Query 000275
Match_columns 1739
No_of_seqs 259 out of 410
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 19:02:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000275.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_51-55//hhsearch_pdb/000275hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2of3_A ZYG-9; multifunctional 1.0 1 1 546.9 26.9 257 1129-1389 2-265 (266)
2 2qk1_A Protein STU2; STU2P, XM 1.0 1 1 358.7 28.1 231 270-502 2-248 (249)
3 4ffb_C Protein STU2; tubulin f 1.0 1 1 350.7 20.8 245 1-247 1-266 (278)
4 2qk2_A LP04448P; mini spindles 1.0 1 1 292.5 25.2 231 271-504 2-235 (242)
5 4ffb_C Protein STU2; tubulin f 1.0 1 1 277.5 11.9 226 601-832 11-260 (278)
6 2qk1_A Protein STU2; STU2P, XM 1.0 1 1 262.1 20.2 227 841-1070 4-249 (249)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 247.4 66.6 994 15-1372 10-1047(1230)
8 2qk2_A LP04448P; mini spindles 1.0 1 1 240.9 22.0 228 842-1072 4-236 (242)
9 2of3_A ZYG-9; multifunctional 1.0 1 1 238.0 23.5 218 592-816 37-264 (266)
10 1u6g_C TIP120 protein, CAND1; 1.0 1 1 231.0 60.1 908 16-1043 53-1096(1230)
No 1
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=546.86 Aligned_cols=257 Identities=28% Similarity=0.570 Sum_probs=247.9
Q ss_pred HHHCCCCCCCHHHHHH----HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 1101368998688886----341232234899357999999998862599999622418888999999999736988135
Q 000275 1129 QALLNVKDSNKEDRER----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKD 1204 (1739)
Q Consensus 1129 ~~~~~~~~~~K~~R~~----~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~ 1204 (1739)
+|++ ..+++|++|++ ++++||+|++||+|+|++|++||.+|++++++.+|||+|||+|++|+++|++.++++.++
T Consensus 2 ~~~l-~~~~~K~~R~~~e~~~k~~~w~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~ 80 (266)
T 2of3_A 2 ELLL-SDNEDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRS 80 (266)
T ss_dssp CCSB-CCSSHHHHHHHHHHTTCSCCSCCSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCCE-ECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHH
T ss_conf 9831-167517888887513466668889999899999999999845599999862877999999999999883017699
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 66767799999988406752699999751169999998740875437678656569987417883789999999999871
Q 000275 1205 IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIV 1284 (1739)
Q Consensus 1205 ~i~~lDlilkw~tlr~~dtN~~vl~k~Le~l~~lf~~l~~~~y~lse~Ea~~flP~Li~K~Gd~k~~vR~~vr~i~~~~~ 1284 (1739)
+++++|++|||+++||||+|++|++++||+|.++|++|.+.+|+|+||||++|+|+||+|+||+||.||+.+|.|+++++
T Consensus 81 ~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~ 160 (266)
T 2of3_A 81 LLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS 160 (266)
T ss_dssp HHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999971887999999999999999999864556509899978999999828974889999999999999
Q ss_pred HCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0267300279998542037803586899999999985157645763208---9999772067746899999999999987
Q 000275 1285 NFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL---QIVASLTAERDGEIRKAALNTLATGYKI 1361 (1739)
Q Consensus 1285 ~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal---~~ia~~i~drD~~VR~AALn~l~~~y~~ 1361 (1739)
.+||++++|+|+++|++|||||||.|||+|++++|++||+. |.|++ |.||++++|||++||+|||||++++|++
T Consensus 161 ~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 161 DVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 87899999999999971698999999999999999862997---200024347999987399878999999999999998
Q ss_pred HCHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 3436899821689788752999997767
Q 000275 1362 LGEDIWRYVGKLTDAQKSMLDDRFKWKV 1389 (1739)
Q Consensus 1362 ~Gd~i~k~ig~ls~k~~s~Leer~kr~~ 1389 (1739)
+||+||+++|+|++++++||+|||||++
T Consensus 238 ~Gd~v~k~lg~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 238 EGDQMWKAAGRMADKDKSLVEERIKRTG 265 (266)
T ss_dssp HTTHHHHHHCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 1199999884489999999999986445
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=358.72 Aligned_cols=231 Identities=25% Similarity=0.440 Sum_probs=219.4
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-HH-HCCCCC--CCCHHHHHHHHHHHH-CCCCHHHHHH
Q ss_conf 995556895655687870135653201694999999999997-54-159999--999269999999871-3211899999
Q 000275 270 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK-LA-STKRIA--PGDFTEVCRTLKKLI-TDVNIAVAVE 344 (1739)
Q Consensus 270 iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~L~~-l~-~~pki~--~~dy~eL~~~Lkk~l-~DsNv~vv~~ 344 (1739)
.|+|||+|||||++|||+ +|++.+.|+||+||++||++|.. ++ +++++. .++|+++++.|++.+ .|+|+.|+..
T Consensus 2 ~~~~d~~~~~~i~~kl~~-~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~ 80 (249)
T 2qk1_A 2 SHMASMLPEETILDKLPK-DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80 (249)
T ss_dssp CCSCCCCCCBCCGGGSCT-THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CCHHHHCCHHHHHHHCCH-HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 865761671466551772-0787851687999999999999999745986566742399999999998335898999999
Q ss_pred HHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHCCC
Q ss_conf 9999999998710-1011-0034159999998214787899999999999998337------984656999999862489
Q 000275 345 AIQAIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC------LNLVDVVEDVKTSVKNKV 416 (1739)
Q Consensus 345 A~~~i~~lA~gLr-~~F~-~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~------~~l~~~~e~i~~al~~Kn 416 (1739)
|++|++.||+||| +.|. +|...++|++|++|||||+.|++++..||++++.+ + ..+++++|++..+|+|||
T Consensus 81 A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~ 159 (249)
T 2qk1_A 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKT 159 (249)
T ss_dssp HHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 999999999762654541878999999999987379779999999999999997-3012357769999999999876998
Q ss_pred CHHHHHHHHHHHHHHHHCCH--HHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHH
Q ss_conf 43389899999999940883--6887855-54689998650789978899999999999998290678897620799999
Q 000275 417 PLVRSLTLNWVTFCIETSSK--AAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (1739)
Q Consensus 417 P~vk~et~~~L~r~l~~~~~--~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l~k~vGe~~l~~~l~~Ld~~kk 493 (1739)
|++|.+++.||.+++...+. ..+.+.+ +.++|.+.++++|++++||++|+++++++++++|++.+.+++.+||+.|+
T Consensus 160 ~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~ 239 (249)
T 2qk1_A 160 PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKR 239 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 39999999999999987678506688987999999999986699899999999999999998197878999998708899
Q ss_pred HHHHHHHHC
Q ss_conf 999999824
Q 000275 494 NKLSEMIAG 502 (1739)
Q Consensus 494 ~KI~e~~~~ 502 (1739)
+||++++++
T Consensus 240 ~ki~~~~~~ 248 (249)
T 2qk1_A 240 KKIEETVKT 248 (249)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
T ss_conf 999998745
No 3
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=350.72 Aligned_cols=245 Identities=24% Similarity=0.348 Sum_probs=206.0
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--CC---HHHHHHHHCHHHHCCCCCHHHHHHHHHH
Q ss_conf 973676375312898000148677467899999999984102899--86---1345111101221278899999999999
Q 000275 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDP--KD---NRIRELGPLFKKTVADSNAPVQDKALDA 75 (1739)
Q Consensus 1 m~~~~~~~~~~~~lpl~erl~hK~WKaRl~ayeel~~~f~~~~d~--~d---~~~~~~~~l~kk~v~DsN~~aqek~lea 75 (1739)
|++||+ .||++|||+|||.|||||.|++|||++.+.|+..... .+ ..|..+..+++|++.|+|++||++++++
T Consensus 1 m~~~e~--~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~ 78 (278)
T 4ffb_C 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVA 78 (278)
T ss_dssp ------------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCCCH--HHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 997430--225409977752068189999999999999863865555306799999989999998545449999999999
Q ss_pred HHHHHHHCCHHHH------HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHCCCCHHHHH
Q ss_conf 9999997272223------3567787999975204-8822378899999999840102-549999999851057122878
Q 000275 76 LIAYLKAADADAG------RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV-DVFLDVMEKAIKNKVAKAVVP 147 (1739)
Q Consensus 76 l~~~l~~a~~~~~------~~~~~v~~~lveK~l~-~r~~tk~~a~e~~l~~vE~e~~-~~v~e~ll~~~~~K~PKvv~a 147 (1739)
+..|+..++...+ ..+..++++|++|||+ +|+++++.+.++++.++|.... +.+++.+.++++|||||++++
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~ 158 (278)
T 4ffb_C 79 LNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAA 158 (278)
T ss_dssp HHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999985122101202588899998999999705763899999999999999861769999999999884268778999
Q ss_pred HHHHHHHHHHHHCCCCCCHHH----HHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHCHHHHHHHHH
Q ss_conf 999999999961988669267----8852235323668569998999999998751891--1147885134299999999
Q 000275 148 AIDVMFQALSEFGAKIIPPKR----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD--PVKTILFEKMRDTMKKELE 221 (1739)
Q Consensus 148 ai~~l~~~l~~FG~k~v~~K~----ilk~l~~lf~~~dk~VR~ea~~L~velyrwiG~~--~lk~~L~~~Lkp~q~keLe 221 (1739)
|+.||..++.+||++++++++ +++.++++|+|+|++||++|+++++++|+|+|+. ++...++++|||+|+++|+
T Consensus 159 ~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le 238 (278)
T 4ffb_C 159 AANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238 (278)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999998498768814479999999999981786999999999999999996843445556666118999999999
Q ss_pred HHHHHCCCCCC--CCCHHHHHHHHHHHH
Q ss_conf 99970479988--852214577596421
Q 000275 222 VELVNVSGTAR--PTRKIRAEQDKELGQ 247 (1739)
Q Consensus 222 ~efek~~~~~~--P~R~~Rs~q~~~~~~ 247 (1739)
++|+|+.+.++ |+|+.+.+++.+.+.
T Consensus 239 ~~f~k~~~~~~~~~~~~~~~~~~~~~~~ 266 (278)
T 4ffb_C 239 KLFAKVGDEPSSSKMLFEWEKRELEKKR 266 (278)
T ss_dssp HHHSCCCC-------CCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9998667999999850366575688887
No 4
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=292.48 Aligned_cols=231 Identities=29% Similarity=0.467 Sum_probs=217.3
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHC-CCCHHHHHHHHHH
Q ss_conf 955568956556878701356532016949999999999975415-99999992699999998713-2118999999999
Q 000275 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQA 348 (1739)
Q Consensus 271 Dp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~L~~l~~~-pki~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~ 348 (1739)
|||||++||||+++|| ++|++.+.|++|++|++|++.|..++.. +++..++|++++..|++++. |+|..|+..|++|
T Consensus 2 d~~d~~~~~di~~~l~-~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~ 80 (242)
T 2qk2_A 2 SHMDLLDPVDILSKMP-KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKC 80 (242)
T ss_dssp HHHHTTSCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHHCCCCCCCCCCC-HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 8777388653200179-899966263878999999999999871288888777999999999984568989999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999871010110034159999998214787899999999999998337984656999999862489433898999999
Q 000275 349 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1739)
Q Consensus 349 i~~lA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et~~~L~ 428 (1739)
++.||+++|+.|.+|...++|+++++++|+|+.||+++..||++++.. .+++.+++.+..+++|+||++|.+++.||.
T Consensus 81 l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 81 LALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999999986617989999999999997689889999999999999972--899999999999884898399999999999
Q ss_pred HHHHHCCHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf 999408836-8878555468999865078997889999999999999829067889762079999999999982489
Q 000275 429 FCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 504 (1739)
Q Consensus 429 r~l~~~~~~-~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l~k~vGe~~l~~~l~~Ld~~kk~KI~e~~~~~~ 504 (1739)
+++....+. .....+..++|.++.+++|++++||++|.++++.+++.+|++.+.+++.+||+.++++|+++++++.
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~ 235 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAE 235 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99987188776689999999999988469985899999999999999849999999998527999999999998888
No 5
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=277.54 Aligned_cols=226 Identities=17% Similarity=0.220 Sum_probs=183.2
Q ss_pred CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH------HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 594769986300239999999999999988510132237899------99988158976632999999999999999842
Q 000275 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEIL------VRLVCMLPGWSEKNVQVQQQVIEVINYLAATA 674 (1739)
Q Consensus 601 l~~~~i~~~L~ss~WK~Rl~a~e~l~~~v~~~~~~~~~~e~L------vr~l~~~PgwkesNfqV~~~~leil~~la~~~ 674 (1739)
-+| +.++|.|++||+|++|+|++.+.+..........+.+ .+.+. ..++|+|++|+++.++++..++...
T Consensus 11 klp--l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lk--k~l~DsN~~v~~~al~~l~~~~~~~ 86 (278)
T 4ffb_C 11 TLP--LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFA--QYITDSNVVAQEQAIVALNSLIDAF 86 (278)
T ss_dssp CCC--HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHH--HHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred CCC--HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 099--777520681899999999999998638655553067999999899999--9854544999999999999999985
Q ss_pred CC------CCCCCHHHHCCCHHHC-CCCCH--HHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 89------9732044330000001-11200--016899999999975164-76999999765215990469999999999
Q 000275 675 TK------FPKKCVVLCLLGISER-VADIK--TRAHAMKCLTTFSEAVGP-GFIFERLYKIMKDHKNPKVLSEGILWMVS 744 (1739)
Q Consensus 675 ~~------fs~~~~~~~l~~lveK-lgD~K--~k~~a~e~L~~~aE~~~~-~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ 744 (1739)
.. ++..++..+++++++| +||.| ++..+.++++.++|...+ ..+++.+..+ .++||||++++|+.||..
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~-l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 87 ASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPF-FEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGG-GGCSCHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHH
T ss_conf 1221012025888999989999997057638999999999999998617699999999998-842687789999999999
Q ss_pred HHHHHCCCCCCHHHHHH----HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHH----HHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 99882667655376899----976406788608999999999999996307115----7642031099999999998209
Q 000275 745 AVEDFGVSHLKLKDLID----FCKDTGLQSSAAATRNATIKLLGALHKFVGPDI----KGFLADVKPALLSALDAEYEKN 816 (1739)
Q Consensus 745 ai~eFG~~~i~~K~li~----~~k~~~L~~sN~~VR~aai~Ll~~ly~~~G~~l----~~~l~d~kpall~~ie~Ef~K~ 816 (1739)
++.+||...+++++.++ ++.++ |+++|+.||++|++++++||+|+|+.+ .+||+++||+++++|+++|+|+
T Consensus 166 ~l~~fg~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~ 244 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKV 244 (278)
T ss_dssp HHHHHTTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99984987688144799999999999-81786999999999999999996843445556666118999999999999866
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 9999989854444555
Q 000275 817 PFEGTVVPKKTVRASE 832 (1739)
Q Consensus 817 ~~~~~p~p~R~~r~~~ 832 (1739)
++++||+|+|+.+.++
T Consensus 245 ~~~~~~~~~~~~~~~~ 260 (278)
T 4ffb_C 245 GDEPSSSKMLFEWEKR 260 (278)
T ss_dssp CC-------CCHHHHH
T ss_pred CCCCCCCCCCHHHHHH
T ss_conf 7999999850366575
No 6
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=262.11 Aligned_cols=227 Identities=15% Similarity=0.186 Sum_probs=210.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHH-HHHHCCCCCC--CCCCCCHHHHHHHHC-CHHHHHHHHHHH
Q ss_conf 999999655446675789841289983888999999999-9987135778--898342378775310-203486899999
Q 000275 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK-ILEEANKRIQ--PAGTGELFGGLRGRL-YDSNKNLVMATL 916 (1739)
Q Consensus 841 ~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~-il~~ankrI~--p~~~geL~~aLk~Rl-~DsNk~lv~~al 916 (1739)
..|++++|||.++|+++|...+.++||++|+||++++.. +++. +++|. ...|++++.+|++.+ +|+|.+++..|+
T Consensus 4 ~~d~~~~~~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~ 82 (249)
T 2qk1_A 4 MASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82 (249)
T ss_dssp SCCCCCCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 57616714665517720787851687999999999999999745-98656674239999999999833589899999999
Q ss_pred HHHHHHHHHCC-HHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC------C-HHHHHHHHHHHHHCCCCCC
Q ss_conf 99999998509-2367-522301587987715683669999999999999961------4-0233588999972155891
Q 000275 917 ITLGAVASAMG-PAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV------H-LDKMVPYVTTALTDAKLGA 987 (1739)
Q Consensus 917 ~ii~~iA~amG-~~~~-k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~------g-l~~~~~~i~~~L~~~~~~p 987 (1739)
++++.+|+++| +.|. +|...++|+++++++|+|+.||+++..|++++++.+ + ++.+++.+..+|.++ ||
T Consensus 83 ~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~ 160 (249)
T 2qk1_A 83 QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TP 160 (249)
T ss_dssp HHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC--CH
T ss_conf 9999999762654541878999999999987379779999999999999997301235776999999999987699--83
Q ss_pred CHHHHHHHHHHHHHCCCCCC-----CCH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHH
Q ss_conf 11899999999973369998-----642-443557762047899879999999999999961888999874016932499
Q 000275 988 EGRKDLFDWLSKQLTGLSGF-----PDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1061 (1739)
Q Consensus 988 ~~r~e~l~wL~~~l~~~~~~-----~~~-~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~ 1061 (1739)
..|.+++.||.+.+...+.. +.. ..++..+..+|.|.+.+||++|.++++.+++++|.+.|.+++.+|++.++.
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ 240 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999876785066889879999999999866998999999999999999981978789999987088999
Q ss_pred HHHHHHHHC
Q ss_conf 999999840
Q 000275 1062 LILERIKLN 1070 (1739)
Q Consensus 1062 ~i~~~l~ka 1070 (1739)
+|.++++++
T Consensus 241 ki~~~~~~~ 249 (249)
T 2qk1_A 241 KIEETVKTL 249 (249)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHCC
T ss_conf 999987459
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=247.40 Aligned_cols=994 Identities=14% Similarity=0.143 Sum_probs=528.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 8000148677467899999999984102899861-345111101221278899999999999999999727222335677
Q 000275 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDN-RIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (1739)
Q Consensus 15 pl~erl~hK~WKaRl~ayeel~~~f~~~~d~~d~-~~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~~~~ 93 (1739)
.+-+++.+.+.-.|..|.+++.+.++.-.-..++ ....+...+-+.+.|.|..++..++.++..++...+. .....
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~~ 86 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVET 86 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH---HHHHH
T ss_conf 999755898785999999999999741665787567999999999986699989999999999999975879---89999
Q ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCC------------HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 87999975204-882237889999999984010------------2549999999851-057122878999999999961
Q 000275 94 VCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA------------VDVFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEF 159 (1739)
Q Consensus 94 v~~~lveK~l~-~r~~tk~~a~e~~l~~vE~e~------------~~~v~e~ll~~~~-~K~PKvv~aai~~l~~~l~~F 159 (1739)
+++.+.+- |. ..+..+..+..++-.+++.-. ...++..|..++. +.++.++.+++.++.+.+..|
T Consensus 87 i~~~Ll~~-l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTN-MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHH-TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999998-66983889999999999999967974444411788999999999998757884679999999999999982
Q ss_pred CCCCCC-HHHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 988669-2678852235323668569998999999998751891114788513429999999999970479988852214
Q 000275 160 GAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIR 238 (1739)
Q Consensus 160 G~k~v~-~K~ilk~l~~lf~~~dk~VR~ea~~L~velyrwiG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~R 238 (1739)
|....+ ...++..+-+.+.|.+..||..+...+..+....+... ++.+=+
T Consensus 166 ~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-----~~~~l~------------------------ 216 (1230)
T 1u6g_C 166 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-----FVDLIE------------------------ 216 (1230)
T ss_dssp CSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHH------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH-----HHHHHH------------------------
T ss_conf 767788799999999998759968999999999999998568999-----999999------------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHH-CC
Q ss_conf 577596421100257999999888889999899555689565568787013565320169-4999999999997541-59
Q 000275 239 AEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATK-WSERKDAVAELTKLAS-TK 316 (1739)
Q Consensus 239 s~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~K-WkeRkEaLe~L~~l~~-~p 316 (1739)
.+...+.... |..|..+++.+..+.. .+
T Consensus 217 --------------------------------------------------~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~ 246 (1230)
T 1u6g_C 217 --------------------------------------------------HLLSELSKNDSMSTTRTYIQCIAAISRQAG 246 (1230)
T ss_dssp --------------------------------------------------HHHHHHHHTCSSCSCTTHHHHHHHHHHHSS
T ss_pred --------------------------------------------------HHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf --------------------------------------------------999986167755689999999999999868
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-
Q ss_conf 9999992699999998713211899999999999999871010110034159999998214787899999999999998-
Q 000275 317 RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK- 395 (1739)
Q Consensus 317 ki~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~- 395 (1739)
+.-.....+++..+...+.|.+-.+-..++.+++.+++-++..|.+|...++|.++..++.. +... . +.-+.+..
T Consensus 247 ~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d-~~~~--~-~~d~~~~~~ 322 (1230)
T 1u6g_C 247 HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYD-PNYN--Y-DDEDEDENA 322 (1230)
T ss_dssp GGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC-CCCC--C-CCCCCCCCC
T ss_conf 98998899999999998668977899999999999999784877776899999999982789-9888--7-644110112
Q ss_pred HCCC-CHHHHH--HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 3379-846569--9999986248943389899999999940883688785554689998650789978899999999999
Q 000275 396 AGCL-NLVDVV--EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1739)
Q Consensus 396 ~~~~-~l~~~~--e~i~~al~~KnP~vk~et~~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1739)
.... .-++.. ++....-....+.+|...+..+.......+. .+......++|.+...+.|++++||.++..+++.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l 401 (1230)
T 1u6g_C 323 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE-MLPEFYKTVSPALISRFKEREENVKADVFHAYLSL 401 (1230)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHHTTCCT-THHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 23344653011001366645556779999999999999974666-79999999989999871798657999999999999
Q ss_pred HHHHCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99829067889762079999999999982489999888887555688999998777630343333220025999998888
Q 000275 473 AKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552 (1739)
Q Consensus 473 ~k~vGe~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 552 (1739)
.+..|.-. + ...+ . . ..+
T Consensus 402 ~~~~~~~~-----~------------~~~~--------~---------------~---------------~~~------- 419 (1230)
T 1u6g_C 402 LKQTRPVQ-----S------------WLCD--------P---------------D---------------AME------- 419 (1230)
T ss_dssp HHHHCCC-------------------------------------------------------------------------
T ss_pred HHHHCCCC-----C------------CCCC--------C---------------C---------------CCC-------
T ss_conf 99724243-----4------------3467--------5---------------2---------------013-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 87789999899888999875466677899888989999988999980459476998630023999999999999998851
Q 000275 553 ASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV 632 (1739)
Q Consensus 553 ~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~ss~WK~Rl~a~e~l~~~v~~~ 632 (1739)
+.+-..+.....+ ..+-+.+...|.+.+|+.|.+++..+...+...
T Consensus 420 ---------------------------------~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~ 465 (1230)
T 1u6g_C 420 ---------------------------------QGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 465 (1230)
T ss_dssp ----------------------------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred ---------------------------------CCCCHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf ---------------------------------5645599999874-699999999861377879999999999999976
Q ss_pred H-CCCHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 0-13223789999988158976632--99999999999999984289973204433000000111200016899999999
Q 000275 633 Q-NLDQSVEILVRLVCMLPGWSEKN--VQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTF 709 (1739)
Q Consensus 633 ~-~~~~~~e~Lvr~l~~~PgwkesN--fqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~k~~a~e~L~~~ 709 (1739)
. ......+-++..+.. ..+|++ ..|....+..+..+.... +... +..+
T Consensus 466 ~~~l~~~l~~ll~~l~~--~L~d~~~~~~v~~~a~~~l~~~~~~~---~~~~------------------------~~~~ 516 (1230)
T 1u6g_C 466 PGALTQHIPVLVPGIIF--SLNDKSSSSNLKIDALSCLYVILCNH---SPQV------------------------FHPH 516 (1230)
T ss_dssp TTTTGGGHHHHHHHHHH--HTTCSSSCHHHHHHHHHHHHHHHHSS---CGGG------------------------GHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHCCCCCCCHHHHHHHHHHHHHHHHC---CHHH------------------------HHHH
T ss_conf 11057779999999999--97487885168999999999999838---9887------------------------8867
Q ss_pred HHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC------CCCC--HHHHHHHHHHHCC--CCCCHHHHHHH
Q ss_conf 975164769999997652159904699999999999988266------7655--3768999764067--88608999999
Q 000275 710 SEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV------SHLK--LKDLIDFCKDTGL--QSSAAATRNAT 779 (1739)
Q Consensus 710 aE~~~~~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ai~eFG~------~~i~--~K~li~~~k~~~L--~~sN~~VR~aa 779 (1739)
. +-++..++.. .+.++++++.+++..+...++.||. ..+. ...++..+-.. + .+.++.||.+|
T Consensus 517 l-----~~llp~L~~~-l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~-l~~~d~~~~vr~~a 589 (1230)
T 1u6g_C 517 V-----QALVPPVVAC-VGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKR-LKAADIDQEVKERA 589 (1230)
T ss_dssp H-----TTTHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHH-HSCSSSCHHHHHHH
T ss_pred H-----HHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCHHHHHHH
T ss_conf 9-----9999999999-714246899999999999998716755565323278999999999998-73269988999999
Q ss_pred HHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 999999996307115764203109999999999820999999898544--445557578899999999965544667578
Q 000275 780 IKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT--VRASESTSSVSSGGSDGLPREDISGKFTPT 857 (1739)
Q Consensus 780 i~Ll~~ly~~~G~~l~~~l~d~kpall~~ie~Ef~K~~~~~~p~p~R~--~r~~~~~~~~~~~~~d~lprvDIs~kit~~ 857 (1739)
+..+|.+-.+.|+.+..++..+=|.++..+..| .+|. ++.-..... +....+ -.++...+.+.
T Consensus 590 ~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e-----------~~r~~~~~al~~i~~-~~~~~~---~~~~~~~i~~~ 654 (1230)
T 1u6g_C 590 ISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE-----------ITRLTTVKALTLIAG-SPLKID---LRPVLGEGVPI 654 (1230)
T ss_dssp HHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS-----------SHHHHHHHHHHHHTT-CSSCCC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHH-CCCCCC---HHHHHHHHHHH
T ss_conf 999999999827032443889999999884453-----------059999999999981-856443---68889999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 98412899838889999999999987135778898342378775---310203486899999999999985092367522
Q 000275 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR---GRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1739)
Q Consensus 858 l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk---~Rl~DsNk~lv~~al~ii~~iA~amG~~~~k~~ 934 (1739)
+...+.+.+|.+|..+++.+..|+......+.. ..+...|. .-+.|.+..+...++.++..+....++.+.++.
T Consensus 655 L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~---~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~ 731 (1230)
T 1u6g_C 655 LASFLRKNQRALKLGTLSALDILIKNYSDSLTA---AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKIS 731 (1230)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCH---HHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTT
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 999998678889999999999999604333898---99999999987635754187899999999999884912677767
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 30158798771568366999999999999996140233588999972155891118999999999733699986424435
Q 000275 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1014 (1739)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~ 1014 (1739)
..+++.++..+....- +..++.++-..+ ..+.........-.+++..+.. ....
T Consensus 732 ~~~l~~~~~~l~~~~~--~~~~~~~l~~~~-------------~~l~~~~~~~~~~~~ll~~l~~---~~~~-------- 785 (1230)
T 1u6g_C 732 GSILNELIGLVRSPLL--QGGALSAMLDFF-------------QALVVTGTNNLGYMDLLRMLTG---PVYS-------- 785 (1230)
T ss_dssp TTTHHHHHHHHTCTTC--CHHHHHHHHHHH-------------HHHHTTCCTTCSHHHHHHHHST---TTTT--------
T ss_pred HHHHHHHHHHHCCCCC--CHHHHHHHHHHH-------------HHHHHCCCCCCCHHHHHHHHHC---CCCC--------
T ss_conf 7689999999758621--057899999999-------------9998347887889999999850---0357--------
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHH---HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 577620478998799999999999999618889---99874016932499999999840688888899988888888888
Q 000275 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQET---IEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSA 1091 (1739)
Q Consensus 1015 ~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~---~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~~~~~~~~~~~ 1091 (1739)
....+-...+|..+..+++.++...|... +......++..
T Consensus 786 ----~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 828 (1230)
T 1u6g_C 786 ----QSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNS--------------------------------- 828 (1230)
T ss_dssp ----C----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTT---------------------------------
T ss_pred ----CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC---------------------------------
T ss_conf ----8873200010489999999999846566689999999983788---------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98987789777766667888999875322101222211101368998688886341232234899357999999998862
Q 000275 1092 SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYF 1171 (1739)
Q Consensus 1092 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~ 1171 (1739)
. . ......-++... ++-.+ . .-|.. -++.++
T Consensus 829 ---------------------~--~------~~~~~~~~l~~l---~~~g~---~-~~~~~---~~~l~~---------- 859 (1230)
T 1u6g_C 829 ---------------------R--S------TDSIRLLALLSL---GEVGH---H-IDLSG---QLELKS---------- 859 (1230)
T ss_dssp ---------------------T--C------CHHHHHHHHHHH---HHHHH---H-SCCCS---CTHHHH----------
T ss_pred ---------------------C--C------CHHHHHHHHHHH---HHHCC---C-CCCCC---CCCHHH----------
T ss_conf ---------------------7--6------679999999999---98615---6-78765---641899----------
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 59999962241888899999999973698813566767799999988406752699999751169999998740875437
Q 000275 1172 REDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTE 1251 (1739)
Q Consensus 1172 ~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~lDlilkw~tlr~~dtN~~vl~k~Le~l~~lf~~l~~~~y~lse 1251 (1739)
.+...+.+.+-.-+.+|...|-... ..+++.++.++.-.+... +..-...|.-+..++. ..+-....
T Consensus 860 --~~~~~l~~~~~~Vr~aAa~aLg~l~-------~~~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~---~~~~~~~~ 926 (1230)
T 1u6g_C 860 --VILEAFSSPSEEVKSAASYALGSIS-------VGNLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIIS---SASVVGLK 926 (1230)
T ss_dssp --HHHHGGGCSCHHHHHHHHHHHHHHH-------HHTHHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHH---SSCSTTTH
T ss_pred --HHHHHHCCCCHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH---CCCHHHHH
T ss_conf --9999847997789999999968775-------269998899999987266-0324988999999982---38766677
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 67865656998741788378999999999987102673002799985420378035868999999999851576457632
Q 000275 1252 SEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLK 1331 (1739)
Q Consensus 1252 ~Ea~~flP~Li~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~K 1331 (1739)
-.+..++|.|+..+++.-+.+|..+-.++-.++.+.| ..++|.+.+.+++.|+-+|.-|+.-+.+++...|-.+..-.+
T Consensus 927 ~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~-~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~ 1005 (1230)
T 1u6g_C 927 PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP-ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK 1005 (1230)
T ss_dssp HHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 6699999999987338304468999988756650676-888899999856997889999999999997068233589899
Q ss_pred H-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCC
Q ss_conf 0-8999977206774689999999999998734368998216
Q 000275 1332 S-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372 (1739)
Q Consensus 1332 a-l~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~i~k~ig~ 1372 (1739)
. ++..-+++.|.|+.||.+|+.++..+-...|+-++.+++.
T Consensus 1006 ~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~ 1047 (1230)
T 1u6g_C 1006 NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT 1047 (1230)
T ss_dssp HHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 989999986489858799999999999984285768977988
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=240.92 Aligned_cols=228 Identities=18% Similarity=0.257 Sum_probs=209.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC-CHHHHHHHHHHHHHHH
Q ss_conf 999996554466757898412899838889999999999987135778898342378775310-2034868999999999
Q 000275 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLG 920 (1739)
Q Consensus 842 ~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl-~DsNk~lv~~al~ii~ 920 (1739)
.|++|++||+++|+++|++.+.|++|++|++|++.+..+++.. +.+....+++++.+|+.++ +|+|.++...|+++++
T Consensus 4 ~d~~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 4 MDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLA 82 (242)
T ss_dssp HHTTSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 7738865320017989996626387899999999999987128-888877799999999998456898999999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99985092367522301587987715683669999999999999961402335889999721558911189999999997
Q 000275 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1739)
Q Consensus 921 ~iA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~ 1000 (1739)
.++.++|+.|.+|...++|.++.+|+|+|+.||+++..++++++..++++.+++.+...|.++ ||..|.+++.||.+.
T Consensus 83 ~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 83 LLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK--NPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH
T ss_conf 999998661798999999999999768988999999999999997289999999999988489--839999999999999
Q ss_pred HCCCCC----CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 336999----864244355776204789987999999999999996188899987401693249999999984068
Q 000275 1001 LTGLSG----FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (1739)
Q Consensus 1001 l~~~~~----~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~ 1072 (1739)
+....+ .+.+..++..+..+|+|++.+||++|.++++.++.++|.+.+.+.+.+|++..+.+|.++++++..
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v 236 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEI 236 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCC
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 9871887766899999999999884699858999999999999998499999999985279999999999988887
No 9
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=237.99 Aligned_cols=218 Identities=20% Similarity=0.248 Sum_probs=197.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8899998045947699863002399999999999999885-101322378999998815897663299999999999999
Q 000275 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (1739)
Q Consensus 592 ee~e~~~~~l~~~~i~~~L~ss~WK~Rl~a~e~l~~~v~~-~~~~~~~~e~Lvr~l~~~PgwkesNfqV~~~~leil~~l 670 (1739)
|++.+++...+++++..+|+|++||.|++|++.+.+.++. .++.....|++++|++. ++.|+|++|++++|+++..+
T Consensus 37 ~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~l--r~~d~N~~v~~~~L~~L~~l 114 (266)
T 2of3_A 37 SQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL--RFFETNPAALIKVLELCKVI 114 (266)
T ss_dssp HHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHH--HTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999984559999986287799999999999988301769999999999999999--97188799999999999999
Q ss_pred HHHC----CCCCCCCHHHHCCCHHHCCCCCH--HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9842----89973204433000000111200--01689999999997516476999999765215990469999999999
Q 000275 671 AATA----TKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVS 744 (1739)
Q Consensus 671 a~~~----~~fs~~~~~~~l~~lveKlgD~K--~k~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~ae~l~wl~~ 744 (1739)
+++. ..++...+..++|.++||+||.| .|+.+++++..+++.++|++|+++++++ +.+||+|++.||+.|+.+
T Consensus 115 ~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g-~ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 115 VELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDA-LKSKNARQRSECLLVIEY 193 (266)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHG-GGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HCCCCHHHHHHHHHHHHH
T ss_conf 9999864556509899978999999828974889999999999999878999999999999-716989999999999999
Q ss_pred HHHHHCCCCCCHHHHH---HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 9988266765537689---99764067886089999999999999963071157642031099999999998209
Q 000275 745 AVEDFGVSHLKLKDLI---DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (1739)
Q Consensus 745 ai~eFG~~~i~~K~li---~~~k~~~L~~sN~~VR~aai~Ll~~ly~~~G~~l~~~l~d~kpall~~ie~Ef~K~ 816 (1739)
+|+.||.. ..+ .+ ..+-++ ++++|++||++|++.++++|+++|+.++.++++++|+.++.|++.|...
T Consensus 194 li~~~G~~--~~~-~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r~ 264 (266)
T 2of3_A 194 YITNAGIS--PLK-SLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRT 264 (266)
T ss_dssp HHHHHCSG--GGG-GGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCC--CCC-CCCCHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99862997--200-02434799998-7399878999999999999998119999988448999999999998644
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=230.95 Aligned_cols=908 Identities=15% Similarity=0.144 Sum_probs=477.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHCCHH------HHH
Q ss_conf 00014867746789999999998410289986134511110122127889999999999999999972722------233
Q 000275 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADAD------AGR 89 (1739)
Q Consensus 16 l~erl~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~------~~~ 89 (1739)
+-+.|.|++|+.|..|...+........+ +.+......+-..+.|.+..++..+..++..+....+.. ...
T Consensus 53 Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~ 129 (1230)
T 1u6g_C 53 ILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN 129 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 99986699989999999999999975879---899999999999866983889999999999999967974444411788
Q ss_pred HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 567787999975204--882237889999999984010------254999999985105712287899999999996198
Q 000275 90 YAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELEA------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA 161 (1739)
Q Consensus 90 ~~~~v~~~lveK~l~--~r~~tk~~a~e~~l~~vE~e~------~~~v~e~ll~~~~~K~PKvv~aai~~l~~~l~~FG~ 161 (1739)
...++++.+.+ ++. ..+..+..+.+++..+++.-. .+.+++.+.+.+.+.+|.|...++.++..++...|.
T Consensus 130 ~~~~llp~L~~-~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~ 208 (1230)
T 1u6g_C 130 VCKKITGRLTS-AIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN 208 (1230)
T ss_dssp HHHHHHHHHHH-HHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH
T ss_conf 99999999999-87578846799999999999999827677887999999999987599689999999999999985689
Q ss_pred CCCCHHHHHHHCHHH-HCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHH--------------HHH
Q ss_conf 866926788522353-23668569998999999998751891114788513429999999999--------------970
Q 000275 162 KIIPPKRILKMLPEL-FDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVE--------------LVN 226 (1739)
Q Consensus 162 k~v~~K~ilk~l~~l-f~~~dk~VR~ea~~L~velyrwiG~~~lk~~L~~~Lkp~q~keLe~e--------------fek 226 (1739)
..++ .++..+-.. ....+..+|..+...++++++..|.. +.+.+ +.+-|..++-+..+ |.+
T Consensus 209 ~~~~--~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l-~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 209 IVFV--DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR-IGEYL-EKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp --CT--THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG-GTTSC-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999--999999998616775568999999999999986898-99889-9999999998668977899999999999999
Q ss_pred CCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 4799-88852214577596421100257999999-88888999989-955568956556878701356532016949999
Q 000275 227 VSGT-ARPTRKIRAEQDKELGQELISEDVGPGPS-EESTADVPPEI-DEYELVDPVDILTPLEKSGFWEGVKATKWSERK 303 (1739)
Q Consensus 227 ~~~~-~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i-Dp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRk 303 (1739)
..+. -.| ++..--.. -........+...+ +....+..++. +..|.. + . .+.|..-.+..|+.|+
T Consensus 285 ~~~~~~~~--~l~~li~~--ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~---~----~--~~~~~~~~d~~~~vR~ 351 (1230)
T 1u6g_C 285 RCPKEVYP--HVSTIINI--CLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQ---G----S--DDEYSDDDDMSWKVRR 351 (1230)
T ss_dssp CTTCCCHH--HHHHHHHH--HTTCCCCC---------------------------------------------CTTHHHH
T ss_pred HCHHHHHH--HHHHHHHH--HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHH---H----C--CCCCCCCCCCCHHHHH
T ss_conf 78487777--68999999--999827899888764411011223344653011---0----0--1366645556779999
Q ss_pred HHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC-------------------CCCCH
Q ss_conf 999999975415-9999999269999999871321189999999999999987101-------------------01100
Q 000275 304 DAVAELTKLAST-KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT-------------------HFSGS 363 (1739)
Q Consensus 304 EaLe~L~~l~~~-pki~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~-------------------~F~~y 363 (1739)
.|++.+..+... +.....-|.+++..|...+.|.+-.|...+++++..+.+.++. .+..|
T Consensus 352 ~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (1230)
T 1u6g_C 352 AAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQ 431 (1230)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999997466679999999989999871798657999999999999997242434346752013564559999987
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHCCH
Q ss_conf 341599999982147878999999999999983379-----846569999998624894--3389899999999940883
Q 000275 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL-----NLVDVVEDVKTSVKNKVP--LVRSLTLNWVTFCIETSSK 436 (1739)
Q Consensus 364 ~~~~l~~lLeklKEKK~~V~eA~~~aLda~~~~~~~-----~l~~~~e~i~~al~~KnP--~vk~et~~~L~r~l~~~~~ 436 (1739)
...+++.++..++|....+|.++..++..+... +. .++.+++.+...++++++ .++.+++.++...+....+
T Consensus 432 l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~-~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~ 510 (1230)
T 1u6g_C 432 VPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV-LPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP 510 (1230)
T ss_dssp TTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-STTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 469999999986137787999999999999997-6110577799999999999748788516899999999999983898
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCH------HHHHHHHHCC-------------CHHHHHHHH
Q ss_conf 688785554689998650789978899999999999998290------6788976207-------------999999999
Q 000275 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM------RPLERSIEKL-------------DDVRRNKLS 497 (1739)
Q Consensus 437 ~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l~k~vGe------~~l~~~l~~L-------------d~~kk~KI~ 497 (1739)
..+.+.+..++|.++.+++|++..||..+..+++.+++.+|+ ..+.+|++.+ +..-|....
T Consensus 511 ~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~ 590 (1230)
T 1u6g_C 511 QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAI 590 (1230)
T ss_dssp GGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 87886799999999999714246899999999999998716755565323278999999999998732699889999999
Q ss_pred HHH----HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998----2489999888887555688999998777630343333220025999998888877899998998889998754
Q 000275 498 EMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQE 573 (1739)
Q Consensus 498 e~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~ 573 (1739)
.++ ...|.. . . +. -+...+.=.. .. ..... ..++.. +-..-.
T Consensus 591 ~~lg~L~~~~g~~-~--~--------------~~--~~~~l~~L~~-~l--~~e~~-----------r~~~~~-al~~i~ 636 (1230)
T 1u6g_C 591 SCMGQIICNLGDN-L--G--------------SD--LPNTLQIFLE-RL--KNEIT-----------RLTTVK-ALTLIA 636 (1230)
T ss_dssp HHHHHHHHHTGGG-C--C--------------TH--HHHHHHHHHH-HT--TSSSH-----------HHHHHH-HHHHHT
T ss_pred HHHHHHHHHHCCH-H--H--------------HH--HHHHHHHHHH-HH--CCCHH-----------HHHHHH-HHHHHH
T ss_conf 9999999982703-2--4--------------43--8899999998-84--45305-----------999999-999998
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-CCCC
Q ss_conf 666778998889899999889999804594769986300239999999999999988510132237899999881-5897
Q 000275 574 TSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCM-LPGW 652 (1739)
Q Consensus 574 ~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~ss~WK~Rl~a~e~l~~~v~~~~~~~~~~e~Lvr~l~~-~Pgw 652 (1739)
.+ .. +.. .+.-+..++ +.+...+.+.+|..|.++++.+...+....... ..+.+...+.. .|.+
T Consensus 637 ~~--~~------~~~-----~~~~~~~i~-~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~-~~~~v~~~l~~ll~ll 701 (1230)
T 1u6g_C 637 GS--PL------KID-----LRPVLGEGV-PILASFLRKNQRALKLGTLSALDILIKNYSDSL-TAAMIDAVLDELPPLI 701 (1230)
T ss_dssp TC--SS------CCC-----CHHHHHHHH-HHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTC-CHHHHHHHHTTCGGGS
T ss_pred HC--CC------CCC-----HHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHC
T ss_conf 18--56------443-----688899999-999999986788899999999999996043338-9899999999987635
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHH----C----HHHHHHHHH-
Q ss_conf 6632999999999999999842899732044330000001112000168999999999751----6----476999999-
Q 000275 653 SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV----G----PGFIFERLY- 723 (1739)
Q Consensus 653 kesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~k~~a~e~L~~~aE~~----~----~~~V~~~l~- 723 (1739)
.+.++++....++++..+....+.........+++.++..+........+.+.+..+.... . ..-++..++
T Consensus 702 ~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~ 781 (1230)
T 1u6g_C 702 SESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTG 781 (1230)
T ss_dssp CTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
T ss_conf 75418789999999999988491267776776899999997586210578999999999998347887889999999850
Q ss_pred ----------------------H----------------HHHHCCCHHHHHHHHHHHHHHHHHHCCC-CCC-HHHHHHHH
Q ss_conf ----------------------7----------------6521599046999999999999882667-655-37689997
Q 000275 724 ----------------------K----------------IMKDHKNPKVLSEGILWMVSAVEDFGVS-HLK-LKDLIDFC 763 (1739)
Q Consensus 724 ----------------------~----------------~~~~~KnPKv~ae~l~wl~~ai~eFG~~-~i~-~K~li~~~ 763 (1739)
. .....++|......-.|...++.++|.. .+. ...+++.+
T Consensus 782 ~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~~ 861 (1230)
T 1u6g_C 782 PVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVI 861 (1230)
T ss_dssp TTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 03578873200010489999999999846566689999999983788766799999999999861567876564189999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--C-CCCCCCC
Q ss_conf 640678860899999999999999630711576420310999999999982099999989854444555--7-5788999
Q 000275 764 KDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASE--S-TSSVSSG 840 (1739)
Q Consensus 764 k~~~L~~sN~~VR~aai~Ll~~ly~~~G~~l~~~l~d~kpall~~ie~Ef~K~~~~~~p~p~R~~r~~~--~-~~~~~~~ 840 (1739)
.++ |.++++.||++|...+|.+.. | .+ ...-|.+++.|+.+ + ..|...-.. + ... .+
T Consensus 862 ~~~-l~~~~~~Vr~aAa~aLg~l~~--~-~~----~~~lp~ll~~l~~~---------~-~~~~~~l~al~e~i~~--~~ 921 (1230)
T 1u6g_C 862 LEA-FSSPSEEVKSAASYALGSISV--G-NL----PEYLPFVLQEITSQ---------P-KRQYLLLHSLKEIISS--AS 921 (1230)
T ss_dssp HHG-GGCSCHHHHHHHHHHHHHHHH--H-TH----HHHHHHHHHHHHSC---------G-GGHHHHHHHHHHHHHS--SC
T ss_pred HHH-HCCCCHHHHHHHHHHHHHHHC--C-CH----HHHHHHHHHHHHCC---------C-HHHHHHHHHHHHHHHC--CC
T ss_conf 998-479977899999999687752--6-99----98899999987266---------0-3249889999999823--87
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99999965544667578984128998388899999999999871357788983423787753102034868999999999
Q 000275 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLG 920 (1739)
Q Consensus 841 ~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~Rl~DsNk~lv~~al~ii~ 920 (1739)
.++.-|. ..+|.+.|+..+++.+|.+|..+-+.+..++... ..++++.|..++.|+|..+...++.++.
T Consensus 922 ~~~~~~~---~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~--------~~~l~p~l~~~l~~~~~~~R~~~~~~l~ 990 (1230)
T 1u6g_C 922 VVGLKPY---VENIWALLLKHCECAEEGTRNVVAECLGKLTLID--------PETLLPRLKGYLISGSSYARSSVVTAVK 990 (1230)
T ss_dssp STTTHHH---HHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS--------GGGTHHHHTTTSSSSCHHHHHHHHHHTG
T ss_pred HHHHHHH---HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 6667766---9999999998733830446899998875665067--------6888899999856997889999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99985092367522301587987715683669999999999999961402335889999721558911189999999997
Q 000275 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1739)
Q Consensus 921 ~iA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~ 1000 (1739)
.+...+++.+..|.+.++++++..|.|....||.+++.++..++...+ +.+.+.+ .+++..|-..
T Consensus 991 ~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~-~~~~~~l--------------~~~lp~l~~~ 1055 (1230)
T 1u6g_C 991 FTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP-SLIRDLL--------------DTVLPHLYNE 1055 (1230)
T ss_dssp GGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCG-GGTGGGH--------------HHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCH-HHHHHHH--------------HHHHHHHHHH
T ss_conf 997068233589899989999986489858799999999999984285-7689779--------------8898999988
Q ss_pred HCCCCCCCCHHHHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 336999864244355-7762047899879999999999999961
Q 000275 1001 LTGLSGFPDAAHLLK-PASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1739)
Q Consensus 1001 l~~~~~~~~~~~~~~-p~~~~L~Dr~~dVRkaA~~~L~~~m~~~ 1043 (1739)
....+++...+. .-|.+..|++.+|||+|.+++.+++.+.
T Consensus 1056 ---~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~ 1096 (1230)
T 1u6g_C 1056 ---TKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSC 1096 (1230)
T ss_dssp ---TSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSS
T ss_pred ---HCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ---30268760133058960236774899999999999999988
Done!