Query 000274
Match_columns 1739
No_of_seqs 416 out of 1154
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 18:18:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000274.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_51-55//hhsearch_pdb/000274hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltl_A Brefeldin A-inhibited g 1.0 1 1 471.7 21.0 198 578-775 9-208 (211)
2 1r8s_E ARNO; protein transport 1.0 1 1 467.2 20.9 194 582-775 7-200 (203)
3 1ku1_A ARF guanine-nucleotide 1.0 1 1 456.5 19.1 196 578-775 14-226 (230)
4 2r09_A Cytohesin-3; autoinhibi 1.0 1 1 436.0 21.1 192 585-776 12-203 (347)
5 1xsz_A Guanine nucleotide exch 1.0 1 1 432.9 18.7 189 587-775 7-200 (356)
6 2bpt_A Importin beta-1 subunit 1.0 1 1 55.1 27.1 113 1254-1375 696-819 (861)
7 4fdd_A Transportin-1; heat rep 1.0 1 1 54.9 22.2 21 1253-1273 726-746 (852)
8 1ibr_B P95, importin beta-1 su 1.0 1 1 51.5 20.4 309 1050-1387 129-457 (462)
9 1u6g_C TIP120 protein, CAND1; 1.0 1 1 51.4 21.7 306 1022-1389 836-1152(1230)
10 4fdd_A Transportin-1; heat rep 1.0 1 1 50.9 24.5 109 1249-1372 679-788 (852)
No 1
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=1.00 E-value=1 Score=471.69 Aligned_cols=198 Identities=46% Similarity=0.776 Sum_probs=194.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 11699999635999999999713915658999978998899599999977037999588982105798727999999997
Q 000274 578 PDNFEKAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVD 657 (1739)
Q Consensus 578 p~~~e~~k~~K~~l~~~i~~FN~kpkkGI~~L~~~g~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~n~~vl~~yv~ 657 (1739)
..|||.+|+||..+++|+.+||.|||+||+||+++|+++++|++||+||+++++|||++||+|||+++++|..||++|++
T Consensus 9 ~~~~~~~k~rK~~~~~g~~~FN~~PkkGi~~L~~~g~i~~~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~vL~~yv~ 88 (211)
T 3ltl_A 9 GTQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVD 88 (211)
T ss_dssp ------CCSHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 00789999988999999999832999999999986998999999999998476754999999870466268999999998
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 0799998737999999701789986589999999999999871999--99982479999999998403788998889999
Q 000274 658 SMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPG--LFKNADTAYVLAYSVILLNTDAHNPMVWPKMT 735 (1739)
Q Consensus 658 ~~dF~~~~~~~ALR~fL~~frLPgEaQ~IdRime~Fa~ry~~~Np~--~f~~ad~~yvLaysiimLnTdlHn~~vk~kmt 735 (1739)
.|||+|++||+|||.||.+||||||+|+|||+||+||+|||+|||+ +|.|+|+||+|+||+||||||+|||+||+|||
T Consensus 89 ~fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlHn~~vk~kMt 168 (211)
T 3ltl_A 89 QHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMT 168 (211)
T ss_dssp TSCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHTCTTCCSCCC
T ss_pred HCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 55988997999999999737179842699999999999999858887774788899999999999856414864568989
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 7777762036898862219999999999630435545101
Q 000274 736 KSDFVRMNAVNDAEECASTELLEEIYDSIVKEEIKMKDDV 775 (1739)
Q Consensus 736 ~~~Fi~~n~~~~~~~~lp~e~L~~iY~~I~~~~i~l~~e~ 775 (1739)
+++|++|++|+|+|+|+|+|||..||++|+++||+|+++.
T Consensus 169 ~~~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~ 208 (211)
T 3ltl_A 169 KEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETK 208 (211)
T ss_dssp HHHHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC---
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999998654367899999999999999984876278998
No 2
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=1.00 E-value=1 Score=467.17 Aligned_cols=194 Identities=46% Similarity=0.782 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99996359999999997139156589999789988995999999770379995889821057987279999999970799
Q 000274 582 EKAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKF 661 (1739)
Q Consensus 582 e~~k~~K~~l~~~i~~FN~kpkkGI~~L~~~g~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~n~~vl~~yv~~~dF 661 (1739)
++.|++|+.++.|+.+||.|||+||+||+++|+++++|++||+||+.+++|+|++||+|||+++++|..||++|++.|||
T Consensus 7 ~~~~~~k~~~~~g~~~FN~~PkkGi~~L~~~~~l~~~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~vl~~y~~~fdF 86 (203)
T 1r8s_E 7 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEF 86 (203)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 34888889999999998129999999999879999999999999987768589999999851443799999999996497
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 99873799999970178998658999999999999987199999982479999999998403788998889999777776
Q 000274 662 SGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVR 741 (1739)
Q Consensus 662 ~~~~~~~ALR~fL~~frLPgEaQ~IdRime~Fa~ry~~~Np~~f~~ad~~yvLaysiimLnTdlHn~~vk~kmt~~~Fi~ 741 (1739)
+|++||+|||.||.+||||||+|+|||+|++||+|||+|||+.|.++|+||+|+||+||||||+|||+||+|||+++|++
T Consensus 87 ~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn~~vk~kMt~~~Fi~ 166 (203)
T 1r8s_E 87 TDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVA 166 (203)
T ss_dssp TTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 89968999999997261787168999999999999998497656781167999989988651004742223467999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 2036898862219999999999630435545101
Q 000274 742 MNAVNDAEECASTELLEEIYDSIVKEEIKMKDDV 775 (1739)
Q Consensus 742 ~n~~~~~~~~lp~e~L~~iY~~I~~~~i~l~~e~ 775 (1739)
|++|+|+|+|+|+++|+.||++|+.+||+|++++
T Consensus 167 n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~ 200 (203)
T 1r8s_E 167 MNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDD 200 (203)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC-
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8626657899999999999999984878896576
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=1.00 E-value=1 Score=456.50 Aligned_cols=196 Identities=33% Similarity=0.543 Sum_probs=187.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC-CHHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 1169999963599999999971391565899997899889-959999997703-79995889821057987279999999
Q 000274 578 PDNFEKAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDN-DPTSVAQFLRNA-ANLDKAMIGDYLGQHEEFPVAVMHAY 655 (1739)
Q Consensus 578 p~~~e~~k~~K~~l~~~i~~FN~kpkkGI~~L~~~g~i~~-~p~~iA~FL~~~-~~Ldk~~iGeyLg~~~~~n~~vl~~y 655 (1739)
+.+++++|++|..+.+|+.+||+|||+||+||+++|++++ +|++||+||+.+ ++|||++||+|||+++ |..||++|
T Consensus 14 ~~~~~~~r~~K~~~~~~~~~FN~~PkkGI~~L~~~g~l~~~~~~~iA~fL~~~~~~L~k~~iGeyLg~~~--n~~vL~~y 91 (230)
T 1ku1_A 14 LVPRGSHMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD--KVSLLNEY 91 (230)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGG--GHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCC--HHHHHHHH
T ss_conf 8699999999999999999995499999999998898389998999999997276569999999980821--79999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC---------------CCCCCHHHHHHHHHHHHH
Q ss_conf 97079999873799999970178998658999999999999987199---------------999982479999999998
Q 000274 656 VDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNP---------------GLFKNADTAYVLAYSVIL 720 (1739)
Q Consensus 656 v~~~dF~~~~~~~ALR~fL~~frLPgEaQ~IdRime~Fa~ry~~~Np---------------~~f~~ad~~yvLaysiim 720 (1739)
++.|||+|++||+|||.||.+||||||+|+||||||+||+|||+||| ++|.++|+||+|+|||||
T Consensus 92 v~~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~~~~~~~f~s~D~vyvLaySiIm 171 (230)
T 1ku1_A 92 IRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIM 171 (230)
T ss_dssp HHTSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 85426799979999999998085885199999999999999998187775321010011223455770289999999999
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 4037889988899997777762036898862219999999999630435545101
Q 000274 721 LNTDAHNPMVWPKMTKSDFVRMNAVNDAEECASTELLEEIYDSIVKEEIKMKDDV 775 (1739)
Q Consensus 721 LnTdlHn~~vk~kmt~~~Fi~~n~~~~~~~~lp~e~L~~iY~~I~~~~i~l~~e~ 775 (1739)
||||+|||+||+|||+++|++|++|+|+|+|+|++||..||++|+.+||+|++|+
T Consensus 172 LNTDlHnp~vk~kMT~~~FikN~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~ 226 (230)
T 1ku1_A 172 LNTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEH 226 (230)
T ss_dssp HHHHHTCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC---
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8013026434677779999998646567788889999999999984834688667
No 4
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=1.00 E-value=1 Score=436.05 Aligned_cols=192 Identities=42% Similarity=0.748 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 96359999999997139156589999789988995999999770379995889821057987279999999970799998
Q 000274 585 KAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGM 664 (1739)
Q Consensus 585 k~~K~~l~~~i~~FN~kpkkGI~~L~~~g~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~n~~vl~~yv~~~dF~~~ 664 (1739)
|++|..+++|+.+||.+||+||+||+++|++.++|++||+||+.+++|||.+||+|||+++++|..||++|++.|||+|+
T Consensus 12 ~~~~~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vl~~~~~~~~f~~~ 91 (347)
T 2r09_A 12 TQRNAQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFVELHEFADL 91 (347)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCCSHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHHHHHHHHHTSCCTTC
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 88999999999998239999999999879999999999999985727578999998658970689999999995386899
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 73799999970178998658999999999999987199999982479999999998403788998889999777776203
Q 000274 665 KFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMNA 744 (1739)
Q Consensus 665 ~~~~ALR~fL~~frLPgEaQ~IdRime~Fa~ry~~~Np~~f~~ad~~yvLaysiimLnTdlHn~~vk~kmt~~~Fi~~n~ 744 (1739)
+||+|||.||.+||||||+|+|||+||+||+|||+|||++|.++|++|+|+||+||||||+|||++|+|||+++|++|++
T Consensus 92 ~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d~~~~l~~siimLntdlhn~~~k~kmt~~~fi~n~~ 171 (347)
T 2r09_A 92 NLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNR 171 (347)
T ss_dssp CHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 79999999997286897267899999999999998598656785489999999999705640530124587999998751
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 68988622199999999996304355451011
Q 000274 745 VNDAEECASTELLEEIYDSIVKEEIKMKDDVA 776 (1739)
Q Consensus 745 ~~~~~~~lp~e~L~~iY~~I~~~~i~l~~e~~ 776 (1739)
|++++.++|+++|..+|++|..+||.++++.+
T Consensus 172 ~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~ 203 (347)
T 2r09_A 172 GINEGGDLPEELLRNLYESIKNEPFKIPEDDG 203 (347)
T ss_dssp TTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 12677778999999997743137654554455
No 5
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=1.00 E-value=1 Score=432.92 Aligned_cols=189 Identities=34% Similarity=0.535 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCC--CCCHHHHHHHHHH-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 35999999999713915658999978998--8995999999770-37999588982105798727999999997079999
Q 000274 587 HKSTMEAAISEFNRKPVKGVEYLISNKLV--DNDPTSVAQFLRN-AANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSG 663 (1739)
Q Consensus 587 ~K~~l~~~i~~FN~kpkkGI~~L~~~g~i--~~~p~~iA~FL~~-~~~Ldk~~iGeyLg~~~~~n~~vl~~yv~~~dF~~ 663 (1739)
.|+...+|+.+||+|||+||+||++.+.. .++|++||+||+. +++|||++||+|||+++++|..||++|++.|||+|
T Consensus 7 ~~k~~~e~i~~FN~~PkkGI~~L~~~~~~~~~~~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~~VL~~yv~~fdF~g 86 (356)
T 1xsz_A 7 IEKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNG 86 (356)
T ss_dssp HHHTHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHHHHHHHHTSCCTT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999815999999999986001589999999999984587889999999985784578999999999669799
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC--CCCCHHHHHH
Q ss_conf 87379999997017899865899999999999998719999998247999999999840378899888--9999777776
Q 000274 664 MKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYSVILLNTDAHNPMVW--PKMTKSDFVR 741 (1739)
Q Consensus 664 ~~~~~ALR~fL~~frLPgEaQ~IdRime~Fa~ry~~~Np~~f~~ad~~yvLaysiimLnTdlHn~~vk--~kmt~~~Fi~ 741 (1739)
++||+|||.||.+||||||+|+|||+||+||+|||+|||+.|.++|++|+|+||+||||||+|||+|| +|||+++|++
T Consensus 87 ~~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~~yvLaySiImLNTDLHNpnvk~k~kMT~~dFik 166 (356)
T 1xsz_A 87 QSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKR 166 (356)
T ss_dssp SCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 98999999999828488508899999999999999739986687438999999999862100386555457898999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 2036898862219999999999630435545101
Q 000274 742 MNAVNDAEECASTELLEEIYDSIVKEEIKMKDDV 775 (1739)
Q Consensus 742 ~n~~~~~~~~lp~e~L~~iY~~I~~~~i~l~~e~ 775 (1739)
|++|+|+|+|+|+|+|+.||++|+.+||+++...
T Consensus 167 N~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~ 200 (356)
T 1xsz_A 167 NLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVK 200 (356)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCS
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8544468788989999999999970877557755
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=55.09 Aligned_cols=113 Identities=10% Similarity=0.177 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH---H---HHHHHHHHHHHHHHHHH
Q ss_conf 78899999999999986069999779999999967989998663124565665034---6---88779999999999999
Q 000274 1254 PEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDE---W---FRETSIHSLQLLCNLFN 1327 (1739)
Q Consensus 1254 ~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIf~~l~~~~~~~~~~~~~~---W---l~eT~~~aL~~lv~Lf~ 1327 (1739)
++||..|+..|-++....|..|.+ .+..++-+++..+..... ..+.+ . +.++...++.+++.-..
T Consensus 696 ~~vr~~~~~~l~~l~~~~~~~~~~-----~l~~~l~~l~~~~~~~~~----~~d~d~~~~~~~vr~~~l~~~~~i~~~l~ 766 (861)
T 2bpt_A 696 RELKPAVLSVFGDIASNIGADFIP-----YLNDIMALCVAAQNTKPE----NGTLEALDYQIKVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGHH-----HHHHHHHHHHHHHTCCCS----SSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 766599999999999984050899-----999999999999736789----99758899999999999999999999982
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHC-CCCCC
Q ss_conf 999999874798999999934289----8037899899999999980-99999
Q 000274 1328 TFYKEVCFMLPPLLSLLLDCAKKP----DQSVVSISLGALVHLIEVG-GHQFS 1375 (1739)
Q Consensus 1328 ~yf~~l~~~L~~~l~lL~~ci~q~----~~~ia~ig~~cL~~Li~~~-~~~f~ 1375 (1739)
..-..+...++.++..|..+...+ ++.+.+.+..++..|...- |+.|.
T Consensus 767 ~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~ 819 (861)
T 2bpt_A 767 DKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIK 819 (861)
T ss_dssp TCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTG
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 67788999999999999998748555786999999999999999882882488
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=54.93 Aligned_cols=21 Identities=5% Similarity=-0.265 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCC
Q ss_conf 878899999999999986069
Q 000274 1253 RPEVRSCALEVLFDLLNERGS 1273 (1739)
Q Consensus 1253 R~EVR~~ALqtLF~iL~~~G~ 1273 (1739)
+..|+..|+.++.++...++.
T Consensus 726 ~~~~~~~a~~~igrl~~~~~~ 746 (852)
T 4fdd_A 726 PKTLLENTAITIGRLGYVCPQ 746 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHHHCHH
T ss_conf 720778899999999986889
No 8
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=51.54 Aligned_cols=309 Identities=10% Similarity=0.123 Sum_probs=155.2
Q ss_pred HHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHC
Q ss_conf 999999711799--7999999999999999988554320242247764414999981184-2788999999999999802
Q 000274 1050 LANHFISAGSHH--DEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSR-SETIRSLIVDCIVQMIKSK 1126 (1739)
Q Consensus 1050 l~~hf~~vg~h~--n~~Va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~-~~eVre~IL~cL~qlI~~~ 1126 (1739)
+-+.+.+....+ +..++..|+..|+.++.++.. +.+. .+-..++..|...+.... +.+||...+.|+..++...
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~-~~~~--~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP-EQLQ--DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG-GGTG--GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC-HHHH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999998626788789999999999999981871-5347--67999999999986799998999999999999999999
Q ss_pred CCCCCCCC---HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 68766682---8999999884105159999999999999984101230352498-9999999998236760115999996
Q 000274 1127 VGSIKSGW---RSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFM-DCVNCLIRFANNKTSHRISLKAIAL 1202 (1739)
Q Consensus 1127 ~~~IkSGW---k~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~l~~l~~~~f~-dlI~cL~~F~~q~~~~nISL~AI~l 1202 (1739)
..+. ..| ..+..++.....+++..+...+++++..+...+-..+ ...+. .++..+....+ ..+.++...|+++
T Consensus 206 ~~~~-~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~-~~~~~~~l~~~~~~~~~-~~~~~v~~~a~~~ 282 (462)
T 1ibr_B 206 KANF-DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM-ETYMGPALFAITIEAMK-SDIDEVALQGIEF 282 (462)
T ss_dssp HHHH-TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC-TTTTTTTHHHHHHHHHH-CSSHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_conf 9843-2367898999999985379978999999999999999989999-98888899999999982-8860999999999
Q ss_pred HHHHHHHHHCCC-C-CCCCCCCCCCCC--CCCCCH---HHHCHHHHHHHH-HHHC---CCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 899799863066-8-999888887666--674330---124069999988-5401---8998788999999999999860
Q 000274 1203 LRICEDRLAEGL-I-PGGDLKPIDVET--DATFDV---TEHFWFPMLAGL-SDLT---SDPRPEVRSCALEVLFDLLNER 1271 (1739)
Q Consensus 1203 L~~i~d~L~~~~-~-~~~~~~~~~~~~--~~~~~~---~~~lW~pLL~~L-s~l~---~d~R~EVR~~ALqtLF~iL~~~ 1271 (1739)
+..+++...... . .+.. .+... ...... +..-.+|.+... .+.- .+....+|..|...|-.+....
T Consensus 283 l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~ 359 (462)
T 1ibr_B 283 WSNVCDEEMDLAIEASEAA---EQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359 (462)
T ss_dssp HHHHHHHHHHHHHHHCCTT---CSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCC---CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999998887887601000---0378863035999998766400799999874444444443328899999999999863
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6999977999999996798999866312456566503468-877999999999999999999987479899999993428
Q 000274 1272 GSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWF-RETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKK 1350 (1739)
Q Consensus 1272 G~~f~~~~W~~If~~VLfPIf~~l~~~~~~~~~~~~~~Wl-~eT~~~aL~~lv~Lf~~yf~~l~~~L~~~l~lL~~ci~q 1350 (1739)
|. .++ ..++|.+..... +..|- .+....++..+++-.. -+.+...++.++..+..++..
T Consensus 360 ~~--------~~~-~~~~~~l~~~l~---------~~~~~~r~aal~~l~~l~~~~~--~~~~~~~l~~~~~~l~~~l~d 419 (462)
T 1ibr_B 360 ED--------DIV-PHVLPFIKEHIK---------NPDWRYRDAAVMAFGCILEGPE--PSQLKPLVIQAMPTLIELMKD 419 (462)
T ss_dssp TT--------THH-HHHHHHHHHHTT---------CSSHHHHHHHHHHHHHTSSSSC--TTTTCTTTTTHHHHHHHGGGC
T ss_pred CH--------HHH-HHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHCC
T ss_conf 58--------789-999999999843---------8975899999999999864876--777898899999999999669
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q ss_conf 980378998999999999809999-9766999999999
Q 000274 1351 PDQSVVSISLGALVHLIEVGGHQF-SESDWDTLLKSIR 1387 (1739)
Q Consensus 1351 ~~~~ia~ig~~cL~~Li~~~~~~f-~~~~W~~i~~~~~ 1387 (1739)
++..+...++.+|.++....++.+ ....-..++..+.
T Consensus 420 ~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp SCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 97899999999999999862011465778999999999
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=51.37 Aligned_cols=306 Identities=14% Similarity=0.152 Sum_probs=145.8
Q ss_pred CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 31199999998721111001238899999999997117997999999999999999988554320242247764414999
Q 000274 1022 VFSLQKLVEISYYNMARIRMVWARIWSVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVV 1101 (1739)
Q Consensus 1022 ~FsLqKLvEIa~~Nm~RIrl~Ws~IW~vl~~hf~~vg~h~n~~Va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~ 1101 (1739)
.+.+.-+.+++.. ..|.. +.-+.+.|.+.-++++..||.-|...|-.++...+ ..|+..+..
T Consensus 836 ~~~l~~l~~~g~~------~~~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~-----------~~~lp~ll~ 897 (1230)
T 1u6g_C 836 LLALLSLGEVGHH------IDLSG-QLELKSVILEAFSSPSEEVKSAASYALGSISVGNL-----------PEYLPFVLQ 897 (1230)
T ss_dssp HHHHHHHHHHHHH------SCCCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTH-----------HHHHHHHHH
T ss_pred HHHHHHHHHHCCC------CCCCC-CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH-----------HHHHHHHHH
T ss_conf 9999999986156------78765-64189999998479977899999999687752699-----------988999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 981184278899999999999980268766682----8999999884105159999999999999984101230352498
Q 000274 1102 LIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGW----RSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFM 1177 (1739)
Q Consensus 1102 im~~s~~~eVre~IL~cL~qlI~~~~~~IkSGW----k~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~l~~l~~~~f~ 1177 (1739)
.+... .+.|...+.++.+++...+ ...+ ..|+..|-....+.++.+-..+=+++..++..+...+ +.
T Consensus 898 ~l~~~--~~~~~~~l~al~e~i~~~~---~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~~l----~p 968 (1230)
T 1u6g_C 898 EITSQ--PKRQYLLLHSLKEIISSAS---VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL----LP 968 (1230)
T ss_dssp HHHSC--GGGHHHHHHHHHHHHHSSC---STTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGGT----HH
T ss_pred HHHCC--CHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHH----HH
T ss_conf 87266--0324988999999982387---666776699999999987338304468999988756650676888----89
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHCCCCCHHHH
Q ss_conf 99999999982367601159999968997998630668999888887666674330124069999988540189987889
Q 000274 1178 DCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVR 1257 (1739)
Q Consensus 1178 dlI~cL~~F~~q~~~~nISL~AI~lL~~i~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR 1257 (1739)
.|.++.+ ..+..+--.++. .+... +... ...+..+.-+++..|.....|+.++||
T Consensus 969 ----~l~~~l~-~~~~~~R~~~~~-------~l~~~-~~~~------------~~~~~~~l~~~~~~ll~~l~d~~~~vr 1023 (1230)
T 1u6g_C 969 ----RLKGYLI-SGSSYARSSVVT-------AVKFT-ISDH------------PQPIDPLLKNCIGDFLKTLEDPDLNVR 1023 (1230)
T ss_dssp ----HHTTTSS-SSCHHHHHHHHH-------HTGGG-CCSS------------CCTHHHHHHHHSTTTHHHHSSSSTHHH
T ss_pred ----HHHHHHC-CCCHHHHHHHHH-------HHHHH-HCCC------------CHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf ----9999856-997889999999-------99999-7068------------233589899989999986489858799
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC------CCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999986069999779999999967989998663124------56566-5034688779999999999999999
Q 000274 1258 SCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGK------ESLIS-SEDEWFRETSIHSLQLLCNLFNTFY 1330 (1739)
Q Consensus 1258 ~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIf~~l~~~~~------~~~~~-~~~~Wl~eT~~~aL~~lv~Lf~~yf 1330 (1739)
..|+.+|-.+....+..+.+ .+..+|-+++.......+ ...+. ..+.. -+.+..|...+.+++.+.+
T Consensus 1024 ~~a~~~l~~~~~~~~~~~~~-----~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~-l~~rk~a~~~~~~ll~~~~ 1097 (1230)
T 1u6g_C 1024 RVALVTFNSAAHNKPSLIRD-----LLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDG-LDIRKAAFECMYTLLDSCL 1097 (1230)
T ss_dssp HHHHHHHHHHHHHCGGGTGG-----GHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETH-HHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHCCHHHHHH-----HHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998428576897-----79889899998830268760133058960236774-8999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99987479899999993428980378998999999999809999976699999999998
Q 000274 1331 KEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRDA 1389 (1739)
Q Consensus 1331 ~~l~~~L~~~l~lL~~ci~q~~~~ia~ig~~cL~~Li~~~~~~f~~~~W~~i~~~~~~~ 1389 (1739)
+.+. +..++..+..-..- ++.+.......+.+|+..+.... -..-+.++..+...
T Consensus 1098 ~~i~--~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~ 1152 (1230)
T 1u6g_C 1098 DRLD--IFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPSAV-LQRLDRLVEPLRAT 1152 (1230)
T ss_dssp SSSC--HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCCHHH-HTTTTTTHHHHHHH
T ss_pred HHCC--HHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHH
T ss_conf 7478--99999999804676-68899999999999984087989-99999999999999
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=50.85 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=45.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 18998788999999999999860699997799999999679899986631245656650346887799999999999999
Q 000274 1249 TSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNT 1328 (1739)
Q Consensus 1249 ~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIf~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~Lf~~ 1328 (1739)
..+..++||+.|+..+-++....|..+.+- +..++-+++..+... + .... +.++...++..++..+..
T Consensus 679 l~~~~~~v~~~a~~alg~i~~~~~~~~~p~-----~~~il~~L~~~l~~~-~-----~~~~-~~~~a~~~igrl~~~~~~ 746 (852)
T 4fdd_A 679 LNPEFISVCNNATWAIGEISIQMGIEMQPY-----IPMVLHQLVEIINRP-N-----TPKT-LLENTAITIGRLGYVCPQ 746 (852)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHGGGGGGG-----THHHHHHHHHHHTCS-S-----CCHH-HHHHHHHHHHHHHHHCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCCC-C-----CCCH-HHHHHHHHHHHHHHHCHH
T ss_conf 694206899999999999999711767878-----999999999985799-8-----8720-778899999999986889
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999987479899999993428-9803789989999999998099
Q 000274 1329 FYKEVCFMLPPLLSLLLDCAKK-PDQSVVSISLGALVHLIEVGGH 1372 (1739)
Q Consensus 1329 yf~~l~~~L~~~l~lL~~ci~q-~~~~ia~ig~~cL~~Li~~~~~ 1372 (1739)
.+.+.++.++..++..+.. .+......+..+|..++..|-.
T Consensus 747 ---~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 747 ---EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp ---HHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred ---HHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHH
T ss_conf ---767558999999999865366607999999999999986918
Done!