Query 000275
Match_columns 1739
No_of_seqs 267 out of 410
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:23:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1820 Microtubule-associated 100.0 4.5E-70 9.8E-75 693.7 33.8 770 603-1390 7-793 (815)
2 KOG1820 Microtubule-associated 100.0 4E-56 8.7E-61 566.4 40.0 754 20-818 14-793 (815)
3 PF12348 CLASP_N: CLASP N term 99.9 1.8E-20 4E-25 213.7 19.9 210 283-496 6-227 (228)
4 PF12348 CLASP_N: CLASP N term 99.7 1.2E-16 2.5E-21 182.5 15.7 208 853-1063 7-227 (228)
5 KOG2171 Karyopherin (importin) 99.4 1.5E-08 3.3E-13 132.0 55.6 401 50-487 116-562 (1075)
6 KOG2171 Karyopherin (importin) 99.4 4.8E-07 1E-11 118.4 68.6 517 289-978 8-562 (1075)
7 KOG1824 TATA-binding protein-i 99.3 1.9E-07 4.1E-12 118.4 52.6 876 16-1041 10-1095(1233)
8 KOG2956 CLIP-associating prote 99.0 1.5E-08 3.2E-13 121.4 21.6 370 128-503 102-506 (516)
9 KOG2023 Nuclear transport rece 98.9 3E-05 6.5E-10 96.3 44.7 350 61-488 136-518 (885)
10 KOG2023 Nuclear transport rece 98.8 1.6E-06 3.4E-11 107.2 29.2 590 314-1055 79-704 (885)
11 PLN03200 cellulose synthase-in 98.8 0.0012 2.6E-08 93.8 57.0 608 290-1041 194-860 (2102)
12 KOG1824 TATA-binding protein-i 98.7 0.00017 3.8E-09 92.5 41.3 570 605-1390 9-625 (1233)
13 PLN03200 cellulose synthase-in 98.7 0.012 2.6E-07 84.1 62.0 811 278-1388 8-887 (2102)
14 KOG1242 Protein containing ada 98.6 6.4E-07 1.4E-11 111.5 18.1 305 138-486 27-336 (569)
15 KOG0213 Splicing factor 3b, su 98.5 0.00098 2.1E-08 83.8 40.6 567 336-1039 452-1063(1172)
16 PF01602 Adaptin_N: Adaptin N 98.4 0.0011 2.5E-08 85.2 40.3 376 292-782 11-400 (526)
17 KOG0212 Uncharacterized conser 98.4 0.00041 8.9E-09 85.5 32.1 279 894-1295 166-454 (675)
18 PRK13800 putative oxidoreducta 98.4 2E-05 4.3E-10 107.5 23.6 242 718-1039 622-865 (897)
19 KOG1242 Protein containing ada 98.3 0.00022 4.8E-09 89.5 27.5 309 125-481 131-451 (569)
20 KOG0915 Uncharacterized conser 98.3 3.4E-05 7.3E-10 103.1 20.8 564 404-1051 819-1441(1702)
21 PRK13800 putative oxidoreducta 98.2 9.7E-05 2.1E-09 100.9 24.4 260 695-1037 634-895 (897)
22 KOG0213 Splicing factor 3b, su 98.1 0.037 8E-07 70.4 40.0 337 323-798 797-1152(1172)
23 PF01602 Adaptin_N: Adaptin N 98.0 0.0019 4E-08 83.3 29.9 391 291-792 48-448 (526)
24 PTZ00429 beta-adaptin; Provisi 98.0 0.011 2.4E-07 78.6 35.2 348 57-469 110-541 (746)
25 KOG0211 Protein phosphatase 2A 97.9 0.021 4.6E-07 75.5 36.6 183 857-1048 483-671 (759)
26 COG5181 HSH155 U2 snRNP splice 97.9 0.021 4.5E-07 71.3 33.5 565 139-810 328-972 (975)
27 KOG0212 Uncharacterized conser 97.9 0.0021 4.6E-08 79.5 23.7 392 855-1364 2-410 (675)
28 PRK09687 putative lyase; Provi 97.8 0.002 4.4E-08 76.6 22.6 244 720-1037 26-278 (280)
29 KOG2933 Uncharacterized conser 97.8 0.00011 2.3E-09 85.5 11.1 178 290-469 93-272 (334)
30 KOG2956 CLIP-associating prote 97.8 0.0023 5E-08 78.0 22.5 366 699-1071 81-507 (516)
31 KOG1241 Karyopherin (importin) 97.7 0.4 8.7E-06 62.2 42.4 649 52-933 126-820 (859)
32 KOG1241 Karyopherin (importin) 97.6 0.24 5.3E-06 64.0 37.7 327 615-948 51-461 (859)
33 KOG0211 Protein phosphatase 2A 97.6 0.023 5E-07 75.2 28.4 383 325-794 237-631 (759)
34 KOG1248 Uncharacterized conser 97.5 1 2.3E-05 61.1 46.7 649 314-1057 81-872 (1176)
35 COG5181 HSH155 U2 snRNP splice 97.4 0.09 1.9E-06 65.9 29.4 177 848-1039 687-868 (975)
36 PRK09687 putative lyase; Provi 97.4 0.0018 3.9E-08 77.1 14.1 160 288-472 26-186 (280)
37 PTZ00429 beta-adaptin; Provisi 97.4 0.12 2.5E-06 69.2 31.4 176 855-1041 107-285 (746)
38 PF05004 IFRD: Interferon-rela 97.1 0.023 4.9E-07 68.7 19.9 189 289-477 47-260 (309)
39 PF12755 Vac14_Fab1_bd: Vacuol 96.9 0.0071 1.5E-07 60.7 10.2 92 344-474 5-96 (97)
40 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.01 2.3E-07 59.5 10.4 54 915-968 6-59 (97)
41 KOG1248 Uncharacterized conser 96.4 7 0.00015 53.7 41.0 628 318-1054 217-911 (1176)
42 KOG2933 Uncharacterized conser 96.3 0.022 4.8E-07 66.9 11.0 178 857-1037 92-273 (334)
43 PF02985 HEAT: HEAT repeat; I 96.3 0.005 1.1E-07 48.6 4.0 30 446-475 1-30 (31)
44 PF10508 Proteasom_PSMB: Prote 96.3 1.4 3.1E-05 57.1 28.0 101 371-475 43-149 (503)
45 PF00790 VHS: VHS domain; Int 96.0 0.021 4.5E-07 61.1 8.0 113 860-981 16-134 (140)
46 KOG0915 Uncharacterized conser 95.9 11 0.00023 53.2 33.8 248 721-980 821-1083(1702)
47 PF13513 HEAT_EZ: HEAT-like re 95.9 0.014 3.1E-07 51.9 5.3 55 417-472 1-55 (55)
48 cd03568 VHS_STAM VHS domain fa 95.8 0.066 1.4E-06 57.7 11.1 110 862-980 13-125 (144)
49 PF12717 Cnd1: non-SMC mitotic 95.7 0.065 1.4E-06 59.7 10.9 98 380-481 2-99 (178)
50 cd00020 ARM Armadillo/beta-cat 95.7 0.082 1.8E-06 53.4 10.8 108 365-473 6-119 (120)
51 PF13646 HEAT_2: HEAT repeats; 95.7 0.03 6.5E-07 54.1 7.1 86 1258-1356 1-88 (88)
52 KOG4535 HEAT and armadillo rep 95.7 0.23 5E-06 61.0 15.7 298 20-361 5-331 (728)
53 PF10508 Proteasom_PSMB: Prote 95.7 8.5 0.00018 50.1 31.3 389 729-1243 49-465 (503)
54 smart00288 VHS Domain present 95.6 0.074 1.6E-06 56.5 10.4 111 861-980 12-126 (133)
55 PF13646 HEAT_2: HEAT repeats; 95.6 0.076 1.6E-06 51.3 9.7 86 368-470 1-88 (88)
56 COG5215 KAP95 Karyopherin (imp 95.6 10 0.00023 48.3 41.7 151 336-486 189-369 (858)
57 COG1413 FOG: HEAT repeat [Ener 95.4 1.9 4E-05 52.7 23.1 261 718-1055 44-318 (335)
58 cd03561 VHS VHS domain family; 95.3 0.077 1.7E-06 56.4 9.3 108 862-978 13-126 (133)
59 cd00020 ARM Armadillo/beta-cat 95.3 0.033 7.2E-07 56.3 6.3 108 856-964 10-119 (120)
60 cd03569 VHS_Hrs_Vps27p VHS dom 95.2 0.1 2.2E-06 56.2 9.9 111 861-980 16-129 (142)
61 KOG2032 Uncharacterized conser 94.8 0.64 1.4E-05 58.0 15.9 210 289-501 221-443 (533)
62 PF12460 MMS19_C: RNAPII trans 94.8 1.5 3.3E-05 55.4 20.1 187 295-486 200-405 (415)
63 KOG2032 Uncharacterized conser 94.7 0.34 7.3E-06 60.3 13.5 193 858-1053 222-428 (533)
64 cd03565 VHS_Tom1 VHS domain fa 94.6 0.27 5.9E-06 52.9 11.1 111 862-981 14-131 (141)
65 cd03567 VHS_GGA VHS domain fam 94.5 0.36 7.7E-06 51.8 11.6 99 862-969 14-120 (139)
66 PF05004 IFRD: Interferon-rela 94.5 0.3 6.5E-06 59.3 12.3 194 846-1041 37-257 (309)
67 PF04118 Dopey_N: Dopey, N-ter 94.5 0.53 1.1E-05 56.9 14.2 164 869-1039 71-252 (307)
68 PF12717 Cnd1: non-SMC mitotic 94.3 1.1 2.3E-05 50.1 15.4 111 339-457 2-113 (178)
69 KOG1060 Vesicle coat complex A 94.3 2.7 5.8E-05 55.1 20.2 341 906-1364 45-425 (968)
70 COG5215 KAP95 Karyopherin (imp 93.4 31 0.00068 44.3 27.2 363 360-812 314-692 (858)
71 KOG2259 Uncharacterized conser 93.1 31 0.00066 45.2 26.1 278 128-436 198-515 (823)
72 KOG1087 Cytosolic sorting prot 92.5 0.34 7.3E-06 61.3 8.4 101 860-969 12-116 (470)
73 cd00197 VHS_ENTH_ANTH VHS, ENT 92.3 0.64 1.4E-05 48.0 8.8 75 890-964 32-114 (115)
74 TIGR02270 conserved hypothetic 92.2 1.2 2.7E-05 56.0 12.9 119 326-472 87-205 (410)
75 PF13251 DUF4042: Domain of un 92.1 1.2 2.6E-05 49.9 11.3 135 341-476 2-176 (182)
76 PF02985 HEAT: HEAT repeat; I 91.5 0.23 5E-06 39.2 3.6 30 1014-1043 2-31 (31)
77 KOG0166 Karyopherin (importin) 91.5 2.3 4.9E-05 54.4 14.0 185 289-476 70-268 (514)
78 KOG1061 Vesicle coat complex A 91.3 42 0.00092 44.7 25.1 150 301-456 137-291 (734)
79 KOG1058 Vesicle coat complex C 91.2 6.5 0.00014 51.5 17.4 331 605-1006 24-447 (948)
80 KOG0392 SNF2 family DNA-depend 90.9 1.1 2.4E-05 60.9 10.8 202 300-503 748-961 (1549)
81 PF10274 ParcG: Parkin co-regu 90.7 0.85 1.8E-05 50.9 8.2 124 848-973 34-172 (183)
82 KOG1062 Vesicle coat complex A 90.2 18 0.00039 48.1 20.2 292 326-752 108-419 (866)
83 PF13513 HEAT_EZ: HEAT-like re 89.0 0.4 8.7E-06 42.6 3.4 51 341-391 3-53 (55)
84 KOG1240 Protein kinase contain 89.0 25 0.00054 48.7 20.7 111 686-799 623-745 (1431)
85 KOG1240 Protein kinase contain 88.9 21 0.00045 49.5 19.8 278 617-981 439-745 (1431)
86 cd00197 VHS_ENTH_ANTH VHS, ENT 88.7 2.7 5.9E-05 43.4 9.7 93 294-394 13-114 (115)
87 KOG1060 Vesicle coat complex A 88.4 1.1E+02 0.0023 41.2 25.7 371 60-473 42-457 (968)
88 KOG1059 Vesicle coat complex A 88.3 11 0.00024 49.3 16.2 184 288-483 147-371 (877)
89 COG5064 SRP1 Karyopherin (impo 87.9 13 0.00029 44.7 15.4 164 1162-1356 64-268 (526)
90 PF12460 MMS19_C: RNAPII trans 86.7 1E+02 0.0022 39.2 24.4 193 857-1055 193-407 (415)
91 cd03568 VHS_STAM VHS domain fa 86.6 3.9 8.4E-05 44.3 9.7 74 323-396 35-111 (144)
92 COG5096 Vesicle coat complex, 86.5 8.1 0.00018 51.7 14.3 61 408-475 97-157 (757)
93 COG1413 FOG: HEAT repeat [Ener 86.4 19 0.00041 43.9 16.8 176 289-500 47-237 (335)
94 TIGR02270 conserved hypothetic 86.3 9.4 0.0002 48.3 14.2 137 326-490 55-192 (410)
95 PF12231 Rif1_N: Rap1-interact 85.6 1.1E+02 0.0024 38.4 23.4 313 609-961 1-348 (372)
96 PF14500 MMS19_N: Dos2-interac 85.5 48 0.001 39.6 18.9 138 608-751 6-157 (262)
97 KOG1087 Cytosolic sorting prot 84.9 3.3 7.1E-05 52.7 9.3 97 293-396 13-113 (470)
98 KOG0166 Karyopherin (importin) 84.8 84 0.0018 40.8 21.4 362 855-1267 68-458 (514)
99 PF00790 VHS: VHS domain; Int 84.6 6.1 0.00013 42.4 10.0 75 322-396 39-119 (140)
100 KOG2199 Signal transducing ada 84.4 5.6 0.00012 48.6 10.3 111 862-981 21-134 (462)
101 cd03567 VHS_GGA VHS domain fam 84.2 8.3 0.00018 41.5 10.7 96 294-396 14-117 (139)
102 KOG1061 Vesicle coat complex A 84.1 58 0.0013 43.5 19.9 135 323-466 348-520 (734)
103 smart00288 VHS Domain present 83.6 6.1 0.00013 42.1 9.4 75 322-396 34-112 (133)
104 PF12074 DUF3554: Domain of un 83.5 29 0.00063 42.7 16.7 155 322-479 19-240 (339)
105 KOG4524 Uncharacterized conser 82.8 1.5E+02 0.0032 41.0 22.8 73 334-406 557-630 (1014)
106 PF14500 MMS19_N: Dos2-interac 82.6 1.1E+02 0.0024 36.5 20.3 192 289-490 46-253 (262)
107 cd03569 VHS_Hrs_Vps27p VHS dom 82.2 8.2 0.00018 41.7 9.8 96 294-396 17-115 (142)
108 cd03561 VHS VHS domain family; 82.0 11 0.00025 40.0 10.7 96 294-396 13-113 (133)
109 KOG2259 Uncharacterized conser 81.9 60 0.0013 42.7 18.2 304 364-750 196-514 (823)
110 KOG1020 Sister chromatid cohes 81.9 2.8E+02 0.006 40.3 26.0 134 1208-1341 1025-1178(1692)
111 PF04118 Dopey_N: Dopey, N-ter 81.8 35 0.00075 41.7 15.9 147 296-480 22-173 (307)
112 PF12719 Cnd3: Nuclear condens 80.7 17 0.00037 44.0 12.9 125 72-196 3-142 (298)
113 PF13251 DUF4042: Domain of un 80.3 39 0.00085 38.2 14.5 155 26-196 1-173 (182)
114 PF10274 ParcG: Parkin co-regu 78.1 28 0.0006 39.3 12.3 117 366-482 38-172 (183)
115 cd03565 VHS_Tom1 VHS domain fa 78.0 10 0.00022 40.9 8.8 96 294-396 14-116 (141)
116 PF11640 TAN: Telomere-length 77.8 12 0.00026 40.9 9.5 83 289-379 8-104 (155)
117 cd03572 ENTH_epsin_related ENT 77.8 7.8 0.00017 40.8 7.5 78 319-396 32-120 (122)
118 KOG2025 Chromosome condensatio 76.7 46 0.00099 44.0 15.0 129 1223-1356 54-189 (892)
119 COG5096 Vesicle coat complex, 76.2 63 0.0014 43.8 16.8 166 294-474 28-195 (757)
120 PF05536 Neurochondrin: Neuroc 75.9 37 0.0008 44.7 14.7 175 305-481 77-268 (543)
121 KOG2160 Armadillo/beta-catenin 74.6 69 0.0015 39.5 15.3 181 863-1047 93-288 (342)
122 KOG1967 DNA repair/transcripti 74.3 6.6 0.00014 52.6 7.2 107 290-396 914-1025(1030)
123 KOG1058 Vesicle coat complex C 74.2 3.3E+02 0.0071 36.9 22.3 112 1173-1291 320-431 (948)
124 KOG1077 Vesicle coat complex A 73.8 3.2E+02 0.007 36.7 22.7 326 292-752 81-438 (938)
125 cd03572 ENTH_epsin_related ENT 73.2 17 0.00036 38.4 8.6 75 399-473 34-118 (122)
126 KOG1059 Vesicle coat complex A 72.8 8.7 0.00019 50.2 7.5 92 379-476 120-212 (877)
127 PF12719 Cnd3: Nuclear condens 72.7 46 0.001 40.3 13.6 127 348-475 6-144 (298)
128 KOG1243 Protein kinase [Genera 72.3 11 0.00023 49.6 8.3 129 336-475 306-438 (690)
129 PF12074 DUF3554: Domain of un 71.5 44 0.00096 41.1 13.4 85 894-981 21-113 (339)
130 KOG2025 Chromosome condensatio 70.1 31 0.00068 45.4 11.5 194 849-1056 81-274 (892)
131 PF10363 DUF2435: Protein of u 70.0 30 0.00066 34.7 9.2 81 405-487 5-85 (92)
132 KOG0392 SNF2 family DNA-depend 69.3 23 0.00049 49.2 10.5 171 868-1047 748-931 (1549)
133 KOG1943 Beta-tubulin folding c 66.7 5.4E+02 0.012 36.3 37.3 253 695-998 557-825 (1133)
134 PF13001 Ecm29: Proteasome sta 65.9 4.2E+02 0.009 34.8 31.7 115 358-477 15-137 (501)
135 PF12830 Nipped-B_C: Sister ch 65.1 19 0.0004 40.7 7.5 81 1290-1388 7-87 (187)
136 KOG1062 Vesicle coat complex A 64.1 1.9E+02 0.0042 39.1 16.9 209 857-1072 146-418 (866)
137 KOG2149 Uncharacterized conser 63.2 81 0.0018 39.5 12.8 112 328-439 61-177 (393)
138 PF11640 TAN: Telomere-length 63.2 44 0.00095 36.6 9.8 107 857-963 8-135 (155)
139 KOG0803 Predicted E3 ubiquitin 63.0 1.1E+02 0.0024 44.1 15.5 188 291-478 47-267 (1312)
140 PF10363 DUF2435: Protein of u 62.2 31 0.00067 34.6 7.6 77 1292-1368 4-80 (92)
141 KOG4825 Component of synaptic 61.7 41 0.00089 41.9 9.7 162 658-823 454-638 (666)
142 PF08506 Cse1: Cse1; InterPro 61.4 70 0.0015 40.1 12.3 52 414-469 319-370 (370)
143 KOG1243 Protein kinase [Genera 60.8 58 0.0013 43.2 11.5 77 403-482 330-406 (690)
144 COG5218 YCG1 Chromosome conden 60.3 1E+02 0.0022 40.1 13.0 196 291-501 97-293 (885)
145 PF08389 Xpo1: Exportin 1-like 60.1 58 0.0013 34.3 9.9 127 320-469 21-148 (148)
146 KOG1525 Sister chromatid cohes 59.6 44 0.00096 47.7 10.9 148 757-966 258-406 (1266)
147 KOG1967 DNA repair/transcripti 59.1 18 0.00039 48.7 6.7 122 845-967 898-1026(1030)
148 COG5218 YCG1 Chromosome conden 58.9 1.2E+02 0.0026 39.5 13.3 162 908-1070 104-295 (885)
149 PF12765 Cohesin_HEAT: HEAT re 58.5 9.6 0.00021 32.5 2.8 26 444-469 17-42 (42)
150 PF00514 Arm: Armadillo/beta-c 57.9 15 0.00032 30.7 3.9 29 445-473 12-40 (41)
151 PF12830 Nipped-B_C: Sister ch 57.9 1.1E+02 0.0023 34.7 11.9 113 365-477 7-122 (187)
152 KOG4535 HEAT and armadillo rep 55.8 48 0.001 41.9 9.1 147 610-787 5-178 (728)
153 PF05536 Neurochondrin: Neuroc 54.9 6.5E+02 0.014 33.4 25.6 46 772-817 152-197 (543)
154 KOG0803 Predicted E3 ubiquitin 54.9 76 0.0017 45.5 11.9 116 849-965 38-153 (1312)
155 KOG2149 Uncharacterized conser 54.5 34 0.00074 42.6 7.7 112 856-968 61-173 (393)
156 PF12397 U3snoRNP10: U3 small 54.1 39 0.00084 35.2 7.2 83 1290-1375 5-95 (121)
157 KOG4524 Uncharacterized conser 54.1 23 0.00049 48.1 6.5 65 907-971 560-624 (1014)
158 COG5240 SEC21 Vesicle coat com 53.0 1E+02 0.0022 40.0 11.3 110 78-195 420-553 (898)
159 PF06371 Drf_GBD: Diaphanous G 52.8 29 0.00064 38.5 6.4 88 698-786 92-185 (187)
160 PF10521 DUF2454: Protein of u 52.1 1.6E+02 0.0034 35.6 12.8 137 322-459 116-279 (282)
161 PF11865 DUF3385: Domain of un 51.3 1.2E+02 0.0026 33.5 10.7 146 321-477 6-160 (160)
162 PF08167 RIX1: rRNA processing 51.2 84 0.0018 34.8 9.6 69 289-357 29-100 (165)
163 PF11935 DUF3453: Domain of un 51.1 2.7E+02 0.0059 32.8 14.2 73 334-434 2-74 (239)
164 KOG1822 Uncharacterized conser 49.7 1.2E+02 0.0025 44.6 12.3 223 190-476 24-250 (2067)
165 PLN03076 ARF guanine nucleotid 49.7 2.9E+02 0.0062 41.6 16.6 154 325-478 1182-1380(1780)
166 KOG0168 Putative ubiquitin fus 48.5 2.8E+02 0.0061 37.9 14.6 150 323-476 209-366 (1051)
167 PF04826 Arm_2: Armadillo-like 46.4 2.3E+02 0.0051 33.7 12.8 168 292-464 61-252 (254)
168 KOG1020 Sister chromatid cohes 46.1 1.7E+02 0.0037 42.1 12.8 114 355-473 805-920 (1692)
169 KOG2160 Armadillo/beta-catenin 45.8 2E+02 0.0044 35.6 12.2 95 405-500 126-235 (342)
170 PF05804 KAP: Kinesin-associat 45.4 2.6E+02 0.0056 38.2 14.2 162 309-477 474-652 (708)
171 PF08167 RIX1: rRNA processing 44.7 1.3E+02 0.0028 33.3 9.8 78 401-478 23-101 (165)
172 KOG0414 Chromosome condensatio 44.7 1.4E+02 0.0031 41.9 11.6 110 380-502 975-1099(1251)
173 PF02854 MIF4G: MIF4G domain; 44.4 4.7E+02 0.01 28.8 15.7 149 316-479 9-161 (209)
174 KOG2199 Signal transducing ada 43.9 2E+02 0.0044 35.9 11.6 114 352-467 32-157 (462)
175 KOG1924 RhoA GTPase effector D 43.6 4.5E+02 0.0097 35.7 15.1 29 365-393 334-362 (1102)
176 KOG0414 Chromosome condensatio 43.0 1.7E+02 0.0036 41.3 11.8 66 985-1050 371-437 (1251)
177 PF08623 TIP120: TATA-binding 43.0 84 0.0018 35.1 7.8 118 362-499 5-142 (169)
178 PF12765 Cohesin_HEAT: HEAT re 42.6 34 0.00074 29.2 3.7 33 750-783 10-42 (42)
179 KOG2011 Sister chromatid cohes 41.8 85 0.0018 43.8 9.1 79 590-673 276-356 (1048)
180 PF04826 Arm_2: Armadillo-like 41.7 3.3E+02 0.0072 32.5 13.1 149 327-479 56-210 (254)
181 PF12231 Rif1_N: Rap1-interact 41.5 3.5E+02 0.0076 34.0 14.0 133 909-1041 148-303 (372)
182 PF08064 UME: UME (NUC010) dom 41.4 1.4E+02 0.0031 30.7 8.7 68 417-487 29-96 (107)
183 PF00531 Death: Death domain; 40.9 99 0.0021 29.5 7.2 78 918-1000 3-82 (83)
184 KOG1949 Uncharacterized conser 40.1 2.9E+02 0.0062 37.0 12.6 186 767-1003 182-372 (1005)
185 KOG4653 Uncharacterized conser 39.9 3.7E+02 0.0081 36.9 13.9 140 334-477 736-879 (982)
186 PF08161 NUC173: NUC173 domain 39.5 92 0.002 35.7 7.7 76 410-486 7-82 (198)
187 PF11698 V-ATPase_H_C: V-ATPas 39.2 2.1E+02 0.0045 30.4 9.5 80 884-965 33-115 (119)
188 COG5095 TAF6 Transcription ini 39.1 1.5E+02 0.0033 35.6 9.3 129 361-502 196-340 (450)
189 PF08506 Cse1: Cse1; InterPro 38.7 1.3E+02 0.0028 37.8 9.6 65 970-1035 303-369 (370)
190 PF08767 CRM1_C: CRM1 C termin 37.5 2.4E+02 0.0053 34.7 11.5 65 414-478 131-198 (319)
191 KOG1525 Sister chromatid cohes 37.4 4.4E+02 0.0095 38.3 15.0 214 1168-1390 257-490 (1266)
192 PRK14954 DNA polymerase III su 37.4 5.7E+02 0.012 34.5 15.5 372 895-1326 190-618 (620)
193 PF11698 V-ATPase_H_C: V-ATPas 37.2 57 0.0012 34.4 5.1 61 722-786 48-113 (119)
194 KOG2011 Sister chromatid cohes 37.0 6.9E+02 0.015 35.5 16.2 197 296-502 165-380 (1048)
195 KOG1517 Guanine nucleotide bin 36.4 1.1E+02 0.0023 42.4 8.5 67 410-476 606-673 (1387)
196 PF05804 KAP: Kinesin-associat 36.4 4.4E+02 0.0096 36.1 14.3 163 297-464 222-389 (708)
197 PF10521 DUF2454: Protein of u 35.9 84 0.0018 37.8 7.1 84 414-501 90-176 (282)
198 cd08318 Death_NMPP84 Death dom 35.6 1.1E+02 0.0023 30.4 6.5 65 918-982 9-75 (86)
199 PRK14950 DNA polymerase III su 35.3 1.2E+03 0.027 31.1 18.9 13 744-756 568-580 (585)
200 PF11838 ERAP1_C: ERAP1-like C 35.3 8.6E+02 0.019 29.2 16.9 78 299-379 35-120 (324)
201 KOG1822 Uncharacterized conser 35.3 3.3E+02 0.0072 40.4 13.1 150 326-478 52-210 (2067)
202 KOG2050 Puf family RNA-binding 34.3 6.2E+02 0.013 33.5 14.2 165 322-494 234-412 (652)
203 PF03224 V-ATPase_H_N: V-ATPas 34.2 1.7E+02 0.0036 35.7 9.4 110 370-481 62-186 (312)
204 PF01603 B56: Protein phosphat 32.9 5.1E+02 0.011 33.1 13.6 179 290-468 138-320 (409)
205 PF05918 API5: Apoptosis inhib 32.7 4.6E+02 0.0099 34.8 13.2 126 324-456 58-189 (556)
206 COG3682 Predicted transcriptio 32.7 62 0.0013 34.3 4.5 41 1641-1704 10-50 (123)
207 cd08803 Death_ank3 Death domai 32.0 1E+02 0.0022 30.6 5.6 75 918-997 6-83 (84)
208 cd08317 Death_ank Death domain 31.9 1.6E+02 0.0036 28.8 7.2 74 918-996 6-82 (84)
209 PF08161 NUC173: NUC173 domain 31.4 1.5E+02 0.0033 34.0 7.8 114 913-1027 18-131 (198)
210 KOG2137 Protein kinase [Signal 30.5 5.4E+02 0.012 34.8 13.2 186 290-485 278-469 (700)
211 COG5095 TAF6 Transcription ini 30.3 2E+02 0.0044 34.7 8.5 127 936-1071 197-342 (450)
212 PF12030 DUF3517: Domain of un 29.8 2.3E+02 0.0049 35.3 9.4 28 170-197 240-267 (337)
213 cd01670 Death Death Domain: a 29.3 96 0.0021 29.4 5.0 64 919-982 2-67 (79)
214 PF13001 Ecm29: Proteasome sta 29.3 3.7E+02 0.008 35.3 11.8 109 921-1030 7-120 (501)
215 PF11864 DUF3384: Domain of un 29.1 7.9E+02 0.017 31.9 14.7 159 653-816 187-356 (464)
216 PF08045 CDC14: Cell division 28.3 6.1E+02 0.013 30.5 12.2 88 1277-1365 112-209 (257)
217 COG5116 RPN2 26S proteasome re 27.8 1.8E+02 0.004 37.7 8.1 145 1203-1384 522-674 (926)
218 KOG1078 Vesicle coat complex C 27.5 2.2E+02 0.0048 38.5 9.0 52 141-196 479-531 (865)
219 PF06371 Drf_GBD: Diaphanous G 27.3 74 0.0016 35.3 4.4 90 107-196 90-186 (187)
220 KOG3961 Uncharacterized conser 27.0 1.2E+02 0.0027 34.9 5.8 100 846-948 108-210 (262)
221 cd08306 Death_FADD Fas-associa 26.5 2.7E+02 0.0059 27.5 7.6 65 918-982 4-71 (86)
222 PF12783 Sec7_N: Guanine nucle 26.4 2.8E+02 0.0062 30.5 8.8 102 865-966 34-147 (168)
223 cd00256 VATPase_H VATPase_H, r 25.8 1.5E+02 0.0032 38.1 7.0 125 1228-1358 295-423 (429)
224 KOG4825 Component of synaptic 25.6 6.1E+02 0.013 32.3 11.7 178 290-474 398-597 (666)
225 PF03224 V-ATPase_H_N: V-ATPas 25.6 1.3E+03 0.028 28.1 16.1 155 289-460 109-274 (312)
226 KOG1077 Vesicle coat complex A 25.4 4.5E+02 0.0098 35.4 11.0 102 322-428 326-429 (938)
227 PF08389 Xpo1: Exportin 1-like 24.8 2.9E+02 0.0062 29.0 8.2 66 715-783 80-148 (148)
228 KOG0567 HEAT repeat-containing 24.7 3.6E+02 0.0078 32.4 9.2 85 1259-1356 190-276 (289)
229 smart00005 DEATH DEATH domain, 24.4 2.4E+02 0.0052 27.3 6.9 78 915-997 4-85 (88)
230 cd08050 TAF6 TATA Binding Prot 24.1 8E+02 0.017 30.6 12.9 127 856-1007 181-324 (343)
231 cd06561 AlkD_like A new struct 23.6 7.3E+02 0.016 27.6 11.6 75 1294-1373 108-183 (197)
232 PF11864 DUF3384: Domain of un 23.5 1.7E+03 0.037 28.8 22.9 66 145-212 7-75 (464)
233 cd08804 Death_ank2 Death domai 23.4 2.6E+02 0.0056 27.6 6.8 75 918-997 6-83 (84)
234 smart00185 ARM Armadillo/beta- 23.4 1.1E+02 0.0023 24.8 3.6 27 446-472 13-39 (41)
235 cd03562 CID CID (CTD-Interacti 23.1 5.5E+02 0.012 26.3 9.6 94 369-464 5-98 (114)
236 KOG2935 Ataxin 3/Josephin [Gen 22.9 1.5E+02 0.0032 34.8 5.5 104 1203-1327 104-216 (315)
237 KOG4653 Uncharacterized conser 22.8 1.3E+03 0.029 32.1 14.6 180 293-480 735-924 (982)
238 PF08767 CRM1_C: CRM1 C termin 22.5 8.9E+02 0.019 29.8 12.8 92 343-435 90-197 (319)
239 KOG1949 Uncharacterized conser 22.3 1.8E+03 0.039 30.2 15.3 203 175-457 181-390 (1005)
240 PF02847 MA3: MA3 domain; Int 21.7 8.2E+02 0.018 24.7 10.5 71 363-433 33-109 (113)
241 KOG3380 Actin-related protein 21.7 6.7E+02 0.014 27.6 9.7 105 876-1025 41-150 (152)
242 COG5098 Chromosome condensatio 21.6 5.8E+02 0.012 34.4 10.8 81 933-1049 343-423 (1128)
243 KOG4199 Uncharacterized conser 21.5 1.6E+03 0.035 28.0 13.8 180 295-483 117-322 (461)
244 COG5064 SRP1 Karyopherin (impo 21.0 1.1E+03 0.025 29.2 12.4 182 290-473 76-271 (526)
245 PF03965 Penicillinase_R: Peni 21.0 1.1E+02 0.0025 31.5 4.0 45 1639-1707 5-49 (115)
246 KOG2549 Transcription initiati 20.9 2E+03 0.044 28.8 16.8 196 604-812 210-454 (576)
247 PF05823 Gp-FAR-1: Nematode fa 20.4 1.9E+02 0.0041 31.9 5.7 84 969-1071 6-90 (154)
248 PF04388 Hamartin: Hamartin pr 20.4 4.9E+02 0.011 35.5 10.7 99 1256-1362 39-142 (668)
No 1
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=4.5e-70 Score=693.70 Aligned_cols=770 Identities=26% Similarity=0.301 Sum_probs=650.0
Q ss_pred cHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh-cCCCccchHHHHHHHHHHHHHHHHhcCCCCccc
Q 000275 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCM-LPGWSEKNVQVQQQVIEVINYLAATATKFPKKC 681 (1739)
Q Consensus 603 ~~~i~~~L~~~~WK~Rl~a~e~l~~~v~~~~~~~~~~~~Lvr~l~~-~PgwkesNfqV~~~~leil~~la~~~~~fs~~~ 681 (1739)
+.+....+.++.||.|++++..+..+.+..+..+..++.+++.... .++|++.||||+.-.+.++..-..+... +...
T Consensus 7 ~~~~~~~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~~~~~~-~~~~ 85 (815)
T KOG1820|consen 7 SVGTDSELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKRVNIRD-TKTQ 85 (815)
T ss_pred ccccchhhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhcccccccccC-cchh
Confidence 4455555889999999999999999998876666666777776643 4789999999999998888843221111 2222
Q ss_pred hhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHH
Q 000275 682 VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (1739)
Q Consensus 682 ~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~ 761 (1739)
+-.++ .|+.|.+-...+..+++.+++.....+++..+++.+.++++|++..+++.|+...+.+||+.....+.+++
T Consensus 86 ~~~~i----~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~D~nvr~~~~~l~v~ 161 (815)
T KOG1820|consen 86 SLLRI----GKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLADKNVRSEASKLLVE 161 (815)
T ss_pred HHHHH----HHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccccccccchhhcccchh
Confidence 22333 89999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCC
Q 000275 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841 (1739)
Q Consensus 762 ~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~ 841 (1739)
+.+-.|.++.+...|.++..+++++..|.|.....|+.+.+|...++...|++++.++....|.|+.+...+....+...
T Consensus 162 i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~ 241 (815)
T KOG1820|consen 162 IYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDN 241 (815)
T ss_pred hhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCccc
Confidence 98888999999999999999999999999999999999999999999999999999988888998887665544333445
Q ss_pred CCCCCcccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHH
Q 000275 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA 921 (1739)
Q Consensus 842 ~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~ 921 (1739)
-|++||+||+++||+.|.++|.|++||+|+||||.+.++|+++++.++.+.+|++...++.|++|+|.|++++|++||+.
T Consensus 242 ~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ 321 (815)
T KOG1820|consen 242 FDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILEL 321 (815)
T ss_pred cccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999875579999889999999999999999999999999999
Q ss_pred HHHhcChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHHHHHHHHh
Q 000275 922 VASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1739)
Q Consensus 922 lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wl~~~l 1001 (1739)
||.+||..|.+|++..+|.++.+|+|+|+.+|++++.|+|+|+++++++.+.++|.++|+++ ||+.|.+++.|+.+++
T Consensus 322 ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 322 IAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGK--NPQIKGECLLLLDRKL 399 (815)
T ss_pred HHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999965 7999999999999999
Q ss_pred ccCCC---Cc-chhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCC---
Q 000275 1002 TGLSG---FP-DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074 (1739)
Q Consensus 1002 ~~~~~---~~-~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~--- 1074 (1739)
..+.. .. ....+++.++.+.+|++.|||++|.++++++|+++|++.+.+.+.++++. .+....++.++..
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~---~~~~~~E~~~p~~~~~ 476 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQ---DIKPKEEKLKPLLHFL 476 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc---hhhhhhhhcccccccc
Confidence 99873 22 34555555888999999999999999999999999999999999999987 3444455555532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHH----hh
Q 000275 1075 VSMGPTSKSSSKVPKSASNGVSKH-----GNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE----RM 1145 (1739)
Q Consensus 1075 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~----~~ 1145 (1739)
..+.+++++..+.....+...+.. ....++++..|.+.+...+. ...+ ..++.+.. .+..+++|. ++
T Consensus 477 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~~-~~~~-~~~~~~~~--~~~~~~~~~~~~~~r 552 (815)
T KOG1820|consen 477 AAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANSS-RKIP-EAAEAPKL--QLSLKEQRVVLGTRR 552 (815)
T ss_pred ccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCcccccccc-cCCc-chhhcccc--ccccccchhhhhhhh
Confidence 222223332222111111110000 00001111112221111100 0000 11112212 456788886 56
Q ss_pred hhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHHhccCcch
Q 000275 1146 VVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNT 1225 (1739)
Q Consensus 1146 ~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tlr~~dtN~ 1225 (1739)
.+.+|++..|..+..+. |...+...+...|||.||+.|.++++.++.....+.++..++.|++++|+++||+++|+
T Consensus 553 ~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~lr~~~~~~ 628 (815)
T KOG1820|consen 553 KVSPKTVVAPVDDKKEP----SKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQDLLLEWLVLRFEETNE 628 (815)
T ss_pred ccCccccccchhhhhcc----cccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHHhhhhHHHHHHhhcccH
Confidence 78889999887666665 88899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCCh
Q 000275 1226 TCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNN 1305 (1739)
Q Consensus 1226 ~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~ 1305 (1739)
+++.+.++|+...|+.+...+|.++..|+..|.|++..+.|..+|.+|+.++.|.+....++...++.+++.++++.||.
T Consensus 629 ~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~~~~~~~~~l~~~~~ 708 (815)
T KOG1820|consen 629 ALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSVLMMVPSLREALELKER 708 (815)
T ss_pred HhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccccccchhhHhhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhccCCHHHHhhHHHHH
Q 000275 1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRF 1385 (1739)
Q Consensus 1306 r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k~~g~ls~k~~s~Leer~ 1385 (1739)
++|.||++.+.+++..-|.+...-.+++..|+-...++|..+|+++.+++...|.+.|+.+|++.+.+.+.|+++++.||
T Consensus 709 ~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 788 (815)
T KOG1820|consen 709 EIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWKISILQADTDKSRIEKMF 788 (815)
T ss_pred hhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHHHHHHHhhHHHhhhHHHhc
Confidence 99999999999999999987654566789999999999999999999999999999999999999999999999999999
Q ss_pred HHhHH
Q 000275 1386 KWKVR 1390 (1739)
Q Consensus 1386 kr~~~ 1390 (1739)
++..+
T Consensus 789 ~~~~~ 793 (815)
T KOG1820|consen 789 PKERR 793 (815)
T ss_pred Ccccc
Confidence 98655
No 2
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=4e-56 Score=566.36 Aligned_cols=754 Identities=19% Similarity=0.230 Sum_probs=541.4
Q ss_pred cCcCChhHHHHHHHHHHHHhhhcCCCCchhhhhhhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhh-HHHHHHH
Q 000275 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYA-KEVCDAI 98 (1739)
Q Consensus 20 l~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~~-~~~~~~l 98 (1739)
+..++||.|+++|. .+++|+|+.+|+.+ .++..|...++..+.... ...+-..
T Consensus 14 l~~~~w~~~~~~~~-------------------------ql~~~~~~~~~~~a-~a~~~~~~~s~~~~l~~a~~~~l~~~ 67 (815)
T KOG1820|consen 14 LCSQSWKNRLEAWK-------------------------QLLTDSNVGAQEQA-AALRLLRDASAISALLNAKNIQLLSF 67 (815)
T ss_pred hhhhhhhhhHHHHH-------------------------HHhhhcchhhhHhH-HHHHHHHHhhcchhhhhccceeeccc
Confidence 77777777777665 45678899999999 999999988766444332 2345566
Q ss_pred HHhhhcC-ChhhHHHHHHHHHHHHhhcchhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhh
Q 000275 99 AAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF 177 (1739)
Q Consensus 99 veK~L~~-r~~tk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K~PKvv~a~i~~l~~~l~~FG~k~v~~K~ilk~l~~lf 177 (1739)
.++||.. |+.+.+...++.+.....++.+.+++.+.+.++-|.||.+++++..+..++.+||...++++.++++++.++
T Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~ 147 (815)
T KOG1820|consen 68 GLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLA 147 (815)
T ss_pred hhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcccc
Confidence 7899985 888888899988888888899999999999999999999999999999999999999999999999999999
Q ss_pred cccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCC-CCCcchhhhHHhHhhhhhhcccCCCC
Q 000275 178 DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVGP 256 (1739)
Q Consensus 178 ~~~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~-~~p~R~~Rs~q~~~~~~~~~~~~~~~ 256 (1739)
|+|||.++.++++++|||+|.. .+..++..--+.++.++...+.+.... ....|.+-+.+..........+....
T Consensus 148 ---D~nvr~~~~~l~v~i~r~~G~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~ 223 (815)
T KOG1820|consen 148 ---DKNVRSEASKLLVEIYRWTGDA-SKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEK 223 (815)
T ss_pred ---ccccchhhcccchhhhhhcCCC-cCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccc
Confidence 9999999999999999999974 667776556666777777666664321 11112111111100000000000000
Q ss_pred CCCC--CCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhcCC--CCCCChhHHHHHHHH
Q 000275 257 GPSE--ESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLKK 332 (1739)
Q Consensus 257 ~~~~--~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~pK--i~~~dy~eL~~~Lkk 332 (1739)
.+.. .........+|.||+++||||++|+++ +|.+.|.++|||+|+||||.+.+++++++ +..+.|+.+...++.
T Consensus 224 ~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~-~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki 302 (815)
T KOG1820|consen 224 PERGLQRSKSGFTSPIDNFDLLPRVDILSKITK-NLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKI 302 (815)
T ss_pred cccccccccCCCCCCccccccCchhhhhhhcCh-HHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHH
Confidence 0000 011111223899999999999999995 89999999999999999999999988888 556777788888888
Q ss_pred HhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHh
Q 000275 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (1739)
Q Consensus 333 ~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al 412 (1739)
+..|+|++||++|++||+.||++||..|.+|++.++|.+|++|||||+.+++++++|+|+|+.. +.++++.+.|.+++
T Consensus 303 ~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~l 380 (815)
T KOG1820|consen 303 RLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEAL 380 (815)
T ss_pred hccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999999999999999999999999999999985 79999999999999
Q ss_pred hcCCchhHHHHHHHHHHHHhhCCh-hHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHH
Q 000275 413 KNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDV 491 (1739)
Q Consensus 413 ~~KnP~vk~et~~~l~r~l~~~~~-~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~Ld~~ 491 (1739)
+||||++|.+|+.|+.||+...+. .+....++.++|.++++.+|++++||+||.++++++|+++|++.++.+|.++|+.
T Consensus 381 k~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~ 460 (815)
T KOG1820|consen 381 KGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQ 460 (815)
T ss_pred cCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Confidence 999999999999999999998763 3333566899999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchh-hhhhhhhhcccCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 000275 492 RRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS-FVRKSAASMLSGKRP-VSAAPASKKGGPVKPSAKKDGS 569 (1739)
Q Consensus 492 kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p-~~~~~~~~k~~~~~~~~a~~~~ 569 (1739)
-++.+.|.+...-.....+.++..++. +..+.+. .++...+......++ ++.+|..... ..++...+..+
T Consensus 461 ~~~~~~E~~~p~~~~~~~~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss-~~~~~~~~~~~ 532 (815)
T KOG1820|consen 461 DIKPKEEKLKPLLHFLAAPKEKSSAPD-------PQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSS-ANSSRKIPEAA 532 (815)
T ss_pred hhhhhhhhccccccccccCCCcCCCCC-------ccccccceecccccccCCCCCCCccccCCCcccc-cccccCCcchh
Confidence 566666655431000000000000000 0000000 000000000000000 0000000000 00000000000
Q ss_pred CCccc-ccCCCCCCC-------CC-CCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchhH
Q 000275 570 GKQET-SKLTEAPED-------VE-PSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSV 639 (1739)
Q Consensus 570 ~~~~~-s~~~~~~~~-------~~-~~~~s~ee~e~~~~~l~~~~i~~~L~~~~WK~Rl~a~e~l~~~v~~-~~~~~~~~ 639 (1739)
..+.. -...+.... .. ..-...+|..+.+...++......+++.+.+...++.+.+...-.. ........
T Consensus 533 ~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~ 612 (815)
T KOG1820|consen 533 EAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEPSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQ 612 (815)
T ss_pred hccccccccccchhhhhhhhccCccccccchhhhhcccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHH
Confidence 00000 000000000 00 0112346666667777888889999999999999999999855444 33333445
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC----CCccchhhhccchhhccccch--hhhHHHHHHHHHHHhh
Q 000275 640 EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK----FPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAV 713 (1739)
Q Consensus 640 ~~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~----fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~aE~~ 713 (1739)
++++.|+. -+|.|+|-++..+.++++....+...- -+........+-+..+.|..+ .+..-..+.....+++
T Consensus 613 ~~~l~~~~--lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~ 690 (815)
T KOG1820|consen 613 DLLLEWLV--LRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVL 690 (815)
T ss_pred hhhhHHHH--HHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhc
Confidence 67788876 368999999999999999876654211 111222222233333555544 4555566777788888
Q ss_pred chHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCch
Q 000275 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793 (1739)
Q Consensus 714 ~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~ 793 (1739)
+..-....+++.+ ..|+-.++.+|+..+...+..-|+..+...-+.....- +.......+|..+.+.+..+|.|.|++
T Consensus 691 s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (815)
T KOG1820|consen 691 SVLMMVPSLREAL-ELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIAL-LVKASDGKSSSKVKKTSWKPFDFLPDP 768 (815)
T ss_pred cccccchhhHhhc-cccchhhHHHHhhhhheeeccCCcchhhhHhhhhcccc-cccccchhhhhhhhcccccccccccch
Confidence 8888888888884 79999999999999999999999876555444444333 367788899999999999999999999
Q ss_pred hHhhhhcchHHHHHHHHHHHhcCCC
Q 000275 794 IKGFLADVKPALLSALDAEYEKNPF 818 (1739)
Q Consensus 794 l~~~l~dlkpall~~ie~EF~K~~~ 818 (1739)
++.......+.+.+.++..|.+-..
T Consensus 769 ~~~~~~~~~~~~~s~~~~~~~~~~~ 793 (815)
T KOG1820|consen 769 SWKISILQADTDKSRIEKMFPKERR 793 (815)
T ss_pred HHHHHHHhhHHHhhhHHHhcCcccc
Confidence 9999999999999999999987533
No 3
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.85 E-value=1.8e-20 Score=213.73 Aligned_cols=210 Identities=28% Similarity=0.395 Sum_probs=149.6
Q ss_pred CCCCchhhhhhhhccChHHHHHHHHHHHHhhhcC--CCCCCChhHHHH----HHHHHhccccHHHHHHHHHHHHHHHHHh
Q 000275 283 TPLEKSGFWEGVKATKWSERKDAVAELTKLASTK--RIAPGDFTEVCR----TLKKLITDVNIAVAVEAIQAIGNLARGL 356 (1739)
Q Consensus 283 ~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~p--Ki~~~dy~eL~~----~Lkk~l~DsNv~vv~~A~~~l~~lA~gL 356 (1739)
..+. +.|+++..+.+|++|.+||+.|..++... .-..++|.+.++ .+.+.+.|.|..|+..|+.|++.|+..+
T Consensus 6 ~~~~-~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 6 EEIL-AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp GGS--TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455 47888888999999999999999987644 222233444443 6667888999999999999999999999
Q ss_pred cccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-hhhh-HHHHHHHhhcCCchhHHHHHHHHHHHHhhC
Q 000275 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-LVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (1739)
Q Consensus 357 r~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~-l~~~-~e~i~~al~~KnP~vk~et~~~l~r~l~~~ 434 (1739)
+.+|.+|+..++|++|++++++|..|++++.+||++++.+ ++ ...+ .+.+..+++||||++|.+++.|+..++...
T Consensus 85 ~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~--~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 85 GSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES--CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp GGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT--S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred hHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH--CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999997 45 5666 788889999999999999999999999987
Q ss_pred C--hhHHH--HhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHH
Q 000275 435 S--KAAVL--KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (1739)
Q Consensus 435 ~--~~~~~--~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~Ld~~kk~KI 496 (1739)
+ ...+. ..++.+++.+.++++|++++||++|..++..+++++|++. ..+++.||+..++.+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred cchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 7 33332 2347899999999999999999999999999999999986 566799998777654
No 4
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.70 E-value=1.2e-16 Score=182.55 Aligned_cols=208 Identities=21% Similarity=0.325 Sum_probs=142.6
Q ss_pred cCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccc----hHHHHhhhcchhhHhHHHHHHHHHHHHHHhcCh
Q 000275 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE----LFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (1739)
Q Consensus 853 kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~ge----L~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~ 928 (1739)
.|.+.|-++..+.||+.|.|||+.|..++....+.-.+..+.+ +...+...+.|.|..|+..|+.+++.++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 3455566677899999999999999999985311111111222 223666899999999999999999999999999
Q ss_pred hhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-hhhh-hHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC
Q 000275 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1739)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l~~~-~~~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~~ 1006 (1739)
.|++|+..++|.++++++|+|+.+|++|.+||++++..++ ...+ ++.+...+.+. ||..|.+.+.||...+...+.
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999 5666 66777777755 799999999999999998872
Q ss_pred -Ccc------hhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHH
Q 000275 1007 -FPD------AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALI 1063 (1739)
Q Consensus 1007 -~~~------~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i 1063 (1739)
... ...+++.+..+++|.+++||++|..++..++.++|..+ ...+..|+|..+..+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 111 24466668889999999999999999999999999997 445577877665543
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.5e-08 Score=132.01 Aligned_cols=401 Identities=16% Similarity=0.223 Sum_probs=261.6
Q ss_pred hhhhhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhhHHHHHHHHHhhhc--CChhhHHHHHHHHHHHHhhc---
Q 000275 50 IRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE--- 124 (1739)
Q Consensus 50 ~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~~~~~~~~lveK~L~--~r~~tk~~a~e~~l~~vE~e--- 124 (1739)
|.+...++-.-+++.|..-+|.|+-.+..+.+.-+....-+- .-+-++..+|++ +++ .|-.|...+-.|++.-
T Consensus 116 WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~-~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~ 193 (1075)
T KOG2171|consen 116 WPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL-DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENN 193 (1075)
T ss_pred hHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH-HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccc
Confidence 333333333458999999999999988877766443222222 234567899998 466 7777777666666552
Q ss_pred chh-hHHHHHHHH--------hhccCchhHHHHHHHHHHHHHhhCCCccC--hhHHHhhchhhhccc--ChhHHHHHHHH
Q 000275 125 AVD-VFLDVMEKA--------IKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKGL 191 (1739)
Q Consensus 125 ~~~-~v~e~ll~~--------~~~K~PKvv~a~i~~l~~~l~~FG~k~v~--~K~ilk~l~~lf~~~--dk~VR~ea~~L 191 (1739)
..+ .-+..++|. ...-+-++...++.++.+++..++- .+. +..|++..=++..+. |..+|.-|..+
T Consensus 194 ~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ 272 (1075)
T KOG2171|consen 194 KSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALEF 272 (1075)
T ss_pred hHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 222 223444543 3334455667888888888887774 443 566777777777765 67899999999
Q ss_pred HHHHHHhhCCchhhH--HHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCC-CCCCCCCCCCCC
Q 000275 192 TLELCRWIGKDPVKT--ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGP-GPSEESTADVPP 268 (1739)
Q Consensus 192 ~velyrwlG~~~lk~--~L~~~Lkp~q~keLe~efek~~~~~~p~R~~Rs~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 268 (1739)
++.+-++ -|...|- .+.+.|=++.++....+ ..+ .-..++..++++
T Consensus 273 ivs~~e~-Ap~~~k~~~~~~~~lv~~~l~~mte~------------------------------~~D~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 273 LVSLSEY-APAMCKKLALLGHTLVPVLLAMMTEE------------------------------EDDDEWSNEDDLDEDD 321 (1075)
T ss_pred HHHHHHh-hHHHhhhchhhhccHHHHHHHhcCCc------------------------------ccchhhcccccccccc
Confidence 9999888 2211111 11122222222211100 000 000000011111
Q ss_pred CCCcccc-----------CCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhcc
Q 000275 269 EIDEYEL-----------VDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITD 336 (1739)
Q Consensus 269 ~iDp~dl-----------~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~D 336 (1739)
.-+||.+ +++.-|++.+= +-+...+.|.+|++|+++|-+|-.+.. ..+.-.++...++.+.-.-+.|
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~-~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQVLPPLF-EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND 400 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhhehHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Confidence 1233322 12333443332 345556799999999999999988763 5555556788899999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHH--HHHHHHHHHHHHHHhcCCC------hhhhHH-H
Q 000275 337 VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT--VAESLTQTLQAMHKAGCLN------LVDVVE-D 407 (1739)
Q Consensus 337 sNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~--V~eA~~~aLda~~~~~~~~------l~~~~e-~ 407 (1739)
..-.|--.|+++||.+++-+.+.|.+|.+..+|+.|--..|.=.+ |..++..||+.++.. |.. |+.+++ -
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~~~ 479 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLMEKK 479 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888777666665555 555666777777665 533 455555 3
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhC----CCCHHHHHHHHHHHHHHHHHhChhHHHH
Q 000275 408 VKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN----DGTPEVRDAAFSVLAAIAKSVGMRPLER 483 (1739)
Q Consensus 408 i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~----Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~ 483 (1739)
+...+++.+|.++.++..=++..-.... ..+.++.+.++|.+.+.|. +..-++|-...+|++.+-..||.+.+.+
T Consensus 480 l~~L~~~~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~ 558 (1075)
T KOG2171|consen 480 LLLLLQSSKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLP 558 (1075)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhH
Confidence 3445567789999988887776654332 3345677888998888873 3446777788899999999999877777
Q ss_pred Hhhc
Q 000275 484 SIEK 487 (1739)
Q Consensus 484 ~l~~ 487 (1739)
+.+.
T Consensus 559 ~a~e 562 (1075)
T KOG2171|consen 559 LAEE 562 (1075)
T ss_pred hHHH
Confidence 7654
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=4.8e-07 Score=118.39 Aligned_cols=517 Identities=17% Similarity=0.193 Sum_probs=343.3
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccch-hhh
Q 000275 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (1739)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gLr~~F~~y-~~~ 366 (1739)
.+...+-|+.=.-|++|=+.+..+...++ +...|..++. -+|-.+-++|+=.+-.+..++=+....- ...
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 34556777778889999999988776555 6788888988 8888899999888888887754444333 223
Q ss_pred hHHHHHHH-hccCCHHHHHHHHHHHHHHHHhcC-CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhh
Q 000275 367 LLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGC-LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1739)
Q Consensus 367 ~lp~lLek-lKEKK~~V~eA~~~aLda~~~~~~-~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k 444 (1739)
+-..||+. ++|.+++||.++...+-.++..-- -.-.++++-+..+.++.||+.|+-.+..|..+....+. .+...++
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-~~~~~~~ 158 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN-TLQPHLD 158 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-ccchhHH
Confidence 44444443 699999999999999999998610 02335666677788899999998888887766654432 2335678
Q ss_pred hhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC-hhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000275 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1739)
Q Consensus 445 ~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~G-e~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1739)
.+.+.+.++++|.+..||-+|..+++++..... ++...+....+=|.-..-..+.+.-
T Consensus 159 ~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~--------------------- 217 (1075)
T KOG2171|consen 159 DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD--------------------- 217 (1075)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc---------------------
Confidence 899999999999999999999999999988774 2222222211111111111111000
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCc
Q 000275 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1739)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~ 603 (1739)
..++.
T Consensus 218 ------------------------------------------------------------------~d~~~--------- 222 (1075)
T KOG2171|consen 218 ------------------------------------------------------------------GDDDA--------- 222 (1075)
T ss_pred ------------------------------------------------------------------cchHH---------
Confidence 00000
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC-------
Q 000275 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD-QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT------- 675 (1739)
Q Consensus 604 ~~i~~~L~~~~WK~Rl~a~e~l~~~v~~~~~~~-~~~~~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~------- 675 (1739)
=-.+++.|.+.++.....- ...+-++.+.-.--+=+|-|=-+....|+++..+++.++
T Consensus 223 --------------a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~ 288 (1075)
T KOG2171|consen 223 --------------AKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLA 288 (1075)
T ss_pred --------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhch
Confidence 0012222222222211111 111112221111112255555677778888888877643
Q ss_pred CCCccchhhhccchhhcccc--------------chhhhHHHHHHHHHHHhhchHhHHHHHHHh---hhhcCChhhHHHH
Q 000275 676 KFPKKCVVLCLLGISERVAD--------------IKTRAHAMKCLTTFSEAVGPGFIFERLYKI---MKDHKNPKVLSEG 738 (1739)
Q Consensus 676 ~fs~~~~~~~l~~lveKlgD--------------~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~---~~~~KnPKv~~e~ 738 (1739)
.+..+.+..++.-.+|-..| --....|.++|-.++=..||+.|+..+++. +..+-++|-|..+
T Consensus 289 ~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 289 LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence 24445555555555555555 113567788888899999999988877664 3578899999999
Q ss_pred HHHHHHHHHHhccCc-cchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh-hcchHHHHHHHHHHHhcC
Q 000275 739 ILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKN 816 (1739)
Q Consensus 739 l~wl~~~i~eFG~~~-l~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l-~dlkpall~~ie~EF~K~ 816 (1739)
|.-++.+-+-.+=.. =++-.+++.+... |.++.|-||-+|.+.+|-|---++|.+-.+. +-+.|++...+|..
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~-l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~---- 443 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNG-LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST---- 443 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc----
Confidence 999999887443111 1566888888884 9999999999999999999999999886666 66777777766643
Q ss_pred CCCCCCCCccccccccCcCCCCCCCCCCCCcccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHc-ccCCCCCCccc
Q 000275 817 PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-NKRIQPAGTGE 895 (1739)
Q Consensus 817 ~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~a-nkrI~p~~~ge 895 (1739)
++ =++-.-|--.+-...+++ +.-|.|=+ -.
T Consensus 444 --~~----------------------------------------------~rV~ahAa~al~nf~E~~~~~~l~pYL-d~ 474 (1075)
T KOG2171|consen 444 --QN----------------------------------------------VRVQAHAAAALVNFSEECDKSILEPYL-DG 474 (1075)
T ss_pred --Cc----------------------------------------------hHHHHHHHHHHHHHHHhCcHHHHHHHH-HH
Confidence 11 112222222222233332 23355543 55
Q ss_pred hHHHHhhhc-chhhHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHhcc----CchhHHHHHHHHHHHHHHhcchh
Q 000275 896 LFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD----NKKHMRECTLTVLDAWLAAVHLD 970 (1739)
Q Consensus 896 L~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D----~K~~vR~aa~~alda~~~~~gl~ 970 (1739)
|+.-+=.+| .-+++.++.++++.|+.+|.|++.+|.+|...++|-+...|.. ....+|...++|+..+..++|=+
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence 666333444 5667778889999999999999999999999999998888764 44688899999999999999988
Q ss_pred hhhHHHHH
Q 000275 971 KMVPYVTT 978 (1739)
Q Consensus 971 ~~~~~i~~ 978 (1739)
.|.|.-.+
T Consensus 555 ~F~~~a~e 562 (1075)
T KOG2171|consen 555 KFLPLAEE 562 (1075)
T ss_pred hhhHhHHH
Confidence 88875333
No 7
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.33 E-value=1.9e-07 Score=118.43 Aligned_cols=876 Identities=18% Similarity=0.213 Sum_probs=456.6
Q ss_pred cccccCcCChhHHHHHHHHHHHHhhh----cCCCCchhhhhhhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhh
Q 000275 16 WEDRLLHKNWKVRNEANIDLAALCDS----ITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYA 91 (1739)
Q Consensus 16 l~erl~hK~WKaRl~ayeel~~~f~~----~~d~~d~~~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~~ 91 (1739)
|-|+..++.=-=|--|-.+|.+..+. +++++ +.+....+-|.+.|+|--+|.-|+.++--++.+-.. ...
T Consensus 10 LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dS---e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke---~~l 83 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDS---ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE---DQL 83 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccc---hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH---HHH
Confidence 44555555555677777777776652 22222 233334455789999999999999998666644322 124
Q ss_pred HHHHHHHHHhhhcCChhhHH-HHHHHHHHHHhhc-c-----hhhHHHHHHHHhhccCch------hHHHHHHHHHHHHHh
Q 000275 92 KEVCDAIAAKCLTGRPKTVE-KAQAVFMLWVELE-A-----VDVFLDVMEKAIKNKVAK------AVVPAIDVMFQALSE 158 (1739)
Q Consensus 92 ~~~~~~lveK~L~~r~~tk~-~a~e~~l~~vE~e-~-----~~~v~e~ll~~~~~K~PK------vv~a~i~~l~~~l~~ 158 (1739)
+.++..+..+.++|+-..+. -|+...+...++- + .-.|+.-+.+-+..-+-| +...++..|...+..
T Consensus 84 e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 84 ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 44555566666666544444 3445555555553 1 135667777777777777 899999999999999
Q ss_pred hCCCccC-hhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhH---HHhhhch-HHHHHHHHHHHHhc------
Q 000275 159 FGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT---ILFEKMR-DTMKKELEVELVNV------ 227 (1739)
Q Consensus 159 FG~k~v~-~K~ilk~l~~lf~~~dk~VR~ea~~L~velyrwlG~~~lk~---~L~~~Lk-p~q~keLe~efek~------ 227 (1739)
||.=..+ =+.|++.+..-+...-..||.-|...++.+-.+.+.++... .|.++|- +.|..++...+.-+
T Consensus 164 ~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ 243 (1233)
T KOG1824|consen 164 FGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQ 243 (1233)
T ss_pred hcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 9985444 34588888888999999999999999998888877543222 2223332 23433433333221
Q ss_pred CCC--------CCCcc--hhhhHH-h---Hhh----hhhh----cccCCC---------------CCCCCCCCCCCCCCC
Q 000275 228 SGT--------ARPTR--KIRAEQ-D---KEL----GQEL----ISEDVG---------------PGPSEESTADVPPEI 270 (1739)
Q Consensus 228 ~~~--------~~p~R--~~Rs~q-~---~~~----~~~~----~~~~~~---------------~~~~~~~~~~~~~~i 270 (1739)
.|. ..|-- |.-+.+ + .++ .-+. .+.... =+++=..+. ++|-
T Consensus 244 ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~--~eDe 321 (1233)
T KOG1824|consen 244 AGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDT--EEDE 321 (1233)
T ss_pred hcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCC--ccch
Confidence 111 01100 110000 0 000 0000 000000 000000000 0111
Q ss_pred CccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHH
Q 000275 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAI 349 (1739)
Q Consensus 271 Dp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l 349 (1739)
|...+-|..| .+ .++-|+.=++-.||.|++|..-+..+++ ..-.-+.=|-.+...|-.+++|---+|.+-.+...
T Consensus 322 d~~~~ed~eD-de---~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~y 397 (1233)
T KOG1824|consen 322 DAMFLEDEED-DE---QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAY 397 (1233)
T ss_pred hhhhhhcccc-ch---hccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHH
Confidence 1111111111 00 0244666677889999999999988654 33333444777888888888866666666666555
Q ss_pred HHHHHHhc----------------cccc-----chhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc----CCChhhh
Q 000275 350 GNLARGLR----------------THFS-----GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLVDV 404 (1739)
Q Consensus 350 ~~lA~gLr----------------~~F~-----~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~----~~~l~~~ 404 (1739)
-.+-+--| .+|. .....++..+=..++||+..-+.....-|..+.... .-+++.+
T Consensus 398 i~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~sl 477 (1233)
T KOG1824|consen 398 IALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSL 477 (1233)
T ss_pred HHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhccccc
Confidence 44443322 1122 223445666666788888765555555555554431 1235566
Q ss_pred HHHHHHHhhcCC--chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhh----------------------------
Q 000275 405 VEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---------------------------- 454 (1739)
Q Consensus 405 ~e~i~~al~~Kn--P~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l---------------------------- 454 (1739)
+..|.-.+.+|+ .+.|.+.+.|+.-.+..+++..+-..++.+.|+++.++
T Consensus 478 vpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~ 557 (1233)
T KOG1824|consen 478 VPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPP 557 (1233)
T ss_pred chhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCC
Confidence 777888888888 68999999999999987765554444333444332221
Q ss_pred ----------------------CCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCC
Q 000275 455 ----------------------NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTS 512 (1739)
Q Consensus 455 ----------------------~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~ 512 (1739)
+|++.+||++|..|+|-++..+|. .+...+...=+.-.+++.+-+-..
T Consensus 558 ~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD-~l~~eL~~~L~il~eRl~nEiTRl--------- 627 (1233)
T KOG1824|consen 558 SSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD-FLGNELPRTLPILLERLGNEITRL--------- 627 (1233)
T ss_pred ccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHhchhHHH---------
Confidence 788888888888888888888882 233333222222222222111000
Q ss_pred CccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCH-
Q 000275 513 SARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL- 591 (1739)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~- 591 (1739)
++++.- .... ..+. ...+++
T Consensus 628 -------------------~AvkAl--t~Ia-----------------------------------~S~l---~i~l~~~ 648 (1233)
T KOG1824|consen 628 -------------------TAVKAL--TLIA-----------------------------------MSPL---DIDLSPV 648 (1233)
T ss_pred -------------------HHHHHH--HHHH-----------------------------------hccc---eeehhhh
Confidence 000000 0000 0000 001110
Q ss_pred -HHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCC-CccchHHHHHHHHHHHHH
Q 000275 592 -EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQVQQQVIEVINY 669 (1739)
Q Consensus 592 -ee~e~~~~~l~~~~i~~~L~~~~WK~Rl~a~e~l~~~v~~~~~~~~~~~~Lvr~l~~~Pg-wkesNfqV~~~~leil~~ 669 (1739)
.++- +++..-+....-+-|++-+..+.+.++...... +.+.+=-.|...|+ ..||-.+|-+..+.+++.
T Consensus 649 l~~il--------~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~-~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~t 719 (1233)
T KOG1824|consen 649 LTEIL--------PELASFLRKNQRALRLATLTALDKLVKNYSDSI-PAELLEAVLVELPPLISESDLHVTQLAVAFLTT 719 (1233)
T ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 1111 233344444445556665555555555532221 23333334445566 488988988888888888
Q ss_pred HHHhcCCCCccchhhhccch-------------------------------------hhccccchhhhH-----------
Q 000275 670 LAATATKFPKKCVVLCLLGI-------------------------------------SERVADIKTRAH----------- 701 (1739)
Q Consensus 670 la~~~~~fs~~~~~~~l~~l-------------------------------------veKlgD~K~r~~----------- 701 (1739)
++...+..--..-..+++.+ ++.+..++-...
T Consensus 720 l~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~s 799 (1233)
T KOG1824|consen 720 LAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYS 799 (1233)
T ss_pred HHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHH
Confidence 77643321000001111111 111111110000
Q ss_pred HHHHHHHHHHhhc--hHhHHHHHHH-hhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHH
Q 000275 702 AMKCLTTFSEAVG--PGFIFERLYK-IMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778 (1739)
Q Consensus 702 a~e~L~~~aE~~~--~~~V~~~l~~-~~~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~~~k~~~l~~sN~~VR~a 778 (1739)
...|.-+++++++ -.-+..++.. ....+-|-.++.=|+.-+++.=..++. ..-..+-+.+-++ |+|+|..|+.|
T Consensus 800 iA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~--s~~~e~~~~iiea-f~sp~edvksA 876 (1233)
T KOG1824|consen 800 IAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL--SPQNELKDTIIEA-FNSPSEDVKSA 876 (1233)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC--CcchhhHHHHHHH-cCCChHHHHHH
Confidence 0112222223332 1122222222 221122333333333333332222222 2223444455666 99999999999
Q ss_pred HHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccc------c---cccCcCCCCCCCCCCCCccc
Q 000275 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV------R---ASESTSSVSSGGSDGLPRED 849 (1739)
Q Consensus 779 Ai~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~------r---~~~~~~~~~~~~~d~lprvD 849 (1739)
|--.||.+-- |. +-.|+ |-++.+|+.+ |.|+- + ..++ .+-..|-+|
T Consensus 877 As~ALGsl~v--gn-l~~yL----pfil~qi~sq-----------pk~QyLLLhSlkevi~~~s-------vd~~~~~v~ 931 (1233)
T KOG1824|consen 877 ASYALGSLAV--GN-LPKYL----PFILEQIESQ-----------PKRQYLLLHSLKEVIVSAS-------VDGLKPYVE 931 (1233)
T ss_pred HHHHhhhhhc--Cc-hHhHH----HHHHHHHhcc-----------hHhHHHHHHHHHHHHHHhc-------cchhhhhHH
Confidence 9999998753 32 23333 4455555543 22210 0 0000 000111111
Q ss_pred ccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc--chhhHhHHHHHHHHHHHHHHhcC
Q 000275 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKNLVMATLITLGAVASAMG 927 (1739)
Q Consensus 850 Is~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl--~DsNk~lv~~al~ii~~lA~amG 927 (1739)
+|=.-|.+.++...==+|.=--|=+.+++ .|.| ..|...|+.++ .++|-.....+ .+--.-+-=-
T Consensus 932 ---~IW~lL~k~cE~~eegtR~vvAECLGkL~-----l~ep---esLlpkL~~~~~S~a~~~rs~vvs--avKfsisd~p 998 (1233)
T KOG1824|consen 932 ---KIWALLFKHCECAEEGTRNVVAECLGKLV-----LIEP---ESLLPKLKLLLRSEASNTRSSVVS--AVKFSISDQP 998 (1233)
T ss_pred ---HHHHHHHHhcccchhhhHHHHHHHhhhHH-----hCCh---HHHHHHHHHHhcCCCcchhhhhhh--eeeeeecCCC
Confidence 12222444555444333444334444443 1233 56999999988 56665443321 1111111113
Q ss_pred hhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--hhhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCC
Q 000275 928 PAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (1739)
Q Consensus 928 ~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~ 1005 (1739)
++...+.+..+..++..|.|.-..||..|+.+++.++--=. ...++|++...|-+.. ..|+|+..=.. +.
T Consensus 999 ~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eT---kvrkelIreVe-----MG 1070 (1233)
T KOG1824|consen 999 QPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSET---KVRKELIREVE-----MG 1070 (1233)
T ss_pred CccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhh---hhhHhhhhhhc-----cc
Confidence 46778899999999999999999999999999998764322 3556666666665432 25666653321 11
Q ss_pred CCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000275 1006 GFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1739)
Q Consensus 1006 ~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1739)
| +.+--|-.-|+||+|.+++-+++-
T Consensus 1071 ----------P-FKH~VDdgLd~RKaaFEcmytLLd 1095 (1233)
T KOG1824|consen 1071 ----------P-FKHTVDDGLDLRKAAFECMYTLLD 1095 (1233)
T ss_pred ----------C-ccccccchHHHHHHHHHHHHHHHH
Confidence 1 233457788999999999887754
No 8
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=99.03 E-value=1.5e-08 Score=121.44 Aligned_cols=370 Identities=17% Similarity=0.188 Sum_probs=245.7
Q ss_pred hHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCc--cChhH----HHhhchhhhcccCh-hHHHHHHHHHHHHHHhhC
Q 000275 128 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI--IPPKR----ILKMLPELFDHQDQ-NVRASSKGLTLELCRWIG 200 (1739)
Q Consensus 128 ~v~e~ll~~~~~K~PKvv~a~i~~l~~~l~~FG~k~--v~~K~----ilk~l~~lf~~~dk-~VR~ea~~L~velyrwlG 200 (1739)
.+.+.+-.-..+-.||-+..-...++....+|-... ...++ +-|+.|-.|.-..- .+-...-..+.+++--.-
T Consensus 102 ~~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~s~~t~~~~~s~rkm~~~~~d~~~~~l~~~~v~s~l~~~~~~n~ 181 (516)
T KOG2956|consen 102 KVCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGTSPNTKETKAAIRKMFPWMFDPRIENLLTPHVESSLCSLFALNN 181 (516)
T ss_pred HHHHHHhCHHHhcCCccccchhhhhhcccccccccCCCCCCCcchhhhhhccccccCchhhccccHHHHHHHHHHHHHHh
Confidence 445555555555679999999999999998876543 22333 55555555554332 233344445555555455
Q ss_pred CchhhHHHhhhchHHHHHHHHHHHHhcC--CCCCCcchhhhHHhHh----------hhhhhcccCCCCCCCCCCCC----
Q 000275 201 KDPVKTILFEKMRDTMKKELEVELVNVS--GTARPTRKIRAEQDKE----------LGQELISEDVGPGPSEESTA---- 264 (1739)
Q Consensus 201 ~~~lk~~L~~~Lkp~q~keLe~efek~~--~~~~p~R~~Rs~q~~~----------~~~~~~~~~~~~~~~~~~~~---- 264 (1739)
.+ + +.+++.+.|.+..---+-.+... ++.++.+-.+...... ...+........ .+.+...
T Consensus 182 a~-f-ss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a~~e~~~~~~n~~~~~~~~P~~~~~~~~~~~-~~~~~~~~~n~ 258 (516)
T KOG2956|consen 182 AD-F-SSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSAEKERFDSSNNKPSLPLSPPEEEKPGLGSTK-VNPEELRLSNE 258 (516)
T ss_pred hc-h-HhhhhccChhhhhhHHHHHHhhCcCCCCCCchhhhcccccccccccccCCChhhcccCCCccc-cCccccccccc
Confidence 44 5 45668888876432222222222 2223322111110000 000000000000 0000000
Q ss_pred ------CCCCC-CCccccCCccccc-CCCCchhhhhhhhc-cChHHHHHHHHHHHHhhhcCCC--CCCChhHHHHHHHHH
Q 000275 265 ------DVPPE-IDEYELVDPVDIL-TPLEKSGFWEGVKA-TKWSERKDAVAELTKLASTKRI--APGDFTEVCRTLKKL 333 (1739)
Q Consensus 265 ------~~~~~-iDp~dl~~~vdIl-~klpk~~f~~~l~s-~KWkeRkEaLe~l~~l~~~pKi--~~~dy~eL~~~Lkk~ 333 (1739)
.+..- -|+.|-..|..+. +.++ .+...++.. -+=.+|++||.+|..++-..-+ ....|++|.-.+=.+
T Consensus 259 ~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v-~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~Ev 337 (516)
T KOG2956|consen 259 TERLSRLEEYSTDDSMDQLTPNSVDQSALV-ADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEV 337 (516)
T ss_pred hhhhhhchhhccCcchhhCCCCCcchhHHH-HHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH
Confidence 00000 1223333344432 2333 355666654 4889999999999987644333 345699999999999
Q ss_pred hcc-ccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHh
Q 000275 334 ITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (1739)
Q Consensus 334 l~D-sNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al 412 (1739)
++| .+-..-.+|+++|+.+.+.-...|..|..+.+..+|+.-||.-..|...+.+++.....+ .....++.-|...+
T Consensus 338 L~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las--~~P~~~I~~i~~~I 415 (516)
T KOG2956|consen 338 LSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS--HLPLQCIVNISPLI 415 (516)
T ss_pred HccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh--hCchhHHHHHhhHH
Confidence 998 899999999999999999999999999999999999999999887766666655555543 23344566666666
Q ss_pred hcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHH
Q 000275 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492 (1739)
Q Consensus 413 ~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~Ld~~k 492 (1739)
.+---+.-.-+++.++|.++..+...+..++.+++|.++++.+-....||++|.-||.++...+|++.|.|+|++|...|
T Consensus 416 lt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk 495 (516)
T KOG2956|consen 416 LTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSK 495 (516)
T ss_pred hcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHH
Confidence 66555555678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 000275 493 RNKLSEMIAGS 503 (1739)
Q Consensus 493 k~KI~e~~~~~ 503 (1739)
++-|+=|++.+
T Consensus 496 ~~LlqlYinRa 506 (516)
T KOG2956|consen 496 LNLLQLYINRA 506 (516)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=3e-05 Score=96.27 Aligned_cols=350 Identities=20% Similarity=0.258 Sum_probs=218.8
Q ss_pred cCCCCH-HHHHHHHHHHHHHHHHcChhhhhh-hHHHHHHHHHhhhc----CChhhHHHHHHHHHHHHhhcc------hhh
Q 000275 61 VADSNA-PVQDKALDALIAYLKAADADAGRY-AKEVCDAIAAKCLT----GRPKTVEKAQAVFMLWVELEA------VDV 128 (1739)
Q Consensus 61 v~DsN~-~aqek~leal~~~l~~a~~~~~~~-~~~~~~~lveK~L~----~r~~tk~~a~e~~l~~vE~e~------~~~ 128 (1739)
+-|++. ..||-++.||....+-+....-+- ....+..++-|-|- .-|+.+..|+.|+-.|+=+-. .+.
T Consensus 136 ~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~ 215 (885)
T KOG2023|consen 136 LLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDK 215 (885)
T ss_pred HhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHH
Confidence 556665 678999999988877653211110 11234444555442 479999999999998885532 245
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHhhCC-CccC-hhHHHhhchhhhcccChhHHHHHHHHHHHHHHh-hCCchhh
Q 000275 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA-KIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPVK 205 (1739)
Q Consensus 129 v~e~ll~~~~~K~PKvv~a~i~~l~~~l~~FG~-k~v~-~K~ilk~l~~lf~~~dk~VR~ea~~L~velyrw-lG~~~lk 205 (1739)
++|.+..-.+.-+|-|...-..++.-+ -+|-+ +.+| +..|++++-..-.+.|.+|-=||-.+-..+.-- +-+..++
T Consensus 216 Fle~lFalanD~~~eVRk~vC~alv~L-levr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~ 294 (885)
T KOG2023|consen 216 FLEILFALANDEDPEVRKNVCRALVFL-LEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQ 294 (885)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHH-HHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHH
Confidence 555554444555665544444444333 34555 6665 788999999999999999998888775444311 1223455
Q ss_pred HHHhhhchHHHHHH-----HHHHHHh-cCC---------CCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 000275 206 TILFEKMRDTMKKE-----LEVELVN-VSG---------TARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEI 270 (1739)
Q Consensus 206 ~~L~~~Lkp~q~ke-----Le~efek-~~~---------~~~p~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (1739)
++| ++|=|+.+.- .+--.-+ .+. ..+| |+-++.+. +.+...+ +++++-
T Consensus 295 p~l-~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkP-Rfhksk~~----------~~~~~~~-----~eDddd 357 (885)
T KOG2023|consen 295 PYL-DKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKP-RFHKSKEH----------GNGEDAD-----DEDDDD 357 (885)
T ss_pred HHH-HHHHHHHHccCccccccHHHhcCccccccCCchhhhccc-hhhhchhc----------cCccccc-----cccccc
Confidence 554 5666666532 1111111 111 1233 55554432 1111111 111111
Q ss_pred CccccCCcccccCCCCchhhhhhhhccChHHHH---HHHHHHHHhhhcCCCCCCChhHHHHHHHHHhccccHHHHHHHHH
Q 000275 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERK---DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347 (1739)
Q Consensus 271 Dp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRk---EaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~ 347 (1739)
|.+| +.=.-..|--|| .+|+-|..+.... =.--++..||..|..-+=.|--.++=
T Consensus 358 De~D-----------------DdD~~~dWNLRkCSAAaLDVLanvf~~e-----lL~~l~PlLk~~L~~~~W~vrEagvL 415 (885)
T KOG2023|consen 358 DEDD-----------------DDDAFSDWNLRKCSAAALDVLANVFGDE-----LLPILLPLLKEHLSSEEWKVREAGVL 415 (885)
T ss_pred cccc-----------------cccccccccHhhccHHHHHHHHHhhHHH-----HHHHHHHHHHHHcCcchhhhhhhhHH
Confidence 1111 111224688888 4555444332111 13446778888888777788888889
Q ss_pred HHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHH
Q 000275 348 AIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427 (1739)
Q Consensus 348 ~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l 427 (1739)
.+|+||.|=.++|.+|..-++|-++..+-|||+-||. + +|.+|......+.
T Consensus 416 AlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRs--------I---TCWTLsRys~wv~------------------ 466 (885)
T KOG2023|consen 416 ALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRS--------I---TCWTLSRYSKWVV------------------ 466 (885)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHhccCccceee--------e---eeeeHhhhhhhHh------------------
Confidence 9999999999999999999999999999999999984 2 3777765443322
Q ss_pred HHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcC
Q 000275 428 TFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1739)
Q Consensus 428 ~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~L 488 (1739)
+.. + .++++.++..+.+.+=|++..|.+||+.+++++---.|++ +.+|++.+
T Consensus 467 ----~~~-~---~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~I 518 (885)
T KOG2023|consen 467 ----QDS-R---DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYI 518 (885)
T ss_pred ----cCC-h---HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHH
Confidence 211 1 2345777888889999999999999999999999999976 66787754
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.6e-06 Score=107.18 Aligned_cols=590 Identities=19% Similarity=0.187 Sum_probs=343.8
Q ss_pred hcCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHH
Q 000275 314 STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAM 393 (1739)
Q Consensus 314 ~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~ 393 (1739)
..+.+.+.+.+=+=+.+-+-|+|++-.+-++...+|+.|+..=+ -.+-..++|.+.+-+--.--+..|-+..||.-+
T Consensus 79 ~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~---~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KI 155 (885)
T KOG2023|consen 79 HYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGG---LQHWPELLPQLCELLDSPDYNTCEGAFGALQKI 155 (885)
T ss_pred cccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccc---cccchhHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 34556555444455677777889999998888888888875432 233478899999988888889999999999888
Q ss_pred HHh---------cCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHH
Q 000275 394 HKA---------GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDA 464 (1739)
Q Consensus 394 ~~~---------~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~a 464 (1739)
++- ..-+|+-+++.++.+.+|.+|.+|+.++.-+...+-..+.+-. --+..++..+..+-+|.+++||+.
T Consensus 156 cEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~-~~iD~Fle~lFalanD~~~eVRk~ 234 (885)
T KOG2023|consen 156 CEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALY-VHIDKFLEILFALANDEDPEVRKN 234 (885)
T ss_pred HhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHH-HHHHHHHHHHHHHccCCCHHHHHH
Confidence 763 0134667888999999999999999999988776654444332 334778999999999999999999
Q ss_pred HHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccC
Q 000275 465 AFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 544 (1739)
Q Consensus 465 a~~~l~~l~k~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (1739)
-|.+|.-+.-.--++ +.+++. .|.||+=......-.. + +-++.+= =-+. +
T Consensus 235 vC~alv~Llevr~dk-l~phl~--------~IveyML~~tqd~dE~-----V--------ALEACEF------wla~-a- 284 (885)
T KOG2023|consen 235 VCRALVFLLEVRPDK-LVPHLD--------NIVEYMLQRTQDVDEN-----V--------ALEACEF------WLAL-A- 284 (885)
T ss_pred HHHHHHHHHHhcHHh-cccchH--------HHHHHHHHHccCcchh-----H--------HHHHHHH------HHHH-h-
Confidence 999998877554332 444443 4556652210000000 0 0000000 0000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccccc-CC-CCCCCCCCCCCCHHHHHHHH---hccCcHhHHHhhhhccHHHHH
Q 000275 545 KRPVSAAPASKKGGPVKPSAKKDGSGKQETSK-LT-EAPEDVEPSEMSLEEIESRL---GSLIPADTVGQLKSAVWKERL 619 (1739)
Q Consensus 545 ~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~-~~-~~~~~~~~~~~s~ee~e~~~---~~l~~~~i~~~L~~~~WK~Rl 619 (1739)
..|- + +..-.+ .. -.|.=+....+|.+|.-=.- .+..-+|--+.++-.--|.|.
T Consensus 285 eqpi---~------------------~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~ 343 (885)
T KOG2023|consen 285 EQPI---C------------------KEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKE 343 (885)
T ss_pred cCcC---c------------------HHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchh
Confidence 0000 0 000000 00 00001112222322211000 011111111222222245555
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHH-HHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccc--
Q 000275 620 EAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ-VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI-- 696 (1739)
Q Consensus 620 ~a~e~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfq-V~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~-- 696 (1739)
.|..+... ..|+-|++- ..+-++.|=|.. +....|+++..+ |.......++|.+=+.++.-
T Consensus 344 ~~~~~~~~---~eDdddDe~-------DDdD~~~dWNLRkCSAAaLDVLanv------f~~elL~~l~PlLk~~L~~~~W 407 (885)
T KOG2023|consen 344 HGNGEDAD---DEDDDDDED-------DDDDAFSDWNLRKCSAAALDVLANV------FGDELLPILLPLLKEHLSSEEW 407 (885)
T ss_pred ccCccccc---ccccccccc-------ccccccccccHhhccHHHHHHHHHh------hHHHHHHHHHHHHHHHcCcchh
Confidence 55554431 111111100 011245555663 566777777743 44556778888888899885
Q ss_pred hhhhHHHHHHHHHHHhhchHhH--HHHHHHhh---hhcCChhhHHHHHHHHHHHHHHhccCcc------chHhHHHHHhh
Q 000275 697 KTRAHAMKCLTTFSEAVGPGFI--FERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHL------KLKDLIDFCKD 765 (1739)
Q Consensus 697 K~r~~a~e~L~~~aE~~~~~~V--~~~l~~~~---~~~KnPKv~~e~l~wl~~~i~eFG~~~l------~~K~li~~~k~ 765 (1739)
|.|+.+.=+|-++||-+--.|+ +..+++++ ...|-|-||+=+|= ++.+||-=++ -++++++-+..
T Consensus 408 ~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCW----TLsRys~wv~~~~~~~~f~pvL~~ll~ 483 (885)
T KOG2023|consen 408 KVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCW----TLSRYSKWVVQDSRDEYFKPVLEGLLR 483 (885)
T ss_pred hhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeee----eHhhhhhhHhcCChHhhhHHHHHHHHH
Confidence 7899999999999998765554 33344433 46888989877663 3445553222 24677766666
Q ss_pred hcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCC
Q 000275 766 TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (1739)
Q Consensus 766 ~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~l 845 (1739)
. +=.+|+-|.+||..-+.++---.|+.|-+|++ .+++++..-|.|.+. |.+.
T Consensus 484 ~-llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~----~IL~~l~~af~kYQ~-------KNLl---------------- 535 (885)
T KOG2023|consen 484 R-LLDSNKKVQEAACSAFATLEEEAGEELVPYLE----YILDQLVFAFGKYQK-------KNLL---------------- 535 (885)
T ss_pred H-HhcccHHHHHHHHHHHHHHHHhccchhHHHHH----HHHHHHHHHHHHHhh-------ccee----------------
Confidence 5 78899999999999999999999999999995 578899999999743 1111
Q ss_pred CcccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHc-cc-C-CCCCCccchHHHHh---hhcchhhHhHHHHHHHHH
Q 000275 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-NK-R-IQPAGTGELFGGLR---GRLYDSNKNLVMATLITL 919 (1739)
Q Consensus 846 prvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~a-nk-r-I~p~~~geL~~aLk---~Rl~DsNk~lv~~al~ii 919 (1739)
+=-+|+-++..=+-.+ |+ . ||- |++-|- .+|+|+.|.|-.+ |.|+
T Consensus 536 -----------------------ILYDAIgtlAdsvg~~Ln~~~Yiqi-----LmPPLi~KW~~lsd~DKdLfPL-LECl 586 (885)
T KOG2023|consen 536 -----------------------ILYDAIGTLADSVGHALNKPAYIQI-----LMPPLIEKWELLSDSDKDLFPL-LECL 586 (885)
T ss_pred -----------------------hHHHHHHHHHHHHHHhcCcHHHHHH-----hccHHHHHHHhcCcccchHHHH-HHHH
Confidence 1112222222111111 11 1 221 233332 3678999988765 8999
Q ss_pred HHHHHhcChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHH-HhcchhhhhHHHHHHHhcccCCcchHHHHHHHHH
Q 000275 920 GAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL-AAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (1739)
Q Consensus 920 ~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~-~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wl~ 998 (1739)
+.||+|||.+|-+|+-.+...-+.. ++.+ .+.+.... ..++-..=-+.|. .--+++.=|+
T Consensus 587 Ssia~AL~~gF~P~~~~Vy~Rc~~i-------l~~t-~q~~~~~~~~~~~~~pdkdfiI-----------~sLDL~SGLa 647 (885)
T KOG2023|consen 587 SSIASALGVGFLPYAQPVYQRCFRI-------LQKT-LQLLAKVQQDPTVEAPDKDFII-----------VSLDLLSGLA 647 (885)
T ss_pred HHHHHHHhccccccCHHHHHHHHHH-------HHHH-HHHHHhccCCccccCCCcceEE-----------EeHHHHhHHH
Confidence 9999999999999986544432211 1111 11000000 0000000000000 1135555566
Q ss_pred HHhccCCCCc-chhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000275 999 KQLTGLSGFP-DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1739)
Q Consensus 999 ~~l~~~~~~~-~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1739)
+.|..+-.+- --..+..-++.|++|.-+|||..|.++||-+.+.. .+.+.+.+.++
T Consensus 648 egLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c-~~~v~p~~~~f 704 (885)
T KOG2023|consen 648 EGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKAC-FEHVIPNLADF 704 (885)
T ss_pred HHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHhccchHHHH
Confidence 6666554321 11235666899999999999999999999998876 66666655443
No 11
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.76 E-value=0.0012 Score=93.82 Aligned_cols=608 Identities=14% Similarity=0.124 Sum_probs=350.5
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhh-cCCCCC--CChhHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccch--
Q 000275 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-- 363 (1739)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~--~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gLr~~F~~y-- 363 (1739)
+.+-+.+.+=..+.+|...|..++. .+.... -+.| .+..|-+++. +.+..+.-.|+.+++.||.+ ...+..+
T Consensus 194 LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaG-aVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~-s~e~r~~Iv 271 (2102)
T PLN03200 194 LVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAG-AVKQLLKLLGQGNEVSVRAEAAGALEALSSQ-SKEAKQAIA 271 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHccCCChHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 4555555555667778777766543 232111 1222 2677777886 67789999999999999985 2233333
Q ss_pred hhhhHHHHHHHhcc---------CCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcC-CchhHHHHHHHHHHH---
Q 000275 364 SRFLLPVLLEKLKE---------KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFC--- 430 (1739)
Q Consensus 364 ~~~~lp~lLeklKE---------KK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~K-nP~vk~et~~~l~r~--- 430 (1739)
....+|++++-+.. .+..+++.+.-||-.++. ....++..+...+.+. .+.+-..++.=|...
T Consensus 272 ~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg----g~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 272 DAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG----GMSALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC----CchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 23458888887752 345567777777777754 3344555555555432 223222333333333
Q ss_pred HhhCChhHHHHhh--hhhHHHHHhhhCCCCHHH-HHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCC
Q 000275 431 IETSSKAAVLKVH--KDYVPICMECLNDGTPEV-RDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDV 507 (1739)
Q Consensus 431 l~~~~~~~~~~~~--k~~~~~l~k~l~Ds~~~V-R~aa~~~l~~l~k~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~ 507 (1739)
+.... .....+ ..+++.+++++..+++.+ .+.+.++|..+ +|...+...+.+-|. . +-+...+....
T Consensus 348 ~d~~~--~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl---~gN~~l~~~L~~~da-i-k~LV~LL~~~~--- 417 (2102)
T PLN03200 348 FDSSA--ESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASL---YGNAYLSRKLNHAEA-K-KVLVGLITMAT--- 417 (2102)
T ss_pred cCCch--hhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHh---cCChHHHHHHHhccc-h-hhhhhhhccCC---
Confidence 33221 111111 246789999998887774 77777776542 333222222222110 0 00111111000
Q ss_pred CCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCC
Q 000275 508 ATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPS 587 (1739)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~ 587 (1739)
...+........ ...
T Consensus 418 ------------------------~evQ~~Av~aL~--------------------------------~L~--------- 432 (2102)
T PLN03200 418 ------------------------ADVQEELIRALS--------------------------------SLC--------- 432 (2102)
T ss_pred ------------------------HHHHHHHHHHHH--------------------------------HHh---------
Confidence 000000000000 000
Q ss_pred CCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhcCCCccchHHHHH
Q 000275 588 EMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQ 661 (1739)
Q Consensus 588 ~~s~ee~e~~~~~l~~~~i~~~L~~~~WK~Rl~a~e~l~~~v~~~~~~------~~~~~~Lvr~l~~~PgwkesNfqV~~ 661 (1739)
.-+.|-.+.....-.-+-++..|.+.+=..|..|+..+.....+.++. ......|+++|. ..++.+++
T Consensus 433 ~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~------s~~~~iqe 506 (2102)
T PLN03200 433 CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE------TGSQKAKE 506 (2102)
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc------CCCHHHHH
Confidence 001122222222223356677777777777777776665443322110 123456677664 33667888
Q ss_pred HHHHHHHHHHHhcCCCCccch--hhhccchhhcc--ccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHH
Q 000275 662 QVIEVINYLAATATKFPKKCV--VLCLLGISERV--ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSE 737 (1739)
Q Consensus 662 ~~leil~~la~~~~~fs~~~~--~~~l~~lveKl--gD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e 737 (1739)
...-++..++.. ..--+..+ .-+++.+++-+ ||.+.+..+..+|..++.... ..++.++... ..+.+|+++.-
T Consensus 507 eAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-~~~I~~Lv~L-Llsdd~~~~~~ 583 (2102)
T PLN03200 507 DSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD-AATISQLTAL-LLGDLPESKVH 583 (2102)
T ss_pred HHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc-hhHHHHHHHH-hcCCChhHHHH
Confidence 777777766532 11111222 12455555544 456788888888888876433 3455666654 68899999999
Q ss_pred HHHHHHHHHHHhcc-----CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHH
Q 000275 738 GILWMVSAVEDFGV-----SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1739)
Q Consensus 738 ~l~wl~~~i~eFG~-----~~l~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~E 812 (1739)
++.-+..++.--.. .++..-.-|+.+.+. |.+.|+.++..|..+|..+...- ++.... .+++
T Consensus 584 aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sgs~~ikk~Aa~iLsnL~a~~-~d~~~a----------vv~a- 650 (2102)
T PLN03200 584 VLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSSKEETQEKAASVLADIFSSR-QDLCES----------LATD- 650 (2102)
T ss_pred HHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCC-hHHHHH----------HHHc-
Confidence 99888776551111 111112456677777 89999999999998887665311 000000 0000
Q ss_pred HhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcc--cCCCC
Q 000275 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEAN--KRIQP 890 (1739)
Q Consensus 813 F~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~an--krI~p 890 (1739)
+-|+ -++.-+.+.+-++|+|+--+|..+....+ ++..-
T Consensus 651 ---------------------------------------gaIp-PLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~ 690 (2102)
T PLN03200 651 ---------------------------------------EIIN-PCIKLLTNNTEAVATQSARALAALSRSIKENRKVSY 690 (2102)
T ss_pred ---------------------------------------CCHH-HHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 0023 37777888899999999999999985221 11110
Q ss_pred CCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchh
Q 000275 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD 970 (1739)
Q Consensus 891 ~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~ 970 (1739)
.-...++.|..-|++.+..++..|+..++.|+..-.-..+-..-..+++++..|.+....+|+.|..+|-..+.+...+
T Consensus 691 -v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~ 769 (2102)
T PLN03200 691 -AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVD 769 (2102)
T ss_pred -HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChh
Confidence 1133567799999999999999999999999876532211122345899999999999999999999999998888876
Q ss_pred hhh-H---------HHHHHHhcccC-Ccch--HHHHHHHHHHHhccCCC-Cc------chhhhhhHHhhhcCCCCHHHHH
Q 000275 971 KMV-P---------YVTTALTDAKL-GAEG--RKDLFDWLSKQLTGLSG-FP------DAAHLLKPASIAMTDKSSDVRK 1030 (1739)
Q Consensus 971 ~~~-~---------~i~~~L~~~~~-~p~~--r~e~l~wl~~~l~~~~~-~~------~~~~~~~p~~~~L~Dr~~dVRk 1030 (1739)
..+ . .+.+.|...+. +..- =-+.+.||++.=.+... .+ +.-.-+.|++.||.+-+++|-+
T Consensus 770 ~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~ 849 (2102)
T PLN03200 770 DVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQD 849 (2102)
T ss_pred HHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHH
Confidence 644 2 35555663221 2221 34788899874222221 12 2234577899999999999999
Q ss_pred HHHHHHHHHHH
Q 000275 1031 AAEACIVEILR 1041 (1739)
Q Consensus 1031 aA~~~L~~~m~ 1041 (1739)
+|-++|..+.+
T Consensus 850 kai~il~~~~~ 860 (2102)
T PLN03200 850 KAIEILSRLCR 860 (2102)
T ss_pred HHHHHHHHHhc
Confidence 99999887754
No 12
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.68 E-value=0.00017 Score=92.52 Aligned_cols=570 Identities=16% Similarity=0.191 Sum_probs=326.0
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchhHH-HHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccch
Q 000275 605 DTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVE-ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV 682 (1739)
Q Consensus 605 ~i~~~L~~~~WK~Rl~a~e~l~~~v~~-~~~~~~~~~-~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~ 682 (1739)
.+++.+.+++=--|.=|...|...++. .-.++.+++ -+++++-+ -..|+|-.|++.....+..++++ ...--.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLk--lL~D~ngEVQnlAVKClg~lvsK---vke~~l 83 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLK--LLEDKNGEVQNLAVKCLGPLVSK---VKEDQL 83 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHH--HHhccCcHHHHHHHHHHHHHHhh---chHHHH
Confidence 456667777655666666666555543 111222221 13344332 14789999999999999988853 444445
Q ss_pred hhhccchhhcc-ccch-hhhHHHH-HHHHHHHhhc------hHhHHHHHHHhhhhcCChh------hHHHHHHHHHHHHH
Q 000275 683 VLCLLGISERV-ADIK-TRAHAMK-CLTTFSEAVG------PGFIFERLYKIMKDHKNPK------VLSEGILWMVSAVE 747 (1739)
Q Consensus 683 ~~~l~~lveKl-gD~K-~r~~a~e-~L~~~aE~~~------~~~V~~~l~~~~~~~KnPK------v~~e~l~wl~~~i~ 747 (1739)
..++..+++++ .+.+ .|+.+.- +.+.+++.-+ ..-|+.++.+.+ .+-+-+ ++-|+|+-|+..+.
T Consensus 84 e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l-~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 84 ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKL-KQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHH-HHHhhhcccchhhHHHHHHHHHHHHH
Confidence 55555666663 3322 4555444 4444555431 123455555443 233333 89999999999999
Q ss_pred HhccCccch-HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcc
Q 000275 748 DFGVSHLKL-KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKK 826 (1739)
Q Consensus 748 eFG~~~l~~-K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R 826 (1739)
.||--..|. ..+..++.-. |++.-.+||.-|+.++|-+-.+.+..+...+
T Consensus 163 r~g~ll~~fh~~il~~l~~q-l~s~R~aVrKkai~~l~~la~~~~~~ly~~l---------------------------- 213 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQ-LQSPRLAVRKKAITALGHLASSCNRDLYVEL---------------------------- 213 (1233)
T ss_pred hhcccCcchHHHHHHHHhhc-ccChHHHHHHHHHHHHHHHHHhcCHHHHHHH----------------------------
Confidence 999755555 5677777777 9999999999999999988876655444332
Q ss_pred ccccccCcCCCCCCCCCCCCcccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcch
Q 000275 827 TVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD 906 (1739)
Q Consensus 827 ~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~D 906 (1739)
...+++ .|-.|
T Consensus 214 ----------------------------i~~Ll~--------------------------------------~L~~~--- 224 (1233)
T KOG1824|consen 214 ----------------------------IEHLLK--------------------------------------GLSNR--- 224 (1233)
T ss_pred ----------------------------HHHHHh--------------------------------------ccCCC---
Confidence 001111 11111
Q ss_pred hhHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHh---ccCchhHHHHHHHHHHHHHHhcc--hhhhhHH----HH
Q 000275 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL---GDNKKHMRECTLTVLDAWLAAVH--LDKMVPY----VT 977 (1739)
Q Consensus 907 sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l---~D~K~~vR~aa~~alda~~~~~g--l~~~~~~----i~ 977 (1739)
++-.-+.+-.+|++.|+.+.|..|..|.-.++|-++... ...---+|+..++++.++...|. +-++.|+ ..
T Consensus 225 ~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l 304 (1233)
T KOG1824|consen 225 TQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCL 304 (1233)
T ss_pred CchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHH
Confidence 122234456788999999999999999999999998888 77778999999999999999986 2333332 33
Q ss_pred HHHh-cccCCcch-HHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000275 978 TALT-DAKLGAEG-RKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1739)
Q Consensus 978 ~~L~-~~~~~p~~-r~e~l~wl~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1739)
+++. +||.|-.. --|--.++. ... +... .-.|+-=+|-+=-||.+|..|+..++. .-.|.+-...+.+
T Consensus 305 ~yisYDPNy~yd~~eDed~~~~e----d~e---Dde~--~deYsDDeD~SWkVRRaAaKcl~a~Is-SR~E~L~~~~q~l 374 (1233)
T KOG1824|consen 305 SYISYDPNYNYDTEEDEDAMFLE----DEE---DDEQ--DDEYSDDEDMSWKVRRAAAKCLEAVIS-SRLEMLPDFYQTL 374 (1233)
T ss_pred HHhccCCCCCCCCccchhhhhhh----ccc---cchh--ccccccccchhHHHHHHHHHHHHHHHh-ccHHHHHHHHHHh
Confidence 3343 45443221 111111111 110 1111 124444577778899999999987664 3445555555666
Q ss_pred CchhHHHHHHHHHhccCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhh
Q 000275 1056 QGPALALILERIKLNGASQ--------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127 (1739)
Q Consensus 1056 k~~~~~~i~~~l~ka~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1127 (1739)
-|+......+.=|..+.-. -.+.+. ...-. ..|.-.+
T Consensus 375 ~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~-----------------------------~~~~~------d~d~~e~ 419 (1233)
T KOG1824|consen 375 GPALISRFKEREENVKADVFHAYIALLKQTRPV-----------------------------IEVLA------DNDAMEQ 419 (1233)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCC-----------------------------ccccc------Cchhhhc
Confidence 5554444333222211000 000000 00000 0000000
Q ss_pred hhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhH
Q 000275 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIE 1207 (1739)
Q Consensus 1128 ~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~ 1207 (1739)
+++.. ..|. |+.|. +.+=+.+..+|=.+..|....++.+|.+.+..-+..+..
T Consensus 420 ~g~~s---------------~~~~-----------L~~~~-~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~ 472 (1233)
T KOG1824|consen 420 GGTPS---------------DLSM-----------LSDQV-PLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQ 472 (1233)
T ss_pred cCCcc---------------chHH-----------HHhhh-HHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhh
Confidence 11100 0021 11111 123334445555677788899999999999888888888
Q ss_pred hHHHHHHHHHHhccCcchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhcc
Q 000275 1208 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFY 1287 (1739)
Q Consensus 1208 ~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vy 1287 (1739)
..|-++-=+..+|.|.|++..+|.. .|.-+...|...+-+-=..--..+.|-++.-+|||=-+
T Consensus 473 ~~~slvpgI~~~l~DkSsss~~ki~-~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyK---------------- 535 (1233)
T KOG1824|consen 473 HIPSLVPGIIYSLNDKSSSSNLKID-ALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYK---------------- 535 (1233)
T ss_pred cccccchhhhhhcCCccchHHHHHH-HHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHh----------------
Confidence 8888888899999999999888743 33334444444443222233344555555555664222
Q ss_pred CccchHHHHHhhhccCChhhHhHHHHHHHHHHHhh-------cCcccCccchH--HHHHHH-hccCChhHHHHHHHHHHH
Q 000275 1288 SATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHH-------GAEISGQLKSL--QIVASL-TAERDGEIRKAALNTLAT 1357 (1739)
Q Consensus 1288 p~skvf~~l~~glksKN~r~R~Ecl~el~~li~~~-------G~~v~~~~Kal--~~ia~~-i~drD~~VR~AALn~l~~ 1357 (1739)
.-+|.|-.+..+++-- |+++..-.+.+ -.+.++ ..|.|..||.+||.|+++
T Consensus 536 -------------------isaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq 596 (1233)
T KOG1824|consen 536 -------------------ISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQ 596 (1233)
T ss_pred -------------------hhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 2233333344433321 11111111111 122222 248999999999999999
Q ss_pred HHHHhchhHHHHhccCCHHHHhhHHHHHHHhHH
Q 000275 1358 GYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVR 1390 (1739)
Q Consensus 1358 ~y~~~Gd~v~k~~g~ls~k~~s~Leer~kr~~~ 1390 (1739)
.-..+||. +|+.-+.-+-.+-||+++-..
T Consensus 597 ~i~~fgD~----l~~eL~~~L~il~eRl~nEiT 625 (1233)
T KOG1824|consen 597 IIANFGDF----LGNELPRTLPILLERLGNEIT 625 (1233)
T ss_pred HHHHHhhh----hhhhhHHHHHHHHHHHhchhH
Confidence 99999964 455556666666677765433
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.66 E-value=0.012 Score=84.14 Aligned_cols=811 Identities=17% Similarity=0.162 Sum_probs=442.4
Q ss_pred cccccCCCCchhhhhhhhcc--ChHHHHHHHHHHHHhhhcC---CCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 000275 278 PVDILTPLEKSGFWEGVKAT--KWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNL 352 (1739)
Q Consensus 278 ~vdIl~klpk~~f~~~l~s~--KWkeRkEaLe~l~~l~~~p---Ki~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~l 352 (1739)
|....... ..+.+++.+. +=++|+.++-+|..+.+.. |..=++.++.+..|-..|.-.+..+...|+.++..|
T Consensus 8 ~~~~~~~v--~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nL 85 (2102)
T PLN03200 8 PDGTLASV--AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVL 85 (2102)
T ss_pred ccchHHHH--HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 33444444 3688899866 7799999999999987532 321123344566677777644566777777788877
Q ss_pred HHH--hcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-CC----C---hhhhHHHHHHHhhcCCc---hh
Q 000275 353 ARG--LRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CL----N---LVDVVEDVKTSVKNKVP---LV 419 (1739)
Q Consensus 353 A~g--Lr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~-~~----~---l~~~~e~i~~al~~KnP---~v 419 (1739)
+.- .+...- ....+|++++-|++-....++++..+|-.+...+ |- . -...++.+...+++.+. .+
T Consensus 86 S~~e~nk~~Iv--~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L 163 (2102)
T PLN03200 86 CKEEDLRVKVL--LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVV 163 (2102)
T ss_pred hcCHHHHHHHH--HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHH
Confidence 743 222222 2689999999999999999999999999887531 00 0 12345666677776542 12
Q ss_pred HHHHHHHHHHHHhhCChhHHHHhhh-hhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHH
Q 000275 420 RSLTLNWVTFCIETSSKAAVLKVHK-DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE 498 (1739)
Q Consensus 420 k~et~~~l~r~l~~~~~~~~~~~~k-~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~Ld~~kk~KI~e 498 (1739)
+..+..-|...-. ++......++. ..+|.++..|.+.++.++..|+.+|..++...++ . +..|.
T Consensus 164 ~~~Av~AL~nLs~-~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~------------~~aVI- 228 (2102)
T PLN03200 164 EGLLTGALRNLCG-STDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-S------------ISKVL- 228 (2102)
T ss_pred HHHHHHHHHHHhc-CccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-H------------HHHHH-
Confidence 2222223322222 22111111123 3899999999999999999998888777554432 1 11111
Q ss_pred HHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCC
Q 000275 499 MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLT 578 (1739)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~ 578 (1739)
+. |+ .
T Consensus 229 --ea-Ga----------V-------------------------------------------------------------- 233 (2102)
T PLN03200 229 --DA-GA----------V-------------------------------------------------------------- 233 (2102)
T ss_pred --HC-CC----------H--------------------------------------------------------------
Confidence 11 00 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhh-ccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchH
Q 000275 579 EAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNV 657 (1739)
Q Consensus 579 ~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~~-~~WK~Rl~a~e~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNf 657 (1739)
+-++..|.+ .+-..|-+|.--|...... .....+.++. .
T Consensus 234 -------------------------P~LV~LL~sg~~~~VRE~AA~AL~nLAs~---s~e~r~~Iv~----a-------- 273 (2102)
T PLN03200 234 -------------------------KQLLKLLGQGNEVSVRAEAAGALEALSSQ---SKEAKQAIAD----A-------- 273 (2102)
T ss_pred -------------------------HHHHHHHccCCChHHHHHHHHHHHHHhcC---CHHHHHHHHH----C--------
Confidence 000111110 0111122222222211110 0011111221 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHH
Q 000275 658 QVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSE 737 (1739)
Q Consensus 658 qV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e 737 (1739)
.++..+-.+... + ++ .|+.+ . ...-+++.+.-+|-.+|--. ..++..+-..+-..+.+.++++
T Consensus 274 ----GgIp~LI~lL~s-p--~~----e~~~~---~-~~~~Lqe~AvwALsNIcgg~--~~ll~~L~~ll~s~rd~~~~ad 336 (2102)
T PLN03200 274 ----GGIPALINATVA-P--SK----EFMQG---E-FAQALQENAMGALANICGGM--SALILYLGELSESPRSPAPIAD 336 (2102)
T ss_pred ----CCHHHHHHHHhC-c--ch----hhhcc---c-cchHHHHHHHHHHHHHhCCc--hhhHHHHHHhhcccchHHHHHH
Confidence 112222211110 0 00 00000 0 01123455555555555322 2334444443333456667778
Q ss_pred HHHHHHHHHHHhccCc-----cchHhHHHHHhhhcCCCccHH-HHHHHHHHHHHHHhhhCch-hHhhh--hcchHHHHHH
Q 000275 738 GILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSAAA-TRNATIKLLGALHKFVGPD-IKGFL--ADVKPALLSA 808 (1739)
Q Consensus 738 ~l~wl~~~i~eFG~~~-----l~~K~li~~~k~~~l~~sN~~-VR~aAi~Ll~~ly~~~G~~-l~~~l--~dlkpall~~ 808 (1739)
++.-+..++..|.... ++...++.-+-+. +.+.||. |...++..|..+| |.. ++..| .|.++.
T Consensus 337 a~gALayll~l~d~~~~~~~~i~~~~v~~~LV~L-lr~k~p~~vqe~V~eALasl~---gN~~l~~~L~~~daik~---- 408 (2102)
T PLN03200 337 TLGALAYALMVFDSSAESTRAFDPTVIEQILVKL-LKPRDTKLVQERIIEALASLY---GNAYLSRKLNHAEAKKV---- 408 (2102)
T ss_pred HHhhHHHHHHhcCCchhhhhhccccccHHHHHHH-hCCCCCchhHHHHHHHHHHhc---CChHHHHHHHhccchhh----
Confidence 8888888877766432 2222233344555 6777666 4666666665554 322 22222 111222
Q ss_pred HHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCC
Q 000275 809 LDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRI 888 (1739)
Q Consensus 809 ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI 888 (1739)
++.-+...+=..|.++...|..++...+..+
T Consensus 409 -------------------------------------------------LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~ 439 (2102)
T PLN03200 409 -------------------------------------------------LVGLITMATADVQEELIRALSSLCCGKGGLW 439 (2102)
T ss_pred -------------------------------------------------hhhhhccCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3333333333566666777666663211111
Q ss_pred CCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhh---hhhhhHHHHHHhccCchhHHHHHHHHHHHHHH
Q 000275 889 QPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS---SKGVLSDILKCLGDNKKHMRECTLTVLDAWLA 965 (1739)
Q Consensus 889 ~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~---~k~l~~~il~~l~D~K~~vR~aa~~alda~~~ 965 (1739)
+--.--.-++.|-.-|...+..++..|+..++.|+.+ ....+. --+.+|+++..|...+..+++.|..+|--...
T Consensus 440 ~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~--ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~ 517 (2102)
T PLN03200 440 EALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE--VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCC 517 (2102)
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 1110012367777778778899999999999999763 332221 23689999999999999999998888876543
Q ss_pred h-------cchhhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHH
Q 000275 966 A-------VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVE 1038 (1739)
Q Consensus 966 ~-------~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~ 1038 (1739)
. ++-...++.+.+.|.++ ++..|.+++.=|. .|....+ ...++|++.-|...++.+...+-++|+.
T Consensus 518 ~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~-nLi~~~d----~~~I~~Lv~LLlsdd~~~~~~aL~vLgn 590 (2102)
T PLN03200 518 HSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLT-KLVRTAD----AATISQLTALLLGDLPESKVHVLDVLGH 590 (2102)
T ss_pred CcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHH-HHHhccc----hhHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 1 11123455667777754 4556644443333 3322221 1234666666776777888887778877
Q ss_pred HHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcc
Q 000275 1039 ILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESI 1118 (1739)
Q Consensus 1039 ~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1118 (1739)
++.....+.+..... ....-.+.+.+.++.
T Consensus 591 Ilsl~~~~d~~~~g~-~~~ggL~~Lv~LL~s------------------------------------------------- 620 (2102)
T PLN03200 591 VLSVASLEDLVREGS-AANDALRTLIQLLSS------------------------------------------------- 620 (2102)
T ss_pred HHhhcchhHHHHHhh-hccccHHHHHHHHcC-------------------------------------------------
Confidence 777555544332210 001122222222221
Q ss_pred ccchhhhhhhhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhc
Q 000275 1119 MSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKAL 1198 (1739)
Q Consensus 1119 ~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l 1198 (1739)
+++..+..--..=+++..-|.++++++ ...-.=+-++..|.+.+|.-.-++.-.|....
T Consensus 621 ------------------gs~~ikk~Aa~iLsnL~a~~~d~~~av---v~agaIpPLV~LLss~~~~v~keAA~AL~nL~ 679 (2102)
T PLN03200 621 ------------------SKEETQEKAASVLADIFSSRQDLCESL---ATDEIINPCIKLLTNNTEAVATQSARALAALS 679 (2102)
T ss_pred ------------------CCHHHHHHHHHHHHHHhcCChHHHHHH---HHcCCHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 001110000000033444555665554 33344456777888888876554444444333
Q ss_pred CCCh----hhhhH--hHHHHHHHHHHhccCcchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHH
Q 000275 1199 PSIR----KDIIE--VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1272 (1739)
Q Consensus 1199 ~~~~----~~~i~--~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~v 1272 (1739)
.+.. ..++. .+-.+.+++ .+.+..+...+++.|..++..=... .+.=..-++|.|+.=+.+..+.+
T Consensus 680 ~~~~~~q~~~~v~~GaV~pL~~LL----~~~d~~v~e~Al~ALanLl~~~e~~----~ei~~~~~I~~Lv~lLr~G~~~~ 751 (2102)
T PLN03200 680 RSIKENRKVSYAAEDAIKPLIKLA----KSSSIEVAEQAVCALANLLSDPEVA----AEALAEDIILPLTRVLREGTLEG 751 (2102)
T ss_pred hCCCHHHHHHHHHcCCHHHHHHHH----hCCChHHHHHHHHHHHHHHcCchHH----HHHHhcCcHHHHHHHHHhCChHH
Confidence 2221 12232 244455554 5678888888888888665432211 11222345899998888888889
Q ss_pred HHHHHHHHHHHhhccCccchH-HH---------HHhhhccCChhh--HhHHHHHHHHHHH-hhcCcccCc--------cc
Q 000275 1273 REKMRELTKQIVNFYSATKTL-PY---------ILEGLRSKNNRT--RIECVDLVGFLID-HHGAEISGQ--------LK 1331 (1739)
Q Consensus 1273 R~~vr~i~~~~~~vyp~skvf-~~---------l~~glksKN~r~--R~Ecl~el~~li~-~~G~~v~~~--------~K 1331 (1739)
|+..-..+-++|.-+|...++ .| |++-|++=|.+. -.|-||-|+.+.. ++|.+-..| +-
T Consensus 752 k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~ 831 (2102)
T PLN03200 752 KRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPS 831 (2102)
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccC
Confidence 999999999999999988866 22 345567777655 4468999998877 455443122 23
Q ss_pred hHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhccC---CHHHHhhHHHHHHHh
Q 000275 1332 SLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL---TDAQKSMLDDRFKWK 1388 (1739)
Q Consensus 1332 al~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k~~g~l---s~k~~s~Leer~kr~ 1388 (1739)
.|.-+-.++++-.|.|-..|+..|. .+++|+-. .+|++ .++-.+-|-.|+=.+
T Consensus 832 ~l~~l~~~l~~~~p~~~~kai~il~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 832 SLEPLVRCLAEGHPLVQDKAIEILS---RLCRDQPV-VLGDLIANASKCISSLADRIINS 887 (2102)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH---HHhccChh-HHHHHHhcccchHHHHHHHHhhc
Confidence 4677778889999999999999998 55666522 23322 456677788887665
No 14
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=6.4e-07 Score=111.52 Aligned_cols=305 Identities=18% Similarity=0.177 Sum_probs=213.5
Q ss_pred hccCchhHHHHHHHHHHHHHhhCCCcc-ChhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHH
Q 000275 138 KNKVAKAVVPAIDVMFQALSEFGAKII-PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (1739)
Q Consensus 138 ~~K~PKvv~a~i~~l~~~l~~FG~k~v-~~K~ilk~l~~lf~~~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q 216 (1739)
.+..|.|-..-+.+...++.+-|-+.+ +++++...- +=...+-++|+....+.+.+-+++-.. +.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~--l~~~~~~~~~~~~~v~~~~~a~~~~~~--------d~~~~- 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQR--LNSLHNDNLRNNVVVLEGTLAFHLQIV--------DPRPI- 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHH--hccchhHHHhhhhHHHHHHHHHhcccc--------Ccchh-
Confidence 566677777777888888888887543 444432211 001128899999888888777666421 12221
Q ss_pred HHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhc
Q 000275 217 KKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA 296 (1739)
Q Consensus 217 ~keLe~efek~~~~~~p~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s 296 (1739)
+-+|..|+... +|+...+..-..- -.+ ..... . -.+...++ +...+.+++
T Consensus 96 -~~~~~~~~~~~---tps~~~q~~~~~~-l~~-~~~~~-~------------------~~~~~~~l-----~~l~~ll~~ 145 (569)
T KOG1242|consen 96 -SIIEILLEELD---TPSKSVQRAVSTC-LPP-LVVLS-K------------------GLSGEYVL-----ELLLELLTS 145 (569)
T ss_pred -HHHHHHHHhcC---CCcHHHHHHHHHH-hhh-HHHHh-h------------------ccCHHHHH-----HHHHHHhcc
Confidence 33444555432 2322221110000 000 00000 0 00111222 345667889
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhccccHHHHHH-HHHHHHHHHHHhcccccchhhhhHHHHHHHh
Q 000275 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVE-AIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (1739)
Q Consensus 297 ~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~-A~~~l~~lA~gLr~~F~~y~~~~lp~lLekl 375 (1739)
.+-.+|+.+-.++..+....=+..--=..++..|-+-+.|-|-..... ++-+......-||+.|.||...++|.+|.+|
T Consensus 146 ~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~ 225 (569)
T KOG1242|consen 146 TKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF 225 (569)
T ss_pred ccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh
Confidence 999999999999888877666655333567888889999988888885 8888899999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCh---hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHh
Q 000275 376 KEKKPTVAESLTQTLQAMHKAGCLNL---VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452 (1739)
Q Consensus 376 KEKK~~V~eA~~~aLda~~~~~~~~l---~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k 452 (1739)
+|+=+.||+|+..|..+++. |++. ..++...+..+....++-|+.++..+. ++..+-+..+..++..++|.+..
T Consensus 226 ~d~~~~Vr~Aa~~a~kai~~--~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 226 GDKINKVREAAVEAAKAIMR--CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSE 302 (569)
T ss_pred hccchhhhHHHHHHHHHHHH--hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHH
Confidence 99999999999999999998 5553 455666666666668888888887776 77777666666777899999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhh
Q 000275 453 CLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (1739)
Q Consensus 453 ~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~ 486 (1739)
.|.|+.++||++|.+||-.+-.++....+.++..
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip 336 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIP 336 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 9999999999999999999888888776666654
No 15
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.52 E-value=0.00098 Score=83.81 Aligned_cols=567 Identities=19% Similarity=0.230 Sum_probs=319.9
Q ss_pred cccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcC
Q 000275 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK 415 (1739)
Q Consensus 336 DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~K 415 (1739)
|-........-.+|..||++-|=.| .+..|=--+--+-.-||+-...|.-.++.. ..+..++.-+...-++|
T Consensus 452 ded~yar~egreIisnLakaaGla~------mistmrpDidn~deYVRnttarafavvasa--lgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAAGLAT------MISTMRPDIDNKDEYVRNTTARAFAVVASA--LGIPALLPFLKAVCGSK 523 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHhhhHH------HHHhhcCCcccccHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHhccc
Confidence 3334445556667777766544222 222232333445566777777777777765 78888888777766766
Q ss_pred -CchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh---hHHHHHhhcCCH-
Q 000275 416 -VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERSIEKLDD- 490 (1739)
Q Consensus 416 -nP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge---~~l~~~l~~Ld~- 490 (1739)
..+.|--..+.....-.-...+. .+.++.++.++-++|.|.+..||--++-+|+++....|. +.|...+.-|-.
T Consensus 524 kSwqaRhTgIkivqqIail~Gcsv-lphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCSV-LPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcchh-hhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 67888655554443322223333 244588899999999999999999999999999999874 333333322211
Q ss_pred HH--HHH-HHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 000275 491 VR--RNK-LSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKD 567 (1739)
Q Consensus 491 ~k--k~K-I~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~a~~ 567 (1739)
++ +.| +..+++.-+..-+-.. ++-. .=-.+. .+.--.+- .+.
T Consensus 603 ir~hrgk~laafLkAigyliplmd--------------~eya-~yyTre---vmlil~rE--------f~s--------- 647 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMD--------------AEYA-SYYTRE---VMLILIRE--------FGS--------- 647 (1172)
T ss_pred HHHccChHHHHHHHHHhhcccccc--------------HHHH-HHhHHH---HHHHHHHh--------hCC---------
Confidence 11 111 1111111110000000 0000 000000 00000000 000
Q ss_pred CCCCcccccCCCCCCCCCCCCCC------HHHHHHHH---hccCcHhHHHhhhhccHHHHHHH----HHHHHHHHHhhhc
Q 000275 568 GSGKQETSKLTEAPEDVEPSEMS------LEEIESRL---GSLIPADTVGQLKSAVWKERLEA----ISSLRQQVEAVQN 634 (1739)
Q Consensus 568 ~~~~~~~s~~~~~~~~~~~~~~s------~ee~e~~~---~~l~~~~i~~~L~~~~WK~Rl~a----~e~l~~~v~~~~~ 634 (1739)
+ ..+|- -++|.+.- ..++..|++.-++.+=|-.|+++ +..+.+.--+.-.
T Consensus 648 ------------P-----DeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~ 710 (1172)
T KOG0213|consen 648 ------------P-----DEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA 710 (1172)
T ss_pred ------------C-----hHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH
Confidence 0 00000 00000000 12566788888999999999987 3333222111111
Q ss_pred cchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC--CCCccchhhhccchhhccccchhhhHHHHHHHHHHHh
Q 000275 635 LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEA 712 (1739)
Q Consensus 635 ~~~~~~~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~--~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~ 712 (1739)
.-...+++-|.+. .++|-|-|--+.+.+.+..+..+.+ .|..+.....+.+ +|-+|.|-
T Consensus 711 KvG~~~~v~R~v~---~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidg----------------il~Afqeq 771 (1172)
T KOG0213|consen 711 KVGSDPIVSRVVL---DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDG----------------ILYAFQEQ 771 (1172)
T ss_pred HhCchHHHHHHhh---hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH----------------HHHHHHhc
Confidence 1123455555554 4799999999999998888877643 2333333333322 55566665
Q ss_pred hchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCCccHHHHHHHHHHHHHH-----
Q 000275 713 VGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGAL----- 786 (1739)
Q Consensus 713 ~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~~l~-~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~l----- 786 (1739)
+.-.-|+ |+.+....++||..+=+ +..++.-.... |.|.-|.||..|..|++.+
T Consensus 772 tt~d~vm-------------------l~gfg~V~~~lg~r~kpylpqi~stiL~r-Lnnksa~vRqqaadlis~la~Vlk 831 (1172)
T KOG0213|consen 772 TTEDSVM-------------------LLGFGTVVNALGGRVKPYLPQICSTILWR-LNNKSAKVRQQAADLISSLAKVLK 831 (1172)
T ss_pred ccchhhh-------------------hhhHHHHHHHHhhccccchHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHH
Confidence 4433322 22233344556653211 22344444445 7777778888777776653
Q ss_pred -------HhhhCchhHhhhhcchHHHHHHHHHHHhcCCC-CCCCCCccccccccCcCCCCCCCCCC-CCcccccccCcHH
Q 000275 787 -------HKFVGPDIKGFLADVKPALLSALDAEYEKNPF-EGTVVPKKTVRASESTSSVSSGGSDG-LPREDISGKFTPT 857 (1739)
Q Consensus 787 -------y~~~G~~l~~~l~dlkpall~~ie~EF~K~~~-~~~p~p~R~~r~~~~~~~~~~~~~d~-lprvDIs~kit~~ 857 (1739)
-.|+|--|..+|+.+-|..|-.|-.-.--+-. -|- .-. -|--||.+.|||-
T Consensus 832 tc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm--------------------~km~pPi~dllPrltPI 891 (1172)
T KOG0213|consen 832 TCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGM--------------------TKMTPPIKDLLPRLTPI 891 (1172)
T ss_pred hccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccc--------------------cccCCChhhhcccchHh
Confidence 34566667777766655544444333221100 000 001 1233556667874
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHH---HHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhhh
Q 000275 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG---GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1739)
Q Consensus 858 l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~---aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1739)
| .++-=|+--..++=|..|...+.-++.+- |-++ .|-.-|+--||-+-..|.+..|.||.|.||.
T Consensus 892 L----knrheKVqen~IdLvg~IadrgpE~v~aR---EWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq----- 959 (1172)
T KOG0213|consen 892 L----KNRHEKVQENCIDLVGTIADRGPEYVSAR---EWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----- 959 (1172)
T ss_pred h----hhhHHHHHHHHHHHHHHHHhcCcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH-----
Confidence 3 44556777778888888887543333332 2222 2333445679999999999999999999974
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHH---HHHHHHhccCCCCcchh
Q 000275 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLF---DWLSKQLTGLSGFPDAA 1011 (1739)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l---~wl~~~l~~~~~~~~~~ 1011 (1739)
-++..++..|+-+.-+.|.+..-++-..++.||.=.++|.+..-...|..| ....+| .|+-++..+. +.+..
T Consensus 960 -dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~n--VQnGVLkalsf~Feyigem--skdYi 1034 (1172)
T KOG0213|consen 960 -DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEAN--VQNGVLKALSFMFEYIGEM--SKDYI 1034 (1172)
T ss_pred -HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhH--HHHhHHHHHHHHHHHHHHH--hhhHH
Confidence 456777888888889999999999999999999888888666555545332 344444 4555554443 34667
Q ss_pred hhhhH-HhhhcCCCCHHHHHHHHHHHHHH
Q 000275 1012 HLLKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (1739)
Q Consensus 1012 ~~~~p-~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1739)
..+.| +-..|+||++--|.-|..++-.+
T Consensus 1035 yav~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1035 YAVTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred HHhhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 77778 45599999999999888776543
No 16
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.42 E-value=0.0011 Score=85.19 Aligned_cols=376 Identities=19% Similarity=0.188 Sum_probs=226.8
Q ss_pred hhhhcc--ChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccc-hhhhhH
Q 000275 292 EGVKAT--KWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLL 368 (1739)
Q Consensus 292 ~~l~s~--KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~-y~~~~l 368 (1739)
+-+++. +=++|++++..|.-+...-. |.+.+.-.+-+.+...|..+- -++.|+-..=.+-.+ ....+.
T Consensus 11 ~~~~~~~~~~~~~~~~l~kli~~~~~G~----~~~~~~~~vi~l~~s~~~~~K-----rl~yl~l~~~~~~~~~~~~l~~ 81 (526)
T PF01602_consen 11 KILNSFKIDISKKKEALKKLIYLMMLGY----DISFLFMEVIKLISSKDLELK-----RLGYLYLSLYLHEDPELLILII 81 (526)
T ss_dssp HHHHCSSTHHHHHHHHHHHHHHHHHTT-------GSTHHHHHCTCSSSSHHHH-----HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHhCCCCHHHH-----HHHHHHHHHHhhcchhHHHHHH
Confidence 334444 66788999998765432111 233344444455555555433 333333222222222 478889
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhh-hH
Q 000275 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YV 447 (1739)
Q Consensus 369 p~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~-~~ 447 (1739)
+.+..-+.+..+.+|..+..+|-.+... .-.+.+...|...+.|++|-||..++.-+.+.+...+.. +.. +.
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-----~~~~~~ 154 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-----VEDELI 154 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-----HHGGHH
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-----HHHHHH
Confidence 9999999999999999888888887643 234567788889999999999999999999999875432 233 79
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh---hHHHHH-------hhcCCHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 000275 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERS-------IEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 517 (1739)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge---~~l~~~-------l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~ 517 (1739)
+.+.++++|+++.|+-+|..++..+ +.-.. ..+..+ +...++--.-++-.++....
T Consensus 155 ~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~------------- 220 (526)
T PF01602_consen 155 PKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA------------- 220 (526)
T ss_dssp HHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST-------------
T ss_pred HHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcc-------------
Confidence 9999999999999999999999888 21111 111111 12223333333333332210
Q ss_pred CCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 000275 518 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESR 597 (1739)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~ 597 (1739)
...+++...
T Consensus 221 ----------------------------------------------------------------------~~~~~~~~~- 229 (526)
T PF01602_consen 221 ----------------------------------------------------------------------PMEPEDADK- 229 (526)
T ss_dssp ----------------------------------------------------------------------SSSHHHHHH-
T ss_pred ----------------------------------------------------------------------cCChhhhhH-
Confidence 001111110
Q ss_pred HhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCC
Q 000275 598 LGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF 677 (1739)
Q Consensus 598 ~~~l~~~~i~~~L~~~~WK~Rl~a~e~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~f 677 (1739)
..+-+.+...|.++++-.+++++.-+...-....-.....+.+++++. =+|.|.+ --+++.+..++.....+
T Consensus 230 --~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~----s~~~nvr--~~~L~~L~~l~~~~~~~ 301 (526)
T PF01602_consen 230 --NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS----SSDPNVR--YIALDSLSQLAQSNPPA 301 (526)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT----SSSHHHH--HHHHHHHHHHCCHCHHH
T ss_pred --HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh----cccchhe--hhHHHHHHHhhcccchh
Confidence 122245567777999999999999887443332212233455666653 1344444 45677777766543111
Q ss_pred CccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchH
Q 000275 678 PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLK 757 (1739)
Q Consensus 678 s~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K 757 (1739)
-. .....+ ..+..--|.-+|..+-++|..++.......|+.++++++.+...+.++.+++.-++.+...|. -+.+
T Consensus 302 v~-~~~~~~-~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~---~~~~ 376 (526)
T PF01602_consen 302 VF-NQSLIL-FFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP---PDAE 376 (526)
T ss_dssp HG-THHHHH-HHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG---SSHH
T ss_pred hh-hhhhhh-heecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC---chHH
Confidence 11 111111 223334455678899999999999999999999999997556688899999999999888883 3445
Q ss_pred hHHHHHhhhcCCCccHHHHHHHHHH
Q 000275 758 DLIDFCKDTGLQSSAAATRNATIKL 782 (1739)
Q Consensus 758 ~li~~~k~~~l~~sN~~VR~aAi~L 782 (1739)
..++.+-+. +...+..|+..++..
T Consensus 377 ~~v~~l~~l-l~~~~~~~~~~~~~~ 400 (526)
T PF01602_consen 377 WYVDTLLKL-LEISGDYVSNEIINV 400 (526)
T ss_dssp HHHHHHHHH-HHCTGGGCHCHHHHH
T ss_pred HHHHHHHHh-hhhccccccchHHHH
Confidence 555555555 444444444444443
No 17
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.00041 Score=85.51 Aligned_cols=279 Identities=15% Similarity=0.181 Sum_probs=202.1
Q ss_pred cchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-----
Q 000275 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----- 968 (1739)
Q Consensus 894 geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g----- 968 (1739)
.++++-|+.|+.+.|.+.-+--+.++..+=..=+-.|-.|.--++++++.+|+|+-..||+-+-.+|+.+....-
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 789999999999999999999999999998888888999999999999999999999999999999998887753
Q ss_pred --hhhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC--cchhhhhhHHhhhcCCCCH-HHHHHHHHHHHHHHHhc
Q 000275 969 --LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSS-DVRKAAEACIVEILRAG 1043 (1739)
Q Consensus 969 --l~~~~~~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~~~--~~~~~~~~p~~~~L~Dr~~-dVRkaA~~~L~~~m~~~ 1043 (1739)
++.+.+.+..-+.++ +|+.+.-++.|+.+.++-.+.. +-...++..+.-|+.|.-. ..+..|+.+-+.+|+.+
T Consensus 246 ~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 246 MDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 233334333333433 6889999999999988665542 2334455567779988877 58888887777777765
Q ss_pred CHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchh
Q 000275 1044 GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQD 1123 (1739)
Q Consensus 1044 G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1123 (1739)
+.+.-... ++ ...|
T Consensus 324 s~~~~~~~---id---~~~i------------------------------------------------------------ 337 (675)
T KOG0212|consen 324 SSERLKEE---ID---YGSI------------------------------------------------------------ 337 (675)
T ss_pred hhhhhccc---cc---hHHH------------------------------------------------------------
Confidence 54432211 00 0001
Q ss_pred hhhhhhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChh
Q 000275 1124 FAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRK 1203 (1739)
Q Consensus 1124 ~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~ 1203 (1739)
+|- +..++++..-..++++++-+.-.....+-
T Consensus 338 ------------------------------------i~v------------l~~~l~~~~~~tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 338 ------------------------------------IEV------------LTKYLSDDREETRIAVLNWIILLYHKAPG 369 (675)
T ss_pred ------------------------------------HHH------------HHHHhhcchHHHHHHHHHHHHHHHhhCcc
Confidence 111 12223333334567777766666666666
Q ss_pred hhhHhHHHHHHHHHHhccCcchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHH
Q 000275 1204 DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQI 1283 (1739)
Q Consensus 1204 ~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~ 1283 (1739)
+++...|=||--+..-+.|+.-.|+.+.|+++.++-.-=...+| --|+-.|++-.-+-+--++.+=-=|+|++
T Consensus 370 ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~-------~~fl~sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 370 QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL-------RKFLLSLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH-------HHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 67766777777766677899999999999999877655444444 56777777777665545666666799999
Q ss_pred hhccCccchHHH
Q 000275 1284 VNFYSATKTLPY 1295 (1739)
Q Consensus 1284 ~~vyp~skvf~~ 1295 (1739)
|..-.+.+||.-
T Consensus 443 C~lL~aE~IYr~ 454 (675)
T KOG0212|consen 443 CLLLNAERIYRS 454 (675)
T ss_pred HHHhCHHHHHHH
Confidence 999999999987
No 18
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.37 E-value=2e-05 Score=107.54 Aligned_cols=242 Identities=20% Similarity=0.207 Sum_probs=163.6
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhC--chhH
Q 000275 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--PDIK 795 (1739)
Q Consensus 718 V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G--~~l~ 795 (1739)
.++.|++.+ ++.+|.||..++.+|... |- ...++.+..+ |.+.|+.||.+|+..|+.+=.... +.+.
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~----~~-----~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTET----TP-----PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhh----cc-----hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 455667664 799999999999988764 32 3456666677 999999999999999876622111 1222
Q ss_pred hhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcccccccCcHHHHhhcCCCChHHHHHHHH
Q 000275 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1739)
Q Consensus 796 ~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe 875 (1739)
..|++-.|-.....=.-+... .. + -+..|+..+.|++|-+|.+|+.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~--------------------------------~~-~-~~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRAL--------------------------------RA-G-DAALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhh--------------------------------cc-C-CHHHHHHHhcCCCHHHHHHHHH
Confidence 333222111111111111110 00 0 0235778899999999999999
Q ss_pred HHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHhccCchhHHHH
Q 000275 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (1739)
Q Consensus 876 ~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~a 955 (1739)
++..+= + ..+|...+.|.|.-|...++..++.+...-. .-++.++..++|..+.||.+
T Consensus 737 aL~~~~-------------~-~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 737 ALVSVD-------------D-VESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHhccc-------------C-cHHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHH
Confidence 987531 1 2356678999999988888887776644211 12677888899999999999
Q ss_pred HHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHH
Q 000275 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (1739)
Q Consensus 956 a~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~ 1035 (1739)
|+.+|..+... ....+.+..+|.++ ++.+|.+...-|.+ +.. ...+.+++.+|.|.+.+||+.|-.+
T Consensus 795 A~~aLg~~g~~---~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~----l~~----~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 795 ALAALAELGCP---PDDVAAATAALRAS--AWQVRQGAARALAG----AAA----DVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHHhcCCc---chhHHHHHHHhcCC--ChHHHHHHHHHHHh----ccc----cchHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999877332 23345677888865 57899988877753 221 2344678889999999999999999
Q ss_pred HHHH
Q 000275 1036 IVEI 1039 (1739)
Q Consensus 1036 L~~~ 1039 (1739)
|+.+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 9875
No 19
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=0.00022 Score=89.55 Aligned_cols=309 Identities=15% Similarity=0.186 Sum_probs=198.0
Q ss_pred chhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcccC-hhHHHHHHHHHHHHHHhhCCc-
Q 000275 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD-QNVRASSKGLTLELCRWIGKD- 202 (1739)
Q Consensus 125 ~~~~v~e~ll~~~~~K~PKvv~a~i~~l~~~l~~FG~k~v~~K~ilk~l~~lf~~~d-k~VR~ea~~L~velyrwlG~~- 202 (1739)
+.+.+.+.+.+.++.=.-.-...+...+...++.+|...+..-.++..+-+...+.+ ...|+.+.--....+..+|+.
T Consensus 131 ~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~ 210 (569)
T KOG1242|consen 131 SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF 210 (569)
T ss_pred CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC
Confidence 334445555555542223334556666667777777777777777777777766654 344547777777777777731
Q ss_pred --hhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCccc
Q 000275 203 --PVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 280 (1739)
Q Consensus 203 --~lk~~L~~~Lkp~q~keLe~efek~~~~~~p~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vd 280 (1739)
-+.+.| .. - | .+. |...+ ..|..+.. +...-+.. +++| -
T Consensus 211 EPyiv~~l-p~----i---l----~~~-~d~~~--~Vr~Aa~~-a~kai~~~-----------------~~~~------a 251 (569)
T KOG1242|consen 211 EPYIVPIL-PS----I---L----TNF-GDKIN--KVREAAVE-AAKAIMRC-----------------LSAY------A 251 (569)
T ss_pred CchHHhhH-HH----H---H----HHh-hccch--hhhHHHHH-HHHHHHHh-----------------cCcc------h
Confidence 122322 10 0 0 011 00111 11211110 00000000 1111 1
Q ss_pred ccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccc
Q 000275 281 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH 359 (1739)
Q Consensus 281 Il~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~ 359 (1739)
|=.-+| .....+...||+++..+|+-+-.+.. .|+--..-..+++..|.+++.|+...|--.+.+|+..+..-....
T Consensus 252 VK~llp--sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~ 329 (569)
T KOG1242|consen 252 VKLLLP--SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP 329 (569)
T ss_pred hhHhhh--hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH
Confidence 111123 24455555599999999999887665 444334457789999999999999999999999999999998843
Q ss_pred ccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc------CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 000275 360 FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG------CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (1739)
Q Consensus 360 F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~------~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~ 433 (1739)
-...++|.+++.+.|-+..+.+ |++.+...+ .-+|+-+++.+.-++....-.+|..|..-+-..-.-
T Consensus 330 ---dI~~~ip~Lld~l~dp~~~~~e----~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L 402 (569)
T KOG1242|consen 330 ---DIQKIIPTLLDALADPSCYTPE----CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL 402 (569)
T ss_pred ---HHHHHHHHHHHHhcCcccchHH----HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence 3677899999999999977774 555554431 134666777778899888877776655544333322
Q ss_pred C-ChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000275 434 S-SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1739)
Q Consensus 434 ~-~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l 481 (1739)
. .+..+.+++..++|.+-+.+.|..|+||.-++.+||++.+-+|++.+
T Consensus 403 veDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 403 VEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred hcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 2 34556677888999999999999999999999999999999998765
No 20
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=3.4e-05 Score=103.05 Aligned_cols=564 Identities=18% Similarity=0.207 Sum_probs=334.6
Q ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCCh-hHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHH
Q 000275 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482 (1739)
Q Consensus 404 ~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~-~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~ 482 (1739)
+.+.+.....+.||..|...+-||--.+..... ....-.++.|.-.++..|.|.++=+.|-|...||.++-+-|.. +
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~-~- 896 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS-L- 896 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch-h-
Confidence 345555677899999999999999888876531 1122234778899999999999999999999999888766532 2
Q ss_pred HHhhcCCHHHHHHHHHHH----hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCC
Q 000275 483 RSIEKLDDVRRNKLSEMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGG 558 (1739)
Q Consensus 483 ~~l~~Ld~~kk~KI~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~ 558 (1739)
|+.-+...+ +|.+. . .+-..... ...
T Consensus 897 ---------k~~LV~sL~~tl~~Gkr~-------~------------~~vs~eTe-------lFq--------------- 926 (1702)
T KOG0915|consen 897 ---------KKSLVDSLVNTLTGGKRK-------A------------IKVSEETE-------LFQ--------------- 926 (1702)
T ss_pred ---------HHHHHHHHHHHHhccccc-------c------------ceeccchh-------ccc---------------
Confidence 222222222 22110 0 00000000 000
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHH---Hhhhh--ccHHHHHHHHHHHHHHHHh-h
Q 000275 559 PVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV---GQLKS--AVWKERLEAISSLRQQVEA-V 632 (1739)
Q Consensus 559 ~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~---~~L~~--~~WK~Rl~a~e~l~~~v~~-~ 632 (1739)
.|+-+..+ .+ ..--+.-|+...++++-.+|++ -+|.. +-|.-|+.|.=.+....+. .
T Consensus 927 ---~G~Lg~Tp---~G-----------g~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~ 989 (1702)
T KOG0915|consen 927 ---EGTLGKTP---DG-----------GKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAG 989 (1702)
T ss_pred ---CCcCCCCC---CC-----------CcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHH
Confidence 00000000 00 0011578999999999999986 44443 4499999988777655544 3
Q ss_pred hccchhH-HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccc--hhhhHHHHHHHHH
Q 000275 633 QNLDQSV-EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTF 709 (1739)
Q Consensus 633 ~~~~~~~-~~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~~~ 709 (1739)
+...+.. +++-|..... -|.|..|++.|.+|-..+..-...........++..+..-+++. ++|+.++-+|..+
T Consensus 990 ~kl~p~l~kLIPrLyRY~---yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dL 1066 (1702)
T KOG0915|consen 990 EKLEPYLKKLIPRLYRYQ---YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADL 1066 (1702)
T ss_pred HhhhhHHHHhhHHHhhhc---cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 3333332 3444443311 58999999999999998876434455666677888888888886 7899988888777
Q ss_pred HHhhchHhHHHHH-------HHhhhhcCC-hhh-HHHHHHHHHHHHHHhccC--ccc----hHhHHHHHhhhcCCCccHH
Q 000275 710 SEAVGPGFIFERL-------YKIMKDHKN-PKV-LSEGILWMVSAVEDFGVS--HLK----LKDLIDFCKDTGLQSSAAA 774 (1739)
Q Consensus 710 aE~~~~~~V~~~l-------~~~~~~~Kn-PKv-~~e~l~wl~~~i~eFG~~--~l~----~K~li~~~k~~~l~~sN~~ 774 (1739)
-..-..+-+.+.+ +..+-..|- -+. -..++..++..+-.-+-. +.. +..++.|+-+-|..|+=+.
T Consensus 1067 l~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~e 1146 (1702)
T KOG0915|consen 1067 LQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNE 1146 (1702)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHH
Confidence 6655554444433 333322221 111 112344444444333311 111 2356667755567799999
Q ss_pred HHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcC-CCCCCCCCccc----------cccccCcCCCCCC---
Q 000275 775 TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN-PFEGTVVPKKT----------VRASESTSSVSSG--- 840 (1739)
Q Consensus 775 VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~-~~~~~p~p~R~----------~r~~~~~~~~~~~--- 840 (1739)
||..+|+++..|-++-|..|++|+.++-|.++.....-=.-+ .+ -..|- .|.+. +.++.
T Consensus 1147 vr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnY----ls~r~~~~e~ealDt~R~s~---aksspmme 1219 (1702)
T KOG0915|consen 1147 VRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNY----LSLRLINIETEALDTLRASA---AKSSPMME 1219 (1702)
T ss_pred HHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHH----HHHhhhhhHHHHHHHHHHhh---hcCCcHHH
Confidence 999999999999999999999999999999887643210000 00 00111 11110 11111
Q ss_pred -CCCCCCccccc--ccCcHHHHhhc-CCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHH
Q 000275 841 -GSDGLPREDIS--GKFTPTLVKSL-ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916 (1739)
Q Consensus 841 -~~d~lprvDIs--~kit~~l~~~l-~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al 916 (1739)
.++.++-+|++ .+|+|.+.+-+ ++-.--+|--.-.=|--+...-..-++|-. |-|+++|=--++|-|.++...-.
T Consensus 1220 Ti~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al~~g~~dRNesv~kafA 1298 (1702)
T KOG0915|consen 1220 TINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRALFPGAKDRNESVRKAFA 1298 (1702)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHHhhccccccHHHHHHHH
Confidence 13446666664 45556555443 333344444333334334444456788876 99999999999999999999988
Q ss_pred HHHHHHHHhcCh-hhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHH-Hhc--chhhhhHHHHHHHh-cccCCcchHH
Q 000275 917 ITLGAVASAMGP-AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL-AAV--HLDKMVPYVTTALT-DAKLGAEGRK 991 (1739)
Q Consensus 917 ~ii~~lA~amG~-~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~-~~~--gl~~~~~~i~~~L~-~~~~~p~~r~ 991 (1739)
+-+|.++..-.+ .+.++...++..+++...+.+ .++-+.+.=+.... +.. ..+.++|.+.=+.- ..+.|.+++.
T Consensus 1299 sAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~-siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~ 1377 (1702)
T KOG0915|consen 1299 SAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK-SISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWN 1377 (1702)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc-chhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999988887 689999999999999988888 44433333133222 222 24677775554443 2244555666
Q ss_pred HHHHHHHHHhccCCCC-c-chhhhhhHHh-hhcCCCCHHHHHHHHHHHH----HHHHhcCHHHHHHH
Q 000275 992 DLFDWLSKQLTGLSGF-P-DAAHLLKPAS-IAMTDKSSDVRKAAEACIV----EILRAGGQETIEKN 1051 (1739)
Q Consensus 992 e~l~wl~~~l~~~~~~-~-~~~~~~~p~~-~~L~Dr~~dVRkaA~~~L~----~~m~~~G~~~~~~~ 1051 (1739)
++|.= ..+..... + -....+-+++ ..+++-.=-+|+.+..++- .+-..++++...+.
T Consensus 1378 dvW~e---~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl 1441 (1702)
T KOG0915|consen 1378 DVWAE---LVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKL 1441 (1702)
T ss_pred HHHHH---hCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHH
Confidence 66532 22222211 1 1122233322 2334444456665555443 33445566655554
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.21 E-value=9.7e-05 Score=100.94 Aligned_cols=260 Identities=19% Similarity=0.156 Sum_probs=167.5
Q ss_pred cchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHH
Q 000275 695 DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAA 774 (1739)
Q Consensus 695 D~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~~~k~~~l~~sN~~ 774 (1739)
|+.+|..|.+.|..+. +.-++..|... .+..++.|+..++.-|..+.+... ... .+... |++.||.
T Consensus 634 d~~VR~~Av~~L~~~~----~~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~----~~~----~L~~~-L~~~d~~ 699 (897)
T PRK13800 634 DPGVRRTAVAVLTETT----PPGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLP----PAP----ALRDH-LGSPDPV 699 (897)
T ss_pred CHHHHHHHHHHHhhhc----chhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccC----chH----HHHHH-hcCCCHH
Confidence 3567777777766553 23345555554 478888898888777655432111 112 23344 7888999
Q ss_pred HHHHHHHHHHHHHhhhCch--hHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcccccc
Q 000275 775 TRNATIKLLGALHKFVGPD--IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 852 (1739)
Q Consensus 775 VR~aAi~Ll~~ly~~~G~~--l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~ 852 (1739)
||.+|+..|+.+.. |+. +...|.|..|.+....=.-..++ ..
T Consensus 700 VR~~A~~aL~~~~~--~~~~~l~~~L~D~d~~VR~~Av~aL~~~-----------------------------~~----- 743 (897)
T PRK13800 700 VRAAALDVLRALRA--GDAALFAAALGDPDHRVRIEAVRALVSV-----------------------------DD----- 743 (897)
T ss_pred HHHHHHHHHHhhcc--CCHHHHHHHhcCCCHHHHHHHHHHHhcc-----------------------------cC-----
Confidence 99999988887642 221 11122222222111111111110 00
Q ss_pred cCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHh
Q 000275 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932 (1739)
Q Consensus 853 kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k 932 (1739)
.+.++.-+.|.++-+|.++.+.|..+-+.. ..-...|...+.|.+..|...|+.-++.+ |.+
T Consensus 744 --~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~----g~~--- 805 (897)
T PRK13800 744 --VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAEL----GCP--- 805 (897)
T ss_pred --cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhc----CCc---
Confidence 134667799999999999999998765321 22356677778999988888888877665 211
Q ss_pred hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhh
Q 000275 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012 (1739)
Q Consensus 933 ~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~~~~~~~~ 1012 (1739)
..+.+.++..|.|....||.+|..+|... |-..-++.+..+|.++ ++.+|.++..=|.+. ... ..
T Consensus 806 --~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~----~~~---~~ 870 (897)
T PRK13800 806 --PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDP--HLDVRKAAVLALTRW----PGD---PA 870 (897)
T ss_pred --chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCC--CHHHHHHHHHHHhcc----CCC---HH
Confidence 12335688999999999999999999654 4455667888889876 588999998887752 111 12
Q ss_pred hhhHHhhhcCCCCHHHHHHHHHHHH
Q 000275 1013 LLKPASIAMTDKSSDVRKAAEACIV 1037 (1739)
Q Consensus 1013 ~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1739)
...++...|+|.+++||+.|..+|.
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 3344667889999999999999885
No 22
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.07 E-value=0.037 Score=70.37 Aligned_cols=337 Identities=19% Similarity=0.256 Sum_probs=236.9
Q ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccc-ccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc----
Q 000275 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---- 397 (1739)
Q Consensus 323 y~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~-F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~---- 397 (1739)
...|++.+..+|..--..|-+.|++.++.||.-|..- =.+-...+-..+.|.++|-=|.|.-.+..||-+|+...
T Consensus 797 lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 797 LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 4578888888999888899999999999999999743 11233444556789999999999999999999998751
Q ss_pred -CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHH---HHhhhCCCCHHHHHHHHHHHHHHH
Q 000275 398 -CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI---CMECLNDGTPEVRDAAFSVLAAIA 473 (1739)
Q Consensus 398 -~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~---l~k~l~Ds~~~VR~aa~~~l~~l~ 473 (1739)
.-++.++++.+...|+||.-.|...+..++.+.-.+.+.-.. .+.++-+ ++..|---+.++|.+|.+.||-|.
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~---aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVS---AREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 124678999999999999999999999999988776543221 1444444 445567788999999999999999
Q ss_pred HHhC-hhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCC
Q 000275 474 KSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552 (1739)
Q Consensus 474 k~~G-e~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 552 (1739)
+.+| .+.+..++++|+ ++|.-.... +.-.- +-
T Consensus 954 kaIGPqdVLatLlnnLk------vqeRq~Rvc----TtvaI-------------------------------------aI 986 (1172)
T KOG0213|consen 954 KAIGPQDVLATLLNNLK------VQERQNRVC----TTVAI-------------------------------------AI 986 (1172)
T ss_pred HhcCHHHHHHHHHhcch------HHHHHhchh----hhhhh-------------------------------------hh
Confidence 9999 466777778885 333322210 00000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 000275 553 ASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV 632 (1739)
Q Consensus 553 ~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~~~~WK~Rl~a~e~l~~~v~~~ 632 (1739)
+ . +...+ +
T Consensus 987 V------------------------a---E~c~p--F------------------------------------------- 994 (1172)
T KOG0213|consen 987 V------------------------A---ETCGP--F------------------------------------------- 994 (1172)
T ss_pred h------------------------h---hhcCc--h-------------------------------------------
Confidence 0 0 00000 0
Q ss_pred hccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccch--hhhHHHHHHHHHH
Q 000275 633 QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFS 710 (1739)
Q Consensus 633 ~~~~~~~~~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~a 710 (1739)
.+|--.+ -.+.-.|..||+.+|..++.+.+.-+..++..++.++|-+-|-+.|.- .|..+..++.-++
T Consensus 995 -------tVLPalm---neYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 995 -------TVLPALM---NEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred -------hhhHHHH---hhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 0011111 124556788999999999999998788899999999999999999854 5777777776665
Q ss_pred HhhchHhH----HHHHHHhhhh---cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHH
Q 000275 711 EAVGPGFI----FERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLL 783 (1739)
Q Consensus 711 E~~~~~~V----~~~l~~~~~~---~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~~~k~~~l~~sN~~VR~aAi~Ll 783 (1739)
=- .+++- +-+++..+.- --+|-|++.....|- -|-. .+.+..+..|+-. ||=|.-..||..=-+.+
T Consensus 1065 Lg-~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~e----g~r~-~Lg~~~~~~Y~~Q-GLFHParkVR~~yw~vy 1137 (1172)
T KOG0213|consen 1065 LG-VPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAME----GLRV-ALGPQAMLKYCLQ-GLFHPARKVRKRYWTVY 1137 (1172)
T ss_pred cC-CCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHH----HHHH-HhchHHHHHHHHH-hccCcHHHHHHHHHHHH
Confidence 32 22222 2233332221 236777765554433 3333 3455688999988 59999999999999999
Q ss_pred HHHHhhhCchhHhhh
Q 000275 784 GALHKFVGPDIKGFL 798 (1739)
Q Consensus 784 ~~ly~~~G~~l~~~l 798 (1739)
-.||.+-.++|-.++
T Consensus 1138 n~my~~~~dalv~~y 1152 (1172)
T KOG0213|consen 1138 NSMYHGSQDALVACY 1152 (1172)
T ss_pred HhHhhcccchhhhcc
Confidence 999988888888776
No 23
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.03 E-value=0.0019 Score=83.27 Aligned_cols=391 Identities=16% Similarity=0.153 Sum_probs=255.9
Q ss_pred hhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHH
Q 000275 291 WEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (1739)
Q Consensus 291 ~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp 369 (1739)
..-+.+++-.+|+=+-=.+..+.. ++- -.-=.+..|.+=+.|.|-.+...|+++++.++. ...+..+++
T Consensus 48 i~l~~s~~~~~Krl~yl~l~~~~~~~~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~ 117 (526)
T PF01602_consen 48 IKLISSKDLELKRLGYLYLSLYLHEDPE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIP 117 (526)
T ss_dssp HCTCSSSSHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHH
Confidence 444567888888876665555432 111 122367788888889999999999999999982 345678899
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHH
Q 000275 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (1739)
Q Consensus 370 ~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~-~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~ 448 (1739)
.+..-+.++.+.||.++.-|+-.++....-.+.+ +++.+...+.+++|.|+..++..+..+ ..++.....++..+..
T Consensus 118 ~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~ 195 (526)
T PF01602_consen 118 DVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIR 195 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHH
Confidence 9999999999999999999999998862223445 688999999999999999999999988 3333332244566677
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH-HHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCC
Q 000275 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVE 527 (1739)
Q Consensus 449 ~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l-~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1739)
.+.+.+.+.+|-++-....+|..+...--+..- ..+++ .+.+++...
T Consensus 196 ~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~--------~l~~~l~s~------------------------ 243 (526)
T PF01602_consen 196 ILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIE--------PLLNLLQSS------------------------ 243 (526)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHH--------HHHHHHHHH------------------------
T ss_pred HhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHH--------HHHHHhhcc------------------------
Confidence 777788999999877766665543322111110 01111 111111110
Q ss_pred CcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHH
Q 000275 528 ASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607 (1739)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~ 607 (1739)
..++.-+...... ....+.+ +...+-.-+.
T Consensus 244 ---~~~V~~e~~~~i~------------------------------------------~l~~~~~-----~~~~~~~~L~ 273 (526)
T PF01602_consen 244 ---SPSVVYEAIRLII------------------------------------------KLSPSPE-----LLQKAINPLI 273 (526)
T ss_dssp ---HHHHHHHHHHHHH------------------------------------------HHSSSHH-----HHHHHHHHHH
T ss_pred ---ccHHHHHHHHHHH------------------------------------------HhhcchH-----HHHhhHHHHH
Confidence 0000000000000 0000111 1122234567
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhc
Q 000275 608 GQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCL 686 (1739)
Q Consensus 608 ~~L~~~~WK~Rl~a~e~l~~~v~~~-~~~~~~~~~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l 686 (1739)
..|.++++-.|.-+++.+....... +... ..++.+..+. .+.+..|-...++++..+++. ..+..++
T Consensus 274 ~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~-----~~~d~~Ir~~~l~lL~~l~~~------~n~~~Il 341 (526)
T PF01602_consen 274 KLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL-----YDDDPSIRKKALDLLYKLANE------SNVKEIL 341 (526)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH-----CSSSHHHHHHHHHHHHHH--H------HHHHHHH
T ss_pred HHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheec-----CCCChhHHHHHHHHHhhcccc------cchhhHH
Confidence 8888999999999999998776664 2222 3444444443 467788999999999998864 2445566
Q ss_pred cchhhccc---cchhhhHHHHHHHHHHHhhc--hHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHH
Q 000275 687 LGISERVA---DIKTRAHAMKCLTTFSEAVG--PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (1739)
Q Consensus 687 ~~lveKlg---D~K~r~~a~e~L~~~aE~~~--~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~ 761 (1739)
..+..-+. |.-.+..+...+..+|+... .+|.+..+++.+ ...++-+..+++..+...+....-. -..++.
T Consensus 342 ~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll-~~~~~~~~~~~~~~i~~ll~~~~~~---~~~~l~ 417 (526)
T PF01602_consen 342 DELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL-EISGDYVSNEIINVIRDLLSNNPEL---REKILK 417 (526)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH-HCTGGGCHCHHHHHHHHHHHHSTTT---HHHHHH
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh-hhccccccchHHHHHHHHhhcChhh---hHHHHH
Confidence 66666663 55688888889999999765 467888888875 6778899999999999999774321 122344
Q ss_pred HHhhhcCC-CccHHHHHHHHHHHHHHHhhhCc
Q 000275 762 FCKDTGLQ-SSAAATRNATIKLLGALHKFVGP 792 (1739)
Q Consensus 762 ~~k~~~l~-~sN~~VR~aAi~Ll~~ly~~~G~ 792 (1739)
.+-+. +. -.++.++.+++-++|+---++..
T Consensus 418 ~L~~~-l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 418 KLIEL-LEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHH-HTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred HHHHH-HHHhhHHHHHHHHHhhhcccCCcccc
Confidence 43333 33 47888999999999997777666
No 24
>PTZ00429 beta-adaptin; Provisional
Probab=97.96 E-value=0.011 Score=78.62 Aligned_cols=348 Identities=13% Similarity=0.155 Sum_probs=207.6
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhhHHHHHHHHHhhhc-CChhhHHHHHHHHHHHHhhcc----hhhHHH
Q 000275 57 FKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA----VDVFLD 131 (1739)
Q Consensus 57 ~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~~~~~~~~lveK~L~-~r~~tk~~a~e~~l~~vE~e~----~~~v~e 131 (1739)
+.|-+.|.|...+--||-++..+- .....+. +-.-+.||++ ..|-.++.|.=|++.+..... ...+++
T Consensus 110 l~KDl~d~Np~IRaLALRtLs~Ir------~~~i~e~-l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~ 182 (746)
T PTZ00429 110 FLQDTTNSSPVVRALAVRTMMCIR------VSSVLEY-TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKK 182 (746)
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCC------cHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHH
Confidence 344555666665555555442211 0011111 2223578887 468888888888887765422 124667
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHhhC------------------------------------CCc-cChhHHHhhch
Q 000275 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFG------------------------------------AKI-IPPKRILKMLP 174 (1739)
Q Consensus 132 ~ll~~~~~K~PKvv~a~i~~l~~~l~~FG------------------------------------~k~-v~~K~ilk~l~ 174 (1739)
.|...+..++|-|++.|+.++.++-.+.+ +.- -....|+..+-
T Consensus 183 ~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~ 262 (746)
T PTZ00429 183 DLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVL 262 (746)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 78888999999999999999988854321 000 00234677777
Q ss_pred hhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchh--hhHHhHhhhhhhccc
Q 000275 175 ELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKI--RAEQDKELGQELISE 252 (1739)
Q Consensus 175 ~lf~~~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~p~R~~--Rs~q~~~~~~~~~~~ 252 (1739)
+.+.|+|.+|-=+|.+++..+...+.++.++ ..+..+++.++. | ....+-.||+ |.-..-..
T Consensus 263 ~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~-~~~~rl~~pLv~-L-------~ss~~eiqyvaLr~I~~i~~------- 326 (746)
T PTZ00429 263 PRMSHQNPAVVMGAIKVVANLASRCSQELIE-RCTVRVNTALLT-L-------SRRDAETQYIVCKNIHALLV------- 326 (746)
T ss_pred HHhcCCCHHHHHHHHHHHHHhcCcCCHHHHH-HHHHHHHHHHHH-h-------hCCCccHHHHHHHHHHHHHH-------
Confidence 8888999999999999888776655443332 233445444432 1 1122334443 22211000
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHH
Q 000275 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKK 332 (1739)
Q Consensus 253 ~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk 332 (1739)
..| +++..-- .-|+-...++.- -|.+.||-|..+++ +.|..++++.|+.
T Consensus 327 -----------------~~P-------~lf~~~~-~~Ff~~~~Dp~y-IK~~KLeIL~~Lan-----e~Nv~~IL~EL~e 375 (746)
T PTZ00429 327 -----------------IFP-------NLLRTNL-DSFYVRYSDPPF-VKLEKLRLLLKLVT-----PSVAPEILKELAE 375 (746)
T ss_pred -----------------HCH-------HHHHHHH-HhhhcccCCcHH-HHHHHHHHHHHHcC-----cccHHHHHHHHHH
Confidence 001 1111111 257777777765 69999999988753 3467899999999
Q ss_pred HhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHH-------------------
Q 000275 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAM------------------- 393 (1739)
Q Consensus 333 ~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~------------------- 393 (1739)
.+.|.+..++..++++||.+|..+ ...+..++..+++-+..+-.-+.+++ ..+-.+
T Consensus 376 Ya~d~D~ef~r~aIrAIg~lA~k~----~~~a~~cV~~Ll~ll~~~~~~v~e~i-~vik~IlrkyP~~~il~~L~~~~~~ 450 (746)
T PTZ00429 376 YASGVDMVFVVEVVRAIASLAIKV----DSVAPDCANLLLQIVDRRPELLPQVV-TAAKDIVRKYPELLMLDTLVTDYGA 450 (746)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhC----hHHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHHCccHHHHHHHHHhhcc
Confidence 999999999999999999999764 44566667777666655433333222 111111
Q ss_pred ----------------HHhcCCChh---hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHH-hh
Q 000275 394 ----------------HKAGCLNLV---DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICM-EC 453 (1739)
Q Consensus 394 ----------------~~~~~~~l~---~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~-k~ 453 (1739)
.+| |.-++ ++++.+...+....+.||.+++.-..+++-..+... +..+..++ .+
T Consensus 451 ~~i~e~~AKaaiiWILGEy-~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~-----~~~l~~vL~~~ 524 (746)
T PTZ00429 451 DEVVEEEAKVSLLWMLGEY-CDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGM-----EPQLNRVLETV 524 (746)
T ss_pred cccccHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHHH
Confidence 111 21121 233333333345678899999988888887665322 22233333 44
Q ss_pred h-CCCCHHHHHHHHHHH
Q 000275 454 L-NDGTPEVRDAAFSVL 469 (1739)
Q Consensus 454 l-~Ds~~~VR~aa~~~l 469 (1739)
. +|.++||||-|+.-.
T Consensus 525 t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 525 TTHSDDPDVRDRAFAYW 541 (746)
T ss_pred HhcCCChhHHHHHHHHH
Confidence 3 568899999999643
No 25
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.93 E-value=0.021 Score=75.46 Aligned_cols=183 Identities=19% Similarity=0.174 Sum_probs=132.4
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcc-cCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhhhh
Q 000275 857 TLVKSLESPDWKVRLESIEAVNKILEEAN-KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1739)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~an-krI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k 935 (1739)
.+..--+|.+|.+|.+.++-+-.++.+-. .++-+. ++++ +..=+.|-=--+---|.+++..++...|+.+ +..
T Consensus 483 ~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~-~~~l---~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w--~~~ 556 (759)
T KOG0211|consen 483 AIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEK-LAEL---LRTWLPDHVYSIREAAARNLPALVETFGSEW--ARL 556 (759)
T ss_pred hhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHH-HHHH---HHhhhhhhHHHHHHHHHHHhHHHHHHhCcch--hHH
Confidence 34555677799999999999988876532 111121 1222 2222444444555667888888999999433 455
Q ss_pred hhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHH----hcccCCcchHHHHHHHHHHHhccCCCCcchh
Q 000275 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011 (1739)
Q Consensus 936 ~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L----~~~~~~p~~r~e~l~wl~~~l~~~~~~~~~~ 1011 (1739)
.+.|-++...++..-.+|.+...++..++..+|-+-..+++...+ .++ +|+.|-.++..|.+-++.+.. +...
T Consensus 557 ~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~L~~i~~~L~~-~~~~ 633 (759)
T KOG0211|consen 557 EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKHLPKILKLLDE-SVRD 633 (759)
T ss_pred HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHHHHHHHhhcch-HHHH
Confidence 688999999999888999999999999999999666555444444 344 578999999999887776654 4466
Q ss_pred hhhhHHhhhc-CCCCHHHHHHHHHHHHHHHHhcCHHHH
Q 000275 1012 HLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQETI 1048 (1739)
Q Consensus 1012 ~~~~p~~~~L-~Dr~~dVRkaA~~~L~~~m~~~G~~~~ 1048 (1739)
..+.|+..+| .|-+.|||-.|..+.+.++-+.-|..+
T Consensus 634 ~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~~ 671 (759)
T KOG0211|consen 634 EEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESSL 671 (759)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhhH
Confidence 7788877766 799999999999999988776655543
No 26
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.92 E-value=0.021 Score=71.30 Aligned_cols=565 Identities=18% Similarity=0.197 Sum_probs=323.2
Q ss_pred ccCchhHHHHHHHHHHHHHhhCCCccC-hhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhH------HHhhh
Q 000275 139 NKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT------ILFEK 211 (1739)
Q Consensus 139 ~K~PKvv~a~i~~l~~~l~~FG~k~v~-~K~ilk~l~~lf~~~dk~VR~ea~~L~velyrwlG~~~lk~------~L~~~ 211 (1739)
.|.-+..-.||-++.++-.-.|..+++ ++++++.+.+++.+...-||=-+.+-+-.+..-.||--+.. .|+++
T Consensus 328 rkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g 407 (975)
T COG5181 328 RKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEG 407 (975)
T ss_pred ccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 468899999999999999999999886 99999999999999999999888888888888888622211 12222
Q ss_pred chHHHHHHHHHHHHhcCCCCC----Cc---chhhhHHhHhhhhhhcccCCCCCCCCC------CCCCCCCCCCccccCCc
Q 000275 212 MRDTMKKELEVELVNVSGTAR----PT---RKIRAEQDKELGQELISEDVGPGPSEE------STADVPPEIDEYELVDP 278 (1739)
Q Consensus 212 Lkp~q~keLe~efek~~~~~~----p~---R~~Rs~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~iDp~dl~~~ 278 (1739)
...--=++|-... |.-|-.- |. -++|...+- .-.+-. +.++..-. .-=+..+.+||+-|.+.
T Consensus 408 ~~~hrgk~l~sfL-kA~g~iiplm~peYa~h~tre~m~i-v~ref~---spdeemkk~~l~v~~~C~~v~~~tp~~lr~~ 482 (975)
T COG5181 408 ASQHRGKELVSFL-KAMGFIIPLMSPEYACHDTREHMEI-VFREFK---SPDEEMKKDLLVVERICDKVGTDTPWKLRDQ 482 (975)
T ss_pred HHhcCCchHHHHH-HHhccccccCChHhhhhhHHHHHHH-HHHHhC---CchhhcchhHHHHHHHHhccCCCCHHHHHHh
Confidence 1111112332222 2223221 21 012211110 000000 00000000 00012344678777765
Q ss_pred ccccCCCCchhhhhhhhccChHHHHHHHHHHHHhh--hcCCCC-CCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 000275 279 VDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA--STKRIA-PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG 355 (1739)
Q Consensus 279 vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~--~~pKi~-~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~g 355 (1739)
|- | .|+ +++|.+|.+.=...++.. .+--++ .+.-.-+++-+-.-..|---.--.+++..+..+-..
T Consensus 483 v~-----p--efF----~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~ 551 (975)
T COG5181 483 VS-----P--EFF----SPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSR 551 (975)
T ss_pred hc-----H--Hhh----chHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHh
Confidence 53 3 454 678999887622222210 000000 011112333333334455544445555555555555
Q ss_pred hc-cccc-chhhhhHHHHHHHhccCCHHHHH------HHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHH-
Q 000275 356 LR-THFS-GSSRFLLPVLLEKLKEKKPTVAE------SLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW- 426 (1739)
Q Consensus 356 Lr-~~F~-~y~~~~lp~lLeklKEKK~~V~e------A~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~- 426 (1739)
|+ .+|. +-..-++-.++-.|-|.-.++-- ++..+++...+ -.+..++..|+..|+||.|.+|+..+..
T Consensus 552 lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~k---p~l~~ivStiL~~L~~k~p~vR~~aadl~ 628 (975)
T COG5181 552 LGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGK---PHLSMIVSTILKLLRSKPPDVRIRAADLM 628 (975)
T ss_pred cccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccC---cchHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 54 3454 33455666677777776554321 11223332222 2366788999999999999999976655
Q ss_pred --HHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChh----HHHHHhhcCCHHHHHHHHHHH
Q 000275 427 --VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR----PLERSIEKLDDVRRNKLSEMI 500 (1739)
Q Consensus 427 --l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~----~l~~~l~~Ld~~kk~KI~e~~ 500 (1739)
|+..++++... +.+.-+--+++..+..-.|+|--.-..|+-.|....|.+ +++..+..|-|+-|+|=+...
T Consensus 629 ~sl~~vlk~c~e~---~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~ 705 (975)
T COG5181 629 GSLAKVLKACGET---KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVV 705 (975)
T ss_pred HHHHHHHHhcchH---HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHh
Confidence 44455555432 233556678899999999999999889999999999988 566666667777666544432
Q ss_pred hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCC
Q 000275 501 AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEA 580 (1739)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~ 580 (1739)
...- . -+-. .....|.
T Consensus 706 ~nti------------~---------------lvg~-----I~~~~pe-------------------------------- 721 (975)
T COG5181 706 ANTI------------A---------------LVGT-----ICMNSPE-------------------------------- 721 (975)
T ss_pred hhHH------------H---------------HHHH-----HHhcCcc--------------------------------
Confidence 2100 0 0000 0000000
Q ss_pred CCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhh----------------------------
Q 000275 581 PEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV---------------------------- 632 (1739)
Q Consensus 581 ~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~~~~WK~Rl~a~e~l~~~v~~~---------------------------- 632 (1739)
-.+.-|-. -|-=+++..|.+.|=--|-+|.+.+-=.-+..
T Consensus 722 -------yi~~rEWM-----RIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI 789 (975)
T COG5181 722 -------YIGVREWM-----RICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAI 789 (975)
T ss_pred -------cCCHHHHH-----HHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhh
Confidence 00101100 01112333333333333444433332000000
Q ss_pred ---hccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccc--hhhhHHHHHHH
Q 000275 633 ---QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLT 707 (1739)
Q Consensus 633 ---~~~~~~~~~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~ 707 (1739)
.+.-.+-.+|--.++ .+.-.|..||+.+|..++.+.+.-+.-+...++.+.|-+-|-+.|. -.|..+..+++
T Consensus 790 ~iVae~cgpfsVlP~lm~---dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~ 866 (975)
T COG5181 790 SIVAEYCGPFSVLPTLMS---DYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIR 866 (975)
T ss_pred hhhHhhcCchhhHHHHHh---cccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHH
Confidence 000001112221221 3455788899999999999888777788999999999999999985 45778877777
Q ss_pred HHHHh---hchHhHHHHHHHhhhh---cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHH
Q 000275 708 TFSEA---VGPGFIFERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIK 781 (1739)
Q Consensus 708 ~~aE~---~~~~~V~~~l~~~~~~---~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~~~k~~~l~~sN~~VR~aAi~ 781 (1739)
-++=- ++-.=.+=+++..+.- .-.|-|+....+.|-.+-.- +...++..|+-. ||=|....||+.=-.
T Consensus 867 Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~-----lg~g~~m~Yv~q-GLFHPs~~VRk~ywt 940 (975)
T COG5181 867 HLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATV-----LGSGAMMKYVQQ-GLFHPSSTVRKRYWT 940 (975)
T ss_pred HHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHH-----hccHHHHHHHHH-hccCchHHHHHHHHH
Confidence 66543 3333333444444332 34688877665555444433 444588899887 699999999999999
Q ss_pred HHHHHHhhhCchhHhhh---hcchHHHHHHHH
Q 000275 782 LLGALHKFVGPDIKGFL---ADVKPALLSALD 810 (1739)
Q Consensus 782 Ll~~ly~~~G~~l~~~l---~dlkpall~~ie 810 (1739)
..-.||.+-.+++-+|+ +|.+|-+..+|+
T Consensus 941 vyn~myv~~~damvp~ypv~~d~n~e~~~~l~ 972 (975)
T COG5181 941 VYNIMYVFDSDAMVPCYPVEEDLNPELARTLH 972 (975)
T ss_pred HHhhhhhcccccccccccCCCCcCHHHHhhhh
Confidence 99999999999999888 677788777664
No 27
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0021 Score=79.51 Aligned_cols=392 Identities=17% Similarity=0.158 Sum_probs=221.1
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCc---cchHHHHhhhc---chhhHhHHHHHHHHHHHHHHhcCh
Q 000275 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT---GELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGP 928 (1739)
Q Consensus 855 t~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~---geL~~aLk~Rl---~DsNk~lv~~al~ii~~lA~amG~ 928 (1739)
+..+.+.++||-+--||.|--++++++.+ .+..|.+ -.++..|.+++ .++|.+= -.|-=+..++.|+|+
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~---l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rk--GgLiGlAA~~iaLg~ 76 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKD---LVNNNDYDQIRKVISELAGDYAYSPHANMRK--GGLIGLAAVAIALGI 76 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHH---HHccCcHHHHHHHHHHHHHHhccCccccccc--chHHHHHHHHHHhcc
Confidence 45677889999999999999999999974 4445543 34555677776 2455433 333334455667899
Q ss_pred hhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--hhhhhHHHHHHHh----cccCCcchHHHHHHHHHHHhc
Q 000275 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALT----DAKLGAEGRKDLFDWLSKQLT 1002 (1739)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~----~~~~~p~~r~e~l~wl~~~l~ 1002 (1739)
+-.+|...++|||+.||+|+--.||--|-++|.-++..+- .-.+++.|.++|- +.-.|..+=.|++.-|.+-..
T Consensus 77 ~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIV 156 (675)
T KOG0212|consen 77 KDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIV 156 (675)
T ss_pred ccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhc
Confidence 8888999999999999999999999999999999998874 3344667777774 222355667888888777665
Q ss_pred cCCCCcchhhhhhHHhh-hcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCC
Q 000275 1003 GLSGFPDAAHLLKPASI-AMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTS 1081 (1739)
Q Consensus 1003 ~~~~~~~~~~~~~p~~~-~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~ 1081 (1739)
......-..+-..|++. .+-+.++.+|..-=.=+-. +-.+..-.|..++..+-+.-..
T Consensus 157 te~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~-Lds~P~~~m~~yl~~~ldGLf~-------------------- 215 (675)
T KOG0212|consen 157 TESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYV-LDSVPDLEMISYLPSLLDGLFN-------------------- 215 (675)
T ss_pred cccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHH-HhcCCcHHHHhcchHHHHHHHH--------------------
Confidence 55543222344455444 7788899999643222211 1112222233333222111110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHHhhhhccccccCCChhHHH
Q 000275 1082 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQ 1161 (1739)
Q Consensus 1082 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve 1161 (1739)
...+++++.|.
T Consensus 216 ---------------------------------------------------~LsD~s~eVr~------------------ 226 (675)
T KOG0212|consen 216 ---------------------------------------------------MLSDSSDEVRT------------------ 226 (675)
T ss_pred ---------------------------------------------------HhcCCcHHHHH------------------
Confidence 01122222221
Q ss_pred HHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHH--hccCcchHHHHHHhhhhHHHH
Q 000275 1162 ELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVL--QFCKSNTTCLLKVLEFLPELF 1239 (1739)
Q Consensus 1162 ~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tl--r~~dtN~~vl~k~Le~l~~l~ 1239 (1739)
+ ...+++.=|+.-=-+.++-+.-.-++.+...+.+..+.+-. ..+.|+-- .++-++ ++.-.=.++..++
T Consensus 227 -~---~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~---~al~Wi~efV~i~g~~--~l~~~s~il~~iL 297 (675)
T KOG0212|consen 227 -L---TDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQL---KALTWIQEFVKIPGRD--LLLYLSGILTAIL 297 (675)
T ss_pred -H---HHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHH---HHHHHHHHHhcCCCcc--hhhhhhhhhhhcc
Confidence 1 11111111111001111111122233333333333222221 12556521 222221 1111111122222
Q ss_pred HHHHhcCCcccHhHHhhhhhHHHHhhCC-ChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHH
Q 000275 1240 DTLRDEGYSLTESEAAVFLPCLVEKSGH-NIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFL 1318 (1739)
Q Consensus 1240 ~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd-~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~l 1318 (1739)
.-+ ...-.|+-+|.+..+..++.|+=. .+..---.++.|+..+. .-+++-+--||++||+|+-.+
T Consensus 298 pc~-s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~-------------~~l~~~~~~tri~~L~Wi~~l 363 (675)
T KOG0212|consen 298 PCL-SDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLT-------------KYLSDDREETRIAVLNWIILL 363 (675)
T ss_pred cCC-CCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHH-------------HHhhcchHHHHHHHHHHHHHH
Confidence 222 233344667777777766666522 11110023444444433 345566778999999999999
Q ss_pred HHhhcCcc-cCccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhch
Q 000275 1319 IDHHGAEI-SGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGE 1364 (1739)
Q Consensus 1319 i~~~G~~v-~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd 1364 (1739)
..++|-.+ +-..--+...=+.++|++..|---+|..++.+-.-...
T Consensus 364 ~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 364 YHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 99999777 44445678999999999999999999999876444333
No 28
>PRK09687 putative lyase; Provisional
Probab=97.81 E-value=0.002 Score=76.64 Aligned_cols=244 Identities=15% Similarity=0.107 Sum_probs=139.4
Q ss_pred HHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhh------hCch
Q 000275 720 ERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF------VGPD 793 (1739)
Q Consensus 720 ~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~------~G~~ 793 (1739)
+.+++.+ .+.++.|+.+++..+ ..+|- ..+++.+..+ +.+.|+.||..|+..||.+-.. .-+.
T Consensus 26 ~~L~~~L-~d~d~~vR~~A~~aL----~~~~~-----~~~~~~l~~l-l~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~ 94 (280)
T PRK09687 26 DELFRLL-DDHNSLKRISSIRVL----QLRGG-----QDVFRLAIEL-CSSKNPIERDIGADILSQLGMAKRCQDNVFNI 94 (280)
T ss_pred HHHHHHH-hCCCHHHHHHHHHHH----HhcCc-----chHHHHHHHH-HhCCCHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 3444442 788999998877654 34453 3555666667 8899999999999999875310 0111
Q ss_pred hHhh-hhcchHHHH-HHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcccccccCcHHHHhhcCCCChHHHH
Q 000275 794 IKGF-LADVKPALL-SALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRL 871 (1739)
Q Consensus 794 l~~~-l~dlkpall-~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~Rk 871 (1739)
|... +.|.-+... +.+.+ ....... . ++-+..+.+.+..-+.|++|.+|.
T Consensus 95 L~~l~~~D~d~~VR~~A~~a-LG~~~~~-----------------------~----~~~~~~a~~~l~~~~~D~~~~VR~ 146 (280)
T PRK09687 95 LNNLALEDKSACVRASAINA-TGHRCKK-----------------------N----PLYSPKIVEQSQITAFDKSTNVRF 146 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHH-Hhccccc-----------------------c----cccchHHHHHHHHHhhCCCHHHHH
Confidence 2222 122111111 11111 1111000 0 000111233455567788888888
Q ss_pred HHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHhccCchh
Q 000275 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951 (1739)
Q Consensus 872 EaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~ 951 (1739)
.+...+..+= . .+.+.+|...|.|.|..|-..|+..+|.+ + -......+.++..|.|....
T Consensus 147 ~a~~aLg~~~----------~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~----~~~~~~~~~L~~~L~D~~~~ 207 (280)
T PRK09687 147 AVAFALSVIN----------D-EAAIPLLINLLKDPNGDVRNWAAFALNSN----K----YDNPDIREAFVAMLQDKNEE 207 (280)
T ss_pred HHHHHHhccC----------C-HHHHHHHHHHhcCCCHHHHHHHHHHHhcC----C----CCCHHHHHHHHHHhcCCChH
Confidence 8888874321 1 45677777788888887777766655555 1 11234567778888888888
Q ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcC-CCCHHHHH
Q 000275 952 MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMT-DKSSDVRK 1030 (1739)
Q Consensus 952 vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~~~~~~~~~~~p~~~~L~-Dr~~dVRk 1030 (1739)
||.+|+.+|..+ |-...+|.+...|.++. .|.++. +.|..+... ..+.++...++ +.++.||.
T Consensus 208 VR~~A~~aLg~~----~~~~av~~Li~~L~~~~----~~~~a~----~ALg~ig~~----~a~p~L~~l~~~~~d~~v~~ 271 (280)
T PRK09687 208 IRIEAIIGLALR----KDKRVLSVLIKELKKGT----VGDLII----EAAGELGDK----TLLPVLDTLLYKFDDNEIIT 271 (280)
T ss_pred HHHHHHHHHHcc----CChhHHHHHHHHHcCCc----hHHHHH----HHHHhcCCH----hHHHHHHHHHhhCCChhHHH
Confidence 888888887653 44567777777777542 344333 334444321 23344445553 66778888
Q ss_pred HHHHHHH
Q 000275 1031 AAEACIV 1037 (1739)
Q Consensus 1031 aA~~~L~ 1037 (1739)
.|-++|.
T Consensus 272 ~a~~a~~ 278 (280)
T PRK09687 272 KAIDKLK 278 (280)
T ss_pred HHHHHHh
Confidence 7776653
No 29
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.00011 Score=85.50 Aligned_cols=178 Identities=19% Similarity=0.229 Sum_probs=154.7
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhH
Q 000275 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1739)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~l 368 (1739)
-...|.|..|-...++|.-+-.|.. ++..-.....+++=++-+-+..-+-.|...|+.|++.|...+......-...++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999988765 565556678888888888888999999999999999999999999888999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCCh-hHHHHhhhhhH
Q 000275 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYV 447 (1739)
Q Consensus 369 p~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~-~~~~~~~k~~~ 447 (1739)
-.++-|-.+-|..||+.+..||.++..+ .+..-++..+..+++|.||.+|.-...-+.+|.....- +.....+...+
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 9999999999999999999999999986 88999999999999999999999888888888876531 22224456788
Q ss_pred HHHHhhhCCCCHHHHHHHHHHH
Q 000275 448 PICMECLNDGTPEVRDAAFSVL 469 (1739)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aa~~~l 469 (1739)
+.+-.-+.|+-|++|++|-..+
T Consensus 251 ~a~~~~~~d~Lp~~~~~a~~~~ 272 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAARFVR 272 (334)
T ss_pred HHHHhhhcccccccccchhHHH
Confidence 9999999999999999887443
No 30
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.79 E-value=0.0023 Score=78.04 Aligned_cols=366 Identities=18% Similarity=0.189 Sum_probs=232.3
Q ss_pred hhHHHHHHHHHHHhhchHhHHHHHHHhhhhc---CChhhHHHHHHHHHHHHHHhccCc--cchHhHHHHHhhhcCCCccH
Q 000275 699 RAHAMKCLTTFSEAVGPGFIFERLYKIMKDH---KNPKVLSEGILWMVSAVEDFGVSH--LKLKDLIDFCKDTGLQSSAA 773 (1739)
Q Consensus 699 r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~---KnPKv~~e~l~wl~~~i~eFG~~~--l~~K~li~~~k~~~l~~sN~ 773 (1739)
++.-....+++.++..+-|... +.+.|-++ -.||.+.-.+++++...+++-..+ .+.++.-.-.++. +.+..+
T Consensus 81 ~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~s~~t~~~~~s~rkm-~~~~~d 158 (516)
T KOG2956|consen 81 KKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGTSPNTKETKAAIRKM-FPWMFD 158 (516)
T ss_pred HhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCCCCCCCcchhhhhhc-cccccC
Confidence 4445556777888877777666 66665333 379999999999999998776432 3444443333332 222111
Q ss_pred H-----HHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCC-CCCCc--c--cc-ccccCc-----C--
Q 000275 774 A-----TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPK--K--TV-RASEST-----S-- 835 (1739)
Q Consensus 774 ~-----VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~-~p~p~--R--~~-r~~~~~-----~-- 835 (1739)
. +-...-+.++.+....-.+++..++++.|-...-.-+-.+.+..++ .|.|. + +. +..... +
T Consensus 159 ~~~~~l~~~~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a~~e~~~~~~n~~~~~~~~P~~ 238 (516)
T KOG2956|consen 159 PRIENLLTPHVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSAEKERFDSSNNKPSLPLSPPEE 238 (516)
T ss_pred chhhccccHHHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchhhhcccccccccccccCCChhh
Confidence 1 1112223444444444677888888888877666666555554332 22221 1 00 000000 0
Q ss_pred -CC--------------CCCC--------------CCCCCc--ccccccCcHHHHhhcCCC-ChHHHHHHHHHHHHHHHH
Q 000275 836 -SV--------------SSGG--------------SDGLPR--EDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEE 883 (1739)
Q Consensus 836 -~~--------------~~~~--------------~d~lpr--vDIs~kit~~l~~~l~d~-~WK~RkEaLe~v~~il~~ 883 (1739)
.. +.+. .|.+++ +|=+ .+..++++++.+. .=-.|++||.++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~~-~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e 317 (516)
T KOG2956|consen 239 EKPGLGSTKVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQS-ALVADLLKEISGSERASERKEALSELPKMLCE 317 (516)
T ss_pred cccCCCccccCccccccccchhhhhhchhhccCcchhhCCCCCcchh-HHHHHHHHhccCccchhHHHHHHHHHHHHHHc
Confidence 00 0000 011222 2222 2345677777665 888999999999999975
Q ss_pred cccCCCCCCccchHHHHhhhcch-hhHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHhccCch-hHHHHHHHHHH
Q 000275 884 ANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLD 961 (1739)
Q Consensus 884 ankrI~p~~~geL~~aLk~Rl~D-sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~-~vR~aa~~ald 961 (1739)
..--+=..-+++|+-.+=..|.| .+-+....||++|+.+.++=-..+.-++-..+.-+|++=.|..+ .+|.|+-.|+.
T Consensus 318 ~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~ 397 (516)
T KOG2956|consen 318 GSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLT 397 (516)
T ss_pred cchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 31001011167888888899988 88888999999999999999999999999999999999999655 66666667777
Q ss_pred HHHHhcchhhhhHHHHHHHhcccCCcchH-HHHHHHHHHHhccCCCC---cchhhhhhHHhhhcCCCCHHHHHHHHHHHH
Q 000275 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGR-KDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1739)
Q Consensus 962 a~~~~~gl~~~~~~i~~~L~~~~~~p~~r-~e~l~wl~~~l~~~~~~---~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1739)
......++..+. .|...+-+.- +-| .-++..+.+-+.....- ..+..+++.++..-+..+..|||.|==||.
T Consensus 398 ~las~~P~~~I~-~i~~~Ilt~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 398 TLASHLPLQCIV-NISPLILTAD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred HHHhhCchhHHH-HHhhHHhcCc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 776766765543 3344443211 012 23344566555555431 112223333777889999999999999999
Q ss_pred HHHHhcCHHHHHHHhhccCchhHHHHHHHHHhcc
Q 000275 1038 EILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (1739)
Q Consensus 1038 ~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~ 1071 (1739)
.++..+|.+.|.+++..|-.+.+..|+=+++.+.
T Consensus 474 amv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~ 507 (516)
T KOG2956|consen 474 AMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRAS 507 (516)
T ss_pred HHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhh
Confidence 9999999999999999999888888888887764
No 31
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.4 Score=62.16 Aligned_cols=649 Identities=17% Similarity=0.186 Sum_probs=329.5
Q ss_pred hhhhchhh---hcCCCCHH-HHHHHHHHHHHHHHHcChhhh-hhhHHHHHHHHHhhhc--CChhhHHHHHHHHHHHHhhc
Q 000275 52 ELGPLFKK---TVADSNAP-VQDKALDALIAYLKAADADAG-RYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE 124 (1739)
Q Consensus 52 ~~~~l~kk---~v~DsN~~-aqek~leal~~~l~~a~~~~~-~~~~~~~~~lveK~L~--~r~~tk~~a~e~~l~~vE~e 124 (1739)
.|++++.. .+.|.++. .-+..+||+-..++-.++..- ....+++.+||-=... +-...+=.|..+++.-.|..
T Consensus 126 ~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~ 205 (859)
T KOG1241|consen 126 QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFT 205 (859)
T ss_pred hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHH
Confidence 35566654 48888888 778889988766665554322 2244455555443322 12334445666666666653
Q ss_pred ch--------hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccC--hhHHHhhchhhhcccChhHHHHHHHHHHH
Q 000275 125 AV--------DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQDQNVRASSKGLTLE 194 (1739)
Q Consensus 125 ~~--------~~v~e~ll~~~~~K~PKvv~a~i~~l~~~l~~FG~k~v~--~K~ilk~l~~lf~~~dk~VR~ea~~L~ve 194 (1739)
+. ..+.+.+..++..---+|.++++.++..++.-|=-..-+ -+.++..--..|-+.|..|--.|+.+=..
T Consensus 206 ~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWst 285 (859)
T KOG1241|consen 206 KANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWST 285 (859)
T ss_pred HHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 31 234455556666666788888888888877755321110 11122222222335555555555444222
Q ss_pred HHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhh--hhhhcccCCCCCCCCCC----CCCCC-
Q 000275 195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKEL--GQELISEDVGPGPSEES----TADVP- 267 (1739)
Q Consensus 195 lyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~p~R~~Rs~q~~~~--~~~~~~~~~~~~~~~~~----~~~~~- 267 (1739)
++ +..-++ .-|+.+++++... |.-.+|.|+.-.--. -.+...- -+.+.++++ .+.+.
T Consensus 286 ic-------------eEEiD~-~~e~~e~~d~~~~-p~~~~fa~~a~~~v~P~Ll~~L~k-qde~~d~DdWnp~kAAg~C 349 (859)
T KOG1241|consen 286 IC-------------EEEIDL-AIEYGEAVDQGLP-PSSKYFARQALQDVVPVLLELLTK-QDEDDDDDDWNPAKAAGVC 349 (859)
T ss_pred HH-------------HHHHHH-HHHHHHHhhcCCC-chhhHHHHHHHhHhhHHHHHHHHh-CCCCcccccCcHHHHHHHH
Confidence 21 111111 1234444443221 122455554422000 0000000 000000000 00000
Q ss_pred ----CCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhcC---CCCCCChhHHHHHHHHHhccccHH
Q 000275 268 ----PEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIA 340 (1739)
Q Consensus 268 ----~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~p---Ki~~~dy~eL~~~Lkk~l~DsNv~ 340 (1739)
...=-.|++++| + +.+.+++.+++|..|-.|.=++--++.-| ++.+- -.+.+..+-..+.|+++.
T Consensus 350 L~l~A~~~~D~Iv~~V-----l--~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~i-V~qalp~ii~lm~D~sl~ 421 (859)
T KOG1241|consen 350 LMLFAQCVGDDIVPHV-----L--PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPI-VIQALPSIINLMSDPSLW 421 (859)
T ss_pred HHHHHHHhcccchhhh-----H--HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHH-HhhhhHHHHHHhcCchhh
Confidence 000012345544 2 34455999999999999988887665422 33321 234566666777799999
Q ss_pred HHHHHHHHHHHHHHHhccccc--chhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCch
Q 000275 341 VAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPL 418 (1739)
Q Consensus 341 vv~~A~~~l~~lA~gLr~~F~--~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~ 418 (1739)
|--.++-++|.+++.+..... -|...+++.+++-+.|- |.|....--|+- +| .|.+-++.-.. ++
T Consensus 422 VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~--------~L---aea~~eA~~s~-~q 488 (859)
T KOG1241|consen 422 VKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFI--------SL---AEAAYEAAVSN-GQ 488 (859)
T ss_pred hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHH--------HH---HHHHHHhccCC-CC
Confidence 999999999999999985433 35666677777777664 333332222221 22 22221111110 11
Q ss_pred hHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhC--C-CCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHH
Q 000275 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN--D-GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNK 495 (1739)
Q Consensus 419 vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~--D-s~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~Ld~~kk~K 495 (1739)
- ++..++...++..|++..+ | .+...|-+|+++|+++++..-. ...+.+.++-..-+.|
T Consensus 489 t-----------------~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~-~vy~~v~~~~l~il~k 550 (859)
T KOG1241|consen 489 T-----------------DPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD-DVYPMVQKLTLVILEK 550 (859)
T ss_pred C-----------------CccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHHHH
Confidence 1 0111223456666666654 3 5678999999999999998774 4666777777788888
Q ss_pred HHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 000275 496 LSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETS 575 (1739)
Q Consensus 496 I~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s 575 (1739)
+.+++++..- .-
T Consensus 551 l~q~i~~~~l----~~---------------------------------------------------------------- 562 (859)
T KOG1241|consen 551 LDQTISSQIL----SL---------------------------------------------------------------- 562 (859)
T ss_pred HHHHHHHHhc----cH----------------------------------------------------------------
Confidence 8888863100 00
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccc
Q 000275 576 KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEK 655 (1739)
Q Consensus 576 ~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~~~~WK~Rl~a~e~l~~~v~~~~~~~~~~~~Lvr~l~~~Pgwkes 655 (1739)
+......|++..+-..+. .++..+.+ .+ .+-.|.-...++|++.. +.|
T Consensus 563 ----------~dr~q~~eLQs~Lc~~Lq-~i~rk~~~----~~-------------~~~~d~iM~lflri~~s----~~s 610 (859)
T KOG1241|consen 563 ----------ADRAQLNELQSLLCNTLQ-SIIRKVGS----DI-------------REVSDQIMGLFLRIFES----KRS 610 (859)
T ss_pred ----------hhHHHHHHHHHHHHHHHH-HHHHHccc----cc-------------hhHHHHHHHHHHHHHcC----Ccc
Confidence 000012333332211110 01111111 00 11112223445555543 333
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhH
Q 000275 656 NVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735 (1739)
Q Consensus 656 NfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~ 735 (1739)
++ |...+|-.+..+++..++-+.+.+..+.|+ +..++.+.-.-.|-
T Consensus 611 ~~-v~e~a~laV~tl~~~Lg~~F~kym~~f~py---------------------------------L~~gL~n~~e~qVc 656 (859)
T KOG1241|consen 611 AV-VHEEAFLAVSTLAESLGKGFAKYMPAFKPY---------------------------------LLMGLSNFQEYQVC 656 (859)
T ss_pred cc-chHHHHHHHHHHHHHHhHhHHHHHHHHHHH---------------------------------HHHHhhcchHHHHH
Confidence 33 344444444444444332222222223222 22332222233344
Q ss_pred HHHHHHHHHHHHHhccCccch-HhHHHHHhhhcCCCccH--HHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHH
Q 000275 736 SEGILWMVSAVEDFGVSHLKL-KDLIDFCKDTGLQSSAA--ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1739)
Q Consensus 736 ~e~l~wl~~~i~eFG~~~l~~-K~li~~~k~~~l~~sN~--~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~E 812 (1739)
..+...++.+-+..+-..++. ..+...+-.+ |++.|- .|+-.-++++|.+-+-+|.....|++.+=|-+.+.=..+
T Consensus 657 ~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~-Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~ 735 (859)
T KOG1241|consen 657 AAAVGLVGDLARALEDDILPYCDELMTVLVQC-LSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQ 735 (859)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-ccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 444444444444445443333 2444445554 776664 478888899999999999999999987665543321110
Q ss_pred HhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHc-----ccC
Q 000275 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-----NKR 887 (1739)
Q Consensus 813 F~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~a-----nkr 887 (1739)
..+ +.+|. -+.+. +.|+..||....|+..= +..
T Consensus 736 -------~d~-----------------~~~~~-----------~dYvd-------~LRe~~leay~gi~qglk~~~~~~~ 773 (859)
T KOG1241|consen 736 -------TDP-----------------ADDSM-----------VDYVD-------ELREGILEAYTGIIQGLKTHADVML 773 (859)
T ss_pred -------CCC-----------------CcccH-----------HHHHH-------HHHHHHHHHHHHHHHHhhcccchhh
Confidence 000 00010 01222 46999999999999742 123
Q ss_pred CCCCCccchHHHHhhhc-chhh-HhHHHHHHHHHHHHHHhcChhhHhh
Q 000275 888 IQPAGTGELFGGLRGRL-YDSN-KNLVMATLITLGAVASAMGPAVEKS 933 (1739)
Q Consensus 888 I~p~~~geL~~aLk~Rl-~DsN-k~lv~~al~ii~~lA~amG~~~~k~ 933 (1739)
++|-. +-++.-+.+.= .+.| -.+...|+.+||.||...|++..+.
T Consensus 774 ~~p~v-~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~ 820 (859)
T KOG1241|consen 774 VQPYV-PHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKL 820 (859)
T ss_pred hhcch-HHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhh
Confidence 55543 45555554432 3444 7888999999999999999877654
No 32
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.24 Score=64.02 Aligned_cols=327 Identities=16% Similarity=0.216 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC-------------CCCccc
Q 000275 615 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-------------KFPKKC 681 (1739)
Q Consensus 615 WK~Rl~a~e~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~-------------~fs~~~ 681 (1739)
=-.|+.|.=.|+..+.+.++. ..-+..=||+... -|+-=||=..++..|..-.-+.+ ......
T Consensus 51 ~~~R~~AGL~LKN~L~akd~~-~k~~~~qRWl~l~---~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~ 126 (859)
T KOG1241|consen 51 DVARMAAGLQLKNSLTAKDPE-RKQQYQQRWLQLP---AEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQ 126 (859)
T ss_pred HHHHHHHhHHHhhhhccCCHH-HHHHHHHHHHcCC---HHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhh
Confidence 445888877888777664432 2345666777432 34444565555555541111111 222223
Q ss_pred hhhhccchhhccccch---hhhHHHHHHHHHHHhhchHhHHHHH-------HHhh-hhcCChhhHHHHHHHHHHHHHHhc
Q 000275 682 VVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFIFERL-------YKIM-KDHKNPKVLSEGILWMVSAVEDFG 750 (1739)
Q Consensus 682 ~~~~l~~lveKlgD~K---~r~~a~e~L~~~aE~~~~~~V~~~l-------~~~~-~~~KnPKv~~e~l~wl~~~i~eFG 750 (1739)
-..++.-++..+|+.- +|+.+.|++--+||...|+.+..+. ..|+ +.--+-.||-.+++.|-..++=-+
T Consensus 127 wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~ 206 (859)
T KOG1241|consen 127 WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK 206 (859)
T ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence 3346677888888853 6799999999999999999444432 2232 234467889999998888885333
Q ss_pred cC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHH--------HhhhCchh-----HhhhhcchHHHHHHH-----
Q 000275 751 VS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGAL--------HKFVGPDI-----KGFLADVKPALLSAL----- 809 (1739)
Q Consensus 751 ~~---~l~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~l--------y~~~G~~l-----~~~l~dlkpall~~i----- 809 (1739)
.. -.+.-.+...++++ -++.+..||.+|..+|+.+ -.|||++| ..+.++-...-++.|
T Consensus 207 ~nF~~E~ern~iMqvvcEa-tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWst 285 (859)
T KOG1241|consen 207 ANFNNEMERNYIMQVVCEA-TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWST 285 (859)
T ss_pred HhhccHhhhceeeeeeeec-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11 12344566667887 8999999999999999864 35677753 345555555555544
Q ss_pred --HHHHh------cCCCCCCC-CCccccccccCc-----------CCCCCCCCCC---------------CCcccccccC
Q 000275 810 --DAEYE------KNPFEGTV-VPKKTVRASEST-----------SSVSSGGSDG---------------LPREDISGKF 854 (1739)
Q Consensus 810 --e~EF~------K~~~~~~p-~p~R~~r~~~~~-----------~~~~~~~~d~---------------lprvDIs~ki 854 (1739)
|+|++ .....+-| .-.++.|+.-.. ++....+||= .=+-||..-+
T Consensus 286 iceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~V 365 (859)
T KOG1241|consen 286 ICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHV 365 (859)
T ss_pred HHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhh
Confidence 34444 22222222 223444431110 0000000000 1112333322
Q ss_pred cHHHHh-hcCCCChHHHHHHHHHHHHHHHH-cccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhH-
Q 000275 855 TPTLVK-SLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE- 931 (1739)
Q Consensus 855 t~~l~~-~l~d~~WK~RkEaLe~v~~il~~-ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~- 931 (1739)
= .|++ ++.++||+.|-.|.=+...|++. .-.+++|-. -+.++.+-.-+.|++..+..+|.-++|+|+..+-..+-
T Consensus 366 l-~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV-~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n 443 (859)
T KOG1241|consen 366 L-PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV-IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIIN 443 (859)
T ss_pred H-HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH-hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhccc
Confidence 2 4777 69999999999999999999974 235677754 67777777788899999999999999999998874432
Q ss_pred -hhhhhhhHHHHHHhccC
Q 000275 932 -KSSKGVLSDILKCLGDN 948 (1739)
Q Consensus 932 -k~~k~l~~~il~~l~D~ 948 (1739)
.|....++..++.|.|.
T Consensus 444 ~~~l~~~l~~l~~gL~De 461 (859)
T KOG1241|consen 444 QELLQSKLSALLEGLNDE 461 (859)
T ss_pred HhhhhHHHHHHHHHhhhC
Confidence 34455555556666654
No 33
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.56 E-value=0.023 Score=75.18 Aligned_cols=383 Identities=20% Similarity=0.201 Sum_probs=248.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh--
Q 000275 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-- 402 (1739)
Q Consensus 325 eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~-- 402 (1739)
++.........|.+.+|=..+++=++.+|+++.+ ..-...++|....-..|-..+||+++.+++..+..+ +.-+
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l--~~~~~d 312 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDL--LDDDDD 312 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHh--cCCchh
Confidence 4455556666799999999999999999999998 334667788888888999999999999999999997 3333
Q ss_pred ---hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChh
Q 000275 403 ---DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1739)
Q Consensus 403 ---~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~ 479 (1739)
.+.+.+..+.+.+...+|.-+..|+...-...++... --...++....+.|...++|-+.+.=...+-..+.+.
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~---~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSAT---RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccC---cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence 3456667778888899998888777666554333111 1235788889999999999988776555554444422
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCC
Q 000275 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (1739)
Q Consensus 480 ~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~ 559 (1739)
.+ .+--+..-.-.+++.+.... . -++...++...+..|..+
T Consensus 390 ~~---~~i~~~~ilp~~~~lv~d~~---------------------~------~vr~a~a~~~~~~~p~~~--------- 430 (759)
T KOG0211|consen 390 CY---PNIPDSSILPEVQVLVLDNA---------------------L------HVRSALASVITGLSPILP--------- 430 (759)
T ss_pred cc---cccchhhhhHHHHHHHhccc---------------------c------hHHHHHhccccccCccCC---------
Confidence 11 11111111223444443210 0 000000000011111100
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHH--HHHhhhccch
Q 000275 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ--QVEAVQNLDQ 637 (1739)
Q Consensus 560 ~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~~~~WK~Rl~a~e~l~~--~v~~~~~~~~ 637 (1739)
+ ++....+-+-.+.++.+-.=..|++.++-+.. .+......+.
T Consensus 431 -----------k------------------------~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~ 475 (759)
T KOG0211|consen 431 -----------K------------------------ERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST 475 (759)
T ss_pred -----------c------------------------CcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence 0 00001222334455555556667777754432 2222223334
Q ss_pred hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC-CC-CccchhhhccchhhccccchhhhHHHHHHHHHHHhhch
Q 000275 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KF-PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGP 715 (1739)
Q Consensus 638 ~~~~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~-~f-s~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~ 715 (1739)
..+.++..+...-+|. |-.|..+.++.+..++...+ .| -.....+|..++.+++-. .|+.+...|..++|.+|.
T Consensus 476 ~s~slLp~i~el~~d~--~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~--Ir~~aa~~l~~l~~~~G~ 551 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDL--LWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYS--IREAAARNLPALVETFGS 551 (759)
T ss_pred hhhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHH--HHHHHHHHhHHHHHHhCc
Confidence 4566666655433344 88999999999999887654 33 344556677776665544 467788899999999998
Q ss_pred HhHHHHHHHhh---hhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCc
Q 000275 716 GFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (1739)
Q Consensus 716 ~~V~~~l~~~~---~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~ 792 (1739)
+|-...+.... ..+.|-++|.-++.-+..+..-||-. +--+.++.++... ..+++|+||-.+.+.|-.+-.++-+
T Consensus 552 ~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e-i~~~~Llp~~~~l-~~D~vanVR~nvak~L~~i~~~L~~ 629 (759)
T KOG0211|consen 552 EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE-ITCEDLLPVFLDL-VKDPVANVRINVAKHLPKILKLLDE 629 (759)
T ss_pred chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH-HHHHHHhHHHHHh-ccCCchhhhhhHHHHHHHHHhhcch
Confidence 88766554422 34667899999999999888888864 7789999999997 9999999999999988776666655
Q ss_pred hh
Q 000275 793 DI 794 (1739)
Q Consensus 793 ~l 794 (1739)
+.
T Consensus 630 ~~ 631 (759)
T KOG0211|consen 630 SV 631 (759)
T ss_pred HH
Confidence 43
No 34
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=1 Score=61.14 Aligned_cols=649 Identities=15% Similarity=0.163 Sum_probs=371.6
Q ss_pred hcCC-CCCCChhHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhccc-cc-chhhhhHHHHHHHhccCCHHHHHHHHH
Q 000275 314 STKR-IAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTH-FS-GSSRFLLPVLLEKLKEKKPTVAESLTQ 388 (1739)
Q Consensus 314 ~~pK-i~~~dy~eL~~~Lkk~l~--DsNv~vv~~A~~~l~~lA~gLr~~-F~-~y~~~~lp~lLeklKEKK~~V~eA~~~ 388 (1739)
.+|+ +-..-|++..+.|..++. .+|-.|.-.++.|++.|-.+-.-. +. .-.+..+-.++.=.-.+||.||.+++.
T Consensus 81 ~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~ 160 (1176)
T KOG1248|consen 81 YVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQR 160 (1176)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 4666 334458999999999998 999999999999999998874422 33 226778888999999999999999999
Q ss_pred HHHHHHHhcCCChhh-------hHHHHHHHhhcCC-chhHHHHHHHHH---HHHhhCChhHHHHhhhhhHHHHHhhhCCC
Q 000275 389 TLQAMHKAGCLNLVD-------VVEDVKTSVKNKV-PLVRSLTLNWVT---FCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1739)
Q Consensus 389 aLda~~~~~~~~l~~-------~~e~i~~al~~Kn-P~vk~et~~~l~---r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1739)
++-++....|+-++. +....+.-++.+- +.--..++++|. ..+.+.|.. +++.++..|+.++.-+
T Consensus 161 ~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~----li~sl~e~lL~i~~~s 236 (1176)
T KOG1248|consen 161 GIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRP----LIKSLCEVLLNITTES 236 (1176)
T ss_pred HHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHH----HHHHHHHHHHhhcccc
Confidence 999998743333322 1222333333222 444455555543 222233333 3589999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhh
Q 000275 458 TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS 537 (1739)
Q Consensus 458 ~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (1739)
+..|+-.+++|+..+.+---. .|+...-.++-.++-..+ |+. ..+-. ...=
T Consensus 237 ~v~v~~~~~q~l~~lf~~~~~--------~l~a~~~a~lL~al~~l~-------ps~---------~D~~~-----t~~W 287 (1176)
T KOG1248|consen 237 PVLVLLEVLQCLHSLFKKHPT--------ALAAELNARLLTALMTLS-------PSE---------NDDLL-----TVAW 287 (1176)
T ss_pred hHHHHHHHHHHHHHHHhcCCC--------cchHHHHHHHHHHHHHhC-------CCc---------cchHH-----HHHH
Confidence 999999999999887754332 334333344444332211 000 00000 0000
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHH
Q 000275 538 AASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKE 617 (1739)
Q Consensus 538 ~~~~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~~~~WK~ 617 (1739)
...+.. +... =..+..|-+...+-.+++ -+.+ +..+.-++
T Consensus 288 ~~v~~~---------------------------------~~~~-----la~~q~~~~~~~~~~~~~-~~~t-~~~s~~~e 327 (1176)
T KOG1248|consen 288 LKVLNE---------------------------------AHDI-----LATLQEEKALQALPRLFS-LFFT-ILESLIEE 327 (1176)
T ss_pred HHHHHH---------------------------------HHHH-----HHHhCHHHHHHhhhhhhh-HHHH-HHhcccHH
Confidence 000000 0000 001122223333323332 2344 77777888
Q ss_pred HHHHHHHHHHHHHhhhcc--chhHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccc
Q 000275 618 RLEAISSLRQQVEAVQNL--DQSVEI-LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 694 (1739)
Q Consensus 618 Rl~a~e~l~~~v~~~~~~--~~~~~~-Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlg 694 (1739)
++++.......|-..... +.-|.- +-.++..+ | --|...+|+|+..+.++++..+....--++.++++.=+
T Consensus 328 ~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~k--f----~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~ 401 (1176)
T KOG1248|consen 328 LVQAASQSLKEILKESVTVIDALCSKQLHSLLDYK--F----HAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRA 401 (1176)
T ss_pred HHHHHHHHHHHHhcccCcccHHHHHHHHHHHHcch--H----HHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhc
Confidence 888776655444332111 112222 22233221 1 13666788888888888777777777778888887433
Q ss_pred c--chhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHh----HHHHHhhhcC
Q 000275 695 D--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD----LIDFCKDTGL 768 (1739)
Q Consensus 695 D--~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~----li~~~k~~~l 768 (1739)
+ .=.+....++.-+..-+.||+-|+.-+ +. +. ++-..+..=.||--.|+++-. +-++-- ++..+++ +
T Consensus 402 ~~d~~~~~~ld~~IGSAV~AmGPe~vL~~l-pL--nl-~~~s~~~~RsWLLPvLR~~i~-~A~La~F~~~ivpla~s--l 474 (1176)
T KOG1248|consen 402 SPDFFHKLQLDQCIGSAVRAMGPERVLTIL-PL--NL-HAESLSFTRSWLLPVLRDYII-GASLAFFTEYIVPLAMS--L 474 (1176)
T ss_pred CCCCccHHHHHHHHHHHHHhhCHHHHHHHc-ch--hc-cccccccchhHhHHHHHHhhc-cCcHHHHHHHHHHHHHH--H
Confidence 3 345667788888888899998877654 22 22 667777888899999988754 234432 3333332 2
Q ss_pred CCccHHHHHHHHHHHHHHHhhhCchhHhh--------------hhcchHHHHHHHHH--------------HHhcCC---
Q 000275 769 QSSAAATRNATIKLLGALHKFVGPDIKGF--------------LADVKPALLSALDA--------------EYEKNP--- 817 (1739)
Q Consensus 769 ~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~--------------l~dlkpall~~ie~--------------EF~K~~--- 817 (1739)
.+.-+.+..+....- +|.-++..||.. |.|+=|.+...|.. -.+.+.
T Consensus 475 ~~K~~~l~~~~~~~~--~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~ 552 (1176)
T KOG1248|consen 475 QLKAKKLKEAGSQVS--LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRPELRETICNSLRMLVEQNKPSS 552 (1176)
T ss_pred HHHHHhhhhccCcHH--HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcc
Confidence 222222333222221 444444433332 23333333333322 222220
Q ss_pred -----------------------CCCCCCCcccccc-----------------ccCc--------CCCCCCCCCCCCccc
Q 000275 818 -----------------------FEGTVVPKKTVRA-----------------SEST--------SSVSSGGSDGLPRED 849 (1739)
Q Consensus 818 -----------------------~~~~p~p~R~~r~-----------------~~~~--------~~~~~~~~d~lprvD 849 (1739)
+.++++..|..-. ..+. +..+++.+ .-
T Consensus 553 ~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~-----~s 627 (1176)
T KOG1248|consen 553 DAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLD-----ES 627 (1176)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccch-----hh
Confidence 1112222211000 0000 00000000 11
Q ss_pred ccccCcH----------------------HHHhhcCCC-ChHHHHHHHHHHHHHHHH-cccCCCCCCccchHHHHhhhcc
Q 000275 850 ISGKFTP----------------------TLVKSLESP-DWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLY 905 (1739)
Q Consensus 850 Is~kit~----------------------~l~~~l~d~-~WK~RkEaLe~v~~il~~-ankrI~p~~~geL~~aLk~Rl~ 905 (1739)
++++++- ++....+.+ +=+++|-+.+=++.++.- ..........-++...|..-+.
T Consensus 628 ~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~q 707 (1176)
T KOG1248|consen 628 VASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQ 707 (1176)
T ss_pred hhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHh
Confidence 1111111 122333333 677788888777777752 0000111112567788888888
Q ss_pred hhhHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHH--h---cc-------hhhhh
Q 000275 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA--A---VH-------LDKMV 973 (1739)
Q Consensus 906 DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~--~---~g-------l~~~~ 973 (1739)
++-.-...-.+.|+..|-...+..+....--++|-++-.++|-...-|+-+-+||-.++. . -| +.+|+
T Consensus 708 s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl 787 (1176)
T KOG1248|consen 708 SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFL 787 (1176)
T ss_pred ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 888888899999999999999988888777788888878899999999999999988872 1 23 34455
Q ss_pred HHHHHHHhcccCCcchHHH-HHHH--HHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000275 974 PYVTTALTDAKLGAEGRKD-LFDW--LSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (1739)
Q Consensus 974 ~~i~~~L~~~~~~p~~r~e-~l~w--l~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~ 1050 (1739)
..|...|.+.. +..+.- ++.+ +...+.++-+...+..++.-+..+|..++++||++|=..+-.++..+.+..+.+
T Consensus 788 ~~Isagl~gd~--~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~ 865 (1176)
T KOG1248|consen 788 SIISAGLVGDS--TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP 865 (1176)
T ss_pred HHHHhhhcccH--HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 55666655332 333444 3322 222222333333355566678889999999999999999999999999988888
Q ss_pred HhhccCc
Q 000275 1051 NLKDIQG 1057 (1739)
Q Consensus 1051 ~~~~Lk~ 1057 (1739)
+...|=|
T Consensus 866 ~~~~LL~ 872 (1176)
T KOG1248|consen 866 HLEELLP 872 (1176)
T ss_pred hHHHHHH
Confidence 7755543
No 35
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.45 E-value=0.09 Score=65.94 Aligned_cols=177 Identities=21% Similarity=0.235 Sum_probs=126.6
Q ss_pred ccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHH---HHhhhcchhhHhHHHHHHHHHHHHHH
Q 000275 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG---GLRGRLYDSNKNLVMATLITLGAVAS 924 (1739)
Q Consensus 848 vDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~---aLk~Rl~DsNk~lv~~al~ii~~lA~ 924 (1739)
-+|.+.|||- +.++-=|+--.++.=|..|+..+.-.|.+. |-++ .|-.-|+--||-+-..|-+..|.|+.
T Consensus 687 ~~ilP~ltPI----Lrnkh~Kv~~nti~lvg~I~~~~peyi~~r---EWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 687 SGILPSLTPI----LRNKHQKVVANTIALVGTICMNSPEYIGVR---EWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred hhccccccHh----hhhhhHHHhhhHHHHHHHHHhcCcccCCHH---HHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 3556667764 445667777788888888887554444332 3222 34445567899999999999999999
Q ss_pred hcChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000275 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1739)
Q Consensus 925 amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~ 1004 (1739)
|.||. -++-.++..|+-+.-+.|.+..-++...++.||.=.++|.+..-...|. .+....+|.=+.=.|.-+
T Consensus 760 aiGPq------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe--~nVQnGvLkam~fmFeyi 831 (975)
T COG5181 760 AIGPQ------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPE--ANVQNGVLKAMCFMFEYI 831 (975)
T ss_pred hcCHH------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCch--hHHHHhHHHHHHHHHHHH
Confidence 99974 3566778888888889999999999999999999889996655555453 335566655444333322
Q ss_pred CC-CcchhhhhhHHhh-hcCCCCHHHHHHHHHHHHHH
Q 000275 1005 SG-FPDAAHLLKPASI-AMTDKSSDVRKAAEACIVEI 1039 (1739)
Q Consensus 1005 ~~-~~~~~~~~~p~~~-~L~Dr~~dVRkaA~~~L~~~ 1039 (1739)
.. ..+....+.|++. .|+||++--|.-|..++-.+
T Consensus 832 g~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 832 GQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred HHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 22 3467777888554 99999999999888776544
No 36
>PRK09687 putative lyase; Provisional
Probab=97.39 E-value=0.0018 Score=77.14 Aligned_cols=160 Identities=17% Similarity=0.127 Sum_probs=120.7
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhh
Q 000275 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1739)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~ 367 (1739)
+.+.+.+.+.....|.+++..|..+- ..+++..+.+.+.|.|..+-..|+.+++.|...=+. ..-.
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~---------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a 91 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRG---------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNV 91 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC---------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHH
Confidence 46788899999999999999987653 245677777788899999999999999997531110 2345
Q ss_pred HHHHHHH-hccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhh
Q 000275 368 LPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1739)
Q Consensus 368 lp~lLek-lKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~ 446 (1739)
++.+..- ++|+=+.||.++..+|--+...........++.+..++.+++|.||..+..=|. .... ...
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg----~~~~-------~~a 160 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALS----VIND-------EAA 160 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHh----ccCC-------HHH
Confidence 6666655 689999999988888876643322234456777778889999999976655443 2222 235
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000275 447 VPICMECLNDGTPEVRDAAFSVLAAI 472 (1739)
Q Consensus 447 ~~~l~k~l~Ds~~~VR~aa~~~l~~l 472 (1739)
++.++.+++|.+++||..|..+||.+
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 78999999999999999999999988
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=97.35 E-value=0.12 Score=69.21 Aligned_cols=176 Identities=13% Similarity=0.096 Sum_probs=128.0
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhhh
Q 000275 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1739)
Q Consensus 855 t~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1739)
...|.+.+.|+|=-+|-=||..+-.|.. |..+..+...+++.+.|.|.-|-..|+-|+..+-.--. ... ..
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~-------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv-~~ 177 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRV-------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLF-YQ 177 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-ccc-cc
Confidence 4568889999999999999999865543 33456788999999999999999999999988854322 111 12
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--hhhhhHHHHHHHhc-ccCCcchHHHHHHHHHHHhccCCCCcchh
Q 000275 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTD-AKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011 (1739)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~-~~~~p~~r~e~l~wl~~~l~~~~~~~~~~ 1011 (1739)
..+.+.+.+.|.|+.+.|...|+.+|..+.+..+ ++...+.+...+.. +..|++++..+|+.|.++-+.. ..+..
T Consensus 178 ~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~--~~e~~ 255 (746)
T PTZ00429 178 QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD--KESAE 255 (746)
T ss_pred cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC--cHHHH
Confidence 3467778888999999999999999999987654 22223333333321 2347899999999998754322 23455
Q ss_pred hhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000275 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1739)
Q Consensus 1012 ~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1739)
.++.-+..+|..+|+.|-=+|-.++-.+..
T Consensus 256 ~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 256 TLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 666677888899999888877777655543
No 38
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.14 E-value=0.023 Score=68.74 Aligned_cols=189 Identities=16% Similarity=0.116 Sum_probs=132.0
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCC---CCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc--ccccch
Q 000275 289 GFWEGVKATKWSERKDAVAELTKLASTKRI---APGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGS 363 (1739)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi---~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr--~~F~~y 363 (1739)
++.+.+.+|+=+.|.++|+.+..++...-+ ..+.+..|+..+.+.|.=..-.=..+|+++++.++--|| ..-...
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 678888999999999999999887643322 236689999999999973333667899999999999988 333444
Q ss_pred hhhhHHHHHHHhccCCH--HHHHHHHHHHHHHHHhcCCChhhh------HHHHHHH--hh--cC--------CchhHHHH
Q 000275 364 SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKAGCLNLVDV------VEDVKTS--VK--NK--------VPLVRSLT 423 (1739)
Q Consensus 364 ~~~~lp~lLeklKEKK~--~V~eA~~~aLda~~~~~~~~l~~~------~e~i~~a--l~--~K--------nP~vk~et 423 (1739)
...+.|.|..-++|.-. .+|.++..||-.+.-.+|...+++ ++.|... .+ .+ +|.+...+
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 66777777777777643 456667667765544444444433 3322211 11 11 24555544
Q ss_pred HHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000275 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1739)
Q Consensus 424 ~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~G 477 (1739)
+.=-.-.+...+...+...+...+|.++.+|+-++.+||-||.++|+-|.-...
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 443344555566555566677889999999999999999999999999987766
No 39
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.86 E-value=0.0071 Score=60.67 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHH
Q 000275 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLT 423 (1739)
Q Consensus 344 ~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et 423 (1739)
-++-++..+|-||++....|...++|++|..|.|.-..||-++-++|-.+... + |.+.
T Consensus 5 ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~-~---------------------~~~~ 62 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV-A---------------------RGEI 62 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-H---------------------HHHH
Confidence 35678899999999999999999999999999999999999998888888764 1 1111
Q ss_pred HHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000275 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1739)
Q Consensus 424 ~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k 474 (1739)
+. ....+...+.+.+.|+++.||.+| +.|..++|
T Consensus 63 l~----------------~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 63 LP----------------YFNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HH----------------HHHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 11 124556778899999999999998 45555543
No 40
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.75 E-value=0.01 Score=59.51 Aligned_cols=54 Identities=30% Similarity=0.413 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000275 915 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1739)
Q Consensus 915 al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1739)
++-.++.+|.|+|+.+.+|...++|+|+.+|.|+-.-||-+|-++|--+...++
T Consensus 6 gli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~ 59 (97)
T PF12755_consen 6 GLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR 59 (97)
T ss_pred HHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999998877765
No 41
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=7 Score=53.67 Aligned_cols=628 Identities=17% Similarity=0.181 Sum_probs=324.5
Q ss_pred CCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHH---------HHHH
Q 000275 318 IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE---------SLTQ 388 (1739)
Q Consensus 318 i~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~e---------A~~~ 388 (1739)
...+..-.++..|-.+.+-+++.|...+++|+..|-++.-.. -.-.+..-+|..+-+-+|+..+ ++.+
T Consensus 217 ~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~---l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~ 293 (1176)
T KOG1248|consen 217 FPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTA---LAAELNARLLTALMTLSPSENDDLLTVAWLKVLNE 293 (1176)
T ss_pred CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHH
Confidence 334678889999999999999999999999999998887652 1223333445555555555443 2223
Q ss_pred HHHHHHHhcC-CC---hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHH
Q 000275 389 TLQAMHKAGC-LN---LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDA 464 (1739)
Q Consensus 389 aLda~~~~~~-~~---l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~a 464 (1739)
+.+.++...- .. +..+..-+.+.+..-++++=+++.+-+.+.++.+.. ... ..+-..+-..|+=+...|-+-
T Consensus 294 ~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~---~~c~~~~~~~l~~kf~~~~~~ 369 (1176)
T KOG1248|consen 294 AHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VID---ALCSKQLHSLLDYKFHAVWRF 369 (1176)
T ss_pred HHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccH---HHHHHHHHHHHcchHHHHHHH
Confidence 3333322100 00 122334455667788888888888888888876654 111 122335777888888888888
Q ss_pred HHHHHHHHHHHhChh---HHHHHhhcCCHHH-------HHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhh
Q 000275 465 AFSVLAAIAKSVGMR---PLERSIEKLDDVR-------RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFV 534 (1739)
Q Consensus 465 a~~~l~~l~k~~Ge~---~l~~~l~~Ld~~k-------k~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1739)
.+..+..+.--+|+. .|.+.|+.|+..+ +..|.+++..+- .+-+ |+
T Consensus 370 ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV------------~AmG-----Pe------- 425 (1176)
T KOG1248|consen 370 ILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAV------------RAMG-----PE------- 425 (1176)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHH------------HhhC-----HH-------
Confidence 888888888888863 3666666666533 334555543310 0000 00
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhcc
Q 000275 535 RKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV 614 (1739)
Q Consensus 535 ~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~~~~ 614 (1739)
.... ..|-. +....++ +-..+++--|++--
T Consensus 426 -----~vL~------~lpLn-----------------------------l~~~s~~----------~~RsWLLPvLR~~i 455 (1176)
T KOG1248|consen 426 -----RVLT------ILPLN-----------------------------LHAESLS----------FTRSWLLPVLRDYI 455 (1176)
T ss_pred -----HHHH------Hcchh-----------------------------ccccccc----------cchhHhHHHHHHhh
Confidence 0000 00000 0000000 00111111111111
Q ss_pred -------HHHHHHH-HHHHHHHHHhhhccch---hHH-HHHHHHHhcCCCccchHHHHH---HHHHHHHHHHHhcCCCCc
Q 000275 615 -------WKERLEA-ISSLRQQVEAVQNLDQ---SVE-ILVRLVCMLPGWSEKNVQVQQ---QVIEVINYLAATATKFPK 679 (1739)
Q Consensus 615 -------WK~Rl~a-~e~l~~~v~~~~~~~~---~~~-~Lvr~l~~~PgwkesNfqV~~---~~leil~~la~~~~~fs~ 679 (1739)
|.+..-. .+.+......+...+. ..| +..++|.-.|||++.-.-+.. -.+-++....... .+.+
T Consensus 456 ~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~-~elr 534 (1176)
T KOG1248|consen 456 IGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR-PELR 534 (1176)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc-hHhH
Confidence 1111111 1122222222221111 112 234566778999875443333 2333344333332 3556
Q ss_pred cchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHH-HHhccCccchHh
Q 000275 680 KCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAV-EDFGVSHLKLKD 758 (1739)
Q Consensus 680 ~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~i-~eFG~~~l~~K~ 758 (1739)
..+...+.-+++..-.++--....+.++.+|--.- -++=.+|......-+ ++..-+..||-.+. ..|-...=++-.
T Consensus 535 ~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL--~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv~~ 611 (1176)
T KOG1248|consen 535 ETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFL--PRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDVVG 611 (1176)
T ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHH--HHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 66666666666665322222233334444433221 122233333211112 55555666666665 445443323222
Q ss_pred HH-HHHhhhcCCCcc-HHH----HHHHHHHHHHHHhhhCchhHhhhhcchHH-HHHHHHHHHhcCCCCCCCCCccccccc
Q 000275 759 LI-DFCKDTGLQSSA-AAT----RNATIKLLGALHKFVGPDIKGFLADVKPA-LLSALDAEYEKNPFEGTVVPKKTVRAS 831 (1739)
Q Consensus 759 li-~~~k~~~l~~sN-~~V----R~aAi~Ll~~ly~~~G~~l~~~l~dlkpa-ll~~ie~EF~K~~~~~~p~p~R~~r~~ 831 (1739)
.+ +-+-. +.+.+ -+| +-+-+.++..+-.+. ++.+. .+-+++.+|++....+ .+.|.-|-=
T Consensus 612 ~l~~s~~e--~as~~~~s~~~~~~~slLdl~~~~a~~~---------~e~~vs~l~~v~~~~e~~~~~~--vQkK~yrlL 678 (1176)
T KOG1248|consen 612 SLKDSAGE--LASDLDESVASFKTLSLLDLLIALAPVQ---------TESQVSKLFTVDPEFENSSSTK--VQKKAYRLL 678 (1176)
T ss_pred HHHHHHHh--HhccchhhhhhHHHHHHHHHHHhhhccc---------cchhHHHHHHhhHHhhccccHH--HHHHHHHHH
Confidence 22 22221 22222 222 223333333333322 22211 2227888888874311 122221110
Q ss_pred cC-cCCCCCCCCCCCCcccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHH-HHhh---hcch
Q 000275 832 ES-TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRG---RLYD 906 (1739)
Q Consensus 832 ~~-~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~-aLk~---Rl~D 906 (1739)
.+ .+..++.+ +-.+-..-|-..+.+.+.+..-=.|++.|..+..|+...+ +..-+++. .+.. -++|
T Consensus 679 ~~l~~~~s~~~----~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-----~e~~~~i~k~I~EvIL~~Ke 749 (1176)
T KOG1248|consen 679 EELSSSPSGEG----LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-----AEHCDLIPKLIPEVILSLKE 749 (1176)
T ss_pred HHHhcCCchhh----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHhccc
Confidence 00 00011100 0000111123345566777888889999999999997542 11122222 2222 2288
Q ss_pred hhHhHHHHHHHHHHHHHH---hcChhhHh---hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-c------hhhhh
Q 000275 907 SNKNLVMATLITLGAVAS---AMGPAVEK---SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-H------LDKMV 973 (1739)
Q Consensus 907 sNk~lv~~al~ii~~lA~---amG~~~~k---~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-g------l~~~~ 973 (1739)
-|..--+.|..||-.|.. ..-.+-++ -..-+++-|-..|......++.+-+-++..++-.- + +..++
T Consensus 750 ~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li 829 (1176)
T KOG1248|consen 750 VNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLI 829 (1176)
T ss_pred ccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 898888888888877762 22222112 12223333334455666777777577777665432 1 34556
Q ss_pred HHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC---cchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000275 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (1739)
Q Consensus 974 ~~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~~~---~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~ 1050 (1739)
+++.-+|.+. +++.+..+.+|+......++.. +....++.-++.-+.|.+..+|++.-.+|..+++..|++.+..
T Consensus 830 ~~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~ 907 (1176)
T KOG1248|consen 830 SMVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELES 907 (1176)
T ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHh
Confidence 6777777754 6999999999999888777752 2223334446667788899999999999999999999999998
Q ss_pred Hhhc
Q 000275 1051 NLKD 1054 (1739)
Q Consensus 1051 ~~~~ 1054 (1739)
.+..
T Consensus 908 ~~pe 911 (1176)
T KOG1248|consen 908 FLPE 911 (1176)
T ss_pred hCHH
Confidence 8763
No 42
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.022 Score=66.91 Aligned_cols=178 Identities=17% Similarity=0.243 Sum_probs=136.1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhhhhh
Q 000275 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1739)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1739)
..+++|+|++|-.--+||--+..+.. =++.+--+.+-+++-++-+-++.-+..|...|.-+++.|.++.+..+......
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~-fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSE-FHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999986664 23444444467888888889999999999999999999999999999999999
Q ss_pred hhHHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcch----hh
Q 000275 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA----AH 1012 (1739)
Q Consensus 937 l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~~~~~~----~~ 1012 (1739)
++-.++..=++.|..||++|..+|++++.++.-..+++.+..++.+. ||..|.-...-..++...+...+-. ..
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~--n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHS--NPRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhh--chhhhhhhhccccccceeccccchhhHhHHH
Confidence 99999999999999999999999999999999999999999999865 3443433222222222222111111 12
Q ss_pred hhhHHhhhcCCCCHHHHHHHHHHHH
Q 000275 1013 LLKPASIAMTDKSSDVRKAAEACIV 1037 (1739)
Q Consensus 1013 ~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1739)
++..+-..+-|+-+++|++|.-++.
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~ 273 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRL 273 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHH
Confidence 2223445778999999998886654
No 43
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.31 E-value=0.005 Score=48.55 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=27.1
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000275 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1739)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~ 475 (1739)
++|.++++++|++++||.+|..+|+.|.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
No 44
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.26 E-value=1.4 Score=57.11 Aligned_cols=101 Identities=21% Similarity=0.299 Sum_probs=79.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhcCCChh----hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh--h
Q 000275 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH--K 444 (1739)
Q Consensus 371 lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~----~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~--k 444 (1739)
+++.|.+.+...++.+..+|+.++.. ..+. ++.+.+..+|.|.+|.||.-++.=|.|+..+... ....+ .
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~--~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~--~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSA--LSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG--AAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH--HHHHhcCc
Confidence 77777777777778888888888875 4444 4456677899999999999999999999875432 11222 4
Q ss_pred hhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000275 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1739)
Q Consensus 445 ~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~ 475 (1739)
.+++.++.|+.|.+.+|.+.|..+|..+.++
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC
Confidence 6899999999999999999999999888765
No 45
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=95.97 E-value=0.021 Score=61.15 Aligned_cols=113 Identities=30% Similarity=0.507 Sum_probs=84.4
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhh--hhhh
Q 000275 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1739)
Q Consensus 860 ~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l 937 (1739)
..+.+.||-.=. .|++..|.. +..-.|.+++|++||...|.+++..||.++..+..=.|+.|... .+-|
T Consensus 16 ~~~~~~Dw~~~l-------~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~f 86 (140)
T PF00790_consen 16 ESLPSPDWSLIL-------EICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEF 86 (140)
T ss_dssp TTSSS--HHHHH-------HHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHH
T ss_pred cCCCCCCHHHHH-------HHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHH
Confidence 345677885333 333332233 44448999999999999999999999999999999999999765 4557
Q ss_pred hHHHHHHhccCchh----HHHHHHHHHHHHHHhcchhhhhHHHHHHHh
Q 000275 938 LSDILKCLGDNKKH----MRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1739)
Q Consensus 938 ~~~il~~l~D~K~~----vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1739)
+..+...+.+++.. ||+-+++.+..|....+-++-++.|.+...
T Consensus 87 l~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~ 134 (140)
T PF00790_consen 87 LDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYK 134 (140)
T ss_dssp HHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHH
T ss_pred HHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHH
Confidence 77777777765554 899999999999999976666666655544
No 46
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=11 Score=53.18 Aligned_cols=248 Identities=19% Similarity=0.287 Sum_probs=165.9
Q ss_pred HHHHhhhhcCChhhHHHHHHHHHHHHHHhccC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhh
Q 000275 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGF 797 (1739)
Q Consensus 721 ~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~---~l~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~ 797 (1739)
..+......-||-.|...+.||-+.+.-.|-. .+..+.+..---. +|+..|-=+...|-.=+|-+|-.-|.+++.-
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~-~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~ 899 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSH-LLSDNDEFSQDVASRGLGLVYELGDSSLKKS 899 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHH-HhcccHHHHHHHHhcCceEEEecCCchhHHH
Confidence 33344456779999999999999999999932 3445555533333 4999999999999999999998777666543
Q ss_pred hhcchHHHHHHHHHHHhcCCCCCCCCCccccccccC-cCCCCCCCC-----CCCC-cccccccCcHHHH-hhc----CCC
Q 000275 798 LADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES-TSSVSSGGS-----DGLP-REDISGKFTPTLV-KSL----ESP 865 (1739)
Q Consensus 798 l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~-~~~~~~~~~-----d~lp-rvDIs~kit~~l~-~~l----~d~ 865 (1739)
| =..|+.++-. .|-....-..-|.-. +.. -+..++||. |+.- .-|+ + -|+++ +=| ...
T Consensus 900 L---V~sL~~tl~~--Gkr~~~~vs~eTelF--q~G~Lg~Tp~Gg~isTYKELc~LASdl-~--qPdLVYKFM~LAnh~A 969 (1702)
T KOG0915|consen 900 L---VDSLVNTLTG--GKRKAIKVSEETELF--QEGTLGKTPDGGKISTYKELCNLASDL-G--QPDLVYKFMQLANHNA 969 (1702)
T ss_pred H---HHHHHHHHhc--cccccceeccchhcc--cCCcCCCCCCCCcchHHHHHHHHHhhc-C--ChHHHHHHHHHhhhhc
Confidence 3 2244444433 111100000000000 000 011111110 0000 0000 1 13343 323 334
Q ss_pred ChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHh
Q 000275 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (1739)
Q Consensus 866 ~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l 945 (1739)
-|.-|+=|-=-+.+|..+|.-.++|.. +.|++-|-.==-|-+++|...-..|-..|-+--..-++.|..-++-.+|-.|
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~l 1048 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNL 1048 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhc
Confidence 599999999999999999988899986 8888877443479999999988888888888777788999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Q 000275 946 GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1739)
Q Consensus 946 ~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1739)
+++-=-||+|+--||.-....=..+.+.+.|.+..
T Consensus 1049 t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw 1083 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFDQVKEKLPELW 1083 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 99999999999999998888777777766554443
No 47
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.89 E-value=0.014 Score=51.88 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000275 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1739)
Q Consensus 417 P~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l 472 (1739)
|.||..++.-|.+... .......+++..++|.++.+|+|++++||.+|+.+||.|
T Consensus 1 p~vR~~A~~aLg~l~~-~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAE-GCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTT-TTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhc-ccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6788888888877333 333444566788999999999999999999999999864
No 48
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.84 E-value=0.066 Score=57.67 Aligned_cols=110 Identities=19% Similarity=0.344 Sum_probs=85.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhh--hhhhhH
Q 000275 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1739)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1739)
+...||-.=.|=-|.| |. ++++.-|.+++|++||...|.+++..||.++..++.=.|+.|-.. .+-|+.
T Consensus 13 l~~~dw~~il~icD~I-------~~--~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWGLILDVCDKV-------KS--DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHHHHHHHHHHH-------hc--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 4557895444433333 22 244447999999999999999999999999999999999999865 677888
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Q 000275 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1739)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1739)
.+...+.+ .-..|++-++..+..|.....-+.=+..|.+..
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y 125 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDLY 125 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 88888888 678999999999999998886554444444433
No 49
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.72 E-value=0.065 Score=59.67 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCH
Q 000275 380 PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459 (1739)
Q Consensus 380 ~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~ 459 (1739)
+.||.-+.-++.-++.....-++..++.+...|.+++|.||..++.-|++.+.+.- .+.-..++..++.++.|+++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHHHcCCCH
Confidence 46676666666655544233356688899999999999999999999999987531 12213345778899999999
Q ss_pred HHHHHHHHHHHHHHHHhChhHH
Q 000275 460 EVRDAAFSVLAAIAKSVGMRPL 481 (1739)
Q Consensus 460 ~VR~aa~~~l~~l~k~~Ge~~l 481 (1739)
+||+.|..+|..+.+.-+...+
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHH
Confidence 9999999999999988554444
No 50
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.71 E-value=0.082 Score=53.39 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=84.0
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc---CCC-hh-hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000275 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---CLN-LV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1739)
Q Consensus 365 ~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~---~~~-l~-~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~ 439 (1739)
..+++.+++.+++....++..+..+|-.++... +.. +. ++++.+...|.+.+|.++..++..|.+.....+. ..
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~ 84 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED-NK 84 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH-HH
Confidence 347899999999999999999999988887530 000 22 5678888999999999999999888888765432 22
Q ss_pred HHhhh-hhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000275 440 LKVHK-DYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1739)
Q Consensus 440 ~~~~k-~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~ 473 (1739)
..+.+ .+++.+.+.+++.+.++|+.+..+|..+.
T Consensus 85 ~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22333 48999999999999999999999998763
No 51
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.68 E-value=0.03 Score=54.12 Aligned_cols=86 Identities=19% Similarity=0.346 Sum_probs=68.0
Q ss_pred hhHHHHhh-CCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHH
Q 000275 1258 LPCLVEKS-GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIV 1336 (1739)
Q Consensus 1258 lP~Lv~K~-Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~i 1336 (1739)
||.|+..+ .|+...+|.. .++.+..+. ..++.++|.+.++++|+.+|..++.-||.+ | ..++++.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~---a~~~L~~~~-~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~-----~~~~~~~L 67 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAE---AARALGELG-DPEAIPALIELLKDEDPMVRRAAARALGRI----G-----DPEAIPAL 67 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHH---HHHHHHCCT-HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H-----HHHTHHHH
T ss_pred CHHHHHHHhcCCCHHHHHH---HHHHHHHcC-CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C-----CHHHHHHH
Confidence 68889888 8888888865 455555443 458999999999999999999999999975 3 35677777
Q ss_pred HHHhcc-CChhHHHHHHHHHH
Q 000275 1337 ASLTAE-RDGEIRKAALNTLA 1356 (1739)
Q Consensus 1337 a~~i~d-rD~~VR~AALn~l~ 1356 (1739)
.+++.+ .|..||.+|+.+|+
T Consensus 68 ~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 68 IKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHhhcC
Confidence 776654 67778999999886
No 52
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.67 E-value=0.23 Score=61.03 Aligned_cols=298 Identities=17% Similarity=0.158 Sum_probs=158.7
Q ss_pred cCcCChhHHHHHHHHHHHHhhhcCCCCchhhhh----------hhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhh
Q 000275 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRE----------LGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 89 (1739)
Q Consensus 20 l~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~----------~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~ 89 (1739)
..|-.=|+|..|.--+....+++..-.-.-|+. -+.++-=.+.|.|+-...-+++.+.+++..+.. +-.
T Consensus 5 ~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~-fls 83 (728)
T KOG4535|consen 5 MRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQ-FLS 83 (728)
T ss_pred hhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHH-HHH
Confidence 345556899999888877776542211011110 022333358999999999999988877765422 111
Q ss_pred hhHHHHHHHHHhhhcC----ChhhHHHHHHHHHHHHhhcchhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccC
Q 000275 90 YAKEVCDAIAAKCLTG----RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP 165 (1739)
Q Consensus 90 ~~~~~~~~lveK~L~~----r~~tk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K~PKvv~a~i~~l~~~l~~FG~k~v~ 165 (1739)
.+.+ +-.-.|+- -+-..--+..|+++..|.| -.|-++..||.++..++.+--...+.
T Consensus 84 ~a~~----~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e---------------~~~~~~tq~~kcla~lv~~~p~~~l~ 144 (728)
T KOG4535|consen 84 VAED----TSDHAFTPFSVMIACSIRELHRCLLLALVAE---------------SSSQTVTQIIKCLANLVSNAPYDRLK 144 (728)
T ss_pred HHhc----cCCcCCCchHHHHHHHHHHHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHhcCchHHHH
Confidence 1000 00001110 0000112344555544443 34777888888888888765443332
Q ss_pred ---hhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHH-
Q 000275 166 ---PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ- 241 (1739)
Q Consensus 166 ---~K~ilk~l~~lf~~~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~p~R~~Rs~q- 241 (1739)
+-.+.-.++++..|+|++||-.+..+.+.|- |-..+ +..+|. -| +.+...|.....-
T Consensus 145 ~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v---~t~~~-------~pei~~-~~--------~~~~s~~n~~~~h~ 205 (728)
T KOG4535|consen 145 LSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV---STHAP-------LPEVQL-LL--------QQPCSSSNSATPHL 205 (728)
T ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH---hcCCC-------CHHHHH-Hh--------cCCCccccccCCCC
Confidence 2345678899999999999999888765543 31111 111221 11 1111111110000
Q ss_pred ---hHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhh------hhhcc--ChHHHHHHHHHHH
Q 000275 242 ---DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWE------GVKAT--KWSERKDAVAELT 310 (1739)
Q Consensus 242 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~------~l~s~--KWkeRkEaLe~l~ 310 (1739)
+-=.+. . +|+...+-..+++.+...|--++.++--.+-+|+.|=|. .+++. -=--|.|+++-|.
T Consensus 206 s~~~~~~~l---~--~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~ 280 (728)
T KOG4535|consen 206 SPPDWWKKL---P--AGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLT 280 (728)
T ss_pred CChHHHHhc---C--CCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHH
Confidence 000000 0 011111111112222233444555554444444433322 11110 1236889988887
Q ss_pred HhhhcCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccc
Q 000275 311 KLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361 (1739)
Q Consensus 311 ~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~ 361 (1739)
.+...--+..+-+.+|.|.+.+.+.|.--.+-.-+++|+..+..+++....
T Consensus 281 ~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~ 331 (728)
T KOG4535|consen 281 LLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYK 331 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcC
Confidence 776555555566789999999999999999999999999999999984433
No 53
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.67 E-value=8.5 Score=50.06 Aligned_cols=389 Identities=15% Similarity=0.159 Sum_probs=225.2
Q ss_pred cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHH
Q 000275 729 HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSA 808 (1739)
Q Consensus 729 ~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ 808 (1739)
..++.....++..|..++..+-...+ ...+.+++.. ||.|.||.||.-+.+.++-+-..-...+..
T Consensus 49 ~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~-gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~------------ 114 (503)
T PF10508_consen 49 TSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQR-GLTHPSPKVRRLALKQLGRIARHSEGAAQL------------ 114 (503)
T ss_pred hcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHHHHHH------------
Confidence 33778888888888888887766555 5677778887 499999999999988754433211000000
Q ss_pred HHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCC
Q 000275 809 LDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRI 888 (1739)
Q Consensus 809 ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI 888 (1739)
+. ...+-+.++.-+.|++=.+-++|...+..|... +..
T Consensus 115 ------------------------------------~~----~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~ 152 (503)
T PF10508_consen 115 ------------------------------------LV----DNELLPLIIQCLRDPDLSVAKAAIKALKKLASH--PEG 152 (503)
T ss_pred ------------------------------------hc----CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC--chh
Confidence 00 011234567778999999999999999999842 211
Q ss_pred CCCC-ccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhh-hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHh
Q 000275 889 QPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1739)
Q Consensus 889 ~p~~-~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~-~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~ 966 (1739)
-... -+++...|+.-+..+|-.+...++.++..++..--..++.. -.++++.++..|.+.-..|+-.+++.+...+..
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 1111 12337778887766677777778888777765544334332 236999999999999999999999999988875
Q ss_pred c-chhhh-----hHHHHHHHhcccCCc-c------hHHHHHHHHHHHhccCCC--CcchhhhhhHHhhhcCCCCHHHHHH
Q 000275 967 V-HLDKM-----VPYVTTALTDAKLGA-E------GRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTDKSSDVRKA 1031 (1739)
Q Consensus 967 ~-gl~~~-----~~~i~~~L~~~~~~p-~------~r~e~l~wl~~~l~~~~~--~~~~~~~~~p~~~~L~Dr~~dVRka 1031 (1739)
- |+.-+ ++-+...+.+...+| . ++-..++-++.. .+. ......++.-++.+++..+.+.|-.
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~ 309 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---SPQEVLELYPAFLERLFSMLESQDPTIREV 309 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Confidence 4 33222 233555555444455 1 222222222211 110 0112334444666778999999999
Q ss_pred HHHHHHHHHHhc-CHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCC
Q 000275 1032 AEACIVEILRAG-GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPT 1110 (1739)
Q Consensus 1032 A~~~L~~~m~~~-G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1110 (1739)
|-+.+|.+-... |...+. .+-.+.-+..+..+.+..+.
T Consensus 310 A~dtlg~igst~~G~~~L~---~~~~~~~~~~l~~~~~~~~~-------------------------------------- 348 (503)
T PF10508_consen 310 AFDTLGQIGSTVEGKQLLL---QKQGPAMKHVLKAIGDAIKS-------------------------------------- 348 (503)
T ss_pred HHHHHHHHhCCHHHHHHHH---hhcchHHHHHHHHHHHHhcC--------------------------------------
Confidence 999998775433 444441 11111222222222221110
Q ss_pred CCCCCCccccchhhhhhhhhhcccCCCChHHHHh-hhhcc-c--cccCCChhHHHHHHHHHHHhhhHH----HHHhhccc
Q 000275 1111 KGARPESIMSVQDFAVQSQALLNVKDSNKEDRER-MVVRR-F--KFEDPRIEQIQELENDMMKYFRED----LHRRLLST 1182 (1739)
Q Consensus 1111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~-~~~~k-w--~f~~pr~e~ve~L~~q~~~~~~~~----l~~~lf~~ 1182 (1739)
++ -+-|.+ +..+. | ..+++..+++-.+...+...++.. ++-.+.+.
T Consensus 349 -~~-------------------------~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q 402 (503)
T PF10508_consen 349 -GS-------------------------TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ 402 (503)
T ss_pred -Cc-------------------------hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 00 000000 00000 0 011122334433334444333322 34445567
Q ss_pred CHHH-HHHHHHHHHHhcCCC-hhhhhHhHHHHHHHHHHhccCcchHHHHHHhhhhHHHHHHHH
Q 000275 1183 DFKK-QVDGLEMLQKALPSI-RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243 (1739)
Q Consensus 1183 d~k~-~l~al~~l~~~l~~~-~~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~ 1243 (1739)
.|-+ |++|+..|....... .-..+.+.-=++.|++=|-.|+|..+.....++++.+.....
T Consensus 403 PF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 403 PFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 7766 899999888766543 111233344467788778899999999999999987665544
No 54
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=95.63 E-value=0.074 Score=56.53 Aligned_cols=111 Identities=23% Similarity=0.382 Sum_probs=83.5
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhh--hhhhh
Q 000275 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1739)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1739)
.+.+.||-.=.|=.|.| |.. +.+-.|.+++|++||...|.+++..||.++..+..=.|++|... .+-|+
T Consensus 12 ~l~~~dw~~~l~icD~i-------~~~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl 82 (133)
T smart00288 12 SLLEEDWELILEICDLI-------NST--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFL 82 (133)
T ss_pred CCCCcCHHHHHHHHHHH-------hCC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHH
Confidence 34567886544333333 333 44447999999999999999999999999999999999999765 55688
Q ss_pred HHHHHHhccCch--hHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Q 000275 939 SDILKCLGDNKK--HMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1739)
Q Consensus 939 ~~il~~l~D~K~--~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1739)
..+...+.+... .||+-++..+..|.....-++=++.+.+..
T Consensus 83 ~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y 126 (133)
T smart00288 83 NELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQIVDVY 126 (133)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchHHHHHH
Confidence 877777776544 299999999999999886555555555544
No 55
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.62 E-value=0.076 Score=51.29 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=68.2
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhh
Q 000275 368 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1739)
Q Consensus 368 lp~lLekl-KEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~ 446 (1739)
+|.+++.+ +|+-+.||..+..+|- . ..-.+.++.+...+++++|.||.++...|.+. +. ...
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~---~---~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~-------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG---E---LGDPEAIPALIELLKDEDPMVRRAAARALGRI----GD-------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH---C---CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HH-------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH---H---cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC-------HHH
Confidence 57899999 9999999987666665 2 34567889999999999999999999888853 11 346
Q ss_pred HHHHHhhhCC-CCHHHHHHHHHHHH
Q 000275 447 VPICMECLND-GTPEVRDAAFSVLA 470 (1739)
Q Consensus 447 ~~~l~k~l~D-s~~~VR~aa~~~l~ 470 (1739)
++.+.+.+.| .+..||.+|..+||
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7888887755 56778999999986
No 56
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.57 E-value=10 Score=48.27 Aligned_cols=151 Identities=14% Similarity=0.110 Sum_probs=105.7
Q ss_pred cccHHHHHHHHHHHHHHHHHhcccccch--hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHH----
Q 000275 336 DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVK---- 409 (1739)
Q Consensus 336 DsNv~vv~~A~~~l~~lA~gLr~~F~~y--~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~---- 409 (1739)
..-..|-..|++|+-.=.--.+.+|..- ...++....|..--.-..+..|+-.||.-++.-.+..+.-.+|-.+
T Consensus 189 et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt 268 (858)
T COG5215 189 ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALT 268 (858)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667777666555556777632 5566777888888888999999999999887643455555666443
Q ss_pred -HHhhcCCchhHHHHHHHHHHHHhh----------CChhHHH------HhhhhhHHHHHhhhCCC-------CHHHHHHH
Q 000275 410 -TSVKNKVPLVRSLTLNWVTFCIET----------SSKAAVL------KVHKDYVPICMECLNDG-------TPEVRDAA 465 (1739)
Q Consensus 410 -~al~~KnP~vk~et~~~l~r~l~~----------~~~~~~~------~~~k~~~~~l~k~l~Ds-------~~~VR~aa 465 (1739)
.+|++.|-+|+.++..|-....+. .|..+.. ..+++++|.++++|+.. +=.+-.+|
T Consensus 269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA 348 (858)
T COG5215 269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA 348 (858)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence 467899999999999988544432 1110100 12467899999988432 22467899
Q ss_pred HHHHHHHHHHhChhHHHHHhh
Q 000275 466 FSVLAAIAKSVGMRPLERSIE 486 (1739)
Q Consensus 466 ~~~l~~l~k~~Ge~~l~~~l~ 486 (1739)
..||--+....|...|++.++
T Consensus 349 ~sCLqlfaq~~gd~i~~pVl~ 369 (858)
T COG5215 349 SSCLQLFAQLKGDKIMRPVLG 369 (858)
T ss_pred HHHHHHHHHHhhhHhHHHHHH
Confidence 999999999999988888654
No 57
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.42 E-value=1.9 Score=52.65 Aligned_cols=261 Identities=20% Similarity=0.186 Sum_probs=167.7
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHH-hhhCchhHh
Q 000275 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH-KFVGPDIKG 796 (1739)
Q Consensus 718 V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly-~~~G~~l~~ 796 (1739)
.+..+++. ..++++-++..+... +.+ +..+..+.-+.+. +.+.++.||..|+..||.+- ....+.+..
T Consensus 44 ~~~~~~~~-l~~~~~~vr~~aa~~----l~~-----~~~~~av~~l~~~-l~d~~~~vr~~a~~aLg~~~~~~a~~~li~ 112 (335)
T COG1413 44 AADELLKL-LEDEDLLVRLSAAVA----LGE-----LGSEEAVPLLREL-LSDEDPRVRDAAADALGELGDPEAVPPLVE 112 (335)
T ss_pred hHHHHHHH-HcCCCHHHHHHHHHH----Hhh-----hchHHHHHHHHHH-hcCCCHHHHHHHHHHHHccCChhHHHHHHH
Confidence 44555555 345566666655544 223 3344666666676 88889999999988776654 334455555
Q ss_pred hhh-cchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCcccccccCcHHHHhhc------------C
Q 000275 797 FLA-DVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL------------E 863 (1739)
Q Consensus 797 ~l~-dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l------------~ 863 (1739)
+++ |.+.-.....-.-+.++..+.. + ..++..+ .
T Consensus 113 ~l~~d~~~~vR~~aa~aL~~~~~~~a--------------------------------~-~~l~~~l~~~~~~~a~~~~~ 159 (335)
T COG1413 113 LLENDENEGVRAAAARALGKLGDERA--------------------------------L-DPLLEALQDEDSGSAAAALD 159 (335)
T ss_pred HHHcCCcHhHHHHHHHHHHhcCchhh--------------------------------h-HHHHHHhccchhhhhhhhcc
Confidence 554 4444444444444444322110 0 0122222 3
Q ss_pred CCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHH
Q 000275 864 SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 943 (1739)
Q Consensus 864 d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~ 943 (1739)
+..|.+|..+++.+..+-. .+.+..|+..+.|.+..+...|..-++.+...+ ..+.+.+..
T Consensus 160 ~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~ 220 (335)
T COG1413 160 AALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVK 220 (335)
T ss_pred chHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHH
Confidence 3458899999988876553 567788889999999977777777776666555 566788899
Q ss_pred HhccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCC
Q 000275 944 CLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTD 1023 (1739)
Q Consensus 944 ~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~~~~~~~~~~~p~~~~L~D 1023 (1739)
.++|....+|.++..++... |...-.+.+...+.+. ++..+.....|+. .........++..-+.|
T Consensus 221 ~~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~ 286 (335)
T COG1413 221 ALSDESLEVRKAALLALGEI----GDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLID 286 (335)
T ss_pred HhcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhhc
Confidence 99999999999999888665 5555566677777743 3455666555554 11233445567778899
Q ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000275 1024 KSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1739)
Q Consensus 1024 r~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1739)
.+..+|..+...++.+-..............-
T Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~ 318 (335)
T COG1413 287 EANAVRLEAALALGQIGQEKAVAALLLALEDG 318 (335)
T ss_pred chhhHHHHHHHHHHhhcccchHHHHHHHhcCC
Confidence 99999999998888776666665555554443
No 58
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=95.35 E-value=0.077 Score=56.36 Aligned_cols=108 Identities=23% Similarity=0.405 Sum_probs=82.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhh--hhhhhH
Q 000275 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1739)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1739)
+.+.||..=.|=-|.|+ .. +.+-.|.+++|++||...|.+++..||.++..+..=.|++|... .+-++.
T Consensus 13 ~~~~D~~~il~icd~I~-------~~--~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWALNLELCDLIN-------LK--PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHHHHHHHHHHHh-------CC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 45688975444444332 11 44458999999999999999999999999999999999999764 336777
Q ss_pred HHHHHhccC---chhHHHHHHHHHHHHHHhcchh-hhhHHHHH
Q 000275 940 DILKCLGDN---KKHMRECTLTVLDAWLAAVHLD-KMVPYVTT 978 (1739)
Q Consensus 940 ~il~~l~D~---K~~vR~aa~~alda~~~~~gl~-~~~~~i~~ 978 (1739)
.++..+..+ ...||.-+++.+..|....+-+ .-++.+.+
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~~~~~~~~~~ 126 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGGHSEDLPGIED 126 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCccchHHHH
Confidence 788777764 5689999999999999988754 33444433
No 59
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.32 E-value=0.033 Score=56.25 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=83.3
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCc-cchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhhh
Q 000275 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1739)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~-geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1739)
+.+++-+.+.+|..|..|+..+..+.... +....... .+.++.|..-|.|.|..++..|+.+++.|+..-......+.
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 45778889999999999999999998521 11111111 25677888888899999999999999999986544444444
Q ss_pred -hhhhHHHHHHhccCchhHHHHHHHHHHHHH
Q 000275 935 -KGVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (1739)
Q Consensus 935 -k~l~~~il~~l~D~K~~vR~aa~~alda~~ 964 (1739)
..+++.+++.+.+....+|..+..++...+
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 458999999999999999999999887653
No 60
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=95.25 E-value=0.1 Score=56.19 Aligned_cols=111 Identities=20% Similarity=0.339 Sum_probs=85.9
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhh--hhhhh
Q 000275 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1739)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1739)
.+.+.||-.=.|=.|.|. + . +.+-.|.+++|++||...|.+++..||.++..+..-+|..|-.. .+-|+
T Consensus 16 ~l~~~dw~~ileicD~In-----~-~---~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl 86 (142)
T cd03569 16 LLGEPDLASILEICDMIR-----S-K---DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFM 86 (142)
T ss_pred ccCccCHHHHHHHHHHHh-----C-C---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHH
Confidence 346778976555555443 1 1 23337999999999999999999999999999999999999764 66788
Q ss_pred HHHHHHhcc-CchhHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Q 000275 939 SDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1739)
Q Consensus 939 ~~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1739)
..+...+.+ ....|++-++..+..|....+-++=++.|.++.
T Consensus 87 ~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y 129 (142)
T cd03569 87 DELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQLKYVVDTY 129 (142)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 888887764 455799999999999999887665555555444
No 61
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=0.64 Score=57.99 Aligned_cols=210 Identities=15% Similarity=0.111 Sum_probs=150.2
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCC-CChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhh
Q 000275 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1739)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~-~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~ 367 (1739)
.|-+.+.+.+|++|.-..--+-.+...+.+.+ |..++++-.|.....|.|-.+-..|+.|++..|.|+......|...+
T Consensus 221 q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ 300 (533)
T KOG2032|consen 221 QLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ 300 (533)
T ss_pred hcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH
Confidence 34456788999999987777767665555554 78999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHHHHHHHhcCCChh-------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCCh---
Q 000275 368 LPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLV-------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK--- 436 (1739)
Q Consensus 368 lp~lLeklKEKK-~~V~eA~~~aLda~~~~~~~~l~-------~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~--- 436 (1739)
+-.|+--+=|-- ..|.--+..||..+... .+.. ++...+.+..++-++++|...+..+.-...-..+
T Consensus 301 ldaii~gL~D~~~~~V~leam~~Lt~v~~~--~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e 378 (533)
T KOG2032|consen 301 LDAIIRGLYDDLNEEVQLEAMKCLTMVLEK--ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWE 378 (533)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHh--hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCch
Confidence 999888876643 23333334566555443 2222 3334556788899999998887766655433221
Q ss_pred hHHHHhhh-hhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHh
Q 000275 437 AAVLKVHK-DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1739)
Q Consensus 437 ~~~~~~~k-~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~Ld~~kk~KI~e~~~ 501 (1739)
..+...++ .+ ..++-.++|++|.|-.|+...+-+..--++-+.+..+..+.-+..+..+.++++
T Consensus 379 ~~Fte~v~k~~-~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn 443 (533)
T KOG2032|consen 379 EFFTEQVKKRL-APLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYN 443 (533)
T ss_pred hhhHHHHHhcc-ccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHH
Confidence 12211222 32 345667899999999998888888877788777777776443555557777765
No 62
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.76 E-value=1.5 Score=55.44 Aligned_cols=187 Identities=16% Similarity=0.203 Sum_probs=146.1
Q ss_pred hccChHHHHHHHHHHHHhhhcCCCCCC-ChhHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHH
Q 000275 295 KATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (1739)
Q Consensus 295 ~s~KWkeRkEaLe~l~~l~~~pKi~~~-dy~eL~~~Lkk~l-~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lL 372 (1739)
....+-.|.-+++-+-.++ +|..++ ...+++..+...+ .+.+...-..++.++.-++|||=-+=.+.+..++..++
T Consensus 200 ~~~~~~~~~~~~~~la~Lv--NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLV--NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred cCCChHHHHHHHHHHHHHH--cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4455889998888766554 346554 4777888777777 57888888899999999999996555788999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHh-c-CCC---------------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC
Q 000275 373 EKLKEKKPTVAESLTQTLQAMHKA-G-CLN---------------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1739)
Q Consensus 373 eklKEKK~~V~eA~~~aLda~~~~-~-~~~---------------l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~ 435 (1739)
+-|.+ +.+...+..++..++.- . +.+ +..++..+.+..+..+...|..-+.=|.-.+++.|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 99999 66777788888877653 0 001 34566677777777777788888888998999999
Q ss_pred hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhh
Q 000275 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (1739)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~ 486 (1739)
+..+...+..++|.++.+|+=.+++||.++.++|-.++.-- ...+..+++
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~ 405 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLS 405 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHH
Confidence 98888888999999999999999999999999888887765 444555554
No 63
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=0.34 Score=60.32 Aligned_cols=193 Identities=17% Similarity=0.179 Sum_probs=136.6
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcccCCCC-CCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhhhhh
Q 000275 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1739)
Q Consensus 858 l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p-~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1739)
+.....+..|+.|--..--+-++..+ +.+.- ..+|+++..|..|..|.|-.+...|+.+++..|++|-.++.+|...
T Consensus 222 ~~ss~ts~~~~~ritd~Af~ael~~~--~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~ 299 (533)
T KOG2032|consen 222 LLSSITSEKENGRITDIAFFAELKRP--KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT 299 (533)
T ss_pred cccccchhcccchHHHHHHHHHHhCc--ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH
Confidence 34456778999999888888888852 34442 3369999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhccC-chhHHHHHHHHHHHHHHhcchhhhhHH---HHHHHh--cccCCcchHHHHHHHHHHHhccCCCC---
Q 000275 937 VLSDILKCLGDN-KKHMRECTLTVLDAWLAAVHLDKMVPY---VTTALT--DAKLGAEGRKDLFDWLSKQLTGLSGF--- 1007 (1739)
Q Consensus 937 l~~~il~~l~D~-K~~vR~aa~~alda~~~~~gl~~~~~~---i~~~L~--~~~~~p~~r~e~l~wl~~~l~~~~~~--- 1007 (1739)
++-+|+..|=|. ...|.-.++.||....+....+.+.++ ++.-+. -...+++.|...+--.. .|......
T Consensus 300 ~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg-~L~~l~g~~~e 378 (533)
T KOG2032|consen 300 QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFG-ALAKLAGGGWE 378 (533)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHH-HHHHHcCCCch
Confidence 999998888763 467778888888888877755554442 222221 01235777876554322 33332211
Q ss_pred ----cchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Q 000275 1008 ----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1739)
Q Consensus 1008 ----~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~ 1053 (1739)
...+.-..|++-.|+|+++-|-+|-+..+-+....++-+.......
T Consensus 379 ~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 379 EFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred hhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 1234456788999999999998887776655555455444444443
No 64
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=94.62 E-value=0.27 Score=52.86 Aligned_cols=111 Identities=23% Similarity=0.381 Sum_probs=84.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc-hhhHhHHHHHHHHHHHHHHhcChhhHhh--hhhhh
Q 000275 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1739)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~-DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1739)
+...||-.=.|=-|.|+ . ++++.-|.+++|++||. ..|.+++..||.++..++.=.|+.|-.. .+-|+
T Consensus 14 l~~~dw~~ileicD~In-------~--~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGLNMEICDIIN-------E--TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHHHHHHHHHHh-------C--CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 45678976555555442 1 33444799999999997 4689999999999999999999999875 56788
Q ss_pred HH-HHHHhccCc---hhHHHHHHHHHHHHHHhcchhhhhHHHHHHHh
Q 000275 939 SD-ILKCLGDNK---KHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1739)
Q Consensus 939 ~~-il~~l~D~K---~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1739)
.. ++..+.++. ..|++-++..+..|..+..-++=++.|.+...
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~ 131 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGVVEVYE 131 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchHHHHHHH
Confidence 87 677776433 48999999999999999865655555555443
No 65
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.52 E-value=0.36 Score=51.83 Aligned_cols=99 Identities=16% Similarity=0.287 Sum_probs=79.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhh--hhhhhH
Q 000275 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1739)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1739)
+.+.||-.=.|=.|.| |. +|++.-|-+++|++||...|.+++..||.++..+..=+|+.|... .+-|+.
T Consensus 14 l~~~dw~~ileicD~I-------n~--~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWEAIQAFCEQI-------NK--EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHHHHHHHHHHH-------Hc--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 4577897544444433 21 355446899999999999999999999999999999999999765 577899
Q ss_pred HHHHHhcc------CchhHHHHHHHHHHHHHHhcch
Q 000275 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHL 969 (1739)
Q Consensus 940 ~il~~l~D------~K~~vR~aa~~alda~~~~~gl 969 (1739)
.++..+.+ .-..|++-.+..+..|.....-
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99998864 3479999999999999988763
No 66
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.48 E-value=0.3 Score=59.26 Aligned_cols=194 Identities=18% Similarity=0.168 Sum_probs=119.7
Q ss_pred CcccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHc--ccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHH
Q 000275 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA--NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVA 923 (1739)
Q Consensus 846 prvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~a--nkrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA 923 (1739)
...|+-.+|- +.+..+.+|+=+.|.+||+.+..++..- -.+|... +.+|..++.+.++-.+..=...|+++++.++
T Consensus 37 ~~~~~e~~L~-~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~-~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ 114 (309)
T PF05004_consen 37 SQEDLEDKLK-EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDR-RETLLDALLKSLKKGKSEEQALAARALALLA 114 (309)
T ss_pred chhHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 3344443332 4678889999999999999999999631 1123322 3677888888775555566788999999999
Q ss_pred HhcC--hhhHhhhhhhhHHHHHHhccCch--hHHHHHHHHHHHHH--Hhcchhhhh---HHHH-----HHHh-ccc---C
Q 000275 924 SAMG--PAVEKSSKGVLSDILKCLGDNKK--HMRECTLTVLDAWL--AAVHLDKMV---PYVT-----TALT-DAK---L 985 (1739)
Q Consensus 924 ~amG--~~~~k~~k~l~~~il~~l~D~K~--~vR~aa~~alda~~--~~~gl~~~~---~~i~-----~~L~-~~~---~ 985 (1739)
.-+| .........+.|.+...+.|.-. .+|.+++.||-... ...+.+.+. +.|- ..++ +++ +
T Consensus 115 ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~ 194 (309)
T PF05004_consen 115 LTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVV 194 (309)
T ss_pred hhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccc
Confidence 9988 55566677788888888888654 57788877776433 333444433 2111 1222 111 0
Q ss_pred ----Ccch-HHHH--HHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000275 986 ----GAEG-RKDL--FDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1739)
Q Consensus 986 ----~p~~-r~e~--l~wl~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1739)
++.+ =.-+ |++|...++...-.......+..+...|+..+.+||.+|-++|..+..
T Consensus 195 ~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 195 AAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1122 2233 444543332211011123334447778899999999999999976644
No 67
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.45 E-value=0.53 Score=56.89 Aligned_cols=164 Identities=21% Similarity=0.258 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHcccCCCCCCc-cchH---HHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHH
Q 000275 869 VRLESIEAVNKILEEANKRIQPAGT-GELF---GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1739)
Q Consensus 869 ~RkEaLe~v~~il~~ankrI~p~~~-geL~---~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~ 944 (1739)
+..-|||-.+-|.+ +|.+..+ .|+. .+|=.=+.-+-..|...-++++...=.-+|+......++++.+++-.
T Consensus 71 VH~KaLevY~~IF~----~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpG 146 (307)
T PF04118_consen 71 VHQKALEVYEYIFE----RIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPG 146 (307)
T ss_pred HHHHHHHHHHHHHH----hcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 46779999888884 5666542 3443 44555567888899999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCC------C--------Ccch
Q 000275 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPDA 1010 (1739)
Q Consensus 945 l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~------~--------~~~~ 1010 (1739)
|-|...-+-+-+...++.+...+|-+-|...+-..+.+ ||..|.-++.|+.++++... . +++.
T Consensus 147 Lede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (307)
T PF04118_consen 147 LEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDP 223 (307)
T ss_pred cccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCc
Confidence 99999999999999999999999999898888877773 57899999999999999876 1 2344
Q ss_pred hhhhhHHhhhcCCCCHHHHHHHHHHHHHH
Q 000275 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEI 1039 (1739)
Q Consensus 1011 ~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1739)
.-++..+++||+|.+-=|++.+-++|-.-
T Consensus 224 ~Llv~al~~~L~D~~iLVqR~~LDlLl~~ 252 (307)
T PF04118_consen 224 GLLVRALCACLEDENILVQRGFLDLLLSH 252 (307)
T ss_pred cHHHHHHHHHhCCchHHHHHHHHHHHHHh
Confidence 55667789999999999999888777443
No 68
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.32 E-value=1.1 Score=50.06 Aligned_cols=111 Identities=18% Similarity=0.278 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhH-HHHHHHhhcCCc
Q 000275 339 IAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV-EDVKTSVKNKVP 417 (1739)
Q Consensus 339 v~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~-e~i~~al~~KnP 417 (1739)
..|-..++-+++.|+.. |...+-..+|.+..+|.|.-+.||..+..+|.-+...+.+.....+ -.++..+.+.||
T Consensus 2 ~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCH
Confidence 45566777788887765 5566777799999999999999999999999998887666666655 888899999999
Q ss_pred hhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCC
Q 000275 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1739)
Q Consensus 418 ~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1739)
.||..+..|+.+......+..+ ....|-++..+++.
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNII----YNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHhCc
Confidence 9999999999999987433333 45556666666653
No 69
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=2.7 Score=55.12 Aligned_cols=341 Identities=18% Similarity=0.171 Sum_probs=193.0
Q ss_pred hhhH-hHHHHHH-HHHHHHHHhcChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchhhh--hHHHHHHHh
Q 000275 906 DSNK-NLVMATL-ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKM--VPYVTTALT 981 (1739)
Q Consensus 906 DsNk-~lv~~al-~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~--~~~i~~~L~ 981 (1739)
|||+ ..+..|+ .||+.||.|=. +..++|+|++...-+..-|+.-.-==|-.+++.-.=-.+ +.+++.+|+
T Consensus 45 dSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~ 118 (968)
T KOG1060|consen 45 DSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALK 118 (968)
T ss_pred hccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhc
Confidence 4444 4555555 57777777533 778999999999999999888887777777766542233 348999999
Q ss_pred cccCCcchHHHHHHHHHHHhccCCCCcchhhhhh-HHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhH
Q 000275 982 DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK-PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPAL 1060 (1739)
Q Consensus 982 ~~~~~p~~r~e~l~wl~~~l~~~~~~~~~~~~~~-p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~ 1060 (1739)
+| ||..|. |--|.|+.++-+ -..+++. .+-.|..|-++-||+.|.-+++.+- +|+|.-+
T Consensus 119 Dp--N~LiRa----sALRvlSsIRvp-~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLY-------------sLd~e~k 178 (968)
T KOG1060|consen 119 DP--NQLIRA----SALRVLSSIRVP-MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLY-------------SLDPEQK 178 (968)
T ss_pred CC--cHHHHH----HHHHHHHhcchh-hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHh-------------cCChhhH
Confidence 88 565555 444556666632 2233322 2445999999999999998887654 4777788
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChH
Q 000275 1061 ALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKE 1140 (1739)
Q Consensus 1061 ~~i~~~l~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~ 1140 (1739)
+.+++++++-=.. .++ . +-+.++
T Consensus 179 ~qL~e~I~~LLaD-----------------------------~sp-l------------------VvgsAv--------- 201 (968)
T KOG1060|consen 179 DQLEEVIKKLLAD-----------------------------RSP-L------------------VVGSAV--------- 201 (968)
T ss_pred HHHHHHHHHHhcC-----------------------------CCC-c------------------chhHHH---------
Confidence 8888888886320 000 0 011111
Q ss_pred HHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCC--------------Ch----
Q 000275 1141 DRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS--------------IR---- 1202 (1739)
Q Consensus 1141 ~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~--------------~~---- 1202 (1739)
..|++.=+|.++.+..-.... -+.|-.-|--.++=.|.||.+.-.+ ++
T Consensus 202 ---------~AF~evCPerldLIHknyrkl-----C~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~ 267 (968)
T KOG1060|consen 202 ---------MAFEEVCPERLDLIHKNYRKL-----CRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCN 267 (968)
T ss_pred ---------HHHHHhchhHHHHhhHHHHHH-----HhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCccccc
Confidence 225554455555442211110 1111111111234456666653211 00
Q ss_pred ----------h-hhhHhHHHHHHHHHHhccCcchHHHHHHhhhhHHHHHHHHhcCCcccHh-HHhhhhhHHHHhhCC---
Q 000275 1203 ----------K-DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES-EAAVFLPCLVEKSGH--- 1267 (1739)
Q Consensus 1203 ----------~-~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~-Ea~~flP~Lv~K~Gd--- 1267 (1739)
. ..=+-++|+|+-..==|+..|++|.+.|-... |+|..- +...|+-.||--+-.
T Consensus 268 ~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~-----------y~lAP~~~~~~i~kaLvrLLrs~~~ 336 (968)
T KOG1060|consen 268 LKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLF-----------YHLAPKNQVTKIAKALVRLLRSNRE 336 (968)
T ss_pred ccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHH-----------HhhCCHHHHHHHHHHHHHHHhcCCc
Confidence 0 00124778888766677899999999865333 444333 444455555543322
Q ss_pred ChHHHHHHHHHHHHHHhhccCccchHHHHHh-hhccCChhh-HhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCCh
Q 000275 1268 NIEKVREKMRELTKQIVNFYSATKTLPYILE-GLRSKNNRT-RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDG 1345 (1739)
Q Consensus 1268 ~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~-glksKN~r~-R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~ 1345 (1739)
.+..|-+.+..+..+-..+| -||+-. =+.|+-+-+ ..==|+.|..|+..-.+. --|++.-.+|.+.|.
T Consensus 337 vqyvvL~nIa~~s~~~~~lF-----~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~-----~ILrE~q~YI~s~d~ 406 (968)
T KOG1060|consen 337 VQYVVLQNIATISIKRPTLF-----EPHLKSFFVRSSDPTQVKILKLEILSNLANESNIS-----EILRELQTYIKSSDR 406 (968)
T ss_pred chhhhHHHHHHHHhcchhhh-----hhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH-----HHHHHHHHHHhcCch
Confidence 33444444443333333222 123211 113333222 222367777776554432 246888888888888
Q ss_pred hHHHHHHHHHHHHHHHhch
Q 000275 1346 EIRKAALNTLATGYKILGE 1364 (1739)
Q Consensus 1346 ~VR~AALn~l~~~y~~~Gd 1364 (1739)
.+-.+|+.+||-+-..+|.
T Consensus 407 ~faa~aV~AiGrCA~~~~s 425 (968)
T KOG1060|consen 407 SFAAAAVKAIGRCASRIGS 425 (968)
T ss_pred hHHHHHHHHHHHHHHhhCc
Confidence 8888888888877666553
No 70
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.40 E-value=31 Score=44.26 Aligned_cols=363 Identities=16% Similarity=0.173 Sum_probs=202.9
Q ss_pred ccch-hhhhHHHHHHHhccC-------CHHHHHHHHHHHHHHHHhcCCC--hhhhHHHHHHHhhcCCchhHHHHHHHHHH
Q 000275 360 FSGS-SRFLLPVLLEKLKEK-------KPTVAESLTQTLQAMHKAGCLN--LVDVVEDVKTSVKNKVPLVRSLTLNWVTF 429 (1739)
Q Consensus 360 F~~y-~~~~lp~lLeklKEK-------K~~V~eA~~~aLda~~~~~~~~--l~~~~e~i~~al~~KnP~vk~et~~~l~r 429 (1739)
|++. +.-++|.+|.-|--. -=++--|+..||..+++. |-. +..+++-+-.-+.+.+..-|....--+..
T Consensus 314 fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~-~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGS 392 (858)
T COG5215 314 FARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL-KGDKIMRPVLGFVEQNIRSESWANREAAVMAFGS 392 (858)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH-hhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhh
Confidence 4433 344677666554322 225667889999988775 311 33445555556667777777766666666
Q ss_pred HHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCC
Q 000275 430 CIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVAT 509 (1739)
Q Consensus 430 ~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~ 509 (1739)
.+.......+.+++.+.+|.+...++|+.--|.+.++.|+|.|.-++-+- ++|- ..|-...-+-..-..+-
T Consensus 393 vm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~-i~p~-~Hl~~~vsa~liGl~D~------- 463 (858)
T COG5215 393 VMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI-ISPC-GHLVLEVSASLIGLMDC------- 463 (858)
T ss_pred hhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh-cCcc-ccccHHHHHHHhhhhcc-------
Confidence 77666677788888899999999999999999999999999999887642 2211 11211111111111110
Q ss_pred CCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 000275 510 GTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEM 589 (1739)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~ 589 (1739)
|. +. . ...... ....--- | + + . ..+ +.-+
T Consensus 464 --p~--~~------------~-ncsw~~-~nlv~h~-a----~-------------------a-----~---~~~-~S~l 492 (858)
T COG5215 464 --PF--RS------------I-NCSWRK-ENLVDHI-A----K-------------------A-----V---REV-ESFL 492 (858)
T ss_pred --ch--HH------------h-hhHHHH-HhHHHhh-h----h-------------------h-----h---ccc-cchh
Confidence 00 00 0 000000 0000000 0 0 0 0 000 0000
Q ss_pred CHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH---HhcCCCccchHHHHHHHHHH
Q 000275 590 SLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV---CMLPGWSEKNVQVQQQVIEV 666 (1739)
Q Consensus 590 s~ee~e~~~~~l~~~~i~~~L~~~~WK~Rl~a~e~l~~~v~~~~~~~~~~~~Lvr~l---~~~PgwkesNfqV~~~~lei 666 (1739)
.-.-++.+..++.. +.+...+...|..+++.|...|.--. |..++++.-+. .++ -|.-.+|+...+..
T Consensus 493 -~~fY~ai~~~Lv~~---t~~~~Ne~n~R~s~fsaLgtli~~~~--d~V~~~~a~~~~~~~~k---l~~~isv~~q~l~~ 563 (858)
T COG5215 493 -AKFYLAILNALVKG---TELALNESNLRVSLFSALGTLILICP--DAVSDILAGFYDYTSKK---LDECISVLGQILAT 563 (858)
T ss_pred -HHHHHHHHHHHHHH---HHhhccchhHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHH---HHHHHHHhhhhhhh
Confidence 11222222223222 34446678889999999988776521 12234443322 222 23344444433322
Q ss_pred HHHHHHhcCCCCccchhhhccchhhcccc-c-hhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHH
Q 000275 667 INYLAATATKFPKKCVVLCLLGISERVAD-I-KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVS 744 (1739)
Q Consensus 667 l~~la~~~~~fs~~~~~~~l~~lveKlgD-~-K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ 744 (1739)
=-.+... .. ......++..+|-+-+- + -+.+...+++..+-|...|.++++.++-.. .-|+.
T Consensus 564 eD~~~~~--el-qSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aI-------------sal~~ 627 (858)
T COG5215 564 EDQLLVE--EL-QSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAI-------------SALST 627 (858)
T ss_pred HHHHHHH--HH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHH-------------HHHHH
Confidence 1111100 00 00112234444444443 2 245667888899999999999999888753 22333
Q ss_pred HHH-HhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHH
Q 000275 745 AVE-DFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1739)
Q Consensus 745 ~i~-eFG~~~l~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~E 812 (1739)
.++ .|- .-+..+|.|+-.+ |.-++-.|-..|+.|+|.+-.-+|.+++.|-.++--.|.+.|..+
T Consensus 628 sl~e~Fe---~y~~~fiPyl~~a-ln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 628 SLEERFE---QYASKFIPYLTRA-LNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSE 692 (858)
T ss_pred HHHHHHH---HHHhhhhHHHHHH-hcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCh
Confidence 332 343 3356788998887 999999999999999999999999999888777666666666544
No 71
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.11 E-value=31 Score=45.16 Aligned_cols=278 Identities=17% Similarity=0.156 Sum_probs=163.2
Q ss_pred hHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcccChhHHHHHHHHHHHHHH-hhCCchhhH
Q 000275 128 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCR-WIGKDPVKT 206 (1739)
Q Consensus 128 ~v~e~ll~~~~~K~PKvv~a~i~~l~~~l~~FG~k~v~~K~ilk~l~~lf~~~dk~VR~ea~~L~velyr-wlG~~~lk~ 206 (1739)
.+.+.+.......-+.|...|+..|-++= + |+|. .|.+.+...+++.+.+-.||.+|.+|+-..-. +.|+. ..
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~-e-g~kL--~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~--e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALS-E-GFKL--SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL--ER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhc-c-cccc--cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc--cc
Confidence 44555666667778999999999886654 4 7753 47888999999999999999999888643322 22331 11
Q ss_pred HHhhhchHHHHHHHHHHHHhcCCC----CCCcc----------------------------hhh-hHHhHhhhhhhcccC
Q 000275 207 ILFEKMRDTMKKELEVELVNVSGT----ARPTR----------------------------KIR-AEQDKELGQELISED 253 (1739)
Q Consensus 207 ~L~~~Lkp~q~keLe~efek~~~~----~~p~R----------------------------~~R-s~q~~~~~~~~~~~~ 253 (1739)
.- + -.+-.++.|.++... .-..| .+| ..-+. +...+-.+
T Consensus 272 e~-~-----e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah--krpk~l~s 343 (823)
T KOG2259|consen 272 ES-E-----EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH--KRPKALYS 343 (823)
T ss_pred hh-h-----hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc--cchHHHHh
Confidence 10 1 123344555543100 00000 011 00000 00000011
Q ss_pred CCC--CCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhh-hcCCCCCCChhHHHHHH
Q 000275 254 VGP--GPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTL 330 (1739)
Q Consensus 254 ~~~--~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~-~~pKi~~~dy~eL~~~L 330 (1739)
.|. .|-.-++..+.++.|. +.+.|..-=-=..|.-.+++-=.-.|+.|++.+..|. +.|.+...-+.=|+
T Consensus 344 ~GewSsGk~~~advpsee~d~----~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLv--- 416 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDE----EEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLV--- 416 (823)
T ss_pred cCCcccCccccccCchhhccc----cccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH---
Confidence 110 0000111222233332 2333332110024555666666778999999999975 67887654333344
Q ss_pred HHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHH
Q 000275 331 KKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKT 410 (1739)
Q Consensus 331 kk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~ 410 (1739)
..++|---.|-..|+..+..|+.-+ .-..-.++.+++.+-|.-..||+++++-|-.. . ++=.++++....
T Consensus 417 -DMfNDE~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~---~~d~~~i~m~v~ 486 (823)
T KOG2259|consen 417 -DMFNDEIEVVRLKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNA-R---VSDLECIDMCVA 486 (823)
T ss_pred -HHhccHHHHHHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C---CCcHHHHHHHHH
Confidence 4455666667888999999999873 23456789999999999999999999887643 1 222234454443
Q ss_pred Hh-h--cCCchhHHHHHHHHHHHHhhCCh
Q 000275 411 SV-K--NKVPLVRSLTLNWVTFCIETSSK 436 (1739)
Q Consensus 411 al-~--~KnP~vk~et~~~l~r~l~~~~~ 436 (1739)
.| + .|.|+=|-+++.-+.+.=++++.
T Consensus 487 ~lL~~L~kyPqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 487 HLLKNLGKYPQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred HHHHHhhhCCCCcHHHHHHHHHHhccChh
Confidence 33 2 58899999999988887777754
No 72
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.46 E-value=0.34 Score=61.28 Aligned_cols=101 Identities=27% Similarity=0.423 Sum_probs=82.4
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhh--hhhh
Q 000275 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1739)
Q Consensus 860 ~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l 937 (1739)
..+.+.||-.=.|=-|.|+ ....+| -|.+++||+|+...|..++..||.++..+.+=+|..|-.+ .+-|
T Consensus 12 ~~l~~pDWa~NleIcD~IN------~~~~~~---~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLIN------STEGGP---KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred ccccCccHHHHHHHHHHHh------cCccCc---HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4577889987666444442 122222 5999999999999999999999999999999999999865 5679
Q ss_pred hHHHHHHhccC--chhHHHHHHHHHHHHHHhcch
Q 000275 938 LSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL 969 (1739)
Q Consensus 938 ~~~il~~l~D~--K~~vR~aa~~alda~~~~~gl 969 (1739)
+..++.+++.+ -..||+-++..|++|.++.+-
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 99999999887 457999999999999988763
No 73
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=92.25 E-value=0.64 Score=47.97 Aligned_cols=75 Identities=20% Similarity=0.382 Sum_probs=60.6
Q ss_pred CCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhhhh--hhhHHHHH-----Hh-ccCchhHHHHHHHHHH
Q 000275 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILK-----CL-GDNKKHMRECTLTVLD 961 (1739)
Q Consensus 890 p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k--~l~~~il~-----~l-~D~K~~vR~aa~~ald 961 (1739)
+....+.+.+|++||.+.|-+++..||.++..+..-.|+.|..+.. .++-.++. .. .|.-..||+-+...+.
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 4456899999999999999999999999999999999999988743 33333322 12 2456799999999999
Q ss_pred HHH
Q 000275 962 AWL 964 (1739)
Q Consensus 962 a~~ 964 (1739)
.|.
T Consensus 112 ~w~ 114 (115)
T cd00197 112 LWA 114 (115)
T ss_pred HHh
Confidence 996
No 74
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.18 E-value=1.2 Score=55.97 Aligned_cols=119 Identities=20% Similarity=0.115 Sum_probs=87.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhH
Q 000275 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (1739)
Q Consensus 326 L~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~ 405 (1739)
.+..|...+.|++-.|-..+++.++.+ .-....+.++.-+++..+.||.++..++-..- .+..
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-------~~~~ 149 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-------HDPG 149 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------cChH
Confidence 488888888888887766666665532 23455677888889999999987775555321 2346
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000275 406 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1739)
Q Consensus 406 e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l 472 (1739)
+-+..+|++..|.||.+.+.-|...=. ...+|.+...+.|.+++||.+|..+++.+
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 778888999999999988877653211 23456677889999999999999988544
No 75
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.07 E-value=1.2 Score=49.89 Aligned_cols=135 Identities=22% Similarity=0.263 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHhc-ccccchhhhhHHHH------------HHHhccCCHHHHHHHHHHHHHHHHhcC---------
Q 000275 341 VAVEAIQAIGNLARGLR-THFSGSSRFLLPVL------------LEKLKEKKPTVAESLTQTLQAMHKAGC--------- 398 (1739)
Q Consensus 341 vv~~A~~~l~~lA~gLr-~~F~~y~~~~lp~l------------LeklKEKK~~V~eA~~~aLda~~~~~~--------- 398 (1739)
|-+.|+.|++.|++... +.|..|-..++|.- -=-++|--+.||.++..+|.++... +
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g-sk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG-SKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc-cHHHHHHHHh
Confidence 45689999999999965 66889999888876 2235788999999999999998753 1
Q ss_pred --------CCh----h----hhHHHHHHHhhc-CCchhHHHHHHHHHHHHhhCChhHHH-HhhhhhHHHHHhhhCCCCHH
Q 000275 399 --------LNL----V----DVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGTPE 460 (1739)
Q Consensus 399 --------~~l----~----~~~e~i~~al~~-KnP~vk~et~~~l~r~l~~~~~~~~~-~~~k~~~~~l~k~l~Ds~~~ 460 (1739)
+++ . ++..-+..++.+ +++++-.+.++-++-.++++|-.-+. .++..++..+...+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 122 2 223445666664 46888889999999888887755444 56677888888899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 000275 461 VRDAAFSVLAAIAKSV 476 (1739)
Q Consensus 461 VR~aa~~~l~~l~k~~ 476 (1739)
||-++..|+|.+.-..
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999987543
No 76
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.54 E-value=0.23 Score=39.17 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=25.1
Q ss_pred hhHHhhhcCCCCHHHHHHHHHHHHHHHHhc
Q 000275 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1739)
Q Consensus 1014 ~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~ 1043 (1739)
+..+..+++|.+++||.+|-.+|+.+++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 345788999999999999999999998863
No 77
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.52 E-value=2.3 Score=54.37 Aligned_cols=185 Identities=17% Similarity=0.187 Sum_probs=133.4
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCC---CCCCChhHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccch-
Q 000275 289 GFWEGVKATKWSERKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1739)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pK---i~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gLr~~F~~y- 363 (1739)
.-..++.|.+=+.+.++..++-++++..+ |...--..++..|-..+. |.|-.+.-.|+-++..||.|--..-.-+
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 45667788888889999999999876443 433212246666777776 8899999999999999999987665555
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhh------HHHHHHHhhcCCc--hhHHHHHHHHHHHHhhCC
Q 000275 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV------VEDVKTSVKNKVP--LVRSLTLNWVTFCIETSS 435 (1739)
Q Consensus 364 ~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~------~e~i~~al~~KnP--~vk~et~~~l~r~l~~~~ 435 (1739)
-...+|.++.-+-.....|++.+.=||-.++.. +..+-|+ ++.++..+.+..+ .+|. +.|.-.-|...+
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn--~tW~LsNlcrgk 226 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRN--ATWTLSNLCRGK 226 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHHH--HHHHHHHHHcCC
Confidence 345678889999999999999998888888765 3344432 3566666666665 4443 345444443332
Q ss_pred -hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh
Q 000275 436 -KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1739)
Q Consensus 436 -~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~ 476 (1739)
+++-...++.++|++..++.+.|++|..-|+-++..+...-
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 22223456889999999999999999999998887765443
No 78
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.29 E-value=42 Score=44.72 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccc-chhhhhHHHHHHHhccC
Q 000275 301 ERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLKEK 378 (1739)
Q Consensus 301 eRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~-~y~~~~lp~lLeklKEK 378 (1739)
.|+.+-.-+.++-. ++.+... +.++..|+..+.|+|..||+.|+..+..|.+-=+..+. .-...++..+|+++.|=
T Consensus 137 vRktaa~~vakl~~~~~~~~~~--~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec 214 (734)
T KOG1061|consen 137 VRKTAAVCVAKLFDIDPDLVED--SGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC 214 (734)
T ss_pred HHHHHHHHHHHhhcCChhhccc--cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh
Confidence 35555444444432 3444322 45789999999999999999999999999988664222 23566677777777765
Q ss_pred CHHHHHHHHHHHHHHHHhc---CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhC
Q 000275 379 KPTVAESLTQTLQAMHKAG---CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN 455 (1739)
Q Consensus 379 K~~V~eA~~~aLda~~~~~---~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~ 455 (1739)
--.-+- .-|+....|. .....++++.+...++|-|+.|-..+.+++-..+...+. ....+.+.+.|+++.+++
T Consensus 215 ~EW~qi---~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls 290 (734)
T KOG1061|consen 215 TEWGQI---FILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLS 290 (734)
T ss_pred hhhhHH---HHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeec
Confidence 554443 3455555541 123557888899999999999999999998888876544 112334666777776664
Q ss_pred C
Q 000275 456 D 456 (1739)
Q Consensus 456 D 456 (1739)
-
T Consensus 291 ~ 291 (734)
T KOG1061|consen 291 S 291 (734)
T ss_pred c
Confidence 3
No 79
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.20 E-value=6.5 Score=51.51 Aligned_cols=331 Identities=17% Similarity=0.191 Sum_probs=173.0
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh
Q 000275 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1739)
Q Consensus 605 ~i~~~L~~~~WK~Rl~a~e~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~ 684 (1739)
++.+.|.+.+=+.+.+||..+...+-..+....-.-.++|+.- |. +=.-+++.|-+.-.++-
T Consensus 24 ~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvl--ps----~~~elKKLly~ywE~vP------------ 85 (948)
T KOG1058|consen 24 EIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVL--PS----RNHELKKLLYYYWELVP------------ 85 (948)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheee--cc----CchHHHHHHHHHHHHcc------------
Confidence 3456678899999999999988665443332112223444432 31 11233444433333322
Q ss_pred hccchhhcc-ccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHH
Q 000275 685 CLLGISERV-ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (1739)
Q Consensus 685 ~l~~lveKl-gD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~~~ 763 (1739)
|. +|.|.... +..+|.++.- - .+|.|-=+|.-+|.|++.+=+ - =-+.++++-+
T Consensus 86 -------Kt~~dgkl~~E----MILvcna~Rk---------D-LQHPNEyiRG~TLRFLckLkE-~----ELlepl~p~I 139 (948)
T KOG1058|consen 86 -------KTDSDGKLLHE----MILVCNAYRK---------D-LQHPNEYIRGSTLRFLCKLKE-P----ELLEPLMPSI 139 (948)
T ss_pred -------ccCCCcccHHH----HHHHHHHHhh---------h-ccCchHhhcchhhhhhhhcCc-H----HHhhhhHHHH
Confidence 21 22343322 2334444332 2 478887788778877765422 1 1134777778
Q ss_pred hhhcCCCccHHHHHHHHHHHHHHHhhh---C---ch-hHhhhhcchH------H-----------HHHHHHHHHhcCCCC
Q 000275 764 KDTGLQSSAAATRNATIKLLGALHKFV---G---PD-IKGFLADVKP------A-----------LLSALDAEYEKNPFE 819 (1739)
Q Consensus 764 k~~~l~~sN~~VR~aAi~Ll~~ly~~~---G---~~-l~~~l~dlkp------a-----------ll~~ie~EF~K~~~~ 819 (1739)
+.+ |+|.++=||..|+-.++++|+-. = |. +..||..+.. | -+.-+..-++.++.=
T Consensus 140 rac-leHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~ 218 (948)
T KOG1058|consen 140 RAC-LEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSF 218 (948)
T ss_pred HHH-HhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCc
Confidence 886 99999999999999999999861 1 11 2334422210 0 111111222222211
Q ss_pred C------------------CCCCcccccc------ccCc----CCC------CCCC-----------------CCC----
Q 000275 820 G------------------TVVPKKTVRA------SEST----SSV------SSGG-----------------SDG---- 844 (1739)
Q Consensus 820 ~------------------~p~p~R~~r~------~~~~----~~~------~~~~-----------------~d~---- 844 (1739)
+ |....|+.|. +.+. +++ +... .|.
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvkl 298 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKL 298 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhh
Confidence 1 1112233221 1110 000 0000 010
Q ss_pred --CCc--------ccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHH
Q 000275 845 --LPR--------EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMA 914 (1739)
Q Consensus 845 --lpr--------vDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~ 914 (1739)
+.| .+|..-+.-+++.-+++++.-+|+-+|+=.-.+++.-| ++|++..||+++.++|-.=...
T Consensus 299 Ivldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN-------vediv~~Lkke~~kT~~~e~d~ 371 (948)
T KOG1058|consen 299 IVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN-------VEDIVQFLKKEVMKTHNEESDD 371 (948)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc-------HHHHHHHHHHHHHhcccccccc
Confidence 111 34445555677888999999999999999999997543 6999999999998776541112
Q ss_pred HHHHHHHHHHhcC---hhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHH
Q 000275 915 TLITLGAVASAMG---PAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRK 991 (1739)
Q Consensus 915 al~ii~~lA~amG---~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~ 991 (1739)
+-+.=+.+-.+|. -.|--++-..+|-+++-++|.....-.+. +..+-++.. + .|.+|.
T Consensus 372 ~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~v----------------l~FvrE~ie--k-~p~Lr~ 432 (948)
T KOG1058|consen 372 NGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDV----------------LMFVREAIE--K-FPNLRA 432 (948)
T ss_pred chHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHH----------------HHHHHHHHH--h-CchHHH
Confidence 2211122222221 23444555666666666666654422221 122233332 1 355677
Q ss_pred HHHHHHHHHhccCCC
Q 000275 992 DLFDWLSKQLTGLSG 1006 (1739)
Q Consensus 992 e~l~wl~~~l~~~~~ 1006 (1739)
.+++-|.+.|+..++
T Consensus 433 ~ii~~l~~~~~~irS 447 (948)
T KOG1058|consen 433 SIIEKLLETFPQIRS 447 (948)
T ss_pred HHHHHHHHhhhhhcc
Confidence 776666666666554
No 80
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=90.87 E-value=1.1 Score=60.90 Aligned_cols=202 Identities=16% Similarity=0.172 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHhhhc--CCCCCCChhHHHHHHHHHhc-cccHH-HHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHh
Q 000275 300 SERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLIT-DVNIA-VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (1739)
Q Consensus 300 keRkEaLe~l~~l~~~--pKi~~~dy~eL~~~Lkk~l~-DsNv~-vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLekl 375 (1739)
-+|+-|.-.|..+.+. +-+. .-|-.|...|-+-+. +.+.+ --...++....++.-|+..|.+ ....+|.++...
T Consensus 748 ~errgael~L~~l~~~fg~sl~-~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~ 825 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLA-AKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFV 825 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHH-HhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhc
Confidence 4677776666655431 1111 012233344444443 33333 5666778888888888888888 888999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCC-hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhh
Q 000275 376 KEKKPTVAESLTQTLQAMHKAGCLN-LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1739)
Q Consensus 376 KEKK~~V~eA~~~aLda~~~~~~~~-l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l 454 (1739)
+---..||-++..|+..+++..|.. +.-+++.+..-++.-.--+|.+...-+..++...--..+..+.--++|++..++
T Consensus 826 ~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~m 905 (1549)
T KOG0392|consen 826 RSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRM 905 (1549)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhccc
Confidence 9999999999999999999874322 334456666666655556666666666666654322222333345789999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhChhH-------HHHHhhcCCHHHHHHHHHHHhcC
Q 000275 455 NDGTPEVRDAAFSVLAAIAKSVGMRP-------LERSIEKLDDVRRNKLSEMIAGS 503 (1739)
Q Consensus 455 ~Ds~~~VR~aa~~~l~~l~k~~Ge~~-------l~~~l~~Ld~~kk~KI~e~~~~~ 503 (1739)
.|.+..||++|.++++.++.+++... |-..|-...+.-++-|+.+++.+
T Consensus 906 sd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldps 961 (1549)
T KOG0392|consen 906 SDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDPS 961 (1549)
T ss_pred ccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCcc
Confidence 99999999999999999999998543 45555555566677777777754
No 81
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=90.71 E-value=0.85 Score=50.95 Aligned_cols=124 Identities=20% Similarity=0.288 Sum_probs=97.7
Q ss_pred ccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHH-cccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHH---H
Q 000275 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---A 923 (1739)
Q Consensus 848 vDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~-ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~l---A 923 (1739)
.|...-| +.|.+.+-.++==-|-=|.+.+..+|.. +..+|-|-+ -.|+..||.-|.-.|..+...+|++++++ .
T Consensus 34 Ldy~~~L-pif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 34 LDYHHYL-PIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred cchhhHH-HHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3433333 3577777777766677788888888876 778899987 99999999999999999999999999999 8
Q ss_pred HhcChhhHhhhhhhhHHHH----H--Hhcc-----CchhHHHHHHHHHHHHHHhcchhhhh
Q 000275 924 SAMGPAVEKSSKGVLSDIL----K--CLGD-----NKKHMRECTLTVLDAWLAAVHLDKMV 973 (1739)
Q Consensus 924 ~amG~~~~k~~k~l~~~il----~--~l~D-----~K~~vR~aa~~alda~~~~~gl~~~~ 973 (1739)
..+|+.--+|-|.++|.+- . .+|| ++.++++-..++|.......|=+.+.
T Consensus 112 ~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~ 172 (183)
T PF10274_consen 112 DMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFI 172 (183)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHH
Confidence 8889999999999988664 1 2232 45788888888888888877765543
No 82
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.19 E-value=18 Score=48.11 Aligned_cols=292 Identities=18% Similarity=0.224 Sum_probs=182.1
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-h
Q 000275 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-V 404 (1739)
Q Consensus 326 L~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~-~ 404 (1739)
|...|++=|..+|..||.+|+..++.|+.. --++-+.|.+-+.++-.|+.||.-+.-|+--+... .-++.+ +
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~s~------EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK-~P~l~e~f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNICSP------EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRK-VPDLVEHF 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccCCH------HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHc-CchHHHHh
Confidence 567788888899999999999999998754 34788999999999999999999776666666554 223333 4
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhh-----------------CCCCHHHHHHHHH
Q 000275 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL-----------------NDGTPEVRDAAFS 467 (1739)
Q Consensus 405 ~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l-----------------~Ds~~~VR~aa~~ 467 (1739)
+......|..|++.|-..++.++.+..+..+. .+. ..+.+++.+++.| .|+.--||
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-~l~-~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~----- 253 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPD-ALS-YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR----- 253 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-HHH-HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-----
Confidence 56667788999999999999999998876542 222 2244566555443 34443343
Q ss_pred HHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCC
Q 000275 468 VLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547 (1739)
Q Consensus 468 ~l~~l~k~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 547 (1739)
+-.+++++|.. |+........++.... +.+ + +
T Consensus 254 -iLrlLriLGq~---------d~daSd~M~DiLaqva----tnt------------------d------------s---- 285 (866)
T KOG1062|consen 254 -ILRLLRILGQN---------DADASDLMNDILAQVA----TNT------------------D------------S---- 285 (866)
T ss_pred -HHHHHHHhcCC---------CccHHHHHHHHHHHHH----hcc------------------c------------c----
Confidence 23344555532 3333333333332210 000 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHH
Q 000275 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627 (1739)
Q Consensus 548 ~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~~~~WK~Rl~a~e~l~~ 627 (1739)
++.. -..+-.|-+. -+.++- .+=+-|.-|+.-+.+
T Consensus 286 ---------------------------skN~-------GnAILYE~V~-TI~~I~----------~~~~LrvlainiLgk 320 (866)
T KOG1062|consen 286 ---------------------------SKNA-------GNAILYECVR-TIMDIR----------SNSGLRVLAINILGK 320 (866)
T ss_pred ---------------------------cccc-------hhHHHHHHHH-HHHhcc----------CCchHHHHHHHHHHH
Confidence 0000 0001112222 111221 133446667766666
Q ss_pred HHHhhhcc--chhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHH
Q 000275 628 QVEAVQNL--DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKC 705 (1739)
Q Consensus 628 ~v~~~~~~--~~~~~~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~ 705 (1739)
++...+.. ......|.|.+..+| .++++ -+.++-.|+ |=.|+-.|..|.|+
T Consensus 321 FL~n~d~NirYvaLn~L~r~V~~d~------------------~avqr----Hr~tIleCL-----~DpD~SIkrralEL 373 (866)
T KOG1062|consen 321 FLLNRDNNIRYVALNMLLRVVQQDP------------------TAVQR----HRSTILECL-----KDPDVSIKRRALEL 373 (866)
T ss_pred HhcCCccceeeeehhhHHhhhcCCc------------------HHHHH----HHHHHHHHh-----cCCcHHHHHHHHHH
Confidence 66553332 122344444444333 12222 122333344 33567789999999
Q ss_pred HHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccC
Q 000275 706 LTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (1739)
Q Consensus 706 L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~ 752 (1739)
+.++...-....++.+++.++-+. .+....++..-|+.+.+.|-..
T Consensus 374 s~~lvn~~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 374 SYALVNESNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHhccccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999998666 9999999999999999999975
No 83
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=89.01 E-value=0.4 Score=42.56 Aligned_cols=51 Identities=27% Similarity=0.307 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHH
Q 000275 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQ 391 (1739)
Q Consensus 341 vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLd 391 (1739)
|-..|+.+|+.++.+.+..+.+|...++|.++..++|....||.++..||-
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 556789999999999999999999999999999999999999999877774
No 84
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=88.99 E-value=25 Score=48.70 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=77.4
Q ss_pred ccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhh---hhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHH
Q 000275 686 LLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF 762 (1739)
Q Consensus 686 l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~---~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~~ 762 (1739)
+..|-|| |-.+|....+-+.-+|=-+|..-|-+++++.+ ...--+-|+.-+|..++.+++---+.-.-++++++-
T Consensus 623 iTfLNDk--Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~ 700 (1431)
T KOG1240|consen 623 ITFLNDK--DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQD 700 (1431)
T ss_pred HHHhcCc--cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHh
Confidence 3444445 55666666666665555555543344443332 355678888888888888887655555566667766
Q ss_pred HhhhcCCCccHHHHHHHHHHHHHHHhhhC---------chhHhhhh
Q 000275 763 CKDTGLQSSAAATRNATIKLLGALHKFVG---------PDIKGFLA 799 (1739)
Q Consensus 763 ~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G---------~~l~~~l~ 799 (1739)
+--. |-|.|.=||.++...+.++|+.++ |-|++||+
T Consensus 701 v~Pl-L~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 701 VLPL-LCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred hhhh-eeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 6667 899999999999999999999888 55888885
No 85
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=88.90 E-value=21 Score=49.46 Aligned_cols=278 Identities=17% Similarity=0.266 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh----hccchhhc
Q 000275 617 ERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL----CLLGISER 692 (1739)
Q Consensus 617 ~Rl~a~e~l~~~v~~~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~----~l~~lveK 692 (1739)
.|++|+|-+...-.-. ..+.-.|-++=|+.+. |.|+-.+|+...++.+..+...-..+....+.. ++|.|-.=
T Consensus 439 tK~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l--~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYI-DDEVKLDRVLPYFVHL--LMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred hHHHHHHHHHHHhhhc-chHHHHhhhHHHHHHH--hcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 4678888766332221 1122345556666543 899999999999999999887666776666554 55555555
Q ss_pred cccc---hhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCcc-------------ch
Q 000275 693 VADI---KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-------------KL 756 (1739)
Q Consensus 693 lgD~---K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~~l-------------~~ 756 (1739)
+-|. -+|-.-..+|-.+|+. .+.++ .+++.++..|+-.- ..
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~t---------A~rFl--------------e~~q~~~~~g~~n~~nset~~~~~~~~~~ 572 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKT---------AYRFL--------------ELTQELRQAGMLNDPNSETAPEQNYNTEL 572 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHH---------HHHHH--------------HHHHHHHhcccccCcccccccccccchHH
Confidence 5552 2444444444444442 11111 11122222222110 01
Q ss_pred ----HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccccccc
Q 000275 757 ----KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASE 832 (1739)
Q Consensus 757 ----K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~ 832 (1739)
+.+-+.+-.. |..+.|.||.+=++-++.+|.|.| |...
T Consensus 573 ~~L~~~V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFG-----------------------k~ks-------------- 614 (1431)
T KOG1240|consen 573 QALHHTVEQMVSSL-LSDSPPIVKRALLESIIPLCVFFG-----------------------KEKS-------------- 614 (1431)
T ss_pred HHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhh-----------------------hccc--------------
Confidence 1222223444 555666777776666666665433 2110
Q ss_pred CcCCCCCCCCCCCCcccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccc-hHHHHhhhcchhhHhH
Q 000275 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLYDSNKNL 911 (1739)
Q Consensus 833 ~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~ge-L~~aLk~Rl~DsNk~l 911 (1739)
+|. |=+-+++=++|++|..|-.-.|.+-.+. -++.+--..| |++-|.+-|.|.--.|
T Consensus 615 ---------ND~---------iLshLiTfLNDkDw~LR~aFfdsI~gvs----i~VG~rs~seyllPLl~Q~ltD~EE~V 672 (1431)
T KOG1240|consen 615 ---------NDV---------ILSHLITFLNDKDWRLRGAFFDSIVGVS----IFVGWRSVSEYLLPLLQQGLTDGEEAV 672 (1431)
T ss_pred ---------ccc---------hHHHHHHHhcCccHHHHHHHHhhccceE----EEEeeeeHHHHHHHHHHHhccCcchhh
Confidence 122 3456778899999999999999987654 3555542233 6667788899999999
Q ss_pred HHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchh----hhhHHHHHHHh
Q 000275 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALT 981 (1739)
Q Consensus 912 v~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~----~~~~~i~~~L~ 981 (1739)
+..||.++..+-+- |-==++|+.-++..++--|-.-..+||.++..-+-+...+.+-. .++|.|-.+|+
T Consensus 673 iv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 673 IVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 99999999877653 32224577778888888889999999999999998888887632 23566666665
No 86
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=88.73 E-value=2.7 Score=43.35 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=67.7
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhh--hhHHHH
Q 000275 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR--FLLPVL 371 (1739)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~--~~lp~l 371 (1739)
+..++|+ .+.++-.++.. .+..+.+++++|+++|.+.|..++..|+.+++.+.+-=+..|..++. .++..+
T Consensus 13 ~~~p~~~----~i~~i~d~~~~---~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l 85 (115)
T cd00197 13 NMGPDWP----LIMEICDLINE---TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVEL 85 (115)
T ss_pred CCCCCHH----HHHHHHHHHHC---CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHH
Confidence 3345664 44444444432 24568899999999999999999999999999999999999998843 233333
Q ss_pred HHHh-------ccCCHHHHHHHHHHHHHHH
Q 000275 372 LEKL-------KEKKPTVAESLTQTLQAMH 394 (1739)
Q Consensus 372 Lekl-------KEKK~~V~eA~~~aLda~~ 394 (1739)
+ +| ++.-.+||+.+.+.+..|+
T Consensus 86 ~-~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 86 L-KFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred H-HhhccccccCCCChHHHHHHHHHHHHHh
Confidence 2 22 2446789999999888885
No 87
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.38 E-value=1.1e+02 Score=41.24 Aligned_cols=371 Identities=15% Similarity=0.177 Sum_probs=206.9
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHcChhhhhhhHHHHHHHHHhhhcCChhhHHHHHHHHHHHHhhcchh---hHHHHHHHH
Q 000275 60 TVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVD---VFLDVMEKA 136 (1739)
Q Consensus 60 ~v~DsN~~aqek~leal~~~l~~a~~~~~~~~~~~~~~lveK~L~~r~~tk~~a~e~~l~~vE~e~~~---~v~e~ll~~ 136 (1739)
.+-|||.-... +||+.-++.--. .|+.+....+++|...-+-....|..-.=-++-|+|- +++ --+.-+-++
T Consensus 42 ~lLdSnkd~~K--leAmKRIia~iA--~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe-qpdLALLSIntfQk~ 116 (968)
T KOG1060|consen 42 QLLDSNKDSLK--LEAMKRIIALIA--KGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE-QPDLALLSINTFQKA 116 (968)
T ss_pred HHHhccccHHH--HHHHHHHHHHHh--cCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-CCCceeeeHHHHHhh
Confidence 46688877654 777765554421 2333445556665554444788888998999999994 443 235667899
Q ss_pred hhccCchhHHHHHHHHHHHHHhhCCCccChhH-HHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHH-------
Q 000275 137 IKNKVAKAVVPAIDVMFQALSEFGAKIIPPKR-ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTIL------- 208 (1739)
Q Consensus 137 ~~~K~PKvv~a~i~~l~~~l~~FG~k~v~~K~-ilk~l~~lf~~~dk~VR~ea~~L~velyrwlG~~~lk~~L------- 208 (1739)
++.+||=+.+.|+.+|..+ ++=-+-| ++-.+++...+.-+-||..|..-+--||+ +|++ -++.|
T Consensus 117 L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e-~k~qL~e~I~~L 188 (968)
T KOG1060|consen 117 LKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPE-QKDQLEEVIKKL 188 (968)
T ss_pred hcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChh-hHHHHHHHHHHH
Confidence 9999999999999988643 3322233 46688899999999999999999998887 3432 22222
Q ss_pred ---------------hhhchHHHHHHHHHHHHhcC---------CCC----CCcchhhhHHhHhhhhhhcccCCCCCCCC
Q 000275 209 ---------------FEKMRDTMKKELEVELVNVS---------GTA----RPTRKIRAEQDKELGQELISEDVGPGPSE 260 (1739)
Q Consensus 209 ---------------~~~Lkp~q~keLe~efek~~---------~~~----~p~R~~Rs~q~~~~~~~~~~~~~~~~~~~ 260 (1739)
|+..=|--++-|.+-|-|+. |+. .=+||-|-+-.. ...+...-++.+.+
T Consensus 189 LaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~---P~~~~~~~e~n~~~ 265 (968)
T KOG1060|consen 189 LADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPD---PTVVDSSLEDNGRS 265 (968)
T ss_pred hcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCC---ccccccccccCccc
Confidence 22223333444444444432 111 124444433210 00000000011100
Q ss_pred CCCCCCCCCC-CccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhccccH
Q 000275 261 ESTADVPPEI-DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNI 339 (1739)
Q Consensus 261 ~~~~~~~~~i-Dp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv 339 (1739)
........++ -||-.=+-+++|=+=.++=||.+-. ..=..+-+.++-++ |+ .+.+-++++|-.+| -+|.
T Consensus 266 ~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~----sVVmA~aql~y~lA--P~---~~~~~i~kaLvrLL-rs~~ 335 (968)
T KOG1060|consen 266 CNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNP----SVVMAVAQLFYHLA--PK---NQVTKIAKALVRLL-RSNR 335 (968)
T ss_pred ccccccccccCCCcccCccHHHHHHhccHHHhcCCc----HHHHHHHhHHHhhC--CH---HHHHHHHHHHHHHH-hcCC
Confidence 0000000000 1111111111111111111111111 11111111122221 22 14555666666654 5666
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhH-----HHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhc
Q 000275 340 AVAVEAIQAIGNLARGLRTHFSGSSRFLL-----PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN 414 (1739)
Q Consensus 340 ~vv~~A~~~l~~lA~gLr~~F~~y~~~~l-----p~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~ 414 (1739)
-+...-+++|..|+..-..=|.||.+.++ |.....+| .+-|..++.. .++..++.++..+.+.
T Consensus 336 ~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lK----------leiLs~La~e--sni~~ILrE~q~YI~s 403 (968)
T KOG1060|consen 336 EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILK----------LEILSNLANE--SNISEILRELQTYIKS 403 (968)
T ss_pred cchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHH----------HHHHHHHhhh--ccHHHHHHHHHHHHhc
Confidence 66777788888888887777999977665 33333332 3455666654 5788899999888874
Q ss_pred CCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000275 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1739)
Q Consensus 415 KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~ 473 (1739)
---.+-..|..-+.||-..... .-..|+..++.+|...++-|=..|...+-.++
T Consensus 404 ~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Ll 457 (968)
T KOG1060|consen 404 SDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLL 457 (968)
T ss_pred CchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 4437888888999999875422 12457788888888888888877776554444
No 88
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.32 E-value=11 Score=49.35 Aligned_cols=184 Identities=18% Similarity=0.212 Sum_probs=129.4
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHh-hhcCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhh
Q 000275 288 SGFWEGVKATKWSERKDAVAELTKL-ASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1739)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l-~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~ 366 (1739)
.|.+.-|.++|==.||-|+--|+++ ++-|- -..+-+.-|+..|.|.-.-|+..|.++|..||+.=.++|=+.+..
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe----Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ 222 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPE----ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPL 222 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhH----hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHH
Confidence 3677889999999999999999885 34321 123345678888899999999999999999999988887666655
Q ss_pred hHHHH--------------------------HHHhccCCHHHHHH------HHHHHHHHHHhc--------CCChhhhHH
Q 000275 367 LLPVL--------------------------LEKLKEKKPTVAES------LTQTLQAMHKAG--------CLNLVDVVE 406 (1739)
Q Consensus 367 ~lp~l--------------------------LeklKEKK~~V~eA------~~~aLda~~~~~--------~~~l~~~~e 406 (1739)
++--| -.|+=|+=.+..+. +-+|++.+.... .-+..-|++
T Consensus 223 ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvq 302 (877)
T KOG1059|consen 223 FYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQ 302 (877)
T ss_pred HHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHH
Confidence 54322 22333333333332 234555555420 011334667
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHH
Q 000275 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLER 483 (1739)
Q Consensus 407 ~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~ 483 (1739)
-+-.++..--|.+|.-.+.-+...+.++|++.. ..-..+++||+|.++.||=.|... ++-+|.++.+..
T Consensus 303 KLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdL---l~gmVskkNl~e 371 (877)
T KOG1059|consen 303 KLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDL---LYGMVSKKNLME 371 (877)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHH---HHHHhhhhhHHH
Confidence 777888999999999999999999999987654 234568899999999999776554 566677665543
No 89
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=87.91 E-value=13 Score=44.72 Aligned_cols=164 Identities=20% Similarity=0.296 Sum_probs=97.9
Q ss_pred HHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCCh----hhhhHhHHHHHHHHHHhccCcchHHHHHHhhhhHH
Q 000275 1162 ELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR----KDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPE 1237 (1739)
Q Consensus 1162 ~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~----~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~ 1237 (1739)
.+++||..-+ +.+..+|||.|...++.|.--+.+.+.-.. ..+|. +-. +..
T Consensus 64 ~meqq~~~el-p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VId-aGv-----------------------VpR 118 (526)
T COG5064 64 PMEQQFYSEL-PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVID-AGV-----------------------VPR 118 (526)
T ss_pred chhHHhhhhh-HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHh-ccc-----------------------cHH
Confidence 4667777666 889999999999999999988888775321 11222 111 222
Q ss_pred HHHHHHhcCCcccHhHHhh--------------------hhhHHHHhhCCChHHHHHHHHHHHHHHhhccCccchHH-HH
Q 000275 1238 LFDTLRDEGYSLTESEAAV--------------------FLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLP-YI 1296 (1739)
Q Consensus 1238 l~~~l~~~~y~lsd~Ea~~--------------------flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~-~l 1296 (1739)
+++.|.+.+-.|-+.||+- -+|.+|.-+-++.+.||+.. .=.+..|-..|-.+. |+
T Consensus 119 fvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQa---vWALGNiAGDS~~~RD~v 195 (526)
T COG5064 119 FVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQA---VWALGNIAGDSEGCRDYV 195 (526)
T ss_pred HHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHH---HHHhccccCCchhHHHHH
Confidence 3334445555666666654 47999999999988888743 334444444444443 44
Q ss_pred Hh--------hhccCChh--hHhHHHHHH-HHHHHhhcCcccCc-----cchHHHHHHHhccCChhHHHHHHHHHH
Q 000275 1297 LE--------GLRSKNNR--TRIECVDLV-GFLIDHHGAEISGQ-----LKSLQIVASLTAERDGEIRKAALNTLA 1356 (1739)
Q Consensus 1297 ~~--------glksKN~r--~R~Ecl~el-~~li~~~G~~v~~~-----~Kal~~ia~~i~drD~~VR~AALn~l~ 1356 (1739)
++ |+=.-|++ .-.--+.|. +.|- .|-+. .| .++|+.++++|-.+|+.|---|.=++.
T Consensus 196 L~~galeplL~ll~ss~~~ismlRn~TWtLSNlc--RGknP-~P~w~~isqalpiL~KLiys~D~evlvDA~WAiS 268 (526)
T COG5064 196 LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC--RGKNP-PPDWSNISQALPILAKLIYSRDPEVLVDACWAIS 268 (526)
T ss_pred HhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh--CCCCC-CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 43 22111211 001112221 2221 24442 22 478999999999999998777766555
No 90
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=86.65 E-value=1e+02 Score=39.15 Aligned_cols=193 Identities=18% Similarity=0.230 Sum_probs=126.2
Q ss_pred HHHhh-cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-chhhHhHHHHHHHHHHHHHHhcChhhHhhh
Q 000275 857 TLVKS-LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1739)
Q Consensus 857 ~l~~~-l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1739)
.+++- ....++-.|.-+++-+-.++ ||........+++..+...+ ...+......++.++.-+++|+=-.-.+.+
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~Lv---NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLV---NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHH---cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 34433 45556999999999998887 57555554567777777777 677777788899999889988843334667
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc--------c--h-----hhhhHHHHHHHhcc--cCCcchHHHHHHHH
Q 000275 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--------H--L-----DKMVPYVTTALTDA--KLGAEGRKDLFDWL 997 (1739)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~--------g--l-----~~~~~~i~~~L~~~--~~~p~~r~e~l~wl 997 (1739)
..++..+++.|+| +.+...+..++.-.+... + . ..++..+...|.+. ..+...|..-|.=|
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~AL 347 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Confidence 7788889999999 666777777776665441 1 1 12233333333211 00122344444444
Q ss_pred HHHhccCCC---CcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000275 998 SKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1739)
Q Consensus 998 ~~~l~~~~~---~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1739)
.--+...+. .+++..+++-++.+|.=.+.+||.++=+.|..++..- .+.+..+++.|
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sL 407 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSL 407 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 444444443 2445555555888998888899999999998888876 77777776654
No 91
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=86.63 E-value=3.9 Score=44.29 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccch--hhhhHHHHHHHhcc-CCHHHHHHHHHHHHHHHHh
Q 000275 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKE-KKPTVAESLTQTLQAMHKA 396 (1739)
Q Consensus 323 y~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y--~~~~lp~lLeklKE-KK~~V~eA~~~aLda~~~~ 396 (1739)
=.+.+++|+++|...|.+|+..|+..++.+.+-=|+.|... .+-++..|...+.+ ..+.|++-+...+..|...
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999866 56677776666666 5778888888888888764
No 92
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=86.50 E-value=8.1 Score=51.74 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=49.3
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000275 408 VKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1739)
Q Consensus 408 i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~ 475 (1739)
|..-++|.||.+|.-++.++. ++. - ..++..+++++.+|++|+.+.||+.|+-|++.+.++
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls-~l~---~---~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLS-LLR---V---KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHH-hcC---h---HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 344567999999998888876 222 2 344688999999999999999999999999998854
No 93
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=86.36 E-value=19 Score=43.95 Aligned_cols=176 Identities=18% Similarity=0.223 Sum_probs=120.3
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhH
Q 000275 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1739)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~l 368 (1739)
.....+.+.+|-.|..+...+..+ +--+.+..|.+.+.|.+..|...|+.+++.+ .. ...+
T Consensus 47 ~~~~~l~~~~~~vr~~aa~~l~~~---------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~-------~~---~~a~ 107 (335)
T COG1413 47 ELLKLLEDEDLLVRLSAAVALGEL---------GSEEAVPLLRELLSDEDPRVRDAAADALGEL-------GD---PEAV 107 (335)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhhh---------chHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-------CC---hhHH
Confidence 455667888899999988774322 1246789999999999999999888855443 22 3456
Q ss_pred HHHHHHhc-cCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchh------------HHHHHHHHHHHHhhCC
Q 000275 369 PVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLV------------RSLTLNWVTFCIETSS 435 (1739)
Q Consensus 369 p~lLeklK-EKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~v------------k~et~~~l~r~l~~~~ 435 (1739)
+++++.+. |....||..+..+|-.+... ..++.+...+++.+..+ |.....= +....
T Consensus 108 ~~li~~l~~d~~~~vR~~aa~aL~~~~~~------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~----l~~~~ 177 (335)
T COG1413 108 PPLVELLENDENEGVRAAAARALGKLGDE------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA----LGELG 177 (335)
T ss_pred HHHHHHHHcCCcHhHHHHHHHHHHhcCch------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH----HHHcC
Confidence 77777777 79999999888888766442 34677788888877333 2111111 11111
Q ss_pred hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh--ChhHHHHHhhcCCHHHHHHHHHHH
Q 000275 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV--GMRPLERSIEKLDDVRRNKLSEMI 500 (1739)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~--Ge~~l~~~l~~Ld~~kk~KI~e~~ 500 (1739)
.....+.+...++|....||.+|..+|+.+-... ....+...+++-+...+.+.-..+
T Consensus 178 -------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 178 -------DPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred -------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 1335678889999999999999999999887773 334566666666655555554444
No 94
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=86.26 E-value=9.4 Score=48.28 Aligned_cols=137 Identities=15% Similarity=0.087 Sum_probs=93.0
Q ss_pred HHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhh
Q 000275 326 VCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV 404 (1739)
Q Consensus 326 L~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~ 404 (1739)
.+..|...+. |...-+...|+-.+... .. ...+..+++.+.|.-..|+.++..+|-. +...+.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~-------~~---~~~~~~L~~~L~d~~~~vr~aaa~ALg~------i~~~~a 118 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ-------ED---ALDLRSVLAVLQAGPEGLCAGIQAALGW------LGGRQA 118 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc-------CC---hHHHHHHHHHhcCCCHHHHHHHHHHHhc------CCchHH
Confidence 4666666774 44444433333322211 11 1138899999999999999988888752 456778
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHH
Q 000275 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (1739)
Q Consensus 405 ~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~ 484 (1739)
..-+...+++..|.+|...+.-+.. .. ..-.+.+.+.|+|.++.||.+|..+||.+-..-....+...
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~----r~--------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~a 186 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGA----HR--------HDPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLY 186 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHh----hc--------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHH
Confidence 8889999999999999777644443 11 11246678889999999999999999987665444455555
Q ss_pred hhcCCH
Q 000275 485 IEKLDD 490 (1739)
Q Consensus 485 l~~Ld~ 490 (1739)
+.+=|+
T Consensus 187 l~d~~~ 192 (410)
T TIGR02270 187 LRDSDP 192 (410)
T ss_pred HcCCCH
Confidence 555443
No 95
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=85.58 E-value=1.1e+02 Score=38.43 Aligned_cols=313 Identities=16% Similarity=0.209 Sum_probs=181.7
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHh----cCCCccc-hHHHHHHHHHHHHHHHHh---c
Q 000275 609 QLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCM----LPGWSEK-NVQVQQQVIEVINYLAAT---A 674 (1739)
Q Consensus 609 ~L~~~~WK~Rl~a~e~l~~~v~~~~~~------~~~~~~Lvr~l~~----~Pgwkes-NfqV~~~~leil~~la~~---~ 674 (1739)
||.+++=-.|++||..|...+...+.. ....+++++++.. +++=++. +.++....+..+..+... .
T Consensus 1 qla~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 1 QLAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 466777778999999999888774332 1223455555533 2333443 777888888888877743 2
Q ss_pred CCCCccchhhhccchhhccccch-hhhHHHHHHHHHHH-hhchHhH----HHHHHHhhhh----cCChhhHHHHHHHHHH
Q 000275 675 TKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSE-AVGPGFI----FERLYKIMKD----HKNPKVLSEGILWMVS 744 (1739)
Q Consensus 675 ~~fs~~~~~~~l~~lveKlgD~K-~r~~a~e~L~~~aE-~~~~~~V----~~~l~~~~~~----~KnPKv~~e~l~wl~~ 744 (1739)
+.++...+..++..+++.+.++. .|..+...|.-+++ .+++.++ .++++..+.. -++-=+..|.|.-+..
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 35666666668888888888865 46777777777766 5666653 3333333322 3345567888888888
Q ss_pred HHHHhccCcc-chHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000275 745 AVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1739)
Q Consensus 745 ~i~eFG~~~l-~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~ 823 (1739)
.+..|--.-+ +...=++++-.. +=|+...||+.|+.++-.+-+.+|+.- .+...+.+.|+..-.++
T Consensus 161 ll~q~p~~M~~~~~~W~~~l~~~-l~~~~k~ir~~a~~l~~~~~~~l~~~~---------~~s~~~~~~~~~~~~~~--- 227 (372)
T PF12231_consen 161 LLSQFPQQMIKHADIWFPILFPD-LLSSAKDIRTKAISLLLEAKKCLGPNK---------ELSKSVLEDLQRSLENG--- 227 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhChhH---------HHHHHHHHHhccccccc---
Confidence 8877753211 112222233333 668899999999999999988888421 11112222222111000
Q ss_pred CccccccccCcCCCCCCCCCCCCcccccccCcHHHHhhcCC-CChHHHHHHHHHHHHHHHHcccCCCCC-CccchHHHHh
Q 000275 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGGLR 901 (1739)
Q Consensus 824 p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d-~~WK~RkEaLe~v~~il~~ankrI~p~-~~geL~~aLk 901 (1739)
+. -.-+.+.+.+-+.+ .+.+.=-..=-.+-.++. ++++.-. .+++.+....
T Consensus 228 --~~-----------------------~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~--~~~~~~w~~~n~wL~v~e 280 (372)
T PF12231_consen 228 --KL-----------------------IQLYCERLKEMIKSKDEYKLAMQIWSVVILLLG--SSRLDSWEHLNEWLKVPE 280 (372)
T ss_pred --cH-----------------------HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhC--CchhhccHhHhHHHHHHH
Confidence 00 00011111112222 111111111112333332 2333332 2477888888
Q ss_pred hhcchhhHhHHHHHHHHHHHHHHhcChhh---HhhhhhhhHHHHHHhccCch-----hHHHHHHHHHH
Q 000275 902 GRLYDSNKNLVMATLITLGAVASAMGPAV---EKSSKGVLSDILKCLGDNKK-----HMRECTLTVLD 961 (1739)
Q Consensus 902 ~Rl~DsNk~lv~~al~ii~~lA~amG~~~---~k~~k~l~~~il~~l~D~K~-----~vR~aa~~ald 961 (1739)
..++.+|..+...|+.+=..+.-++.++- .+..+.|..|+...+.-.+. .+|.+++.++.
T Consensus 281 ~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~ 348 (372)
T PF12231_consen 281 KCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLC 348 (372)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHh
Confidence 89999999999999988888887777543 46678888999887765443 45666665544
No 96
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=85.54 E-value=48 Score=39.61 Aligned_cols=138 Identities=19% Similarity=0.279 Sum_probs=103.5
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh
Q 000275 608 GQLKSAVWKERLEAISSLRQQVEAVQN---LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1739)
Q Consensus 608 ~~L~~~~WK~Rl~a~e~l~~~v~~~~~---~~~~~~~Lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~ 684 (1739)
.-|.+.++..|-.|++-|...++..+. .....++|+.++..+ +.| ..++...+..+..++ +...|+...+..
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~r--l~D--~~~~~~~l~gl~~L~-~~~~~~~~~~~~ 80 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSR--LDD--HACVQPALKGLLALV-KMKNFSPESAVK 80 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHH--hcc--HhhHHHHHHHHHHHH-hCcCCChhhHHH
Confidence 467889999999999999988888543 234467888888753 433 234444477888777 468899999888
Q ss_pred hccchhhccccc----hhhhHHHHHHHHHHHhh-------chHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhcc
Q 000275 685 CLLGISERVADI----KTRAHAMKCLTTFSEAV-------GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (1739)
Q Consensus 685 ~l~~lveKlgD~----K~r~~a~e~L~~~aE~~-------~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~ 751 (1739)
++..+++++... +.|-.+.++|..+.+.. +.+||. .++..+-+-|.|+..--++..+..++.+|-+
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~-~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVY-GFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHH-HHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 998888877664 46888888888887764 556665 4445557799999999999998888877664
No 97
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.87 E-value=3.3 Score=52.71 Aligned_cols=97 Identities=18% Similarity=0.268 Sum_probs=77.9
Q ss_pred hhhccChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccch--hhhhHHH
Q 000275 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1739)
Q Consensus 293 ~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y--~~~~lp~ 370 (1739)
.+...+|--=.|.=|.++.--..+| |.+++|||+|+..|-.|+.+|+.+|+.+.+--|..|... .+-++..
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~~~-------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGGPK-------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccCcH-------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4566777655555444433222333 999999999998888999999999999999999999866 6789999
Q ss_pred HHHHhccC--CHHHHHHHHHHHHHHHHh
Q 000275 371 LLEKLKEK--KPTVAESLTQTLQAMHKA 396 (1739)
Q Consensus 371 lLeklKEK--K~~V~eA~~~aLda~~~~ 396 (1739)
|+.++|.+ =..|++-+...|++|...
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 99999988 456899999999999875
No 98
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.78 E-value=84 Score=40.79 Aligned_cols=362 Identities=17% Similarity=0.156 Sum_probs=205.0
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHH-HcccCCCCCCccchHHHHhhhc-chhhHhHHHHHHHHHHHHHHhcChhhHh
Q 000275 855 TPTLVKSLESPDWKVRLESIEAVNKILE-EANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEK 932 (1739)
Q Consensus 855 t~~l~~~l~d~~WK~RkEaLe~v~~il~-~ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~~~~k 932 (1739)
....+..+.+.+=..+.++..+.-++++ +-|+.|..-+-..+++-|-.-| .+.|-.+.--|+-+++.||.+---.-+-
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 3456677777777789999999999996 3345554433223444444445 5778888999999999998765433333
Q ss_pred hhh-hhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-ch-hhhhH-----HHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000275 933 SSK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-HL-DKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1739)
Q Consensus 933 ~~k-~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-gl-~~~~~-----~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~ 1004 (1739)
++. ..+|-++..|......||+-|.-||--++... .+ +-++. .+...+.....-..+| -+.|.-..|...
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lR--n~tW~LsNlcrg 225 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLR--NATWTLSNLCRG 225 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHH--HHHHHHHHHHcC
Confidence 322 46788999999999999999998887665332 23 22222 2222222211001233 367877788776
Q ss_pred CC-Ccc---hhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCC
Q 000275 1005 SG-FPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 1080 (1739)
Q Consensus 1005 ~~-~~~---~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~ 1080 (1739)
+. .|. ...++..+..+|.+.+++|..-|.-+|.++--+- .|...-- ++-.....+++.|....++...|+=
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~-ne~iq~v---i~~gvv~~LV~lL~~~~~~v~~PaL- 300 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS-NEKIQMV---IDAGVVPRLVDLLGHSSPKVVTPAL- 300 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHHHH---HHccchHHHHHHHcCCCcccccHHH-
Confidence 64 332 3444555777999999999998888887765422 2211111 1123444555665554321100000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhc---------ccCC-CChHHHHhhhhccc
Q 000275 1081 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL---------NVKD-SNKEDRERMVVRRF 1150 (1739)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~K~~R~~~~~~kw 1150 (1739)
..-++ +++. .+.+++.++ .... +.++ -+|+-. =|
T Consensus 301 ---------------RaiGN-------IvtG------------~d~QTq~vi~~~~L~~l~~ll~~s~~~-~ikkEA-cW 344 (514)
T KOG0166|consen 301 ---------------RAIGN-------IVTG------------SDEQTQVVINSGALPVLSNLLSSSPKE-SIKKEA-CW 344 (514)
T ss_pred ---------------hhccc-------eeec------------cHHHHHHHHhcChHHHHHHHhccCcch-hHHHHH-HH
Confidence 00000 0000 012222111 0111 1111 011111 15
Q ss_pred c---ccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHh--HHHHHHHHHHhccCcch
Q 000275 1151 K---FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV--LDILLRWFVLQFCKSNT 1225 (1739)
Q Consensus 1151 ~---f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~--lDlllkw~tlr~~dtN~ 1225 (1739)
. .+.-..+|++.. |...+=+.|+..|-+.||+-+-+|.=.+.-...+-..+.|.- -.-++|=++-.+.-.++
T Consensus 345 ~iSNItAG~~~qiqaV---ida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~ 421 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAV---IDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDV 421 (514)
T ss_pred HHHHhhcCCHHHHHHH---HHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCCh
Confidence 4 344455666666 888999999999999999988888777766554433333220 11134444444455688
Q ss_pred HHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCC
Q 000275 1226 TCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267 (1739)
Q Consensus 1226 ~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd 1267 (1739)
.++..+||-+..+|.+-.... .+.. .-+..+|+..|-
T Consensus 422 ~ii~v~Ld~l~nil~~~e~~~-~~~~----n~~~~~IEe~gg 458 (514)
T KOG0166|consen 422 KIILVALDGLENILKVGEAEK-NRGT----NPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cccc----cHHHHHHHHccC
Confidence 889999999998777643332 1111 455677777764
No 99
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=84.57 E-value=6.1 Score=42.41 Aligned_cols=75 Identities=27% Similarity=0.336 Sum_probs=64.0
Q ss_pred ChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccch--hhhhHHHHHHHhccCCHH----HHHHHHHHHHHHHH
Q 000275 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEKKPT----VAESLTQTLQAMHK 395 (1739)
Q Consensus 322 dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y--~~~~lp~lLeklKEKK~~----V~eA~~~aLda~~~ 395 (1739)
.=.+.+++|+|+|...|.+++..|+..++.+.+--|..|... .+-++..|..-++.++.. |++-+.+.+..|..
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999999999999766 455777777767766665 79999999999987
Q ss_pred h
Q 000275 396 A 396 (1739)
Q Consensus 396 ~ 396 (1739)
.
T Consensus 119 ~ 119 (140)
T PF00790_consen 119 A 119 (140)
T ss_dssp H
T ss_pred H
Confidence 5
No 100
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=84.44 E-value=5.6 Score=48.62 Aligned_cols=111 Identities=16% Similarity=0.319 Sum_probs=86.7
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHh--hhhhhhH
Q 000275 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK--SSKGVLS 939 (1739)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k--~~k~l~~ 939 (1739)
....||-.=.+.-|.|. + .|.+.-|-+++|.+||+-.+.+|+.+||++++.++.-+|+.|.+ .+|.|..
T Consensus 21 nT~enW~~IlDvCD~v~------~---~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~ 91 (462)
T KOG2199|consen 21 NTSENWSLILDVCDKVG------S---DPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTT 91 (462)
T ss_pred cccccHHHHHHHHHhhc------C---CCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHH
Confidence 34568887766666663 2 22443699999999999999999999999999999999999986 4778888
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHh
Q 000275 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1739)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1739)
.+...+.+ .-+.|++.....+..|.+.+.=|.-+.-|.+..+
T Consensus 92 el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~ 134 (462)
T KOG2199|consen 92 ELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPSLSLISALYK 134 (462)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 88888885 4457899999999999997766666655555443
No 101
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=84.23 E-value=8.3 Score=41.54 Aligned_cols=96 Identities=14% Similarity=0.186 Sum_probs=75.0
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccch--hhhhHHHH
Q 000275 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1739)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y--~~~~lp~l 371 (1739)
+.+.+|.-=.|.-|.+. +. +..-.+-+++|+++|+..|.+|+..|+..++.+.+-=|..|... .+-++..|
T Consensus 14 l~~~dw~~ileicD~In---~~----~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 14 NREEDWEAIQAFCEQIN---KE----PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred CCCCCHHHHHHHHHHHH---cC----CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 45677765444444432 11 22235899999999999999999999999999999999999877 46788888
Q ss_pred HHHhccC------CHHHHHHHHHHHHHHHHh
Q 000275 372 LEKLKEK------KPTVAESLTQTLQAMHKA 396 (1739)
Q Consensus 372 LeklKEK------K~~V~eA~~~aLda~~~~ 396 (1739)
+..+..| .+.|++-+.+.+..|...
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8888643 478999999999999874
No 102
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.11 E-value=58 Score=43.53 Aligned_cols=135 Identities=20% Similarity=0.253 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh------
Q 000275 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA------ 396 (1739)
Q Consensus 323 y~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~------ 396 (1739)
..++...|+..-.|-.+..|..|++|||.+|-...+. ..|+..+|+-++=|..-|++.+.-.+.-++.+
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 4557778888888889999999999999999887765 45677777777756655555444444433332
Q ss_pred -----cCCC--------------------------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhh
Q 000275 397 -----GCLN--------------------------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1739)
Q Consensus 397 -----~~~~--------------------------l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~ 445 (1739)
.|.+ -..+++++.+.++...++|+.+.+.=..|+|-..++.+- +.
T Consensus 423 ~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq----~~ 498 (734)
T KOG1061|consen 423 SVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQ----EL 498 (734)
T ss_pred hhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHH----HH
Confidence 1111 224567778888888899999998888888866554321 22
Q ss_pred hHHHHHhhhCCC-CHHHHHHHH
Q 000275 446 YVPICMECLNDG-TPEVRDAAF 466 (1739)
Q Consensus 446 ~~~~l~k~l~Ds-~~~VR~aa~ 466 (1739)
+...|--+.+|+ ++++||.+.
T Consensus 499 l~~vL~~~~~d~~~~dlrDr~l 520 (734)
T KOG1061|consen 499 LQGVLPLATADTDNPDLRDRGL 520 (734)
T ss_pred HHHHHhhhhccccChhhhhhHH
Confidence 334444556665 469999987
No 103
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=83.59 E-value=6.1 Score=42.14 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccch--hhhhHHHHHHHhccCCH--HHHHHHHHHHHHHHHh
Q 000275 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKA 396 (1739)
Q Consensus 322 dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y--~~~~lp~lLeklKEKK~--~V~eA~~~aLda~~~~ 396 (1739)
.=.+.+++|+++|...|.+++..|+..++.+.+-=|..|... .+-++..|...++.+.. .|++-+...+..|...
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999766 34466655555555443 2899999999999875
No 104
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=83.54 E-value=29 Score=42.70 Aligned_cols=155 Identities=17% Similarity=0.148 Sum_probs=99.4
Q ss_pred ChhHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHH----h
Q 000275 322 DFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK----A 396 (1739)
Q Consensus 322 dy~eL~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~----~ 396 (1739)
.-..++..|-.++. ++|=.....++.++..=...++..+ -..++..+..-|+|||++||.+-..++-.++. .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~---~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL---PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC---CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 45788999999998 9999999999888888887774333 36677888889999999999987777766654 1
Q ss_pred cCCC-hhhhHHHHHH----HhhcCCch---------------------------------------------------hH
Q 000275 397 GCLN-LVDVVEDVKT----SVKNKVPL---------------------------------------------------VR 420 (1739)
Q Consensus 397 ~~~~-l~~~~e~i~~----al~~KnP~---------------------------------------------------vk 420 (1739)
.... ..++++.+.+ +..+..|. .-
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~ 175 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLAS 175 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCC
Confidence 0111 2233333333 33343333 12
Q ss_pred HHHHHHHHHHHhhCC----hhHHHHhhhhhHHHHHhhhCCC--CHHHHHHHHHHHHHHHHHhChh
Q 000275 421 SLTLNWVTFCIETSS----KAAVLKVHKDYVPICMECLNDG--TPEVRDAAFSVLAAIAKSVGMR 479 (1739)
Q Consensus 421 ~et~~~l~r~l~~~~----~~~~~~~~k~~~~~l~k~l~Ds--~~~VR~aa~~~l~~l~k~~Ge~ 479 (1739)
.+.+.|+.|+++... ..........+.-.++-++-.+ ..+||..|..++..++..-++.
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 233444444443211 0000000234566677778888 8999999999999998876654
No 105
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.79 E-value=1.5e+02 Score=40.99 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=64.7
Q ss_pred hccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh-cCCChhhhHH
Q 000275 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVE 406 (1739)
Q Consensus 334 l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~-~~~~l~~~~e 406 (1739)
..-||+--+-..+..|+.+|..+|..|.++.-.++=++++++...-+.|...+..|+-+|+.. ++-+++.++.
T Consensus 557 ~~kSnv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~ 630 (1014)
T KOG4524|consen 557 IKKSNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIR 630 (1014)
T ss_pred hhccchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 347888888999999999999999999999999999999999999999999999999999987 2345766653
No 106
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=82.61 E-value=1.1e+02 Score=36.53 Aligned_cols=192 Identities=16% Similarity=0.201 Sum_probs=126.3
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhccccHHH---HHHHHHHHHHHHHHhcccccchhh
Q 000275 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAV---AVEAIQAIGNLARGLRTHFSGSSR 365 (1739)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~v---v~~A~~~l~~lA~gLr~~F~~y~~ 365 (1739)
-|.+++ ..|.-=..+|..+..|.+.+.+.++...++++.+-+-+. ..... -....+++..|...-+..-.....
T Consensus 46 F~~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~-~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~ 122 (262)
T PF14500_consen 46 FFCSRL--DDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNVD-VQSLPQSTRYAVYQLLDSLLENHREALQSMGD 122 (262)
T ss_pred HHHHHh--ccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCC-hhhhhHHHHHHHHHHHHHHHHHhHHHHHhchh
Confidence 456666 478888888999999888777777776677766655333 22222 223344444444332222233344
Q ss_pred hhHHHHHHHh-ccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhh---------cCC-c--hhHHHHHHHHHHHHh
Q 000275 366 FLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK---------NKV-P--LVRSLTLNWVTFCIE 432 (1739)
Q Consensus 366 ~~lp~lLekl-KEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~---------~Kn-P--~vk~et~~~l~r~l~ 432 (1739)
.++..+++-. +||=|.-.--+-+-+..+... ..+.+..|++.+.+. -+| | --|.+.-.=|.+||.
T Consensus 123 ~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~--~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~ 200 (262)
T PF14500_consen 123 DFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE--FDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS 200 (262)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--cccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc
Confidence 4555555544 677775554444555555443 556778888877663 222 2 245677777888887
Q ss_pred hCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCH
Q 000275 433 TSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (1739)
Q Consensus 433 ~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~Ld~ 490 (1739)
.++. +.+..+|.++.-|+.+.+.|+.-+..+|.......|.+.+.++...+=+
T Consensus 201 s~~~-----fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~ 253 (262)
T PF14500_consen 201 STPL-----FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWN 253 (262)
T ss_pred CcHh-----hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 5532 2356789999999999999999999999999999999999999887643
No 107
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.19 E-value=8.2 Score=41.70 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=71.4
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccch--hhhhHHHH
Q 000275 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1739)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y--~~~~lp~l 371 (1739)
+.+.+|.-=.|.-|.+.. .+..=.|.+++|+++|...|.+++..|+..++.+.+--|..|... .+-++..|
T Consensus 17 l~~~dw~~ileicD~In~-------~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l 89 (142)
T cd03569 17 LGEPDLASILEICDMIRS-------KDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDEL 89 (142)
T ss_pred cCccCHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHH
Confidence 355677655555444421 123346899999999999999999999999999999999998765 45566666
Q ss_pred HHHhc-cCCHHHHHHHHHHHHHHHHh
Q 000275 372 LEKLK-EKKPTVAESLTQTLQAMHKA 396 (1739)
Q Consensus 372 LeklK-EKK~~V~eA~~~aLda~~~~ 396 (1739)
..-+. ...+.|++-+...+..|...
T Consensus 90 ~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 90 KDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 65554 35557888888888888865
No 108
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=82.00 E-value=11 Score=40.04 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=71.7
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccch-hh-hhHHHH
Q 000275 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR-FLLPVL 371 (1739)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y-~~-~~lp~l 371 (1739)
+.+.+|.-=.|.-|.+.. . +.+=.+.+++|+++|...|.+++..|+.+++.+.+--|+.|... +. -++..+
T Consensus 13 ~~~~D~~~il~icd~I~~----~---~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l 85 (133)
T cd03561 13 LEEPDWALNLELCDLINL----K---PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLEL 85 (133)
T ss_pred cCCccHHHHHHHHHHHhC----C---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHH
Confidence 345667554444443321 1 44457899999999999999999999999999999999999766 32 566666
Q ss_pred HHHhccC---CHHHHHHHHHHHHHHHHh
Q 000275 372 LEKLKEK---KPTVAESLTQTLQAMHKA 396 (1739)
Q Consensus 372 LeklKEK---K~~V~eA~~~aLda~~~~ 396 (1739)
..-+..+ .+.|++-+.+.+..|..+
T Consensus 86 ~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 86 VKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 6666653 567888888888888875
No 109
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.92 E-value=60 Score=42.69 Aligned_cols=304 Identities=16% Similarity=0.187 Sum_probs=185.4
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC--hh---
Q 000275 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KA--- 437 (1739)
Q Consensus 364 ~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~-~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~--~~--- 437 (1739)
...+...+..-+.+.-..||.++.++|-++.. + ..|.. +.....+.|.+-+-.||.++...+.-+=..++ ..
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g-~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSE-G-FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-c-ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 44445558888999999999999999999977 2 55554 45777899999999999999776664444332 11
Q ss_pred HHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc--CCHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000275 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK--LDDVRRNKLSEMIAGSGGDVATGTSSAR 515 (1739)
Q Consensus 438 ~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~--Ld~~kk~KI~e~~~~~~~~~~~~~~~~~ 515 (1739)
.-.++.......++..++|..-.||=-|+++||.+- .+.+..+.+.|++ +...+|++-
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~-~vSee~i~QTLdKKlms~lRRkr~------------------- 333 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFE-QVSEEIIQQTLDKKLMSRLRRKRT------------------- 333 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHH-HhHHHHHHHHHHHHHhhhhhhhhh-------------------
Confidence 112444556677889999999999999999999754 4555566555542 122222210
Q ss_pred ccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHH
Q 000275 516 VQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIE 595 (1739)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e 595 (1739)
+. ++|..-- ++|.=+ ++++-.+ | .+.|+..
T Consensus 334 ---------ah------------------krpk~l~---------s~GewS------sGk~~~a---d-----vpsee~d 363 (823)
T KOG2259|consen 334 ---------AH------------------KRPKALY---------SSGEWS------SGKEWNA---D-----VPSEEDD 363 (823)
T ss_pred ---------cc------------------cchHHHH---------hcCCcc------cCccccc---c-----Cchhhcc
Confidence 00 0000000 000000 0000000 0 0123333
Q ss_pred HHHhccCc----HhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH
Q 000275 596 SRLGSLIP----ADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (1739)
Q Consensus 596 ~~~~~l~~----~~i~~~L~~~~WK~Rl~a~e~l~~~v~~-~~~~~~~~~~Lvr~l~~~PgwkesNfqV~~~~leil~~l 670 (1739)
+....+|+ +.++.+|.+--.-.|-+|+.++.....+ .+--....|.|+.+ |+|----|-.+.+..++.+
T Consensus 364 ~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDM------fNDE~~~VRL~ai~aL~~I 437 (823)
T KOG2259|consen 364 EEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDM------FNDEIEVVRLKAIFALTMI 437 (823)
T ss_pred ccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH------hccHHHHHHHHHHHHHHHH
Confidence 33344665 3557888888888999999999866544 22222334555554 5777778888999999998
Q ss_pred HHhcCCCCccchhhhccchhhccccchhhhHHHHHHHH--HHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHH
Q 000275 671 AATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTT--FSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 748 (1739)
Q Consensus 671 a~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~--~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~e 748 (1739)
+.+ ..+-......++..+.|.. ++.|+...++|-. +........++..+++.+ -|-|+=+-|.+.+|..+=..
T Consensus 438 s~~-l~i~eeql~~il~~L~D~s--~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L--~kyPqDrd~i~~cm~~iGqn 512 (823)
T KOG2259|consen 438 SVH-LAIREEQLRQILESLEDRS--VDVREALRELLKNARVSDLECIDMCVAHLLKNL--GKYPQDRDEILRCMGRIGQN 512 (823)
T ss_pred HHH-heecHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh--hhCCCCcHHHHHHHHHHhcc
Confidence 876 4555555555666655554 3456777776643 444555566666666655 46677777777666554443
Q ss_pred hc
Q 000275 749 FG 750 (1739)
Q Consensus 749 FG 750 (1739)
+|
T Consensus 513 H~ 514 (823)
T KOG2259|consen 513 HR 514 (823)
T ss_pred Ch
Confidence 33
No 110
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=81.91 E-value=2.8e+02 Score=40.28 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHhccCcchH------HHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCC-ChHHHHHHHHHHH
Q 000275 1208 VLDILLRWFVLQFCKSNTT------CLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH-NIEKVREKMRELT 1280 (1739)
Q Consensus 1208 ~lDlllkw~tlr~~dtN~~------vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd-~k~~vR~~vr~i~ 1280 (1739)
.++|+...+....-+-++- --.+.+.|+..||-.-.-.-.-|+---+..+.|||..|+-. ....|-..|-.|+
T Consensus 1025 ~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Il 1104 (1692)
T KOG1020|consen 1025 VLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQIL 1104 (1692)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHH
Confidence 4666666665555443322 23467888888887777777777777888999999999422 3334445555666
Q ss_pred HH-HhhccCccchHHHHH-----hhhccCChhhHhHHHHHHHHHHHh--hcCcc---cCc--cchHHHHHHHhc
Q 000275 1281 KQ-IVNFYSATKTLPYIL-----EGLRSKNNRTRIECVDLVGFLIDH--HGAEI---SGQ--LKSLQIVASLTA 1341 (1739)
Q Consensus 1281 ~~-~~~vyp~skvf~~l~-----~glksKN~r~R~Ecl~el~~li~~--~G~~v---~~~--~Kal~~ia~~i~ 1341 (1739)
+. ++++--+|--|-+-+ .-+-.-|-++=.||..-+|.+..+ +|+.+ |.. .|.|+.+.....
T Consensus 1105 e~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~ 1178 (1692)
T KOG1020|consen 1105 ECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNN 1178 (1692)
T ss_pred HHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 43 344444455554333 344556778899999999999986 78776 333 466676666543
No 111
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=81.77 E-value=35 Score=41.66 Aligned_cols=147 Identities=12% Similarity=0.137 Sum_probs=106.0
Q ss_pred ccChHHHHHHHHHHHHhhh--cCCCCC-CChhHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccc-ccchhhhhHHH
Q 000275 296 ATKWSERKDAVAELTKLAS--TKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPV 370 (1739)
Q Consensus 296 s~KWkeRkEaLe~l~~l~~--~pKi~~-~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gLr~~-F~~y~~~~lp~ 370 (1739)
.+.|-|=-..|..|.+.++ ++.+.- .+=..+.+.|..+++ -----|=..|+++.+.|=+.+|+. +.+....+
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~--- 98 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIY--- 98 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHH---
Confidence 5778888888888888666 444332 333467777777776 555566677777777777666643 33333333
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHH
Q 000275 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (1739)
Q Consensus 371 lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l 450 (1739)
...+...+.+-.-+||...+..+.+.+-..++ .+..+++.++..+
T Consensus 99 ----------------------------------~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~sl 143 (307)
T PF04118_consen 99 ----------------------------------SPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSL 143 (307)
T ss_pred ----------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHh
Confidence 34455566666677888888888877765555 5556778889999
Q ss_pred HhhhCCCCHHHHHHHHHHHHHHHHHhChhH
Q 000275 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1739)
Q Consensus 451 ~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~ 480 (1739)
+.+++|.+.|+-+.....|..+...+|.+.
T Consensus 144 LpGLede~sE~~~~~~~ll~~l~~~v~~~~ 173 (307)
T PF04118_consen 144 LPGLEDEGSEFFDRTLKLLDKLKEAVGDKY 173 (307)
T ss_pred ccccccCCchHHHHHHHHHHHHHHhcChhH
Confidence 999999999999999999999999999883
No 112
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=80.73 E-value=17 Score=44.00 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHcChhhhhh--hHHHHHHHHHhhhcC-ChhhHHHHHHHHHHHHhhcc--hhhHHHHHHHHhhccCchhHH
Q 000275 72 ALDALIAYLKAADADAGRY--AKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEA--VDVFLDVMEKAIKNKVAKAVV 146 (1739)
Q Consensus 72 ~leal~~~l~~a~~~~~~~--~~~~~~~lveK~L~~-r~~tk~~a~e~~l~~vE~e~--~~~v~e~ll~~~~~K~PKvv~ 146 (1739)
.|..+...+++...+.... -.+++..+|-.++.+ .+..++.|.+|+=+|+=++. ....+..+...+..-.+-|..
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~ 82 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKI 82 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3444555666654222222 237788888888874 78999999999999987764 345666677777666899999
Q ss_pred HHHHHHHHHHHhhCCCccCh----------hHHHhhchhhhcccChhHHHHHHHHHHHHH
Q 000275 147 PAIDVMFQALSEFGAKIIPP----------KRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1739)
Q Consensus 147 a~i~~l~~~l~~FG~k~v~~----------K~ilk~l~~lf~~~dk~VR~ea~~L~vely 196 (1739)
.|+.++..++..||...++. ..+++.+-+.+.+.|+.||..+..-+.-|.
T Consensus 83 ~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 83 TALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999976642 358999999999999999988766555443
No 113
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=80.27 E-value=39 Score=38.16 Aligned_cols=155 Identities=20% Similarity=0.183 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHhhhcCCCCc-hh-hhhh------------hhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhh
Q 000275 26 KVRNEANIDLAALCDSITDPKD-NR-IREL------------GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYA 91 (1739)
Q Consensus 26 KaRl~ayeel~~~f~~~~d~~d-~~-~~~~------------~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~~ 91 (1739)
|.|++|..-+...++.. +.+. .- |..| .+++.-+..|.|.-+.-.++.++.+++++... +-..+
T Consensus 1 kvR~~Al~~L~al~k~~-~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~-~L~~A 78 (182)
T PF13251_consen 1 KVRQAALQCLQALAKST-DKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKP-FLAQA 78 (182)
T ss_pred ChhHHHHHHHHHHHHhc-CCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHH-HHHHH
Confidence 78999999998888753 2221 01 1111 34555568999999999999999999988633 11111
Q ss_pred HHHHHHHHHhhhcCChhhHHHHHHHHHHHHhhcchhhHHHHHHHHhh-ccCchhHHHHHHHHHHHHHhhCCCccC---hh
Q 000275 92 KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIP---PK 167 (1739)
Q Consensus 92 ~~~~~~lveK~L~~r~~tk~~a~e~~l~~vE~e~~~~v~e~ll~~~~-~K~PKvv~a~i~~l~~~l~~FG~k~v~---~K 167 (1739)
++-- .+.. .=-..|..+..+..| +=..|+-++. .+++-+...++.++..++...=..-++ +.
T Consensus 79 e~~~----~~~~----sFtslS~tLa~~i~~------lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~ 144 (182)
T PF13251_consen 79 EESK----GPSG----SFTSLSSTLASMIME------LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT 144 (182)
T ss_pred HhcC----CCCC----CcccHHHHHHHHHHH------HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHH
Confidence 1000 0110 111123344444443 2333444444 467888999999999888887776665 56
Q ss_pred HHHhhchhhhcccChhHHHHHHHHHHHHH
Q 000275 168 RILKMLPELFDHQDQNVRASSKGLTLELC 196 (1739)
Q Consensus 168 ~ilk~l~~lf~~~dk~VR~ea~~L~vely 196 (1739)
.++..+.+++.|.|.+||-.+-..++.+-
T Consensus 145 ~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 145 EVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999999999877766553
No 114
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=78.12 E-value=28 Score=39.31 Aligned_cols=117 Identities=16% Similarity=0.232 Sum_probs=80.9
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHh-cCCC----hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC--hhH
Q 000275 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLN----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KAA 438 (1739)
Q Consensus 366 ~~lp~lLeklKEKK~~V~eA~~~aLda~~~~-~~~~----l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~--~~~ 438 (1739)
.++|-++|-+.|++-.-+=-+.+++.-+... +.-. +.+++-.|..||.+++|.|...++.-|...+...+ -..
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4567777777777766555444444444443 1111 44566678899999999999999999988765443 234
Q ss_pred HHHhhhhhHHHHH--hhhC---------CCCHHHHHHHHHHHHHHHHHhChhHHH
Q 000275 439 VLKVHKDYVPICM--ECLN---------DGTPEVRDAAFSVLAAIAKSVGMRPLE 482 (1739)
Q Consensus 439 ~~~~~k~~~~~l~--k~l~---------Ds~~~VR~aa~~~l~~l~k~~Ge~~l~ 482 (1739)
+.+..+.++|.+- +.-+ .....++|--.++|..+=+.=|++++.
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~ 172 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFI 172 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHH
Confidence 4566677777766 2222 456889999999999999999987653
No 115
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=78.04 E-value=10 Score=40.92 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=71.8
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccch--hhhhHHH
Q 000275 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1739)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gLr~~F~~y--~~~~lp~ 370 (1739)
+.+.+|.-=.|.-|.+. .. ...=.+.+++|+++|. ..|.+|+..|+..++.+.+-=|..|... .+-++..
T Consensus 14 l~~~dw~~ileicD~In----~~---~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e 86 (141)
T cd03565 14 LQSEDWGLNMEICDIIN----ET---EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKD 86 (141)
T ss_pred CCCcCHHHHHHHHHHHh----CC---CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhH
Confidence 45567866555444432 11 2224589999999998 6799999999999999999999999877 3567776
Q ss_pred -HHHHhccCC---HHHHHHHHHHHHHHHHh
Q 000275 371 -LLEKLKEKK---PTVAESLTQTLQAMHKA 396 (1739)
Q Consensus 371 -lLeklKEKK---~~V~eA~~~aLda~~~~ 396 (1739)
|+..+..+. ..|++-+.+.+..|...
T Consensus 87 ~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 87 VLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 666666543 37888888999988764
No 116
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=77.85 E-value=12 Score=40.88 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=57.1
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcC----CCCCCChhHHHHHHHHHhc-cc-------cH--HHHHHHHHHHHHHHH
Q 000275 289 GFWEGVKATKWSERKDAVAELTKLASTK----RIAPGDFTEVCRTLKKLIT-DV-------NI--AVAVEAIQAIGNLAR 354 (1739)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~p----Ki~~~dy~eL~~~Lkk~l~-Ds-------Nv--~vv~~A~~~l~~lA~ 354 (1739)
+....|.|.|=+||.+||++|..+++.+ .+..-.|..++.+|-+.+. .. +. .-+..+.+-++..|.
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 4677899999999999999999988654 3445679999999988774 22 11 233345566666666
Q ss_pred HhcccccchhhhhHHHHHHHhccCC
Q 000275 355 GLRTHFSGSSRFLLPVLLEKLKEKK 379 (1739)
Q Consensus 355 gLr~~F~~y~~~~lp~lLeklKEKK 379 (1739)
.|| .++-.-..++|-|+
T Consensus 88 ~lR--------~~ve~~~~~~k~kt 104 (155)
T PF11640_consen 88 ALR--------LFVEKSNSRLKRKT 104 (155)
T ss_pred HHH--------HHHHHHHhhcccch
Confidence 655 34444455666665
No 117
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=77.82 E-value=7.8 Score=40.84 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=62.0
Q ss_pred CCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHH---h--------ccCCHHHHHHHH
Q 000275 319 APGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK---L--------KEKKPTVAESLT 387 (1739)
Q Consensus 319 ~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLek---l--------KEKK~~V~eA~~ 387 (1739)
.+++..+++..|-++|.|.+..|-..+++||..++..=+..|....+--...|-+. - .+--..||+++.
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~ 111 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQ 111 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHH
Confidence 34668899999999999999888899999999999998888988766554433221 1 234568999999
Q ss_pred HHHHHHHHh
Q 000275 388 QTLQAMHKA 396 (1739)
Q Consensus 388 ~aLda~~~~ 396 (1739)
+++.++|.+
T Consensus 112 El~~~if~~ 120 (122)
T cd03572 112 ELIKAIFSY 120 (122)
T ss_pred HHHHHHhcc
Confidence 999999875
No 118
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.70 E-value=46 Score=44.01 Aligned_cols=129 Identities=17% Similarity=0.232 Sum_probs=92.0
Q ss_pred cchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhh--ccCccchHHHHHh--
Q 000275 1223 SNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVN--FYSATKTLPYILE-- 1298 (1739)
Q Consensus 1223 tN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~--vyp~skvf~~l~~-- 1298 (1739)
.|.+.--++|+|+..+|+-|- +|.+++-=..-|+-||+--.--+--+||-++-.|+..+.. .--..-||.-|.+
T Consensus 54 Kresi~dRIl~fla~fv~sl~--q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l 131 (892)
T KOG2025|consen 54 KRESIPDRILSFLARFVESLP--QLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKL 131 (892)
T ss_pred cCCCcHHHHHHHHHHHHHhhh--ccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHH
Confidence 455566788999999999887 7788888666666666544433556899999999999887 4455566766655
Q ss_pred --hhccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHh-ccCChhHHHHHHHHHH
Q 000275 1299 --GLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLT-AERDGEIRKAALNTLA 1356 (1739)
Q Consensus 1299 --glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i-~drD~~VR~AALn~l~ 1356 (1739)
-++-|-+-+|.|.+--|.++-+.-|= .........+..| .|..+.||.|||.++.
T Consensus 132 ~~Rl~Drep~VRiqAv~aLsrlQ~d~~d---ee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 132 LIRLKDREPNVRIQAVLALSRLQGDPKD---EECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHHHhccCchHHHHHHHHHHHHhcCCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 45778888999999888887532221 1112234445555 4899999999999886
No 119
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=76.25 E-value=63 Score=43.78 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=112.8
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccch-hhhhHHHHH
Q 000275 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLL 372 (1739)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y-~~~~lp~lL 372 (1739)
++++.=++|.+|+..+...... ..|...|+..+-|-+.--|+-+=-+--==+...|++ .|. ....++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~----G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~-----~P~~~lLavNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSL----GEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKL-----KPELALLAVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHH
Confidence 7888889999999987653221 123555555444444333333333333333344433 333 778899999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhh-hHHHHH
Q 000275 373 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YVPICM 451 (1739)
Q Consensus 373 eklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~-~~~~l~ 451 (1739)
.-|.|..+-+|-.+..++-.+=.. -=++.+++.|...++|++|.||..+..-+..+++-.+.-. +.. .+-++.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~----~~~g~~~~l~ 172 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLY----HELGLIDILK 172 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhh----hcccHHHHHH
Confidence 999999999999887777655321 1144566788889999999999999999999987442211 122 455667
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHH
Q 000275 452 ECLNDGTPEVRDAAFSVLAAIAK 474 (1739)
Q Consensus 452 k~l~Ds~~~VR~aa~~~l~~l~k 474 (1739)
.++.|++|.|--+|..+|..+-.
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhch
Confidence 78889999999999888877653
No 120
>PF05536 Neurochondrin: Neurochondrin
Probab=75.94 E-value=37 Score=44.72 Aligned_cols=175 Identities=15% Similarity=0.112 Sum_probs=120.2
Q ss_pred HHHHHHHhhhcCCCCC-CChhHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccch-hhhhHHHHHHHhccCCHH
Q 000275 305 AVAELTKLASTKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPT 381 (1739)
Q Consensus 305 aLe~l~~l~~~pKi~~-~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gLr~~F~~y-~~~~lp~lLeklKEKK~~ 381 (1739)
|+.-|...+..|.+.. .++-+-+..|-+++. .+...++..+++|+..|+ +-.++.... ....++.+.+-+.. ++.
T Consensus 77 avsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~ 154 (543)
T PF05536_consen 77 AVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSF 154 (543)
T ss_pred HHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-Ccc
Confidence 3444455666777774 568888889999997 555799999999999999 555554433 45678888888777 777
Q ss_pred HHHHHHHHHHHHHHhcC--------CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh-----HHHHhhhhhHH
Q 000275 382 VAESLTQTLQAMHKAGC--------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA-----AVLKVHKDYVP 448 (1739)
Q Consensus 382 V~eA~~~aLda~~~~~~--------~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~-----~~~~~~k~~~~ 448 (1739)
..|-+...|..++.... ..+..++..+..-+..---..|-+.+.+|...|...+.- ....-.+++..
T Consensus 155 ~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~ 234 (543)
T PF05536_consen 155 QMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRK 234 (543)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHH
Confidence 77777777766654311 112244455555555555567889999999999876311 11122344444
Q ss_pred HHHhhh-CCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000275 449 ICMECL-NDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1739)
Q Consensus 449 ~l~k~l-~Ds~~~VR~aa~~~l~~l~k~~Ge~~l 481 (1739)
.+...| +-..+.-|+.+..+.+.++.+.|.+.+
T Consensus 235 gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl 268 (543)
T PF05536_consen 235 GLRDILQSRLTPSQRDPALNLAASLLDLLGPEWL 268 (543)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhh
Confidence 444444 667789999999999999999998754
No 121
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.64 E-value=69 Score=39.47 Aligned_cols=181 Identities=19% Similarity=0.215 Sum_probs=121.8
Q ss_pred CCCChHHHHHHHHHHHHHHH---HcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhh-hhhhh
Q 000275 863 ESPDWKVRLESIEAVNKILE---EANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVL 938 (1739)
Q Consensus 863 ~d~~WK~RkEaLe~v~~il~---~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~-~k~l~ 938 (1739)
.+.+=..|-.|||.++..++ .||..++-++ +...|. -+++++..|-..|+.+||..+.-=-+.-+.. -...+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~gg---l~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGG---LVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGAL 168 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccC---HHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence 44556778899999999986 3777777655 666666 7899999999999999988775433222222 12356
Q ss_pred HHHHHHhc-cCchhHHHHHHHHHHHHHHhc--chhhhhH-----HHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcc-
Q 000275 939 SDILKCLG-DNKKHMRECTLTVLDAWLAAV--HLDKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD- 1009 (1739)
Q Consensus 939 ~~il~~l~-D~K~~vR~aa~~alda~~~~~--gl~~~~~-----~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~~~~~- 1009 (1739)
..++..|. |.--.+|..|+-|+.+-...- |.+.|+. .+.++|.+++.+..++.-++..+..-+.......+
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 66666665 444578899999998887653 6677765 68889987666777888888888877766654322
Q ss_pred hhhhhhH--HhhhcCCCCHHHHHHHHHHHHHHHHhcCHHH
Q 000275 1010 AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQET 1047 (1739)
Q Consensus 1010 ~~~~~~p--~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~ 1047 (1739)
.....-+ +.....-=..+++.++-.++..++...-...
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~ 288 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRK 288 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 2222222 2222222245788888877777766554443
No 122
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=74.35 E-value=6.6 Score=52.56 Aligned_cols=107 Identities=19% Similarity=0.251 Sum_probs=89.8
Q ss_pred hhhhhhccChHHHHHHHHHHHHh-hhcCCCCCCChhHHHHHHHHHhc--ccc-HHHHHHHHHHHHHHHHHhc-ccccchh
Q 000275 290 FWEGVKATKWSERKDAVAELTKL-ASTKRIAPGDFTEVCRTLKKLIT--DVN-IAVAVEAIQAIGNLARGLR-THFSGSS 364 (1739)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l-~~~pKi~~~dy~eL~~~Lkk~l~--DsN-v~vv~~A~~~l~~lA~gLr-~~F~~y~ 364 (1739)
+.+.+.=..---|.+.|+-+..+ ...+-+.+.+.+.++..+-.+=. |.| ..|-..|++|++.|.+-+. +...+|.
T Consensus 914 LLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr 993 (1030)
T KOG1967|consen 914 LLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR 993 (1030)
T ss_pred HHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc
Confidence 45666668888899999998874 46788888888888888877765 555 5666789999999999887 5588999
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 000275 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1739)
Q Consensus 365 ~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~ 396 (1739)
..++.++...+.|||--||.-+..|=..|+.-
T Consensus 994 ~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l 1025 (1030)
T KOG1967|consen 994 PLVLRALIKILDDKKRLVRKEAVDTRQNWYML 1025 (1030)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHhhhhhhc
Confidence 99999999999999999999999999999764
No 123
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.20 E-value=3.3e+02 Score=36.89 Aligned_cols=112 Identities=14% Similarity=0.169 Sum_probs=79.7
Q ss_pred HHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHHhccCcchHHHHHHhhhhHHHHHHHHhcCCcccHh
Q 000275 1173 EDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252 (1739)
Q Consensus 1173 ~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~ 1252 (1739)
=+++.-|-+.|+--+=|+++...+...+..-+-| + -.+-.++.+||..-.-+.-.|=+.|+..+-...-.+.|+
T Consensus 320 mDvLrvLss~dldvr~Ktldi~ldLvssrNvedi--v----~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 320 MDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDI--V----QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHcCcccccHHHHHHHHHHhhhhhccHHHH--H----HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH
Confidence 3666777788888888888877776665432111 2 334456777766656666667777777777777778876
Q ss_pred HHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCccc
Q 000275 1253 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATK 1291 (1739)
Q Consensus 1253 Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~sk 1291 (1739)
|+..+|+|++-+||.++..-..|-..++..-..||.-|
T Consensus 394 -aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr 431 (948)
T KOG1058|consen 394 -AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR 431 (948)
T ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH
Confidence 66778999999999988888877777777777777544
No 124
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.79 E-value=3.2e+02 Score=36.65 Aligned_cols=326 Identities=17% Similarity=0.209 Sum_probs=183.4
Q ss_pred hhhhccChHHHHHHHHHHHHhhhcCCCCCCC-hhHHHHHHHHHhccccHHHHHHHHHHHHHHHH-HhcccccchhhhhHH
Q 000275 292 EGVKATKWSERKDAVAELTKLASTKRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-GLRTHFSGSSRFLLP 369 (1739)
Q Consensus 292 ~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~d-y~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~-gLr~~F~~y~~~~lp 369 (1739)
+-+++.|+.|+.=+-=-+.-|+... .| ...++..+++=|.-.|-.-|.+|++||+.+.. -|+..|..-+.
T Consensus 81 ~LLss~kysEKqIGYl~is~L~n~n----~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~---- 152 (938)
T KOG1077|consen 81 NLLSSNKYSEKQIGYLFISLLLNEN----SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIP---- 152 (938)
T ss_pred HHhhcCCccHHHHhHHHHHHHHhcc----hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhH----
Confidence 3467788888765544444444322 22 23445677888888888999999999999864 35566655433
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHhc--CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhH
Q 000275 370 VLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1739)
Q Consensus 370 ~lLeklKEKK~~V~eA~~~aLda~~~~~--~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~ 447 (1739)
- |=.-++.-..|+..+.=||-.++... -+..+++.+.|..-|++.--.|-..+..++.-...+.++ .. +.++
T Consensus 153 K-lLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~-~y----k~~~ 226 (938)
T KOG1077|consen 153 K-LLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE-SY----KTCL 226 (938)
T ss_pred H-HHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCH-HH----hhhH
Confidence 2 22457888889998888999998861 133446667777777766655555566665544433322 21 3333
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHh-----------------h----cCCHHHHHHHHHHHhcCCCC
Q 000275 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI-----------------E----KLDDVRRNKLSEMIAGSGGD 506 (1739)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l-----------------~----~Ld~~kk~KI~e~~~~~~~~ 506 (1739)
|.+++-| ..+....|.. +..|+ . -=|+..|+.+.|+++.
T Consensus 227 ~~avs~L---------------~riv~~~~t~-~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~---- 286 (938)
T KOG1077|consen 227 PLAVSRL---------------SRIVVVVGTS-LQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLER---- 286 (938)
T ss_pred HHHHHHH---------------HHHHhhcccc-hhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHH----
Confidence 3333221 1122222321 11111 0 0011222222222111
Q ss_pred CCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 000275 507 VATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP 586 (1739)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~ 586 (1739)
T Consensus 287 -------------------------------------------------------------------------------- 286 (938)
T KOG1077|consen 287 -------------------------------------------------------------------------------- 286 (938)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcC---CCccchHHHHHHH
Q 000275 587 SEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLP---GWSEKNVQVQQQV 663 (1739)
Q Consensus 587 ~~~s~ee~e~~~~~l~~~~i~~~L~~~~WK~Rl~a~e~l~~~v~~~~~~~~~~~~Lvr~l~~~P---gwkesNfqV~~~~ 663 (1739)
.+... .+- -.+++-..+.+-=--|.+.+.-.-..|.+.+++.|.....- .-+|+|..-+ .
T Consensus 287 ----------iLnk~-~~~----~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYL--a 349 (938)
T KOG1077|consen 287 ----------ILNKA-QEP----PKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYL--A 349 (938)
T ss_pred ----------HHhcc-ccC----ccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhh--h
Confidence 00000 000 02222233333222333444443334445555555543322 2378887654 5
Q ss_pred HHHHHHHHHhcCCCCccch----hhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHH
Q 000275 664 IEVINYLAATATKFPKKCV----VLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGI 739 (1739)
Q Consensus 664 leil~~la~~~~~fs~~~~----~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l 739 (1739)
||-...++. +.|+-..+ ..++..+= ---|+-+|..|-++|-++|......-++++++.++ .+-.+-+++|-.
T Consensus 350 LEsm~~L~s--s~~s~davK~h~d~Ii~sLk-terDvSirrravDLLY~mcD~~Nak~IV~elLqYL-~tAd~sireeiv 425 (938)
T KOG1077|consen 350 LESMCKLAS--SEFSIDAVKKHQDTIINSLK-TERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYL-ETADYSIREEIV 425 (938)
T ss_pred HHHHHHHHh--ccchHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHH-hhcchHHHHHHH
Confidence 777777776 36664433 33443332 02377889999999999999999999999999996 678888998887
Q ss_pred HHHHHHHHHhccC
Q 000275 740 LWMVSAVEDFGVS 752 (1739)
Q Consensus 740 ~wl~~~i~eFG~~ 752 (1739)
.-++=+-+.|..+
T Consensus 426 lKvAILaEKyAtD 438 (938)
T KOG1077|consen 426 LKVAILAEKYATD 438 (938)
T ss_pred HHHHHHHHHhcCC
Confidence 7777666777654
No 125
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=73.18 E-value=17 Score=38.41 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=53.2
Q ss_pred CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhh--hhHHHHHhhh--------CCCCHHHHHHHHHH
Q 000275 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK--DYVPICMECL--------NDGTPEVRDAAFSV 468 (1739)
Q Consensus 399 ~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k--~~~~~l~k~l--------~Ds~~~VR~aa~~~ 468 (1739)
.++.+++|.+..-|++|.|.||.-+|..|..|..+.+......+.+ .++..+...- +|....||++|.++
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 3466788889999999999999999999999888765333222211 2333333221 56678999999999
Q ss_pred HHHHH
Q 000275 469 LAAIA 473 (1739)
Q Consensus 469 l~~l~ 473 (1739)
+..|.
T Consensus 114 ~~~if 118 (122)
T cd03572 114 IKAIF 118 (122)
T ss_pred HHHHh
Confidence 98875
No 126
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.77 E-value=8.7 Score=50.25 Aligned_cols=92 Identities=25% Similarity=0.289 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCChh-hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCC
Q 000275 379 KPTVAESLTQTLQAMHKAGCLNLV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1739)
Q Consensus 379 K~~V~eA~~~aLda~~~~~~~~l~-~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1739)
-+++.+ +.=||+-+....+-.|. |+..||.+-|.|-.|-+|.-+...+.|.|-+.|.+ ++.+.|-+..-|+|+
T Consensus 120 S~n~ye-~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~FprL~EkLeDp 193 (877)
T KOG1059|consen 120 SSNVYE-VGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCFPRLVEKLEDP 193 (877)
T ss_pred cCccch-hhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhHHHHHHhccCC
Confidence 344444 33455555433112233 78899999999999999999999999999877543 378889999999999
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q 000275 458 TPEVRDAAFSVLAAIAKSV 476 (1739)
Q Consensus 458 ~~~VR~aa~~~l~~l~k~~ 476 (1739)
+|.|-.||...+..+.+.-
T Consensus 194 Dp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 194 DPSVVSAAVSVICELARKN 212 (877)
T ss_pred CchHHHHHHHHHHHHHhhC
Confidence 9999999999998887753
No 127
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=72.75 E-value=46 Score=40.26 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=87.8
Q ss_pred HHHHHHHHhcccccchhh--hhHHHHH-HHhccCCHHHHHHHHHHHHHHHHhcCCChh-hhHHHHHHHhhcCCchhHHHH
Q 000275 348 AIGNLARGLRTHFSGSSR--FLLPVLL-EKLKEKKPTVAESLTQTLQAMHKAGCLNLV-DVVEDVKTSVKNKVPLVRSLT 423 (1739)
Q Consensus 348 ~l~~lA~gLr~~F~~y~~--~~lp~lL-eklKEKK~~V~eA~~~aLda~~~~~~~~l~-~~~e~i~~al~~KnP~vk~et 423 (1739)
+++.+-+-....+.++.. .++..++ --++-.-+.||+.+..||-..+-. ...+. +.+.-+...++...+.+|..+
T Consensus 6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll-d~~~a~~~l~l~~~~~~~~~~~v~~~a 84 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLL-DKELAKEHLPLFLQALQKDDEEVKITA 84 (298)
T ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 334444444445555433 6666555 556677789999999999877654 11111 233445566666689999999
Q ss_pred HHHHHHHHhhCChhHHHHh--------hhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000275 424 LNWVTFCIETSSKAAVLKV--------HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1739)
Q Consensus 424 ~~~l~r~l~~~~~~~~~~~--------~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~ 475 (1739)
++-+...+-.++...+... ...+...+.+.+++.++++|..|+++++.++-.
T Consensus 85 l~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 85 LKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999987654433222 246888999999999999999999999998843
No 128
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=72.32 E-value=11 Score=49.55 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=90.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----hhhhHHHHHHH
Q 000275 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LVDVVEDVKTS 411 (1739)
Q Consensus 336 DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~----l~~~~e~i~~a 411 (1739)
|+...+++..+++...+..+ .|...++|.++.-|+-.=..||=-+..=++....+ ++ .+.+...+..+
T Consensus 306 ~a~~~~ltpl~k~~k~ld~~------eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G 377 (690)
T KOG1243|consen 306 DAASDFLTPLFKLGKDLDEE------EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALG 377 (690)
T ss_pred ccchhhhhHHHHhhhhcccc------ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhh
Confidence 66677777777766666554 38888999999999999999999999999988886 55 33466788889
Q ss_pred hhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000275 412 VKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1739)
Q Consensus 412 l~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~ 475 (1739)
+...||.+|.+|++.+.-.....++..++ -.++..+.+.-.|.++++|....-|||.+--+
T Consensus 378 ~~DTn~~Lre~Tlksm~~La~kL~~~~Ln---~Ellr~~ar~q~d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 378 FLDTNATLREQTLKSMAVLAPKLSKRNLN---GELLRYLARLQPDEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred cccCCHHHHHHHHHHHHHHHhhhchhhhc---HHHHHHHHhhCccccCcccccceeeecccccc
Confidence 99999999999999998777665544443 22334444444455555555555554444433
No 129
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=71.54 E-value=44 Score=41.11 Aligned_cols=85 Identities=24% Similarity=0.238 Sum_probs=60.4
Q ss_pred cchHHHHhhhc-chhhHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHH----h--
Q 000275 894 GELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA----A-- 966 (1739)
Q Consensus 894 geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~----~-- 966 (1739)
..+...|-.-+ +|+|-......+..++.-...++..+ .+.++..+.+.|+|+|+++|.+-+.++-..+. .
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~---~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL---PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC---CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 56677777766 78999888888777777776663222 35567778889999999999999998887764 1
Q ss_pred -cchhhhhHHHHHHHh
Q 000275 967 -VHLDKMVPYVTTALT 981 (1739)
Q Consensus 967 -~gl~~~~~~i~~~L~ 981 (1739)
.-...+++.+.+.++
T Consensus 98 ~~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLK 113 (339)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 123455555555553
No 130
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=70.08 E-value=31 Score=45.39 Aligned_cols=194 Identities=17% Similarity=0.198 Sum_probs=124.6
Q ss_pred cccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcCh
Q 000275 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (1739)
Q Consensus 849 DIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~ 928 (1739)
|+...+=--++...++++-++|.--+.-+..++++ |.-|-...+.-|..+|-.|+.|--++|-.+|+-++..+-..=+-
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 44454445667888999999999999999999974 57777777788888999999999999999999999888652222
Q ss_pred hhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCc
Q 000275 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (1739)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~~~~ 1008 (1739)
+=.+ +..++-.+++ .|.-+-||.||+.++.-=- .-+|.|.+-=.+- +...|.=+..-+..++ ..+ ..
T Consensus 160 ee~~-v~n~l~~liq--nDpS~EVRRaaLsnI~vdn------sTlp~IveRarDV--~~anRrlvY~r~lpki-d~r-~l 226 (892)
T KOG2025|consen 160 EECP-VVNLLKDLIQ--NDPSDEVRRAALSNISVDN------STLPCIVERARDV--SGANRRLVYERCLPKI-DLR-SL 226 (892)
T ss_pred Cccc-HHHHHHHHHh--cCCcHHHHHHHHHhhccCc------ccchhHHHHhhhh--hHHHHHHHHHHhhhhh-hhh-hh
Confidence 2222 2333333433 6889999999988764221 1223333322221 1223555544443333 111 11
Q ss_pred chhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccC
Q 000275 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 1056 (1739)
Q Consensus 1009 ~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk 1056 (1739)
.....+.-+=-+|+||.-+||.+++.++..=+-....-.+...+..|+
T Consensus 227 si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ld 274 (892)
T KOG2025|consen 227 SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLD 274 (892)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhc
Confidence 223344445558999999999999998875333344444555666666
No 131
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=69.97 E-value=30 Score=34.68 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=64.9
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHH
Q 000275 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (1739)
Q Consensus 405 ~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~ 484 (1739)
++.+...+.+..|.+|.+.+.-|.+.+.+.. .. ......++..+...+.|.++-|==+|..+|+++......+.+..+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~-~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EP-VIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cc-hhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 4455566678889999999999999998765 11 112366888999999999999999999999999999988777665
Q ss_pred hhc
Q 000275 485 IEK 487 (1739)
Q Consensus 485 l~~ 487 (1739)
++.
T Consensus 83 ~~~ 85 (92)
T PF10363_consen 83 LDE 85 (92)
T ss_pred HHH
Confidence 543
No 132
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=69.31 E-value=23 Score=49.24 Aligned_cols=171 Identities=15% Similarity=0.099 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCCCccchH---HHHhhhc---chhhHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHH
Q 000275 868 KVRLESIEAVNKILEEANKRIQPAGTGELF---GGLRGRL---YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 941 (1739)
Q Consensus 868 K~RkEaLe~v~~il~~ankrI~p~~~geL~---~aLk~Rl---~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~i 941 (1739)
=+|.-|.-.++-+.. .+.+.+...++ ..|-.-| .|+|- .-...+.....++.-||..+.+ .-..+|.+
T Consensus 748 ~errgael~L~~l~~----~fg~sl~~klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l 821 (1549)
T KOG0392|consen 748 FERRGAELFLKILSK----MFGGSLAAKLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRL 821 (1549)
T ss_pred HHhhhHHHHHHHHHH----HhhHHHHHhcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHH
Confidence 457666666665553 33333322222 2232233 24442 4556677777888899988888 77789999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHhcchhhh---hHHHHHHHh-cccCCcchHHHHHHHHHHHhccCCC--Ccchhh-hh
Q 000275 942 LKCLGDNKKHMRECTLTVLDAWLAAVHLDKM---VPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAH-LL 1014 (1739)
Q Consensus 942 l~~l~D~K~~vR~aa~~alda~~~~~gl~~~---~~~i~~~L~-~~~~~p~~r~e~l~wl~~~l~~~~~--~~~~~~-~~ 1014 (1739)
+.++.-.-..+|.++..|+..++.....+.+ ++.+...|. ..+. .|++...-+-.+|...-. ...+.. ++
T Consensus 822 ~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~---~~r~~a~e~~~~l~~~l~~~l~~~~~Llv 898 (1549)
T KOG0392|consen 822 FFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKF---VRRQGADELIELLDAVLMVGLVPYNPLLV 898 (1549)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhH---hhhhhHHHHHHHHHHhhcccccccceeeh
Confidence 9999999999999999999999877654433 333333333 1121 233333333333333221 222333 56
Q ss_pred hHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHH
Q 000275 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQET 1047 (1739)
Q Consensus 1015 ~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~ 1047 (1739)
+|++-|+.|-...||.+|..+...++..++.+.
T Consensus 899 ~pllr~msd~~d~vR~aat~~fa~lip~~~le~ 931 (1549)
T KOG0392|consen 899 VPLLRRMSDQIDSVREAATKVFAKLIPLLPLEA 931 (1549)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhccccccc
Confidence 779999999999999999999999999988775
No 133
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=66.71 E-value=5.4e+02 Score=36.35 Aligned_cols=253 Identities=17% Similarity=0.185 Sum_probs=123.8
Q ss_pred cchhhhHHHHHHHHHHHh---hchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCc
Q 000275 695 DIKTRAHAMKCLTTFSEA---VGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSS 771 (1739)
Q Consensus 695 D~K~r~~a~e~L~~~aE~---~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~~~k~~~l~~s 771 (1739)
|.|.|+.+..+|..+.+. ...++++..+++. ...+++-.+..+..-+++.+-.+-. +. +++......
T Consensus 557 d~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~-~ls~~~~~r~g~~la~~ev~~~~~~--l~--~~~~~l~e~----- 626 (1133)
T KOG1943|consen 557 DVKIRELAAYALHKLSLTEPKYLADYVLPPLLDS-TLSKDASMRHGVFLAAGEVIGALRK--LE--PVIKGLDEN----- 626 (1133)
T ss_pred cHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhh-hcCCChHHhhhhHHHHHHHHHHhhh--hh--hhhhhhHHH-----
Confidence 478899999998887764 3444566666665 4678888888888777776643321 11 233222111
Q ss_pred cHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCCccccc
Q 000275 772 AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDIS 851 (1739)
Q Consensus 772 N~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs 851 (1739)
--+-+..=+..+...|.|=|..-.++ .+..+-|+.=+..- . ..++-.+|+
T Consensus 627 ~i~~l~~ii~~~~~~~~~rg~~~lmr-----~~~~~~Ie~~s~s~----~---------------------~~~~~~v~e 676 (1133)
T KOG1943|consen 627 RIAGLLSIIPPICDRYFYRGQGTLMR-----QATLKFIEQLSLSK----D---------------------RLFQDFVIE 676 (1133)
T ss_pred HhhhhhhhccHHHHHHhccchHHHHH-----HHHHHHHHHhhhcc----c---------------------hhHHHHHHH
Confidence 00111122344445555444220000 11122222111100 0 001111111
Q ss_pred ccCcHHHH-hhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCc-cc-hHHHHhhhc-chhhHhHHHHHHHHHHHHHHhcC
Q 000275 852 GKFTPTLV-KSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GE-LFGGLRGRL-YDSNKNLVMATLITLGAVASAMG 927 (1739)
Q Consensus 852 ~kit~~l~-~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~-ge-L~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG 927 (1739)
. ...++ ..+.+.| .+|.+|.+++..++.. ....+.+ ++ ++.-.-.++ ++++..+.+--.-++|.+-.-|
T Consensus 677 ~--~~~ll~~~l~~~n-~i~~~av~av~~l~s~---y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~- 749 (1133)
T KOG1943|consen 677 N--WQMLLAQNLTLPN-QIRDAAVSAVSDLVST---YVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSEL- 749 (1133)
T ss_pred H--HHHHHHHhhcchH-HHHHHHHHHHHHHHHH---HHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHh-
Confidence 1 01122 2235677 9999999999999973 4444441 22 444444444 5667766654433333332111
Q ss_pred hhhH-hhhhhhhHHHHHHhc-cCchhHHHHHHHHHHHHHHhcc-------hhhhhHHHHHHHhcccCCcchHHHHHHHHH
Q 000275 928 PAVE-KSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (1739)
Q Consensus 928 ~~~~-k~~k~l~~~il~~l~-D~K~~vR~aa~~alda~~~~~g-------l~~~~~~i~~~L~~~~~~p~~r~e~l~wl~ 998 (1739)
+. ++-..+...++..+- |--+.-|...+.+++......+ ..++++.+..+|.+= +...|-++-.|+.
T Consensus 750 --i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddY--ttd~rGDVGswVR 825 (1133)
T KOG1943|consen 750 --IHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDY--TTDSRGDVGSWVR 825 (1133)
T ss_pred --hchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc--ccccCccHHHHHH
Confidence 11 111122333333332 2256678888888888877766 456666677777631 2223445555543
No 134
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=65.89 E-value=4.2e+02 Score=34.78 Aligned_cols=115 Identities=15% Similarity=0.218 Sum_probs=83.2
Q ss_pred ccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhh---HHHHHHHhhcC--CchhHHHHHHHHHHHHh
Q 000275 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV---VEDVKTSVKNK--VPLVRSLTLNWVTFCIE 432 (1739)
Q Consensus 358 ~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~---~e~i~~al~~K--nP~vk~et~~~l~r~l~ 432 (1739)
..|.+-...++|++|.|+.-.-..||..+.+.|.-+-.. .-+...| ++.++.-.++. ++.||-=++.|+...+.
T Consensus 15 ~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~R-ik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 15 EKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKR-IKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-hccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 357888899999999999999999999999999888775 2232222 46666655544 49999999999999999
Q ss_pred hCChhHHHHhhhhhHHHHHhhhCCCCH---HHHHHHHHHHHHHHHHhC
Q 000275 433 TSSKAAVLKVHKDYVPICMECLNDGTP---EVRDAAFSVLAAIAKSVG 477 (1739)
Q Consensus 433 ~~~~~~~~~~~k~~~~~l~k~l~Ds~~---~VR~aa~~~l~~l~k~~G 477 (1739)
..+...- ..++|.+++++..... ++.......+..+.++..
T Consensus 94 Rl~~~e~----~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~ 137 (501)
T PF13001_consen 94 RLDDEER----RELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLP 137 (501)
T ss_pred cCCHHHH----HHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCC
Confidence 8876554 6789999999975443 333333334444445443
No 135
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=65.08 E-value=19 Score=40.72 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=67.4
Q ss_pred cchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHH
Q 000275 1290 TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1369 (1739)
Q Consensus 1290 skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k~ 1369 (1739)
.+.++.+++-.-+.|...|.-+++.++.+ -+.|+. .|..++|.+-.+.+|.|+.+|+-|...+...
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~i-l~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l----------- 72 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELI-LRQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKEL----------- 72 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HhcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHH-----------
Confidence 56788899988999999999999999885 568984 5666889999999999999999999988844
Q ss_pred hccCCHHHHhhHHHHHHHh
Q 000275 1370 VGKLTDAQKSMLDDRFKWK 1388 (1739)
Q Consensus 1370 ~g~ls~k~~s~Leer~kr~ 1388 (1739)
-+|--+|++-|+-..
T Consensus 73 ----~eK~~s~v~~~~~~g 87 (187)
T PF12830_consen 73 ----HEKHESLVESRYSEG 87 (187)
T ss_pred ----HHHhHHHHHHHHHHH
Confidence 466667777777654
No 136
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.14 E-value=1.9e+02 Score=39.11 Aligned_cols=209 Identities=13% Similarity=0.131 Sum_probs=126.1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhhHhhhhh
Q 000275 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1739)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1739)
+.-+-+...+=-+||-|+-....++. .-|+...-+..+-+++|.|.+--|...++.+|..+.+- ++..-.|-|-
T Consensus 146 eVe~Ll~~~~~~irKKA~Lca~r~ir-----K~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr~ 219 (866)
T KOG1062|consen 146 EVERLLQHRDPYIRKKAALCAVRFIR-----KVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI-SPDALSYFRD 219 (866)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHH-----cCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc-CHHHHHHHHH
Confidence 34444566777889988888877774 44665444556778888888888888888777777654 1111112222
Q ss_pred hhH---------------------------------HHHHHhccCchhHHHHHHHHHHHHHHhc------chhhhhHHHH
Q 000275 937 VLS---------------------------------DILKCLGDNKKHMRECTLTVLDAWLAAV------HLDKMVPYVT 977 (1739)
Q Consensus 937 l~~---------------------------------~il~~l~D~K~~vR~aa~~alda~~~~~------gl~~~~~~i~ 977 (1739)
+++ .+|..||-+-+..-++.-.-|...+..| |-.-++|.+-
T Consensus 220 l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~ 299 (866)
T KOG1062|consen 220 LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVR 299 (866)
T ss_pred HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence 333 3344566665555555555555555543 4444555554
Q ss_pred HHHhcccCCcchHHHHHHHHHHHhccCCCC--------------cchhhhhh---HHhhhcCCCCHHHHHHHHHHHHHHH
Q 000275 978 TALTDAKLGAEGRKDLFDWLSKQLTGLSGF--------------PDAAHLLK---PASIAMTDKSSDVRKAAEACIVEIL 1040 (1739)
Q Consensus 978 ~~L~~~~~~p~~r~e~l~wl~~~l~~~~~~--------------~~~~~~~~---p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1739)
+-+.- ..|+.+|--...-|.+.|.+-... .+....-. .|+.||+|.+.-+|+.|-+++-.++
T Consensus 300 TI~~I-~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lv 378 (866)
T KOG1062|consen 300 TIMDI-RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALV 378 (866)
T ss_pred HHHhc-cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 44441 124667888888888777654331 11111111 2777999999999999999988776
Q ss_pred HhcCHHHHHHH----hhccCchhH----HHHHHHHHhccC
Q 000275 1041 RAGGQETIEKN----LKDIQGPAL----ALILERIKLNGA 1072 (1739)
Q Consensus 1041 ~~~G~~~~~~~----~~~Lk~~~~----~~i~~~l~ka~~ 1072 (1739)
..---..|.+. +...++..| ..|.+..|++.|
T Consensus 379 n~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 379 NESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 65555554443 344444444 456677777764
No 137
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.19 E-value=81 Score=39.46 Aligned_cols=112 Identities=15% Similarity=0.255 Sum_probs=80.8
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-----hh
Q 000275 328 RTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-----LV 402 (1739)
Q Consensus 328 ~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~-----l~ 402 (1739)
..|...++.-|++|-..|+.-+..+-+.--..-..|...+++.+.+.+-|.=..||++.-..++.+.-..|-. ..
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~ 140 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVS 140 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHH
Confidence 3334444566666666666666666555222233467788899999999999999999999999865432311 11
Q ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000275 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1739)
Q Consensus 403 ~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~ 439 (1739)
-++..+..||.|-.|.+|...+.||...+..+++...
T Consensus 141 l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 141 LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 2456788899999999999999999999998876543
No 138
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=63.17 E-value=44 Score=36.59 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=64.8
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcc--cCCCCCCccchHHHHhhhc-ch-------hhH--hHHHHHHHHHHHHHH
Q 000275 857 TLVKSLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRL-YD-------SNK--NLVMATLITLGAVAS 924 (1739)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~an--krI~p~~~geL~~aLk~Rl-~D-------sNk--~lv~~al~ii~~lA~ 924 (1739)
+++..+++.+=|+|+.|||.+..|+.... ..+....+..++.+|-.-+ .+ .+. .-+..+.+-++..|.
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 46788999999999999999999997432 5566666788888886544 11 111 111122344444444
Q ss_pred hcC-------hhhH-hhhhhhhHHHHHHhccCc-hhHHHHHHHHHHHH
Q 000275 925 AMG-------PAVE-KSSKGVLSDILKCLGDNK-KHMRECTLTVLDAW 963 (1739)
Q Consensus 925 amG-------~~~~-k~~k~l~~~il~~l~D~K-~~vR~aa~~alda~ 963 (1739)
+++ +.+. +.++.++..|.+.|.+.- ..+.-.+...+-+.
T Consensus 88 ~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L 135 (155)
T PF11640_consen 88 ALRLFVEKSNSRLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKIL 135 (155)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 443 2332 456677777777777776 33333333333333
No 139
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.98 E-value=1.1e+02 Score=44.11 Aligned_cols=188 Identities=17% Similarity=0.178 Sum_probs=131.3
Q ss_pred hhhhhccChHHHHHHHHHHHHhhhcCCCC--CCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhH
Q 000275 291 WEGVKATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1739)
Q Consensus 291 ~~~l~s~KWkeRkEaLe~l~~l~~~pKi~--~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~l 368 (1739)
..++.=+.=+.|.-||.+|..++++---. .+=|......+++++.|-+..|-..+.+.+..+-+++++.-+||.+.++
T Consensus 47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li 126 (1312)
T KOG0803|consen 47 VKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLI 126 (1312)
T ss_pred HHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 33444455577888999999887533322 2348889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhc--------C-----------------CChhhhHHHHHHHhhcCCchhHHHH
Q 000275 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAG--------C-----------------LNLVDVVEDVKTSVKNKVPLVRSLT 423 (1739)
Q Consensus 369 p~lLeklKEKK~~V~eA~~~aLda~~~~~--------~-----------------~~l~~~~e~i~~al~~KnP~vk~et 423 (1739)
|+.+--.=|-=..|-.|+-+.....+... | -+++|.--.-.+.++.|.+.+..+.
T Consensus 127 ~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ss 206 (1312)
T KOG0803|consen 127 PPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSS 206 (1312)
T ss_pred hhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHH
Confidence 99987776666666666555543322110 0 1122211122356678889999999
Q ss_pred HHHHHHHHhhCChh-HHH---Hhhhhh--HHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000275 424 LNWVTFCIETSSKA-AVL---KVHKDY--VPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1739)
Q Consensus 424 ~~~l~r~l~~~~~~-~~~---~~~k~~--~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge 478 (1739)
+.-+.+.+...... .+. .-.|.+ ...+-+.+.+.+|.||.+..+++-.+.+-+=.
T Consensus 207 Ll~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~ 267 (1312)
T KOG0803|consen 207 LLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILN 267 (1312)
T ss_pred HHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHH
Confidence 99888888543221 111 111222 23466889999999999999998887765543
No 140
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=62.22 E-value=31 Score=34.62 Aligned_cols=77 Identities=19% Similarity=0.156 Sum_probs=60.9
Q ss_pred hHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHH
Q 000275 1292 TLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWR 1368 (1739)
Q Consensus 1292 vf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k 1368 (1739)
.|.-.++-+.+...-.|++.|..|.++|++.-..+....+.+...-.++.|.|+=|==+|+++++++-...++.+..
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~ 80 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLP 80 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHH
Confidence 34445555566667789999999999999988334334566789999999999999999999999998888876653
No 141
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=61.72 E-value=41 Score=41.94 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHhc---CCCCccchhhhc----cchhhccccch-----hhhHHHHHHHHHHHhhchHhHHHHHHHh
Q 000275 658 QVQQQVIEVINYLAATA---TKFPKKCVVLCL----LGISERVADIK-----TRAHAMKCLTTFSEAVGPGFIFERLYKI 725 (1739)
Q Consensus 658 qV~~~~leil~~la~~~---~~fs~~~~~~~l----~~lveKlgD~K-----~r~~a~e~L~~~aE~~~~~~V~~~l~~~ 725 (1739)
.+.++.|+.+..+.... ..|++-.-+.|+ +.+.-.-||.- +-....+.|-.+-|.-..+.|-+.+..+
T Consensus 454 ekfqasfelikciiahlikehkfskledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqf 533 (666)
T KOG4825|consen 454 EKFQASFELIKCIIAHLIKEHKFSKLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQF 533 (666)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhh
Confidence 45556666665554332 346654444433 33334456632 3344567788888999999999999998
Q ss_pred hhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhc---CCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcch
Q 000275 726 MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTG---LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802 (1739)
Q Consensus 726 ~~~~KnPKv~~e~l~wl~~~i~eFG~~~l~~K~li~~~k~~~---l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlk 802 (1739)
+..+|.|-+--.--.-+.+.+.+.|-..-- -+++.+++-| +.+.=-.+|.+|....+.||+- +..|...+|+.
T Consensus 534 ldanklphiAkSqggkLarllkdlgkGrag--fiediakkfgVpaeehglndkreaafaiicdmtrd--hQarsIgedLm 609 (666)
T KOG4825|consen 534 LDANKLPHIAKSQGGKLARLLKDLGKGRAG--FIEDIAKKFGVPAEEHGLNDKREAAFAIICDMTRD--HQARSIGEDLM 609 (666)
T ss_pred cccCcchHHHHHHhHHHHHHHHhcCCCccc--hhHHHHHHhCCCccccchhHHHHhHhhhhhhhccc--HHHHHHHhhcC
Confidence 888999887666666677777777753211 1222233211 3344446999999999999973 33334344443
Q ss_pred H--------HHHHHHHHHHhcCCCCCCCC
Q 000275 803 P--------ALLSALDAEYEKNPFEGTVV 823 (1739)
Q Consensus 803 p--------all~~ie~EF~K~~~~~~p~ 823 (1739)
| -+...+-+.|+|..|...++
T Consensus 610 pddskngriilvksefEgFAkiDgranda 638 (666)
T KOG4825|consen 610 PDDSKNGRIILVKSEFEGFAKIDGRANDA 638 (666)
T ss_pred cccccCCceEEeHHHhhhhhhccCCCChH
Confidence 3 35566777788886644444
No 142
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=61.45 E-value=70 Score=40.12 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=41.2
Q ss_pred cCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHH
Q 000275 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1739)
Q Consensus 414 ~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l 469 (1739)
++.|-+|..+++|+...-...++..+ ..++|.++.+|.+++.-|+--|+-|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~l----~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQL----LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHHH----HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHHH----HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 78899999999999976666666544 67899999999999999999998775
No 143
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=60.80 E-value=58 Score=43.19 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=66.2
Q ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHH
Q 000275 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482 (1739)
Q Consensus 403 ~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~ 482 (1739)
.+++-|+.-++.---++|.-.|..+-..+...++..+. +.+.|.+..++.|+++.+|+....+|..+.-.+|++.++
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~---d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILN---DQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhc---chhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 36667777777788899999999999888888776653 678999999999999999999999999999999998544
No 144
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=60.34 E-value=1e+02 Score=40.10 Aligned_cols=196 Identities=18% Similarity=0.124 Sum_probs=130.7
Q ss_pred hhhhhccChHHHHHHHHHHHHhhhcCC-CCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHH
Q 000275 291 WEGVKATKWSERKDAVAELTKLASTKR-IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (1739)
Q Consensus 291 ~~~l~s~KWkeRkEaLe~l~~l~~~pK-i~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp 369 (1739)
...++|+.-+.|+-.|+-|.-+.++-| |...=|.-|...|-+++-|--..|-..|..|+..+- +|-.+=......++-
T Consensus 97 lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q-e~~~neen~~~n~l~ 175 (885)
T COG5218 97 LRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ-EMELNEENRIVNLLK 175 (885)
T ss_pred HhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccCChHHHHHHHHH
Confidence 446789999999999998887777555 333458889999999999999999999999999887 554443444444444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHH
Q 000275 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1739)
Q Consensus 370 ~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~ 449 (1739)
.++. -|.-..||.++ |-.+.-. ..+..-++|.--+ -+...| --+-.|||.....-....+-|.+. .
T Consensus 176 ~~vq--nDPS~EVRr~a---llni~vd-nsT~p~IlERarD----v~~anR---r~vY~r~Lp~iGd~~~lsi~kri~-l 241 (885)
T COG5218 176 DIVQ--NDPSDEVRRLA---LLNISVD-NSTYPCILERARD----VSGANR---RMVYERCLPRIGDLKSLSIDKRIL-L 241 (885)
T ss_pred HHHh--cCcHHHHHHHH---HHHeeeC-CCcchhHHHHhhh----hhHHHH---HHHHHHHhhhhcchhhccccceeh-h
Confidence 4443 35555666544 2222221 2345555554321 111122 136678887664433222223333 5
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHh
Q 000275 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1739)
Q Consensus 450 l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~Ld~~kk~KI~e~~~ 501 (1739)
+-.+|+|+.-+||.|+..+++.-...--+-.+..+++.||-.+++-....++
T Consensus 242 ~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik 293 (885)
T COG5218 242 MEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIK 293 (885)
T ss_pred hhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHH
Confidence 6689999999999999999999888877777888999999776664333333
No 145
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=60.07 E-value=58 Score=34.33 Aligned_cols=127 Identities=13% Similarity=0.204 Sum_probs=75.1
Q ss_pred CCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCC
Q 000275 320 PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399 (1739)
Q Consensus 320 ~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~ 399 (1739)
|.++.+++..+-..+.. |..-+...+.++..+.+-+.. |.+.- ...+++..+.+++...+..++..
T Consensus 21 P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~----~~~~~------~~~~r~~~l~~~l~~~~~~i~~~--- 86 (148)
T PF08389_consen 21 PQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD----FRRSS------LSQERRRELKDALRSNSPDILEI--- 86 (148)
T ss_dssp TTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT----SHCCH------SHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred hhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh----hhchh------hhHHHHHHHHHHHHHHHHHHHHH---
Confidence 44566667777666654 466666777777777776654 11110 11234445555555554444432
Q ss_pred ChhhhHHHHHHHhhcC-CchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHH
Q 000275 400 NLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1739)
Q Consensus 400 ~l~~~~e~i~~al~~K-nP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l 469 (1739)
+..+.....+. ++.+...++.-+..++.-.+...+. -..+++.++..+ ++++.|++|++||
T Consensus 87 -----l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~--~~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 87 -----LSQILSQSSSEANEELVKAALKCLKSWISWIPIELII--NSNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp -----HHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHH--SSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred -----HHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhc--cHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 22333222222 3788888888888888755544332 134889999999 5556699999987
No 146
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.55 E-value=44 Score=47.67 Aligned_cols=148 Identities=20% Similarity=0.215 Sum_probs=100.5
Q ss_pred HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCC
Q 000275 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (1739)
Q Consensus 757 K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~ 836 (1739)
-.+|.++..- |.+.|-.+|-.|++|+|-|..--+.-+ . +..
T Consensus 258 ~~vip~l~~e-L~se~~~~Rl~a~~lvg~~~~~~~~~l------------~------~~~-------------------- 298 (1266)
T KOG1525|consen 258 LAVIPQLEFE-LLSEQEEVRLKAVKLVGRMFSDKDSQL------------S------ETY-------------------- 298 (1266)
T ss_pred HHHHHHHHHH-HhcchHHHHHHHHHHHHHHHhcchhhh------------c------ccc--------------------
Confidence 4677788776 999999999999999999874211100 0 000
Q ss_pred CCCCCCCCCCcccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHH
Q 000275 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916 (1739)
Q Consensus 837 ~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al 916 (1739)
+-+=..|+..+.|..--+|-|.++-.-.++- +|+-|.-+ -.+.-+|+-|..|=+.++-++++
T Consensus 299 ---------------~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~-~~~~~~~~--~~~~~~l~~~~~D~~~rir~~v~ 360 (1266)
T KOG1525|consen 299 ---------------DDLWSAFLGRFNDISVEVRMECVESIKQCLL-NNPSIAKA--STILLALRERDLDEDVRVRTQVV 360 (1266)
T ss_pred ---------------hHHHHHHHHHhccCChhhhhhHHHHhHHHHh-cCchhhhH--HHHHHHHHhhcCChhhhheeeEE
Confidence 0022468888999999999999999998885 34433333 23556777778888877765543
Q ss_pred HHHHHHHHhcChhhH-hhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHh
Q 000275 917 ITLGAVASAMGPAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1739)
Q Consensus 917 ~ii~~lA~amG~~~~-k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~ 966 (1739)
-.+..++ .|. .+...++--+.+++-|+|..||.-|+..|+.++..
T Consensus 361 i~~~~v~-----~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 361 IVACDVM-----KFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred EEEeehh-----HhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 2111111 111 23333666778899999999999999999998874
No 147
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=59.06 E-value=18 Score=48.73 Aligned_cols=122 Identities=22% Similarity=0.325 Sum_probs=93.5
Q ss_pred CCcccccccCc---HHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc--chhhHh-HHHHHHHH
Q 000275 845 LPREDISGKFT---PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKN-LVMATLIT 918 (1739)
Q Consensus 845 lprvDIs~kit---~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl--~DsNk~-lv~~al~i 918 (1739)
+|-.=|.+.++ |=++..++=++=-+|.+.++.+.-.+.++. -+++.-++-+++-|-.-= .|+|-. |--.||+|
T Consensus 898 vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~-tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqc 976 (1030)
T KOG1967|consen 898 VPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE-TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQC 976 (1030)
T ss_pred CCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc-ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHH
Confidence 44444444444 446778888999999999999999999884 455544577888775433 455534 44579999
Q ss_pred HHHHHHhcChh-hHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc
Q 000275 919 LGAVASAMGPA-VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (1739)
Q Consensus 919 i~~lA~amG~~-~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~ 967 (1739)
++.|.+-.-.+ .-.|..-++.+++.+|+|+|--||..|..|=..|+.-.
T Consensus 977 L~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 977 LNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred HHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence 99999977644 56788889999999999999999999999999997643
No 148
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=58.87 E-value=1.2e+02 Score=39.49 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=105.8
Q ss_pred hHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhH-HHHHHH-hcccC
Q 000275 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP-YVTTAL-TDAKL 985 (1739)
Q Consensus 908 Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~-~i~~~L-~~~~~ 985 (1739)
-|+|--..++|+..+..-.|.==+-...+++-.+.+++-|..+.||-.|.-||..+-+-.|-++... .+..++ .+. .
T Consensus 104 dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vqnD-P 182 (885)
T COG5218 104 DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQND-P 182 (885)
T ss_pred chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC-c
Confidence 3677778889999998888875566778899999999999999999999999999987777655433 333333 331 2
Q ss_pred CcchHHHHHHHHH--------------------------HHhccCCCC--cchhhhhhHHhhhcCCCCHHHHHHHHHHHH
Q 000275 986 GAEGRKDLFDWLS--------------------------KQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1739)
Q Consensus 986 ~p~~r~e~l~wl~--------------------------~~l~~~~~~--~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1739)
+.+.|.-++.-+. ++|+.+... ....+-+.-+--+|+||.-+||+++..++.
T Consensus 183 S~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 183 SDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred HHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhhhHHHHHHHHHH
Confidence 4667766654332 222222110 001111111222889999999999999988
Q ss_pred HHHHhcCHHHHHHHhhccCchhHHHHHHHHHhc
Q 000275 1038 EILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (1739)
Q Consensus 1038 ~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka 1070 (1739)
.-+..--.-.....+..|+-......+..+++.
T Consensus 263 ~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~ 295 (885)
T COG5218 263 SAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGV 295 (885)
T ss_pred HHhcccccccHHHHHHHHhhhhHHHHHHHHHHH
Confidence 766655554555566777755555545555444
No 149
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=58.49 E-value=9.6 Score=32.55 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=22.4
Q ss_pred hhhHHHHHhhhCCCCHHHHHHHHHHH
Q 000275 444 KDYVPICMECLNDGTPEVRDAAFSVL 469 (1739)
Q Consensus 444 k~~~~~l~k~l~Ds~~~VR~aa~~~l 469 (1739)
..+...+.+.+.|+++.||+||.+++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 35778889999999999999998764
No 150
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=57.89 E-value=15 Score=30.71 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=26.6
Q ss_pred hhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000275 445 DYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1739)
Q Consensus 445 ~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~ 473 (1739)
..+|.++++|.+.+++||+.|+.+|+-|.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 37999999999999999999999998774
No 151
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=57.85 E-value=1.1e+02 Score=34.68 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=83.2
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhh
Q 000275 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1739)
Q Consensus 365 ~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k 444 (1739)
..+++.+|+..-.....|+.++.+.+..+..+|-+++..+++-+..-..+.||.+|..+..-+....++++.-...++.+
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~ 86 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSE 86 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34688899999999999999999999999999889999999999988889999999999999998888775433322222
Q ss_pred hh---HHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000275 445 DY---VPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1739)
Q Consensus 445 ~~---~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~G 477 (1739)
.+ ...-..+-.|.....+......++.++.+++
T Consensus 87 gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 87 GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 11 1111223344444333336666777777666
No 152
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=55.82 E-value=48 Score=41.89 Aligned_cols=147 Identities=15% Similarity=0.235 Sum_probs=85.4
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH-h-------------cCCCccchHHHHHHHHHHHHHHHHhcC
Q 000275 610 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVC-M-------------LPGWSEKNVQVQQQVIEVINYLAATAT 675 (1739)
Q Consensus 610 L~~~~WK~Rl~a~e~l~~~v~~~~~~~~~~~~Lvr~l~-~-------------~PgwkesNfqV~~~~leil~~la~~~~ 675 (1739)
++|-.-|.|..|+--+...++..+. -++.-|+. - .-|.||+||..-.-.+++...+.+...
T Consensus 5 ~r~~~akvr~~al~~~~~~~~~~~~-----~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk 79 (728)
T KOG4535|consen 5 MRSYQAKVRQGALVCFLSTIKSIEK-----KVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSK 79 (728)
T ss_pred hhhHHHHHHhhHHHHHHHHHhhhhh-----hhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhH
Confidence 3455567788887777665555321 11222221 0 126799999988888888887776432
Q ss_pred CCCccchhhhccchhhccccchhh----h------HHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 000275 676 KFPKKCVVLCLLGISERVADIKTR----A------HAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSA 745 (1739)
Q Consensus 676 ~fs~~~~~~~l~~lveKlgD~K~r----~------~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~~ 745 (1739)
.|- ...+-+||.-.- . .+..+|..+-| ..-+|.+.-.|+.++...
T Consensus 80 ~fl---------s~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~----------------~e~~~~~~tq~~kcla~l 134 (728)
T KOG4535|consen 80 QFL---------SVAEDTSDHAFTPFSVMIACSIRELHRCLLLALV----------------AESSSQTVTQIIKCLANL 134 (728)
T ss_pred HHH---------HHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHH----------------HhcCchhHHHHHHHHHHH
Confidence 220 011122332110 1 12223333333 333455666666677777
Q ss_pred HHHhccCccchH---hHHHHHhhhcCCCccHHHHHHHHHHHHHHH
Q 000275 746 VEDFGVSHLKLK---DLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1739)
Q Consensus 746 i~eFG~~~l~~K---~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly 787 (1739)
+..--+..+.+. .+..++|+. +.|++|.||-++..++|.+-
T Consensus 135 v~~~p~~~l~~~~~~~~~~~ik~~-i~~~d~~v~vs~l~~~~~~v 178 (728)
T KOG4535|consen 135 VSNAPYDRLKLSLLTKVWNQIKPY-IRHKDVNVRVSSLTLLGAIV 178 (728)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHH-hhcCCCChhhHHHHHHHHHH
Confidence 765555555443 455668998 99999999999999988764
No 153
>PF05536 Neurochondrin: Neurochondrin
Probab=54.87 E-value=6.5e+02 Score=33.44 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCC
Q 000275 772 AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNP 817 (1739)
Q Consensus 772 N~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~ 817 (1739)
++.+...|..++..+....|...+.--...--.++..|-..|....
T Consensus 152 ~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~ 197 (543)
T PF05536_consen 152 QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH 197 (543)
T ss_pred CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc
Confidence 5677888999998887777755444222222345566677776553
No 154
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.86 E-value=76 Score=45.55 Aligned_cols=116 Identities=10% Similarity=0.123 Sum_probs=94.3
Q ss_pred cccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcCh
Q 000275 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (1739)
Q Consensus 849 DIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~ 928 (1739)
|+++. +..+++++..+|=+++.-||.++-.++++-|--.--+.++..+.-.++-..|-+.-|-.++-+++..+-+++++
T Consensus 38 ~~dse-l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk 116 (1312)
T KOG0803|consen 38 ELDSE-LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKK 116 (1312)
T ss_pred ccCHH-HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 34444 34568999999999999999999999975443322234567777778888999999999999999999999999
Q ss_pred hhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHH
Q 000275 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA 965 (1739)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~ 965 (1739)
...+|.|.++|.++...-|--..|-.+|-+.....+.
T Consensus 117 ~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 117 KLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 9999999999999999999888887777776654443
No 155
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.48 E-value=34 Score=42.60 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=90.2
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHhcChhh-Hhhh
Q 000275 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV-EKSS 934 (1739)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~amG~~~-~k~~ 934 (1739)
.+++.+++--|=|+|++||..+..++.. ++-+--.-+-+|++-+..++.|--..+-.-..+.+.-+...+++.- +.+.
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 4788999999999999999999999974 5555444457888889999988888877777788888888887765 6777
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000275 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1739)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1739)
..+++-+.......-+.+|.-+...++-.++.++
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 7778877777888888888888877777777765
No 156
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=54.15 E-value=39 Score=35.20 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=59.5
Q ss_pred cchHHHHHhhhc-cCChhhHhHHHHHHHHHHHhhcCcccCccch-HHHHHHHhccCChhHHHHHHHHHHHHHHHh-c---
Q 000275 1290 TKTLPYILEGLR-SKNNRTRIECVDLVGFLIDHHGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKIL-G--- 1363 (1739)
Q Consensus 1290 skvf~~l~~glk-sKN~r~R~Ecl~el~~li~~~G~~v~~~~Ka-l~~ia~~i~drD~~VR~AALn~l~~~y~~~-G--- 1363 (1739)
.++.|++.+|++ ++++-.|+.|.-.++.+-.+.-++- .-..+ ++.|++.....+. .+.||.||+..|... +
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~-~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~~~ 81 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD-EVLNALMESILKNWTQETV--QRQALICLIVLCQSQENVDS 81 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH-HHHHHHHHHHHhccccchh--HHHHHHHHHHHHHccccccc
Confidence 468899999999 9999999999999999987766642 11123 2566665544444 577999999998776 3
Q ss_pred --hhHHHHhccCCH
Q 000275 1364 --EDIWRYVGKLTD 1375 (1739)
Q Consensus 1364 --d~v~k~~g~ls~ 1375 (1739)
+++++.+-+++.
T Consensus 82 lp~~~~~~l~~~~~ 95 (121)
T PF12397_consen 82 LPRKVFKALLKLPD 95 (121)
T ss_pred CCHHHHHHHHcCcc
Confidence 236666666554
No 157
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.11 E-value=23 Score=48.13 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=58.8
Q ss_pred hhHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchhh
Q 000275 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK 971 (1739)
Q Consensus 907 sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~ 971 (1739)
||.-=+-.++.-||.+|..||..|..+.-..+-+++..+++.-..++..|..|+-+++.+|+++.
T Consensus 560 Snv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s 624 (1014)
T KOG4524|consen 560 SNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGS 624 (1014)
T ss_pred cchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 55555567888899999999999999999999999999999999999999999999999998744
No 158
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=52.98 E-value=1e+02 Score=39.98 Aligned_cols=110 Identities=15% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHcChhhhhhhHHHHHHHHHhhhcCChhhHHHHHHHHHHHHhhcchhhHHHHHHHHhhccCch--------------
Q 000275 78 AYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAK-------------- 143 (1739)
Q Consensus 78 ~~l~~a~~~~~~~~~~~~~~lveK~L~~r~~tk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K~PK-------------- 143 (1739)
.++..++..+.+..-+.+.-+++- .|.-|++|.|.++.|||=..-..+.=.++..+..--||
T Consensus 420 ~L~~eGg~eFK~~~Vdaisd~~~~----~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR 495 (898)
T COG5240 420 SLLQEGGLEFKKYMVDAISDAMEN----DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNR 495 (898)
T ss_pred HHHhcccchHHHHHHHHHHHHHhh----CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHH
Q ss_pred -------hHHHHHHHHHHHHHhhCC---CccChhHHHhhchhhhcccChhHHHHHHHHHHHH
Q 000275 144 -------AVVPAIDVMFQALSEFGA---KIIPPKRILKMLPELFDHQDQNVRASSKGLTLEL 195 (1739)
Q Consensus 144 -------vv~a~i~~l~~~l~~FG~---k~v~~K~ilk~l~~lf~~~dk~VR~ea~~L~vel 195 (1739)
|.++|+.+| ..||. .++.+..+.-.|+..++++|-.||+-|.-++-.|
T Consensus 496 ~iLEN~ivRsaAv~aL----skf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 496 LILENNIVRSAAVQAL----SKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHhhhHHHHHHHHHH----HHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
No 159
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=52.80 E-value=29 Score=38.49 Aligned_cols=88 Identities=20% Similarity=0.322 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHHHHhhchHhHHHHHHHhhhh----cCChhhHHHHHHHHHHHHH-HhccC-ccchHhHHHHHhhhcCCCc
Q 000275 698 TRAHAMKCLTTFSEAVGPGFIFERLYKIMKD----HKNPKVLSEGILWMVSAVE-DFGVS-HLKLKDLIDFCKDTGLQSS 771 (1739)
Q Consensus 698 ~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~----~KnPKv~~e~l~wl~~~i~-eFG~~-~l~~K~li~~~k~~~l~~s 771 (1739)
+|......+..|.+.-|...+++-+...... ......+.+|+.++..+++ ..|.. ++.-...+..+-.+ |.++
T Consensus 92 Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~-L~s~ 170 (187)
T PF06371_consen 92 LRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALS-LDSP 170 (187)
T ss_dssp HHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TT
T ss_pred hccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHH-HCCC
Confidence 4555566777888887887777765554322 2446789999999988776 56654 34556777777775 9999
Q ss_pred cHHHHHHHHHHHHHH
Q 000275 772 AAATRNATIKLLGAL 786 (1739)
Q Consensus 772 N~~VR~aAi~Ll~~l 786 (1739)
|+.+|..++.+|..+
T Consensus 171 ~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 171 NIKTRKLALEILAAL 185 (187)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999876
No 160
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=52.11 E-value=1.6e+02 Score=35.56 Aligned_cols=137 Identities=12% Similarity=0.190 Sum_probs=104.2
Q ss_pred ChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccc----ccc--hhhhhHHHHHHHhc--------cCCHHHHHHHH
Q 000275 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH----FSG--SSRFLLPVLLEKLK--------EKKPTVAESLT 387 (1739)
Q Consensus 322 dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~----F~~--y~~~~lp~lLeklK--------EKK~~V~eA~~ 387 (1739)
...-++..+=.++.|....+-..+++|+..+...+... |.+ +...+...+...+- +.-..+..++-
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 45566777778888999999999999999999988643 343 37778888888887 88889999999
Q ss_pred HHHHHHHHhc--------CCChhhhHH-HHHHHhh--cC--CchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhh
Q 000275 388 QTLQAMHKAG--------CLNLVDVVE-DVKTSVK--NK--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1739)
Q Consensus 388 ~aLda~~~~~--------~~~l~~~~e-~i~~al~--~K--nP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l 454 (1739)
.||..++... ...+++++- .|+..+. .+ +|.++.-.+..+..++....... .+.++.++|.+...+
T Consensus 196 ~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~-~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 196 PALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISS-VKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHh
Confidence 9999986520 123556654 3776664 33 68888888888888888765543 366788999999988
Q ss_pred CCCCH
Q 000275 455 NDGTP 459 (1739)
Q Consensus 455 ~Ds~~ 459 (1739)
.+.+.
T Consensus 275 ~npf~ 279 (282)
T PF10521_consen 275 ENPFG 279 (282)
T ss_pred cCCCc
Confidence 88764
No 161
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=51.29 E-value=1.2e+02 Score=33.46 Aligned_cols=146 Identities=12% Similarity=0.175 Sum_probs=84.5
Q ss_pred CChhHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHH--hccCCHHHHHHHHHHHHHHHHhc
Q 000275 321 GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK--LKEKKPTVAESLTQTLQAMHKAG 397 (1739)
Q Consensus 321 ~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLek--lKEKK~~V~eA~~~aLda~~~~~ 397 (1739)
.+|-+|...|-.+|. +.+..+-..+++++|.|.. -.||..-.+..-.+. -.+......+... .+...
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-----LDP~~~k~~~~~~~~~~~~~~~~~~~~~~l----~~~~~- 75 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGA-----LDPYKHKSIQKSLDSKSSENSNDESTDISL----PMMGI- 75 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-----cCcHHHhcccccCCccccccccccchhhHH----hhccC-
Confidence 479999999999998 8889999999999998863 244433211111110 0111111111111 11111
Q ss_pred CCChhhhHHHH-----HHHhhcCC-chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHH
Q 000275 398 CLNLVDVVEDV-----KTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1739)
Q Consensus 398 ~~~l~~~~e~i-----~~al~~Kn-P~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~ 471 (1739)
..+.++....+ ...|+++. ..-...+..=+...|+.....+ .+++..++|.++..+...++..|+.-+.-|+.
T Consensus 76 ~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 76 SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11333333222 22222222 2223333344444444433333 45678899999999999999999999999999
Q ss_pred HHHHhC
Q 000275 472 IAKSVG 477 (1739)
Q Consensus 472 l~k~~G 477 (1739)
++.+++
T Consensus 155 lv~ivk 160 (160)
T PF11865_consen 155 LVSIVK 160 (160)
T ss_pred HHHHhC
Confidence 998875
No 162
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=51.23 E-value=84 Score=34.78 Aligned_cols=69 Identities=14% Similarity=0.025 Sum_probs=54.0
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhc--CCCCCCChhHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhc
Q 000275 289 GFWEGVKATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLR 357 (1739)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~--pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gLr 357 (1739)
-...-+.++.+..|-.++.=+..++.+ +.+--..|+..++.|-++|. +....+...|+.++..|-.-++
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344456788899999999888876654 34444678999999999998 7778888899999888877665
No 163
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=51.10 E-value=2.7e+02 Score=32.80 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=49.7
Q ss_pred hccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhh
Q 000275 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413 (1739)
Q Consensus 334 l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~ 413 (1739)
+.|.|..|+-.+++|.+.+ +|.+|+... .. ..+-+.|. .+..+-+.|+.-+.
T Consensus 2 l~d~d~~v~K~~I~~~~~i---------------y~~~~~~i~-~~-------~~~~~~W~-----~~~~lK~~Il~~~~ 53 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSI---------------YPLVFRWIC-VN-------PSDEQLWE-----SMNELKDRILSLWD 53 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHH---------------HHHHHHHHS----------HHHHHHHH-----HHHHHHHHHHHGGG
T ss_pred CCCCcHHHHHHHHHHHHHH---------------HHHHHHHHc-CC-------chHHHHHH-----HHHHHHHHHHHHhc
Confidence 5688999999999987754 344444441 11 11222332 24566788888899
Q ss_pred cCCchhHHHHHHHHHHHHhhC
Q 000275 414 NKVPLVRSLTLNWVTFCIETS 434 (1739)
Q Consensus 414 ~KnP~vk~et~~~l~r~l~~~ 434 (1739)
+.||.+|..+++|+.+++-..
T Consensus 54 ~~~~gvk~~~iKFle~vIl~q 74 (239)
T PF11935_consen 54 SENPGVKLAAIKFLERVILVQ 74 (239)
T ss_dssp SSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHhc
Confidence 999999999999999998543
No 164
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.70 E-value=1.2e+02 Score=44.60 Aligned_cols=223 Identities=16% Similarity=0.197 Sum_probs=133.3
Q ss_pred HHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCC-CCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCC
Q 000275 190 GLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPP 268 (1739)
Q Consensus 190 ~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~-~~p~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (1739)
-++-|.|+|+-.. +...=-++++-+|++.....+.++.+. ..|+|.+-+-.-.+. -. .|+
T Consensus 24 ~~~~e~l~~l~~~-l~~~~ke~~l~tQ~~~~~~l~s~~~~~~~~p~rkL~s~~i~rl-----~~-~gd------------ 84 (2067)
T KOG1822|consen 24 VFCLEWLRYLERN-LNEEQKEDLLVTQLKLEQQLISRLTNGAGPPTRKLISVAIARL-----IS-NGD------------ 84 (2067)
T ss_pred HHHHHHHHHHHhc-CCcchhHHHHHHhHHHHHHHHHHHccCCCchhHHHHHHHHHHH-----Hh-ccc------------
Confidence 4566667776532 222224789999999999999998765 578875432211100 00 011
Q ss_pred CCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChhHHHHHHHHHhccccHHHHHHHHH
Q 000275 269 EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347 (1739)
Q Consensus 269 ~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~ 347 (1739)
.++-|+++. .. .+|...-.-+.-+....++.-+..... --+-....|.|.++.+.+..+-.-..+......
T Consensus 85 ~f~~~~~l~------~c--~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~~ 156 (2067)
T KOG1822|consen 85 SFSLYSRLN------SC--NDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIMI 156 (2067)
T ss_pred hhhHHHHHH------Hh--hhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 122232222 22 234442222445555666665554332 222223348999999999998777788888888
Q ss_pred HHHHHHHHhc--ccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHH
Q 000275 348 AIGNLARGLR--THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLN 425 (1739)
Q Consensus 348 ~l~~lA~gLr--~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~ 425 (1739)
.+....+||+ ..-..|.+.+.-..--.+-|+--+|+.|+..|+-++...+...+ +
T Consensus 157 ~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~~~~~------------------~----- 213 (2067)
T KOG1822|consen 157 TLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLGGPGL------------------G----- 213 (2067)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhcCccc------------------c-----
Confidence 9999999999 33333444444444455556666777777777777765422111 1
Q ss_pred HHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh
Q 000275 426 WVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1739)
Q Consensus 426 ~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~ 476 (1739)
.+. +......+++.+++++-+||.+=+++++.+.-.-
T Consensus 214 ----------~Se----le~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 214 ----------TSE----LETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred ----------chh----hhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 011 1344566778888888888888888888876544
No 165
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=49.65 E-value=2.9e+02 Score=41.61 Aligned_cols=154 Identities=11% Similarity=0.183 Sum_probs=106.5
Q ss_pred HHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc--CC--
Q 000275 325 EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CL-- 399 (1739)
Q Consensus 325 eL~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~--~~-- 399 (1739)
++.+-+-.++. -.+..|--+.++|+..|-.+-+.++..--+.+|.-+---++|+...+++.+-+++..|+..+ ++
T Consensus 1182 efLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~ 1261 (1780)
T PLN03076 1182 EFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITE 1261 (1780)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccc
Confidence 78888888887 67778888999999988887777776666778877777889999999999999998886541 11
Q ss_pred ----ChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHHhh---CC-----h------------------h------HHHHh
Q 000275 400 ----NLVDVVEDVKTSVKNKV-PLVRSLTLNWVTFCIET---SS-----K------------------A------AVLKV 442 (1739)
Q Consensus 400 ----~l~~~~e~i~~al~~Kn-P~vk~et~~~l~r~l~~---~~-----~------------------~------~~~~~ 442 (1739)
.+.|+++-+..+.+++. +.+=..++.+|..|... .+ . . .-...
T Consensus 1262 ~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 1341 (1780)
T PLN03076 1262 TETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDH 1341 (1780)
T ss_pred cchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhH
Confidence 23355555555555554 66666677776655211 00 0 0 00011
Q ss_pred hhhhHHH---HHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000275 443 HKDYVPI---CMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1739)
Q Consensus 443 ~k~~~~~---l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge 478 (1739)
..-+.|. +..+..|..++||..|...|-.+++.-|.
T Consensus 1342 ~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1342 LYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 1334554 44557899999999999999888888774
No 166
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.47 E-value=2.8e+02 Score=37.91 Aligned_cols=150 Identities=18% Similarity=0.199 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccchhh-hhHHHHHHHhccCCH-HHHHHHHHHHHHHHHhcCC
Q 000275 323 FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLLEKLKEKKP-TVAESLTQTLQAMHKAGCL 399 (1739)
Q Consensus 323 y~eL~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~-~~lp~lLeklKEKK~-~V~eA~~~aLda~~~~~~~ 399 (1739)
...++..|.++++ ..|.-++.+|++|+..|+..+....+--+. ..+|.+++||-.=-- -|.|...+||..|...
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--- 285 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--- 285 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---
Confidence 5679999999999 999999999999999999999877654433 478888888754221 2334444455444432
Q ss_pred ChhhhHH-----HHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000275 400 NLVDVVE-----DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1739)
Q Consensus 400 ~l~~~~e-----~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k 474 (1739)
...+|+. .++.+++==.=.+..-++.-.+.|-...++..+ ..+-..+|.|..+|.--+.-+=+..+-|+..+.-
T Consensus 286 H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 286 HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVMEALPLLTPLLSYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 1112211 111111100001111222233333333332221 2234556777777766666666666666665554
Q ss_pred Hh
Q 000275 475 SV 476 (1739)
Q Consensus 475 ~~ 476 (1739)
-+
T Consensus 365 ~f 366 (1051)
T KOG0168|consen 365 GF 366 (1051)
T ss_pred hc
Confidence 43
No 167
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=46.38 E-value=2.3e+02 Score=33.73 Aligned_cols=168 Identities=13% Similarity=0.138 Sum_probs=102.0
Q ss_pred hhhhccChHHHHHHHHHHHHhhhcCCCCC--CChhHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccchhhhhH
Q 000275 292 EGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1739)
Q Consensus 292 ~~l~s~KWkeRkEaLe~l~~l~~~pKi~~--~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~l 368 (1739)
+-+.++.=+.|..||..|..+..+..-.. ..| +...+..+++ ..|..+.+.+++.+..|. +-.++..-....+
T Consensus 61 ~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l~~~i 136 (254)
T PF04826_consen 61 SLLNDPNPSVREKALNALNNLSVNDENQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHMLANYI 136 (254)
T ss_pred HHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhHHhhH
Confidence 33566677888889999988754322111 235 5666666676 567788888999999986 3333333355567
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhh-----HHHHHHHhhcC-CchhHHHHHHHHHHHHhhC--------
Q 000275 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-----VEDVKTSVKNK-VPLVRSLTLNWVTFCIETS-------- 434 (1739)
Q Consensus 369 p~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~-----~e~i~~al~~K-nP~vk~et~~~l~r~l~~~-------- 434 (1739)
|.++.-+-.-...++..+..+|--+.... .-..++ +..+..-++.. +..+-..++.|+.+.-.+.
T Consensus 137 ~~ll~LL~~G~~~~k~~vLk~L~nLS~np-~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~ 215 (254)
T PF04826_consen 137 PDLLSLLSSGSEKTKVQVLKVLVNLSENP-DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFV 215 (254)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccCH-HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceec
Confidence 77777777767777777777777665431 001111 23344444444 3456667777776654321
Q ss_pred ----ChhHHHH---hhhhhHHHHHhhhCCCCHHHHHH
Q 000275 435 ----SKAAVLK---VHKDYVPICMECLNDGTPEVRDA 464 (1739)
Q Consensus 435 ----~~~~~~~---~~k~~~~~l~k~l~Ds~~~VR~a 464 (1739)
+..++.. ..+.+..-+..+.++++++||+.
T Consensus 216 ~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 216 QDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred cccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 2222221 22457777778889999999974
No 168
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.08 E-value=1.7e+02 Score=42.14 Aligned_cols=114 Identities=22% Similarity=0.228 Sum_probs=79.1
Q ss_pred HhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc--CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000275 355 GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1739)
Q Consensus 355 gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~--~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~ 432 (1739)
+....|.+....++.-||--++|.+.+||.-+..||..+...- -.+..++.+.|-.-+.+-..+||..++..+.|.+-
T Consensus 805 a~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl 884 (1692)
T KOG1020|consen 805 AHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL 884 (1692)
T ss_pred HhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh
Confidence 4445566666667777888899999999999999999998751 12234555556566666677888888888888776
Q ss_pred hCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000275 433 TSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1739)
Q Consensus 433 ~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~ 473 (1739)
..+. ....+-..+.....|+...||+-+..-+-.+.
T Consensus 885 ~~~e-----~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic 920 (1692)
T KOG1020|consen 885 SIPE-----LIFQYYDQIIERILDTGVSVRKRVIKILRDIC 920 (1692)
T ss_pred ccHH-----HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH
Confidence 4422 22445566777778888888887766554443
No 169
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.83 E-value=2e+02 Score=35.58 Aligned_cols=95 Identities=14% Similarity=0.195 Sum_probs=67.9
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhh-hhHHHHHhhh-CCCCHHHHHHHHHHHHHHHHH-------
Q 000275 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK-DYVPICMECL-NDGTPEVRDAAFSVLAAIAKS------- 475 (1739)
Q Consensus 405 ~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k-~~~~~l~k~l-~Ds~~~VR~aa~~~l~~l~k~------- 475 (1739)
+..++..++|..+.+|.-++..+..|+++.|+..- .++. ...+.+++.+ .|.+-.||..|.-|+..+++.
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe-~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~ 204 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQE-QVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDE 204 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHH-HHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHH
Confidence 34566699999999999999999999998876542 2222 2555566555 567778999999999888754
Q ss_pred ----hChhHHHHHhhc--CCHHHHHHHHHHH
Q 000275 476 ----VGMRPLERSIEK--LDDVRRNKLSEMI 500 (1739)
Q Consensus 476 ----~Ge~~l~~~l~~--Ld~~kk~KI~e~~ 500 (1739)
-|+..+.+.+.. .+..-+-|+-..+
T Consensus 205 fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll 235 (342)
T KOG2160|consen 205 FLKLNGYQVLRDVLQSNNTSVKLKRKALFLL 235 (342)
T ss_pred HHhcCCHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 567778888876 5544444554444
No 170
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=45.40 E-value=2.6e+02 Score=38.21 Aligned_cols=162 Identities=15% Similarity=0.172 Sum_probs=97.4
Q ss_pred HHHhhhcC-CCCCCChhHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHh--cccccchhh--hhHHHHHHHhccCCHHH
Q 000275 309 LTKLASTK-RIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGL--RTHFSGSSR--FLLPVLLEKLKEKKPTV 382 (1739)
Q Consensus 309 l~~l~~~p-Ki~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gL--r~~F~~y~~--~~lp~lLeklKEKK~~V 382 (1739)
+..+..++ ..+ ..+.+.+.-|.+++. ..+-- ..+.|+|.||+-- .-+|..+.. .++|-+-+.++.....
T Consensus 474 IRNiS~h~~~~k-~~f~~~i~~L~~~v~~~~~ee---~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~- 548 (708)
T PF05804_consen 474 IRNISQHDGPLK-ELFVDFIGDLAKIVSSGDSEE---FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASE- 548 (708)
T ss_pred HHHHHhcCchHH-HHHHHHHHHHHHHhhcCCcHH---HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCC-
Confidence 34455554 332 346777777777776 33544 5556666666543 235666653 6888888888766441
Q ss_pred HHHHHHHHHHHHHhcCCC------h--hhhHHHHHHHhhcCC--chhHHHHHHHHHHHHhhCC-hhHHHHhhhhhHHHHH
Q 000275 383 AESLTQTLQAMHKAGCLN------L--VDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICM 451 (1739)
Q Consensus 383 ~eA~~~aLda~~~~~~~~------l--~~~~e~i~~al~~Kn--P~vk~et~~~l~r~l~~~~-~~~~~~~~k~~~~~l~ 451 (1739)
=+-+.+++-.+..- |.. + ..+++.+.+.|+.|. -.+=.|++-.+.+.+.+.. +..+.+. ..+...++
T Consensus 549 dDl~LE~Vi~~gtl-a~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~yli 626 (708)
T PF05804_consen 549 DDLLLEVVILLGTL-ASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLI 626 (708)
T ss_pred hHHHHHHHHHHHHH-HCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHH
Confidence 12223333222111 111 1 145666777777665 4455577777777776532 2222221 35778899
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000275 452 ECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1739)
Q Consensus 452 k~l~Ds~~~VR~aa~~~l~~l~k~~G 477 (1739)
.++.|++++||+-|-.||..++-+=.
T Consensus 627 dL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 627 DLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999999999886643
No 171
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=44.72 E-value=1.3e+02 Score=33.32 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=61.4
Q ss_pred hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCC-CCHHHHHHHHHHHHHHHHHhCh
Q 000275 401 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND-GTPEVRDAAFSVLAAIAKSVGM 478 (1739)
Q Consensus 401 l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~D-s~~~VR~aa~~~l~~l~k~~Ge 478 (1739)
+..+...|...+.+++|..|-.-+..+.-.++..+...+......++..+++.++. ..+.+++++..++..|+..++.
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45566778889999999999777777777777766666655557788888888866 4456799999999999988773
No 172
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.68 E-value=1.4e+02 Score=41.88 Aligned_cols=110 Identities=19% Similarity=0.233 Sum_probs=74.5
Q ss_pred HHHHH-HHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCC
Q 000275 380 PTVAE-SLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458 (1739)
Q Consensus 380 ~~V~e-A~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~ 458 (1739)
+.||- ++..+-|--+.+ ..-++.+-+.+..-|..-+|+||..++.-|+..+-+. ..+ +|-.++-++.|+.|.+
T Consensus 975 p~IRsN~VvalgDlav~f-pnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miK-VKGql~eMA~cl~D~~ 1048 (1251)
T KOG0414|consen 975 PRIRSNLVVALGDLAVRF-PNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIK-VKGQLSEMALCLEDPN 1048 (1251)
T ss_pred ceeeecchheccchhhhc-ccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhH-hcccHHHHHHHhcCCc
Confidence 44443 334444544444 2345566677778888999999999998888887532 112 2667888999999999
Q ss_pred HHHHHHHHHH--------------HHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhc
Q 000275 459 PEVRDAAFSV--------------LAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (1739)
Q Consensus 459 ~~VR~aa~~~--------------l~~l~k~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~ 502 (1739)
++||+-|... |.-|+-++|.. .|+..+-+.|.+++=|
T Consensus 1049 ~~IsdlAk~FF~Els~k~n~iynlLPdil~~Ls~~-------~l~~~~~~~vm~~li~ 1099 (1251)
T KOG0414|consen 1049 AEISDLAKSFFKELSSKGNTIYNLLPDILSRLSNG-------NLEEESYKTVMEFLIG 1099 (1251)
T ss_pred HHHHHHHHHHHHHhhhcccchhhhchHHHHhhccC-------cccchhhHHHHHHHHH
Confidence 9999999844 44455555543 5666677777777754
No 173
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=44.38 E-value=4.7e+02 Score=28.81 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=89.4
Q ss_pred CCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCH-HHHHHHHHHHHHHH
Q 000275 316 KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKP-TVAESLTQTLQAMH 394 (1739)
Q Consensus 316 pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~-~V~eA~~~aLda~~ 394 (1739)
.|+.++++..++..|.+...+.|.......++++-.-|.... .|.++ ...++..+....+ .++..+.+.+...+
T Consensus 9 nklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~-~~~~~----~a~l~~~l~~~~~~~f~~~ll~~~~~~f 83 (209)
T PF02854_consen 9 NKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEP-NFSPL----YARLCAALNSRFPSEFRSLLLNRCQEEF 83 (209)
T ss_dssp HHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSG-GGHHH----HHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCc-hHHHH----HHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 356688999999999999885588888888888877666655 34333 3334444444444 66666665555554
Q ss_pred HhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhC--ChhHHHHhhhhhHHHHHhhhCCCC-HHHHHHHHHHHHH
Q 000275 395 KAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS--SKAAVLKVHKDYVPICMECLNDGT-PEVRDAAFSVLAA 471 (1739)
Q Consensus 395 ~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~--~~~~~~~~~k~~~~~l~k~l~Ds~-~~VR~aa~~~l~~ 471 (1739)
.... ...-.+......-+-+...+.|++..+... +...+ -.++-.++....+.. +.--+...+++.+
T Consensus 84 ~~~~------~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i----~~~l~~ll~~~~~~~~~~~~~~~ie~~~~ 153 (209)
T PF02854_consen 84 EERY------SNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKII----FDILRELLSDGTDECQPPPDEENIECLCT 153 (209)
T ss_dssp HHHT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHH----HHHHHHHHHHTSHHCCHHTCHHHHHHHHH
T ss_pred HHhh------hhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhH----HHHHHHHHhcccccccCCCcHhHHHHHHH
Confidence 4311 111222333444455668888999888643 22222 223333333333211 4556677889999
Q ss_pred HHHHhChh
Q 000275 472 IAKSVGMR 479 (1739)
Q Consensus 472 l~k~~Ge~ 479 (1739)
++..+|..
T Consensus 154 lL~~~G~~ 161 (209)
T PF02854_consen 154 LLKTCGKK 161 (209)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999975
No 174
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=43.93 E-value=2e+02 Score=35.91 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=73.4
Q ss_pred HHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC---h----hhhHHHHHHHhhcCC-chhHHHH
Q 000275 352 LARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN---L----VDVVEDVKTSVKNKV-PLVRSLT 423 (1739)
Q Consensus 352 lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~---l----~~~~e~i~~al~~Kn-P~vk~et 423 (1739)
+|..++..| .-.+.++-.|..|+.-+-++|+=-+..-||+++.. |-+ + -++..++...+.+|. |.|+.-.
T Consensus 32 vCD~v~~~~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~N-Cg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~ 109 (462)
T KOG2199|consen 32 VCDKVGSDP-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVAN-CGKRFRLEVSSRDFTTELRALIESKAHPKVCEKM 109 (462)
T ss_pred HHHhhcCCC-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh-cchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHH
Confidence 445555556 56788888999999999999999999999999987 733 1 255566666666444 8998877
Q ss_pred HHHHHHHHhhCChhHHHHhhhhhHHHHHh----hhCCCCHHHHHHHHH
Q 000275 424 LNWVTFCIETSSKAAVLKVHKDYVPICME----CLNDGTPEVRDAAFS 467 (1739)
Q Consensus 424 ~~~l~r~l~~~~~~~~~~~~k~~~~~l~k----~l~Ds~~~VR~aa~~ 467 (1739)
-..+..+-+.+.+..-..++.+++.-+.+ .+.+.+.....+...
T Consensus 110 ~~lv~eWsee~K~Dp~lsLi~~l~~klk~~g~~f~~~~~k~~k~a~~~ 157 (462)
T KOG2199|consen 110 RDLVKEWSEEFKKDPSLSLISALYKKLKEEGITFLVAGSKPEKHAMST 157 (462)
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHcCCCcccCCCchhHHHhhc
Confidence 77777776655444332333333333332 344555555444443
No 175
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=43.61 E-value=4.5e+02 Score=35.70 Aligned_cols=29 Identities=17% Similarity=0.120 Sum_probs=20.6
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHH
Q 000275 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAM 393 (1739)
Q Consensus 365 ~~~lp~lLeklKEKK~~V~eA~~~aLda~ 393 (1739)
+.=+-.+|+.|++.+...++-..+.+|..
T Consensus 334 r~gL~~~l~~l~~i~n~~ldvqlkvfdE~ 362 (1102)
T KOG1924|consen 334 RDGLHKYLPDLTEINNDILDVQLKVFDEH 362 (1102)
T ss_pred HHhHHHHHHHhhhhccHHHHHHHHHHhhh
Confidence 34456788899999888887666666544
No 176
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=42.99 E-value=1.7e+02 Score=41.27 Aligned_cols=66 Identities=21% Similarity=0.111 Sum_probs=50.3
Q ss_pred CCcchHHHHHHHHHHHhccCCCCcc-hhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000275 985 LGAEGRKDLFDWLSKQLTGLSGFPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (1739)
Q Consensus 985 ~~p~~r~e~l~wl~~~l~~~~~~~~-~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~ 1050 (1739)
.||..|..+|.-..+-+.....+.. ....+.-++.+|+||+.-||++|-.++..++.+-.+-....
T Consensus 371 vsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~ 437 (1251)
T KOG0414|consen 371 VSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELR 437 (1251)
T ss_pred ccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhc
Confidence 4788999999887764443333322 45566668889999999999999999999888887776654
No 177
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=42.97 E-value=84 Score=35.14 Aligned_cols=118 Identities=15% Similarity=0.208 Sum_probs=77.3
Q ss_pred chhhhhHHHHHHHhccCCH------------------HHHHHHHHHHHHHHHh--cCCChhhhHHHHHHHhhcCCchhHH
Q 000275 362 GSSRFLLPVLLEKLKEKKP------------------TVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRS 421 (1739)
Q Consensus 362 ~y~~~~lp~lLeklKEKK~------------------~V~eA~~~aLda~~~~--~~~~l~~~~e~i~~al~~KnP~vk~ 421 (1739)
+|...++|.++..++-++. .+|-++-+||.++... ..+.+.++++.+..++++ .+.+|.
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~ 83 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKM 83 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHH
Confidence 5667888888888887774 6788999999999886 225577888999999999 999999
Q ss_pred HHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHH
Q 000275 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499 (1739)
Q Consensus 422 et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~Ld~~kk~KI~e~ 499 (1739)
-+...|.|.....|.... .-+..+++++-+.| -+-+.+.+...-+++.++..|.-++-.
T Consensus 84 L~~~~l~kl~~~~p~~v~-~~Ld~l~~~l~~~L------------------~~k~k~~AvkQE~Ek~~E~~rs~lr~~ 142 (169)
T PF08623_consen 84 LCHLMLSKLAQLAPEEVL-QRLDSLVEPLRKTL------------------SKKLKENAVKQEIEKQQELIRSVLRAV 142 (169)
T ss_dssp HHHHHHHHHHHS-HHHHH-HCCTTTHHHHHHHH------------------H----TTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHH-HHHHHHHHHHHHHh------------------hccCCCCcccccHHHHHHHHHHHHHHH
Confidence 999999999876544333 22455555554443 334455555555666666555554443
No 178
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=42.55 E-value=34 Score=29.24 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=26.8
Q ss_pred ccCccchHhHHHHHhhhcCCCccHHHHHHHHHHH
Q 000275 750 GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLL 783 (1739)
Q Consensus 750 G~~~l~~K~li~~~k~~~l~~sN~~VR~aAi~Ll 783 (1739)
....++-..+.+.+... |..+.|.||.+|+.++
T Consensus 10 dp~ll~~~~v~~~i~~r-l~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 10 DPTLLDSSDVQSAIIRR-LSDSSPSVREAAVDLL 42 (42)
T ss_pred CccccchHHHHHHHHHH-hcCCChHHHHHHHHHC
Confidence 33456667888888886 9999999999999874
No 179
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=41.82 E-value=85 Score=43.80 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=65.9
Q ss_pred CHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCC--ccchHHHHHHHHHHH
Q 000275 590 SLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGW--SEKNVQVQQQVIEVI 667 (1739)
Q Consensus 590 s~ee~e~~~~~l~~~~i~~~L~~~~WK~Rl~a~e~l~~~v~~~~~~~~~~~~Lvr~l~~~Pgw--kesNfqV~~~~leil 667 (1739)
..|++++.+..++..=++...++-.-.-|...+++|..|++..+..-- .+..+||+ || .|.|.+|-+.++.++
T Consensus 276 ~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl-~dsYLKYi----GWtLsDk~~~VRl~~lkaL 350 (1048)
T KOG2011|consen 276 QQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFL-SDSYLKYI----GWTLSDKNGTVRLRCLKAL 350 (1048)
T ss_pred HHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHh-cchHHHHh----cceeecCccHHHHHHHHHH
Confidence 457888888888888889999999999999999999999999654311 23345554 89 799999999999999
Q ss_pred HHHHHh
Q 000275 668 NYLAAT 673 (1739)
Q Consensus 668 ~~la~~ 673 (1739)
..|.++
T Consensus 351 ~~L~e~ 356 (1048)
T KOG2011|consen 351 IKLYEK 356 (1048)
T ss_pred HHHHhc
Confidence 999886
No 180
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=41.67 E-value=3.3e+02 Score=32.48 Aligned_cols=149 Identities=12% Similarity=0.146 Sum_probs=101.4
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccC--CHHHHHHHHHHHHHHHHh--cCCChh
Q 000275 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK--KPTVAESLTQTLQAMHKA--GCLNLV 402 (1739)
Q Consensus 327 ~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEK--K~~V~eA~~~aLda~~~~--~~~~l~ 402 (1739)
+..+...+.|.|..|-..|++++..++.. .+.....+.+++.+++...-. ...+..|...+|..+.-. +..-+.
T Consensus 56 i~lI~~lL~~p~~~vr~~AL~aL~Nls~~--~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~ 133 (254)
T PF04826_consen 56 ISLIGSLLNDPNPSVREKALNALNNLSVN--DENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA 133 (254)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH
Confidence 56778888899999999999999988655 344556778888888866554 567777777777766321 011144
Q ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhh-hhHHHHHhhhCCC-CHHHHHHHHHHHHHHHHHhChh
Q 000275 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK-DYVPICMECLNDG-TPEVRDAAFSVLAAIAKSVGMR 479 (1739)
Q Consensus 403 ~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k-~~~~~l~k~l~Ds-~~~VR~aa~~~l~~l~k~~Ge~ 479 (1739)
..+.++..-+...+..+|.++++.|.. |...+ .....++. ...+.++.+++.+ +.++.-.+...+.-|-..++.+
T Consensus 134 ~~i~~ll~LL~~G~~~~k~~vLk~L~n-LS~np-~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 134 NYIPDLLSLLSSGSEKTKVQVLKVLVN-LSENP-DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred hhHHHHHHHHHcCChHHHHHHHHHHHH-hccCH-HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 566778888889999999999998774 33222 22222332 2456677777765 6777777777777776666644
No 181
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=41.54 E-value=3.5e+02 Score=34.02 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=94.0
Q ss_pred HhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhH-HHHHHHhc-----
Q 000275 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP-YVTTALTD----- 982 (1739)
Q Consensus 909 k~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~-~i~~~L~~----- 982 (1739)
++++...++++..+..=-..-+..++...+|.++..+-+.-+.+|+.|+..+..+...+|-+..+. .+.+.+..
T Consensus 148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~ 227 (372)
T PF12231_consen 148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG 227 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc
Confidence 567888899998888888888888888899999999999999999999999998887776433332 22222211
Q ss_pred ---------------ccCCcchHHHHHHHHHHHhccC--CCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000275 983 ---------------AKLGAEGRKDLFDWLSKQLTGL--SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1739)
Q Consensus 983 ---------------~~~~p~~r~e~l~wl~~~l~~~--~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1739)
.+.+.-.=-++|.++..-|... ...+....++...=.|.++.++.||..|..+=..++-
T Consensus 228 ~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 228 KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1011112235677766655432 2234456777777779999999999999988777666
No 182
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=41.43 E-value=1.4e+02 Score=30.71 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc
Q 000275 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 487 (1739)
Q Consensus 417 P~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~ 487 (1739)
..-|..++.=+.+.++ .....+......++..+-.+++.. +.|+.|++|-..+++.++++.+.++++.
T Consensus 29 ~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~ 96 (107)
T PF08064_consen 29 IPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQ 96 (107)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 4667777777777776 323333333334455555555555 9999999999999999999999988875
No 183
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=40.86 E-value=99 Score=29.48 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=61.6
Q ss_pred HHHHHHHhcChhhHhhhhhh--hHHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHHH
Q 000275 918 TLGAVASAMGPAVEKSSKGV--LSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFD 995 (1739)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l--~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~ 995 (1739)
++..++.-+|+.+++.++.+ -...+..+....+..++.+.+.|..|....|-..-+..+..+|..- +|.++..
T Consensus 3 l~~~l~~~~~~~Wk~La~~Lg~~~~~i~~i~~~~~~~~~~~~~~L~~W~~~~~~~at~~~L~~aL~~~-----~~~d~~~ 77 (83)
T PF00531_consen 3 LFDLLAEDLGSDWKRLARKLGLSESEIENIEEENPDLREQTYEMLQRWRQREGPNATVDQLIQALRDI-----GRNDLAE 77 (83)
T ss_dssp HHHHHHHSHSTCHHHHHHHTTS-HHHHHHHHHHSTSHHHHHHHHHHHHHHHHGSTSSHHHHHHHHHHT-----THHHHHH
T ss_pred HHHHHhhcchhhHHHHHHHhCcCHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHC-----CcHHHHH
Confidence 44556788888888876654 3566777777666699999999999999988888889999999853 5888888
Q ss_pred HHHHH
Q 000275 996 WLSKQ 1000 (1739)
Q Consensus 996 wl~~~ 1000 (1739)
.|.+.
T Consensus 78 ~i~~~ 82 (83)
T PF00531_consen 78 KIEQM 82 (83)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 77654
No 184
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.05 E-value=2.9e+02 Score=37.04 Aligned_cols=186 Identities=20% Similarity=0.237 Sum_probs=119.2
Q ss_pred cCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccCcCCCCCCCCCCCC
Q 000275 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 846 (1739)
Q Consensus 767 ~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lp 846 (1739)
||+..|-.||..|..|+...|=..||++.. .+.=+.||..|.-
T Consensus 182 ~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~------e~mD~i~~kQf~~------------------------------- 224 (1005)
T KOG1949|consen 182 GLKARNSEVRSNAALLFVEAFPIRDPDLHA------EEMDSIIQKQFEE------------------------------- 224 (1005)
T ss_pred hhccCchhhhhhHHHHHHHhccCCCCCccH------HHHHHHHHHHHHH-------------------------------
Confidence 599999999999999999999888887632 1112233444332
Q ss_pred cccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-chhhHhHHHHHHHHHHHHHHh
Q 000275 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASA 925 (1739)
Q Consensus 847 rvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~a 925 (1739)
+++-++|.==-+|.+|.+-|-+++.+==--|-|+...||+.-.-.-+ .|+-.-|-..+.+++..++-
T Consensus 225 -----------l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~- 292 (1005)
T KOG1949|consen 225 -----------LYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD- 292 (1005)
T ss_pred -----------HHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-
Confidence 33334555556899999999999975334577887667766666656 57777776677777766652
Q ss_pred cChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHh--cchhhhhH--HHHHHHhcccCCcchHHHHHHHHHHHh
Q 000275 926 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA--VHLDKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1739)
Q Consensus 926 mG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~--~gl~~~~~--~i~~~L~~~~~~p~~r~e~l~wl~~~l 1001 (1739)
.|-+-.....++|.+=-.|-|+-..||=|+...|-.+-+. ..+-.+++ .+..-|...+ .|.-|.-+.--+.-+|
T Consensus 293 -np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~-~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 293 -NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDS-RPVSRRLVSLIFNSFL 370 (1005)
T ss_pred -CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhccc-cHHHHHHHHHHHHhhc
Confidence 2333344556677776778899999999999888765433 23333333 4455555443 2444444444444444
Q ss_pred cc
Q 000275 1002 TG 1003 (1739)
Q Consensus 1002 ~~ 1003 (1739)
+-
T Consensus 371 P~ 372 (1005)
T KOG1949|consen 371 PV 372 (1005)
T ss_pred CC
Confidence 33
No 185
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.91 E-value=3.7e+02 Score=36.92 Aligned_cols=140 Identities=11% Similarity=0.142 Sum_probs=97.5
Q ss_pred hccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhh
Q 000275 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413 (1739)
Q Consensus 334 l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~ 413 (1739)
+.|--+.+-.-|+..+..+++.=-+.=--.--.++...++-+||.-+-|-=.+..++-.+++ +-.+++++++.+.-.
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce---vy~e~il~dL~e~Y~ 812 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE---VYPEDILPDLSEEYL 812 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH---hcchhhHHHHHHHHH
Confidence 34999999999999998888853221112234678889999999999988777776666665 346788999887443
Q ss_pred ---cCC-chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000275 414 ---NKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1739)
Q Consensus 414 ---~Kn-P~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~G 477 (1739)
+|+ |.-|.-.=.-+.+.+...+.-. .+....++..++++++|++..-|-.++..+|-++.+..
T Consensus 813 s~k~k~~~d~~lkVGEai~k~~qa~Gel~-~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 813 SEKKKLQTDYRLKVGEAILKVAQALGELV-FKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred hcccCCCccceehHHHHHHHHHHHhccHH-HHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 222 2333222233444444443322 24445788999999999999999999999999998865
No 186
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=39.48 E-value=92 Score=35.70 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=58.2
Q ss_pred HHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhh
Q 000275 410 TSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (1739)
Q Consensus 410 ~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~ 486 (1739)
.+|.-+.-..-.+++..++..+++..... .+.+..++..+.+.-++.+-+.|+.+-.|+|+.++.+|.+.+...+.
T Consensus 7 ~~L~~~y~~aw~~vl~v~s~lf~~lg~~~-~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lP 82 (198)
T PF08161_consen 7 SLLSYRYQHAWPEVLNVLSALFEKLGERS-SPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILP 82 (198)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCC
Confidence 44555666677788888888887654432 23457777888888899999999999999999999999887765543
No 187
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=39.22 E-value=2.1e+02 Score=30.35 Aligned_cols=80 Identities=11% Similarity=0.176 Sum_probs=58.6
Q ss_pred cccCCCCCCccchHHHHhhhc-chhhHhHHHHHHHHHHHHHHhcChhhHhhhh--hhhHHHHHHhccCchhHHHHHHHHH
Q 000275 884 ANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKKHMRECTLTVL 960 (1739)
Q Consensus 884 ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~k--~l~~~il~~l~D~K~~vR~aa~~al 960 (1739)
+-.++..+. .++++.|.+.| +..+...+..|++=||.++... |..++.+. ..=.-|.+.+.+..+.||-.|+.|+
T Consensus 33 Na~kf~~~~-~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 33 NADKFEENN-FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-PNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HSGGGSSGG-GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHcc-cHHHHHHHHHHccCCCcceeehhhcchHHHHHHC-hhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 336778877 99999999999 5557777888999999999887 33232222 2335677888889999999999998
Q ss_pred HHHHH
Q 000275 961 DAWLA 965 (1739)
Q Consensus 961 da~~~ 965 (1739)
..++.
T Consensus 111 Qklm~ 115 (119)
T PF11698_consen 111 QKLMV 115 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 188
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=39.14 E-value=1.5e+02 Score=35.64 Aligned_cols=129 Identities=17% Similarity=0.159 Sum_probs=73.9
Q ss_pred cchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhh---cCC--chhHHHHHHHHHHHHhhCC
Q 000275 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK---NKV--PLVRSLTLNWVTFCIETSS 435 (1739)
Q Consensus 361 ~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~---~Kn--P~vk~et~~~l~r~l~~~~ 435 (1739)
.-|..-++.+| +-|.....|+|+.++|.. -.+|.++++.+..++. .|| -.++.-|+.-+...|-..+
T Consensus 196 q~YF~kvisal---~dEs~~~~r~aAl~sLr~-----dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~ 267 (450)
T COG5095 196 QMYFDKVISAL---LDESDEQTRDAALESLRN-----DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNK 267 (450)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhcc-----CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC
Confidence 34555566666 346667778877776642 2467777776665553 122 2233334434443433222
Q ss_pred hhHHHHhhhhhHHHHHhhh------CCCCH----HHHHHHHHHHHHHHHHhChhHHHHHhhcCCH-HHHHHHHHHHhc
Q 000275 436 KAAVLKVHKDYVPICMECL------NDGTP----EVRDAAFSVLAAIAKSVGMRPLERSIEKLDD-VRRNKLSEMIAG 502 (1739)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l------~Ds~~----~VR~aa~~~l~~l~k~~Ge~~l~~~l~~Ld~-~kk~KI~e~~~~ 502 (1739)
.--+.+.+.+++|.++.|+ ++.+- .+||-|+..++...+.+|.- ...|.| .-++..+..++.
T Consensus 268 ~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~-----YktLkPRvtrTllKafLD~ 340 (450)
T COG5095 268 YIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS-----YKTLKPRVTRTLLKAFLDR 340 (450)
T ss_pred ceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh-----hhhhchHHHHHHHHHHHhc
Confidence 1112255677888887776 23222 49999999999999988831 123333 345666677664
No 189
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=38.71 E-value=1.3e+02 Score=37.79 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=42.8
Q ss_pred hhhhH-HHHHHHh-cccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHH
Q 000275 970 DKMVP-YVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (1739)
Q Consensus 970 ~~~~~-~i~~~L~-~~~~~p~~r~e~l~wl~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~ 1035 (1739)
..|+. .|..-|. +.+..|-+|.+.+.++.. +.+.-+...+..+++.++.||.+.+.-|+.-|.-+
T Consensus 303 ~~Ff~~~v~peL~~~~~~~piLka~aik~~~~-Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 303 VDFFSQHVLPELQPDVNSHPILKADAIKFLYT-FRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHH-HGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHhHHHhcccCCCCcchHHHHHHHHHH-HHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 34443 3444454 334578899999999884 44443344567777789999999999999976654
No 190
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=37.47 E-value=2.4e+02 Score=34.67 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=53.8
Q ss_pred cCCchhHHHHHHHHHHHHhhCChhHH---HHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000275 414 NKVPLVRSLTLNWVTFCIETSSKAAV---LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1739)
Q Consensus 414 ~KnP~vk~et~~~l~r~l~~~~~~~~---~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge 478 (1739)
+..|..|.+-..+|..+...+...-+ ....+.++..++-++.++..+|-+.|..++..++.-+..
T Consensus 131 ~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 131 EEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999887654322 134578899999999999999999999999999987765
No 191
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.36 E-value=4.4e+02 Score=38.32 Aligned_cols=214 Identities=15% Similarity=0.188 Sum_probs=137.7
Q ss_pred HHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhH-hHHHHHHHHHHhccCcchHHHHHHhhhhHHHHHHHHhcC
Q 000275 1168 MKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIE-VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEG 1246 (1739)
Q Consensus 1168 ~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~-~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~ 1246 (1739)
--.+-+.|...|.+.+-..+++|+..+-..+.+...-+-. +.|+...|+ =||+|--..|=++|++...+.+..
T Consensus 257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl-~r~~D~~~~vR~~~v~~~~~~l~~----- 330 (1266)
T KOG1525|consen 257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFL-GRFNDISVEVRMECVESIKQCLLN----- 330 (1266)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHH-HHhccCChhhhhhHHHHhHHHHhc-----
Confidence 3346678888888999888999988777666543322222 556655554 599999999999999999977655
Q ss_pred CcccHhHHhhhhhHHHHhhCCChHHHHHHHHHH---HHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHh--
Q 000275 1247 YSLTESEAAVFLPCLVEKSGHNIEKVREKMREL---TKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH-- 1321 (1739)
Q Consensus 1247 y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i---~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~li~~-- 1321 (1739)
+=+-.++....-+|-+..=|..+.+|..|-.. ...+...|.+- ++.++.|-++-|-+++|.+|+.-|..+.++
T Consensus 331 -~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~ 408 (1266)
T KOG1525|consen 331 -NPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKNVY 408 (1266)
T ss_pred -CchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 22446777777777777778887777643221 24455666666 999999999999999999999999999986
Q ss_pred ----hcCcccCccch--HHHHHHHhccCChhHHHHHHHHHHHHHHHh-----ch---hHHHHhccCCHHHHhhHHHHHHH
Q 000275 1322 ----HGAEISGQLKS--LQIVASLTAERDGEIRKAALNTLATGYKIL-----GE---DIWRYVGKLTDAQKSMLDDRFKW 1387 (1739)
Q Consensus 1322 ----~G~~v~~~~Ka--l~~ia~~i~drD~~VR~AALn~l~~~y~~~-----Gd---~v~k~~g~ls~k~~s~Leer~kr 1387 (1739)
.|-....+.-. -..+=.++-+.|=.-| +=+-++-.-|.+= -+ .+|..++.+...-..-+++.++|
T Consensus 409 ~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r-~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~ 487 (1266)
T KOG1525|consen 409 CLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR-LLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKR 487 (1266)
T ss_pred HhhccCcccccccccccchhHHhhHhhccccHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHH
Confidence 23222111111 1222223333333333 2122222222221 11 25567777777777777888877
Q ss_pred hHH
Q 000275 1388 KVR 1390 (1739)
Q Consensus 1388 ~~~ 1390 (1739)
..+
T Consensus 488 q~~ 490 (1266)
T KOG1525|consen 488 QSR 490 (1266)
T ss_pred HHH
Confidence 655
No 192
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.35 E-value=5.7e+02 Score=34.53 Aligned_cols=372 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred chHHHHhhhcchhhHhHHHHHHHHHHHHHHh-cChhhHhhhhhhhHHHHHHh---ccCchhHHHHHHHHH--------HH
Q 000275 895 ELFGGLRGRLYDSNKNLVMATLITLGAVASA-MGPAVEKSSKGVLSDILKCL---GDNKKHMRECTLTVL--------DA 962 (1739)
Q Consensus 895 eL~~aLk~Rl~DsNk~lv~~al~ii~~lA~a-mG~~~~k~~k~l~~~il~~l---~D~K~~vR~aa~~al--------da 962 (1739)
|+...|+.++..-++.+-..++..+...+.+ || .+...+.-+.... ++.+.--.+.+.+.+ ..
T Consensus 190 ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr-----~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~~~~e~~iF~ 264 (620)
T PRK14954 190 EIQSQLQMICRAEGIQIDADALQLIARKAQGSMR-----DAQSILDQVIAFSVGSEAEKVIAYQGVAELLNYIDDEQFFD 264 (620)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH-----HHHHHHHHHHHhccccccCCccCHHHHHHHHcCCCHHHHHH
Q ss_pred HHHhcchhhhhH--HHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 000275 963 WLAAVHLDKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1739)
Q Consensus 963 ~~~~~gl~~~~~--~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1739)
+.+.++-...-. .+...|...+..|. .+|..|.+++ .++..+-...-..+.+....|.+...+ ..
T Consensus 265 L~dai~~~d~~~al~~l~~Ll~~ge~p~---~iL~lL~~~f------RdLL~vK~~~~~~l~~~~~~v~~~l~~----qA 331 (620)
T PRK14954 265 VTDAIAENDAVKMLEVARFVIDNGYDEQ---DFLEKLIEHF------RNFLVLYNLRSTRLIERPESVKERYQQ----SA 331 (620)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCHH---HHHHHHHHHH------HHHHHHHhccccccccCCHHHHHHHHH----HH
Q ss_pred HhcCHHHHHHHhhccCchhH-------------HHHHHHHHhccCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 000275 1041 RAGGQETIEKNLKDIQGPAL-------------ALILERIKLNGASQ-VSMGPTSKSSSKVPKSASNGVSKHGNRAISSR 1106 (1739)
Q Consensus 1041 ~~~G~~~~~~~~~~Lk~~~~-------------~~i~~~l~ka~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1106 (1739)
+..+.+.+.+.+..+-..-. -.+..+.+-..+.. ..+.|..+++.+........+..++......+
T Consensus 332 ~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (620)
T PRK14954 332 GGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKP 411 (620)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhccCcccccCCCCCCCccccCCCCCCCCcccccccCCCCc
Q ss_pred cCCC----CCCCCCccccchhhhhhhhhhcccCCCChH-------HHHhhhhccccccCCChhHHHHHHHHHHHhhhHHH
Q 000275 1107 VIPT----KGARPESIMSVQDFAVQSQALLNVKDSNKE-------DRERMVVRRFKFEDPRIEQIQELENDMMKYFREDL 1175 (1739)
Q Consensus 1107 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~-------~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l 1175 (1739)
-.++ +...|+++..+........+......+... ..-....-+|+-.-+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 472 (620)
T PRK14954 412 EAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMN------------------- 472 (620)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCcccccHhhhhhccc-------------------
Q ss_pred HHhhcc--cCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHH--HHHhccCcchHHHHHHhhhhHHHHHHHHhcC-----
Q 000275 1176 HRRLLS--TDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRW--FVLQFCKSNTTCLLKVLEFLPELFDTLRDEG----- 1246 (1739)
Q Consensus 1176 ~~~lf~--~d~k~~l~al~~l~~~l~~~~~~~i~~lDlllkw--~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~----- 1246 (1739)
|+ ..++.+.+..+. ........+.....=+|...| ++-++...|-.+|--.|..++ +...+
T Consensus 473 ----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~ 542 (620)
T PRK14954 473 ----FTRNGSRKQPVQASSS-DAAQTGVFEGVAELEKLRMEWNQFLEHLLKKGQKVLVTHLRSCE-----LTSCSPHGVV 542 (620)
T ss_pred ----ccccchhccchhhccc-CcccCCCCCCcccHHHHHHHHHHHHHHHHHccchHHHHHHhcCc-----ccccCCCCeE
Q ss_pred ---------CcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHH
Q 000275 1247 ---------YSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGF 1317 (1739)
Q Consensus 1247 ---------y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~ 1317 (1739)
|.+--.|+ .+|+.+..-+-.--=.+|-++-+=-..-...|..--.|++|.+ ||.. |.+
T Consensus 543 ~~~~~~~~~~e~l~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~q~l~~----~n~~--------~~~ 609 (620)
T PRK14954 543 VMTCCRKFSYEELMQDA-ALLSKEIESFYGIPLKLQIRYDAARDACTREKSIFTLFRELSE----TNDV--------VKY 609 (620)
T ss_pred EEEecccccHHHHHhHH-HHHHHHHHHHhcCCceEEEEEehhhhhhhccCCHHHHHHHHHh----hCcH--------HHH
Q ss_pred HHHhhcCcc
Q 000275 1318 LIDHHGAEI 1326 (1739)
Q Consensus 1318 li~~~G~~v 1326 (1739)
|+++||..+
T Consensus 610 l~~~f~~~l 618 (620)
T PRK14954 610 LIKEFGGEL 618 (620)
T ss_pred HHHHhCCee
No 193
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=37.18 E-value=57 Score=34.39 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=37.0
Q ss_pred HHHhhhhcCChhhHHHHHHHHHHHHHHhcc--Cc---cchHhHHHHHhhhcCCCccHHHHHHHHHHHHHH
Q 000275 722 LYKIMKDHKNPKVLSEGILWMVSAVEDFGV--SH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (1739)
Q Consensus 722 l~~~~~~~KnPKv~~e~l~wl~~~i~eFG~--~~---l~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~l 786 (1739)
|...+....+|.+++-+|.=|++.++.+.- .. +..|..|- .+ +.|.|+.||-.|+..+..+
T Consensus 48 L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM---~L-m~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 48 LIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVM---EL-MNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHH---HH-TS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHH---HH-hcCCCHHHHHHHHHHHHHH
Confidence 333333344777777777777777765422 11 22344443 45 8999999999998877544
No 194
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.96 E-value=6.9e+02 Score=35.52 Aligned_cols=197 Identities=16% Similarity=0.193 Sum_probs=111.2
Q ss_pred ccChHHHHHHHHHHHH-hhhcCCCCCCCh-hHHHHHHHHHh---ccccHHHHHHHHHHH--------HHHHHHhcccccc
Q 000275 296 ATKWSERKDAVAELTK-LASTKRIAPGDF-TEVCRTLKKLI---TDVNIAVAVEAIQAI--------GNLARGLRTHFSG 362 (1739)
Q Consensus 296 s~KWkeRkEaLe~l~~-l~~~pKi~~~dy-~eL~~~Lkk~l---~DsNv~vv~~A~~~l--------~~lA~gLr~~F~~ 362 (1739)
.+.||-=++-+..+.. +...-....-=| +-++..+..+| +|+-+.+.-..+... -..|.-|..++..
T Consensus 165 g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~ 244 (1048)
T KOG2011|consen 165 GPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALNLSSHNDK 244 (1048)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3468888888888654 543222211111 12555555555 499998875544332 2333444443332
Q ss_pred hhhhhHHHHHHHhccCCHH-HHHHHHHHHHHHHHhcCCChhhhHHHHHHHh-h----cCCchhHHHHHHHHHHHHhhCCh
Q 000275 363 SSRFLLPVLLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSV-K----NKVPLVRSLTLNWVTFCIETSSK 436 (1739)
Q Consensus 363 y~~~~lp~lLeklKEKK~~-V~eA~~~aLda~~~~~~~~l~~~~e~i~~al-~----~KnP~vk~et~~~l~r~l~~~~~ 436 (1739)
-.+.+= +|+=|-+... =.+.+.....-.... ...++.++.+|.... = .=-|.+|..++..|.-|+...|.
T Consensus 245 tskQle---aEr~k~r~~rarle~Ll~~r~etqe~-~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~ 320 (1048)
T KOG2011|consen 245 TSKQLE---AERNKSRGNRARLESLLMLRKETQEQ-QDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPE 320 (1048)
T ss_pred HHHHHH---HHhcccccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccH
Confidence 222210 1111111110 112222222222222 123445666665433 2 34599999999999999998876
Q ss_pred hHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhc
Q 000275 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (1739)
Q Consensus 437 ~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~ 502 (1739)
.-+. ..++..+-=.|.|.+.+||..+..+|-.|+-. +..+..+...-..=|.+|.|+...
T Consensus 321 ~Fl~---dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~---~~~~~~L~lFtsRFK~RIVeMadr 380 (1048)
T KOG2011|consen 321 IFLS---DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK---DEDKDKLELFTSRFKDRIVEMADR 380 (1048)
T ss_pred HHhc---chHHHHhcceeecCccHHHHHHHHHHHHHHhc---cccchHHHHHHHHHHHHHHHHHhh
Confidence 5442 45788888999999999999988887777655 445555555555556788888743
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.42 E-value=1.1e+02 Score=42.42 Aligned_cols=67 Identities=21% Similarity=0.149 Sum_probs=45.9
Q ss_pred HHhhc-CCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh
Q 000275 410 TSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1739)
Q Consensus 410 ~al~~-KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~ 476 (1739)
+.|+. ..|.+|+=++.-|.|..++...+-....-..-...++..|.|+-|+||-||.-|||+|+...
T Consensus 606 e~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 606 EHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 34444 35777765555555555665544333222233456889999999999999999999999874
No 196
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=36.38 E-value=4.4e+02 Score=36.06 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=101.6
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhc
Q 000275 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK 376 (1739)
Q Consensus 297 ~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklK 376 (1739)
+.|.-+++-|....+..+..-....+|....+-++..+... -++...++..+-.||.--+-...-.-+.+++.+++.+.
T Consensus 222 kr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQ-eqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ld 300 (708)
T PF05804_consen 222 KRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQ-EQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLD 300 (708)
T ss_pred HHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHc
Confidence 44444444444433332222222456777666666666543 34444778899999998887777778899999999998
Q ss_pred cCCHHHHHHHHHHHHHHHHhc----CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhh-hhHHHHH
Q 000275 377 EKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK-DYVPICM 451 (1739)
Q Consensus 377 EKK~~V~eA~~~aLda~~~~~----~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k-~~~~~l~ 451 (1739)
.....+.-.+..+|.-+.-+. .+.=..+++.+...++.+|+.+...++..|. .|+..+. .-..+++ .++|.++
T Consensus 301 r~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~-NLSfd~~-~R~~mV~~GlIPkLv 378 (708)
T PF05804_consen 301 RENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLF-NLSFDPE-LRSQMVSLGLIPKLV 378 (708)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHH-HhCcCHH-HHHHHHHCCCcHHHH
Confidence 877666666666666553210 0111246677888889999988888887666 3332221 1123333 3889999
Q ss_pred hhhCCCCHHHHHH
Q 000275 452 ECLNDGTPEVRDA 464 (1739)
Q Consensus 452 k~l~Ds~~~VR~a 464 (1739)
..+.|.+ .|..
T Consensus 379 ~LL~d~~--~~~v 389 (708)
T PF05804_consen 379 ELLKDPN--FREV 389 (708)
T ss_pred HHhCCCc--hHHH
Confidence 9998753 4543
No 197
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=35.86 E-value=84 Score=37.84 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=61.7
Q ss_pred cCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH---HHHHhhcCCH
Q 000275 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP---LERSIEKLDD 490 (1739)
Q Consensus 414 ~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~---l~~~l~~Ld~ 490 (1739)
..++.++.-.+.|+.. .......+.+...-++|.++..++|.++++|-.|+.+|..++..+.... +. -.++++
T Consensus 90 K~~~~~~~~~l~w~v~--~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~--~tGl~~ 165 (282)
T PF10521_consen 90 KSNPGLASHVLSWIVL--SQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILR--RTGLFS 165 (282)
T ss_pred ccCCcccHHHHHHHHH--hcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHH--HcChHH
Confidence 4556777778888776 3444555556667799999999999999999999999999999988765 21 135565
Q ss_pred HHHHHHHHHHh
Q 000275 491 VRRNKLSEMIA 501 (1739)
Q Consensus 491 ~kk~KI~e~~~ 501 (1739)
.=...+..++-
T Consensus 166 v~~~al~~~L~ 176 (282)
T PF10521_consen 166 VFEDALFPCLY 176 (282)
T ss_pred HHHHHHHHHhh
Confidence 55555555543
No 198
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=35.58 E-value=1.1e+02 Score=30.38 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=53.7
Q ss_pred HHHHHHHhcChhhHhhhhhhh--HHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhc
Q 000275 918 TLGAVASAMGPAVEKSSKGVL--SDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTD 982 (1739)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l~--~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~ 982 (1739)
-+..||..+|+.+++.++.|. ..-+..+......+++.+.+.|..|...-|-+.-++.+..+|..
T Consensus 9 ~l~~ia~~iG~~Wk~Lar~LGls~~dI~~i~~~~~~~~eq~~~mL~~W~~r~g~~AT~~~L~~aL~~ 75 (86)
T cd08318 9 QITVFANKLGEDWKTLAPHLEMKDKEIRAIESDSEDIKMQAKQLLVAWQDREGSQATPETLITALNA 75 (86)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 355689999999999988654 45567777666789999999999999999988888888888874
No 199
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.33 E-value=1.2e+03 Score=31.08 Aligned_cols=13 Identities=15% Similarity=0.233 Sum_probs=9.6
Q ss_pred HHHHHhccCccch
Q 000275 744 SAVEDFGVSHLKL 756 (1739)
Q Consensus 744 ~~i~eFG~~~l~~ 756 (1739)
.+.+-||..+|.+
T Consensus 568 ~a~~if~~~~~~~ 580 (585)
T PRK14950 568 AAQNIFDAQIISV 580 (585)
T ss_pred HHHHHcCCeEEee
Confidence 4677888877765
No 200
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.30 E-value=8.6e+02 Score=29.19 Aligned_cols=78 Identities=23% Similarity=0.276 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHhc-c------cccchhhhhHHH
Q 000275 299 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKL-ITDVNIAVAVEAIQAIGNLARGLR-T------HFSGSSRFLLPV 370 (1739)
Q Consensus 299 WkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~-l~DsNv~vv~~A~~~l~~lA~gLr-~------~F~~y~~~~lp~ 370 (1739)
=-+|.-.++.+..++..-++ +|++.+..+... -.+.+..|...++..+..+.+.|. . .|..|.+.++.+
T Consensus 35 ~~~R~~ll~D~~al~~~g~~---~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 111 (324)
T PF11838_consen 35 PLDRAQLLDDLFALARAGRL---SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEP 111 (324)
T ss_dssp HHHHHHHHHHHHHHHHTTSS----HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45888888888888877554 488889988888 459999999999999999997777 1 277888899999
Q ss_pred HHHHhccCC
Q 000275 371 LLEKLKEKK 379 (1739)
Q Consensus 371 lLeklKEKK 379 (1739)
++++++=..
T Consensus 112 ~~~~l~~~~ 120 (324)
T PF11838_consen 112 LYERLGWDP 120 (324)
T ss_dssp HHHH--SSS
T ss_pred HHHHcCCCC
Confidence 999997554
No 201
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.27 E-value=3.3e+02 Score=40.42 Aligned_cols=150 Identities=20% Similarity=0.125 Sum_probs=102.5
Q ss_pred HHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHH---HHHHHHHHHHHh----c
Q 000275 326 VCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE---SLTQTLQAMHKA----G 397 (1739)
Q Consensus 326 L~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~e---A~~~aLda~~~~----~ 397 (1739)
+...|-.++. -....+-.+...|+..+-.+ |..|..|...- ..-+.+||.++.-.. ++..|+..+... -
T Consensus 52 ~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~--~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~ 128 (2067)
T KOG1822|consen 52 LEQQLISRLTNGAGPPTRKLISVAIARLISN-GDSFSLYSRLN--SCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMI 128 (2067)
T ss_pred HHHHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhhHHHHHH--HhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhh
Confidence 3444445554 55556668888999999888 88898886544 777777787443222 344455555443 1
Q ss_pred CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhH-HHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh
Q 000275 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1739)
Q Consensus 398 ~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~-~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~ 476 (1739)
..++++.+.-+...++.--..+|.+.+.-+......+.... ....++.+......++.|++--||-+|..|+..+..+-
T Consensus 129 ~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~ 208 (2067)
T KOG1822|consen 129 GRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLG 208 (2067)
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhc
Confidence 13355555555566666668889888888887776654222 22456788888888999999999999999999998876
Q ss_pred Ch
Q 000275 477 GM 478 (1739)
Q Consensus 477 Ge 478 (1739)
|.
T Consensus 209 ~~ 210 (2067)
T KOG1822|consen 209 GP 210 (2067)
T ss_pred Cc
Confidence 54
No 202
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=34.28 E-value=6.2e+02 Score=33.53 Aligned_cols=165 Identities=13% Similarity=0.041 Sum_probs=112.3
Q ss_pred ChhHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHhcccccch---hhhhHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 000275 322 DFTEVCRTLKKLIT----DVNIAVAVEAIQAIGNLARGLRTHFSGS---SRFLLPVLLEKLKEKKPTVAESLTQTLQAMH 394 (1739)
Q Consensus 322 dy~eL~~~Lkk~l~----DsNv~vv~~A~~~l~~lA~gLr~~F~~y---~~~~lp~lLeklKEKK~~V~eA~~~aLda~~ 394 (1739)
=||.+++.|+.+.+ +.-.+--+..-+=...++.=-|+.|.-| --..+.-+++...|||+.|-..+.+.|+.++
T Consensus 234 l~Ghv~kLlRH~eaa~Vve~ay~~~A~l~Qr~~li~EfYG~efqlfK~sn~~Tl~kil~~~pekk~~I~~~l~~~I~~v~ 313 (652)
T KOG2050|consen 234 LRGHVVKLLRHREAAYVVEYAYNDFATLEQRQYLIQEFYGDEFQLFKDSNDKTLDKILAEAPEKKASILRHLKAIITPVA 313 (652)
T ss_pred HhhhHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHhccCcccHHHHHHhChHhHHHHHHHHHHHhHHHh
Confidence 37888888888432 2222222333444555555566665444 3456778999999999999999999999999
Q ss_pred HhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhC--ChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000275 395 KAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS--SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1739)
Q Consensus 395 ~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~--~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l 472 (1739)
..+.+.+.-+.--+++++.+-++.-+.|.+..+...+... ++. =....++|+--+++-=|+.-..+|-..
T Consensus 314 eKg~v~~tivHk~mlEy~~~ade~e~~e~l~ll~elv~e~vHT~d--------GS~vAm~li~~a~aKeRK~IiK~~K~h 385 (652)
T KOG2050|consen 314 EKGSVDHTIVHKLMLEYLTIADEEEKSELLELLKELVPEMVHTRD--------GSRVAMKLIWHATAKERKLIIKNMKEH 385 (652)
T ss_pred hcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCc--------hHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 9866665555566779999999999999998888776531 211 123455666667777777666655433
Q ss_pred -----HHHhChhHHHHHhhcCCHHHHH
Q 000275 473 -----AKSVGMRPLERSIEKLDDVRRN 494 (1739)
Q Consensus 473 -----~k~~Ge~~l~~~l~~Ld~~kk~ 494 (1739)
+-..|-..+...++-+||.++.
T Consensus 386 ~~K~A~~~yGh~vlia~ldc~DDT~l~ 412 (652)
T KOG2050|consen 386 VEKIANDEYGHLVLIALLDCTDDTKLL 412 (652)
T ss_pred HHHHHhhccCceehhhhhcccchHHHH
Confidence 3346777788888889886643
No 203
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=34.20 E-value=1.7e+02 Score=35.72 Aligned_cols=110 Identities=13% Similarity=0.101 Sum_probs=60.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh------------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000275 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1739)
Q Consensus 370 ~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~------------~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~ 437 (1739)
.+|.+. -.+..+++.+...++-+... .-+.. +....+...+++..+.+...++..|+..+...+..
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~-~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~ 139 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSD-DPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKR 139 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH--SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT-
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 444444 44555555555555555443 11111 13344555777889999999999999999876544
Q ss_pred HHH---HhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000275 438 AVL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1739)
Q Consensus 438 ~~~---~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l 481 (1739)
... ..+..++..+...++.++.++...|..+|+.+++.=.+|.+
T Consensus 140 ~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~ 186 (312)
T PF03224_consen 140 SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQV 186 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHH
Confidence 332 33444455555555557778889999999998876655543
No 204
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=32.88 E-value=5.1e+02 Score=33.09 Aligned_cols=179 Identities=13% Similarity=0.102 Sum_probs=111.5
Q ss_pred hhhhhhccChHHHHHHHHHHHHhh-hcCCCCCCChhHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccc-hhhh
Q 000275 290 FWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSG-SSRF 366 (1739)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~-~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~l~~lA~gLr~~F~~-y~~~ 366 (1739)
+.+.+.|.+=.||--..+-|..+- +.+...+.--..+...|-..+. +.+.+.+...+++++.+.+|...+... |...
T Consensus 138 Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~f 217 (409)
T PF01603_consen 138 LLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQF 217 (409)
T ss_dssp HHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHH
Confidence 445568899999987776677654 3444433223334444444454 789999999999999999997755433 2222
Q ss_pred hHHHHHHHhccCCHHH-HHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhh
Q 000275 367 LLPVLLEKLKEKKPTV-AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1739)
Q Consensus 367 ~lp~lLeklKEKK~~V-~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~ 445 (1739)
+...++=-.|-+--.. -..+..|+..++.....-...++..++...=.-|++=..--++.+...++..++....++...
T Consensus 218 l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~ 297 (409)
T PF01603_consen 218 LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVP 297 (409)
T ss_dssp HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2233333334443333 467888888888763222334556666555556666666677888888888887777788888
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHH
Q 000275 446 YVPICMECLNDGTPEVRDAAFSV 468 (1739)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aa~~~ 468 (1739)
+...+.+|++-..-.|-+.|...
T Consensus 298 lf~~la~ci~S~h~qVAErAl~~ 320 (409)
T PF01603_consen 298 LFKRLAKCISSPHFQVAERALYF 320 (409)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHGG
T ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Confidence 89999999999999998887643
No 205
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=32.74 E-value=4.6e+02 Score=34.82 Aligned_cols=126 Identities=15% Similarity=0.191 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh
Q 000275 324 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403 (1739)
Q Consensus 324 ~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~ 403 (1739)
.+-+.++-.++.|-.+.|-..|++-|-.+++.=. .|+.-+.-.|..-|..--+..++++.++|..++.. ....
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~---d~k~ 130 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ---DPKG 130 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc---CcHH
Confidence 4567788888899999999999999999998732 36666666677777788889999999999999885 3333
Q ss_pred hHHHHHHHhh---cCCchhHHHHHHHHHHHHhhCChhHHH--Hhh-hhhHHHHHhhhCC
Q 000275 404 VVEDVKTSVK---NKVPLVRSLTLNWVTFCIETSSKAAVL--KVH-KDYVPICMECLND 456 (1739)
Q Consensus 404 ~~e~i~~al~---~KnP~vk~et~~~l~r~l~~~~~~~~~--~~~-k~~~~~l~k~l~D 456 (1739)
.+..+...+. +-...+|..++.||...+...+...+. +.. .-++..+-+.|.|
T Consensus 131 tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 131 TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 3444443332 456789999999999888765444333 222 3355666788887
No 206
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=32.71 E-value=62 Score=34.28 Aligned_cols=41 Identities=32% Similarity=0.293 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhhhhhhcCCCChHHHHHHHHHHHHhhChHHHhhcCCCCCCChhHHHHHHHHHHH
Q 000275 1641 LVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVK 1704 (1739)
Q Consensus 1641 LvmKCLwK~~k~l~~~~~~l~~d~iL~~ih~Fl~~~p~~~wr~r~~~~D~PlRtvKTiLh~l~k 1704 (1739)
=||+-||... |.+ ..+||.++..- | |--.-||||+|..|||
T Consensus 10 eVM~ilW~~~---~~t---------~~eI~~~l~~~-------~----ews~sTV~TLl~RL~K 50 (123)
T COG3682 10 EVMEILWSRG---PAT---------VREIIEELPAD-------R----EWSYSTVKTLLNRLVK 50 (123)
T ss_pred HHHHHHHHcC---Ccc---------HHHHHHHHhhc-------c----cccHHHHHHHHHHHHh
Confidence 4899999885 334 34778887633 1 4455799999999998
No 207
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=32.01 E-value=1e+02 Score=30.57 Aligned_cols=75 Identities=17% Similarity=0.290 Sum_probs=59.6
Q ss_pred HHHHHHHhcChhhHhhhhhhhH--HHHHHh-ccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHH
Q 000275 918 TLGAVASAMGPAVEKSSKGVLS--DILKCL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLF 994 (1739)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l~~--~il~~l-~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l 994 (1739)
.+..||..+|+...+.++-+.- .=+..+ .+...++.+-+.+.|..|....|-+.-+..+..+|.. + +|.+++
T Consensus 6 ~l~~ia~~LG~dW~~LA~eLg~s~~dI~~i~~e~p~~~~~q~~~lL~~W~~r~g~~At~~~L~~aL~~--i---~R~DIv 80 (84)
T cd08803 6 RMAIVADHLGLSWTELARELNFSVDEINQIRVENPNSLIAQSFMLLKKWVTRDGKNATTDALTSVLTK--I---NRIDIV 80 (84)
T ss_pred HHHHHHHHhhccHHHHHHHcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHH--C---CcHHHH
Confidence 4667899999999998886553 335566 5557778899999999999999988888899999983 3 588887
Q ss_pred HHH
Q 000275 995 DWL 997 (1739)
Q Consensus 995 ~wl 997 (1739)
..|
T Consensus 81 ~~~ 83 (84)
T cd08803 81 TLL 83 (84)
T ss_pred Hhc
Confidence 654
No 208
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=31.95 E-value=1.6e+02 Score=28.77 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=57.4
Q ss_pred HHHHHHHhcChhhHhhhhhhhHH--HHHHhc-cCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHH
Q 000275 918 TLGAVASAMGPAVEKSSKGVLSD--ILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLF 994 (1739)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l~~~--il~~l~-D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l 994 (1739)
.+..||.-+|+...+.++.+.-+ =+..+. |+...+.+.+.+.|..|...-|-..-+..+.++|..- +|.++.
T Consensus 6 ~l~~ia~~lG~dW~~LAr~Lg~~~~dI~~i~~~~~~~~~eq~~~mL~~W~~r~g~~at~~~L~~AL~~i-----~r~Di~ 80 (84)
T cd08317 6 RLADISNLLGSDWPQLARELGVSETDIDLIKAENPNSLAQQAQAMLKLWLEREGKKATGNSLEKALKKI-----GRDDIV 80 (84)
T ss_pred hHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHc-----ChHHHH
Confidence 35678899999999988876522 355555 5666789999999999999999877788899999843 578776
Q ss_pred HH
Q 000275 995 DW 996 (1739)
Q Consensus 995 ~w 996 (1739)
.-
T Consensus 81 ~~ 82 (84)
T cd08317 81 EK 82 (84)
T ss_pred HH
Confidence 53
No 209
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=31.41 E-value=1.5e+02 Score=33.96 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHH
Q 000275 913 MATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKD 992 (1739)
Q Consensus 913 ~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e 992 (1739)
..++++++.+-..+|+.+.++...++-.+-+.=.+..-..|.++-.|+.+.+.+.|.+.++..+.=-+.++......|.=
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~~raW 97 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQPGRAW 97 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCcccch
Confidence 46778888888888877555444444433333333445789999999999999999999987544333322223445666
Q ss_pred HHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHH
Q 000275 993 LFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSD 1027 (1739)
Q Consensus 993 ~l~wl~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~d 1027 (1739)
+|--|.++..+. .-.-....+.|+...+..+..+
T Consensus 98 LLPlLr~~i~~~-~L~fF~~~~lPla~~~~~~~~~ 131 (198)
T PF08161_consen 98 LLPLLRDHIRNA-SLSFFVEEFLPLARRLRQKAQK 131 (198)
T ss_pred hHHHHHHhccCC-ChHHHHHHHHHHHHHHHHHHHH
Confidence 666666554332 1223455566665555444433
No 210
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=30.47 E-value=5.4e+02 Score=34.80 Aligned_cols=186 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhhcCCCCCC-ChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccc-ccchhhhh
Q 000275 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFL 367 (1739)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~-dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~-F~~y~~~~ 367 (1739)
|.+.|-.+.=+++-+-++.|-+++ |.+... -+..+...|..-+ .|-++|-..+-|+-.|+.++-.. |.......
T Consensus 278 fLD~l~~kdn~qKs~Flk~Ls~~i--p~fp~rv~~~kiLP~L~~el--~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~ 353 (700)
T KOG2137|consen 278 FLDDLPQKDNSQKSSFLKGLSKLI--PTFPARVLFQKILPTLVAEL--VNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPA 353 (700)
T ss_pred hcccccccCcHHHHHHHHHHHHhh--ccCCHHHHHHhhhhHHHHHh--ccccccccccchhhhhhhccchhhhhhhhhHH
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh
Q 000275 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1739)
Q Consensus 368 lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~----l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~ 443 (1739)
+-+++..-.-|+..+. +.+=+|.+... ++ .+.|++-|..++++-..++...++.-+.-..+...-....+.+
T Consensus 354 l~pi~~~~~~~~~~l~--i~e~mdlL~~K--t~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~i 429 (700)
T KOG2137|consen 354 LKPIYSASDPKQALLF--ILENMDLLKEK--TPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAI 429 (700)
T ss_pred HHHHhccCCcccchhh--HHhhHHHHHhh--CChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHH
Q ss_pred hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHh
Q 000275 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485 (1739)
Q Consensus 444 k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~l~~~l 485 (1739)
-.-+..+ ++..++..||-.+..|++.+++.+.--.+...+
T Consensus 430 lP~l~~l--~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~ 469 (700)
T KOG2137|consen 430 LPRLKNL--AFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDEL 469 (700)
T ss_pred HHHhhcc--hhcccchHHHHHHHHHHHHHHHHHHHHHhHHHH
No 211
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=30.30 E-value=2e+02 Score=34.69 Aligned_cols=127 Identities=14% Similarity=0.205 Sum_probs=74.2
Q ss_pred hhhHHHHHHh-ccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhc---ccC-CcchHHHHHHHHHHHhccCCC---C
Q 000275 936 GVLSDILKCL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTD---AKL-GAEGRKDLFDWLSKQLTGLSG---F 1007 (1739)
Q Consensus 936 ~l~~~il~~l-~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~---~~~-~p~~r~e~l~wl~~~l~~~~~---~ 1007 (1739)
+.+--|++.| -+...++|+||+++|. ..-|+-.++|++.-.+.. .+. |-+ +-.++-.+.-.|-..+. .
T Consensus 197 ~YF~kvisal~dEs~~~~r~aAl~sLr---~dsGlhQLvPYFi~f~~eqit~Nl~nl~-~LtTv~~m~~sLL~N~~iFvd 272 (450)
T COG5095 197 MYFDKVISALLDESDEQTRDAALESLR---NDSGLHQLVPYFIHFFNEQITKNLKNLE-KLTTVVMMYSSLLKNKYIFVD 272 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc---cCccHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHhcCCceeec
Confidence 3444444444 4577889999888764 567899999987777652 222 111 11112222222222222 2
Q ss_pred cchhhhhhHHhhhcCC-----CCHH-----HHHHHHHHHHHHHHhcCHHHHHHHhhccCch-hHHHHHHHHHhcc
Q 000275 1008 PDAAHLLKPASIAMTD-----KSSD-----VRKAAEACIVEILRAGGQETIEKNLKDIQGP-ALALILERIKLNG 1071 (1739)
Q Consensus 1008 ~~~~~~~~p~~~~L~D-----r~~d-----VRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~-~~~~i~~~l~ka~ 1071 (1739)
|-..++++.++.||-- ..-| +|+-|..+|+++...+|. .-+.|||- .....++++|..+
T Consensus 273 PY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~-----~YktLkPRvtrTllKafLD~~k 342 (450)
T COG5095 273 PYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSS-----SYKTLKPRVTRTLLKAFLDREK 342 (450)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhH-----hhhhhchHHHHHHHHHHHhccc
Confidence 3344455557777722 1223 999999999999887653 45677775 4556777887755
No 212
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=29.81 E-value=2.3e+02 Score=35.26 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.8
Q ss_pred HhhchhhhcccChhHHHHHHHHHHHHHH
Q 000275 170 LKMLPELFDHQDQNVRASSKGLTLELCR 197 (1739)
Q Consensus 170 lk~l~~lf~~~dk~VR~ea~~L~velyr 197 (1739)
=.|.|.|+.|.|..||+++..++.+++-
T Consensus 240 p~WAP~LL~y~d~~VR~~Te~fL~~~lF 267 (337)
T PF12030_consen 240 PDWAPGLLGYPDRSVRNGTEDFLQELLF 267 (337)
T ss_pred cccchHhhCCCchhHHHHHHHHHHHHhC
Confidence 3689999999999999999999988653
No 213
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=29.30 E-value=96 Score=29.42 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=54.4
Q ss_pred HHHHHHhcChhhHhhhhhhh--HHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhc
Q 000275 919 LGAVASAMGPAVEKSSKGVL--SDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTD 982 (1739)
Q Consensus 919 i~~lA~amG~~~~k~~k~l~--~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~ 982 (1739)
+..||..+|...++.++.+. ..-+..+..+.+.+++.+.+.|..|...-|-+.-++.+..+|..
T Consensus 2 ~~~ia~~lg~~W~~la~~Lgl~~~~I~~i~~~~~~~~~~~~~mL~~W~~~~~~~at~~~L~~aL~~ 67 (79)
T cd01670 2 LDKLAKKLGKDWKKLARKLGLSDGEIDQIEEDNPRVREQAYQLLLKWEEREGDNATVGNLIEALRE 67 (79)
T ss_pred HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHhCCCHHHHHHHHHHHHHhccCcCcHHHHHHHHHHH
Confidence 45788899999988887764 66688888888889999999999999999877778888889884
No 214
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=29.30 E-value=3.7e+02 Score=35.27 Aligned_cols=109 Identities=13% Similarity=0.128 Sum_probs=83.1
Q ss_pred HHHHhc-ChhhHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcch--hhhhH--HHHHHHhcccCCcchHHHHHH
Q 000275 921 AVASAM-GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVP--YVTTALTDAKLGAEGRKDLFD 995 (1739)
Q Consensus 921 ~lA~am-G~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl--~~~~~--~i~~~L~~~~~~p~~r~e~l~ 995 (1739)
+||.|= ...+++....++|++|.+|+-.-..||..+++.|..+-..+.- +--+| .+.+-.++++.++..|.=.+-
T Consensus 7 RlalAdtD~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsli 86 (501)
T PF13001_consen 7 RLALADTDEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLI 86 (501)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHH
Confidence 455555 5678889999999999999999999999999999998887753 22334 566666776667889999999
Q ss_pred HHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHH
Q 000275 996 WLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRK 1030 (1739)
Q Consensus 996 wl~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRk 1030 (1739)
|+...++.+.. .+-..+++.++.++..+..+-+.
T Consensus 87 yi~~g~~Rl~~-~e~~~llP~ll~~is~~~~~~~~ 120 (501)
T PF13001_consen 87 YIEMGFDRLDD-EERRELLPSLLKGISKKPKQHQD 120 (501)
T ss_pred HHHHhhhcCCH-HHHHHHHHHHHHhhccCchhhhH
Confidence 99999887752 34455666688888766654443
No 215
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=29.13 E-value=7.9e+02 Score=31.86 Aligned_cols=159 Identities=11% Similarity=0.196 Sum_probs=117.0
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhh-----h
Q 000275 653 SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM-----K 727 (1739)
Q Consensus 653 kesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~-----~ 727 (1739)
+-++-......|+++.++.. .+.++..+...|+..|+.-.+=.++...+-+++..++......-++..++..+ .
T Consensus 187 ~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~ 265 (464)
T PF11864_consen 187 STSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQ 265 (464)
T ss_pred ccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCcc
Confidence 44566677888888887776 57888999988888888887777888999999999998777777778888877 2
Q ss_pred hcCChhhHHHHHHHHHHHHHHh---ccCccchHh--HHHHHhhhcCCCccHHHHHHHHHHHHHHHhhh-CchhHhhhhcc
Q 000275 728 DHKNPKVLSEGILWMVSAVEDF---GVSHLKLKD--LIDFCKDTGLQSSAAATRNATIKLLGALHKFV-GPDIKGFLADV 801 (1739)
Q Consensus 728 ~~KnPKv~~e~l~wl~~~i~eF---G~~~l~~K~--li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~-G~~l~~~l~dl 801 (1739)
...++.+.-+++..+..++-.. |+..++..+ ++..+..+ +...++.|=.. .+..++..+ |.--+.+.+..
T Consensus 266 ~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~a-l~~~~~~v~~e---Il~~i~~ll~~~~~~~l~~~~ 341 (464)
T PF11864_consen 266 NKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNA-LKSNSPRVDYE---ILLLINRLLDGKYGRELSEED 341 (464)
T ss_pred ccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHH-HhCCCCeehHH---HHHHHHHHHhHhhhhhhcccC
Confidence 3467888999999999998866 444455666 99999998 99888876554 444555555 55555544333
Q ss_pred hHHHHHHHHHHHhcC
Q 000275 802 KPALLSALDAEYEKN 816 (1739)
Q Consensus 802 kpall~~ie~EF~K~ 816 (1739)
=..++..++.=+++.
T Consensus 342 W~~~~~i~~~~~~~~ 356 (464)
T PF11864_consen 342 WDIILDIIEEIFDKI 356 (464)
T ss_pred chHHHHHHHHHHhhc
Confidence 335666666656665
No 216
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=28.31 E-value=6.1e+02 Score=30.46 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=62.8
Q ss_pred HHHHHHHhhccCccchH-------HHHHhhh-ccCChhhHhHHHHHHHHHHHhhcCcc--cCccchHHHHHHHhccCChh
Q 000275 1277 RELTKQIVNFYSATKTL-------PYILEGL-RSKNNRTRIECVDLVGFLIDHHGAEI--SGQLKSLQIVASLTAERDGE 1346 (1739)
Q Consensus 1277 r~i~~~~~~vyp~skvf-------~~l~~gl-ksKN~r~R~Ecl~el~~li~~~G~~v--~~~~Kal~~ia~~i~drD~~ 1346 (1739)
-.+++-+|+++|+||.+ ..+++-+ .+.....++.||+-|-+++-.+=.+. -.....+..|+.++.++..
T Consensus 112 L~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~- 190 (257)
T PF08045_consen 112 LRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKST- 190 (257)
T ss_pred HHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccc-
Confidence 36889999999999865 4667777 55678889999999999886665544 2223457889999976643
Q ss_pred HHHHHHHHHHHHHHHhchh
Q 000275 1347 IRKAALNTLATGYKILGED 1365 (1739)
Q Consensus 1347 VR~AALn~l~~~y~~~Gd~ 1365 (1739)
-|+-=+-|+.-.|+|+++.
T Consensus 191 ~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 191 DRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred cHHHhHHHHHHHHHHHccc
Confidence 2333366676667766654
No 217
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.82 E-value=1.8e+02 Score=37.72 Aligned_cols=145 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhhhHhHHHHHHH-----HHHhccCc-chHHHHHHhhh-hHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHH
Q 000275 1203 KDIIEVLDILLRW-----FVLQFCKS-NTTCLLKVLEF-LPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREK 1275 (1739)
Q Consensus 1203 ~~~i~~lDlllkw-----~tlr~~dt-N~~vl~k~Le~-l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~ 1275 (1739)
.++....|-++|| +.+-|+-| |-.+...+|.| +. |..|-||..
T Consensus 522 ~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avs------------------------------D~nDDVrRA 571 (926)
T COG5116 522 NELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVS------------------------------DGNDDVRRA 571 (926)
T ss_pred HHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecc------------------------------cCchHHHHH
Q ss_pred HHHHHHHHhhccCccchHHHHHhhh-ccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCChhHHHHHHHH
Q 000275 1276 MRELTKQIVNFYSATKTLPYILEGL-RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNT 1354 (1739)
Q Consensus 1276 vr~i~~~~~~vyp~skvf~~l~~gl-ksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~ 1354 (1739)
+++-.=--.|-..-..+-.+|-| +|-|.-+|...--.||-.....|.++ |+..+-.+.-|.+.-||++|.-+
T Consensus 572 --AViAlGfvc~~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-----a~diL~~L~~D~~dfVRQ~AmIa 644 (926)
T COG5116 572 --AVIALGFVCCDDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-----ATDILEALMYDTNDFVRQSAMIA 644 (926)
T ss_pred --HHHheeeeEecCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-----HHHHHHHHhhCcHHHHHHHHHHH
Q ss_pred HHHHHHHhchhHHHHhccCCHHHHhhHHHH
Q 000275 1355 LATGYKILGEDIWRYVGKLTDAQKSMLDDR 1384 (1739)
Q Consensus 1355 l~~~y~~~Gd~v~k~~g~ls~k~~s~Leer 1384 (1739)
++-...-+.+++---+..+..+-.+.|.++
T Consensus 645 ~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 645 VGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHhhcCcccChhHHHHHHHHHHHHhhh
No 218
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.48 E-value=2.2e+02 Score=38.53 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=42.6
Q ss_pred CchhHHHHHHHHHHHHHhhCCC-ccChhHHHhhchhhhcccChhHHHHHHHHHHHHH
Q 000275 141 VAKAVVPAIDVMFQALSEFGAK-IIPPKRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1739)
Q Consensus 141 ~PKvv~a~i~~l~~~l~~FG~k-~v~~K~ilk~l~~lf~~~dk~VR~ea~~L~vely 196 (1739)
|+.|.++++.++ ..||.. .....+|+-.|...+.++|-.||+.|.-.+..+-
T Consensus 479 n~ivRaaAv~al----aKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 479 NAIVRAAAVSAL----AKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhHHHHHHHH----HHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 568889998877 567763 4566778899999999999999999998887776
No 219
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=27.32 E-value=74 Score=35.28 Aligned_cols=90 Identities=13% Similarity=0.241 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHHHHHhhcchhhHHHHHHHHhhcc-----CchhHHHHHHHHHHHHH-hhCC-CccChhHHHhhchhhhcc
Q 000275 107 PKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNK-----VAKAVVPAIDVMFQALS-EFGA-KIIPPKRILKMLPELFDH 179 (1739)
Q Consensus 107 ~~tk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K-----~PKvv~a~i~~l~~~l~-~FG~-k~v~~K~ilk~l~~lf~~ 179 (1739)
...+.....-+-.|++.++.+..++.|.....+. ...+..+|+.+++.++. ..|. .++.-...+..+-..+.+
T Consensus 90 v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s 169 (187)
T PF06371_consen 90 VSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS 169 (187)
T ss_dssp HHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T
T ss_pred HHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC
Confidence 3344455566667777777776666665554443 34588999999988775 5777 456666778888888999
Q ss_pred cChhHHHHHHHHHHHHH
Q 000275 180 QDQNVRASSKGLTLELC 196 (1739)
Q Consensus 180 ~dk~VR~ea~~L~vely 196 (1739)
.+..+|..+..++..++
T Consensus 170 ~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 170 PNIKTRKLALEILAALC 186 (187)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998887664
No 220
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.96 E-value=1.2e+02 Score=34.92 Aligned_cols=100 Identities=17% Similarity=0.261 Sum_probs=80.7
Q ss_pred CcccccccCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchhhHhHHHHHHHHHHHHHHh
Q 000275 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 925 (1739)
Q Consensus 846 prvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~~lA~a 925 (1739)
...|+..-++ .|.+.|.+.+.=.|-=|-+-+..+|-...++|-|-+ -.|+..||.-|.-.|+-+...+|++++++...
T Consensus 108 e~Ldy~~yLp-~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVL-PqLI~plK~al~trd~ev~~~~Lkvlq~lv~~ 185 (262)
T KOG3961|consen 108 EKLDYCPYLP-LFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVL-PQLILPLKAALVTRDDEVICRTLKVLQQLVVS 185 (262)
T ss_pred HhccchHHHH-HHhhhhhhcCCCcchhhhhcHHHHHHhccccccccc-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 3456666654 588999999999999999999898887778999987 99999999999999999999999999998765
Q ss_pred c---ChhhHhhhhhhhHHHHHHhccC
Q 000275 926 M---GPAVEKSSKGVLSDILKCLGDN 948 (1739)
Q Consensus 926 m---G~~~~k~~k~l~~~il~~l~D~ 948 (1739)
. |+..-+|-|.++|. +..++.+
T Consensus 186 ~~~vG~aLVPfYRQlLp~-~n~~k~~ 210 (262)
T KOG3961|consen 186 VGCVGAALVPFYRQLLPV-LNTFKNS 210 (262)
T ss_pred ccccchhhhhHHHHhhhh-hhhhccc
Confidence 3 67777888888774 3444433
No 221
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=26.53 E-value=2.7e+02 Score=27.54 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=52.1
Q ss_pred HHHHHHHhcChhhHhhhhhhh--HHHHHHh-ccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhc
Q 000275 918 TLGAVASAMGPAVEKSSKGVL--SDILKCL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTD 982 (1739)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l~--~~il~~l-~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~ 982 (1739)
++..|+..+|+..++.++.+. .+-+..+ .|+-..+++.+.+.|..|...-|-+.-+..+..+|..
T Consensus 4 ~f~~i~~~lG~~Wk~laR~LGlse~~Id~i~~~~~~~~~eq~~~mL~~W~~~~g~~At~~~L~~aL~~ 71 (86)
T cd08306 4 AFDVICENVGRDWRKLARKLGLSETKIESIEEAHPRNLREQVRQSLREWKKIKKKEAKVADLIKALRD 71 (86)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhHCcchHHHHHHHHHHH
Confidence 566789999999999887644 4445544 4666789999999999999999988888888888884
No 222
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=26.43 E-value=2.8e+02 Score=30.46 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=74.8
Q ss_pred CChHHHHHHHHHHHHHHHHcccCCCCCC-ccchHHHHhh--------hcchhhHhHHHHHHHHHHHHHHhcChhhHhhhh
Q 000275 865 PDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRG--------RLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1739)
Q Consensus 865 ~~WK~RkEaLe~v~~il~~ankrI~p~~-~geL~~aLk~--------Rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k 935 (1739)
.+++.|.=|||-++.+++.+...+.... ..++...+|. -+...+..+...+++++..+...++...+.-.-
T Consensus 34 ~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele 113 (168)
T PF12783_consen 34 HDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE 113 (168)
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999987655555220 1234444433 333445888899999999999999999998888
Q ss_pred hhhHHHHHHhccCch---hHHHHHHHHHHHHHHh
Q 000275 936 GVLSDILKCLGDNKK---HMRECTLTVLDAWLAA 966 (1739)
Q Consensus 936 ~l~~~il~~l~D~K~---~vR~aa~~alda~~~~ 966 (1739)
.++..++..+-+++. .-|..+++++..++..
T Consensus 114 ~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 114 VFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 899999885555443 6777788888777653
No 223
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=25.76 E-value=1.5e+02 Score=38.06 Aligned_cols=125 Identities=22% Similarity=0.168 Sum_probs=79.9
Q ss_pred HHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCC-hHHHHHHHHHHHHHHhhccCccchHHHHHhhh-ccCCh
Q 000275 1228 LLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHN-IEKVREKMRELTKQIVNFYSATKTLPYILEGL-RSKNN 1305 (1739)
Q Consensus 1228 l~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~-k~~vR~~vr~i~~~~~~vyp~skvf~~l~~gl-ksKN~ 1305 (1739)
+.--|++|...++.-...=-.+.+|.+...-..|----=|- -.=-|+.++.+-+.= -+++..|.+-+ +|.++
T Consensus 295 L~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~------~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 295 LTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKN------YELLKILIHLLETSVDP 368 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcc------hHHHHHHHHHHhcCCCc
Confidence 33445566665555555555577888877766664322332 222345544443221 12233334444 46778
Q ss_pred hhHhHHHHHHHHHHHhh--cCcccCccchHHHHHHHhccCChhHHHHHHHHHHHH
Q 000275 1306 RTRIECVDLVGFLIDHH--GAEISGQLKSLQIVASLTAERDGEIRKAALNTLATG 1358 (1739)
Q Consensus 1306 r~R~Ecl~el~~li~~~--G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~ 1358 (1739)
.+=+=++.-||.++..| |-.+....++=..|=.++++.|+.||.-||.|+...
T Consensus 369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 88777778899999998 666655555557789999999999999999999844
No 224
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=25.62 E-value=6.1e+02 Score=32.31 Aligned_cols=178 Identities=14% Similarity=0.159 Sum_probs=112.2
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhh---cCCCCCCChhHHHHHH-------HHHhccccHHHHHHHHHHHHHHHHHhc--
Q 000275 290 FWEGVKATKWSERKDAVAELTKLAS---TKRIAPGDFTEVCRTL-------KKLITDVNIAVAVEAIQAIGNLARGLR-- 357 (1739)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~---~pKi~~~dy~eL~~~L-------kk~l~DsNv~vv~~A~~~l~~lA~gLr-- 357 (1739)
.....-++-|-+|..+|-++..+.- ..++ |.++...+ +.-|.|--.-+-+..++.|..|-.-+=
T Consensus 398 leaealcktppdqedallaaikkfgeePiaki----kedhfenlkagieeiReaIddisaekfqasfelikciiahlike 473 (666)
T KOG4825|consen 398 LEAEALCKTPPDQEDALLAAIKKFGEEPIAKI----KEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKE 473 (666)
T ss_pred HHHHHHhcCCccchhhHHHHHHHhccCcccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 4455667899999999988766432 3344 44444443 444556555666677777777666654
Q ss_pred ccccch-----hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-CCChhhhHHHHHHHhh-cCCchhHHHHHHHHHHH
Q 000275 358 THFSGS-----SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFC 430 (1739)
Q Consensus 358 ~~F~~y-----~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~-~~~l~~~~e~i~~al~-~KnP~vk~et~~~l~r~ 430 (1739)
..|..| ...-++.++-+-+|--.-++.-+.+.+..++..- ..++.-+-+.+...++ +|-|.+-..-..-|+|.
T Consensus 474 hkfskledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarl 553 (666)
T KOG4825|consen 474 HKFSKLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARL 553 (666)
T ss_pred hhhhhhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHH
Confidence 237776 2334677888888887777777777777666541 1223333355555665 78899988888889999
Q ss_pred HhhCCh--hHHHHhhhh-hHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000275 431 IETSSK--AAVLKVHKD-YVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1739)
Q Consensus 431 l~~~~~--~~~~~~~k~-~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k 474 (1739)
++...+ +.+. .. ....-+...+.+--++|++|+..+..+.+
T Consensus 554 lkdlgkGragfi---ediakkfgVpaeehglndkreaafaiicdmtr 597 (666)
T KOG4825|consen 554 LKDLGKGRAGFI---EDIAKKFGVPAEEHGLNDKREAAFAIICDMTR 597 (666)
T ss_pred HHhcCCCccchh---HHHHHHhCCCccccchhHHHHhHhhhhhhhcc
Confidence 876433 2221 11 11223445666777899999877665543
No 225
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=25.59 E-value=1.3e+03 Score=28.12 Aligned_cols=155 Identities=16% Similarity=0.145 Sum_probs=90.4
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhc-CCCCC----CChhHHHHHHHHHhccccHHHHHHHHHHHHHHHH--Hhccccc
Q 000275 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAP----GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR--GLRTHFS 361 (1739)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~-pKi~~----~dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~--gLr~~F~ 361 (1739)
-|..-+....|.-..-++--|..++.. ++-.. +.+..+++.|+..+..++..++..|++|++.|.+ ..|.-|-
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence 477777888999999999998887643 33322 3456667777776666777788999999999974 3444453
Q ss_pred chhhhhHHHHHHHh----ccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000275 362 GSSRFLLPVLLEKL----KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1739)
Q Consensus 362 ~y~~~~lp~lLekl----KEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~ 437 (1739)
. ...++.++.-+ +.++....+-.=+++-.++.- |+ -+++...|.+++ ...-|.+.++...+.
T Consensus 189 ~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL---SF---~~~~~~~~~~~~------~i~~L~~i~~~~~KE 254 (312)
T PF03224_consen 189 K--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL---SF---EPEIAEELNKKY------LIPLLADILKDSIKE 254 (312)
T ss_dssp T--HHHHHHHHHHHH---------HHHHHHHHHHHHHHH---TT---SHHHHHHHHTTS------HHHHHHHHHHH--SH
T ss_pred h--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH---hc---CHHHHHHHhccc------hHHHHHHHHHhcccc
Confidence 3 55566666666 345555566555555555542 33 245666666666 455777788777663
Q ss_pred HHHHhhhhhHHHHHhhhCCCCHH
Q 000275 438 AVLKVHKDYVPICMECLNDGTPE 460 (1739)
Q Consensus 438 ~~~~~~k~~~~~l~k~l~Ds~~~ 460 (1739)
|.++-++.++..+++-....
T Consensus 255 ---KvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 255 ---KVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp ---HHHHHHHHHHHHTTSSSSTT
T ss_pred ---hHHHHHHHHHHHHHhccHHH
Confidence 44555677777777666554
No 226
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.37 E-value=4.5e+02 Score=35.41 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=82.2
Q ss_pred ChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccch-hhhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhcCC
Q 000275 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCL 399 (1739)
Q Consensus 322 dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y-~~~~lp~lLeklK-EKK~~V~eA~~~aLda~~~~~~~ 399 (1739)
-|..-+..|.+.|++--.|+--+|+..+..||.. .|..- ++--...++.-+| |+--+||.-+.+-|-++++. .
T Consensus 326 ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~--~ 400 (938)
T KOG1077|consen 326 LLSRAVNQLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV--S 400 (938)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch--h
Confidence 3777778888888877777778888888888876 44422 4555778889999 99999999888888888775 4
Q ss_pred ChhhhHHHHHHHhhcCCchhHHHHHHHHH
Q 000275 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1739)
Q Consensus 400 ~l~~~~e~i~~al~~KnP~vk~et~~~l~ 428 (1739)
.-.+++++++.++.+.-+++|+|...=++
T Consensus 401 Nak~IV~elLqYL~tAd~sireeivlKvA 429 (938)
T KOG1077|consen 401 NAKQIVAELLQYLETADYSIREEIVLKVA 429 (938)
T ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 67789999999999999999999876555
No 227
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=24.79 E-value=2.9e+02 Score=29.00 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=45.4
Q ss_pred hHhHHHHHHHhhhhcCC---hhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHH
Q 000275 715 PGFIFERLYKIMKDHKN---PKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLL 783 (1739)
Q Consensus 715 ~~~V~~~l~~~~~~~Kn---PKv~~e~l~wl~~~i~eFG~~~l~~K~li~~~k~~~l~~sN~~VR~aAi~Ll 783 (1739)
...|++.+...+..+.+ +.+...+|..+.+.+.-.....+.-.+++..+-.. | +++..|.+|+.+|
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~-l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQL-L--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHH-T--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHH-c--CCHHHHHHHHHhC
Confidence 34555555555544443 89999999999999985555544445688888777 7 5666699998875
No 228
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=24.67 E-value=3.6e+02 Score=32.38 Aligned_cols=85 Identities=12% Similarity=0.241 Sum_probs=59.7
Q ss_pred hHHHHhhCCChHHHHHHHHHHHHHHhhccCccchHHHHHhhh--ccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHH
Q 000275 1259 PCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL--RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIV 1336 (1739)
Q Consensus 1259 P~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~gl--ksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~i 1336 (1739)
-.|++-+++..--+|-.|--+|-|+..-. -.|+|.++| ..-|+=+|-||.+-||.+ ...++++.+
T Consensus 190 ~al~~~l~~~SalfrhEvAfVfGQl~s~~----ai~~L~k~L~d~~E~pMVRhEaAeALGaI---------a~e~~~~vL 256 (289)
T KOG0567|consen 190 NALIDGLADDSALFRHEVAFVFGQLQSPA----AIPSLIKVLLDETEHPMVRHEAAEALGAI---------ADEDCVEVL 256 (289)
T ss_pred HHHHHhcccchHHHHHHHHHHHhhccchh----hhHHHHHHHHhhhcchHHHHHHHHHHHhh---------cCHHHHHHH
Confidence 34555566655556655555554443221 135555555 445688999999999986 667899999
Q ss_pred HHHhccCChhHHHHHHHHHH
Q 000275 1337 ASLTAERDGEIRKAALNTLA 1356 (1739)
Q Consensus 1337 a~~i~drD~~VR~AALn~l~ 1356 (1739)
-++.+|-++-||.++.-+|-
T Consensus 257 ~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 257 KEYLGDEERVVRESCEVALD 276 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHH
Confidence 99999999999998877765
No 229
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=24.38 E-value=2.4e+02 Score=27.33 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=58.6
Q ss_pred HHHHHHHHHHh-cChhhHhhhhhhh--HHHHHHhccCch-hHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchH
Q 000275 915 TLITLGAVASA-MGPAVEKSSKGVL--SDILKCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGR 990 (1739)
Q Consensus 915 al~ii~~lA~a-mG~~~~k~~k~l~--~~il~~l~D~K~-~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r 990 (1739)
+...+..++.. +|+.+++.++.+. ..-+..+....+ .+++.+.+.|..|...-|-+.-+..+..+|..- +|
T Consensus 4 ~~~~~~~l~~~~~g~~W~~la~~Lg~~~~~i~~i~~~~~~~~~~~~~~lL~~W~~~~g~~at~~~L~~aL~~~-----~~ 78 (88)
T smart00005 4 TREKLAKLLDHPLGLDWRELARKLGLSEADIDQIRTEAPRDLAEQSVQLLRLWEQREGKNATLGTLLEALRKM-----GR 78 (88)
T ss_pred HHHHHHHHHcCccchHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHc-----Ch
Confidence 34566677887 8999998877655 455666666554 799999999999999998777788888988843 46
Q ss_pred HHHHHHH
Q 000275 991 KDLFDWL 997 (1739)
Q Consensus 991 ~e~l~wl 997 (1739)
.++..-+
T Consensus 79 ~d~a~~i 85 (88)
T smart00005 79 DDAVELL 85 (88)
T ss_pred HHHHHHH
Confidence 6665543
No 230
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=24.06 E-value=8e+02 Score=30.59 Aligned_cols=127 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcchh-------hHhHHHHHHHHHHHHHHhcCh
Q 000275 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-------NKNLVMATLITLGAVASAMGP 928 (1739)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~Ds-------Nk~lv~~al~ii~~lA~amG~ 928 (1739)
..+.+.+-+.+=..|.+||+.+ +--|++ ..|++-+-.-+.+. |--+....++++..|-.==.=
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL---------~tD~gl-~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSL---------RTDPGL-QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh---------ccCCCc-hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Q ss_pred hhHhhhhhhhHHHHHHh----------ccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHHHHHH
Q 000275 929 AVEKSSKGVLSDILKCL----------GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (1739)
Q Consensus 929 ~~~k~~k~l~~~il~~l----------~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wl~ 998 (1739)
..++|...|+|+++.|+ .|.--.+|+-|-..|..++...| +.++.++..+..-+.
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~---------------~~y~~l~~ri~~tl~ 315 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFS---------------TSYNTLQPRITRTLL 315 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcC---------------CCCCcHHHHHHHHHH
Q ss_pred HHhccCCCC
Q 000275 999 KQLTGLSGF 1007 (1739)
Q Consensus 999 ~~l~~~~~~ 1007 (1739)
+.|.+...+
T Consensus 316 k~l~d~~~~ 324 (343)
T cd08050 316 KALLDPKKP 324 (343)
T ss_pred HHHcCCCCC
No 231
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=23.63 E-value=7.3e+02 Score=27.60 Aligned_cols=75 Identities=20% Similarity=0.104 Sum_probs=58.5
Q ss_pred HHHHhhhccCCh-hhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhcc
Q 000275 1294 PYILEGLRSKNN-RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372 (1739)
Q Consensus 1294 ~~l~~glksKN~-r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k~~g~ 1372 (1739)
+++.+=.+|.|. ..|+.++-.+....+ + ......|+.+..+++|.+.-||.|.=++|.+++...-+.+..|+.+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~ 182 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK--E---TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEK 182 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh--c---ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 555567789994 567777776666554 1 1234568999999999999999999999999999988888888765
Q ss_pred C
Q 000275 1373 L 1373 (1739)
Q Consensus 1373 l 1373 (1739)
.
T Consensus 183 ~ 183 (197)
T cd06561 183 N 183 (197)
T ss_pred H
Confidence 4
No 232
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=23.50 E-value=1.7e+03 Score=28.85 Aligned_cols=66 Identities=11% Similarity=0.218 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcccC-hhHHHHHHHHHHHHHHhhCC--chhhHHHhhhc
Q 000275 145 VVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD-QNVRASSKGLTLELCRWIGK--DPVKTILFEKM 212 (1739)
Q Consensus 145 v~a~i~~l~~~l~~FG~k~v~~K~ilk~l~~lf~~~d-k~VR~ea~~L~velyrwlG~--~~lk~~L~~~L 212 (1739)
...++.-+.+++..|-. -++-.|-.....++++.. ..+|..|..|+.++-+.=+. ...+..+|..+
T Consensus 7 R~~a~~~l~~~i~~~~~--~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I 75 (464)
T PF11864_consen 7 RIKAAEELCESIQKYPL--SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDI 75 (464)
T ss_pred HHHHHHHHHHHHHhCCc--hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 46788889999999976 456678888889988874 56999999999998876543 23444555443
No 233
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=23.39 E-value=2.6e+02 Score=27.62 Aligned_cols=75 Identities=15% Similarity=0.288 Sum_probs=56.0
Q ss_pred HHHHHHHhcChhhHhhhhhhh--HHHHHHhc-cCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHH
Q 000275 918 TLGAVASAMGPAVEKSSKGVL--SDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLF 994 (1739)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l~--~~il~~l~-D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l 994 (1739)
.+..||.-+|+.+.+.++-+. ..-+..+. |+-..+++.+.+.|..|....|-+.-+..+..+|.. + .|.+++
T Consensus 6 ~l~~ia~~LG~dWk~LAr~Lg~se~dI~~i~~~~~~~~~eq~~~mL~~W~~r~g~~At~~~L~~aL~~--i---~r~Div 80 (84)
T cd08804 6 RLAVIADHLGFSWTELARELDFTEEQIHQIRIENPNSLQDQSHALLKYWLERDGKHATDTNLMKCLTK--I---NRMDIV 80 (84)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCcccHHHHHHHHHHHHHHccCCCchHHHHHHHHHH--c---ChHHHH
Confidence 456789999999998877544 33344444 445679999999999999999977777788888873 2 477777
Q ss_pred HHH
Q 000275 995 DWL 997 (1739)
Q Consensus 995 ~wl 997 (1739)
+-+
T Consensus 81 ~~~ 83 (84)
T cd08804 81 HLM 83 (84)
T ss_pred HHh
Confidence 643
No 234
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=23.38 E-value=1.1e+02 Score=24.78 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=24.3
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000275 446 YVPICMECLNDGTPEVRDAAFSVLAAI 472 (1739)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aa~~~l~~l 472 (1739)
.+|.+++++...+++++..++.+|..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 688899999999999999999998765
No 235
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=23.12 E-value=5.5e+02 Score=26.26 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=43.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHH
Q 000275 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (1739)
Q Consensus 369 p~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~ 448 (1739)
..+|++|..-| +-....+.|..|+..+.-.=..+++-+...++...|.-|...+-.+...+.+........+...+.+
T Consensus 5 ~~~l~~L~~~~--~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~ 82 (114)
T cd03562 5 NALLEKLTFNK--NSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVP 82 (114)
T ss_pred HHHHHHHHcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 34556665543 2233344455554431111234566666677666676666555555545554432211111122244
Q ss_pred HHHhhhCCCCHHHHHH
Q 000275 449 ICMECLNDGTPEVRDA 464 (1739)
Q Consensus 449 ~l~k~l~Ds~~~VR~a 464 (1739)
.+.......++.+|+.
T Consensus 83 ~f~~~~~~~~~~~r~k 98 (114)
T cd03562 83 LFLDAYEKVDEKTRKK 98 (114)
T ss_pred HHHHHHHhCCHHHHHH
Confidence 4444444445555543
No 236
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=22.93 E-value=1.5e+02 Score=34.80 Aligned_cols=104 Identities=24% Similarity=0.327 Sum_probs=65.0
Q ss_pred hhhhHhHHHHHHHHHHhccCc---chHHHHHHhh-----hhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCC-ChHHHH
Q 000275 1203 KDIIEVLDILLRWFVLQFCKS---NTTCLLKVLE-----FLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH-NIEKVR 1273 (1739)
Q Consensus 1203 ~~~i~~lDlllkw~tlr~~dt---N~~vl~k~Le-----~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd-~k~~vR 1273 (1739)
.+.|+| +==-|+|+|=|-. |...|+..=+ ||..++..|..++|.. |+ .| || |.-
T Consensus 104 rafICn--l~eHWF~iRKfg~qWfnlnSllagPellSdtyls~FL~qlq~egySI-------FV----Vk-G~lP~~--- 166 (315)
T KOG2935|consen 104 RAFICN--LKEHWFTIRKFGKQWFNLNSLLAGPELLSDTYLSAFLAQLQQEGYSI-------FV----VK-GDLPDC--- 166 (315)
T ss_pred hhhhhc--chhhhhhHhhhcchhccchhhhcchHHHHHHHHHHHHHHHHhCCeeE-------EE----Ee-cCCCCc---
Confidence 344544 3457999975554 5555554433 6677788888888853 11 11 33 110
Q ss_pred HHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCccc
Q 000275 1274 EKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEIS 1327 (1739)
Q Consensus 1274 ~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~ 1327 (1739)
.. .-+=+++.|-+.+|+|+-= -.+.|--|.|.--++-++..=+..|.+|-
T Consensus 167 -ea-dql~~m~~v~e~pk~~gkk--l~~qk~erV~k~~~~~v~~~n~~Sg~~~d 216 (315)
T KOG2935|consen 167 -EA-DQLLQMISVSEAPKLFGKK--LSPQKEERVRKTTLEGVSERNDGSGDNVD 216 (315)
T ss_pred -cH-hhhhcccccccCcccchhh--cchhHHHHHHHHHHHhHHhhcCCCCCCcc
Confidence 00 1223467777889999852 23567788899999999998778888763
No 237
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.80 E-value=1.3e+03 Score=32.09 Aligned_cols=180 Identities=19% Similarity=0.152 Sum_probs=107.1
Q ss_pred hhhccChHHHHHHHHHHHHhhhcCCCCCC-ChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHH
Q 000275 293 GVKATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371 (1739)
Q Consensus 293 ~l~s~KWkeRkEaLe~l~~l~~~pKi~~~-dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~l 371 (1739)
.+.++--=.|..||..+-.++.+-+-.+- .-.-+.......+.|-+--|-..|++-+..|+.- |=..++|.+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL 807 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDL 807 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHH
Confidence 33445555677777777776653322221 1224566677777788888888888866677665 777889999
Q ss_pred HH-HhccCCHH-------HHHHHHHHHHHHHHhcCCChhh-hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHh
Q 000275 372 LE-KLKEKKPT-------VAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (1739)
Q Consensus 372 Le-klKEKK~~-------V~eA~~~aLda~~~~~~~~l~~-~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~~~~~~~~ 442 (1739)
.| ..-+||.. |-||+.+.+.+.-.- +...-+ ++.-+..+.....-..|+.++.-+..+.....-..-.-+
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel-~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGEL-VFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccH-HHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 98 55555555 566666666554332 212122 223333333322223488888777777654321111112
Q ss_pred hhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH
Q 000275 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1739)
Q Consensus 443 ~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~k~~Ge~~ 480 (1739)
+..+.-++.-...|..+-||.||.-.+..+..-.|++.
T Consensus 887 ~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 887 HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 22222233334469999999999999999999999763
No 238
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=22.46 E-value=8.9e+02 Score=29.80 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhcccccchhhhhHHHHHHHhcc-------CCHHHHHHHHHHHHHHHHhcCCC---------hhhhHH
Q 000275 343 VEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE-------KKPTVAESLTQTLQAMHKAGCLN---------LVDVVE 406 (1739)
Q Consensus 343 ~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKE-------KK~~V~eA~~~aLda~~~~~~~~---------l~~~~e 406 (1739)
...++|++.+.+.++..+.++...++..+++..-+ .=|..|.+--+-|.++..+ |.+ +..+++
T Consensus 90 ~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~-~f~~l~~lp~~~f~~~id 168 (319)
T PF08767_consen 90 PEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEH-CFPALLQLPPEQFKLVID 168 (319)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHH-HTHHHHHS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHH-hHHHHHcCCHHHHHHHHH
Confidence 45677788888888888777777777666665432 4577777777777777665 422 345678
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhhCC
Q 000275 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1739)
Q Consensus 407 ~i~~al~~KnP~vk~et~~~l~r~l~~~~ 435 (1739)
-+.-+++|.++.|-...+.-|...+.+..
T Consensus 169 si~wg~kh~~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 169 SIVWGFKHTNREISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999988888887543
No 239
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.28 E-value=1.8e+03 Score=30.24 Aligned_cols=203 Identities=12% Similarity=0.197 Sum_probs=114.4
Q ss_pred hhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcC---CCCCCcchhhhHHhHhhhhhhcc
Q 000275 175 ELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVS---GTARPTRKIRAEQDKELGQELIS 251 (1739)
Q Consensus 175 ~lf~~~dk~VR~ea~~L~velyrwlG~~~lk~~L~~~Lkp~q~keLe~efek~~---~~~~p~R~~Rs~q~~~~~~~~~~ 251 (1739)
..+..+|-+||..|..|+++.|--.||++-+... | ..+|++|+-+. ..+-|. +||..-+
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~m-D-------~i~~kQf~~l~~LL~d~~p~--VRS~a~~-------- 242 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEM-D-------SIIQKQFEELYSLLEDPYPM--VRSTAIL-------- 242 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHH-H-------HHHHHHHHHHHHHhcCCCch--HHHHHHH--------
Confidence 3468899999999999999999999998533222 2 44555554431 233342 5554321
Q ss_pred cCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChhHHHHHHH
Q 000275 252 EDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLK 331 (1739)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lk 331 (1739)
=+.|.. +.||+.|-+. - ..+|+.-+-
T Consensus 243 -----------------------------gv~k~~-s~fWe~iP~~-------i-----------------~~~ll~kI~ 268 (1005)
T KOG1949|consen 243 -----------------------------GVCKIT-SKFWEMIPPT-------I-----------------LIDLLKKIT 268 (1005)
T ss_pred -----------------------------HHHHHH-HHHHHHcCHH-------H-----------------HHHHHHHHH
Confidence 011223 4676655332 1 112222222
Q ss_pred HHhc-cccHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhh--HHHH
Q 000275 332 KLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV--VEDV 408 (1739)
Q Consensus 332 k~l~-DsNv~vv~~A~~~l~~lA~gLr~~F~~y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~--~e~i 408 (1739)
.-+. |+-+-|-.-..++|..|+.- +...+-...++|.+=--+-|+-..||-|..+-|--+-..-..++.++ +|++
T Consensus 269 d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~ 346 (1005)
T KOG1949|consen 269 DELAFDTSSDVRCSVFKGLPMILDN--PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHI 346 (1005)
T ss_pred HHhhhccchheehhHhcCcHHHHcC--ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHH
Confidence 2223 55555555566666666521 11122233344444444568888899888887776644323445554 4778
Q ss_pred HHHhhcCC-chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCC
Q 000275 409 KTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1739)
Q Consensus 409 ~~al~~Kn-P~vk~et~~~l~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1739)
+.-|..-+ |--|......+.-||.-..+. ..+++-|...++-+
T Consensus 347 l~~L~~d~~~v~rr~~~li~~s~lP~~k~e------e~~c~Rc~tlv~~n 390 (1005)
T KOG1949|consen 347 LVRLETDSRPVSRRLVSLIFNSFLPVNKPE------EVWCERCVTLVQMN 390 (1005)
T ss_pred HHHHhccccHHHHHHHHHHHHhhcCCCCcH------HHHHHHHHHHHccC
Confidence 88887655 777777777777777644332 23567676666544
No 240
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.68 E-value=8.2e+02 Score=24.70 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=41.0
Q ss_pred hhhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHH---HHHHh---hcCCchhHHHHHHHHHHHHhh
Q 000275 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED---VKTSV---KNKVPLVRSLTLNWVTFCIET 433 (1739)
Q Consensus 363 y~~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~---i~~al---~~KnP~vk~et~~~l~r~l~~ 433 (1739)
|.+.++-.+++..-|+|...++.....+..++..+.++-+++... +...+ .-..|.....+..|+++++..
T Consensus 33 ~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~Dl~~D~P~~~~~la~~~~~~i~~ 109 (113)
T PF02847_consen 33 QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLEDLELDIPKAPEYLAKFLARLIAD 109 (113)
T ss_dssp GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhhccccchHHHHHHHHHHHHHHHc
Confidence 344455555666666666666666666666665544443333322 22211 133788888888888888753
No 241
>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]
Probab=21.68 E-value=6.7e+02 Score=27.60 Aligned_cols=105 Identities=13% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHcccCCCCCCccchHHHHhhhcchh-----hHhHHHHHHHHHHHHHHhcChhhHhhhhhhhHHHHHHhccCch
Q 000275 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDS-----NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK 950 (1739)
Q Consensus 876 ~v~~il~~ankrI~p~~~geL~~aLk~Rl~Ds-----Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~ 950 (1739)
+|..+++. |+...||+.-|.++ |.++...+++++-.+-.+
T Consensus 41 ev~sll~q----------g~~~~AL~~aL~~~P~~t~~q~vK~~a~~~v~~vL~~------------------------- 85 (152)
T KOG3380|consen 41 EVRSLLTQ----------GKSLEALQTALLNPPYGTKDQEVKDRALNVVLKVLTS------------------------- 85 (152)
T ss_pred HHHHHHHc----------ccHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHH-------------------------
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCC
Q 000275 951 HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKS 1025 (1739)
Q Consensus 951 ~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~~~~~~~~~~~p~~~~L~Dr~ 1025 (1739)
+|++=+.+.-.-+..-+.|-++-+|-..|..|..++. =..+|.|.++-+....-+ +|+-+|.||.
T Consensus 86 -ik~adI~~~v~~Ls~e~~DiLmKYiYkGm~~p~d~~s-~~~LL~WHEk~~~~~GvG--------~IvRvLs~r~ 150 (152)
T KOG3380|consen 86 -IKQADIEAAVKKLSTEEIDILMKYIYKGMEIPSDNSS-CVSLLQWHEKLVAKSGVG--------CIVRVLSDRQ 150 (152)
T ss_pred -HHHHhHHHHHHHhhHHHHHHHHHHHHHHhcCccccch-HHHHHHHHHHHHHhcCCc--------eEEEeecCCc
No 242
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=21.63 E-value=5.8e+02 Score=34.37 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=60.4
Q ss_pred hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcchhhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhh
Q 000275 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012 (1739)
Q Consensus 933 ~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~~~~~~~~ 1012 (1739)
....++.-+.++|.|.-+-+|+-|++.+..+++-- ...|.-|+|+.....
T Consensus 343 ~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~----------------sk~~~~r~ev~~lv~-------------- 392 (1128)
T COG5098 343 KLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN----------------SKTVGRRHEVIRLVG-------------- 392 (1128)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc----------------ccccchHHHHHHHHH--------------
Confidence 34445566778999999999999999887775431 123445777665544
Q ss_pred hhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Q 000275 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIE 1049 (1739)
Q Consensus 1013 ~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~ 1049 (1739)
-||+||+.-||++|-.++..++..-.+..+.
T Consensus 393 ------r~lqDrss~VRrnaikl~SkLL~~HPF~~~h 423 (1128)
T COG5098 393 ------RRLQDRSSVVRRNAIKLCSKLLMRHPFASEH 423 (1128)
T ss_pred ------HHhhhhhHHHHHHHHHHHHHHHhcCChhhhc
Confidence 4579999999999999999888877777665
No 243
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.46 E-value=1.6e+03 Score=28.05 Aligned_cols=180 Identities=13% Similarity=0.156 Sum_probs=92.4
Q ss_pred hccChHHHHHHHHHHHHhh-hcCCCCCC-ChhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh---cccccchhhhhHH
Q 000275 295 KATKWSERKDAVAELTKLA-STKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL---RTHFSGSSRFLLP 369 (1739)
Q Consensus 295 ~s~KWkeRkEaLe~l~~l~-~~pKi~~~-dy~eL~~~Lkk~l~DsNv~vv~~A~~~l~~lA~gL---r~~F~~y~~~~lp 369 (1739)
++..-.-=+.+|+.|..+. +.|++.+. ...=++..|..-..|+.+-+ .+++|+..-|.+= |..|-.- .+++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt~--~~~~~v~~Ac~~hE~nrQ~~m~~--~il~ 192 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVTL--LTLQWLQKACIMHEVNRQLFMEL--KILE 192 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHHHH--HHHHHHHHHHHHhHHHHHHHHHh--hHHH
Confidence 3344444566788887766 58888763 45556666665555554443 3445555444331 3344322 2344
Q ss_pred HHH-HHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC-hhHH--------
Q 000275 370 VLL-EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KAAV-------- 439 (1739)
Q Consensus 370 ~lL-eklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~l~r~l~~~~-~~~~-------- 439 (1739)
-|+ --..+.|.-++.++..++-++. .-+|+-=.+-.+-.|.---++...+.-|...++..- +..+
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~-----~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~ 267 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALL-----TDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLK 267 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhc-----CCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHH
Confidence 444 2345777755555556655542 222221111111112212222223333333333210 1111
Q ss_pred -----HHhhhhh-----HHHHHhhhCC-CCHHHHHHHHHHHHHHHHHhChhHHHH
Q 000275 440 -----LKVHKDY-----VPICMECLND-GTPEVRDAAFSVLAAIAKSVGMRPLER 483 (1739)
Q Consensus 440 -----~~~~k~~-----~~~l~k~l~D-s~~~VR~aa~~~l~~l~k~~Ge~~l~~ 483 (1739)
..+++++ +..++.|++| ..-.+|+.+-.|+..+-++.|.+.+..
T Consensus 268 ~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs 322 (461)
T KOG4199|consen 268 ALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKS 322 (461)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHH
Confidence 1122333 3468899999 556899999999999999999765543
No 244
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=21.02 E-value=1.1e+03 Score=29.22 Aligned_cols=182 Identities=15% Similarity=0.124 Sum_probs=110.9
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhh---cCCCCCCChhHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhcccccch-h
Q 000275 290 FWEGVKATKWSERKDAVAELTKLAS---TKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGS-S 364 (1739)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~---~pKi~~~dy~eL~~~Lkk~l-~DsNv~vv~~A~~~l~~lA~gLr~~F~~y-~ 364 (1739)
+...+-|..-..-..|.-++.++++ +|-|.+---.-++.-+-..+ ..-+-++.-.|+=.+..+|.|--..-.-- -
T Consensus 76 lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd 155 (526)
T COG5064 76 LTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVD 155 (526)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEe
Confidence 4445555555555555555666664 67776521122333344444 35666778899999999999975432111 1
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh------hhHHHHHHHhhcCCchhHH-HHHHHHHHHHhh--CC
Q 000275 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKVPLVRS-LTLNWVTFCIET--SS 435 (1739)
Q Consensus 365 ~~~lp~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~------~~~e~i~~al~~KnP~vk~-et~~~l~r~l~~--~~ 435 (1739)
..-+|-++.-|-+....|+|.+.=||-.++.- +...- -.+|.++..+.+.-+.++. -...|.-.-+.. .|
T Consensus 156 ~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD-S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP 234 (526)
T COG5064 156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGD-SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNP 234 (526)
T ss_pred CCchHHHHHHHcCchHHHHHHHHHHhccccCC-chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCC
Confidence 23467788888889999999888888766542 11111 2346666666655453332 234454444432 23
Q ss_pred hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000275 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1739)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aa~~~l~~l~ 473 (1739)
++.- .-+...+|++.|++.-.+++|---|+=++..+.
T Consensus 235 ~P~w-~~isqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 235 PPDW-SNISQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred CCch-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 3322 334677999999999999999888887776553
No 245
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=20.97 E-value=1.1e+02 Score=31.52 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhhhhhhhhcCCCChHHHHHHHHHHHHhhChHHHhhcCCCCCCChhHHHHHHHHHHHHhh
Q 000275 1639 SDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG 1707 (1739)
Q Consensus 1639 ~eLvmKCLwK~~k~l~~~~~~l~~d~iL~~ih~Fl~~~p~~~wr~r~~~~D~PlRtvKTiLh~l~k~~G 1707 (1739)
-.-||+|||+.-. +. ..+||+-|..- .+-..-||+|+|..|++ +|
T Consensus 5 E~~IM~~lW~~~~-~t-----------~~eI~~~l~~~-----------~~~~~sTv~t~L~rL~~-Kg 49 (115)
T PF03965_consen 5 ELEIMEILWESGE-AT-----------VREIHEALPEE-----------RSWAYSTVQTLLNRLVE-KG 49 (115)
T ss_dssp HHHHHHHHHHHSS-EE-----------HHHHHHHHCTT-----------SS--HHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHhCCC-CC-----------HHHHHHHHHhc-----------cccchhHHHHHHHHHHh-CC
Confidence 3569999998754 21 24566655421 23456899999999998 44
No 246
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.95 E-value=2e+03 Score=28.85 Aligned_cols=196 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH------HhcCCCccchHHHHHHHHHHHHHHHHhcCCC
Q 000275 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV------CMLPGWSEKNVQVQQQVIEVINYLAATATKF 677 (1739)
Q Consensus 604 ~~i~~~L~~~~WK~Rl~a~e~l~~~v~~~~~~~~~~~~Lvr~l------~~~PgwkesNfqV~~~~leil~~la~~~~~f 677 (1739)
.+|.+.+.+++=+.|-+|++.|. .|...+.++=+| ...-...-.|++.+--.+.++..|..+-.-|
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~--------TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLE--------TDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhc--------cCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccc
Q ss_pred Cccchhh----hccchhhccccch--------hhhHHHHHHHHHHHhhchHh------HHHHHHHhhhhc-CChhhHHHH
Q 000275 678 PKKCVVL----CLLGISERVADIK--------TRAHAMKCLTTFSEAVGPGF------IFERLYKIMKDH-KNPKVLSEG 738 (1739)
Q Consensus 678 s~~~~~~----~l~~lveKlgD~K--------~r~~a~e~L~~~aE~~~~~~------V~~~l~~~~~~~-KnPKv~~e~ 738 (1739)
=..+.+. ++..+|.|--+.. +|+-|..++..+|-.++-.| |+.-+.+.+... |.+-.+=.+
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGa 361 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGA 361 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhH
Q ss_pred HHHHHHHHHHhccCcc------chHhHHHHHhhhcCCCccHHH---HHHHHHHHHHHHhhhCc---------------hh
Q 000275 739 ILWMVSAVEDFGVSHL------KLKDLIDFCKDTGLQSSAAAT---RNATIKLLGALHKFVGP---------------DI 794 (1739)
Q Consensus 739 l~wl~~~i~eFG~~~l------~~K~li~~~k~~~l~~sN~~V---R~aAi~Ll~~ly~~~G~---------------~l 794 (1739)
+ ..|.+||-..+ +++....-++.. +...+-+= +..|-.+-+.|++..++ ..
T Consensus 362 i----~gL~~lg~~~I~~~ilp~L~~~~~~l~~~-l~~~~~~n~~~i~ea~~v~~~llk~~~~ii~~~l~~~~~~~~~~~ 436 (576)
T KOG2549|consen 362 I----AGLSELGHEVIRTVILPNLKEYNERLQSV-LDVESLSNQLDIYEANKVYGALLKAENPIIRDKLNSAPDNPVPAL 436 (576)
T ss_pred H----HHHHHhhhhhhhheeccchHHHHHHhhhh-cccchhhhhhhhhhhhhHHHHHHHHhhHHHHhhhccccCCCCCcc
Q ss_pred HhhhhcchHHHHHHHHHH
Q 000275 795 KGFLADVKPALLSALDAE 812 (1739)
Q Consensus 795 ~~~l~dlkpall~~ie~E 812 (1739)
+.+++.+-+.++++....
T Consensus 437 r~~~~~~g~~l~~e~~~~ 454 (576)
T KOG2549|consen 437 RRLRGSLGESLLSEVVKK 454 (576)
T ss_pred hhhcccccHHHHHHHHhh
No 247
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=20.40 E-value=1.9e+02 Score=31.89 Aligned_cols=84 Identities=12% Similarity=0.192 Sum_probs=51.1
Q ss_pred hhhhhH-HHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHH
Q 000275 969 LDKMVP-YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQET 1047 (1739)
Q Consensus 969 l~~~~~-~i~~~L~~~~~~p~~r~e~l~wl~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~ 1047 (1739)
+..++| ++.+++. ++|++-|.++-+|...+ ... ..-.|--..+++.+-.+-..+... ++.
T Consensus 6 ~k~~iP~ev~~~~~--~Lt~eeK~~lkev~~~~-~~~--------------~~~de~i~~LK~ksP~L~~k~~~l--~~~ 66 (154)
T PF05823_consen 6 YKELIPSEVVEFYK--NLTPEEKAELKEVAKNY-AKF--------------KNEDEMIAALKEKSPSLYEKAEKL--RDK 66 (154)
T ss_dssp HHTT--HHHHHHHH--H--TTTHHHHHHHHTT----------------------TTHHHHHHHH-HHHHHHHHHH--HHH
T ss_pred HHHhCcHHHHHHHH--cCCHHHHHHHHHHHHHc-ccc--------------CCHHHHHHHHHHhCHHHHHHHHHH--HHH
Confidence 356777 7888888 56888999999887654 111 122333445555555554444444 667
Q ss_pred HHHHhhccCchhHHHHHHHHHhcc
Q 000275 1048 IEKNLKDIQGPALALILERIKLNG 1071 (1739)
Q Consensus 1048 ~~~~~~~Lk~~~~~~i~~~l~ka~ 1071 (1739)
+...+++|+|.++.-+.+.+++++
T Consensus 67 ~k~ki~~L~peak~Fv~~li~~~~ 90 (154)
T PF05823_consen 67 LKKKIDKLSPEAKAFVKELIAKAR 90 (154)
T ss_dssp HHHTTTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888899999999999999999875
No 248
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=20.37 E-value=4.9e+02 Score=35.48 Aligned_cols=99 Identities=10% Similarity=0.069 Sum_probs=65.5
Q ss_pred hhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCc--cchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcc--cCccc
Q 000275 1256 VFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA--TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEI--SGQLK 1331 (1739)
Q Consensus 1256 ~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~--skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v--~~~~K 1331 (1739)
.+|-+||+=.... .=..++..++.|=.+ .-+|..|=+-+. ++.+|..+|..+|++|.+...-+ .....
T Consensus 39 ~l~~~l~~y~~~t------~s~~~~~il~~~~~P~~K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~ 110 (668)
T PF04388_consen 39 WLVNGLVDYYLST------NSQRALEILVGVQEPHDKHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTP 110 (668)
T ss_pred HHHHHHHHHHhhc------CcHHHHHHHHhcCCccHHHHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcCh
Confidence 5555555544331 112344445555555 444444444453 56789999999999999988776 23334
Q ss_pred hHHHHHHHhc-cCChhHHHHHHHHHHHHHHHh
Q 000275 1332 SLQIVASLTA-ERDGEIRKAALNTLATGYKIL 1362 (1739)
Q Consensus 1332 al~~ia~~i~-drD~~VR~AALn~l~~~y~~~ 1362 (1739)
-++.+-+++- |.|..|=.+||.||+.+-=++
T Consensus 111 Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 111 LFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 5677777776 999999999999999875443
Done!