIEFLQEKGLIPSDLDPT 549 (1386)
T ss_pred ccccCcC--cc-----------------ccCCcchhhhhhccchhhHHHHHHHHHhccChhhHHHHHHhcCccCCCCChH
Confidence 1111000 00 0000111122333344799999999999999999999999999998 5899
Q ss_pred HHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCCCCChHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHh
Q 000274 621 SVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCAD 700 (1739)
Q Consensus 621 ~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~~~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~rY~~~ 700 (1739)
.+|.||+.+++|||++||+|||++++ ..||++|++.|||+||++|+|||.||++||||||+|+|+|++|+|++||+.+
T Consensus 550 ~~~~ffr~n~rLdKk~iGdfLc~~k~--~~vLn~Fi~tFdF~gmrlDeALRl~L~sFRLPGESQ~IeRVlEAFSery~~~ 627 (1386)
T KOG0928|consen 550 SVAEFFRYNPRLDKKTIGDFLCDPKN--VSVLNEFIGTFDFQGMRLDEALRLFLESFRLPGESQKIERVLEAFSERYYSD 627 (1386)
T ss_pred HHHHHHHhCccccHHHHHHHhcCcch--HHHHHHHHHhcCcCCCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999996 8999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCCChhHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHhhhccCCCCccccHHHHHHHHHHhhcccccccchhhhhh
Q 000274 701 NP-GLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMNAVNDAEECASTELLEEIYDSIVKEEIKMKDDVAKSS 779 (1739)
Q Consensus 701 Np-~~f~sad~~yvLaysiimLnTdlHn~~vk~kMt~~~Fi~~n~~~d~~~~lp~e~L~~iY~~I~~~ei~l~~e~~~~~ 779 (1739)
|+ +.|.++|+||+|||||||||||.||||||++||++||+||+||+++|+|||+|||.+||.+|+.+||+||+++...
T Consensus 628 n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNlrg~n~g~DFpreyLseiY~SIk~~EIvmPee~hG~- 706 (1386)
T KOG0928|consen 628 NSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNLRGINGGKDFPREYLSEIYQSIKTNEIVMPEEHHGT- 706 (1386)
T ss_pred CCCccccccchhhhhhhhhheecccccChhhhccCCHHHHhhhcccccCCCCCCHHHHHHHHHHHhhcceecccccCCc-
Confidence 88 8999999999999999999999999999999999999999999999999999999999999999999998775211
Q ss_pred cccccccccccchhhhccccccccCccchhhhhHHHHHHHHHHHHhcCCccceEEecccccchHHHHHHhhhHHHHHHHh
Q 000274 780 RQKQEGEERGGLVGILNLALPKQKSSTDTKSESEAIVKQTQAIFRNQGVKRGVFYTSNRIELVRPMVEAVGWPLLAAFSV 859 (1739)
Q Consensus 780 ~q~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~l~k~~~~~~~~f~~a~~~~~v~~Mf~~~w~p~LaalS~ 859 (1739)
.-++ ...|-.++.+......-|.......+.|.||..+|.|.+||+++
T Consensus 707 ------------~~~~--------------------~~~W~~L~~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaals~ 754 (1386)
T KOG0928|consen 707 ------------EEMF--------------------EYRWINLISRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAALSY 754 (1386)
T ss_pred ------------hhhh--------------------HHHHHHHHhcccccCceeeccchhhhhHHHHHHHccchHHHHHH
Confidence 0000 01233344332233345555566689999999999999999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhhhccCCccc----h------hhhhHHHHHHHHhhhcc
Q 000274 860 TMEEGENKPRVALCMEGFKAGIHITQVLGMDTMRYAFLTSLVRFTFLHAPKE----M------RSKNVEALRTLLALCDT 929 (1739)
Q Consensus 860 ~l~~~~d~~~i~~cLeGf~~ai~ia~~~~l~~~Rdafi~sL~kft~L~~~~e----m------~~KNv~alkaLL~lA~~ 929 (1739)
.|+.+.++++.+.|++|++.++.|++.+|+....|..+.+|||||-|.+|.. + ..|--.|..+++-+|+.
T Consensus 755 vFd~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~~~eel~~~fged~ka~~At~tvf~~~n~ 834 (1386)
T KOG0928|consen 755 VFDVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSSTPEELVLAFGEDTKARMATLTVFFGANK 834 (1386)
T ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCccCchHHHHHhcccchhHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999998877651 1 24666899999999999
Q ss_pred CCChhhhhHHHHHHHHHHhHHhhcCCCc--------------cc----ccccCCCc------------------------
Q 000274 930 EPDSLQDTWNAVLECVSRLEFIMSTPAI--------------SA----TVMLGSNQ------------------------ 967 (1739)
Q Consensus 930 ~Gn~L~~SW~~IL~~is~Le~l~~~P~~--------------~~----~~~~~s~~------------------------ 967 (1739)
.|++++.+|+.|++|+.++.+++..|.. .. ....+.+.
T Consensus 835 ~Gd~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~ss~Lls~fs~~Ls~d~e~~~~ 914 (1386)
T KOG0928|consen 835 FGDLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNEPELLKLNKLPVPQQEISINKPRKSSGLLSRFSSYLSGDEEEERP 914 (1386)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcCccccccCCCCCCccccCcccccccchHHHHHHHhcCCcccccCC
Confidence 9999999999999999999887643321 00 00000000
Q ss_pred -cchhHH---HHHHHHhhcCchhhhhhcCCCCChhHHHHHHHHHHhhcHH-hhhcCCCccchHHHHHHHHHhcccccccc
Q 000274 968 -ISKDAV---VQSLKELAGKPAEQVFVNSVKLPSDSIVEFFNALCGVSAE-ELRQTPARVFSLQKLVEISYYNMARIRMV 1042 (1739)
Q Consensus 968 -~s~~~~---~~sl~e~~~~~id~IF~~S~~Ls~eAiv~Fv~ALc~vS~e-El~~s~pr~FsLqKLvEVa~~Nm~Rirl~ 1042 (1739)
.+.+.+ ...+..+-++.++++|++|+.|..+++.+++++|...+.. +......+.|++..|+.|...|.+||.+.
T Consensus 915 ~Ptee~l~~~~~a~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~s~~de~s~~F~lElli~I~l~nrdri~l~ 994 (1386)
T KOG0928|consen 915 CPTEEELSASKKALECIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDLSMEDEESAVFCLELLIAITLSNRDRILLS 994 (1386)
T ss_pred CCcHHHHhhhHHHhhHHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCccCcccchHHHHHHHHHHHHhccccceEee
Confidence 011111 1123345668899999999999999999999999988876 33345688999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhc--CchHHHHHHHHHHHH
Q 000274 1043 WARIWSVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRN--SRSETIRSLIVDCIV 1120 (1739)
Q Consensus 1043 W~~IW~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~--s~~~eVre~IL~cL~ 1120 (1739)
|....+.+-.-|+.--.. -..+...|+-.|.+++.+.+..++ ..-.++++++..+... +.....-+.+---+.
T Consensus 995 w~~~~e~ll~~~~~~~~~-~~~lvek~v~gl~rv~~rll~yk~----~l~d~l~~sl~~ll~L~~ki~d~~~~ki~i~~~ 1069 (1386)
T KOG0928|consen 995 WFAVYEHLLGLLIQTLMG-SPLLVEKAVSGLLRVVNRLLPYKE----FLSDELLDSLRILLKLDPKILDAFLDKIAIFVS 1069 (1386)
T ss_pred ehhhHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHHHHhhhhh----hhhHHHhhhHHHHHhhcHHHHHHHHHHHHHHHH
Confidence 876555544444432221 224566788888889999887544 2236788999887654 234566777888889
Q ss_pred HHHHhccCCccc--CcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHH
Q 000274 1121 QMIKSKVGSIKS--GWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLK 1198 (1739)
Q Consensus 1121 qmI~~~~~~IkS--GWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~ 1198 (1739)
+++.++..++++ ||+++|..|..+++.+.++. .+|..+.-.+.| =..++.+.|.-||+|...|+....-+. ..
T Consensus 1070 ~lv~~n~~~v~~~~~w~~~~slL~~~~~h~~a~~--~~~~~~l~~m~e-~~hl~~~~fe~~v~~~~~fve~~~~~~--~~ 1144 (1386)
T KOG0928|consen 1070 KLVKANAANVHSKDGWALLFSLLELTARHPEADF--LKFYRLLSKMSE-ASHLTPDNFELYVDCGSTFVEARVGQI--MR 1144 (1386)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhcCCchhH--HHHHHHHHHhhc-cccCChHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 999999998876 99999999999999776543 334433333332 234567999999999999997632100 11
Q ss_pred HHHhHHHHHHHhhcccCCCCCCCC-CCccc--cCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCC
Q 000274 1199 AIALLRICEDRLAEGLIPGGDLKP-IDVET--DATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKF 1275 (1739)
Q Consensus 1199 AI~lLw~~~d~L~~~~~~~~~~~~-~~~~~--~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G~~f 1275 (1739)
.+..|...++....+.-.....+. ..... .........+|.+|+..+.++|.++|.+||+.||+.+.+++..-+..+
T Consensus 1145 ~l~~lde~s~sg~~~~kw~~~~~~~~~~~~~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr~~~~~~q~l 1224 (1386)
T KOG0928|consen 1145 SLSLLDEMSSSGEVLDKWEIEAKNATESGDESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQRIIGALDQGL 1224 (1386)
T ss_pred hcchhhhhcccccchhHHHHHHhhhhcccccccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 111111111111000000000000 00000 001111234999999999999999999999999999999877888999
Q ss_pred CHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHhhcC---
Q 000274 1276 SASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVC--FMLPPLLSLLLDCAKK--- 1350 (1739)
Q Consensus 1276 ~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~--~~L~~~l~lL~~cI~q--- 1350 (1739)
.+..|..||..|+||+++.+.....+. .....-|..|..++.+.++++|.+++..+. .++..+|-.+..++-+
T Consensus 1225 ~~~~~~~Cf~~vlfpll~~l~~~l~~~--~~~~~~me~t~~~~~~Ll~k~~L~~lq~ls~~~~f~~Lwl~~ld~m~~l~~ 1302 (1386)
T KOG0928|consen 1225 AHSYWNPCFDLVLFPLLTDLLELLSDA--SEKGNEMEVTLLLATKLLSKVFLQELQDLSSLSMFSTLWLGVLDRMEKLMR 1302 (1386)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHhccc--ccccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999987543211 111115689999999999999999999987 4677787666655521
Q ss_pred ------CChhHHHHHHHHHHHHHHH
Q 000274 1351 ------PDQSVVSISLGALVHLIEV 1369 (1739)
Q Consensus 1351 ------~ne~ia~ig~~cL~~Li~~ 1369 (1739)
..+.+-.+...-+++.+..
T Consensus 1303 ~~~~e~~~~~l~e~~pe~l~~~~~~ 1327 (1386)
T KOG0928|consen 1303 GKTSEETSDKLNEIVPELLKNMLLV 1327 (1386)
T ss_pred cccccchhhhHHhhhhhhhhhhhhh
Confidence 2356677777777766554
No 4
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=100.00 E-value=2.5e-86 Score=854.75 Aligned_cols=933 Identities=25% Similarity=0.338 Sum_probs=740.1
Q ss_pred HHHHhccCCCCC-------chhhhhhhHHHHHHHHHHHhcCCcccccChhhHHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q 000274 351 RTLCKMGMKEDS-------DEVTTKTRILSLELLQGLLEGVSHSFTKNFHFIDSIKAYLSYALLRASVSQSSVIFQYATG 423 (1739)
Q Consensus 351 r~LCkLs~k~~~-------~~~~~rsk~lsLeLl~~iL~~~~~~f~~~~~f~~~ik~~Lc~~Llrn~~S~~~~vF~lsl~ 423 (1739)
|.+|+...+..+ ..+.+|+++.+|+++.++|+.+. .|+.++++|+|..+.++++|+..+||++++.
T Consensus 2 ~~~~~~~i~~~~~~~~~n~~s~~~r~~l~~l~~~~~~l~~~~-------~l~~~~~~~~~l~~~~~a~s~~~~v~~v~~~ 74 (1024)
T COG5307 2 RVLLVSQISNAPLKNSSNAPSQAVRSKLYSLPVSYSILRDFK-------LLLDLLFPYLRLKLSLSARSPLLPVFEVGLE 74 (1024)
T ss_pred chHHHHHHhhccccccccchhhhcccccccccchHHHhccch-------HHHHHhcchhhhhhhhcccccchhhhhhhHH
Confidence 556665544222 13688999999999999999887 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHHHhcChhHHHHHHHhcCCCCC-CccHHHHHHHH
Q 000274 424 IFSVLLLRFRESLKGEIGVFFPLIVLRSLDGSD--NNQKTSVLRMIDKVCKDPQMLVDVYVNYDCDLE-APNLFERMVTT 500 (1739)
Q Consensus 424 If~~Ll~~~r~~Lk~Eievfl~~i~l~~Le~s~--~~qK~~~Le~l~~l~~dp~~lvdiyvNYDCd~~-~~nIfe~lv~~ 500 (1739)
|+|.++..++..++.|+++||..++..+++... ..||.+-|-..+++|..|+ ++.|+||||... +.|++++....
T Consensus 75 i~~~~~~~~~~~f~~~~~~~f~s~~f~i~~~~~~s~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~~~ 152 (1024)
T COG5307 75 IIGLRLSNLPKLFKLESSVFFISIYFPISHTTSTSLQQKSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTAFP 152 (1024)
T ss_pred HHHHHHhhhhhhhhhccchHHHHHhhhhhcccccchhhhhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccCCc
Confidence 999999999999999999999999999988643 8999999999999999999 999999999998 89999999999
Q ss_pred HHHHhccCCCCC----------------CCcccccccccchhchHHHHHHHHHHHHHHHHHhhhhhh--cccCcch-h-h
Q 000274 501 LSKIAQGTQNTD----------------PNSVMVSQTTTIKGSSLQCLVNVLKSLVEWERSRRETKK--KNENSLS-L-A 560 (1739)
Q Consensus 501 Lsk~a~~~~~~~----------------~~~~~~~~~~~lk~~~L~~Lv~il~sl~~w~~~~~~~~~--~~~~~~~-~-~ 560 (1739)
+++.+....... +.......++..+.....|.+++++++.. ....... .....+. . +
T Consensus 153 ~s~~~t~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~---~sl~~s~~~~~~~~~~~s~e 229 (1024)
T COG5307 153 LSRPSTNDPPETRSLIIEQLSILWISSPYFFLTLISDFQCDLDSSDCSISFLKGLTK---NSLVPSAYYTNKDVPPLSGE 229 (1024)
T ss_pred cccccccCCCcchhhhhhhhhhcCCCCCccccccccchhhhhHHHHHHHHHHHHHhh---cccchhhhhcccCCCCcccc
Confidence 988774332110 00011133567788889999999998852 1110000 0000000 0 0
Q ss_pred hhhccccc--cccc-cCC--------CCchhHHHHHhhhHHHHHHHHHHhcChhhhHHHHHHCCCCC-CChHHHHHHHHh
Q 000274 561 EEVNAKES--VEIK-SRD--------DVPDNFEKAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVD-NDPTSVAQFLRN 628 (1739)
Q Consensus 561 ~~~~~~~~--~~~~-~~~--------d~p~~~e~~k~~K~~l~~~i~~FN~~pkkGi~~L~~~g~i~-~~p~~iA~FL~~ 628 (1739)
..++...+ .... +.. +.--.....|+||+.+++++..||.+|++|+..|.+.+++. +.+.++|.||..
T Consensus 230 ~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~~d~~~sia~~L~~ 309 (1024)
T COG5307 230 GLVSGSKSMVNSMKNSSRDSSSFVNSDSSIVNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFIDSDSHKSIAEILEG 309 (1024)
T ss_pred hhhhcCCcccccccccccChhhhccchHHHhhhccccchHHHHHHHHHhhhcCcccchhhcccccCCcccchHHHHHHHh
Confidence 00111000 0000 011 11123345889999999999999999999999999999998 458999999998
Q ss_pred cCC-CChHHHHhhhcCCCChHHHHHHHHHHcCCCCCCChHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCC
Q 000274 629 AAN-LDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKN 707 (1739)
Q Consensus 629 ~~~-Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~~~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~rY~~~Np~~f~s 707 (1739)
+.+ +||+.+|+|||+++..|..||++|+++|||+|++||+|||.||++||||||+|+||||||+||.+||+|||..|.+
T Consensus 310 ~~~~l~k~~lg~~L~~~~~kn~~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~~ 389 (1024)
T COG5307 310 TEGRLDKKKLGLYLGTDDDKNNAVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSS 389 (1024)
T ss_pred ccCcccHHHHHHHhcCCchhHHHHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCcccccC
Confidence 765 9999999999999989999999999999999999999999999999999999999999999999999999999998
Q ss_pred h-hHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHhhhccCCCCccccHHHHHHHHHHhhcccccccchhhhhhccccccc
Q 000274 708 A-DTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMNAVNDAEECASTELLEEIYDSIVKEEIKMKDDVAKSSRQKQEGE 786 (1739)
Q Consensus 708 a-d~~yvLaysiimLnTdlHn~~vk~kMt~~~Fi~~n~~~d~~~~lp~e~L~~iY~~I~~~ei~l~~e~~~~~~q~~~~~ 786 (1739)
+ |+||+||||+||||||+|||++|.|||++||++|++|.+.|.++|++||..+|+.|+++||++++++...... + +
T Consensus 390 ~~D~vyiLafSlimLNTDlHNp~iK~kMT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~~~~~~-~--~ 466 (1024)
T COG5307 390 KPDSVYILAFSLIMLNTDLHNPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHHSSETS-P--E 466 (1024)
T ss_pred ccceeehhHHHHHHHhccccChhhhccccHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhccccccc-c--c
Confidence 8 9999999999999999999999999999999999999999999999999999999999999999987321100 0 0
Q ss_pred ccccchhhhccccccccCccchhhhhHHHHHHHHHHHHhcCCccceEEecccccchHHHHHHhhhHHHHHHHhhhhcCCC
Q 000274 787 ERGGLVGILNLALPKQKSSTDTKSESEAIVKQTQAIFRNQGVKRGVFYTSNRIELVRPMVEAVGWPLLAAFSVTMEEGEN 866 (1739)
Q Consensus 787 ~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~l~k~~~~~~~~f~~a~~~~~v~~Mf~~~w~p~LaalS~~l~~~~d 866 (1739)
..+.+. ..+..+.. -+ +.+......+++.+|+.+++++.|+|++++++-.+..++.
T Consensus 467 -----~~~~~~------------~ss~~~~~----~~---~rd~~~~~~~~~f~~v~~~~et~~~~i~~s~s~~~~~s~~ 522 (1024)
T COG5307 467 -----DNWPSL------------DSSFTNIA----EF---GRDNQRVADATHFDHVGPIFETSLFPILMSASDDLYSSDG 522 (1024)
T ss_pred -----ccchhh------------hhhhhhhh----hc---ccccccchhHhhhhhcchHHHHHHHHHHhhhcchhccccc
Confidence 000000 00000000 00 0111222356778999999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhhhccCCccchhhhhHHHHHHHHhhhccCCChhhhhHHHHHHHHH
Q 000274 867 KPRVALCMEGFKAGIHITQVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLALCDTEPDSLQDTWNAVLECVS 946 (1739)
Q Consensus 867 ~~~i~~cLeGf~~ai~ia~~~~l~~~Rdafi~sL~kft~L~~~~em~~KNv~alkaLL~lA~~~Gn~L~~SW~~IL~~is 946 (1739)
...+.+|.+ +|+.|++..+|++|+.+++++|.+++.. .++|+++...|.+++.+++
T Consensus 523 ~~si~~~~~-------ia~~f~~n~p~~~~~~~~s~~t~l~~~S-----------------~~~~~~~~~~~~d~~~~is 578 (1024)
T COG5307 523 VVSISKCTR-------IAANFDFNDPRDAFLESLSEFTTLINSS-----------------VSEGPYLFIPSEDSLLSIS 578 (1024)
T ss_pred chHhhcccc-------hhhcceecchhHHHHHHhhccCCccccC-----------------ccccccccCccccccchhh
Confidence 888887776 9999999999999999999999887554 7889999999999999999
Q ss_pred HhHHhhc--------CCCcccccccC---------CCccch------h----HHHH--------HH----HHhhcCchhh
Q 000274 947 RLEFIMS--------TPAISATVMLG---------SNQISK------D----AVVQ--------SL----KELAGKPAEQ 987 (1739)
Q Consensus 947 ~Le~l~~--------~P~~~~~~~~~---------s~~~s~------~----~~~~--------sl----~e~~~~~id~ 987 (1739)
+++..+. .|++......+ ++++.- . .+.. .. ...+....++
T Consensus 579 ~~~~~~~i~~~~~~ql~~v~~~~~~~k~~~~~i~~s~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1024)
T COG5307 579 VLELAARIGRGFEDQLSDVKLFRLRSKSGNKEILSSSLLSNIENKSLKLYLSSLIEDGKHFSPSIVKKLGSPELPKLNPD 658 (1024)
T ss_pred HHHHHHHhcccchhhcchhHHhHHhhccccccccchhhhhhhhhhHhhhhhhhhcCCCccccccccccccCccccccCcc
Confidence 9988762 12221111100 000000 0 0000 00 0112234678
Q ss_pred hhhcCCCCCh-hHHHHHHHHHHhhcHHhhhcCCCccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcCCCCHHHH
Q 000274 988 VFVNSVKLPS-DSIVEFFNALCGVSAEELRQTPARVFSLQKLVEISYYNMARIRMVWARIWSVLANHFISAGSHHDEKIA 1066 (1739)
Q Consensus 988 IF~~S~~Ls~-eAiv~Fv~ALc~vS~eEl~~s~pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~~hf~~vg~~~n~~va 1066 (1739)
++.....++. .++++++++++.... .+| .+|+.++++++||.||+.+ ..||.++...+..++++.+..+.
T Consensus 659 i~~~~s~~s~~~~~l~~~k~~~~~d~-----~~~---~~q~~v~~s~~n~~~i~~~-~~i~~~~~~~~~~~~~~~~~~l~ 729 (1024)
T COG5307 659 ISSGKSKLSVWSAVLSVFKAILSSDL-----PSP---PLQKEVDISKKNVDIIKSE-SKISNVLFKNSEGLSPDLNKTLL 729 (1024)
T ss_pred cccccccccccchHHHHHHHHHhccC-----CCC---CcHHhhhHHhhhhhhhhhh-hHHHhhcccchhhccccccccch
Confidence 9999999999 899999999999221 233 9999999999999999987 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhc
Q 000274 1067 MYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAAD 1146 (1739)
Q Consensus 1067 ~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~ 1146 (1739)
.+++|+.+|++++|++.+|+.++.||..|+.|+++.+.......|++..+.|..++++++...+.+| +++|.++..+..
T Consensus 730 ~s~~~~~~q~s~~f~~iee~~~~~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~~s~-~~i~~~~~~~~~ 808 (1024)
T COG5307 730 ESALDSKSQLSSRFLEIEELSDFGFQIALLLPFEYSVEVSLVVAVKELVIGCSDNLLTEAASSIASG-KTIFEISAYEDL 808 (1024)
T ss_pred hcccchhhhhccccCChhhhcchhHHHHHhccccccccccceeeeeeeehhhHHHHHHHHHHhhhcc-ccceeeeecccc
Confidence 9999999999999999999999999999999999999888889999999999999999999999999 999999988765
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCcc
Q 000274 1147 DEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVE 1226 (1739)
Q Consensus 1147 d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~ 1226 (1739)
... +...++.+.. +.+..-..++|.+++-+-.....+.+++.+.+.+.++++.....+.....- ..
T Consensus 809 ~~~---~~~~~s~~~~---~e~v~s~~n~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~--------~~ 874 (1024)
T COG5307 809 SST---LRYILSSLSN---DELVLSQENLFIELLSSKNEGKQNDKNLELRLHSVDYLRFLLPNVENWKNL--------SS 874 (1024)
T ss_pred cch---hhhHHHHhcc---hhhhhChhhHHHHHHhhhHHHHHhccchhhhhccHHHHHHHhHHHHHHHHH--------HH
Confidence 432 4445554422 111111238999999999999999999999999999988776666542100 00
Q ss_pred ccCccchhhhchHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhh--ccccc
Q 000274 1227 TDATFDVTEHFWFPMLAGLSDLTS-DPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHA--GKESL 1303 (1739)
Q Consensus 1227 ~~~~~~~~~~lW~pLL~~Ls~l~~-D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~--~~~~~ 1303 (1739)
.....+...+.|+++|.++.++.+ -...++ |..+..++..|..++|+.|++.-++|++....-. ++...
T Consensus 875 ~~~~~~~~~~~~~~~l~~~~~i~~~~~~l~~--------f~~~l~~~d~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~ 946 (1024)
T COG5307 875 VLSANSNFSKDIFSYLEKYVKIGSSALDLEN--------FDQLLSLLDDFMSAFWEKISKKESFYIKSGASGPNSDKTNL 946 (1024)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhchhhhhHHH--------HHHHHHhhhHHHHHHHHHHhhhhhheeccccccCccccccc
Confidence 001112236799999999999976 467777 9999999999999999999999999999887632 22211
Q ss_pred c--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCCCCHhhHHH
Q 000274 1304 I--SSEDEWFRETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDT 1381 (1739)
Q Consensus 1304 ~--~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~~~~~f~~~~W~~ 1381 (1739)
. ...-+|+.++...|+...+.+|+.+|+.+. ++++.+.++..| .+|.+++...+...|.+-.|++
T Consensus 947 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~-~~~~~~~l~~~c------------~~~~~~~~~~~~~~~~~~~~n~ 1013 (1024)
T COG5307 947 DNDEIELVWASTDLLAALKEFIELFNSIFEKLE-ILAGKLILLHQC------------LNNCDQLGLGAIETLEEILWNK 1013 (1024)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh------------cCcHhhhhhhhHHHHhhhhHHH
Confidence 1 123589999999999999999999999999 999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHh
Q 000274 1382 LLKSIRDASY 1391 (1739)
Q Consensus 1382 i~~~~~~~~~ 1391 (1739)
+-..+.++|+
T Consensus 1014 ~~~~~~~~~~ 1023 (1024)
T COG5307 1014 IDVPTNELFY 1023 (1024)
T ss_pred hhcccchhcc
Confidence 9988887765
No 5
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3e-64 Score=632.87 Aligned_cols=980 Identities=20% Similarity=0.237 Sum_probs=653.0
Q ss_pred cccHHHHHHHHh--hccC-CCChhHHHHHHHHHHHhhhcCCCCCCccccccccCCCCCCccccccccccccccccCcccc
Q 000274 5 GFVSRAFESMLK--ECSG-KKFPDLQKAIQTYLDNAKEVKPPASSETSEATASAGDGSSIETEAGAAEKGTEAVQLPAEQ 81 (1739)
Q Consensus 5 ~~~~~ale~i~~--~~~~-kk~~~l~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1739)
|=++|||+.-|. +.|+ |||+.+++|.+.++..|+...... . +++.+.
T Consensus 9 ~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s------------~-------------ds~vle----- 58 (1610)
T KOG1848|consen 9 MSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSAS------------R-------------DSDVLE----- 58 (1610)
T ss_pred HHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhcccc------------c-------------cccccc-----
Confidence 446788887653 2344 569999999999999999764311 0 111110
Q ss_pred ccccCcccccchhHHHHHhhhCCCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHHhhcCcccCCCCCCCCCCcchH
Q 000274 82 TEHIGKTVGVSGSVATALANAGHTLEAADAELVLNPLRLAIETKNLKLLESALDCLHKLIAYDHLEGDPGLNGGKNAPLF 161 (1739)
Q Consensus 82 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~d~~~if~Pf~lAc~sks~ki~~~ALdclqKLis~~~i~~~~~~~~~~~~~li 161 (1739)
. . -+++..||++||.+|++|++.+||.|||||+.|+.++.+. .....
T Consensus 59 -----t---------------------~-~edf~~PfllaC~sr~tRl~~ials~iQkL~~~dsleps~------~aeil 105 (1610)
T KOG1848|consen 59 -----T---------------------P-NEDFLVPFLLACISRNTRLFVIALSCIQKLGRHDSLEPSV------TAEIL 105 (1610)
T ss_pred -----c---------------------C-CcccccceeeecccCcccceeeHHHHHHHHhccCCCCCcc------cHHHH
Confidence 0 0 2478999999999999999999999999999999998641 12344
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHHHHhccccccccchhHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHHHhc
Q 000274 162 TDILNMVCGCVDNSSSDSTILQVLKVLLTAVASAKFRVHGEPLLGVIRVCYNISLNSKSPINQATSKAMLTQMVSIVVRR 241 (1739)
Q Consensus 162 ~~iv~tI~~c~~~~~~d~v~LQIlkaLlt~V~s~~~~vhg~~LlkaVrtcyni~l~Sks~~nq~tA~aTLtQmv~~VF~R 241 (1739)
+.-+++... . +.+||++++..+-++.++-..+.|..|++++++|||++. +|++++-++|.||++|+|..||+|
T Consensus 106 dn~L~a~~q---a---e~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~-~knkvV~NaAaAtlrQlV~~vFdr 178 (1610)
T KOG1848|consen 106 DNNLWAAAQ---A---EWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLY-QKNKVVFNAAAATLRQLVLLVFDR 178 (1610)
T ss_pred HHHHHHHHH---H---HHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHc-CCCcceechhHHHHHHHHHHHHHh
Confidence 554544333 2 678999999999999999888999999999999999988 888899999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCcCcCCCCCcccccCCCCCCCCcccccccccCCCCCchhhhhhccCCCCccchhhhhhhhh
Q 000274 242 MENDQVSTLPTSSGHTETSSADDASRMPEETTLGDKNKDGMTLGDALTQAKDTPIASVEELHNLAGGADIKGLEAVLDKA 321 (1739)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1739)
|......... . ++....+..
T Consensus 179 v~ies~~~d~---------~----------------------------------------l~sl~~~s~----------- 198 (1610)
T KOG1848|consen 179 VPIESDAFDF---------I----------------------------------------LPSLTEASG----------- 198 (1610)
T ss_pred cccccccccc---------c----------------------------------------chhhhccCC-----------
Confidence 9843211000 0 000000000
Q ss_pred cccccCcccccCCcccccChhhhHHHHHHHHHHhccCCCCCc---hhhhhhhHHHHHHHHHHHhcCCcccccChhhH--H
Q 000274 322 VHLEDGKKITRGIDLESMSIGQQDALLVFRTLCKMGMKEDSD---EVTTKTRILSLELLQGLLEGVSHSFTKNFHFI--D 396 (1739)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~kDAflvFr~LCkLs~k~~~~---~~~~rsk~lsLeLl~~iL~~~~~~f~~~~~f~--~ 396 (1739)
....... ....+++++|++..|..+|.+.....+. .+..-++..++|++++++.+....+..+..|. +
T Consensus 199 ----t~sl~aa---~~~~~~l~~dI~~~~~~i~l~~~~~~~~~L~~Iee~~~s~~~elLesilks~~s~~dq~qdf~~a~ 271 (1610)
T KOG1848|consen 199 ----TSSLEAA---LTALDPLQKDICVGFENIQLMYPAIFDQLLAFIEESTKSPGLELLESILKSNASKSDQIQDFAPAE 271 (1610)
T ss_pred ----ccchhhc---ccccchHHHhHhcchHHHHHhcccccHhHHhcchhccccchhhhhhhhhhcchhhhHHHHHhhHHH
Confidence 0000000 0134789999999999999876655443 23456688999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH-HHHHHhHHH------------------------------------
Q 000274 397 SIKAYLSYALLRASVSQSSVIFQYATGIFSVLLL-RFRESLKGE------------------------------------ 439 (1739)
Q Consensus 397 ~ik~~Lc~~Llrn~~S~~~~vF~lsl~If~~Ll~-~~r~~Lk~E------------------------------------ 439 (1739)
+++...||.+.|... .+++++..+.. .+-...+.+
T Consensus 272 ll~~~~~Py~~Rl~~--------~sv~~i~~l~~~ea~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v 343 (1610)
T KOG1848|consen 272 LLALNVVPYAERLLL--------RSVDLIQKLACHEAVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSV 343 (1610)
T ss_pred HHHhhhHHHHHHHHH--------HHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHH
Confidence 999999999888732 22222222222 122222222
Q ss_pred ----------HHHHHHHHHhhcCCC-CChhhHHHHHHHHHHHhcChhHHHHHHHhcCCCCCCccHHHHHHHHHHHHhccC
Q 000274 440 ----------IGVFFPLIVLRSLDG-SDNNQKTSVLRMIDKVCKDPQMLVDVYVNYDCDLEAPNLFERMVTTLSKIAQGT 508 (1739)
Q Consensus 440 ----------ievfl~~i~l~~Le~-s~~~qK~~~Le~l~~l~~dp~~lvdiyvNYDCd~~~~nIfe~lv~~Lsk~a~~~ 508 (1739)
.++|+...+ +.-.. .+.||+.+++++++++|.++..+..++.|+||++...+++++.+--+..+++
T Consensus 344 ~l~~~~i~v~~~v~la~~l-k~~s~~~~~~p~~l~~~~~~siv~k~dsi~~~trn~diktk~thlldk~~~plan~vy-- 420 (1610)
T KOG1848|consen 344 LLYVLSIGVPVAVFLASLL-KFDSMDLELWPRFLDFLFLKSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFVY-- 420 (1610)
T ss_pred heeecccCcchhhhHHHHh-hhhhcCcccCccHhHHHhhccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhHH--
Confidence 223332222 11111 2389999999999999999999999999999999999999988777766554
Q ss_pred CCCCCCcccccccccchhchHHHHHH-HHHHHHHHHHHhhhhhhcccCcchhhhhhccccccccccCCCCchhHHHHHhh
Q 000274 509 QNTDPNSVMVSQTTTIKGSSLQCLVN-VLKSLVEWERSRRETKKKNENSLSLAEEVNAKESVEIKSRDDVPDNFEKAKAH 587 (1739)
Q Consensus 509 ~~~~~~~~~~~~~~~lk~~~L~~Lv~-il~sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~p~~~e~~k~~ 587 (1739)
.||+. +-.++.+...+... ++.+..|.
T Consensus 421 ---------------------~~lv~ti~nsi~e~l~k~s~--------------------------esg~~eFt----- 448 (1610)
T KOG1848|consen 421 ---------------------KELVGTISNSIQEMLNKSSI--------------------------ESGGSEFT----- 448 (1610)
T ss_pred ---------------------HHHHHhhhHHHHHHHHHhHH--------------------------hhcCccch-----
Confidence 12222 22233221110000 00011111
Q ss_pred hHHHHHHHHHHhcChhhhHHHHHHCCCCCCChHHHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCCCCChH
Q 000274 588 KSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGMKFD 667 (1739)
Q Consensus 588 K~~l~~~i~~FN~~pkkGi~~L~~~g~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~~~i~ 667 (1739)
. -.+||++- -+.+.. .-+++.. ++|.
T Consensus 449 ------------~-k~k~Ie~~-----~dnds~---------------------------stavl~~----l~~~----- 474 (1610)
T KOG1848|consen 449 ------------S-KEKGIELR-----EDNDSM---------------------------STAVLLQ----LSFS----- 474 (1610)
T ss_pred ------------h-hhcCceee-----ccCchH---------------------------HHHHHHH----HHhh-----
Confidence 0 01222221 000100 0111111 0000
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHhhhccCC
Q 000274 668 TAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMNAVND 747 (1739)
Q Consensus 668 ~ALR~fL~~frLPgEaQ~IdRime~Fa~rY~~~Np~~f~sad~~yvLaysiimLnTdlHn~~vk~kMt~~~Fi~~n~~~d 747 (1739)
-+.-+|.-. ....++||+... +-.+|-.
T Consensus 475 -----------------------------~~~li~e~~----~ss~~avSt~~~-------------~a~~v~~------ 502 (1610)
T KOG1848|consen 475 -----------------------------NKVLIPEGL----YSSRMAVSTLLK-------------RAQDVLH------ 502 (1610)
T ss_pred -----------------------------hhhhccccc----hhhhHHHHHHHH-------------HHHHHHH------
Confidence 001222211 122344444321 1112211
Q ss_pred CCccccHHHHHHHHHHhhcccccccchhhhhhcccccccccccchhhhccccccccCccchhhhhHHHHHHHHHHHHhcC
Q 000274 748 AEECASTELLEEIYDSIVKEEIKMKDDVAKSSRQKQEGEERGGLVGILNLALPKQKSSTDTKSESEAIVKQTQAIFRNQG 827 (1739)
Q Consensus 748 ~~~~lp~e~L~~iY~~I~~~ei~l~~e~~~~~~q~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~~~~~~~l~k~~~ 827 (1739)
+|-. .+....+ .
T Consensus 503 ------------l~~~--~~~~s~k--------------~---------------------------------------- 514 (1610)
T KOG1848|consen 503 ------------LYIE--DEVLSNK--------------C---------------------------------------- 514 (1610)
T ss_pred ------------Hhhh--hhhhccC--------------C----------------------------------------
Confidence 1111 0000000 0
Q ss_pred CccceEEecccccchHHHHHHhhhHHHHHHHhhhhcCCChhHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhhhccC
Q 000274 828 VKRGVFYTSNRIELVRPMVEAVGWPLLAAFSVTMEEGENKPRVALCMEGFKAGIHITQVLGMDTMRYAFLTSLVRFTFLH 907 (1739)
Q Consensus 828 ~~~~~f~~a~~~~~v~~Mf~~~w~p~LaalS~~l~~~~d~~~i~~cLeGf~~ai~ia~~~~l~~~Rdafi~sL~kft~L~ 907 (1739)
....-+..+..+-|....|..++.+++..+..+.|..+....+.++...+..+|..+-+++..+++.+|++|+...
T Consensus 515 ----~l~~~~kLe~i~~a~~snq~tildalks~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s 590 (1610)
T KOG1848|consen 515 ----PLPRQTKLEIIFDAVLSNQSTILDALKSTLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFS 590 (1610)
T ss_pred ----ccccceeehhHHHHHhhccccHHHHhhhhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCC
Confidence 0000011234555566778889999999999999999999999999999999999999999999999999987432
Q ss_pred C-----------------------------------------------------ccchhhhhHHHHHHHHhhhccCCChh
Q 000274 908 A-----------------------------------------------------PKEMRSKNVEALRTLLALCDTEPDSL 934 (1739)
Q Consensus 908 ~-----------------------------------------------------~~em~~KNv~alkaLL~lA~~~Gn~L 934 (1739)
. +..++.||++++|++++++..+-+.+
T Consensus 591 ~r~vs~lr~l~s~Spv~gr~~~sew~~dfetw~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy 670 (1610)
T KOG1848|consen 591 PRPVSRLRCLNSESPVVGRKMGSEWKIDFETWDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSY 670 (1610)
T ss_pred ccHHHHHhhccccCccccccCCcceEEEEeeccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhh
Confidence 1 12467999999999999999999999
Q ss_pred hhhHHHHHHHHHHhHHhhcC-CCccccc-cc--CCCc-cchhHHHHHHHH--hhcCchhhhhhcCCCCChhHHHHHHHHH
Q 000274 935 QDTWNAVLECVSRLEFIMST-PAISATV-ML--GSNQ-ISKDAVVQSLKE--LAGKPAEQVFVNSVKLPSDSIVEFFNAL 1007 (1739)
Q Consensus 935 ~~SW~~IL~~is~Le~l~~~-P~~~~~~-~~--~s~~-~s~~~~~~sl~e--~~~~~id~IF~~S~~Ls~eAiv~Fv~AL 1007 (1739)
+.+|..++.+.+.|++.... |...... .. +.+. .+.....++..+ ++....+++|.++++++..+....++||
T Consensus 671 ~~sw~llm~t~~~ls~~~~m~p~qt~l~v~t~~~~hp~~p~~~~~~~ynd~~~lssl~~~v~~~~a~~~~ss~~slL~al 750 (1610)
T KOG1848|consen 671 KNSWSLLMYTTSSLSQPAYMEPLQTLLAVITSSSVHPIQPLTAPRQSYNDDLLLSSLKNSVYKTSANRSISSGISLLRAL 750 (1610)
T ss_pred cchHHHHHHHHHHhcchhhcCHHHhhHHHHhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 99999999999988865432 3211000 00 0000 011111122221 2334578899999999999999999999
Q ss_pred HhhcHHhhhc------CCCcc--chHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HH
Q 000274 1008 CGVSAEELRQ------TPARV--FSLQKLVEISYYNMARIRMVWARIWSVLANHFISAGSHHDEKIAMYAIDSLRQL-SM 1078 (1739)
Q Consensus 1008 c~vS~eEl~~------s~pr~--FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~~hf~~vg~~~n~~va~~AiDsLrQL-s~ 1078 (1739)
.+++.+-+-. +.-|. +-++-.+-.+..|-.|-.. -|....+||.+.+||--.++... +++.++. +.
T Consensus 751 i~ls~~sli~~~~~~~sslr~~~~~l~v~~~~~~l~e~snq~----~~~naa~~l~t~~n~vl~s~~~~-~asals~da~ 825 (1610)
T KOG1848|consen 751 IELSYSSLILETVCSCSSLRFLDSKLDVSGWSLILKELSNQF----KIINAAPELRTRANNVLASILVD-VASALSNDAS 825 (1610)
T ss_pred HHHHHHHHHHHhhccccccccccchhhhhHHHHHHHHhhhHH----HHHHhHHHHHHHHHHHHHHHHhh-hhhhhhcccc
Confidence 9999875432 11222 2222222222222222221 24455566666555532222211 1222111 10
Q ss_pred HHh-hhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcc---hhHHHHH
Q 000274 1079 KYL-ERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADD---EVESIVE 1154 (1739)
Q Consensus 1079 kfL-e~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d---~~e~iV~ 1154 (1739)
+-. .+.+ -+++-|-.++-.++.....++..|+|---++||..++++.|+.+-+||..||++++.++.. .+.++|+
T Consensus 826 ~dv~sk~t-i~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivr 904 (1610)
T KOG1848|consen 826 PDVYSKQT-IFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVR 904 (1610)
T ss_pred cchhccce-eeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHH
Confidence 000 0000 1234445555555555556788999999999999999999999999999999999987753 3789999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCC----CCCC---CCCccc
Q 000274 1155 SAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPG----GDLK---PIDVET 1227 (1739)
Q Consensus 1155 ~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~----~~~~---~~~~~~ 1227 (1739)
+||+++++|++||++++|.+|+.+||+++..|++|+.|+||||+||++||.++|+++.....- ++.+ ...++.
T Consensus 905 lgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~ 984 (1610)
T KOG1848|consen 905 LGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSM 984 (1610)
T ss_pred hhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999998732111 1111 111222
Q ss_pred cCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhccc--cccc
Q 000274 1228 DATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKE--SLIS 1305 (1739)
Q Consensus 1228 ~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~--~~~~ 1305 (1739)
......++.+|+.||..|+++|.|+|+|||++|.||||+|+.+||+.|++..|+.|||+|++|+++..+..... +...
T Consensus 985 ~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngke 1064 (1610)
T KOG1848|consen 985 KSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKE 1064 (1610)
T ss_pred cchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchh
Confidence 23334578999999999999999999999999999999999999999999999999999999999977543211 0011
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 000274 1306 SEDEWFRETSIHSLQLLCNLFNTFYKEVCFM------LPPLLSLLLDCAKKPDQSVVSISLGALVHLIEV 1369 (1739)
Q Consensus 1306 ~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~------L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~ 1369 (1739)
-+++| .||++++++|++++|..||..|..+ +..++..|-+.++..+..++-.++.|||.++..
T Consensus 1065 iqkqw-tet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1065 IQKQW-TETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred Hhhhh-hhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 24899 9999999999999999999998742 334455555666889999999999999999987
No 6
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-50 Score=436.85 Aligned_cols=194 Identities=44% Similarity=0.777 Sum_probs=190.0
Q ss_pred HHHhhhHHHHHHHHHHhcChhhhHHHHHHCCCCCCChHHHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCC
Q 000274 583 KAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFS 662 (1739)
Q Consensus 583 ~~k~~K~~l~~~i~~FN~~pkkGi~~L~~~g~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~ 662 (1739)
+.+++.+.+-.|-.+||.+|+|||+||+++.++..+|++||+||+.-+||+|++||+|||++++||++||++|+++..|.
T Consensus 57 kt~q~~k~~~~GRKKFNmDP~Kgiq~l~e~~ll~~dpq~iA~flykGEGLnKtaIG~yLGer~~~nl~vL~aFv~~Hef~ 136 (395)
T KOG0930|consen 57 KTKQRNKQVAMGRKKFNMDPKKGIQFLIENDLLQNDPEDIARFLYKGEGLNKTAIGDYLGERDEFNLQVLHAFVDLHEFT 136 (395)
T ss_pred hhHHHhHHHhhchhhcCCChHHHhHHHHHcccccCCHHHHHHHHHhcCCcchhhHhhhhccCchhHHHHHHHHHHHHHhc
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHhh
Q 000274 663 GMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRM 742 (1739)
Q Consensus 663 ~~~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~rY~~~Np~~f~sad~~yvLaysiimLnTdlHn~~vk~kMt~~~Fi~~ 742 (1739)
++++++|||+||=+||||||+|||||+||+||+|||.|||++|.|+|++|+|+||||||||.+|||+||.|-+++-||.|
T Consensus 137 dlnlVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYclcNPgvfqstDtcyvlsfs~IMlNTsLHNpNVrDkP~lErfi~M 216 (395)
T KOG0930|consen 137 DLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTLERFIAM 216 (395)
T ss_pred cchHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcccccCceeeeeeehhhhhcccccCCCCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCccccHHHHHHHHHHhhcccccccchhh
Q 000274 743 NAVNDAEECASTELLEEIYDSIVKEEIKMKDDVA 776 (1739)
Q Consensus 743 n~~~d~~~~lp~e~L~~iY~~I~~~ei~l~~e~~ 776 (1739)
|+|++.|.|+|+|.|..+|++|+.++++++++.+
T Consensus 217 Nrgineggdlpee~LrnlyeSi~~epFkIPeddg 250 (395)
T KOG0930|consen 217 NRGINEGGDLPEELLRNLYESIKNEPFKIPEDDG 250 (395)
T ss_pred hhccccCCCCcHHHHHHHHHHhcCCCCCCCcccC
Confidence 9999999999999999999999999999999873
No 7
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=100.00 E-value=1.5e-47 Score=420.99 Aligned_cols=183 Identities=49% Similarity=0.859 Sum_probs=179.6
Q ss_pred hhHHHHHHHHHHhcChhhhHHHHHHCCCC-CCChHHHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCCCCC
Q 000274 587 HKSTMEAAISEFNRKPVKGVEYLISNKLV-DNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGMK 665 (1739)
Q Consensus 587 ~K~~l~~~i~~FN~~pkkGi~~L~~~g~i-~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~~~ 665 (1739)
+|..+++|+.+||++|++||+||++.+++ .++|++||+||+.+++|||.+||+|||++++++.+||++|++.|||+|++
T Consensus 1 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~~vL~~y~~~f~f~~~~ 80 (185)
T cd00171 1 RKTLLSEGRQLFNRKPKKGISFLIEKGFLEDDSPKEIAKFLYETEGLNKKAIGEYLGENNEFNSLVLHEFVDLFDFSGLR 80 (185)
T ss_pred CcHHHHHHHHHHccCHHHHHHHHHHCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCCCC
Confidence 47889999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHhhhc
Q 000274 666 FDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFK-NADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMNA 744 (1739)
Q Consensus 666 i~~ALR~fL~~frLPgEaQ~IdRime~Fa~rY~~~Np~~f~-sad~~yvLaysiimLnTdlHn~~vk~kMt~~~Fi~~n~ 744 (1739)
|++|||.||.+|+||||+|+|||||+.||+|||+|||+.+. |+|++|+|+||+||||||+|||++++|||+++|++|++
T Consensus 81 i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~ 160 (185)
T cd00171 81 LDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLR 160 (185)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred cCCCCccccHHHHHHHHHHhhcccc
Q 000274 745 VNDAEECASTELLEEIYDSIVKEEI 769 (1739)
Q Consensus 745 ~~d~~~~lp~e~L~~iY~~I~~~ei 769 (1739)
++++++++|+++|++||++|+.+||
T Consensus 161 ~~~~~~~~~~~~L~~iY~~I~~~~~ 185 (185)
T cd00171 161 GINDGEDFPREFLKELYDSIKNNEI 185 (185)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999986
No 8
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=100.00 E-value=3.5e-47 Score=420.81 Aligned_cols=185 Identities=48% Similarity=0.815 Sum_probs=170.1
Q ss_pred HhhhHHHHHHHHHHhcChhhhHHHHHHCCCC--CCChHHHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCC
Q 000274 585 KAHKSTMEAAISEFNRKPVKGVEYLISNKLV--DNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFS 662 (1739)
Q Consensus 585 k~~K~~l~~~i~~FN~~pkkGi~~L~~~g~i--~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~ 662 (1739)
|++|..+++|+.+||.+|++||+||++.|++ +++|.+||+||+.+++|||.+||+|||+++++|..||++|++.|||+
T Consensus 2 k~~k~~l~~~~~~FN~~p~~gi~~l~~~~~~~~~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~~vL~~y~~~fdf~ 81 (190)
T PF01369_consen 2 KKRKRQLEEGVELFNKNPKKGIEYLIQNGFLENEDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNRDVLKEYISLFDFS 81 (190)
T ss_dssp GHHHHHHHHHHHHHHHSHHHHHHHHHHTTSSTS-SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHHHHHHHHHHTSS-T
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHHHHHHHHcCCc
Confidence 7899999999999999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCC--CCCChhHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHH
Q 000274 663 GMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPG--LFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFV 740 (1739)
Q Consensus 663 ~~~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~rY~~~Np~--~f~sad~~yvLaysiimLnTdlHn~~vk~kMt~~~Fi 740 (1739)
|++|++|||.||.+|+||||+|+|||||+.||++|++|||+ .|.++|++|+|+||+||||||+|||++++|||+++|+
T Consensus 82 ~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnTdlHn~~~~~kmt~~~Fi 161 (190)
T PF01369_consen 82 GMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNTDLHNPNIKKKMTKEDFI 161 (190)
T ss_dssp TS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHHHHH-TTSSSS--HHHHH
T ss_pred CccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhHHHHhhccccCCcHHHHH
Confidence 99999999999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred hhhccCCCCccccHHHHHHHHHHhhcccc
Q 000274 741 RMNAVNDAEECASTELLEEIYDSIVKEEI 769 (1739)
Q Consensus 741 ~~n~~~d~~~~lp~e~L~~iY~~I~~~ei 769 (1739)
+|+++++++.++|+++|.+||++|+++||
T Consensus 162 ~~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 190 (190)
T PF01369_consen 162 KNTRGIDDGKDIPEEFLESIYDSIKANPF 190 (190)
T ss_dssp HHTTTTBTTBS--HHHHHHHHHHHHHS--
T ss_pred HHhhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986
No 9
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=100.00 E-value=8.4e-47 Score=416.30 Aligned_cols=183 Identities=50% Similarity=0.826 Sum_probs=179.7
Q ss_pred hhHHHHHHHHHHhcChhhhHHHHHHCCCCC-CChHHHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCCCCC
Q 000274 587 HKSTMEAAISEFNRKPVKGVEYLISNKLVD-NDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGMK 665 (1739)
Q Consensus 587 ~K~~l~~~i~~FN~~pkkGi~~L~~~g~i~-~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~~~ 665 (1739)
+|..+.+|+.+||++|++||+||++.|++. ++|++||+||+++++|||.+||+|||++++++..||++|++.|+|+|++
T Consensus 2 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~~ 81 (187)
T smart00222 2 RKKLLSEGSVKFNDKPKKGIDSLQEKGFLAKDDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAKD 81 (187)
T ss_pred chHHHHHHHHHHccCHHHHHHHHHHcCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCCc
Confidence 578899999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCC--ChhHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHhhh
Q 000274 666 FDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFK--NADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMN 743 (1739)
Q Consensus 666 i~~ALR~fL~~frLPgEaQ~IdRime~Fa~rY~~~Np~~f~--sad~~yvLaysiimLnTdlHn~~vk~kMt~~~Fi~~n 743 (1739)
||+|||.||..|+||||+|+|||||++||+|||+|||+.+. |+|++|+|+||+||||||+|||++|+|||+++|++|+
T Consensus 82 i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn~~~k~kmt~~~Fi~~~ 161 (187)
T smart00222 82 LDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLNTDLHNPNVKKKMTLEDFIKNV 161 (187)
T ss_pred HHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred ccCCCCccccHHHHHHHHHHhhcccc
Q 000274 744 AVNDAEECASTELLEEIYDSIVKEEI 769 (1739)
Q Consensus 744 ~~~d~~~~lp~e~L~~iY~~I~~~ei 769 (1739)
++++++.++|+++|++||++|+.+||
T Consensus 162 ~~~~~~~~~~~~~L~~iY~~I~~~~i 187 (187)
T smart00222 162 RGSNDGEDLPREFLEELYDSIKNNEI 187 (187)
T ss_pred hccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999986
No 10
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-43 Score=420.75 Aligned_cols=877 Identities=17% Similarity=0.241 Sum_probs=600.4
Q ss_pred HHHHHHHHHHHHHHHHh-----CCC----------CCCChhHHHHHHHHHHHhhc--CCCCCC----CC----CCCCHHH
Q 000274 684 QKIDRIMEKFAERYCAD-----NPG----------LFKNADTAYVLAYSVILLNT--DAHNPM----VW----PKMTKSD 738 (1739)
Q Consensus 684 Q~IdRime~Fa~rY~~~-----Np~----------~f~sad~~yvLaysiimLnT--dlHn~~----vk----~kMt~~~ 738 (1739)
-..|.++..||-++|+. .|+ ...|||.-|.-|-.-.++|. -.|-.- -| .+=|..+
T Consensus 404 cedDTalnnFalkccegvsdicspdeDgensfdfqmlmnAdedpmAAhcakLenkfklahgatrrssekdeslapgtaKd 483 (1777)
T KOG1846|consen 404 CEDDTALNNFALKCCEGVSDICSPDEDGENSFDFQMLMNADEDPMAAHCAKLENKFKLAHGATRRSSEKDESLAPGTAKD 483 (1777)
T ss_pred hhhHHHHHHHHHHHhcCcccccCCCCCccchhhHHHhcCCCcchHHHHHHHHHHHhccCcccccchhccCcccCcchHHH
Confidence 34677788888888864 332 23588888888877777772 222211 01 1456789
Q ss_pred HHhhhccCCCCccccHHHHHHHHHHhhcccccccchh----hhhhcccccccccccchhhhccccccccCccchhhhhHH
Q 000274 739 FVRMNAVNDAEECASTELLEEIYDSIVKEEIKMKDDV----AKSSRQKQEGEERGGLVGILNLALPKQKSSTDTKSESEA 814 (1739)
Q Consensus 739 Fi~~n~~~d~~~~lp~e~L~~iY~~I~~~ei~l~~e~----~~~~~q~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~ 814 (1739)
|++.-....-.--+.....++||+.|.....-..+.. ++.+++... -+..++|....- . .+|. ..-.
T Consensus 484 FmkalqeSgldiiaapanieeideaiLdfnmlfeagfcgshaDaskplik-----ilqdflntdagl--e-saaa-ggcl 554 (1777)
T KOG1846|consen 484 FMKALQESGLDIIAAPANIEEIDEAILDFNMLFEAGFCGSHADASKPLIK-----ILQDFLNTDAGL--E-SAAA-GGCL 554 (1777)
T ss_pred HHHHHHhcCceeeeccccHHHHHHHHHhhhhccccccccCchhccccHHH-----HHHHhhhhhHHH--H-HHhh-ccee
Confidence 9985332211122455678889999887543322211 111110000 000111100000 0 0000 0000
Q ss_pred HHH-HHHHHH---HhcCCcc----ceEEecccccchHHHHHHhhhHHHHHHHhhhh-------------------cCCCh
Q 000274 815 IVK-QTQAIF---RNQGVKR----GVFYTSNRIELVRPMVEAVGWPLLAAFSVTME-------------------EGENK 867 (1739)
Q Consensus 815 ~~~-~~~~l~---k~~~~~~----~~f~~a~~~~~v~~Mf~~~w~p~LaalS~~l~-------------------~~~d~ 867 (1739)
|+. .|+.++ |+...+. -.|-.-.-+-.++.|.++...|++-++-.+.. +...+
T Consensus 555 iahaaTeslealkkriddSgcVagVAfarldkVfcnkkliDalsspilpglmagindfdafakGlladgeKekniKeRqd 634 (1777)
T KOG1846|consen 555 IAHAATESLEALKKRIDDSGCVAGVAFARLDKVFCNKKLIDALSSPILPGLMAGINDFDAFAKGLLADGEKEKNIKERQD 634 (1777)
T ss_pred eccccccCHHHHhhhcccccceeehhhhHHHHhhhhhhhhhhhccccchhhhhcccchHHHHhhhhhhhHHHhhhhhhhc
Confidence 000 011111 1111111 01111112235678888888776433222211 11112
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhhhccCC---------c-----------------------cchhhh
Q 000274 868 PRVALCMEGFKAGIHITQVLGMDTMRYAFLTSLVRFTFLHA---------P-----------------------KEMRSK 915 (1739)
Q Consensus 868 ~~i~~cLeGf~~ai~ia~~~~l~~~Rdafi~sL~kft~L~~---------~-----------------------~em~~K 915 (1739)
+....-++|++.+.+++|..|.....+..++-|+-...... | -....-
T Consensus 635 daeCmeedglakaarlscaagvaaicasalaflAaaecrkeeeeeREAiepSdagmqnkcaVaQkLelegkcggifehla 714 (1777)
T KOG1846|consen 635 DAECMEEDGLAKAARLSCAAGVAAICASALAFLAAAECRKEEEEEREAIEPSDAGMQNKCAVAQKLELEGKCGGIFEHLA 714 (1777)
T ss_pred chhhhchhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcChHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 34556679999999999999987777666555554332211 0 012344
Q ss_pred hHHHHHHHHhhhccCCChhhhhHHHHHHHHHHhHHhhcC--------CCcc---------c--ccccC------CC-c--
Q 000274 916 NVEALRTLLALCDTEPDSLQDTWNAVLECVSRLEFIMST--------PAIS---------A--TVMLG------SN-Q-- 967 (1739)
Q Consensus 916 Nv~alkaLL~lA~~~Gn~L~~SW~~IL~~is~Le~l~~~--------P~~~---------~--~~~~~------s~-~-- 967 (1739)
++.|..+.|......|.+-.+.|+++.+....+-.++.. |..+ . ...-| ++ .
T Consensus 715 etlCceadLrddaeaGshnddcqkhtcrscEhlgalehnhdeagaaihalscskcseqkaegeagilGdaeCeekPpehk 794 (1777)
T KOG1846|consen 715 ETLCCEADLRDDAEAGSHNDDCQKHTCRSCEHLGALEHNHDEAGAAIHALSCSKCSEQKAEGEAGILGDAECEEKPPEHK 794 (1777)
T ss_pred HHHHHHHHhhchhhhcCCCCccccccchHHHHHHHHHhhcccccccCCccchhccchhhhhccccccCChhhcCCCcccC
Confidence 667888889999999999999999998876554333211 1100 0 00000 00 0
Q ss_pred ---------------------cchhH------------HHH--HH---HHhhcCchhhhhhcC-CCCChhHHHHHHHHHH
Q 000274 968 ---------------------ISKDA------------VVQ--SL---KELAGKPAEQVFVNS-VKLPSDSIVEFFNALC 1008 (1739)
Q Consensus 968 ---------------------~s~~~------------~~~--sl---~e~~~~~id~IF~~S-~~Ls~eAiv~Fv~ALc 1008 (1739)
.+++. +++ +. ...+...+||+|+.. ..|...|+.+|.-++.
T Consensus 795 ferqgredkeadkeeklsaaDlsiEgalGdapdfrggslmSghSaakaictLiakaDRffedacdeLcLmALgdfcvaii 874 (1777)
T KOG1846|consen 795 FERQGREDKEADKEEKLSAADLSIEGALGDAPDFRGGSLMSGHSAAKAICTLIAKADRFFEDACDELCLMALGDFCVAII 874 (1777)
T ss_pred hhhcCcccccccccccccHHhhhhccccCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHH
Confidence 00000 000 00 012234579999864 7899999999999999
Q ss_pred hhcHHhhhcC----------CC--------c--cchHHHHHHHHH---hcccccccchHHHHHHHHHHHHHh-cCCCCHH
Q 000274 1009 GVSAEELRQT----------PA--------R--VFSLQKLVEISY---YNMARIRMVWARIWSVLANHFISA-GSHHDEK 1064 (1739)
Q Consensus 1009 ~vS~eEl~~s----------~p--------r--~FsLqKLvEVa~---~Nm~Rirl~W~~IW~vl~~hf~~v-g~~~n~~ 1064 (1739)
+.|...+..+ -| | ...|.||.+... ....|..++-+.+|..++.||+++ +||....
T Consensus 875 kaSenqlFhsvTaqkdihLaaPgevkstqdrksalhLfRigdaiirilrhkaRPLlHqMfcwpLVaaHfVeasaCdkErh 954 (1777)
T KOG1846|consen 875 KASENQLFHSVTAQKDIHLAAPGEVKSTQDRKSALHLFRIGDAIIRILRHKARPLLHQMFCWPLVAAHFVEASACDKERH 954 (1777)
T ss_pred HhhhcceeeeeccceeeEeecCcccccchhhHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhHHHHhHHhhhhhhH
Confidence 9998877642 12 2 367888888332 233489999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHh-hhhhhcchhhHHhhhhhHHHHHhc-CchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHH
Q 000274 1065 IAMYAIDSLRQLSMKYL-ERAELTNFTFQNDILKPFVVLIRN-SRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFT 1142 (1739)
Q Consensus 1065 va~~AiDsLrQLs~kfL-e~eEL~~f~fQ~~fLkPFe~im~~-s~~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~ 1142 (1739)
|+..|+..+..+..+.| .+.|-++|+|.+.++.||+.+|+. +|+.|+++++|..|.++|+.+++.|.||||++|+.|.
T Consensus 955 vSqiAaSaiadilTelLtdwnEpPgfhFNeaLfgPFeramclElCdEdtkdQflsSigeLVescadkIgSGWkPLFgaLe 1034 (1777)
T KOG1846|consen 955 VSQIAASAIADILTELLTDWNEPPGFHFNEALFGPFERAMCLELCDEDTKDQFLSSIGELVESCADKIGSGWKPLFGALE 1034 (1777)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcchhHhhhchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Confidence 99999999999999888 678999999999999999999975 7999999999999999999999999999999999999
Q ss_pred Hhhcchh----HHHH---------HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccC-----------------c
Q 000274 1143 AAADDEV----ESIV---------ESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKT-----------------S 1192 (1739)
Q Consensus 1143 ~aa~d~~----e~iV---------~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~-----------------d 1192 (1739)
+...... +.++ .-+|++++..++.....+..++...||.||.+|.++.. .
T Consensus 1035 aVgggnksemkaaldedysmgKghacafDVfeafLniDnipVfanaalecimClmkflkgleevDckeigdcapapgaps 1114 (1777)
T KOG1846|consen 1035 AVGGGNKSEMKAALDEDYSMGKGHACAFDVFEAFLNIDNIPVFANAALECIMCLMKFLKGLEEVDCKEIGDCAPAPGAPS 1114 (1777)
T ss_pred HhcCCcHHHHHHHHhcccccccccchhhHHHHHHhccCchHhHHHHHHHHHHHHHHHHhcccccccchhcccCCCCCCCc
Confidence 8864321 2222 35788888777766667778999999999999999865 2
Q ss_pred ccchHHHHHhHHHHHHHhhcccC-CCC-----------CCC----------CCCcc--------ccCccchhhhchHHHH
Q 000274 1193 HRISLKAIALLRICEDRLAEGLI-PGG-----------DLK----------PIDVE--------TDATFDVTEHFWFPML 1242 (1739)
Q Consensus 1193 ~nISL~AI~lLw~~~d~L~~~~~-~~~-----------~~~----------~~~~~--------~~~~~~~~~~lW~pLL 1242 (1739)
.+++|.|+++|.+|+..++..+. |-. +.+ ++++. +..+...-..+|+.+|
T Consensus 1115 tdKOGaALdlLpncsqLiakiYkmPhkPifhlghladLprkcldqsamdeDgIEsphgpfpvledfdddiagiElfiifl 1194 (1777)
T KOG1846|consen 1115 TDLCLAALDLLPNCSQLIAKIYKMPHKPIFHLGHLADLPRKCLDQSAMDEDGIESPHGPFPVLEDFDDDIAGIELFIIFL 1194 (1777)
T ss_pred chhhHHHHHHHHhHHHHHHHHHcCCCchhhhhhhhhcchHHHHhhhhcccCCccCCCCCccccccccccchhHHHHHHHH
Confidence 46889999999999988875421 110 000 01110 0011123457999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhccCC-CCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhH--HHHHHHHH
Q 000274 1243 AGLSDLTSDPRPEVRSCALEVLFDLLNERGSK-FSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWF--RETSIHSL 1319 (1739)
Q Consensus 1243 ~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G~~-f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl--~eT~~~aL 1319 (1739)
..+.....++.|.-++.-|..+|++|..-... +++.|.-.+...+|+|.++.|..+.+ .++..|. .....||+
T Consensus 1195 EQicaallncppnhQknlLDlifeLLrDiskkPlGadfGgvamsaliLPvmqkWiRRld----kdesywdmakaifKhaI 1270 (1777)
T KOG1846|consen 1195 EQICAALLNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVAMSALILPVMQKWIRRLD----KDESYWDMAKAIFKHAI 1270 (1777)
T ss_pred HHHHHHHhcCCcccCccHHHHHHHHHHHhccCCCCCCCccchhhHHHHHHHHHHHHHhc----hhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999987654 48888889999999999999976543 2456783 23566777
Q ss_pred HHHHHHHHHH-------------HHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 000274 1320 QLLCNLFNTF-------------YKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTLLKSI 1386 (1739)
Q Consensus 1320 ~~lv~LF~~y-------------f~~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~~~~~f~~~~W~~i~~~~ 1386 (1739)
..-+.+...+ ...++.|+.+.+.++..|...+.+.+.++|++|++..+...|++|++++|+..|+++
T Consensus 1271 GaccelVidhielekhSswddRlerdIcalikdcfefdkaCaaaPaefiliagcsciryvlvtagpkFseemWniaccaL 1350 (1777)
T KOG1846|consen 1271 GACCELVIDHIELEKHSSWDDRLERDICALIKDCFEFDKACAAAPAEFILIAGCSCIRYVLVTAGPKFSEEMWNIACCAL 1350 (1777)
T ss_pred hHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHhhcchheeeeeccCccccHHHHHHHHHHH
Confidence 7666665543 335556788889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC-chhhhhhcccccchhcccccccCCCCCCCCCccCCCCCcccCCCCCCCCCCCCCCCCCCCCcCcccccccc
Q 000274 1387 RDASYTTQ-PLELLNENLKNVTVVIRDSEVGAGEADNNQFGVSDNGKVSTLSSPTIGADGTPRNLNTPFSLDHNQEAGLH 1465 (1739)
Q Consensus 1387 ~~~~~~T~-p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1465 (1739)
.++|..|+ |+.++ ..+++.+ +.+++++ ||..
T Consensus 1351 adAfsasLkhVkdL-----lgcFhrg------------sedenGd-----------gcqi-------------------- 1382 (1777)
T KOG1846|consen 1351 ADAFSASLKHVKDL-----LGCFHRG------------SEDENGD-----------GCQI-------------------- 1382 (1777)
T ss_pred HHHHHhhhHHHHHH-----HhHhhcC------------CcccCCC-----------ccee--------------------
Confidence 99999998 77755 2344321 1112111 2332
Q ss_pred CCCCCCCCCCCCccchhhhhhhhccccchhhccccccccccccccccCCCCCCCCCCCCC----CCCCCCCCCCCccccc
Q 000274 1466 LDGSEGVPSPSGRAQKTTEAFQRNQSIGQKIMGNMMDNRFLRSFTSKSKSQVPDASIPSS----SPKLPDAVEPDAKDEE 1541 (1739)
Q Consensus 1466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 1541 (1739)
..+.|+.+|.+ -+++|+ |.+|.+.+|+.+++|.+ ++|+++.+++ +++++.+++|+++++
T Consensus 1383 ---gdaapSsnPga---eaerql--------IaAmaqlsfmkdkqcgp--kkpeeeDhaqgcaLIielhgadkpnghtk- 1445 (1777)
T KOG1846|consen 1383 ---GDAAPSSNPGA---EAERQL--------IAAMAQLSFMKDKQCGP--KKPEEEDHAQGCALIIELHGADKPNGHTK- 1445 (1777)
T ss_pred ---ccccCCCCchH---HHHHHH--------HHHHHHHHHHHhhccCC--CCCcchhhhhcceeeEecCCccCCCCccc-
Confidence 11234443432 244565 67789999999999987 4777777766 678888999999998
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH-----------------------HHHHccCChhHHHHHHHHHHHHHHHHhhccC
Q 000274 1542 ESPIWATIRGKCITQLLLLSAIDSIQ-----------------------RKYWGKLKAPQKIAIMDILLSLLEFSASYNS 1598 (1739)
Q Consensus 1542 ~~~~~~~i~~kcvlQLLli~~~~el~-----------------------~~~~~~ip~~~~~~l~~~L~~s~~fA~~fN~ 1598 (1739)
++-.|..|++.-...-||+|.+.+|+ .+|.++|..+.+.+|+++|.+||+.|++|++
T Consensus 1446 hrlefheIisSLfsHclLLQliadiLLeEdskgPklgaekigqtpeadlagflryiddqilaiifdiLldSseTaldFDs 1525 (1777)
T KOG1846|consen 1446 HRLEFHEIISSLFSHCLLLQLIADILLEEDSKGPKLGAEKIGQTPEADLAGFLRYIDDQILAIIFDILLDSSETALDFDS 1525 (1777)
T ss_pred ceeeHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccccCCCcchhhHHHhcchhHHHHHHHHHhhhhhhhhccCC
Confidence 66779999998884445589999988 2799999999999999999999999999999
Q ss_pred CHHHHHHhhhCCCCCCCCcchhhhhhhHHHHHHHHHHHhc
Q 000274 1599 YSNLRMRMHHIPAERPPLNLLRQELAGTSIYLDILQKTTS 1638 (1739)
Q Consensus 1599 d~~LR~rL~~~~~~~~~pnLLkqE~~s~~~yl~il~~~~~ 1638 (1739)
.+.|..-|.|...+....|||||...++.+|.+.|-....
T Consensus 1526 rPalgcLLkkmlGiggaANLlkasalsfnilfhalscavL 1565 (1777)
T KOG1846|consen 1526 RPALGCLLKKMLGIGGAANLLKASALSFNILFHALSCAVL 1565 (1777)
T ss_pred CccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999977778889999999999999888875433
No 11
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-45 Score=416.85 Aligned_cols=190 Identities=42% Similarity=0.703 Sum_probs=185.6
Q ss_pred hhhHHHHHHHHHHhcChhhhHHHHHHCCCCCCChHHHHHHHHhcCCCChHHHHhhhcCC-CChHHHHHHHHHHcCCCCCC
Q 000274 586 AHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQH-EEFPVAVMHAYVDSMKFSGM 664 (1739)
Q Consensus 586 ~~K~~l~~~i~~FN~~pkkGi~~L~~~g~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~-~~~~~~vl~~yv~~~dF~~~ 664 (1739)
.+|+.+..|..+||+||.|||+||++.||++++|..+|+||+...||+|.|||||||.. ++||..||+.+||.|||++|
T Consensus 196 ~~kr~YriGlnlfn~kPekGvQ~Li~rGFv~dtPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdVLdcvvdemDfssm 275 (627)
T KOG0931|consen 196 RRKRHYRIGLNLFNKKPEKGVQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSM 275 (627)
T ss_pred HHHHHhhhccchhcCCcchhhhhhhhhcccCCCchHHHHHHHhhccchHHHHHHHhccccchhhhHHHHHHHhhhccccc
Confidence 47889999999999999999999999999999999999999999999999999999986 68999999999999999999
Q ss_pred ChHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCC---CCCChhHHHHHHHHHHHhhcCCCCCCCC--CCCCHHHH
Q 000274 665 KFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPG---LFKNADTAYVLAYSVILLNTDAHNPMVW--PKMTKSDF 739 (1739)
Q Consensus 665 ~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~rY~~~Np~---~f~sad~~yvLaysiimLnTdlHn~~vk--~kMt~~~F 739 (1739)
.+|+|||.|...||+|||||||||++|+|+.|||.|||. -|.|.|++|+|||+|||||||+|+|+|| +||+++||
T Consensus 276 elDeALRKfqahirvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTDmySPnVKperkM~leDF 355 (627)
T KOG0931|consen 276 ELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLEDF 355 (627)
T ss_pred hHHHHHHHHHHHeecccHHHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhcccccCCCCCHHHhhhHHHH
Confidence 999999999999999999999999999999999999998 4899999999999999999999999999 79999999
Q ss_pred HhhhccCCCCccccHHHHHHHHHHhhcccccccchh
Q 000274 740 VRMNAVNDAEECASTELLEEIYDSIVKEEIKMKDDV 775 (1739)
Q Consensus 740 i~~n~~~d~~~~lp~e~L~~iY~~I~~~ei~l~~e~ 775 (1739)
|+|-||.|+|.|+|++.|..||++|++.|++-.+++
T Consensus 356 ikNLRGvDnGeDIpRell~GIYeRIqk~ELktndDH 391 (627)
T KOG0931|consen 356 IKNLRGVDNGEDIPRELLVGIYERIQKRELKTNDDH 391 (627)
T ss_pred HHhccCCCCcccCcHHHHHHHHHHHHHhhcccCcch
Confidence 999999999999999999999999999999999988
No 12
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=99.97 E-value=8.2e-32 Score=293.40 Aligned_cols=155 Identities=41% Similarity=0.654 Sum_probs=145.4
Q ss_pred ChhhhHHHHHHHHHHhccCCCCCch-------hhhhhhHHHHHHHHHHHhcCCcccc---cChhhHHHHHHHHHHHHHHh
Q 000274 340 SIGQQDALLVFRTLCKMGMKEDSDE-------VTTKTRILSLELLQGLLEGVSHSFT---KNFHFIDSIKAYLSYALLRA 409 (1739)
Q Consensus 340 ~~~~kDAflvFr~LCkLs~k~~~~~-------~~~rsk~lsLeLl~~iL~~~~~~f~---~~~~f~~~ik~~Lc~~Llrn 409 (1739)
+.+++||++|||+||+|++|+.+.+ +..++|++|||||+++|+++|+.|. +|+.|++++|++||++|++|
T Consensus 2 ~~~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~ 81 (168)
T PF12783_consen 2 NYYVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKN 81 (168)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999997766542 4779999999999999999999999 55699999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHHHhcChhHHHHHHHhcCCC
Q 000274 410 SVSQSSVIFQYATGIFSVLLLRFRESLKGEIGVFFPLIVLRSLDGSD--NNQKTSVLRMIDKVCKDPQMLVDVYVNYDCD 487 (1739)
Q Consensus 410 ~~S~~~~vF~lsl~If~~Ll~~~r~~Lk~Eievfl~~i~l~~Le~s~--~~qK~~~Le~l~~l~~dp~~lvdiyvNYDCd 487 (1739)
+.++.+++|..++|||++|+.+||.+||.|+|+||+.|+++++++++ +|||+++||+++++|++|++++|+|+|||||
T Consensus 82 ~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NYDCd 161 (168)
T PF12783_consen 82 LSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVNYDCD 161 (168)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHHcCCC
Confidence 99988999999999999999999999999999999999999998754 8999999999999999999999999999999
Q ss_pred CCCccHH
Q 000274 488 LEAPNLF 494 (1739)
Q Consensus 488 ~~~~nIf 494 (1739)
.+++|||
T Consensus 162 ~~~~nif 168 (168)
T PF12783_consen 162 LNSKNIF 168 (168)
T ss_pred CCCCCCC
Confidence 9999987
No 13
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.9e-26 Score=268.56 Aligned_cols=156 Identities=33% Similarity=0.519 Sum_probs=149.9
Q ss_pred hHHHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCCCCChHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH
Q 000274 619 PTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYC 698 (1739)
Q Consensus 619 p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~~~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~rY~ 698 (1739)
...+|+-|+..++.-|..+..+||++++|+.-|..+|+..|+|.||++|.|||.||+.|-|-||.|.-+|++-.|+.|||
T Consensus 307 A~rlArrLY~L~gf~~sdVA~~LgknNeFS~lVa~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRERvL~hFS~Ry~ 386 (774)
T KOG0932|consen 307 AARLARRLYRLEGFRKSDVARHLGKNNEFSRLVAEEYLSFFQFSGMTLDQALREFLKALELMGETQERERVLRHFSRRYF 386 (774)
T ss_pred HHHHHHHHHHhhCccHHHHHHHhcccchHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCChhHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHhhhccCCCCccccHHHHHHHHHHhhcccccccch
Q 000274 699 ADNPGLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMNAVNDAEECASTELLEEIYDSIVKEEIKMKDD 774 (1739)
Q Consensus 699 ~~Np~~f~sad~~yvLaysiimLnTdlHn~~vk~kMt~~~Fi~~n~~~d~~~~lp~e~L~~iY~~I~~~ei~l~~e 774 (1739)
+|||++|.+.|.++.|.++|++||||||.++|.+|||.++||.|-.|.++|.|||.|+|..+|++|+++.+.+.-+
T Consensus 387 ~CNP~~~~S~DgvHtLTCAlmLLNTDLHGhniGKkMtcqdFI~Nl~glndG~dF~kelLKaLy~SIKneklewAid 462 (774)
T KOG0932|consen 387 QCNPDIFDSEDGVHTLTCALMLLNTDLHGHNIGKKMTCQDFITNLAGLNDGGDFPKELLKALYNSIKNEKLEWAID 462 (774)
T ss_pred ccCccccccccchhHHHHHHHHHccccccccccccccHHHHHHHHhcccccCccHHHHHHHHHHHHhhhhhhhccC
Confidence 9999999999999999999999999999999999999999999988999999999999999999999997766543
No 14
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=99.84 E-value=9.4e-22 Score=190.46 Aligned_cols=86 Identities=48% Similarity=0.843 Sum_probs=83.7
Q ss_pred HHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHH
Q 000274 1078 MKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAF 1157 (1739)
Q Consensus 1078 ~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~aF 1157 (1739)
|||++++||+||+||++||+||+.+|.++++.+||++||+||.+||+++|++|+|||++||++|+.++.+.++++|..||
T Consensus 1 ~kfl~~~El~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af 80 (86)
T PF09324_consen 1 MKFLEKEELSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAF 80 (86)
T ss_pred CCccccccccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000274 1158 ENVEQV 1163 (1739)
Q Consensus 1158 ~~l~~I 1163 (1739)
+++++|
T Consensus 81 ~~~~~I 86 (86)
T PF09324_consen 81 QIVQLI 86 (86)
T ss_pred HHHhhC
Confidence 999865
No 15
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.51 E-value=0.02 Score=81.85 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=35.2
Q ss_pred hhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCccc-CcHHHHH
Q 000274 1095 ILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKS-GWRSVFM 1139 (1739)
Q Consensus 1095 fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkS-GWk~IF~ 1139 (1739)
+|.-|..+.. .+..|||...|++|.+++..+|+.+.. .|..||.
T Consensus 1348 LL~~Ls~l~~-D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~ 1392 (1780)
T PLN03076 1348 LLAGLSELSF-DPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFE 1392 (1780)
T ss_pred HHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 3444444433 467899999999999999999999986 7888887
No 16
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=9.9 Score=52.24 Aligned_cols=140 Identities=20% Similarity=0.310 Sum_probs=99.4
Q ss_pred chHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHH
Q 000274 1237 FWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSI 1316 (1739)
Q Consensus 1237 lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~ 1316 (1739)
-|--||.-|-...+++.+..|..|+-+|+.+....|..+.+. -..+.|+|..-.... +.. +.-+..
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~------~~~l~~lf~q~~~d~------s~~--vr~~a~ 180 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH------LDDLLRLFSQTMTDP------SSP--VRVAAV 180 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh------HHHHHHHHHHhccCC------cch--HHHHHH
Confidence 598999999999999999999999999999999999999872 234557777543211 122 345555
Q ss_pred HHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHHHh
Q 000274 1317 HSLQLLCNLF---NTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRDASY 1391 (1739)
Q Consensus 1317 ~aL~~lv~LF---~~yf~~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~~~~~f~~~~W~~i~~~~~~~~~ 1391 (1739)
+|+..++... +.-.+.+..++|.++..+..+|+..++.-|.-...+|-.|+... +||-..+...|+..--.++.
T Consensus 181 rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~-pk~l~~~l~~ii~~~l~Ia~ 257 (1075)
T KOG2171|consen 181 RALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE-PKLLRPHLSQIIQFSLEIAK 257 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHhh
Confidence 6655555444 33445566789999999999999999888877778877776654 44444555555554444443
No 17
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=6.3 Score=54.01 Aligned_cols=297 Identities=15% Similarity=0.178 Sum_probs=176.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhc
Q 000274 1047 WSVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSK 1126 (1739)
Q Consensus 1047 W~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~ 1126 (1739)
|.-+..++.+....+|+..|.-|+-.|..+..-|-+.. . .+-.+|+.=|..-|....+. ||-.-++.+..++.-.
T Consensus 116 WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~--~--~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~ 190 (1075)
T KOG2171|consen 116 WPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL--Q--PHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYL 190 (1075)
T ss_pred hHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc--c--hhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHh
Confidence 45677888888899999999999999988876664321 1 13357888888888776666 9999999999988776
Q ss_pred cC------CcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccC-cccchHHH
Q 000274 1127 VG------SIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKT-SHRISLKA 1199 (1739)
Q Consensus 1127 ~~------~IkSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~-d~nISL~A 1199 (1739)
.+ ..+.-=+.++.++...-.+.+......+|+++.-+.. -.+.+..+.|.++|..-...++|+. +..+--.|
T Consensus 191 ~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e-~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~A 269 (1075)
T KOG2171|consen 191 ENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE-SEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLA 269 (1075)
T ss_pred ccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 41 1222345677788877777777777888888754432 2234445677777776666666654 23344568
Q ss_pred HHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCC-----------CC-HHHHHHHHHHHHHH
Q 000274 1200 IALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSD-----------PR-PEVRSCALEVLFDL 1267 (1739)
Q Consensus 1200 I~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D-----------~R-~EVR~~ALqtLF~i 1267 (1739)
++++-.++.+-..+..... .....+-..+|..+.+...| +. ..--..|.+.+=+.
T Consensus 270 Le~ivs~~e~Ap~~~k~~~-------------~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrl 336 (1075)
T KOG2171|consen 270 LEFLVSLSEYAPAMCKKLA-------------LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRL 336 (1075)
T ss_pred HHHHHHHHHhhHHHhhhch-------------hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHH
Confidence 8887777666221100000 00112222333333332222 11 11222333333222
Q ss_pred HHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000274 1268 LNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDC 1347 (1739)
Q Consensus 1268 L~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~c 1347 (1739)
.-.++++ .|+.|+|..+...- ...+|- -+.-||-.++-+-.--.+.+...|+.++...+..
T Consensus 337 ----A~~L~g~-------~v~p~~~~~l~~~l------~S~~w~--~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~ 397 (1075)
T KOG2171|consen 337 ----ALHLGGK-------QVLPPLFEALEAML------QSTEWK--ERHAALLALSVIAEGCSDVMIGNLPKILPIVLNG 397 (1075)
T ss_pred ----HhcCChh-------hehHHHHHHHHHHh------cCCCHH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Confidence 2234331 34455555553221 234672 2233444444444445566667799999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHHcCCCCCHhhHHH
Q 000274 1348 AKKPDQSVVSISLGALVHLIEVGGHQFSESDWDT 1381 (1739)
Q Consensus 1348 I~q~ne~ia~ig~~cL~~Li~~~~~~f~~~~W~~ 1381 (1739)
++.++.-+-..+++|+-|+=..-.+-+...+=+.
T Consensus 398 l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~ 431 (1075)
T KOG2171|consen 398 LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHER 431 (1075)
T ss_pred cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHh
Confidence 9999999999999999886555444433333333
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.12 E-value=16 Score=47.27 Aligned_cols=127 Identities=11% Similarity=0.153 Sum_probs=90.2
Q ss_pred CccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhH
Q 000274 1020 ARVFSLQKLVEISYYNMARIRMVWARIWSVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPF 1099 (1739)
Q Consensus 1020 pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPF 1099 (1739)
..-+.+.||+-++...+. -.++...-.+.+++.+=-.|+|+.++-.|+..|-.+... | .-..++.+.
T Consensus 53 s~~~~~Krl~yl~l~~~~---~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~-----~-----~~~~l~~~v 119 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYL---HEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTP-----E-----MAEPLIPDV 119 (526)
T ss_dssp SSSHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH-----H-----HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc-----c-----hhhHHHHHH
Confidence 455777888777644333 234556667888888888899999998888888766522 2 224455555
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 000274 1100 VVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQV 1163 (1739)
Q Consensus 1100 e~im~~s~~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I 1163 (1739)
..++. ++++.||...+-|+.++.+...+.+..+| +..+.....|++..++..|...+..|
T Consensus 120 ~~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 120 IKLLS-DPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHhc-CCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHhhhccCCcchhHHHHHHHHHHH
Confidence 55554 56779999999999999999888776664 56666666777777888888877766
No 19
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.80 E-value=41 Score=44.08 Aligned_cols=321 Identities=19% Similarity=0.256 Sum_probs=161.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---HHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHH
Q 000274 1047 WSVLANHFISAGSHHDEKIAMYAIDSLRQLSM---KYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMI 1123 (1739)
Q Consensus 1047 W~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~---kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI 1123 (1739)
|.-+-+-+.++-..++...-.-|++.|.+++. .+++.+=+ -++-+-++--|...+ .++++.||...+.|++|+|
T Consensus 126 wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~--~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 126 WPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVL--TRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred chhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcc--cCchHHhHHHHHHHH-hCCChhHHHHHHhhhhhee
Confidence 33344444444334433333346777766643 34433221 112222222233333 3568999999999999998
Q ss_pred HhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhH
Q 000274 1124 KSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALL 1203 (1739)
Q Consensus 1124 ~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lL 1203 (1739)
-.+.+.+--.=.+-++.+-+-|.|+++.+-+.--..+-.+..-+.+.+.+ .....|.- .-...|..|.+++|.|-++.
T Consensus 203 ~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p-hl~~Ivey-ML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 203 IIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP-HLDNIVEY-MLQRTQDVDENVALEACEFW 280 (885)
T ss_pred ecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc-chHHHHHH-HHHHccCcchhHHHHHHHHH
Confidence 77776665555555566656667766544433333333333222222221 11111111 22345778899999999974
Q ss_pred HHHHH----------HhhcccCC----CCCCCC-------CCcccc--Cc--cchhhhchHHHHHHHhhh--cCCC--C-
Q 000274 1204 RICED----------RLAEGLIP----GGDLKP-------IDVETD--AT--FDVTEHFWFPMLAGLSDL--TSDP--R- 1253 (1739)
Q Consensus 1204 w~~~d----------~L~~~~~~----~~~~~~-------~~~~~~--~~--~~~~~~lW~pLL~~Ls~l--~~D~--R- 1253 (1739)
-.+++ ||.+- +| +-..+. ...++. ++ .|...++--.=..+..+. -.|. +
T Consensus 281 la~aeqpi~~~~L~p~l~kl-iPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe 359 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKL-IPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDE 359 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHH-HHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccc
Confidence 43321 11110 00 000000 000100 00 010000000000000000 0011 1
Q ss_pred ---------HHHHHH---HHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhH-HHHHHHHHH
Q 000274 1254 ---------PEVRSC---ALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWF-RETSIHSLQ 1320 (1739)
Q Consensus 1254 ---------~EVR~~---ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl-~eT~~~aL~ 1320 (1739)
=..|++ ||.+|-+++ + +.++ .++||++..... +..|. .|..++|+.
T Consensus 360 ~DDdD~~~dWNLRkCSAAaLDVLanvf-------~----~elL-~~l~PlLk~~L~---------~~~W~vrEagvLAlG 418 (885)
T KOG2023|consen 360 DDDDDAFSDWNLRKCSAAALDVLANVF-------G----DELL-PILLPLLKEHLS---------SEEWKVREAGVLALG 418 (885)
T ss_pred cccccccccccHhhccHHHHHHHHHhh-------H----HHHH-HHHHHHHHHHcC---------cchhhhhhhhHHHHH
Confidence 235664 344443321 1 2333 567888876653 34674 677888887
Q ss_pred HHHHHHHH----HHHHHHH-----------------------------------hHHHHHHHHHHhhcCCChhHHHHHHH
Q 000274 1321 LLCNLFNT----FYKEVCF-----------------------------------MLPPLLSLLLDCAKKPDQSVVSISLG 1361 (1739)
Q Consensus 1321 ~lv~LF~~----yf~~l~~-----------------------------------~L~~~l~lL~~cI~q~ne~ia~ig~~ 1361 (1739)
.+..-=.+ |+..|-+ .+..++.=|+.++...|..+-..||+
T Consensus 419 AIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcs 498 (885)
T KOG2023|consen 419 AIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACS 498 (885)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHH
Confidence 76543332 2222211 12223344556667788999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHHHHhhcCc
Q 000274 1362 ALVHLIEVGGHQFSESDWDTLLKSIRDASYTTQP 1395 (1739)
Q Consensus 1362 cL~~Li~~~~~~f~~~~W~~i~~~~~~~~~~T~p 1395 (1739)
++-.|.+..|+.+-+ ....|.+.|..+|..-.-
T Consensus 499 AfAtleE~A~~eLVp-~l~~IL~~l~~af~kYQ~ 531 (885)
T KOG2023|consen 499 AFATLEEEAGEELVP-YLEYILDQLVFAFGKYQK 531 (885)
T ss_pred HHHHHHHhccchhHH-HHHHHHHHHHHHHHHHhh
Confidence 999999999999877 888899988888876443
No 20
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.66 E-value=64 Score=41.80 Aligned_cols=297 Identities=14% Similarity=0.191 Sum_probs=170.3
Q ss_pred hHHHHHHHHHHhhcHHhhhcCCCccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000274 998 DSIVEFFNALCGVSAEELRQTPARVFSLQKLVEISYYNMARIRMVWARIWSVLANHFISAGSHHDEKIAMYAIDSLRQLS 1077 (1739)
Q Consensus 998 eAiv~Fv~ALc~vS~eEl~~s~pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~~hf~~vg~~~n~~va~~AiDsLrQLs 1077 (1739)
..+..+++.||.+- ..+.-|...+++.+... ..+....-..- ..+-+.+.....+.+..|++.|+..+-.+.
T Consensus 188 ~~~~~~~~~L~~~l------~~~~~~~q~~il~~l~~-~~~~~~~~~~~-~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 188 SLIPKLIRILCQLL------SDPDPWLQIKILRLLRR-YAPMEPEDADK-NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp THHHHHHHHHHHHH------TCCSHHHHHHHHHHHTT-STSSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHhhhcc------cccchHHHHHHHHHHHh-cccCChhhhhH-HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 45666777777652 23444555555555421 11111000000 122233333333566778777777765332
Q ss_pred HHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHH
Q 000274 1078 MKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAF 1157 (1739)
Q Consensus 1078 ~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~aF 1157 (1739)
. . ...-..+..|+..++. +.+..+|-.+|++|.+++......+. ....++..+. .+++..+...+.
T Consensus 260 ~----~-----~~~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~---~~~d~~Ir~~~l 325 (526)
T PF01602_consen 260 P----S-----PELLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL---YDDDPSIRKKAL 325 (526)
T ss_dssp S----S-----HHHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH---CSSSHHHHHHHH
T ss_pred c----c-----hHHHHhhHHHHHHHhh-cccchhehhHHHHHHHhhcccchhhh-hhhhhhheec---CCCChhHHHHHH
Confidence 1 1 1134566777777776 77888999999999999988755666 4333333332 255677888999
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhc
Q 000274 1158 ENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHF 1237 (1739)
Q Consensus 1158 ~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 1237 (1739)
+.+..+++ ..++..++..|.+|++...+..+.-.++..+..|+...... .-
T Consensus 326 ~lL~~l~~-------~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~----------------------~~ 376 (526)
T PF01602_consen 326 DLLYKLAN-------ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD----------------------AE 376 (526)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS----------------------HH
T ss_pred HHHhhccc-------ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch----------------------HH
Confidence 88877665 35677788889999866656667777777777776665321 12
Q ss_pred hHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHH
Q 000274 1238 WFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIH 1317 (1739)
Q Consensus 1238 W~pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~ 1317 (1739)
|+ +..+-++.......|+..+++.+.+++..+...- . .++.-+++.+..... .+
T Consensus 377 ~~--v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~-----~----~~l~~L~~~l~~~~~-----------~~---- 430 (526)
T PF01602_consen 377 WY--VDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR-----E----KILKKLIELLEDISS-----------PE---- 430 (526)
T ss_dssp HH--HHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH-----H----HHHHHHHHHHTSSSS-----------HH----
T ss_pred HH--HHHHHHhhhhccccccchHHHHHHHHhhcChhhh-----H----HHHHHHHHHHHHhhH-----------HH----
Confidence 32 2333444444455678888888888877654321 1 123333444432110 11
Q ss_pred HHHHHHHHHHHHHHHHHH--hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHcC
Q 000274 1318 SLQLLCNLFNTFYKEVCF--MLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGG 1371 (1739)
Q Consensus 1318 aL~~lv~LF~~yf~~l~~--~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~~~ 1371 (1739)
+++.++-++..|-+.+.. ..++++..+..-...+++.+-....+++-.+.....
T Consensus 431 ~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 431 ALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp HHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCC
Confidence 345555566666666554 567777777777777777666666666666665543
No 21
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.90 E-value=21 Score=47.27 Aligned_cols=256 Identities=15% Similarity=0.198 Sum_probs=147.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhc-CchHHHHHHHHHHHHHHHHhccCCcccC---
Q 000274 1058 GSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRN-SRSETIRSLIVDCIVQMIKSKVGSIKSG--- 1133 (1739)
Q Consensus 1058 g~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~-s~~~eVre~IL~cL~qmI~~~~~~IkSG--- 1133 (1739)
.-.++..++..|-+.|.|++..-+ -.|+.-+..++.+ ++...+|-..==.|++-+.++....+-+
T Consensus 10 tlSpD~n~~~~Ae~~l~~~~~~nf-----------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~q 78 (859)
T KOG1241|consen 10 TLSPDQNVRKRAEKQLEQAQSQNF-----------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQ 78 (859)
T ss_pred HcCCCcchHHHHHHHHHHHHhccH-----------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHH
Confidence 345667777888888877654211 2345555555544 3444455443344555555555544432
Q ss_pred -cHHH--------HHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcc---cchHHHHH
Q 000274 1134 -WRSV--------FMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSH---RISLKAIA 1201 (1739)
Q Consensus 1134 -Wk~I--------F~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~---nISL~AI~ 1201 (1739)
|--+ =+.+..+-..+....-..|=+++-.|-.= .+|.+...++|..|..=+.+.... .-+|.||+
T Consensus 79 RWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~---ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealG 155 (859)
T KOG1241|consen 79 RWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACI---ELPQNQWPELIVTLVSNVGEEQASMVKESSLEALG 155 (859)
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHh---hCchhhCHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 3211 01111111112222333455566555431 356788899999998877766554 45677777
Q ss_pred hHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHH
Q 000274 1202 LLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWE 1281 (1739)
Q Consensus 1202 lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~ 1281 (1739)
|+- ..+. |+ . -.+.....-+-+..|..+ ..+...||-.|+..|.+.|.--+..|..+.=.
T Consensus 156 yic---e~i~----pe-v----------l~~~sN~iLtaIv~gmrk--~e~s~~vRLaa~~aL~nsLef~~~nF~~E~er 215 (859)
T KOG1241|consen 156 YIC---EDID----PE-V----------LEQQSNDILTAIVQGMRK--EETSAAVRLAALNALYNSLEFTKANFNNEMER 215 (859)
T ss_pred HHH---ccCC----HH-H----------HHHHHhHHHHHHHhhccc--cCCchhHHHHHHHHHHHHHHHHHHhhccHhhh
Confidence 632 2221 00 0 000111222233333222 24567899999999999999777777654333
Q ss_pred HHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhhcCCChhHHHHHH
Q 000274 1282 SIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVC-FMLPPLLSLLLDCAKKPDQSVVSISL 1360 (1739)
Q Consensus 1282 ~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~-~~L~~~l~lL~~cI~q~ne~ia~ig~ 1360 (1739)
.++- +.+...++- .+ .+-+.-|++.++++..-||+.+. +|.+.++.+-+.-++++|+++|--|+
T Consensus 216 n~iM-------qvvcEatq~------~d--~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQai 280 (859)
T KOG1241|consen 216 NYIM-------QVVCEATQS------PD--EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAI 280 (859)
T ss_pred ceee-------eeeeecccC------Cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 3222 222332221 11 46677899999999999999998 57778999999999999999998887
Q ss_pred HH
Q 000274 1361 GA 1362 (1739)
Q Consensus 1361 ~c 1362 (1739)
+-
T Consensus 281 EF 282 (859)
T KOG1241|consen 281 EF 282 (859)
T ss_pred HH
Confidence 65
No 22
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=88.67 E-value=51 Score=44.86 Aligned_cols=175 Identities=16% Similarity=0.172 Sum_probs=118.8
Q ss_pred HhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 000274 1187 ANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFD 1266 (1739)
Q Consensus 1187 ~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~ 1266 (1739)
+-+..+.+||-.|+-......+++....-|.. + + .......+.-..+..|- ..|.+.|||.+||..+-.
T Consensus 528 aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~-~---d-----~~~~v~~m~~~tl~rL~--a~d~DqeVkeraIscmgq 596 (1233)
T KOG1824|consen 528 AVGDPFYKISAEALLVCQQLVKVIRPLQPPSS-F---D-----ASPYVKTMYDCTLQRLK--ATDSDQEVKERAISCMGQ 596 (1233)
T ss_pred HhcCchHhhhHHHHHHHHHHHHHhcccCCCcc-C---C-----CChhHHHHHHHHHHHHh--cccccHHHHHHHHHHHHH
Confidence 34556788999998888877788764311100 0 0 00111122223333322 258889999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHhHHHHHH-HhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHH
Q 000274 1267 LLNERGSKFSASFWESIFHRVLFPIFD-HVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKE-VCFMLPPLLSLL 1344 (1739)
Q Consensus 1267 iL~~~G~~f~~~~W~~If~~VLfPIfd-~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~-l~~~L~~~l~lL 1344 (1739)
++...|+.++.+ ...+| |+|- .++. .-|+.-|.+.++.++..=.+. +.+.+.+++..|
T Consensus 597 ~i~~fgD~l~~e-----L~~~L-~il~eRl~n--------------EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l 656 (1233)
T KOG1824|consen 597 IIANFGDFLGNE-----LPRTL-PILLERLGN--------------EITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL 656 (1233)
T ss_pred HHHHHhhhhhhh-----hHHHH-HHHHHHHhc--------------hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence 999999655542 22333 4443 3431 357778888888888765442 457789999999
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHHHhh
Q 000274 1345 LDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRDASYT 1392 (1739)
Q Consensus 1345 ~~cI~q~ne~ia~ig~~cL~~Li~~~~~~f~~~~W~~i~~~~~~~~~~ 1392 (1739)
..+.+..+..+--.....+..|+..-+..++.+..+.++.-+-.+...
T Consensus 657 ~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise 704 (1233)
T KOG1824|consen 657 ASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE 704 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH
Confidence 999999888888888899999999999999999888887665554433
No 23
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.58 E-value=28 Score=39.91 Aligned_cols=144 Identities=16% Similarity=0.195 Sum_probs=86.7
Q ss_pred HHHhccCcc--cchHHHHHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHH
Q 000274 1185 RFANNKTSH--RISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALE 1262 (1739)
Q Consensus 1185 ~F~~q~~d~--nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALq 1262 (1739)
.++++-.+. .++-+|+.++..++..+... .+.+...++| .|-+.+.|...-||..|.+
T Consensus 57 ~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-----------------~~~~~~~~l~---~Ll~~~~~~~~~i~~~a~~ 116 (228)
T PF12348_consen 57 AIIKQLSDLRSKVSKTACQLLSDLARQLGSH-----------------FEPYADILLP---PLLKKLGDSKKFIREAANN 116 (228)
T ss_dssp HHHH-S-HH---HHHHHHHHHHHHHHHHGGG-----------------GHHHHHHHHH---HHHHGGG---HHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-----------------HHHHHHHHHH---HHHHHHccccHHHHHHHHH
Confidence 344444443 47788999999999888643 1223334444 4555677778899999999
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHH---HHHH--HhH
Q 000274 1263 VLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFY---KEVC--FML 1337 (1739)
Q Consensus 1263 tLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf---~~l~--~~L 1337 (1739)
+|-.++...+ +++ .++++++..... ++.| ..+..++..+..++..+- ..+. ..+
T Consensus 117 ~L~~i~~~~~--~~~--------~~~~~~l~~~~~---------~Kn~--~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 117 ALDAIIESCS--YSP--------KILLEILSQGLK---------SKNP--QVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHHHTTS---H----------HHHHHHHHHHTT----------S-H--HHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHHHCC--cHH--------HHHHHHHHHHHh---------CCCH--HHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 9999888655 111 455666665432 2233 444455555555555544 2222 235
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 000274 1338 PPLLSLLLDCAKKPDQSVVSISLGALVHLIEV 1369 (1739)
Q Consensus 1338 ~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~ 1369 (1739)
+.+...+..|+...+..+-..|..||..+...
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999888443
No 24
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=84.36 E-value=61 Score=37.17 Aligned_cols=180 Identities=16% Similarity=0.141 Sum_probs=106.4
Q ss_pred ccchHHHHHHHHHhcccccccchHHHHHHHH---HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhh
Q 000274 1021 RVFSLQKLVEISYYNMARIRMVWARIWSVLA---NHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILK 1097 (1739)
Q Consensus 1021 r~FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~---~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLk 1097 (1739)
|.=.|++|-.+...| ........+++.+. .-+.......+..|+..|+..+..++...-.. +.. +-..++.
T Consensus 24 r~~al~~L~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~--~~~--~~~~~l~ 97 (228)
T PF12348_consen 24 RVEALQKLRSLIKGN--APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH--FEP--YADILLP 97 (228)
T ss_dssp HHHHHHHHHHHHHH---B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG--GHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh--HHH--HHHHHHH
Confidence 455688888888887 12223345566666 44444444455678899999999888765322 111 2244555
Q ss_pred hHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhh---hhhhh-
Q 000274 1098 PFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHF---DQVVG- 1173 (1739)
Q Consensus 1098 PFe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~---~~l~~- 1173 (1739)
++..... ....-|++...+||..|++..+ .+=+.++.++..+..+++..+-..+.+.+..++..+- ..+..
T Consensus 98 ~Ll~~~~-~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 98 PLLKKLG-DSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHGGG----HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHc-cccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 5544333 3456799999999999998765 1225669999999988888787788888887777655 22221
Q ss_pred hhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhc
Q 000274 1174 DCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAE 1212 (1739)
Q Consensus 1174 ~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~ 1212 (1739)
..+..++.++..+... .+..+=-.|-..||.+.....+
T Consensus 173 ~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSD-ADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHTS-S-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHCCH
Confidence 3467888888888763 4556666677777777665543
No 25
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.33 E-value=2.2e+02 Score=40.16 Aligned_cols=259 Identities=17% Similarity=0.268 Sum_probs=150.4
Q ss_pred hhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCc---ccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhh--h
Q 000274 1094 DILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSI---KSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEH--F 1168 (1739)
Q Consensus 1094 ~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~I---kSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~--~ 1168 (1739)
..|.||.. ..+.+..|+..++.||..++...+..- .+--..+|+++..++. +.+.+-..|-+.+..|+.+- .
T Consensus 96 ~~l~~~~~--~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h-~~pkvRk~a~~~i~~VL~~p~~~ 172 (1176)
T KOG1248|consen 96 NILAPFLT--AESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAH-KKPKVRKAAQRGIAAVLKGPPFA 172 (1176)
T ss_pred HHHHHHHh--hhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHcCCCCC
Confidence 34555544 235677899999999999999865432 1123456777777665 44566677888888777531 0
Q ss_pred -hh-hhh--hhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHH
Q 000274 1169 -DQ-VVG--DCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAG 1244 (1739)
Q Consensus 1169 -~~-l~~--~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~ 1244 (1739)
+. .|. ....-|+.-+..+....... --+..+.+|+. -+.. +| .++...
T Consensus 173 ~~~~HpA~~~vak~cl~~~e~~~~~a~~t-~v~~~L~Ll~~---~~~~--~p----------------------~~li~s 224 (1176)
T KOG1248|consen 173 PDAEHPASLSVAKFCLALIESKLGSAENT-TVLRSLMLLRD---VLST--FP----------------------RPLIKS 224 (1176)
T ss_pred ccccchHHHHHHHHHHHHHHhhhchHHHH-HHHHHHHHHHH---hhcc--CC----------------------HHHHHH
Confidence 11 111 22233344444443311111 11334443332 2221 11 345555
Q ss_pred Hhhhc----CCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHH
Q 000274 1245 LSDLT----SDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQ 1320 (1739)
Q Consensus 1245 Ls~l~----~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~ 1320 (1739)
|++.| .-..-.|+..++|+|-+++..+...++.++-.. +|--+++ +.....+ ..-...|+ .++.
T Consensus 225 l~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~----lL~al~~-l~ps~~D--~~~t~~W~-----~v~~ 292 (1176)
T KOG1248|consen 225 LCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNAR----LLTALMT-LSPSEND--DLLTVAWL-----KVLN 292 (1176)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHH----HHHHHHH-hCCCccc--hHHHHHHH-----HHHH
Confidence 55554 346789999999999999999988777654333 2322222 2111100 00114675 4444
Q ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCC---CC------------CHhhHHHHHH
Q 000274 1321 LLCNLFNTF-YKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGH---QF------------SESDWDTLLK 1384 (1739)
Q Consensus 1321 ~lv~LF~~y-f~~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~~~~---~f------------~~~~W~~i~~ 1384 (1739)
..-..|... -+.--..+++++.+++.|...+++++...+.+|+..++..... .. --..|+.|..
T Consensus 293 ~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~kf~~~~~~ilq 372 (1176)
T KOG1248|consen 293 EAHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVTVIDALCSKQLHSLLDYKFHAVWRFILQ 372 (1176)
T ss_pred HHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHcchHHHHHHHHHH
Confidence 444334332 2222356889999999988999999999999999998876444 11 1246999998
Q ss_pred HHHHHHhhcCc
Q 000274 1385 SIRDASYTTQP 1395 (1739)
Q Consensus 1385 ~~~~~~~~T~p 1395 (1739)
.+.-+|+..=+
T Consensus 373 i~s~~fek~G~ 383 (1176)
T KOG1248|consen 373 ILSALFEKCGE 383 (1176)
T ss_pred HHHHHHHHhhh
Confidence 88888887654
No 26
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=82.38 E-value=1.2e+02 Score=39.21 Aligned_cols=141 Identities=20% Similarity=0.245 Sum_probs=81.9
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHH-HhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHH
Q 000274 1241 MLAGLSDLTSDPRPEVRSCALEVLFDLL-NERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSL 1319 (1739)
Q Consensus 1241 LL~~Ls~l~~D~R~EVR~~ALqtLF~iL-~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL 1319 (1739)
++.+|.....-...-|=.--+..+.++| ..||..+....|+.+++ ++.-+++.+........ +..+. +.....+
T Consensus 302 vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~-i~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~ 376 (464)
T PF11864_consen 302 VLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILD-IIEEIFDKIQPFDSWYS-NSSSL---DQLSSNL 376 (464)
T ss_pred HHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHH-HHHHHHhhccccccccc-cccch---HHHHHHH
Confidence 7777777765444456667778888888 89999999999998774 55446666643211100 00000 2233333
Q ss_pred HHHHHHHHHHHHH--HHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHHHh
Q 000274 1320 QLLCNLFNTFYKE--VCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRDASY 1391 (1739)
Q Consensus 1320 ~~lv~LF~~yf~~--l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~~~~~f~~~~W~~i~~~~~~~~~ 1391 (1739)
..++...-+-++. +...-+++++++..+...-.+..+..-+ . -....---....|..-+.-+.+-|.
T Consensus 377 ~~l~~~ie~L~~~~~~~g~~~~~~~f~~~~~~~lp~s~~~~vl-~----~~~~~~~Ps~~~W~~n~~~ll~~F~ 445 (464)
T PF11864_consen 377 HSLLSSIESLYEQHDFNGPKDKLFNFFERVHSYLPDSSALLVL-F----YEERSCSPSNPDWLDNLQKLLDRFY 445 (464)
T ss_pred HHHHHHHHHHHhCCCcCccHHHHHHHHHHHhccCCHHHHHHHH-H----HHhcccCCCChHHHHHHHHHHHHHh
Confidence 3333333333333 2224567888888888776666655443 1 1111112234489998888888777
No 27
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=81.48 E-value=30 Score=42.39 Aligned_cols=161 Identities=12% Similarity=0.206 Sum_probs=100.5
Q ss_pred HHHHHhhhhhhcchhhHHhhhhhHHH----HHhcCchHHHHHH-HHHHHHHHHHhccCCcccCcHHHHHHHHHhh-----
Q 000274 1076 LSMKYLERAELTNFTFQNDILKPFVV----LIRNSRSETIRSL-IVDCIVQMIKSKVGSIKSGWRSVFMIFTAAA----- 1145 (1739)
Q Consensus 1076 Ls~kfLe~eEL~~f~fQ~~fLkPFe~----im~~s~~~eVre~-IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa----- 1145 (1739)
|...|.++.+-.+ ..-+.|+.|+.. -+++ ..++.|+- ||.|+..+|..-++.+...=..||+.+=.+.
T Consensus 50 Li~t~i~~~~~~~-~v~~~~i~~l~~~vL~DY~~-~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~ 127 (319)
T PF08767_consen 50 LIETFISKAEDPE-EVANNFIPPLLDAVLGDYQN-SVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMIN 127 (319)
T ss_dssp HHHHHHHT-S-HH-HHHHHTHHHHHHHHHHHHHH-S-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccCCHH-HHHHHHHHHHHHHHHHHHhc-CCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 4445554433111 134566666544 2333 34555554 6788888888888777776666655332221
Q ss_pred cc--hhHHHHHHHHHHHHHHHhhhhhh---hhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCC
Q 000274 1146 DD--EVESIVESAFENVEQVILEHFDQ---VVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDL 1220 (1739)
Q Consensus 1146 ~d--~~e~iV~~aF~~l~~I~~d~~~~---l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~ 1220 (1739)
+| ..+..-..=|..++.++..+|.. ++.+.|..+++++ .++-+....+|+-.++..|..+...+...
T Consensus 128 ~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi-~wg~kh~~~~I~~~~L~~l~~ll~~~~~~------- 199 (319)
T PF08767_consen 128 KDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSI-VWGFKHTNREISETGLNILLELLNNVSKT------- 199 (319)
T ss_dssp STSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHH-HHHHTSSSHHHHHHHHHHHHHHHHHHHH--------
T ss_pred hhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHHhc-------
Confidence 11 24556666788888888877655 4679999999998 66777778899999999998888888751
Q ss_pred CCCCccccCccchhhhchHHHHHHHhhhcCC
Q 000274 1221 KPIDVETDATFDVTEHFWFPMLAGLSDLTSD 1251 (1739)
Q Consensus 1221 ~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D 1251 (1739)
+.......+..+++.+|...-.+.+|
T Consensus 200 -----~~~~~~~F~~~y~~~il~~if~vltD 225 (319)
T PF08767_consen 200 -----NPEFANQFYQQYYLDILQDIFSVLTD 225 (319)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 00112234566777777766666554
No 28
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.01 E-value=86 Score=40.69 Aligned_cols=274 Identities=15% Similarity=0.173 Sum_probs=154.0
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCccc
Q 000274 1053 HFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKS 1132 (1739)
Q Consensus 1053 hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkS 1132 (1739)
.|+....+++..|+..|+-+|..++- +...+++|-...-.+.|+..++..+....+...+.-+|.++...+. =.-
T Consensus 156 ~fi~Ll~s~~~~v~eQavWALgNIag---ds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~--P~P 230 (514)
T KOG0166|consen 156 IFIQLLSSPSADVREQAVWALGNIAG---DSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN--PSP 230 (514)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhcccc---CChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC--CCC
Confidence 48888999999999999999987764 3355677778888999999888776556677788899999886653 122
Q ss_pred CcHHHHHHHHH---hhcchhHHHHHHHHHHHHHHHhhh---hhhhh-hhhHHHHHHHHHHHHhccCcccchHHHHHhHHH
Q 000274 1133 GWRSVFMIFTA---AADDEVESIVESAFENVEQVILEH---FDQVV-GDCFMDCVNCLIRFANNKTSHRISLKAIALLRI 1205 (1739)
Q Consensus 1133 GWk~IF~IL~~---aa~d~~e~iV~~aF~~l~~I~~d~---~~~l~-~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~ 1205 (1739)
-|..|=.+|-+ --.+.++.+..-|--.+..+.+.- .+.+. .+....+|.+|....-+ +-..|+. .
T Consensus 231 ~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~-----v~~PaLR---a 302 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPK-----VVTPALR---A 302 (514)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcc-----cccHHHh---h
Confidence 45444444433 333445556555555554444322 22222 25666677777553322 2222222 2
Q ss_pred HHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 000274 1206 CEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTS-DPRPEVRSCALEVLFDLLNERGSKFSASFWESIF 1284 (1739)
Q Consensus 1206 ~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~-D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If 1284 (1739)
++. +..|. + .....-+-..+|..|..+.+ .+..-+|+.|+=++-+|-. |.. +.=+.|+
T Consensus 303 iGN-IvtG~------------d---~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~---~qiqaVi 361 (514)
T KOG0166|consen 303 IGN-IVTGS------------D---EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQ---EQIQAVI 361 (514)
T ss_pred ccc-eeecc------------H---HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCH---HHHHHHH
Confidence 222 22210 0 00111233345666677766 4444599999999988876 442 2356677
Q ss_pred HHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 000274 1285 HRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALV 1364 (1739)
Q Consensus 1285 ~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~ 1364 (1739)
.-=|+|.+-.+.+..+-. ......|.-. +.+..|--+. ..|+-.. ++++.+-++| .|.+.+. ......+|.
T Consensus 362 da~l~p~Li~~l~~~ef~-~rKEAawaIs--N~ts~g~~~q-i~yLv~~-giI~plcdlL---~~~D~~i-i~v~Ld~l~ 432 (514)
T KOG0166|consen 362 DANLIPVLINLLQTAEFD-IRKEAAWAIS--NLTSSGTPEQ-IKYLVEQ-GIIKPLCDLL---TCPDVKI-ILVALDGLE 432 (514)
T ss_pred HcccHHHHHHHHhccchH-HHHHHHHHHH--hhcccCCHHH-HHHHHHc-CCchhhhhcc---cCCChHH-HHHHHHHHH
Confidence 777778887776554310 0123457311 2222222110 1122111 3566666666 3444444 666677777
Q ss_pred HHHHH
Q 000274 1365 HLIEV 1369 (1739)
Q Consensus 1365 ~Li~~ 1369 (1739)
+++..
T Consensus 433 nil~~ 437 (514)
T KOG0166|consen 433 NILKV 437 (514)
T ss_pred HHHHH
Confidence 66554
No 29
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=79.23 E-value=17 Score=40.50 Aligned_cols=110 Identities=17% Similarity=0.174 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHH--HH
Q 000274 1062 DEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSV--FM 1139 (1739)
Q Consensus 1062 n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkSGWk~I--F~ 1139 (1739)
|+.||.-|+-++..|+.+|-..-| .+ -|...-+-+..++.||...+.||.+++... .+| |+.. +.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve--------~~-~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d--~ik--~k~~l~~~ 67 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE--------PY-LPNLYKCLRDEDPLVRKTALLVLSHLILED--MIK--VKGQLFSR 67 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH--------hH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--cee--ehhhhhHH
Confidence 457888999999999988732211 11 122222234678999999999999999863 333 3332 34
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 000274 1140 IFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIR 1185 (1739)
Q Consensus 1140 IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~ 1185 (1739)
++. +-.|+++.|...|=..+..+.....+......|.++|.-|..
T Consensus 68 ~l~-~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 68 ILK-LLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HHH-HHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 443 447888888888887777776654455555666555544433
No 30
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=77.59 E-value=45 Score=40.34 Aligned_cols=65 Identities=29% Similarity=0.390 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHHHHhccC-CCCHHHH--HHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 000274 1253 RPEVRSCALEVLFDLLNERGS-KFSASFW--ESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNT 1328 (1739)
Q Consensus 1253 R~EVR~~ALqtLF~iL~~~G~-~f~~~~W--~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~ 1328 (1739)
..+||..|++.+|+++..||. .|+...+ ......-+..+|.......+ .+....|..|+++|+..
T Consensus 77 ~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-----------~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 77 DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSEN-----------PELQAIAVEGLCKLLLS 144 (298)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHhc
Confidence 789999999999999999995 4565555 12222333344444432211 45777889999998864
No 31
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=76.58 E-value=52 Score=39.27 Aligned_cols=211 Identities=18% Similarity=0.263 Sum_probs=116.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HHHhhhhhhcchhhHHhhhhhHHH-HHhcCchHHHHHHHHHHHHHHHHh
Q 000274 1048 SVLANHFISAGSHHDEKIAMYAIDSLRQLS-MKYLERAELTNFTFQNDILKPFVV-LIRNSRSETIRSLIVDCIVQMIKS 1125 (1739)
Q Consensus 1048 ~vl~~hf~~vg~~~n~~va~~AiDsLrQLs-~kfLe~eEL~~f~fQ~~fLkPFe~-im~~s~~~eVre~IL~cL~qmI~~ 1125 (1739)
.++.++|.. +-.+......|++.|..|. |+-+..+. -..+++.+-. +-..+.....|..+.+-+..+++.
T Consensus 41 ~~L~~F~~~--rl~D~~~~~~~l~gl~~L~~~~~~~~~~------~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~ 112 (262)
T PF14500_consen 41 QVLLDFFCS--RLDDHACVQPALKGLLALVKMKNFSPES------AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN 112 (262)
T ss_pred HHHHHHHHH--HhccHhhHHHHHHHHHHHHhCcCCChhh------HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH
Confidence 355666654 2233344455677777665 22221111 1223333211 111133456899999999999999
Q ss_pred ccCCccc-CcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH-----HHhccCcccchHHH
Q 000274 1126 KVGSIKS-GWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIR-----FANNKTSHRISLKA 1199 (1739)
Q Consensus 1126 ~~~~IkS-GWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~-----F~~q~~d~nISL~A 1199 (1739)
+...+++ |=.-|.+++..+-.++++..+..+|+.++.++..|- + .+...++-+++.- |.-...|+ ...++
T Consensus 113 ~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~-~~~~e~lFd~~~cYFPI~F~pp~~dp-~~IT~ 188 (262)
T PF14500_consen 113 HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I-SEFAEDLFDVFSCYFPITFRPPPNDP-YGITR 188 (262)
T ss_pred hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c-chhHHHHHHHhhheeeeeeeCCCCCC-CCCCH
Confidence 8877753 667888899988888899999999999988776543 1 2223333333322 22222222 12222
Q ss_pred HHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHH
Q 000274 1200 IALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASF 1279 (1739)
Q Consensus 1200 I~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~ 1279 (1739)
-++=..+...+.. ...+..+=+|+|.. ++..+ -+.|+.-+++||-.++..||..==.+.
T Consensus 189 edLk~~L~~cl~s------------------~~~fa~~~~p~Lle--KL~s~-~~~~K~D~L~tL~~c~~~y~~~~~~~~ 247 (262)
T PF14500_consen 189 EDLKRALRNCLSS------------------TPLFAPFAFPLLLE--KLDST-SPSVKLDSLQTLKACIENYGADSLSPH 247 (262)
T ss_pred HHHHHHHHHHhcC------------------cHhhHHHHHHHHHH--HHcCC-CcHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 2222222222221 11222344554432 33332 456999999999999999997533456
Q ss_pred HHHHHHHhHHHH
Q 000274 1280 WESIFHRVLFPI 1291 (1739)
Q Consensus 1280 W~~If~~VLfPI 1291 (1739)
|..||..+=+-+
T Consensus 248 ~~~iw~~lk~Ei 259 (262)
T PF14500_consen 248 WSTIWNALKFEI 259 (262)
T ss_pred HHHHHHHHHHHH
Confidence 777766544433
No 32
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.20 E-value=70 Score=42.35 Aligned_cols=62 Identities=23% Similarity=0.355 Sum_probs=44.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 000274 1058 GSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKS 1125 (1739)
Q Consensus 1058 g~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~ 1125 (1739)
-.|+...+|..|++++..|++.-..++.+.+. |..++..+ ...+++.||.+.++-|.-|...
T Consensus 338 ls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sL----kterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 338 LSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSL----KTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred hhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHh----ccccchHHHHHHHHHHHHHhch
Confidence 35888899999999999998764445554432 55544433 3357888999999998887654
No 33
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=75.86 E-value=2.5e+02 Score=36.71 Aligned_cols=262 Identities=14% Similarity=0.169 Sum_probs=138.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcc-cCcHHHHHH
Q 000274 1062 DEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIK-SGWRSVFMI 1140 (1739)
Q Consensus 1062 n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~Ik-SGWk~IF~I 1140 (1739)
+......+++.|+.+.... ...++ ...+ .|+......++++.||..++..|..++......+. -.=..++..
T Consensus 51 ~~e~v~~~~~iL~~~l~~~-~~~~l-----~~~~-~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~ 123 (503)
T PF10508_consen 51 NREQVELICDILKRLLSAL-SPDSL-----LPQY-QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL 123 (503)
T ss_pred ChHHHHHHHHHHHHHHhcc-CHHHH-----HHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH
Confidence 4444456777776553322 22221 1222 23333333467899999999999998866543111 011124444
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHhhh--hhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCC
Q 000274 1141 FTAAADDEVESIVESAFENVEQVILEH--FDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGG 1218 (1739)
Q Consensus 1141 L~~aa~d~~e~iV~~aF~~l~~I~~d~--~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~ 1218 (1739)
+-.+-.+++..+.+.|-..++.+.... +..+..... +..|.....+..+ .+-+...+++..++..=
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~---~~~L~~l~~~~~~-~vR~Rv~el~v~i~~~S-------- 191 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL---LSKLKSLMSQSSD-IVRCRVYELLVEIASHS-------- 191 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch---HHHHHHHHhccCH-HHHHHHHHHHHHHHhcC--------
Confidence 444456777888899999988876532 222322111 4555555554222 23345555544432110
Q ss_pred CCCCCCccccCccchhhhchH-HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhh
Q 000274 1219 DLKPIDVETDATFDVTEHFWF-PMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRH 1297 (1739)
Q Consensus 1219 ~~~~~~~~~~~~~~~~~~lW~-pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~ 1297 (1739)
.+.....|. .+|..+-+...+++.=||-.|+++|-++-..+. -.+.+.+.=+++.+..+..
T Consensus 192 ------------~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~------g~~yL~~~gi~~~L~~~l~ 253 (503)
T PF10508_consen 192 ------------PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH------GLQYLEQQGIFDKLSNLLQ 253 (503)
T ss_pred ------------HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh------HHHHHHhCCHHHHHHHHHh
Confidence 011111221 245555555666888899999999999877222 2556666656666655543
Q ss_pred hcccccccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 000274 1298 AGKESLISSEDEWFRETSI-HSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHL 1366 (1739)
Q Consensus 1298 ~~~~~~~~~~~~Wl~eT~~-~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~L 1366 (1739)
..+. ++.+ ....+ -.+...+.++...-..+....+.|+..|..++...+.++.-++..++-.+
T Consensus 254 ~~~~-----dp~~-~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~i 317 (503)
T PF10508_consen 254 DSEE-----DPRL-SSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQI 317 (503)
T ss_pred cccc-----CCcc-cchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 3221 1111 11111 11233344444322334445788888888888888777666666665433
No 34
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.78 E-value=2.6e+02 Score=37.27 Aligned_cols=102 Identities=14% Similarity=0.235 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----HHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHH
Q 000274 1048 SVLANHFISAGSHHDEKIAMYAIDSLRQLSM----KYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMI 1123 (1739)
Q Consensus 1048 ~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~----kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI 1123 (1739)
+.+-+-|.+...|+++.+|..|+.++.|..+ .+.-+ -..||.-+-. ..+..+++||..|=+.+.-++
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~--------iD~Fle~lFa-lanD~~~eVRk~vC~alv~Ll 243 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVH--------IDKFLEILFA-LANDEDPEVRKNVCRALVFLL 243 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHH--------HHHHHHHHHH-HccCCCHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999998743 11100 0123322222 235678999999999999999
Q ss_pred HhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHH
Q 000274 1124 KSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFE 1158 (1739)
Q Consensus 1124 ~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~aF~ 1158 (1739)
+.+.+.|-..-+.|.+-.-.--+|.+|++.-.|-+
T Consensus 244 evr~dkl~phl~~IveyML~~tqd~dE~VALEACE 278 (885)
T KOG2023|consen 244 EVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACE 278 (885)
T ss_pred HhcHHhcccchHHHHHHHHHHccCcchhHHHHHHH
Confidence 99999999998888876666667777776544444
No 35
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.85 E-value=4.1e+02 Score=36.23 Aligned_cols=133 Identities=16% Similarity=0.139 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcch--hHHHH-HHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 000274 1107 RSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDE--VESIV-ESAFENVEQVILEHFDQVVGDCFMDCVNCL 1183 (1739)
Q Consensus 1107 ~~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~--~e~iV-~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL 1183 (1739)
+++-++-+||+.|.= -|++-...-..|-+||...|... +.++- ..=|+|+.-|++=.-. ..--.-.|+||
T Consensus 246 ~dPFLQi~iLrlLri----LGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~---~~LrvlainiL 318 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRI----LGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSN---SGLRVLAINIL 318 (866)
T ss_pred CchHHHHHHHHHHHH----hcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCC---chHHHHHHHHH
Confidence 344455555554442 24444445566667777666421 11100 1128888777642211 24455679999
Q ss_pred HHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHH
Q 000274 1184 IRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEV 1263 (1739)
Q Consensus 1184 ~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqt 1263 (1739)
.+|..|. |.||-.-|+..|-.+...= .+.-++=-.-++. |..|++.-+|.+|++.
T Consensus 319 gkFL~n~-d~NirYvaLn~L~r~V~~d--------------------~~avqrHr~tIle----CL~DpD~SIkrralEL 373 (866)
T KOG1062|consen 319 GKFLLNR-DNNIRYVALNMLLRVVQQD--------------------PTAVQRHRSTILE----CLKDPDVSIKRRALEL 373 (866)
T ss_pred HHHhcCC-ccceeeeehhhHHhhhcCC--------------------cHHHHHHHHHHHH----HhcCCcHHHHHHHHHH
Confidence 9999975 4576555555544322110 0001111223444 4478999999999999
Q ss_pred HHHHHHhc
Q 000274 1264 LFDLLNER 1271 (1739)
Q Consensus 1264 LF~iL~~~ 1271 (1739)
+|.++...
T Consensus 374 s~~lvn~~ 381 (866)
T KOG1062|consen 374 SYALVNES 381 (866)
T ss_pred HHHHhccc
Confidence 99988754
No 36
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=69.73 E-value=51 Score=36.07 Aligned_cols=130 Identities=23% Similarity=0.301 Sum_probs=78.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHhHHHHHHHhhhhccccc-ccchhhhHH----HHHHHHHH
Q 000274 1248 LTSDPRPEVRSCALEVLFDLLNERG--SKFSASFWESIFHRVLFPIFDHVRHAGKESL-ISSEDEWFR----ETSIHSLQ 1320 (1739)
Q Consensus 1248 l~~D~R~EVR~~ALqtLF~iL~~~G--~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~-~~~~~~Wl~----eT~~~aL~ 1320 (1739)
.....+.-=|+.|++-|-+++.... ..++...|..||. .||-.+..-+..-.... .+....=.. +.+..+|+
T Consensus 12 ~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ife-aL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~~lR 90 (155)
T PF11640_consen 12 LLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFE-ALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCASALR 90 (155)
T ss_pred HHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHH-HHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHH
Confidence 3345577889999999999998765 8889999999994 67777766543221000 001111112 44555566
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHH---HHH--cCCCCCHhhHH
Q 000274 1321 LLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPD-QSVVSISLGALVHL---IEV--GGHQFSESDWD 1380 (1739)
Q Consensus 1321 ~lv~LF~~yf~~l~~~L~~~l~lL~~cI~q~n-e~ia~ig~~cL~~L---i~~--~~~~f~~~~W~ 1380 (1739)
.++......+... -+..++..+...+..++ +.+.-+|..+.+-| +.. ....++..+|.
T Consensus 91 ~~ve~~~~~~k~k--t~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~~~~~ehL~~~~W~ 154 (155)
T PF11640_consen 91 LFVEKSNSRLKRK--TVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSYPPHVEHLSPKQWE 154 (155)
T ss_pred HHHHHHHhhcccc--hHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCCChHHHHCcHhhcC
Confidence 6665555544332 24556666777777777 45566666555544 332 55567777774
No 37
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.96 E-value=2e+02 Score=41.96 Aligned_cols=229 Identities=19% Similarity=0.338 Sum_probs=128.5
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh---hhcchhhHHhhhhhHHHHHhcC-----ch
Q 000274 1037 ARIRMVWARIWSVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERA---ELTNFTFQNDILKPFVVLIRNS-----RS 1108 (1739)
Q Consensus 1037 ~Rirl~W~~IW~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~e---EL~~f~fQ~~fLkPFe~im~~s-----~~ 1108 (1739)
+.++.-|..|+.+ |...+...+..+...+.+.+-++....++.- |.. .| .|-++-|+..+.+. ..
T Consensus 1063 ~nikSGWk~if~i----~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~--sf-~d~v~cl~~F~~~~~~~~~s~ 1135 (1514)
T KOG0929|consen 1063 SNIKSGWKNIFKI----FTTAASDSSKNIVELAFETVSKILQELFENVFPQEMD--SF-KDCVKCLEEFTKNLGFPDDSL 1135 (1514)
T ss_pred hhhhhhhhHHHHH----HHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhH--HH-HHHHHHHHHHHHhcCCCccch
Confidence 4566667665554 5566777777888888777765544444221 111 12 34556666665432 12
Q ss_pred HHHHHHHHHHHHHHHHh-ccCCc-----------ccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhh---
Q 000274 1109 ETIRSLIVDCIVQMIKS-KVGSI-----------KSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVG--- 1173 (1739)
Q Consensus 1109 ~eVre~IL~cL~qmI~~-~~~~I-----------kSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~--- 1173 (1739)
..| +.+--|.....+. ..+.+ .+||.+++-.++....+....+-..+-+.+-.|+.+|-+....
T Consensus 1136 ~aI-~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~W 1214 (1514)
T KOG0929|consen 1136 NAI-RFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFW 1214 (1514)
T ss_pred HHH-HHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHH
Confidence 223 2333455554444 22233 3599999999998877555556666777776676655433322
Q ss_pred -hhHHHHHHHHHHHHhc--cCccc-----chHHHHHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHH
Q 000274 1174 -DCFMDCVNCLIRFANN--KTSHR-----ISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGL 1245 (1739)
Q Consensus 1174 -~~f~dlI~cL~~F~~q--~~d~n-----ISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L 1245 (1739)
+.|. .|+.=|..- ..++. .+-+.+.-|+.+.+-...- .+....+--.+|.-|
T Consensus 1215 e~v~~---~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~-----------------~~~l~~lL~~~~~ll 1274 (1514)
T KOG0929|consen 1215 EDVFR---ILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQF-----------------FKQLNNLLPKVLGLL 1274 (1514)
T ss_pred HHHHH---heeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
Confidence 3333 122222222 22211 2222233333333332211 011112333456666
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHH
Q 000274 1246 SDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDH 1294 (1739)
Q Consensus 1246 s~l~~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~ 1294 (1739)
..++..+...+-...+..|.+.+...|..|+...|+.+++-+ .-+|+.
T Consensus 1275 ~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~-~e~~~~ 1322 (1514)
T KOG0929|consen 1275 VGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCI-LEAFKT 1322 (1514)
T ss_pred HHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHH-HHHHHh
Confidence 777777788899999999999999999999999999999643 355553
No 38
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=68.53 E-value=78 Score=40.26 Aligned_cols=144 Identities=18% Similarity=0.213 Sum_probs=92.0
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHH
Q 000274 1242 LAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQL 1321 (1739)
Q Consensus 1242 L~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~ 1321 (1739)
..-|..+..+++.+-|++|+.-|..++..- .|+ .|+..|.++|.-+|+.+....+ ..-..+||+.
T Consensus 289 ~~~l~~~~g~e~a~~~k~alsel~~m~~e~--sfs--vWeq~f~~iL~~l~EvL~d~~~-----------~~~k~laLrv 353 (516)
T KOG2956|consen 289 ADLLKEISGSERASERKEALSELPKMLCEG--SFS--VWEQHFAEILLLLLEVLSDSED-----------EIIKKLALRV 353 (516)
T ss_pred HHHHHhccCccchhHHHHHHHHHHHHHHcc--chh--HHHHHHHHHHHHHHHHHccchh-----------hHHHHHHHHH
Confidence 344444555689999999999998887743 344 4999999999999999864322 2445678888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHcC------------CCCCHhhHHHHHHHHHHH
Q 000274 1322 LCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGG------------HQFSESDWDTLLKSIRDA 1389 (1739)
Q Consensus 1322 lv~LF~~yf~~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~~~------------~~f~~~~W~~i~~~~~~~ 1389 (1739)
+.++.+.-=..|-.--.-...=++.|-+..++...+.+-.|.-.++.+-- -.-++..--.+++.+.++
T Consensus 354 L~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl 433 (516)
T KOG2956|consen 354 LREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKL 433 (516)
T ss_pred HHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHH
Confidence 88887764444432222233345566677777666666665333322210 013344445667788888
Q ss_pred HhhcCchhhhh
Q 000274 1390 SYTTQPLELLN 1400 (1739)
Q Consensus 1390 ~~~T~p~~l~~ 1400 (1739)
|+.-...+|.+
T Consensus 434 ~e~l~~EeL~~ 444 (516)
T KOG2956|consen 434 FERLSAEELLN 444 (516)
T ss_pred HhhcCHHHHHH
Confidence 88877777664
No 39
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.89 E-value=1.9e+02 Score=41.31 Aligned_cols=224 Identities=17% Similarity=0.266 Sum_probs=126.0
Q ss_pred HHHHHHhhhccCCChhhhhHHHHHHHHHHhHHhhcCCCcccccccCCCccchhHHHH---HHHHhhcCchhhhhhcCCCC
Q 000274 919 ALRTLLALCDTEPDSLQDTWNAVLECVSRLEFIMSTPAISATVMLGSNQISKDAVVQ---SLKELAGKPAEQVFVNSVKL 995 (1739)
Q Consensus 919 alkaLL~lA~~~Gn~L~~SW~~IL~~is~Le~l~~~P~~~~~~~~~s~~~s~~~~~~---sl~e~~~~~id~IF~~S~~L 995 (1739)
.+++|++|-.+.|.++-.+|..|++.+.-+-- +..+--++.+.. .++ ++ .+. | =..|
T Consensus 862 sl~~l~silet~ge~ll~~w~sV~eml~s~~d-------------~~~ekek~ivrlgf~~lr-lI---ssD-f--LqSL 921 (1610)
T KOG1848|consen 862 SLEALVSILETVGEHLLHGWQSVFEMLRSATD-------------FGSEKEKKIVRLGFSCLR-LI---SSD-F--LQSL 921 (1610)
T ss_pred HHHHHHHHHhccchhhccccHHHHHHHHHHhh-------------ccchhhhhHHHhhhhhhh-hh---hhc-c--hhcC
Confidence 46888888899999998889999998873310 000000000000 000 00 000 0 1344
Q ss_pred ChhHHHHHHHHHHhhcHHhhhc-------------C---CCccch------HHHHHHHHHhcccccccchHHHHHHHHHH
Q 000274 996 PSDSIVEFFNALCGVSAEELRQ-------------T---PARVFS------LQKLVEISYYNMARIRMVWARIWSVLANH 1053 (1739)
Q Consensus 996 s~eAiv~Fv~ALc~vS~eEl~~-------------s---~pr~Fs------LqKLvEVa~~Nm~Rirl~W~~IW~vl~~h 1053 (1739)
+-+-|.+.|.+|..-|.+--.. + ...+|+ -++.+|..|.-|.-=..-...+|-++-.|
T Consensus 922 p~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~ 1001 (1610)
T KOG1848|consen 922 PTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVH 1001 (1610)
T ss_pred ChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHH
Confidence 5555555555555444331100 0 122333 36777777775542222236789999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHH----HHhh--hhhhcchhhHHhhhhhHHHHH--h---c-------CchHHHHHHH
Q 000274 1054 FISAGSHHDEKIAMYAIDSLRQLSM----KYLE--RAELTNFTFQNDILKPFVVLI--R---N-------SRSETIRSLI 1115 (1739)
Q Consensus 1054 f~~vg~~~n~~va~~AiDsLrQLs~----kfLe--~eEL~~f~fQ~~fLkPFe~im--~---~-------s~~~eVre~I 1115 (1739)
+.+.+-..-..||.-|+..|-|+-. ++-. ++. .++ .++.|+.+-. + . ....|.--.+
T Consensus 1002 L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s----~~w-~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lt 1076 (1610)
T KOG1848|consen 1002 LADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWAS----CCW-LVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLT 1076 (1610)
T ss_pred HHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHH----HHH-HHHHHHhccccccchhhhcchhHhhhhhhhhhhh
Confidence 9998877778999999998887732 2111 100 111 1222332100 0 0 0122233346
Q ss_pred HHHHHHHHHhc------cCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhh
Q 000274 1116 VDCIVQMIKSK------VGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEH 1167 (1739)
Q Consensus 1116 L~cL~qmI~~~------~~~IkSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~ 1167 (1739)
+..|..+-.++ -.++-++|...|+.+..++.+.+..+-..||.+++-++-.+
T Consensus 1077 isgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1077 ISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 66676665554 33445699999999999999888888888998887665443
No 40
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=65.50 E-value=36 Score=38.03 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000274 1253 RPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKE 1332 (1739)
Q Consensus 1253 R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~ 1332 (1739)
.+.||+.|+-+|-++...|+....+ |- -.++..+.. +. ..-+..|+..+.+|..+-+-.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~--~~-------~~l~~~L~D----------~~--~~VR~~al~~Ls~Li~~d~ik 59 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP--YL-------PNLYKCLRD----------ED--PLVRKTALLVLSHLILEDMIK 59 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh--HH-------HHHHHHHCC----------CC--HHHHHHHHHHHHHHHHcCcee
Confidence 3789999999999999999886655 32 233333321 11 245567777777776653333
Q ss_pred HHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 000274 1333 VCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEV 1369 (1739)
Q Consensus 1333 l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~ 1369 (1739)
.. +.++.-++.|+..++++|...+..+|.++...
T Consensus 60 ~k---~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 60 VK---GQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred eh---hhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 32 23335556778889999999999999999887
No 41
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=65.12 E-value=4e+02 Score=34.33 Aligned_cols=98 Identities=11% Similarity=0.305 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHhhhhh-hcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHH
Q 000274 1047 WSVLANHFISAGSHH-DEKIAMYAIDSLRQLSMKYLERAE-LTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIK 1124 (1739)
Q Consensus 1047 W~vl~~hf~~vg~~~-n~~va~~AiDsLrQLs~kfLe~eE-L~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~ 1124 (1739)
=+.+...+..++.+| |+...-|..+++.-| .|+.-... -.--.|...++-||..|+++... |.---+++-+.+|++
T Consensus 69 l~~L~~il~~v~kNPsnP~FnHylFEsi~~l-ir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~-EF~PYvfQIla~Lle 146 (435)
T PF03378_consen 69 LQHLTAILKEVSKNPSNPRFNHYLFESIGAL-IRFVCEADPEAVSQFEEALFPPFQEILQQDVQ-EFIPYVFQILAQLLE 146 (435)
T ss_dssp HHHHHHHHHHHHTS---HHHHHHHHHHHHHH-HHHS-GGGHH---HHHHHHHHHHHHHHHTT-T-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHHH-HHhccCCChhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344555566666665 567777777777644 45532211 11125778899999998876533 455557788889999
Q ss_pred hcc-CCcccCcHHHHHHHHHhhc
Q 000274 1125 SKV-GSIKSGWRSVFMIFTAAAD 1146 (1739)
Q Consensus 1125 ~~~-~~IkSGWk~IF~IL~~aa~ 1146 (1739)
.+. +.+-.....+|..|-.+.-
T Consensus 147 ~~~~~~~p~~y~~L~~~Ll~p~l 169 (435)
T PF03378_consen 147 LRPSSPLPDAYKQLFPPLLSPAL 169 (435)
T ss_dssp HSS--S--TTTGGGHHHHTSGGG
T ss_pred cCCCCCCcHHHHHHHHHHcCcch
Confidence 987 5665566667776666543
No 42
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.44 E-value=4.5e+02 Score=34.62 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHHHh
Q 000274 1312 RETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRDASY 1391 (1739)
Q Consensus 1312 ~eT~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~~~~~f~~~~W~~i~~~~~~~~~ 1391 (1739)
.+|.+-+|.-+..+|+++=..+..+.+.++..|+.-....++.+.--..+-+.++..+-... +..+.+.++-++|.
T Consensus 350 ~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~----~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 350 EETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP----NLRKFLLSLLEMFK 425 (675)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc----cHHHHHHHHHHHHh
Confidence 58999999999999999888887778888888888888888888877777777766652222 56778888888887
Q ss_pred h
Q 000274 1392 T 1392 (1739)
Q Consensus 1392 ~ 1392 (1739)
.
T Consensus 426 e 426 (675)
T KOG0212|consen 426 E 426 (675)
T ss_pred h
Confidence 6
No 43
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=63.72 E-value=1.1e+02 Score=31.01 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000274 1256 VRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEW-FRETSIHSLQLLCNLFNTFYKEVC 1334 (1739)
Q Consensus 1256 VR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~W-l~eT~~~aL~~lv~LF~~yf~~l~ 1334 (1739)
.|++++-.|-.+-..-|.. +...+..++-|++..+. +..| ..-....+|..+++++. +.+-
T Consensus 2 ~R~ggli~Laa~ai~l~~~-----~~~~l~~Il~pVL~~~~----------D~d~rVRy~AcEaL~ni~k~~~---~~~l 63 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-----ISKYLDEILPPVLKCFD----------DQDSRVRYYACEALYNISKVAR---GEIL 63 (97)
T ss_pred chhHHHHHHHHHHHHchHh-----HHHHHHHHHHHHHHHcC----------CCcHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 4788888877776655554 78889999999998764 2223 12233445555555544 3343
Q ss_pred HhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 000274 1335 FMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIE 1368 (1739)
Q Consensus 1335 ~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~ 1368 (1739)
..+.++++.|...+.-+++. .+.|..-|-+|+.
T Consensus 64 ~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 64 PYFNEIFDALCKLSADPDEN-VRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhc
Confidence 45677777777777665555 5666666666653
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=63.00 E-value=60 Score=32.41 Aligned_cols=110 Identities=18% Similarity=0.145 Sum_probs=64.4
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHH
Q 000274 1242 LAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQL 1321 (1739)
Q Consensus 1242 L~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~ 1321 (1739)
+..|.++..+..+++|..|+.+|..+-.. .++.+..+...=.+|.+-.+....+ ......|+..
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i~~l~~~l~~~~-----------~~v~~~a~~~ 72 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAG-----NNDNIQAVVEAGGLPALVQLLKSED-----------EEVVKAALWA 72 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcC-----CHHHHHHHHHCCChHHHHHHHhCCC-----------HHHHHHHHHH
Confidence 44455556677799999999998886553 2566777777333344444432211 1233334444
Q ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 000274 1322 LCNLFNTFYKEVCFML-PPLLSLLLDCAKKPDQSVVSISLGALVHLI 1367 (1739)
Q Consensus 1322 lv~LF~~yf~~l~~~L-~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li 1367 (1739)
+..+-...-.....+. .+++..|..++...+..+.+.++.+|.+|.
T Consensus 73 L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 73 LRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 4443322211222222 346777888888778888888888888763
No 45
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=62.90 E-value=4.5e+02 Score=34.10 Aligned_cols=204 Identities=19% Similarity=0.227 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCccccC
Q 000274 1150 ESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDA 1229 (1739)
Q Consensus 1150 e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~ 1229 (1739)
+.....-|+.+..+++=-+..+..+....+|+.+...|+++...+.=..++..|-.+.-| +.+|.
T Consensus 148 ~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y---~~iP~------------ 212 (464)
T PF11864_consen 148 ESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITY---GDIPS------------ 212 (464)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc---CcCCh------------
Confidence 344555666666666544455556788888999999888776544335566655555443 33332
Q ss_pred ccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhh
Q 000274 1230 TFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDE 1309 (1739)
Q Consensus 1230 ~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~ 1309 (1739)
.---+++..|..+..-. +..+.|-+++-.++.+|.+ . ..+.-|.+.++..... ...
T Consensus 213 ------~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g-------~----~~i~~L~~iL~~~~~~----~~~- 268 (464)
T PF11864_consen 213 ------ESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLG-------H----SAIRTLCDILRSPDPQ----NKR- 268 (464)
T ss_pred ------HHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccH-------H----HHHHHHHHHHcccCcc----ccc-
Confidence 22345566666663322 7888888888888887643 1 1222223333211110 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH-HHcCCCCCHhhHH
Q 000274 1310 WFRETSIHSLQLLCNLFNTFYKE--------VCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLI-EVGGHQFSESDWD 1380 (1739)
Q Consensus 1310 Wl~eT~~~aL~~lv~LF~~yf~~--------l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li-~~~~~~f~~~~W~ 1380 (1739)
-...++|-+.++....-. +.....-++.-|...+...+..+..-...++..|+ .+-+..+.++.|+
T Consensus 269 -----~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~ 343 (464)
T PF11864_consen 269 -----DINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWD 343 (464)
T ss_pred -----cHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCch
Confidence 123444555555443322 22112235566666777888888888889999999 8888889999999
Q ss_pred HHHHHHHHHHhhcCchh
Q 000274 1381 TLLKSIRDASYTTQPLE 1397 (1739)
Q Consensus 1381 ~i~~~~~~~~~~T~p~~ 1397 (1739)
.+++.+.+++....+..
T Consensus 344 ~~~~i~~~~~~~~~~~~ 360 (464)
T PF11864_consen 344 IILDIIEEIFDKIQPFD 360 (464)
T ss_pred HHHHHHHHHHhhccccc
Confidence 99999988655554443
No 46
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=61.30 E-value=4.2e+02 Score=34.17 Aligned_cols=196 Identities=14% Similarity=0.223 Sum_probs=112.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--HHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhc
Q 000274 1049 VLANHFISAGSHHDEKIAMYAIDSLRQLSM--KYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSK 1126 (1739)
Q Consensus 1049 vl~~hf~~vg~~~n~~va~~AiDsLrQLs~--kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~ 1126 (1739)
.+.+.+.++..|....=+.-|+..|-.+.. .|--+++ .|-+-++.-|+ +...+.+.-+|.+.|+-|.+|+.+.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq----~f~~iL~~l~E-vL~d~~~~~~k~laLrvL~~ml~~Q 361 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQ----HFAEILLLLLE-VLSDSEDEIIKKLALRVLREMLTNQ 361 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHH----HHHHHHHHHHH-HHccchhhHHHHHHHHHHHHHHHhc
Confidence 344445555555444444445555543321 1111222 35454444444 4566678889999999999999999
Q ss_pred cCCcccCcH-HHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHH
Q 000274 1127 VGSIKSGWR-SVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRI 1205 (1739)
Q Consensus 1127 ~~~IkSGWk-~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~ 1205 (1739)
...+...=. .|-.+|. ++.|.....++.|=+..-.++..|.+ .-+..-+..|+.. .|..+.+-+|.++..
T Consensus 362 ~~~l~DstE~ai~K~Le-aa~ds~~~v~~~Aeed~~~~las~~P---~~~I~~i~~~Ilt-----~D~~~~~~~iKm~Tk 432 (516)
T KOG2956|consen 362 PARLFDSTEIAICKVLE-AAKDSQDEVMRVAEEDCLTTLASHLP---LQCIVNISPLILT-----ADEPRAVAVIKMLTK 432 (516)
T ss_pred hHhhhchHHHHHHHHHH-HHhCCchhHHHHHHHHHHHHHHhhCc---hhHHHHHhhHHhc-----CcchHHHHHHHHHHH
Confidence 988876444 4444554 55566677888887776666655543 2333333333332 556677777777666
Q ss_pred HHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcc-CCCCH
Q 000274 1206 CEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERG-SKFSA 1277 (1739)
Q Consensus 1206 ~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G-~~f~~ 1277 (1739)
+...+..- ....+---+.=++...+...-..||+.|+=.|-.+...-| ..+.|
T Consensus 433 l~e~l~~E-------------------eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~meP 486 (516)
T KOG2956|consen 433 LFERLSAE-------------------ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEP 486 (516)
T ss_pred HHhhcCHH-------------------HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhh
Confidence 55554321 0001111122333334455677899999998888888777 55544
No 47
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=60.47 E-value=21 Score=35.69 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=50.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhc
Q 000274 1052 NHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSK 1126 (1739)
Q Consensus 1052 ~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~ 1126 (1739)
+++.+.-.+.+..++..|+..|..++... ++....-.+..++.++..++.. .+..++...+.+|.++....
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGN---NDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCc
Confidence 34555556667788888998888776532 2222333445888888888765 47899999999999987654
No 48
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=60.09 E-value=3.4e+02 Score=32.11 Aligned_cols=176 Identities=18% Similarity=0.174 Sum_probs=101.8
Q ss_pred cchHHHHHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCC-----CCHHHHHHHH--HHHHH
Q 000274 1194 RISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSD-----PRPEVRSCAL--EVLFD 1266 (1739)
Q Consensus 1194 nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D-----~R~EVR~~AL--qtLF~ 1266 (1739)
++=..+++.+..+.-|+....+. -.-.|..+|--|+.-+.-+... ..+.|..-+. -.+|.
T Consensus 32 ~lY~~~l~ii~Rll~y~~~~~~R-------------L~Y~W~eLW~aLlsLl~Fl~~~~~~l~~~~~i~~L~~~vv~l~n 98 (237)
T PF08427_consen 32 DLYSLCLGIIHRLLCYLKRSRIR-------------LEYHWSELWRALLSLLRFLTTYESDLKDSPDIFQLAEQVVNLFN 98 (237)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc-------------ccccHHHHHHHHHHHHHHHHhchhhhhcccChHHHHHHHHHHHH
Confidence 34445666666666666543210 0125889998887766666432 1244444433 35788
Q ss_pred HHHhccCCC--CHHHHHHHHHHhHH--HHHHHhhhhccccccc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000274 1267 LLNERGSKF--SASFWESIFHRVLF--PIFDHVRHAGKESLIS---SEDEWFRETSIHSLQLLCNLFNTFYKEVCFMLPP 1339 (1739)
Q Consensus 1267 iL~~~G~~f--~~~~W~~If~~VLf--PIfd~l~~~~~~~~~~---~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~L~~ 1339 (1739)
...+||+.| ++..-+.+|-+++- ++|+.+...-...... +.+.+ +.....++..+..+-.||-..+..
T Consensus 99 ~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sl~nl~~I~~Hf~~ki~~---- 173 (237)
T PF08427_consen 99 FFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMYLRSSTSSSSEYKDS-SDKLTNSLDNLRSIISHFESKIEE---- 173 (237)
T ss_pred HHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHHhhccCCCccccccc-hhHHHHHHHHHHHHHHHHHHHHHH----
Confidence 888999998 77778887777663 5666665322111101 12333 456678888888888888766651
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHH------cCCCCCHhhHHHHHHHHHH
Q 000274 1340 LLSLLLDCAKKPDQSVVSISLGALVHLIEV------GGHQFSESDWDTLLKSIRD 1388 (1739)
Q Consensus 1340 ~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~------~~~~f~~~~W~~i~~~~~~ 1388 (1739)
|.---..=....+++..|....+..|=++ +-+++.|..|.....-+.+
T Consensus 174 -~~~~~~~~~lt~~qV~~VIk~~YdtLsl~~~e~Ld~~ery~E~~~~~~~k~~~r 227 (237)
T PF08427_consen 174 -WSAANKKSNLTPEQVLEVIKQNYDTLSLKLQEGLDQWERYREAPEKSFLKRIAR 227 (237)
T ss_pred -HHhhccCCCCCHHHHHHHHHhCccceecchhhccccccccccCchHHHHHHHHH
Confidence 00000111223466777777776665333 5667888777665544443
No 49
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=59.41 E-value=6.8e+02 Score=35.04 Aligned_cols=168 Identities=14% Similarity=0.185 Sum_probs=97.7
Q ss_pred HHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 000274 1102 LIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVN 1181 (1739)
Q Consensus 1102 im~~s~~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~ 1181 (1739)
++....+.+||+..+.|+.|+|-+.|+.++.--+.++-+|.---+.+ -.--.|+..+..|...-
T Consensus 577 L~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE--iTRl~AvkAlt~Ia~S~-------------- 640 (1233)
T KOG1824|consen 577 LKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE--ITRLTAVKALTLIAMSP-------------- 640 (1233)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch--hHHHHHHHHHHHHHhcc--------------
Confidence 34455788999999999999999999999988888888776433322 12223444444333211
Q ss_pred HHHHHHhccCcccchHHHHH--hHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHH
Q 000274 1182 CLIRFANNKTSHRISLKAIA--LLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSC 1259 (1739)
Q Consensus 1182 cL~~F~~q~~d~nISL~AI~--lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ 1259 (1739)
..|.+..+. .+..+++++.+ + -...|..
T Consensus 641 -----------l~i~l~~~l~~il~~l~~flrK--------------------------------------~-~r~lr~~ 670 (1233)
T KOG1824|consen 641 -----------LDIDLSPVLTEILPELASFLRK--------------------------------------N-QRALRLA 670 (1233)
T ss_pred -----------ceeehhhhHHHHHHHHHHHHHH--------------------------------------H-HHHHHHH
Confidence 122222211 12222222221 1 1236677
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH----H
Q 000274 1260 ALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVC----F 1335 (1739)
Q Consensus 1260 ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~----~ 1335 (1739)
.+.++-.++..||..++.+..+.++.++. |++..-.. ..-.+|+..++.++..+-..+. +
T Consensus 671 ~l~a~~~L~~~~~~~~~~~~~e~vL~el~-~Lisesdl---------------hvt~~a~~~L~tl~~~~ps~l~~~~~~ 734 (1233)
T KOG1824|consen 671 TLTALDKLVKNYSDSIPAELLEAVLVELP-PLISESDL---------------HVTQLAVAFLTTLAIIQPSSLLKISNP 734 (1233)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHhh-hhhhHHHH---------------HHHHHHHHHHHHHHhcccHHHHHHhhh
Confidence 77778888889999999998888886654 54442211 1123455666666665555443 3
Q ss_pred hHHHHHHHHHHhhcCC
Q 000274 1336 MLPPLLSLLLDCAKKP 1351 (1739)
Q Consensus 1336 ~L~~~l~lL~~cI~q~ 1351 (1739)
.|+.++.++.+=.-|.
T Consensus 735 iL~~ii~ll~Spllqg 750 (1233)
T KOG1824|consen 735 ILDEIIRLLRSPLLQG 750 (1233)
T ss_pred hHHHHHHHhhCccccc
Confidence 5666666655444443
No 50
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=55.31 E-value=6.4e+02 Score=33.48 Aligned_cols=215 Identities=15% Similarity=0.177 Sum_probs=122.5
Q ss_pred cCchHHHHHHHHHHHHHHHHhcc-CCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 000274 1105 NSRSETIRSLIVDCIVQMIKSKV-GSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCL 1183 (1739)
Q Consensus 1105 ~s~~~eVre~IL~cL~qmI~~~~-~~IkSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL 1183 (1739)
+.++..+|+.+..|+..|+-... ...-.-=+-++..++.+......... +... .+++.....- ..=...++.|
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa---~~~a-g~v~g~~i~~--~~~~~~l~~l 179 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAA---YGLA-GLVNGLGIES--LKEFGFLDNL 179 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhh---HHHH-HHHcCcHHhh--hhhhhHHHHH
Confidence 46788899999999988764422 22222344556666644433222222 2222 1222221111 1112356667
Q ss_pred HHHHhccCcc-cchHHHHHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHH
Q 000274 1184 IRFANNKTSH-RISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALE 1262 (1739)
Q Consensus 1184 ~~F~~q~~d~-nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALq 1262 (1739)
.++.+.+..- |.=..++.+-. -...-|. ..+-+-.|+|-.+-....|.-.+||..|..
T Consensus 180 ~~ai~dk~~~~~re~~~~a~~~---~~~~Lg~------------------~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~ 238 (569)
T KOG1242|consen 180 SKAIIDKKSALNREAALLAFEA---AQGNLGP------------------PFEPYIVPILPSILTNFGDKINKVREAAVE 238 (569)
T ss_pred HHHhcccchhhcHHHHHHHHHH---HHHhcCC------------------CCCchHHhhHHHHHHHhhccchhhhHHHHH
Confidence 7777655431 11011111111 1111010 012355666666666777888999998877
Q ss_pred HHHHHHH---hccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000274 1263 VLFDLLN---ERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVCFMLPP 1339 (1739)
Q Consensus 1263 tLF~iL~---~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~L~~ 1339 (1739)
..-.++. .||. ..+|.|++..+.. ..| .|...+++++.-+--.==.++...+++
T Consensus 239 a~kai~~~~~~~aV-----------K~llpsll~~l~~----------~kW--rtK~aslellg~m~~~ap~qLs~~lp~ 295 (569)
T KOG1242|consen 239 AAKAIMRCLSAYAV-----------KLLLPSLLGSLLE----------AKW--RTKMASLELLGAMADCAPKQLSLCLPD 295 (569)
T ss_pred HHHHHHHhcCcchh-----------hHhhhhhHHHHHH----------Hhh--hhHHHHHHHHHHHHHhchHHHHHHHhH
Confidence 7665555 3443 2456677777642 268 777777777774443333456677888
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 000274 1340 LLSLLLDCAKKPDQSVVSISLGALVHLIEV 1369 (1739)
Q Consensus 1340 ~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~ 1369 (1739)
++--|.+-++....++.+.|+.|+.++-..
T Consensus 296 iiP~lsevl~DT~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 296 LIPVLSEVLWDTKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred hhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 888899999999999999999998877544
No 51
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=52.80 E-value=23 Score=27.91 Aligned_cols=28 Identities=43% Similarity=0.526 Sum_probs=21.4
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000274 1242 LAGLSDLTSDPRPEVRSCALEVLFDLLN 1269 (1739)
Q Consensus 1242 L~~Ls~l~~D~R~EVR~~ALqtLF~iL~ 1269 (1739)
+-.|..+..|+.++||..|+..|-++.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3445567789999999999999988764
No 52
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=52.02 E-value=88 Score=38.43 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHH-HHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 000274 1252 PRPEVRSCALEVLFD-LLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFY 1330 (1739)
Q Consensus 1252 ~R~EVR~~ALqtLF~-iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf 1330 (1739)
..|+.|..-+=.++. ++...|..+.+ .-..|+..|.-|.++-+.... .+.-+-+..=...+-.+-.++|
T Consensus 83 ~~p~~r~~evL~l~~~ii~kl~~~~~~-~v~~I~~~vf~~Tl~MI~~d~---------~~yPe~r~~ff~LL~~i~~~~f 152 (319)
T PF08767_consen 83 SVPDAREPEVLSLMATIINKLGELIQP-QVPQILEAVFECTLPMINKDF---------EEYPEHRVNFFKLLRAINEHCF 152 (319)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHGGGCCC-CHHHHHHHHHHHHHHHHSSTS---------SSSHHHHHHHHHHHHHHHHHHT
T ss_pred CCccccChhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhhh---------hhChHHHHHHHHHHHHHHHHhH
Confidence 456666654444444 45566766654 345677777777777764321 1123445555555666666677
Q ss_pred HHHHH----hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCC
Q 000274 1331 KEVCF----MLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGH 1372 (1739)
Q Consensus 1331 ~~l~~----~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~~~~ 1372 (1739)
+.+.. .+..+++-+.|.++.++..++..|..++..|+.....
T Consensus 153 ~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 153 PALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 77764 3667778888889999999999999999999988433
No 53
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=49.59 E-value=2.9e+02 Score=30.39 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCHH----HHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 000274 1254 PEVRSCALEVLFDLLNERGSKFSAS----FWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTF 1329 (1739)
Q Consensus 1254 ~EVR~~ALqtLF~iL~~~G~~f~~~----~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~y 1329 (1739)
...|.-|++.+-.+|..+|..|... .-..+++.-|.|.+-...... . ......+++.+..++.+|
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~---------~--~~i~~~slri~~~l~~~~ 104 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS---------D--FPIFSRSLRIFLTLLSRF 104 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh---------h--hHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999988632 234445455555444332211 1 466678888888888887
Q ss_pred HHHHHHhHHHHHHHHHH
Q 000274 1330 YKEVCFMLPPLLSLLLD 1346 (1739)
Q Consensus 1330 f~~l~~~L~~~l~lL~~ 1346 (1739)
-..+...+.-++..+..
T Consensus 105 ~~~Lk~ele~~l~~i~~ 121 (168)
T PF12783_consen 105 RSHLKLELEVFLSHIIL 121 (168)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77776656666655554
No 54
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=47.81 E-value=89 Score=31.68 Aligned_cols=73 Identities=19% Similarity=0.338 Sum_probs=54.6
Q ss_pred hHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q 000274 1091 FQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVIL 1165 (1739)
Q Consensus 1091 fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~ 1165 (1739)
+-+.+++|....+. ..+..||....++|.++.....+.+-.-..-||..|.....|++++ |+.|=+.+..++.
T Consensus 24 ~l~~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 24 YLDEILPPVLKCFD-DQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhc
Confidence 44677888776554 4578899999999999998877766557788888888888888766 5555566655443
No 55
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=47.59 E-value=1.7e+03 Score=36.08 Aligned_cols=220 Identities=15% Similarity=0.217 Sum_probs=113.1
Q ss_pred HhhcCchhhhhhcCCCCChhHHHHHHHHHHhh-cHHhhhcCCCccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHh
Q 000274 979 ELAGKPAEQVFVNSVKLPSDSIVEFFNALCGV-SAEELRQTPARVFSLQKLVEISYYNMARIRMVWARIWSVLANHFISA 1057 (1739)
Q Consensus 979 e~~~~~id~IF~~S~~Ls~eAiv~Fv~ALc~v-S~eEl~~s~pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~~hf~~v 1057 (1739)
++.++-+..||+...+ +.++..-..++..- +..-.....--.|.+.||.|+...-..+..+. =..+...|..|
T Consensus 543 eIfe~~~p~iferi~~--n~~l~~i~n~~l~n~~ts~~fa~ill~fll~rl~e~gs~~~~~s~l~----LrLFkl~F~sv 616 (3550)
T KOG0889|consen 543 EIFETNSPFIFERILK--NNALFHIANTLLSNESTSVNFANILLSFLLSRLKELGSNDLLDSKLL----LRLFKLIFGSV 616 (3550)
T ss_pred HHHHHhhHHHHHHHhc--cCcHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHccCccccchhh----Hhhhhhhhhhh
Confidence 4455567778877766 55555555554431 11000000112478888888764423332221 12344556666
Q ss_pred cCCCC--HHHHHHHHHHHHHHHHHHhhh-hhhcchhhH--HhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCc--
Q 000274 1058 GSHHD--EKIAMYAIDSLRQLSMKYLER-AELTNFTFQ--NDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSI-- 1130 (1739)
Q Consensus 1058 g~~~n--~~va~~AiDsLrQLs~kfLe~-eEL~~f~fQ--~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~I-- 1130 (1739)
+..+. +.+...-+.-+-.-+|+.... +|--|| || +.+++.+ .+-.....-+.++-||..+++..-+-+
T Consensus 617 ~~f~~~nervl~phv~~Ii~~smela~~a~eplnY-f~LLraLFRsi----gGg~~d~ly~e~lplL~~lLe~ln~l~~~ 691 (3550)
T KOG0889|consen 617 SKFPSENERVLRPHVHDIISTSMELATTAPEPLNY-FQLLRALFRSI----GGGAFDSLYREVLPLLPNLLEILNHLLSS 691 (3550)
T ss_pred hcccccchhhcccchhHHHHHHHHHHhcCCcchhH-HHHHHHHHHHh----hccchHhHHHHHHHHHHHHHHHHHHHhhc
Confidence 55543 233222232222234555433 222222 33 3343333 222222222333333333333322211
Q ss_pred -cc-CcHHHHH--HHHHhhc-------------------chhHHHHHHHHHHHHHHHh----hhhhhhhhhhHHHHHHHH
Q 000274 1131 -KS-GWRSVFM--IFTAAAD-------------------DEVESIVESAFENVEQVIL----EHFDQVVGDCFMDCVNCL 1183 (1739)
Q Consensus 1131 -kS-GWk~IF~--IL~~aa~-------------------d~~e~iV~~aF~~l~~I~~----d~~~~l~~~~f~dlI~cL 1183 (1739)
++ |=|-+|- .|+.+++ .....+|.+|+.++++.++ ||+..+....-.+++.+|
T Consensus 692 ~~s~~mkdLfvELclTvPvRLS~Llpylp~LM~PLv~aLkgs~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaL 771 (3550)
T KOG0889|consen 692 FHSQGMKDLFVELCLTLPVRLSSLLPYLPLLMKPLVFALKGSPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQAL 771 (3550)
T ss_pred cCccchHHHHHHHHHhhhHHHHHhhhhhhhhhhHHHHHhcCCHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHH
Confidence 22 5566664 3333333 2357899999999999887 466666667788888888
Q ss_pred HHHHhccCcccchHHHHHhHHHHHHH
Q 000274 1184 IRFANNKTSHRISLKAIALLRICEDR 1209 (1739)
Q Consensus 1184 ~~F~~q~~d~nISL~AI~lLw~~~d~ 1209 (1739)
-.-.+..-+-++|-.|+..|...+-+
T Consensus 772 w~~l~~~~~~s~s~~a~rILGKlgG~ 797 (3550)
T KOG0889|consen 772 WSHLRPVPNYSYSHRALRILGKLGGR 797 (3550)
T ss_pred HHhccCCCCchHHHHHHHHHHhhcCc
Confidence 88776644667888999888776543
No 56
>PRK09687 putative lyase; Provisional
Probab=45.95 E-value=2.1e+02 Score=34.46 Aligned_cols=161 Identities=14% Similarity=0.045 Sum_probs=89.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCccc
Q 000274 1053 HFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKS 1132 (1739)
Q Consensus 1053 hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkS 1132 (1739)
.+.....+++..+|..|++.|.||...- .-|...+..+..++.+..+.+||...+..|.++- . .. ..
T Consensus 58 ~l~~ll~~~d~~vR~~A~~aLg~lg~~~---------~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~-~-~~--~~ 124 (280)
T PRK09687 58 LAIELCSSKNPIERDIGADILSQLGMAK---------RCQDNVFNILNNLALEDKSACVRASAINATGHRC-K-KN--PL 124 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCc---------cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc-c-cc--cc
Confidence 3445567889999999999999875311 0144556666666667788999999999998852 1 11 11
Q ss_pred CcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhc
Q 000274 1133 GWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAE 1212 (1739)
Q Consensus 1133 GWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~ 1212 (1739)
.+......+..+..|++..+=..+-..+. .+.. .+.|..|....+. .+..+-..|+.-|-.+ ..
T Consensus 125 ~~~~a~~~l~~~~~D~~~~VR~~a~~aLg--------~~~~---~~ai~~L~~~L~d-~~~~VR~~A~~aLg~~----~~ 188 (280)
T PRK09687 125 YSPKIVEQSQITAFDKSTNVRFAVAFALS--------VIND---EAAIPLLINLLKD-PNGDVRNWAAFALNSN----KY 188 (280)
T ss_pred cchHHHHHHHHHhhCCCHHHHHHHHHHHh--------ccCC---HHHHHHHHHHhcC-CCHHHHHHHHHHHhcC----CC
Confidence 23556666666666655443322222221 1211 2334444444442 3334444444333221 00
Q ss_pred ccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 000274 1213 GLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFD 1266 (1739)
Q Consensus 1213 ~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~ 1266 (1739)
+ . . .....|.....|+..+||..|+..|-+
T Consensus 189 ----~------------~-----~---~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 189 ----D------------N-----P---DIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred ----C------------C-----H---HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 0 0 0 112334444589999999999998855
No 57
>PTZ00429 beta-adaptin; Provisional
Probab=44.73 E-value=1e+03 Score=32.88 Aligned_cols=265 Identities=12% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhh----hhHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 000274 1050 LANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDIL----KPFVVLIRNSRSETIRSLIVDCIVQMIKS 1125 (1739)
Q Consensus 1050 l~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fL----kPFe~im~~s~~~eVre~IL~cL~qmI~~ 1125 (1739)
+-+.+...-.|.|..|.+-|+..+-.+.... +-..++..+ .|+..+ .+.++++|-.+|+.|..+++.
T Consensus 257 il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-------~~~~~~~~~~rl~~pLv~L--~ss~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 257 LLTRVLPRMSHQNPAVVMGAIKVVANLASRC-------SQELIERCTVRVNTALLTL--SRRDAETQYIVCKNIHALLVI 327 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-------CHHHHHHHHHHHHHHHHHh--hCCCccHHHHHHHHHHHHHHH
Q ss_pred ccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHH
Q 000274 1126 KVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRI 1205 (1739)
Q Consensus 1126 ~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~ 1205 (1739)
+..-+..- +.+|-.-..|+.- +-....+++-.+++ .++..+++.=|.+|+. ..|..+.-.||.-+..
T Consensus 328 ~P~lf~~~----~~~Ff~~~~Dp~y-IK~~KLeIL~~Lan-------e~Nv~~IL~EL~eYa~-d~D~ef~r~aIrAIg~ 394 (746)
T PTZ00429 328 FPNLLRTN----LDSFYVRYSDPPF-VKLEKLRLLLKLVT-------PSVAPEILKELAEYAS-GVDMVFVVEVVRAIAS 394 (746)
T ss_pred CHHHHHHH----HHhhhcccCCcHH-HHHHHHHHHHHHcC-------cccHHHHHHHHHHHhh-cCCHHHHHHHHHHHHH
Q ss_pred HHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 000274 1206 CEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFH 1285 (1739)
Q Consensus 1206 ~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~ 1285 (1739)
|+-++. ...-.++..|.++. +.+.++-..++.++.+++..|-..+ ++.
T Consensus 395 lA~k~~------------------------~~a~~cV~~Ll~ll-~~~~~~v~e~i~vik~IlrkyP~~~-------il~ 442 (746)
T PTZ00429 395 LAIKVD------------------------SVAPDCANLLLQIV-DRRPELLPQVVTAAKDIVRKYPELL-------MLD 442 (746)
T ss_pred HHHhCh------------------------HHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHCccHH-------HHH
Q ss_pred HhHHHH-HHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 000274 1286 RVLFPI-FDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALV 1364 (1739)
Q Consensus 1286 ~VLfPI-fd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~ 1364 (1739)
.++-.+ .+.+... .|-..++-++.+|-+.+.. .++++..++.-+..++..+-.....+..
T Consensus 443 ~L~~~~~~~~i~e~------------------~AKaaiiWILGEy~~~I~~-a~~~L~~~i~~f~~E~~~VqlqlLta~v 503 (746)
T PTZ00429 443 TLVTDYGADEVVEE------------------EAKVSLLWMLGEYCDFIEN-GKDIIQRFIDTIMEHEQRVQLAILSAAV 503 (746)
T ss_pred HHHHhhcccccccH------------------HHHHHHHHHHHhhHhhHhh-HHHHHHHHHhhhccCCHHHHHHHHHHHH
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHH
Q 000274 1365 HLIEVGGHQFSESDWDTLLKSIRD 1388 (1739)
Q Consensus 1365 ~Li~~~~~~f~~~~W~~i~~~~~~ 1388 (1739)
.+....-+.. ...+..+....-+
T Consensus 504 Klfl~~p~~~-~~~l~~vL~~~t~ 526 (746)
T PTZ00429 504 KMFLRDPQGM-EPQLNRVLETVTT 526 (746)
T ss_pred HHHhcCcHHH-HHHHHHHHHHHHh
No 58
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.87 E-value=4e+02 Score=35.07 Aligned_cols=182 Identities=15% Similarity=0.236 Sum_probs=96.1
Q ss_pred HHHHHhhhhhhhhhhhHHHHHH-HHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhch
Q 000274 1160 VEQVILEHFDQVVGDCFMDCVN-CLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFW 1238 (1739)
Q Consensus 1160 l~~I~~d~~~~l~~~~f~dlI~-cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW 1238 (1739)
++.++++++..-..+....+|. ...+|+..... |. ..=+++-..+-.++-|.. .....+.+|
T Consensus 24 lEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~-n~--rkGgLiGlAA~~iaLg~~--------------~~~Y~~~iv 86 (675)
T KOG0212|consen 24 LEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHA-NM--RKGGLIGLAAVAIALGIK--------------DAGYLEKIV 86 (675)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHhccCccc-cc--ccchHHHHHHHHHHhccc--------------cHHHHHHhh
Confidence 4556666655444466677777 66777764332 11 011111111222222210 001346799
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhHHHHHHHhhhhcccccc-------------
Q 000274 1239 FPMLAGLSDLTSDPRPEVRSCALEVLFDLLNER-GSKFSASFWESIFHRVLFPIFDHVRHAGKESLI------------- 1304 (1739)
Q Consensus 1239 ~pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~-G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~------------- 1304 (1739)
.|++.+| .|++..||--|++.|+++-+.. |..+.. .+.|| -.+..+....+.+..
T Consensus 87 ~Pv~~cf----~D~d~~vRyyACEsLYNiaKv~k~~v~~~--Fn~iF-----dvL~klsaDsd~~V~~~aeLLdRLikdI 155 (675)
T KOG0212|consen 87 PPVLNCF----SDQDSQVRYYACESLYNIAKVAKGEVLVY--FNEIF-----DVLCKLSADSDQNVRGGAELLDRLIKDI 155 (675)
T ss_pred HHHHHhc----cCccceeeeHhHHHHHHHHHHhccCcccc--hHHHH-----HHHHHHhcCCccccccHHHHHHHHHHHh
Confidence 9999876 5678899999999999999955 444432 34444 222333222221110
Q ss_pred -cchh-hh-H------HHHHHHHHHHHHHHHH-HHHHHHH--------HhHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 000274 1305 -SSED-EW-F------RETSIHSLQLLCNLFN-TFYKEVC--------FMLPPLLSLLLDCAKKPDQSVVSISLGALVHL 1366 (1739)
Q Consensus 1305 -~~~~-~W-l------~eT~~~aL~~lv~LF~-~yf~~l~--------~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~L 1366 (1739)
.+.. .. + -.-.+-+..-+.+.|. .+...|. ..++.+++-|......+++.+-+..-.|+-++
T Consensus 156 Vte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~f 235 (675)
T KOG0212|consen 156 VTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEF 235 (675)
T ss_pred ccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 0000 00 0 0011111122222221 1222221 34788888899999999999999999999888
Q ss_pred HHH
Q 000274 1367 IEV 1369 (1739)
Q Consensus 1367 i~~ 1369 (1739)
+..
T Consensus 236 L~e 238 (675)
T KOG0212|consen 236 LAE 238 (675)
T ss_pred HHH
Confidence 876
No 59
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.72 E-value=1.2e+03 Score=32.94 Aligned_cols=151 Identities=18% Similarity=0.237 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhh----------hhhhhhhhHH
Q 000274 1108 SETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEH----------FDQVVGDCFM 1177 (1739)
Q Consensus 1108 ~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~----------~~~l~~~~f~ 1177 (1739)
..-+|-+.-.|++.||.+-.. +-|.-++.....--+..+..-+--|.=|+.++++.| +..+....|.
T Consensus 102 p~~iRvql~~~l~~Ii~~D~p---~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP 178 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKADYP---EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFP 178 (1010)
T ss_pred chHHHHHHHHHHHHHHhcCCc---ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 334777777888888866443 789999988877666666666777777777776543 4555667888
Q ss_pred HHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhc---ccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhc-----
Q 000274 1178 DCVNCLIRFANNKTSHRISLKAIALLRICEDRLAE---GLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLT----- 1249 (1739)
Q Consensus 1178 dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~---~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~----- 1249 (1739)
++.+-...+..+. |..+..+++.|...... ..+|..- .....-..|+-|+..+.+--
T Consensus 179 ~il~~~~~ll~~~-----s~~s~el~klIlKifks~~~~~LP~~L----------~~~~~f~~W~~l~l~i~~rpvP~E~ 243 (1010)
T KOG1991|consen 179 DILQIFNGLLSQE-----SYQSVELQKLILKIFKSLIYYELPLEL----------SAPETFTSWMELFLSILNRPVPVEV 243 (1010)
T ss_pred HHHHHHHhhcccc-----chHHHHHHHHHHHHHHHHHHHhCCHHh----------hCchhHHHHHHHHHHHHcCCCChhc
Confidence 8877777777665 56677776665542221 1112100 00112346888887776552
Q ss_pred CCCCHHHH---------HHHHHHHHHHHHhccCCCC
Q 000274 1250 SDPRPEVR---------SCALEVLFDLLNERGSKFS 1276 (1739)
Q Consensus 1250 ~D~R~EVR---------~~ALqtLF~iL~~~G~~f~ 1276 (1739)
+.-++|+| +=|+..|.|++..||+...
T Consensus 244 l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~ 279 (1010)
T KOG1991|consen 244 LSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSL 279 (1010)
T ss_pred ccCChhhcccccchhhHHHHHHHHHHHHHHhCCccc
Confidence 22355655 5699999999999998663
No 60
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=38.97 E-value=6.2e+02 Score=28.61 Aligned_cols=152 Identities=14% Similarity=0.218 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHH
Q 000274 1178 DCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVR 1257 (1739)
Q Consensus 1178 dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR 1257 (1739)
-+|.||.. ++++-+.+..|+.+...++...+. ....-|.-|..+...+.. ..+
T Consensus 7 lLIsCL~~-------q~~k~s~~KiL~~iVs~Va~~v~~----------------~~~~~W~eL~d~Ils~~~-~e~--- 59 (174)
T PF04510_consen 7 LLISCLTM-------QETKESDFKILRRIVSHVAYEVFD----------------LQEGGWDELSDCILSLSE-NEP--- 59 (174)
T ss_pred HHHHHHHh-------hcccHhHHHHHHHHHHHHHHHHHh----------------cCCCCchhHHHHHHHhhc-cch---
Confidence 46777765 566767778888888888754210 012335544444444442 112
Q ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHH------
Q 000274 1258 SCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYK------ 1331 (1739)
Q Consensus 1258 ~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~------ 1331 (1739)
.+|..+|.++=..+ ..+|-...+.. |+|-+.....+.+. .+...| ++|+.+.+..+-|..+
T Consensus 60 ~kA~~IF~~L~~~l----~~efl~~~~~~-L~~~~~~~L~~p~~---~d~~~W-----~LAl~~a~~~~Iql~e~~~~~~ 126 (174)
T PF04510_consen 60 VKAFHIFICLPMPL----YGEFLIPFMEN-LLPEISKVLLPPEE---VDVEDW-----VLALTGAVCMAIQLLESSMRVD 126 (174)
T ss_pred HHHHHHHHhCCchh----hhhHHHHHHHH-HHHHHHHHcCCchh---ccHHHH-----HHHHHHHHHHHHHHhccccHHH
Confidence 45666665532111 22333334433 44544444332221 134567 5888888888877544
Q ss_pred HHHHhHHHHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHH
Q 000274 1332 EVCFMLPPLLSLLLDCAKKPDQ-SVVSISLGALVHLIEV 1369 (1739)
Q Consensus 1332 ~l~~~L~~~l~lL~~cI~q~ne-~ia~ig~~cL~~Li~~ 1369 (1739)
.+..+++.+++-+...+..+.| +..+=|..-++.++..
T Consensus 127 ~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 127 LVKELLPKMVKSVKELVERGMEVGFLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 4445566666666777778998 8999898888888765
No 61
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=37.89 E-value=1.7e+02 Score=31.89 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=41.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhh--hhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHH
Q 000274 1058 GSHHDEKIAMYAIDSLRQLSMKYLE--RAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQM 1122 (1739)
Q Consensus 1058 g~~~n~~va~~AiDsLrQLs~kfLe--~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qm 1122 (1739)
-.|+|+.+..+|+.-|.-+..---. +.|.+ .++|+..+..++....+.+||+.+++.|.+.
T Consensus 46 l~~~n~~v~l~AL~LLe~~vkNCG~~fh~eva----sk~Fl~eL~kl~~~~~~~~Vk~kil~li~~W 108 (144)
T cd03568 46 LNHKDPNVQLRALTLLDACAENCGKRFHQEVA----SRDFTQELKKLINDRVHPTVKEKLREVVKQW 108 (144)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHh----hHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 3578899999998777655321110 11222 2677888887777668899999999988873
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.18 E-value=8.8e+02 Score=33.38 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=52.6
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHhccCCccc-CcHHHHHHHHH--------------hhcchhHHHHHHHHHHHHHH
Q 000274 1099 FVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKS-GWRSVFMIFTA--------------AADDEVESIVESAFENVEQV 1163 (1739)
Q Consensus 1099 Fe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkS-GWk~IF~IL~~--------------aa~d~~e~iV~~aF~~l~~I 1163 (1739)
-..||.-..+...|...+.||..++.++..|||- |-.++..+++. +-+|++.+|-+.|++..-.+
T Consensus 298 V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~l 377 (866)
T KOG1062|consen 298 VRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYAL 377 (866)
T ss_pred HHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3456766778889999999999999999999996 77777776653 22367788888898877666
Q ss_pred Hhh
Q 000274 1164 ILE 1166 (1739)
Q Consensus 1164 ~~d 1166 (1739)
+++
T Consensus 378 vn~ 380 (866)
T KOG1062|consen 378 VNE 380 (866)
T ss_pred hcc
Confidence 553
No 63
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=35.88 E-value=1e+03 Score=30.26 Aligned_cols=133 Identities=24% Similarity=0.314 Sum_probs=82.3
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHh--------ccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHH
Q 000274 1242 LAGLSDLTSDPRPEVRSCALEVLFDLLNE--------RGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRE 1313 (1739)
Q Consensus 1242 L~~Ls~l~~D~R~EVR~~ALqtLF~iL~~--------~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~e 1313 (1739)
+..|.++..| +++...|-..|-=++.. ++.....=+=+.+|..++-++++..+..... ..+
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~---------~k~ 341 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE---------IKS 341 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh---------hHH
Confidence 4444455554 56665555543333332 2222233233478877777776666543221 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH
Q 000274 1314 TSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRD 1388 (1739)
Q Consensus 1314 T~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~~~~~f~~~~W~~i~~~~~~ 1388 (1739)
....||.++.+=.. ...+..-++.++-+|+.++.-++..+-..+..+|..++..+.+-+. +|-+.++..+.+
T Consensus 342 ~yL~ALs~ll~~vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~-~hl~sLI~~LL~ 413 (415)
T PF12460_consen 342 NYLTALSHLLKNVP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS-EHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH-HHHHHHHHHHHh
Confidence 44566666665333 3455666888899999999999999999999999999998844444 466666665544
No 64
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=35.43 E-value=3.8e+02 Score=32.46 Aligned_cols=79 Identities=13% Similarity=0.208 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhcc
Q 000274 1048 SVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKV 1127 (1739)
Q Consensus 1048 ~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~ 1127 (1739)
..+.....-...|++..||..|+.+|.-.++= ++ +.-.+++.-|...+.. .+.+||-..+++|..++..+|
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll--d~------~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLL--DK------ELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh--Ch------HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcC
Confidence 34555555667788889999999998765542 11 2335566667776644 488999999999999999999
Q ss_pred CCcccCcH
Q 000274 1128 GSIKSGWR 1135 (1739)
Q Consensus 1128 ~~IkSGWk 1135 (1739)
..+-..+.
T Consensus 97 ~~~~~~~~ 104 (298)
T PF12719_consen 97 IDIFDSES 104 (298)
T ss_pred chhccchh
Confidence 77655433
No 65
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.28 E-value=1.4e+03 Score=31.48 Aligned_cols=222 Identities=17% Similarity=0.227 Sum_probs=117.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHH
Q 000274 1060 HHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFM 1139 (1739)
Q Consensus 1060 ~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF~ 1139 (1739)
.+|+.|.+.+...+-++|-+- + -..+.+|+..+|..+ .++|.++|++|..|.-.+..- +.+=|.
T Consensus 298 S~n~sVVmA~aql~y~lAP~~----~------~~~i~kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~l----F~P~lK 361 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKN----Q------VTKIAKALVRLLRSN--REVQYVVLQNIATISIKRPTL----FEPHLK 361 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHH----H------HHHHHHHHHHHHhcC--CcchhhhHHHHHHHHhcchhh----hhhhhh
Confidence 577888888877777776432 1 145678888888754 468999999999987664221 111111
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCC
Q 000274 1140 IFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGD 1219 (1739)
Q Consensus 1140 IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~ 1219 (1739)
-|-.-+.|+. .+-..=.+++..+.++-.- ..+..=|..|.+.... ...-.||.-+-.|+..+....
T Consensus 362 sFfv~ssDp~-~vk~lKleiLs~La~esni-------~~ILrE~q~YI~s~d~-~faa~aV~AiGrCA~~~~sv~----- 427 (968)
T KOG1060|consen 362 SFFVRSSDPT-QVKILKLEILSNLANESNI-------SEILRELQTYIKSSDR-SFAAAAVKAIGRCASRIGSVT----- 427 (968)
T ss_pred ceEeecCCHH-HHHHHHHHHHHHHhhhccH-------HHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHhhCchh-----
Confidence 2222223332 1111223444444433221 2222222334443332 355667777777877764320
Q ss_pred CCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhc
Q 000274 1220 LKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAG 1299 (1739)
Q Consensus 1220 ~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~ 1299 (1739)
-..|.+|..+......-|=..|..++-.+|.... ..-.+.|++ |+.+++.+.-+.
T Consensus 428 -------------------~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p----~~h~~ii~~--La~lldti~vp~ 482 (968)
T KOG1060|consen 428 -------------------DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP----AEHLEILFQ--LARLLDTILVPA 482 (968)
T ss_pred -------------------hHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh----HHHHHHHHH--HHHHhhhhhhhh
Confidence 1246777777766677788888888888776432 112222222 444444443211
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChh
Q 000274 1300 KESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQS 1354 (1739)
Q Consensus 1300 ~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~cI~q~ne~ 1354 (1739)
....-.|| +..|-..+-.|+|+++..+.+-+..+.+.
T Consensus 483 ----ARA~IiWL--------------ige~~e~vpri~PDVLR~laksFs~E~~e 519 (968)
T KOG1060|consen 483 ----ARAGIIWL--------------IGEYCEIVPRIAPDVLRKLAKSFSDEGDE 519 (968)
T ss_pred ----hhceeeee--------------ehhhhhhcchhchHHHHHHHHhhccccch
Confidence 11234684 33444444455666666666555555443
No 66
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=33.15 E-value=65 Score=28.44 Aligned_cols=53 Identities=25% Similarity=0.147 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 000274 1314 TSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHL 1366 (1739)
Q Consensus 1314 T~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~L 1366 (1739)
....|+..++.+-....+.+.+.+++++..|..+++.+++.+-..++.+|.+|
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 34456666666555566667778999999999999988898888888887654
No 67
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=33.06 E-value=2.3e+02 Score=33.85 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHHHHHHhhcCCChhHHHH-HHHHHHHHHH--HHHHHhHHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 000274 391 NFHFIDSIKAYLSYALLRASVSQSSVIFQY-ATGIFSVLLL--RFRESLKGEIGVFFPLIVLRSLDGSDNNQKTSVLRMI 467 (1739)
Q Consensus 391 ~~~f~~~ik~~Lc~~Llrn~~S~~~~vF~l-sl~If~~Ll~--~~r~~Lk~Eievfl~~i~l~~Le~s~~~qK~~~Le~l 467 (1739)
+.+....||.|++..+-.....+..+-.++ .+|++..|-. .++..+..-+.-|++ +|.+.+..-|..+|++|
T Consensus 84 ~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~-----LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 84 NDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLS-----LLSSGSEKTKVQVLKVL 158 (254)
T ss_pred ChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHH-----HHHcCChHHHHHHHHHH
Confidence 345566788887766544433332222333 4788777633 566666665655544 44455555668899999
Q ss_pred HHHhcChhHHHHHHHh
Q 000274 468 DKVCKDPQMLVDVYVN 483 (1739)
Q Consensus 468 ~~l~~dp~~lvdiyvN 483 (1739)
..+..+|....++.-.
T Consensus 159 ~nLS~np~~~~~Ll~~ 174 (254)
T PF04826_consen 159 VNLSENPDMTRELLSA 174 (254)
T ss_pred HHhccCHHHHHHHHhc
Confidence 9999999998888754
No 68
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=30.81 E-value=1.4e+03 Score=30.36 Aligned_cols=251 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHH
Q 000274 1047 WSVLANHFISAGSHHD--EKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIK 1124 (1739)
Q Consensus 1047 W~vl~~hf~~vg~~~n--~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~ 1124 (1739)
+.-....+.++-|..| ..+|+-|-=.|+ ...-.+++-....||..-+. |.+.....||-++++.|..
T Consensus 37 F~qf~~ll~qvl~d~ns~~~~Rm~agl~LK---N~l~a~d~~~~~~~~qrW~~-----~~~E~k~qvK~~al~aL~s--- 105 (858)
T COG5215 37 FEQFISLLVQVLCDLNSNDQLRMVAGLILK---NSLHANDPELQKGCSQRWLG-----MRHESKEQVKGMALRALKS--- 105 (858)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHh---hhhhcCCHHHHHHHHHhhcc-----CCHHHHHHHHHHHHHHhcC---
Q ss_pred hccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHH
Q 000274 1125 SKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLR 1204 (1739)
Q Consensus 1125 ~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw 1204 (1739)
+...+...|=+.+-.|-+ -.++.....++...+..-+......+.--.|++.+-
T Consensus 106 -----------------------~epr~~~~Aaql~aaIA~---~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~g 159 (858)
T COG5215 106 -----------------------PEPRFCTMAAQLLAAIAR---MELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICG 159 (858)
T ss_pred -----------------------CccHHHHHHHHHHHHHHH---hhCccccchHHHHHHHHhccccCchHhHHHHHHHHH
Q ss_pred HHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhc--CCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHH
Q 000274 1205 ICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLT--SDPRPEVRSCALEVLFDLLNERGSKFSASFWES 1282 (1739)
Q Consensus 1205 ~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~--~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~ 1282 (1739)
....... .+.....--.+|+...--. ..+...||-.||..|.+-+.---..|-.+.=..
T Consensus 160 y~ces~~-------------------Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erN 220 (858)
T COG5215 160 YHCESEA-------------------PEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERN 220 (858)
T ss_pred HHhhccC-------------------HHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhc
Q ss_pred HHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhhcCCChhHHHHHHH
Q 000274 1283 IFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVC-FMLPPLLSLLLDCAKKPDQSVVSISLG 1361 (1739)
Q Consensus 1283 If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~-~~L~~~l~lL~~cI~q~ne~ia~ig~~ 1361 (1739)
.|-+|+ -......+ .+-..-|+..++++..-||+.+. .|=.-+..+...+++++||++|--++.
T Consensus 221 y~mqvv----ceatq~~d-----------~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavE 285 (858)
T COG5215 221 YFMQVV----CEATQGND-----------EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVE 285 (858)
T ss_pred hhheee----ehhccCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHH
Q 000274 1362 ALVHLIEVGGHQFSESDWDTLLK 1384 (1739)
Q Consensus 1362 cL~~Li~~~~~~f~~~~W~~i~~ 1384 (1739)
- |..||.
T Consensus 286 f----------------Wstice 292 (858)
T COG5215 286 F----------------WSTICE 292 (858)
T ss_pred H----------------HHHHHH
No 69
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=30.40 E-value=7.5e+02 Score=32.05 Aligned_cols=244 Identities=12% Similarity=0.148 Sum_probs=122.5
Q ss_pred CchHHHHHHHHHHHHHHHHhccCCc------ccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 000274 1106 SRSETIRSLIVDCIVQMIKSKVGSI------KSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDC 1179 (1739)
Q Consensus 1106 s~~~eVre~IL~cL~qmI~~~~~~I------kSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dl 1179 (1739)
.++...|-..|+.+.+++......+ ...=-+-|.+.- ..-|..++.++-.+..... .......|
T Consensus 58 d~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~-------a~si~~~~r~l~~~l~~e~---~~~~~tq~ 127 (728)
T KOG4535|consen 58 DPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMI-------ACSIRELHRCLLLALVAES---SSQTVTQI 127 (728)
T ss_pred CCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHH-------HHHHHHHHHHHHHHHHHhc---CchhHHHH
Confidence 4566677777777777665432111 101111122111 2335566777755543211 23556789
Q ss_pred HHHHHHHHhccCcccchHHHHHhHHHHHH-HhhcccCCCCCCCCCCccccCccchhhhch-HHHHHHHhhhcCCCCHHHH
Q 000274 1180 VNCLIRFANNKTSHRISLKAIALLRICED-RLAEGLIPGGDLKPIDVETDATFDVTEHFW-FPMLAGLSDLTSDPRPEVR 1257 (1739)
Q Consensus 1180 I~cL~~F~~q~~d~nISL~AI~lLw~~~d-~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW-~pLL~~Ls~l~~D~R~EVR 1257 (1739)
|+||...+.+.-+..+-+.=+--+|+=.+ +++... ...+.= +.++..+. -+.-+-|||.
T Consensus 128 ~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d------------------~~v~vs~l~~~~~~v-~t~~~~pei~ 188 (728)
T KOG4535|consen 128 IKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD------------------VNVRVSSLTLLGAIV-STHAPLPEVQ 188 (728)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC------------------CChhhHHHHHHHHHH-hcCCCCHHHH
Confidence 99999999988776665555555555333 222211 111111 11111111 1223456654
Q ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhccccc---------------ccchhhhHHHHHH------
Q 000274 1258 SCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESL---------------ISSEDEWFRETSI------ 1316 (1739)
Q Consensus 1258 ~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~---------------~~~~~~Wl~eT~~------ 1316 (1739)
..--+---.-=..-.+.-++++|+.++.. |-............ ......|+-.-..
T Consensus 189 ~~~~~~~s~~n~~~~h~s~~~~~~~l~~~---~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~ 265 (728)
T KOG4535|consen 189 LLLQQPCSSSNSATPHLSPPDWWKKLPAG---PSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGST 265 (728)
T ss_pred HHhcCCCccccccCCCCCChHHHHhcCCC---chhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCc
Confidence 32111000000011233478899987754 44444432211100 0112334311111
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 000274 1317 --------HSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTL 1382 (1739)
Q Consensus 1317 --------~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~Li~~~~~~f~~~~W~~i 1382 (1739)
.+++ +..+...||..+...+-++...+..|+-.....+-.-|.-|+..|..+.+....++-|+.-
T Consensus 266 ~~ps~~rle~~q-vl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~ 338 (728)
T KOG4535|consen 266 YEPSPMRLEALQ-VLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAP 338 (728)
T ss_pred cCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccch
Confidence 1111 2233445666666556666667777777777788888888999999999988888888853
No 70
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=29.94 E-value=2.9e+02 Score=38.15 Aligned_cols=162 Identities=14% Similarity=0.160 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHhccCCccc-CcHHHHH-HHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhh-hhhHHHHHHHH--H
Q 000274 1110 TIRSLIVDCIVQMIKSKVGSIKS-GWRSVFM-IFTAAADDEVESIVESAFENVEQVILEHFDQVV-GDCFMDCVNCL--I 1184 (1739)
Q Consensus 1110 eVre~IL~cL~qmI~~~~~~IkS-GWk~IF~-IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~-~~~f~dlI~cL--~ 1184 (1739)
.-|..+.+-+..+++.+-..|+| |=.-.|+ ++.++.+++++.-.-.+|..++.|..-.|+--+ .+.+-+.+-|- .
T Consensus 142 ~~R~~~~~Il~~~l~~~~~~l~s~~~D~~~~~f~~~~~GEKDPRnLml~F~l~~~i~s~~~~l~~F~edlFeV~~CYFPI 221 (1030)
T KOG1967|consen 142 KERLLQYEILEWFLDYRLEFLKSLGPDFLFTAFCKVVDGEKDPRNLMLVFSLVKEISSLNFPLGPFTEDLFEVIACYFPI 221 (1030)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcCCCCchhhHHHHHHHHHHhhccCCCCccHHHHHHHhheeeee
Confidence 34666777777788888888988 8888888 788888888888889999999999873332111 13344555554 3
Q ss_pred HHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 000274 1185 RFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVL 1264 (1739)
Q Consensus 1185 ~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtL 1264 (1739)
.|.-.+.|.+. .+.=++-..+...+... ..+..+-+|+|.. =..++.+-+..-+++||
T Consensus 222 ~Fkppk~D~~~-I~reDL~~sLr~al~st------------------P~Fa~~~lp~LlE---KL~as~~~~K~DsL~~L 279 (1030)
T KOG1967|consen 222 TFKPPKDDTIT-IRREDLKASLRSALVST------------------PSFAPFALPLLLE---KLNASDPSAKVDSLDTL 279 (1030)
T ss_pred eccCCCCCccc-ccHHHHHHHHHHHHhcC------------------ccchhhHHHHHHH---HhccccchhhhhHHHHH
Confidence 45555555432 11111212222222211 2234556665543 22445677888999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHhHHHHHH
Q 000274 1265 FDLLNERGSKFSASFWESIFHRVLFPIFD 1293 (1739)
Q Consensus 1265 F~iL~~~G~~f~~~~W~~If~~VLfPIfd 1293 (1739)
-++...||..==..+|...|..+=+-|++
T Consensus 280 ~ec~~~ygv~~~~~~~~~lWsaik~ei~~ 308 (1030)
T KOG1967|consen 280 NECCLKYGVRRMLPAQKKLWSAIKPEIGQ 308 (1030)
T ss_pred HHHHHHhCchhhhhhHHHHHHHHHHHHcc
Confidence 99999999652122366555433333444
No 71
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.77 E-value=1.7e+03 Score=30.89 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=94.4
Q ss_pred cCchHHHHHHHHHHHHHHHHhccCCc-ccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHH-hhhh-------------h
Q 000274 1105 NSRSETIRSLIVDCIVQMIKSKVGSI-KSGWRSVFMIFTAAADDEVESIVESAFENVEQVI-LEHF-------------D 1169 (1739)
Q Consensus 1105 ~s~~~eVre~IL~cL~qmI~~~~~~I-kSGWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~-~d~~-------------~ 1169 (1739)
+++-.+=|+-.++.|+.+-..+-..+ .+|-++++.+|..=-.| +.++..+.+++--++ ++.+ +
T Consensus 33 ssTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D--~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g 110 (970)
T KOG0946|consen 33 SSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMD--PEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLG 110 (970)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCC--HHHHHHHHHHHHHHHhcCcchhhcccchhhhHHH
Confidence 44555666666777776655544333 46888888888765444 458888888774332 2222 1
Q ss_pred hhhhhhH---HHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHH-HHHHH
Q 000274 1170 QVVGDCF---MDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFP-MLAGL 1245 (1739)
Q Consensus 1170 ~l~~~~f---~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~p-LL~~L 1245 (1739)
.-..+.| .|.|.||..|.... |-.+-+.||.+|-.+-...... . .+. -+=+| =...|
T Consensus 111 ~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e----~------------q~~--ll~~P~gIS~l 171 (970)
T KOG0946|consen 111 LWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTE----L------------QDA--LLVSPMGISKL 171 (970)
T ss_pred HHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHH----H------------HHH--HHHCchhHHHH
Confidence 1122333 36788888888754 4568889999877653322100 0 000 00011 14566
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 000274 1246 SDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIF 1284 (1739)
Q Consensus 1246 s~l~~D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If 1284 (1739)
.++..|.|.-||+-||-.|-.+.+..++.=.--.++.+|
T Consensus 172 mdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaF 210 (970)
T KOG0946|consen 172 MDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAF 210 (970)
T ss_pred HHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHH
Confidence 677788898999999888888888777644333344444
No 72
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=25.47 E-value=1.8e+03 Score=30.79 Aligned_cols=167 Identities=16% Similarity=0.207 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHH
Q 000274 1064 KIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTA 1143 (1739)
Q Consensus 1064 ~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~ 1143 (1739)
.++...++.+.++++.+-. .|=.+.+.++....-.+...+||+.+..++..++..+| +.|.+--.+-..
T Consensus 494 Rvr~ail~~ip~la~q~~~-------~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G----~~w~~~~~i~k~ 562 (759)
T KOG0211|consen 494 RVRLAILEYIPQLALQLGV-------EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG----SEWARLEEIPKL 562 (759)
T ss_pred HHHHHHHHHHHHHHHhhhh-------HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC----cchhHHHhhHHH
Confidence 4555666666666554320 12222244443333334556899999999999999987 568765444444
Q ss_pred hhcchhH-HHHHHHH-HHHHHHHhhhhhhhhh-hh-HHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCC
Q 000274 1144 AADDEVE-SIVESAF-ENVEQVILEHFDQVVG-DC-FMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGD 1219 (1739)
Q Consensus 1144 aa~d~~e-~iV~~aF-~~l~~I~~d~~~~l~~-~~-f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~ 1219 (1739)
.+.+... ..++.++ .++.. +..+.+ +. -.++...+..+++ ....||-+.+...|..+...|..-
T Consensus 563 L~~~~q~~y~~R~t~l~si~~-----la~v~g~ei~~~~Llp~~~~l~~-D~vanVR~nvak~L~~i~~~L~~~------ 630 (759)
T KOG0211|consen 563 LAMDLQDNYLVRMTTLFSIHE-----LAEVLGQEITCEDLLPVFLDLVK-DPVANVRINVAKHLPKILKLLDES------ 630 (759)
T ss_pred HHHhcCcccchhhHHHHHHHH-----HHHHhccHHHHHHHhHHHHHhcc-CCchhhhhhHHHHHHHHHhhcchH------
Confidence 4332221 2222221 11111 111111 11 1233334444443 445789999999999888777531
Q ss_pred CCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000274 1220 LKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLN 1269 (1739)
Q Consensus 1220 ~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~ 1269 (1739)
...+.-.|++..|.. |+..+||-.|+..+-.+..
T Consensus 631 -------------~~~~~v~pll~~L~~---d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 631 -------------VRDEEVLPLLETLSS---DQELDVRYRAILAFGSIEL 664 (759)
T ss_pred -------------HHHHHHHHHHHHhcc---CcccchhHHHHHHHHHHHH
Confidence 123455677776655 9999999999988776655
No 73
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=25.08 E-value=5.4e+02 Score=28.94 Aligned_cols=118 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 000274 1251 DPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFY 1330 (1739)
Q Consensus 1251 D~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf 1330 (1739)
|.-+|+|+.|.++|+.+|..-.+... +..+++.+...-.+. .+-..++...+.++-...-
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~-----------~~~~~~~v~~GL~D~---------~DIk~L~~~~l~kl~~~~p 97 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRID-----------ISEFLDRVEAGLKDE---------HDIKMLCHLMLSKLAQLAP 97 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS------------HHHHHHHHHHTTSS----------HHHHHHHHHHHHHHHHS-H
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCC-----------HHHHHHHHHhhcCCc---------HHHHHHHHHHHHHHHHhCH
Q ss_pred HHHHHhHHHHHHHHHHhh---------cCCChhHHHHHHHHHHHHHHH----cCCCCCHhhHHHHHHHHHH
Q 000274 1331 KEVCFMLPPLLSLLLDCA---------KKPDQSVVSISLGALVHLIEV----GGHQFSESDWDTLLKSIRD 1388 (1739)
Q Consensus 1331 ~~l~~~L~~~l~lL~~cI---------~q~ne~ia~ig~~cL~~Li~~----~~~~f~~~~W~~i~~~~~~ 1388 (1739)
..+..-|+.+..-|..-+ +|+-|.....-.++|+-+..- -+..-+...|...+..++.
T Consensus 98 ~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~~~~f~~~i~~ 168 (169)
T PF08623_consen 98 EEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNKWNEFVEWIKK 168 (169)
T ss_dssp HHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHhc
No 74
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=24.72 E-value=1.4e+02 Score=28.43 Aligned_cols=70 Identities=13% Similarity=0.256 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHH
Q 000274 1059 SHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVF 1138 (1739)
Q Consensus 1059 ~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~IkSGWk~IF 1138 (1739)
.+++..++..|+..|.++. ..+.+.++...+ ...++.||..++..|.+| |.+..+
T Consensus 10 ~~~~~~vr~~a~~~L~~~~--------------~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i----------~~~~~~ 64 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELG--------------DPEAIPALIELL-KDEDPMVRRAAARALGRI----------GDPEAI 64 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCT--------------HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC----------HHHHTH
T ss_pred cCCCHHHHHHHHHHHHHcC--------------CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh----------CCHHHH
Confidence 6888999999988886221 124566666666 467889999999999875 344455
Q ss_pred HHHHHhhcchhHHHH
Q 000274 1139 MIFTAAADDEVESIV 1153 (1739)
Q Consensus 1139 ~IL~~aa~d~~e~iV 1153 (1739)
..|.....++....|
T Consensus 65 ~~L~~~l~~~~~~~v 79 (88)
T PF13646_consen 65 PALIKLLQDDDDEVV 79 (88)
T ss_dssp HHHHHHHTC-SSHHH
T ss_pred HHHHHHHcCCCcHHH
Confidence 555555444333333
No 75
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.34 E-value=1.7e+03 Score=29.17 Aligned_cols=81 Identities=20% Similarity=0.378 Sum_probs=52.1
Q ss_pred cccchHHHHHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhc
Q 000274 1192 SHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNER 1271 (1739)
Q Consensus 1192 d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~ 1271 (1739)
+..+-++|+..|..+...+... ....+..++--.+..+..++..++|-.|+- ||..|..+
T Consensus 313 ~~~V~leam~~Lt~v~~~~~~~-------------------~l~~~~l~ialrlR~l~~se~~~~R~aa~~-Lfg~L~~l 372 (533)
T KOG2032|consen 313 NEEVQLEAMKCLTMVLEKASND-------------------DLESYLLNIALRLRTLFDSEDDKMRAAAFV-LFGALAKL 372 (533)
T ss_pred ccHHHHHHHHHHHHHHHhhhhc-------------------chhhhchhHHHHHHHHHHhcChhhhhhHHH-HHHHHHHH
Confidence 3668889999888776665432 123455666667777777889999998874 56666644
Q ss_pred cCCCCHHHHHHHHHHhHH----HHHHHhh
Q 000274 1272 GSKFSASFWESIFHRVLF----PIFDHVR 1296 (1739)
Q Consensus 1272 G~~f~~~~W~~If~~VLf----PIfd~l~ 1296 (1739)
.+. -|+..|.+++. |++..+.
T Consensus 373 ~g~----~~e~~Fte~v~k~~~~lllhl~ 397 (533)
T KOG2032|consen 373 AGG----GWEEFFTEQVKKRLAPLLLHLQ 397 (533)
T ss_pred cCC----CchhhhHHHHHhccccceeeeC
Confidence 331 27777765544 5555543
No 76
>PRK09687 putative lyase; Provisional
Probab=23.70 E-value=1e+03 Score=28.73 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=88.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcc
Q 000274 1052 NHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIK 1131 (1739)
Q Consensus 1052 ~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~Ik 1131 (1739)
+.+...-.|++..||..|+..|+++.. .+.+.++..+ ..+.++.+|...+..|.++-....
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~--------------~~~~~~l~~l-l~~~d~~vR~~A~~aLg~lg~~~~---- 86 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGG--------------QDVFRLAIEL-CSSKNPIERDIGADILSQLGMAKR---- 86 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCc--------------chHHHHHHHH-HhCCCHHHHHHHHHHHHhcCCCcc----
Confidence 345555578999999999999875531 2333444443 346688999999999999532211
Q ss_pred cCcHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHh
Q 000274 1132 SGWRSVFMIFTAA-ADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRL 1210 (1739)
Q Consensus 1132 SGWk~IF~IL~~a-a~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L 1210 (1739)
+=..+|..|... ..|++..+-..|...+-.+....... ...++.-+....... +..+-+.|+.-|-.+.
T Consensus 87 -~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~~--- 156 (280)
T PRK09687 87 -CQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDK-STNVRFAVAFALSVIN--- 156 (280)
T ss_pred -chHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCC-CHHHHHHHHHHHhccC---
Confidence 122466667655 45555445456666665443222100 011222222222211 3334444444331110
Q ss_pred hcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 000274 1211 AEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDL 1267 (1739)
Q Consensus 1211 ~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~i 1267 (1739)
. . ..+..|..+..|+.++||..|+..|-++
T Consensus 157 ------~-------------~--------~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 157 ------D-------------E--------AAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred ------C-------------H--------HHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 0 0 1234444555688999999999999876
No 77
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=22.87 E-value=1.4e+02 Score=23.41 Aligned_cols=28 Identities=7% Similarity=0.061 Sum_probs=22.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000274 1051 ANHFISAGSHHDEKIAMYAIDSLRQLSM 1078 (1739)
Q Consensus 1051 ~~hf~~vg~~~n~~va~~AiDsLrQLs~ 1078 (1739)
-++|.+..++++..||..|+..|.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4577788889999999999999988763
No 78
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=22.71 E-value=2.1e+03 Score=29.75 Aligned_cols=221 Identities=15% Similarity=0.297 Sum_probs=105.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHH---hccCCc
Q 000274 1054 FISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIK---SKVGSI 1130 (1739)
Q Consensus 1054 f~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~---~~~~~I 1130 (1739)
++++-...|..+...++..|+.||.-.-.+.++ .+..++.++..++.. .+.+++...++.|.++=. .+..-+
T Consensus 295 Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m----~~~giV~kL~kLl~s-~~~~l~~~aLrlL~NLSfd~~~R~~mV 369 (708)
T PF05804_consen 295 LVKCLDRENEELLILAVTFLKKLSIFKENKDEM----AESGIVEKLLKLLPS-ENEDLVNVALRLLFNLSFDPELRSQMV 369 (708)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHH----HHcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 344444567777777888888887644444443 245567777766643 355677777777766421 122222
Q ss_pred ccCc-HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh-hhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHH
Q 000274 1131 KSGW-RSVFMIFTAAADDEVESIVESAFENVEQVILE-HFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICED 1208 (1739)
Q Consensus 1131 kSGW-k~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d-~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d 1208 (1739)
+.|= +.+-.+|. +++ ....+...+..+..+ .....+ ++.+||..+....-...+..+...++.++-+++-
T Consensus 370 ~~GlIPkLv~LL~----d~~--~~~val~iLy~LS~dd~~r~~f--~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~ 441 (708)
T PF05804_consen 370 SLGLIPKLVELLK----DPN--FREVALKILYNLSMDDEARSMF--AYTDCIPQLMQMLLENSEEEVQLELIALLINLAL 441 (708)
T ss_pred HCCCcHHHHHHhC----CCc--hHHHHHHHHHHhccCHhhHHHH--hhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc
Confidence 3343 33333443 111 112234444444332 222222 2334444444443333344555556666555432
Q ss_pred ------Hhhccc-CCCC---CCCC-----------CCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 000274 1209 ------RLAEGL-IPGG---DLKP-----------IDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDL 1267 (1739)
Q Consensus 1209 ------~L~~~~-~~~~---~~~~-----------~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~i 1267 (1739)
.+.++. ++.. ..+. ++..+ ......+.+.+..|.+++..+..+ +.+.++
T Consensus 442 ~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~----~~~k~~f~~~i~~L~~~v~~~~~e------e~~vE~ 511 (708)
T PF05804_consen 442 NKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHD----GPLKELFVDFIGDLAKIVSSGDSE------EFVVEC 511 (708)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHHhhcCCcH------HHHHHH
Confidence 122110 0000 0000 00000 022345566666667776543222 344444
Q ss_pred HHhccC-CCCHHHHHHHHHH-hHHHHHHHhhh
Q 000274 1268 LNERGS-KFSASFWESIFHR-VLFPIFDHVRH 1297 (1739)
Q Consensus 1268 L~~~G~-~f~~~~W~~If~~-VLfPIfd~l~~ 1297 (1739)
|-.-+. ..+..-|..++.+ =|.|.+..+..
T Consensus 512 LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~ 543 (708)
T PF05804_consen 512 LGILANLTIPDLDWAQLLQEYNLLPWLKDLLK 543 (708)
T ss_pred HHHHHhcccCCcCHHHHHHhCCHHHHHHHHhC
Confidence 443332 2344579999975 67788887764
No 79
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=22.68 E-value=8.9e+02 Score=32.24 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=56.1
Q ss_pred CcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhc
Q 000274 1133 GWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAE 1212 (1739)
Q Consensus 1133 GWk~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~ 1212 (1739)
+-..+|-.+-..+.|....+=.-|++.++.|++-+...=...-..-++..+.+-.=+ ...-|++-++.+-.|++...+
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWr--tK~aslellg~m~~~ap~qLs 290 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWR--TKMASLELLGAMADCAPKQLS 290 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhh--hHHHHHHHHHHHHHhchHHHH
Confidence 444444444444445555566677888877776544322222222333333222111 112233333333333333221
Q ss_pred ccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 000274 1213 GLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFD 1266 (1739)
Q Consensus 1213 ~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~ 1266 (1739)
..---+.-.++++..|..+|||+.|+++|-+
T Consensus 291 -----------------------~~lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 291 -----------------------LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred -----------------------HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 1222356677788889999999999987765
No 80
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.59 E-value=1.6e+03 Score=31.20 Aligned_cols=168 Identities=20% Similarity=0.280 Sum_probs=103.1
Q ss_pred hchHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCC-CHHHHHHHHHHhHH----HHHHHhhhhccc-------c-
Q 000274 1236 HFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKF-SASFWESIFHRVLF----PIFDHVRHAGKE-------S- 1302 (1739)
Q Consensus 1236 ~lW~pLL~~Ls~l~~D~R~EVR~~ALqtLF~iL~~~G~~f-~~~~W~~If~~VLf----PIfd~l~~~~~~-------~- 1302 (1739)
+-|=.||.-|..-....+-.+-++.+.|.-.+++.|-..| +.+.|..|- .||- |+.+-++...+. .
T Consensus 122 ~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK-~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~ 200 (960)
T KOG1992|consen 122 DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIK-LVLDRFAEPLTDLFRKTMELIQRHANDAA 200 (960)
T ss_pred hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHH-HHHHhhHhHHHHHHHHHHHHHhhcccchh
Confidence 3588888888877777788899999999999999999998 777888764 3454 666655432111 0
Q ss_pred ---------------------c-----c-cchhhhHHHHHHHHH--------------------HHHHHHHHH----HHH
Q 000274 1303 ---------------------L-----I-SSEDEWFRETSIHSL--------------------QLLCNLFNT----FYK 1331 (1739)
Q Consensus 1303 ---------------------~-----~-~~~~~Wl~eT~~~aL--------------------~~lv~LF~~----yf~ 1331 (1739)
+ + .+-+.||...+.+-- ..+|++|.. |-+
T Consensus 201 ~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeE 280 (960)
T KOG1992|consen 201 ALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEE 280 (960)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHH
Confidence 0 0 123789865544321 144555543 334
Q ss_pred HHHHhHHHH----HHHHHHhhcCCC-hhHHHHHHHHHHHHHHHc--CCCC-CHhhHHHHHHHHH--HHHhhcCchhhhhh
Q 000274 1332 EVCFMLPPL----LSLLLDCAKKPD-QSVVSISLGALVHLIEVG--GHQF-SESDWDTLLKSIR--DASYTTQPLELLNE 1401 (1739)
Q Consensus 1332 ~l~~~L~~~----l~lL~~cI~q~n-e~ia~ig~~cL~~Li~~~--~~~f-~~~~W~~i~~~~~--~~~~~T~p~~l~~~ 1401 (1739)
.+.+++++| |.||+.--.++. |.++.-+..-|-.....- ..-| .++.-..+|+.+. ++.-.---.|||+.
T Consensus 281 ef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED 360 (960)
T KOG1992|consen 281 EFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFED 360 (960)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhcc
Confidence 566788886 677777666554 777766666655544431 1223 3344455554432 33333334578887
Q ss_pred ccc
Q 000274 1402 NLK 1404 (1739)
Q Consensus 1402 ~~~ 1404 (1739)
+|.
T Consensus 361 ~pl 363 (960)
T KOG1992|consen 361 NPL 363 (960)
T ss_pred CHH
Confidence 776
No 81
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=22.30 E-value=86 Score=35.49 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=29.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHHhhcC
Q 000274 113 LVLNPLRLAIETKNLKLLESALDCLHKLIAYD 144 (1739)
Q Consensus 113 ~if~Pf~lAc~sks~ki~~~ALdclqKLis~~ 144 (1739)
.++.|++-|..|+++.++..+|.|||+|+..+
T Consensus 80 qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 80 QLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999999997554
No 82
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=22.26 E-value=5.6e+02 Score=25.37 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 000274 1312 RETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVH 1365 (1739)
Q Consensus 1312 ~eT~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL~~ 1365 (1739)
.+..-..++.+..+...+.+.|..=++-++.+|......+++.+.+.|..|++.
T Consensus 32 ~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 32 IDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 467778888999999989899987789999999999998999999999998864
No 83
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=21.70 E-value=8.3e+02 Score=29.96 Aligned_cols=108 Identities=19% Similarity=0.105 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHhhc
Q 000274 1272 GSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFY--KEVCFMLPPLLSLLLDCAK 1349 (1739)
Q Consensus 1272 G~~f~~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf--~~l~~~L~~~l~lL~~cI~ 1349 (1739)
+...+.+.|..-+..-|.-.++.+.... ..|+..+|.+++++|.++| +.+..-...++..+..|++
T Consensus 29 ~~~~~e~~~~~~~e~~L~~~Id~l~eK~------------~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lk 96 (309)
T PF05004_consen 29 SEEADEESSQEDLEDKLKEAIDLLTEKS------------SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLK 96 (309)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Q ss_pred CCChhHHHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHHHHh
Q 000274 1350 KPDQSVVSISLGALVHLIEVGG-HQFSESDWDTLLKSIRDASY 1391 (1739)
Q Consensus 1350 q~ne~ia~ig~~cL~~Li~~~~-~~f~~~~W~~i~~~~~~~~~ 1391 (1739)
++...=...+..++.-|.++.| ..=.++.++.+...|.++..
T Consensus 97 kg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~ 139 (309)
T PF05004_consen 97 KGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILT 139 (309)
T ss_pred cCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHh
No 84
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=21.39 E-value=8.8e+02 Score=30.95 Aligned_cols=238 Identities=15% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcc--CCccc-CcHHHHHHHH-------------HhhcchhHHHHHHHHHHHHHHHhhhhhhhhh
Q 000274 1110 TIRSLIVDCIVQMIKSKV--GSIKS-GWRSVFMIFT-------------AAADDEVESIVESAFENVEQVILEHFDQVVG 1173 (1739)
Q Consensus 1110 eVre~IL~cL~qmI~~~~--~~IkS-GWk~IF~IL~-------------~aa~d~~e~iV~~aF~~l~~I~~d~~~~l~~ 1173 (1739)
++|...|.-|.+.+.+.+ ..+.. -+..+|.++. .-..+.++.+...++..++.|++-++.-+..
T Consensus 41 e~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~NifR~lP~~~~~~~~~~~d~~~~e~~WpHL~~vY~il~~~i~~ 120 (409)
T PF01603_consen 41 EIKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIFRPLPPIPNPSFDPDDDEPFLEPSWPHLQLVYEILLRFIES 120 (409)
T ss_dssp HSHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-S-----SS--S-GGG------TTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhccCCCCCcccccCCccccccccccccHhHHHHHHHHHHHHHC
Q ss_pred hhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCccccCccchhhhchHHHHHHHhhhcCCCC
Q 000274 1174 DCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPR 1253 (1739)
Q Consensus 1174 ~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R 1253 (1739)
..+.. ++.--+.+.-.+-+++|. ........+-.-+|-.+..-..+.|
T Consensus 121 ~~~~~--------~~~~i~~~fi~~Ll~l~~------------------------S~D~rER~~lk~~l~~iy~k~~~~r 168 (409)
T PF01603_consen 121 PPFDP--------AKKYIDQKFIKKLLELFD------------------------SPDPRERDYLKTILHRIYGKFPNLR 168 (409)
T ss_dssp TT--C--------CTTTS-HHHHHHHHHTTT------------------------SSTHHHHHHHHHHHHHHHHH-TTTH
T ss_pred ccccH--------HHHHcCHHHHHHHHHHcC------------------------CCCHHHHHHHHHHHHHHHHHhhhhH
Q ss_pred HHHHHHHHHHHH----------------HHHHhccCCCC---HHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHH
Q 000274 1254 PEVRSCALEVLF----------------DLLNERGSKFS---ASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRET 1314 (1739)
Q Consensus 1254 ~EVR~~ALqtLF----------------~iL~~~G~~f~---~~~W~~If~~VLfPIfd~l~~~~~~~~~~~~~~Wl~eT 1314 (1739)
+-+|+.-.+.|. +++.++-..|. .+.=...+.+||+|+...-. ...-...|...
T Consensus 169 ~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~-------~~~y~~~L~~~ 241 (409)
T PF01603_consen 169 SFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPH-------LSSYHQQLSYC 241 (409)
T ss_dssp HHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTG-------GGGTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCc-------HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH-------------------------------HHHHhHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 000274 1315 SIHSLQLLCNLFNTFYK-------------------------------EVCFMLPPLLSLLLDCAKKPDQSVVSISLGAL 1363 (1739)
Q Consensus 1315 ~~~aL~~lv~LF~~yf~-------------------------------~l~~~L~~~l~lL~~cI~q~ne~ia~ig~~cL 1363 (1739)
..+-+..=..+...++. .+......++..|..|++++|-++|.-+...+
T Consensus 242 ~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 242 VVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp HHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred HHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q ss_pred HH----------------HHHHcCCCCCHhhHHHHHHHH
Q 000274 1364 VH----------------LIEVGGHQFSESDWDTLLKSI 1386 (1739)
Q Consensus 1364 ~~----------------Li~~~~~~f~~~~W~~i~~~~ 1386 (1739)
.+ .|.....+-...||+..+..+
T Consensus 322 ~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~ 360 (409)
T PF01603_consen 322 NNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNL 360 (409)
T ss_dssp GSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHH
T ss_pred CCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHH
No 85
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=20.71 E-value=3.3e+02 Score=29.01 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh--hhhhcchhhHHhhhhhHHHHHhc--CchHHHHHHHHHHHHHHHHhcc
Q 000274 1060 HHDEKIAMYAIDSLRQLSMKYLE--RAELTNFTFQNDILKPFVVLIRN--SRSETIRSLIVDCIVQMIKSKV 1127 (1739)
Q Consensus 1060 ~~n~~va~~AiDsLrQLs~kfLe--~eEL~~f~fQ~~fLkPFe~im~~--s~~~eVre~IL~cL~qmI~~~~ 1127 (1739)
|+|+.+..+|+..|..+..---. +.|.+. ++||..+..++.. ..+.+||+.+++.|...-..++
T Consensus 48 ~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s----~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 48 YGNPHVQLLALTLLELLVKNCGKPFHLQVAD----KEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHhCChHHHHHHhh----HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 67888899998888766542211 122222 4666667777665 5788999999999887655544
No 86
>PLN03205 ATR interacting protein; Provisional
Probab=20.23 E-value=1.6e+03 Score=28.42 Aligned_cols=200 Identities=13% Similarity=0.213 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcc-------cCcHHHHHHHHHhh-cchhHHHHHHHHHHHHHHH
Q 000274 1093 NDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIK-------SGWRSVFMIFTAAA-DDEVESIVESAFENVEQVI 1164 (1739)
Q Consensus 1093 ~~fLkPFe~im~~s~~~eVre~IL~cL~qmI~~~~~~Ik-------SGWk~IF~IL~~aa-~d~~e~iV~~aF~~l~~I~ 1164 (1739)
+.++.|+.. +..-....+--..|+.|+.+++.--++=+ -.|-.+|++.+..| ....+.+.--|..+..-|+
T Consensus 322 qtLlEaLLd-LC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIl 400 (652)
T PLN03205 322 KSLVEPLLD-LCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIV 400 (652)
T ss_pred HHHHHHHHH-HHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhh
Q ss_pred hhhhhhhhhhhHHH--HHHHHHHHHhccCcccchHHHHHhHHHH--HHHhhcccCCCCCCCCCC--ccccCccchhhhch
Q 000274 1165 LEHFDQVVGDCFMD--CVNCLIRFANNKTSHRISLKAIALLRIC--EDRLAEGLIPGGDLKPID--VETDATFDVTEHFW 1238 (1739)
Q Consensus 1165 ~d~~~~l~~~~f~d--lI~cL~~F~~q~~d~nISL~AI~lLw~~--~d~L~~~~~~~~~~~~~~--~~~~~~~~~~~~lW 1238 (1739)
..--...-.+.|.. ...-+..+-+-..-..+--+|+.+|..+ ...+....-.++..+.+. .++........+.+
T Consensus 401 mssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f 480 (652)
T PLN03205 401 MSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF 480 (652)
T ss_pred hccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHH
Q ss_pred HHHHHHHhhhcCC-----CCHHHHHHHHHHH----------HHHHHhccCCCCHHHHHHHHHHhHHHHHHH
Q 000274 1239 FPMLAGLSDLTSD-----PRPEVRSCALEVL----------FDLLNERGSKFSASFWESIFHRVLFPIFDH 1294 (1739)
Q Consensus 1239 ~pLL~~Ls~l~~D-----~R~EVR~~ALqtL----------F~iL~~~G~~f~~~~W~~If~~VLfPIfd~ 1294 (1739)
-.+|.+|++++.- .+.+.|++|+-.| |++|..|-..=+.+|-..|+ +||--=++.
T Consensus 481 SsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLmLIL-qvLvSemd~ 550 (652)
T PLN03205 481 GKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLMLIL-HLLVAEIDS 550 (652)
T ss_pred HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHHHHH-HHHHHHhhh
Done!