BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000277
         (1733 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54G05|LRRX1_DICDI Putative leucine-rich repeat-containing protein DDB_G0290503
            OS=Dictyostelium discoideum GN=DDB_G0290503 PE=4 SV=1
          Length = 1492

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 170/376 (45%), Gaps = 67/376 (17%)

Query: 829  DRIILPVNSVFKEPLEKVNWIASYINECHDTKTQLEQELGNVKQEASALASELAETQSTM 888
            D++ L +N +  E LEK+N I    N+  D + Q+ +    + ++ + L S+  +    +
Sbjct: 425  DQLQLKLNDISNELLEKLNDINQLSNKLQDKENQILEINNKLNEKENQLISKDNQLNQLI 484

Query: 889  KSLEDALSVAEDKITQLAD---EKRQVEVGKKNVEEELEKAIEEAHIQTSKFAEACASRK 945
            ++ E +    + K+ QL+D   EK +  +  ++V  EL+  + E     +K  E   + +
Sbjct: 485  ENNESSSDELKLKLNQLSDELQEKDEKLLNNQSVINELQSNLNENQ---NKINELIENNQ 541

Query: 946  SLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLED 1005
            S  DE+ +  N +S  + EK+E   S  ++++E    R+E              I  L+D
Sbjct: 542  SSSDELKLKLNQLSDKLQEKDEKLKSLESSIIE----RDE-------------KIDQLQD 584

Query: 1006 SLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALS 1065
            +L + +  +  L E N    ++S      +L Q+ ++   +  KL    + I  L+  L+
Sbjct: 585  NLNEKQDKINELVENN----ESSSDELQSKLIQLSDQLQEKDEKLLNNQSIINELQSNLN 640

Query: 1066 QVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLA----DAHTTIKSMEDALL 1121
            + +  +  L E N              Q   DE  S+ +KL+    D +  ++S+E +++
Sbjct: 641  ENQNKINELIENN--------------QSSSDELNSKLIKLSDELKDKNENVRSLETSII 686

Query: 1122 KAK---------NDISVLEGEKRISDQEVSA-------------LNSKLNACRDELAGTI 1159
            + +         N ++V E + +++++E++              L SKLN  ++E+   I
Sbjct: 687  ENQDKLDQLIQSNQVTVNELQSKLNEKEININQLIENNQSSLDELQSKLNEKQNEINQLI 746

Query: 1160 GSLESRSVELIGHLND 1175
             + +S S EL   LN+
Sbjct: 747  ENNQSSSDELQSKLNE 762


>sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1
          Length = 2474

 Score = 34.7 bits (78), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 2/65 (3%)

Query: 708 ALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEK-NSEIEKLK 766
           AL+EE ES+   L+  E++  LL EKL  A+K+ K L Q+++NLK QL E   +E ++L+
Sbjct: 891 ALREELESRDSSLQSVEKEKVLLTEKLQQALKEVKALTQEKKNLK-QLQESLQTERDQLR 949

Query: 767 LNLQE 771
            ++Q+
Sbjct: 950 SDIQD 954


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.125    0.323 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 559,885,432
Number of Sequences: 539616
Number of extensions: 23280528
Number of successful extensions: 154875
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 3534
Number of HSP's that attempted gapping in prelim test: 109243
Number of HSP's gapped (non-prelim): 26081
length of query: 1733
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1601
effective length of database: 120,340,147
effective search space: 192664575347
effective search space used: 192664575347
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 69 (31.2 bits)