Query 000277
Match_columns 1733
No_of_seqs 754 out of 2108
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:27:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 100.0 1.2E-54 2.6E-59 582.3 123.6 624 849-1561 1236-1899(1930)
2 PF01576 Myosin_tail_1: Myosin 100.0 9.7E-53 2.1E-57 554.8 -1.5 626 847-1561 176-841 (859)
3 KOG0996 Structural maintenance 100.0 4.5E-29 9.7E-34 312.1 86.0 637 240-913 214-969 (1293)
4 COG1196 Smc Chromosome segrega 100.0 2.2E-26 4.7E-31 318.1 95.9 132 1297-1443 968-1107(1163)
5 TIGR00606 rad50 rad50. This fa 100.0 2.2E-22 4.8E-27 281.7 110.4 387 851-1254 744-1162(1311)
6 KOG0161 Myosin class II heavy 100.0 1.9E-16 4.1E-21 215.9 135.6 442 876-1348 1446-1906(1930)
7 TIGR02169 SMC_prok_A chromosom 99.9 4.2E-20 9.2E-25 261.7 95.7 132 1296-1443 976-1115(1164)
8 KOG4674 Uncharacterized conser 99.9 1.4E-12 2.9E-17 175.3 154.2 189 1416-1620 1252-1454(1822)
9 TIGR02168 SMC_prok_B chromosom 99.9 9E-15 2E-19 208.0 97.0 73 259-333 139-221 (1179)
10 KOG0933 Structural maintenance 99.9 7.8E-14 1.7E-18 173.9 83.8 617 260-923 144-866 (1174)
11 KOG4674 Uncharacterized conser 99.8 3.2E-10 7E-15 153.0 151.1 75 709-783 659-733 (1822)
12 TIGR02168 SMC_prok_B chromosom 99.8 2.3E-11 5E-16 173.3 104.2 134 1297-1445 980-1132(1179)
13 KOG0964 Structural maintenance 99.8 1.5E-11 3.3E-16 153.1 77.7 45 607-652 524-583 (1200)
14 KOG0962 DNA repair protein RAD 99.8 1.3E-09 2.7E-14 143.3 99.4 159 1086-1254 974-1149(1294)
15 TIGR00606 rad50 rad50. This fa 99.8 1.7E-08 3.7E-13 143.0 125.1 33 275-307 300-332 (1311)
16 TIGR02169 SMC_prok_A chromosom 99.8 6.8E-11 1.5E-15 168.2 92.9 117 528-645 427-569 (1164)
17 KOG0018 Structural maintenance 99.8 5.7E-12 1.2E-16 159.4 68.7 504 260-787 128-752 (1141)
18 COG1196 Smc Chromosome segrega 99.7 1E-09 2.2E-14 153.3 97.6 120 525-645 422-563 (1163)
19 KOG0964 Structural maintenance 99.7 1.3E-11 2.9E-16 153.5 62.5 358 975-1375 333-795 (1200)
20 KOG0996 Structural maintenance 99.7 2.5E-08 5.4E-13 127.9 91.9 90 701-790 374-463 (1293)
21 PF10174 Cast: RIM-binding pro 99.6 1.7E-08 3.7E-13 130.8 82.3 71 527-599 73-146 (775)
22 PF01576 Myosin_tail_1: Myosin 99.6 3.5E-17 7.6E-22 217.8 2.2 670 845-1593 132-856 (859)
23 PRK02224 chromosome segregatio 99.6 1.2E-08 2.5E-13 140.7 84.7 17 1426-1442 813-829 (880)
24 PF10174 Cast: RIM-binding pro 99.6 8.6E-07 1.9E-11 115.3 90.0 135 689-830 286-424 (775)
25 PRK03918 chromosome segregatio 99.5 3E-07 6.5E-12 127.1 84.1 55 243-303 114-178 (880)
26 KOG0933 Structural maintenance 99.5 1.4E-06 3E-11 110.5 89.0 117 1306-1440 994-1120(1174)
27 KOG0018 Structural maintenance 99.5 7.9E-07 1.7E-11 114.0 76.0 395 992-1442 653-1091(1141)
28 PRK01156 chromosome segregatio 99.5 1E-06 2.2E-11 121.5 78.8 61 242-306 113-185 (895)
29 PRK03918 chromosome segregatio 99.4 1.4E-05 3.1E-10 110.5 85.1 8 1277-1284 819-826 (880)
30 PRK01156 chromosome segregatio 99.3 2.6E-05 5.7E-10 107.8 77.8 13 1200-1212 728-740 (895)
31 PRK04863 mukB cell division pr 99.2 0.00028 6E-09 99.2 97.5 21 626-646 711-731 (1486)
32 PF12128 DUF3584: Protein of u 99.1 0.0005 1.1E-08 97.2 76.6 71 751-821 311-382 (1201)
33 KOG0250 DNA repair protein RAD 99.0 0.00021 4.6E-09 93.4 60.5 43 54-99 40-82 (1074)
34 PF12128 DUF3584: Protein of u 98.9 0.0032 6.8E-08 89.2 89.5 14 90-103 68-81 (1201)
35 KOG0250 DNA repair protein RAD 98.8 0.0021 4.6E-08 84.4 79.3 40 1391-1440 988-1027(1074)
36 KOG0994 Extracellular matrix g 98.7 0.0041 8.8E-08 80.4 55.4 66 701-766 1229-1294(1758)
37 KOG4643 Uncharacterized coiled 98.7 0.0034 7.5E-08 80.8 53.5 33 1545-1577 877-909 (1195)
38 PF07888 CALCOCO1: Calcium bin 98.6 0.0022 4.8E-08 80.0 48.9 15 1164-1178 438-452 (546)
39 PRK04863 mukB cell division pr 98.6 0.015 3.3E-07 82.3 99.3 41 1114-1154 1063-1103(1486)
40 PF05701 WEMBL: Weak chloropla 98.6 0.0072 1.6E-07 77.9 68.4 138 1009-1147 292-429 (522)
41 PF07888 CALCOCO1: Calcium bin 98.6 0.0042 9E-08 77.7 48.6 35 849-883 288-322 (546)
42 PF05701 WEMBL: Weak chloropla 98.5 0.014 3E-07 75.3 69.1 44 692-735 36-79 (522)
43 PRK04778 septation ring format 98.5 0.016 3.5E-07 75.8 55.9 19 842-860 254-272 (569)
44 COG0419 SbcC ATPase involved i 98.4 0.034 7.4E-07 77.1 83.9 64 241-304 118-195 (908)
45 PF00261 Tropomyosin: Tropomyo 98.4 0.00029 6.2E-09 81.5 31.3 33 933-965 69-101 (237)
46 PRK04778 septation ring format 98.4 0.025 5.4E-07 74.1 58.5 57 1156-1212 440-497 (569)
47 PF00261 Tropomyosin: Tropomyo 98.4 0.00038 8.2E-09 80.5 30.8 99 1052-1150 117-215 (237)
48 KOG4643 Uncharacterized coiled 98.3 0.037 7.9E-07 71.9 61.3 13 1425-1437 900-912 (1195)
49 PF05483 SCP-1: Synaptonemal c 98.3 0.03 6.6E-07 70.0 80.7 53 1292-1344 707-763 (786)
50 KOG0994 Extracellular matrix g 98.3 0.052 1.1E-06 70.8 59.4 36 704-739 1225-1260(1758)
51 KOG0977 Nuclear envelope prote 98.2 0.0061 1.3E-07 76.2 37.8 112 851-962 106-217 (546)
52 KOG0976 Rho/Rac1-interacting s 98.2 0.055 1.2E-06 68.1 68.6 20 1618-1642 894-913 (1265)
53 KOG0971 Microtubule-associated 98.2 0.07 1.5E-06 68.3 48.5 54 1045-1098 494-547 (1243)
54 PF00038 Filament: Intermediat 98.1 0.038 8.3E-07 67.0 42.8 40 950-989 97-136 (312)
55 PF00038 Filament: Intermediat 98.1 0.053 1.1E-06 65.8 44.2 25 845-869 12-36 (312)
56 KOG0977 Nuclear envelope prote 98.1 0.015 3.3E-07 72.8 38.3 75 1109-1183 294-372 (546)
57 KOG0976 Rho/Rac1-interacting s 98.0 0.13 2.9E-06 64.9 68.1 34 1165-1198 460-497 (1265)
58 PRK10246 exonuclease subunit S 97.9 0.33 7.1E-06 68.3 89.2 67 241-307 131-211 (1047)
59 KOG0978 E3 ubiquitin ligase in 97.9 0.19 4.2E-06 64.9 75.2 100 1056-1155 511-610 (698)
60 KOG0612 Rho-associated, coiled 97.8 0.32 7E-06 65.1 47.9 61 1103-1163 720-780 (1317)
61 PF06160 EzrA: Septation ring 97.7 0.43 9.3E-06 62.4 58.8 14 773-786 59-72 (560)
62 PF15070 GOLGA2L5: Putative go 97.6 0.49 1.1E-05 61.7 50.9 26 1118-1143 286-311 (617)
63 KOG0995 Centromere-associated 97.6 0.37 8.1E-06 60.1 43.6 134 699-832 230-366 (581)
64 PF05557 MAD: Mitotic checkpoi 97.6 0.00026 5.6E-09 95.1 12.7 41 779-819 286-326 (722)
65 PF05483 SCP-1: Synaptonemal c 97.6 0.46 9.9E-06 60.0 98.7 17 318-334 78-94 (786)
66 PF05557 MAD: Mitotic checkpoi 97.5 0.00036 7.7E-09 93.8 12.2 16 1187-1202 623-638 (722)
67 COG0419 SbcC ATPase involved i 97.5 1.1 2.3E-05 62.6 79.6 9 1277-1285 848-856 (908)
68 PF09726 Macoilin: Transmembra 97.4 0.14 3E-06 67.7 33.3 70 1084-1153 588-657 (697)
69 KOG0946 ER-Golgi vesicle-tethe 97.4 0.31 6.7E-06 62.5 33.3 94 151-270 5-103 (970)
70 PF06160 EzrA: Septation ring 97.4 1.1 2.3E-05 58.8 61.7 20 955-974 284-303 (560)
71 PF05622 HOOK: HOOK protein; 97.3 5E-05 1.1E-09 101.6 0.0 14 633-646 143-156 (713)
72 PF09726 Macoilin: Transmembra 97.3 0.23 5E-06 65.7 32.5 15 1000-1014 547-561 (697)
73 PHA02562 46 endonuclease subun 97.2 0.093 2E-06 69.1 29.4 17 1000-1016 257-273 (562)
74 PHA02562 46 endonuclease subun 97.2 0.44 9.6E-06 62.8 34.8 22 845-866 300-321 (562)
75 PF05667 DUF812: Protein of un 97.2 0.85 1.8E-05 59.4 35.5 47 1109-1155 489-535 (594)
76 PF15070 GOLGA2L5: Putative go 97.1 1.8 3.9E-05 56.7 52.7 41 695-735 27-67 (617)
77 KOG4673 Transcription factor T 97.1 1.5 3.3E-05 55.2 67.4 32 1119-1150 719-750 (961)
78 PF14915 CCDC144C: CCDC144C pr 97.1 0.93 2E-05 52.5 42.9 212 929-1151 71-297 (305)
79 KOG0946 ER-Golgi vesicle-tethe 97.0 0.77 1.7E-05 59.1 31.2 34 1063-1096 849-882 (970)
80 KOG1003 Actin filament-coating 97.0 0.8 1.7E-05 49.7 27.8 79 940-1018 79-157 (205)
81 PF05622 HOOK: HOOK protein; 96.9 0.0002 4.4E-09 95.9 0.0 10 498-507 37-46 (713)
82 KOG1003 Actin filament-coating 96.8 1 2.2E-05 49.0 27.8 48 1107-1154 140-187 (205)
83 PF09730 BicD: Microtubule-ass 96.8 3.3 7.2E-05 54.6 68.3 61 400-460 39-103 (717)
84 PF09730 BicD: Microtubule-ass 96.8 3.4 7.4E-05 54.5 68.7 40 560-599 265-304 (717)
85 PF05667 DUF812: Protein of un 96.8 2.2 4.7E-05 55.7 34.2 21 763-783 397-417 (594)
86 PF09728 Taxilin: Myosin-like 96.8 2.1 4.5E-05 51.6 44.0 82 1069-1150 216-297 (309)
87 KOG0995 Centromere-associated 96.8 2.7 5.9E-05 52.9 48.4 32 982-1013 444-475 (581)
88 KOG0962 DNA repair protein RAD 96.7 5.3 0.00012 55.2 114.8 27 281-307 269-295 (1294)
89 KOG0978 E3 ubiquitin ligase in 96.7 3.9 8.5E-05 53.4 72.3 64 372-435 60-123 (698)
90 PF13514 AAA_27: AAA domain 96.5 8.1 0.00018 55.3 98.5 61 789-850 548-608 (1111)
91 PF12718 Tropomyosin_1: Tropom 96.5 0.49 1.1E-05 50.2 21.5 60 939-998 77-136 (143)
92 KOG4673 Transcription factor T 96.4 4.4 9.5E-05 51.4 66.9 39 1038-1076 715-753 (961)
93 PF14662 CCDC155: Coiled-coil 96.4 2.1 4.6E-05 46.8 28.6 44 850-893 7-50 (193)
94 PF14915 CCDC144C: CCDC144C pr 96.3 3.2 7E-05 48.2 44.7 105 941-1046 150-261 (305)
95 COG1579 Zn-ribbon protein, pos 96.2 1.3 2.9E-05 50.5 23.9 60 861-920 20-79 (239)
96 PF14662 CCDC155: Coiled-coil 96.2 2.6 5.6E-05 46.1 28.9 36 1027-1062 88-123 (193)
97 PF04849 HAP1_N: HAP1 N-termin 96.2 4 8.7E-05 48.3 28.6 11 1138-1148 275-285 (306)
98 PF12718 Tropomyosin_1: Tropom 96.2 0.88 1.9E-05 48.4 21.0 12 1082-1093 121-132 (143)
99 TIGR03185 DNA_S_dndD DNA sulfu 96.2 4.2 9.1E-05 54.6 32.8 79 347-428 210-288 (650)
100 KOG4593 Mitotic checkpoint pro 96.0 7.7 0.00017 50.0 64.1 141 997-1138 383-523 (716)
101 PF09728 Taxilin: Myosin-like 95.8 6.3 0.00014 47.5 43.6 67 1084-1150 210-276 (309)
102 PRK09039 hypothetical protein; 95.8 1.7 3.7E-05 53.2 24.3 24 1126-1149 159-182 (343)
103 PF13514 AAA_27: AAA domain 95.7 19 0.0004 51.7 97.7 31 441-471 297-327 (1111)
104 PRK09039 hypothetical protein; 95.5 2.6 5.5E-05 51.7 24.4 61 960-1020 120-180 (343)
105 KOG0963 Transcription factor/C 95.3 13 0.00027 47.6 49.6 37 883-919 186-222 (629)
106 PF05010 TACC: Transforming ac 95.3 6.5 0.00014 44.3 31.5 70 950-1019 70-139 (207)
107 PF05911 DUF869: Plant protein 95.2 18 0.00038 48.7 64.8 62 865-926 596-657 (769)
108 PF10473 CENP-F_leu_zip: Leuci 95.1 5 0.00011 42.2 21.3 47 857-903 16-62 (140)
109 KOG0612 Rho-associated, coiled 95.1 21 0.00046 48.9 68.3 82 983-1065 699-780 (1317)
110 PF10473 CENP-F_leu_zip: Leuci 94.9 5 0.00011 42.3 20.8 90 1054-1143 23-112 (140)
111 KOG1029 Endocytic adaptor prot 94.9 17 0.00037 47.1 39.8 8 979-986 446-453 (1118)
112 PF05010 TACC: Transforming ac 94.9 8.5 0.00018 43.4 29.6 35 1062-1096 104-138 (207)
113 KOG0963 Transcription factor/C 94.8 17 0.00037 46.5 50.9 48 1134-1181 385-435 (629)
114 COG4372 Uncharacterized protei 94.7 13 0.00028 44.4 35.0 6 1137-1142 271-276 (499)
115 KOG0979 Structural maintenance 94.6 25 0.00055 47.3 68.6 130 1297-1438 861-997 (1072)
116 COG4372 Uncharacterized protei 94.4 15 0.00033 43.9 34.8 38 1085-1122 240-277 (499)
117 PF15619 Lebercilin: Ciliary p 94.2 12 0.00025 42.1 27.1 24 1039-1062 123-146 (194)
118 COG4477 EzrA Negative regulato 93.9 24 0.00051 44.5 51.9 34 1029-1062 377-410 (570)
119 KOG0980 Actin-binding protein 93.7 34 0.00073 45.5 34.6 49 1023-1071 427-475 (980)
120 KOG0980 Actin-binding protein 93.6 35 0.00075 45.4 38.9 12 894-905 334-345 (980)
121 TIGR03185 DNA_S_dndD DNA sulfu 93.6 37 0.00081 45.7 43.6 76 691-769 210-285 (650)
122 COG3883 Uncharacterized protei 93.5 19 0.0004 42.0 28.8 47 950-996 46-92 (265)
123 COG5185 HEC1 Protein involved 93.4 26 0.00055 43.1 42.1 29 965-993 370-398 (622)
124 PF15619 Lebercilin: Ciliary p 93.2 17 0.00037 40.8 27.6 24 958-981 70-93 (194)
125 COG5185 HEC1 Protein involved 92.4 34 0.00073 42.1 41.4 14 635-648 109-122 (622)
126 PRK11281 hypothetical protein; 91.9 76 0.0016 44.9 44.0 51 849-899 126-176 (1113)
127 TIGR00618 sbcc exonuclease Sbc 91.7 83 0.0018 44.9 92.3 67 241-307 127-207 (1042)
128 PF07111 HCR: Alpha helical co 91.5 56 0.0012 42.7 75.3 83 795-878 194-276 (739)
129 PF09755 DUF2046: Uncharacteri 91.3 38 0.00081 40.3 39.2 93 945-1044 109-202 (310)
130 PF04849 HAP1_N: HAP1 N-termin 91.1 40 0.00087 40.2 29.8 97 1047-1143 205-301 (306)
131 PF06818 Fez1: Fez1; InterPro 90.8 31 0.00068 38.5 20.8 145 1035-1179 32-185 (202)
132 KOG4593 Mitotic checkpoint pro 90.0 74 0.0016 41.6 68.9 23 1232-1254 666-688 (716)
133 PF10481 CENP-F_N: Cenp-F N-te 89.4 38 0.00082 39.1 19.5 24 1189-1212 167-190 (307)
134 PF10481 CENP-F_N: Cenp-F N-te 89.1 24 0.00053 40.5 17.8 15 1029-1043 76-90 (307)
135 PF06008 Laminin_I: Laminin Do 89.1 55 0.0012 38.7 33.5 44 848-891 21-64 (264)
136 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.7 34 0.00074 35.9 18.9 88 695-782 8-95 (132)
137 PF09789 DUF2353: Uncharacteri 88.4 66 0.0014 38.8 26.8 32 956-987 147-178 (319)
138 PF08614 ATG16: Autophagy prot 88.4 3.1 6.8E-05 46.7 10.7 62 1074-1135 114-175 (194)
139 PF13851 GAS: Growth-arrest sp 87.7 55 0.0012 37.1 25.8 29 1071-1099 95-123 (201)
140 PF05911 DUF869: Plant protein 86.6 1.4E+02 0.003 40.6 63.3 71 923-993 598-668 (769)
141 TIGR03007 pepcterm_ChnLen poly 85.1 81 0.0018 41.0 22.8 25 846-870 163-187 (498)
142 PF12325 TMF_TATA_bd: TATA ele 84.5 18 0.00039 37.3 12.7 38 749-786 19-56 (120)
143 TIGR01005 eps_transp_fam exopo 83.8 1.1E+02 0.0024 42.0 24.2 24 847-870 197-220 (754)
144 PF10498 IFT57: Intra-flagella 83.2 32 0.00068 42.5 16.4 107 985-1109 214-320 (359)
145 smart00787 Spc7 Spc7 kinetocho 83.1 1.2E+02 0.0026 36.9 29.4 47 1105-1151 233-283 (312)
146 PF12325 TMF_TATA_bd: TATA ele 82.7 63 0.0014 33.4 15.7 9 980-988 99-107 (120)
147 PF13870 DUF4201: Domain of un 82.4 85 0.0018 34.7 22.5 9 1127-1135 154-162 (177)
148 PF11559 ADIP: Afadin- and alp 82.1 77 0.0017 34.0 20.1 66 662-727 38-103 (151)
149 KOG0804 Cytoplasmic Zn-finger 81.5 64 0.0014 39.9 17.5 37 1114-1150 385-421 (493)
150 COG3883 Uncharacterized protei 81.5 1.2E+02 0.0025 35.7 29.7 56 852-907 39-94 (265)
151 KOG1899 LAR transmembrane tyro 81.1 1.8E+02 0.0038 37.5 22.6 44 936-979 218-261 (861)
152 TIGR01005 eps_transp_fam exopo 80.4 1.8E+02 0.0039 40.1 24.3 8 1402-1409 564-571 (754)
153 PF08614 ATG16: Autophagy prot 79.7 27 0.00058 39.3 13.3 16 894-909 110-125 (194)
154 PF00769 ERM: Ezrin/radixin/mo 79.6 1.1E+02 0.0025 35.7 18.7 77 1037-1113 15-91 (246)
155 PF09755 DUF2046: Uncharacteri 79.4 1.5E+02 0.0032 35.6 38.0 21 1130-1150 227-247 (310)
156 PF10168 Nup88: Nuclear pore c 79.0 2.5E+02 0.0054 38.2 23.9 13 973-985 561-573 (717)
157 PF10498 IFT57: Intra-flagella 78.7 70 0.0015 39.5 17.2 15 633-647 70-84 (359)
158 PF13851 GAS: Growth-arrest sp 77.6 1.3E+02 0.0029 34.0 28.9 47 1002-1049 90-136 (201)
159 PF09787 Golgin_A5: Golgin sub 77.2 2.4E+02 0.0053 36.8 36.5 40 1109-1148 390-429 (511)
160 KOG0999 Microtubule-associated 76.6 2.2E+02 0.0048 36.1 74.0 37 746-782 43-79 (772)
161 PRK10246 exonuclease subunit S 76.4 3.7E+02 0.008 38.5 86.2 17 1074-1090 782-798 (1047)
162 KOG0979 Structural maintenance 76.2 3.2E+02 0.0069 37.7 63.7 40 701-740 633-672 (1072)
163 KOG1853 LIS1-interacting prote 73.7 1.7E+02 0.0037 33.4 20.8 35 412-446 136-170 (333)
164 PF10168 Nup88: Nuclear pore c 72.8 3.6E+02 0.0078 36.7 24.6 14 1070-1083 601-614 (717)
165 KOG0971 Microtubule-associated 72.7 3.5E+02 0.0076 36.6 82.1 67 661-737 377-443 (1243)
166 TIGR00634 recN DNA repair prot 71.6 3.4E+02 0.0074 36.0 27.5 13 1236-1248 419-431 (563)
167 PF10146 zf-C4H2: Zinc finger- 71.6 1.4E+02 0.0031 34.5 16.3 66 1083-1148 32-97 (230)
168 COG4477 EzrA Negative regulato 71.4 3E+02 0.0065 35.3 54.7 21 751-771 162-182 (570)
169 PF07111 HCR: Alpha helical co 71.1 3.5E+02 0.0075 35.9 73.6 31 1138-1168 588-618 (739)
170 PF10146 zf-C4H2: Zinc finger- 70.9 1.5E+02 0.0032 34.4 16.2 8 1136-1143 92-99 (230)
171 KOG1853 LIS1-interacting prote 70.3 2E+02 0.0044 32.9 23.3 23 946-968 95-117 (333)
172 PF09789 DUF2353: Uncharacteri 70.1 2.6E+02 0.0056 33.9 33.2 22 876-897 13-34 (319)
173 KOG0249 LAR-interacting protei 69.9 3.6E+02 0.0079 35.6 20.2 36 1115-1150 220-255 (916)
174 PF05384 DegS: Sensor protein 69.1 1.8E+02 0.0039 31.7 22.7 41 977-1017 27-67 (159)
175 PRK10884 SH3 domain-containing 68.9 63 0.0014 36.7 12.6 20 572-591 137-156 (206)
176 PF12777 MT: Microtubule-bindi 68.5 3E+02 0.0064 34.0 23.2 66 704-776 228-293 (344)
177 PF06005 DUF904: Protein of un 68.0 70 0.0015 29.9 10.4 63 328-390 7-69 (72)
178 KOG0804 Cytoplasmic Zn-finger 67.8 2.9E+02 0.0062 34.6 18.1 15 1033-1047 434-448 (493)
179 PF06785 UPF0242: Uncharacteri 67.2 2.8E+02 0.006 33.2 18.8 31 895-925 129-159 (401)
180 KOG2991 Splicing regulator [RN 66.8 2.4E+02 0.0052 32.4 24.6 53 1087-1139 254-306 (330)
181 COG2433 Uncharacterized conser 66.6 69 0.0015 41.2 13.2 81 748-828 424-504 (652)
182 PF15066 CAGE1: Cancer-associa 65.6 3.6E+02 0.0077 33.9 30.0 19 1034-1052 390-408 (527)
183 PRK11281 hypothetical protein; 65.5 6E+02 0.013 36.5 45.9 6 1673-1678 919-924 (1113)
184 KOG1937 Uncharacterized conser 65.0 3.6E+02 0.0078 33.7 36.0 17 1133-1149 470-486 (521)
185 KOG4360 Uncharacterized coiled 64.5 3.9E+02 0.0085 34.0 19.1 102 1043-1144 200-301 (596)
186 KOG1937 Uncharacterized conser 64.4 3.7E+02 0.008 33.6 36.5 66 949-1019 345-410 (521)
187 PF11570 E2R135: Coiled-coil r 64.3 1.8E+02 0.0039 30.1 13.9 32 1096-1127 83-114 (136)
188 PF04582 Reo_sigmaC: Reovirus 63.3 13 0.00029 44.4 6.1 56 947-1002 19-74 (326)
189 COG2433 Uncharacterized conser 62.7 1.1E+02 0.0023 39.6 13.8 50 342-391 418-467 (652)
190 PF00769 ERM: Ezrin/radixin/mo 62.7 3.1E+02 0.0067 32.2 18.7 34 961-994 80-113 (246)
191 PF11559 ADIP: Afadin- and alp 60.7 2.4E+02 0.0052 30.3 19.1 66 946-1011 56-121 (151)
192 KOG1899 LAR transmembrane tyro 59.7 5.1E+02 0.011 33.7 22.5 76 1619-1713 717-798 (861)
193 PF06005 DUF904: Protein of un 59.1 1.6E+02 0.0034 27.7 11.4 62 938-999 7-68 (72)
194 PF11932 DUF3450: Protein of u 58.8 3.3E+02 0.0072 31.9 16.8 8 1173-1180 133-140 (251)
195 PF10186 Atg14: UV radiation r 58.0 3.9E+02 0.0085 31.9 20.2 6 1209-1214 210-215 (302)
196 KOG0288 WD40 repeat protein Ti 57.3 4.5E+02 0.0097 32.6 17.0 36 1023-1058 44-79 (459)
197 KOG4603 TBP-1 interacting prot 56.7 1.1E+02 0.0025 32.8 10.7 22 636-657 9-30 (201)
198 COG4026 Uncharacterized protei 55.9 1.1E+02 0.0023 34.4 10.7 43 853-895 137-179 (290)
199 KOG0249 LAR-interacting protei 55.7 6.3E+02 0.014 33.5 23.5 30 1617-1646 762-794 (916)
200 PRK10929 putative mechanosensi 55.2 8.5E+02 0.018 34.9 47.3 16 1082-1097 339-354 (1109)
201 PRK15422 septal ring assembly 55.2 1.9E+02 0.0042 27.4 10.9 45 1109-1153 30-74 (79)
202 TIGR03017 EpsF chain length de 54.9 5.6E+02 0.012 32.7 23.8 13 977-989 261-273 (444)
203 PF15290 Syntaphilin: Golgi-lo 54.7 3.3E+02 0.0071 32.0 14.7 31 1066-1096 72-102 (305)
204 PF15254 CCDC14: Coiled-coil d 54.6 6.9E+02 0.015 33.6 26.7 115 845-962 428-542 (861)
205 PRK10884 SH3 domain-containing 54.3 1.6E+02 0.0035 33.5 12.4 36 564-599 122-157 (206)
206 PF08826 DMPK_coil: DMPK coile 54.0 1.7E+02 0.0037 26.5 10.1 51 965-1015 6-56 (61)
207 KOG2991 Splicing regulator [RN 53.4 4.1E+02 0.0089 30.7 24.4 23 810-832 182-204 (330)
208 TIGR02680 conserved hypothetic 53.1 1E+03 0.022 35.2 77.2 27 281-307 224-250 (1353)
209 PF05278 PEARLI-4: Arabidopsis 52.7 4.6E+02 0.0099 31.0 16.3 100 1043-1150 161-260 (269)
210 PF09738 DUF2051: Double stran 52.4 2.4E+02 0.0051 34.1 14.0 57 320-376 79-135 (302)
211 KOG4809 Rab6 GTPase-interactin 52.1 6.3E+02 0.014 32.5 37.7 49 1022-1071 389-437 (654)
212 PF15066 CAGE1: Cancer-associa 51.9 5.9E+02 0.013 32.1 30.1 72 895-966 364-435 (527)
213 PF14073 Cep57_CLD: Centrosome 51.8 3.7E+02 0.0081 29.7 22.7 23 1070-1092 128-150 (178)
214 PF12329 TMF_DNA_bd: TATA elem 51.6 2.1E+02 0.0045 27.0 10.7 34 1110-1143 32-65 (74)
215 PF11932 DUF3450: Protein of u 51.1 3.5E+02 0.0077 31.7 15.4 12 1205-1216 153-164 (251)
216 PF15397 DUF4618: Domain of un 50.9 4.8E+02 0.01 30.7 33.5 31 1074-1104 191-221 (258)
217 PF04949 Transcrip_act: Transc 50.3 3.4E+02 0.0074 28.9 14.0 108 500-614 31-138 (159)
218 KOG0239 Kinesin (KAR3 subfamil 49.6 6.1E+02 0.013 34.3 18.6 85 1543-1661 557-646 (670)
219 PF09738 DUF2051: Double stran 49.2 3.3E+02 0.0071 32.9 14.5 50 853-902 79-128 (302)
220 PF12795 MscS_porin: Mechanose 49.1 4.9E+02 0.011 30.3 24.9 52 855-906 82-133 (240)
221 PF12329 TMF_DNA_bd: TATA elem 49.0 1.9E+02 0.0041 27.3 10.0 31 957-987 13-43 (74)
222 PF08826 DMPK_coil: DMPK coile 48.5 1.7E+02 0.0036 26.6 9.0 49 1292-1340 11-59 (61)
223 PF14992 TMCO5: TMCO5 family 48.4 5.4E+02 0.012 30.6 16.4 31 801-831 14-44 (280)
224 KOG1850 Myosin-like coiled-coi 47.4 5.7E+02 0.012 30.6 45.4 27 1067-1093 248-274 (391)
225 PF06785 UPF0242: Uncharacteri 46.2 6.1E+02 0.013 30.6 21.7 12 1139-1150 201-212 (401)
226 PF08647 BRE1: BRE1 E3 ubiquit 46.1 3.1E+02 0.0067 27.2 13.1 12 1002-1013 28-39 (96)
227 COG3074 Uncharacterized protei 46.1 2.4E+02 0.0052 25.9 10.6 46 1106-1151 27-72 (79)
228 PF14197 Cep57_CLD_2: Centroso 45.9 2.4E+02 0.0053 26.2 10.0 51 859-909 6-56 (69)
229 TIGR01000 bacteriocin_acc bact 45.2 7.9E+02 0.017 31.6 23.8 20 1029-1048 293-312 (457)
230 PRK15422 septal ring assembly 45.1 2.8E+02 0.0061 26.4 10.7 13 1056-1068 19-31 (79)
231 PF10267 Tmemb_cc2: Predicted 42.6 4.2E+02 0.0092 33.2 14.5 50 366-415 268-318 (395)
232 KOG4438 Centromere-associated 42.1 8E+02 0.017 30.8 44.4 7 639-645 14-20 (446)
233 PF12777 MT: Microtubule-bindi 41.0 7.8E+02 0.017 30.4 22.1 28 844-871 8-35 (344)
234 PRK10929 putative mechanosensi 41.0 1.3E+03 0.029 33.1 49.0 17 854-870 68-84 (1109)
235 TIGR02338 gimC_beta prefoldin, 40.7 4E+02 0.0088 27.0 14.0 39 579-617 8-46 (110)
236 PLN02939 transferase, transfer 39.9 1.3E+03 0.028 32.6 31.8 67 407-473 224-290 (977)
237 PRK10869 recombination and rep 39.8 1E+03 0.022 31.4 28.3 15 1235-1249 408-422 (553)
238 PF15294 Leu_zip: Leucine zipp 39.3 7.3E+02 0.016 29.6 16.7 128 856-993 130-276 (278)
239 PF03962 Mnd1: Mnd1 family; I 39.1 5.6E+02 0.012 28.7 13.7 24 405-428 138-161 (188)
240 PF04012 PspA_IM30: PspA/IM30 37.9 6.7E+02 0.014 28.7 22.7 48 946-993 27-74 (221)
241 KOG4809 Rab6 GTPase-interactin 37.8 1E+03 0.022 30.8 39.7 35 1064-1098 523-557 (654)
242 COG1842 PspA Phage shock prote 37.6 7E+02 0.015 28.9 20.3 46 946-991 28-73 (225)
243 KOG4807 F-actin binding protei 37.5 8.5E+02 0.018 29.8 29.6 40 1165-1204 524-574 (593)
244 PRK09343 prefoldin subunit bet 35.8 5.2E+02 0.011 26.8 15.3 44 574-617 7-50 (121)
245 PF07106 TBPIP: Tat binding pr 35.7 4.1E+02 0.0089 29.1 11.9 56 522-577 73-133 (169)
246 PF05266 DUF724: Protein of un 35.6 6.9E+02 0.015 28.1 17.4 46 1053-1098 129-174 (190)
247 KOG4360 Uncharacterized coiled 35.3 1.1E+03 0.023 30.3 25.0 15 1246-1261 433-447 (596)
248 PF02183 HALZ: Homeobox associ 34.8 1.1E+02 0.0024 25.9 5.4 40 1296-1335 2-41 (45)
249 PF13166 AAA_13: AAA domain 33.7 1.4E+03 0.03 31.1 28.7 11 605-615 30-40 (712)
250 PF13166 AAA_13: AAA domain 33.6 1.4E+03 0.03 31.1 28.6 13 689-701 95-107 (712)
251 PF11172 DUF2959: Protein of u 33.1 7.6E+02 0.016 27.9 20.6 13 1085-1097 98-110 (201)
252 PF09787 Golgin_A5: Golgin sub 30.8 1.3E+03 0.029 30.1 38.9 43 1087-1129 389-431 (511)
253 PF05266 DUF724: Protein of un 30.6 8.2E+02 0.018 27.5 15.8 19 760-778 159-177 (190)
254 KOG1962 B-cell receptor-associ 30.2 7.3E+02 0.016 28.4 12.5 45 1106-1150 160-204 (216)
255 PF15290 Syntaphilin: Golgi-lo 29.9 9.9E+02 0.022 28.3 16.2 13 894-906 90-102 (305)
256 PF12795 MscS_porin: Mechanose 29.9 9.3E+02 0.02 28.0 25.6 25 965-989 40-64 (240)
257 PF07106 TBPIP: Tat binding pr 29.5 4.6E+02 0.01 28.7 11.1 27 1092-1118 81-107 (169)
258 PRK10698 phage shock protein P 29.3 9.3E+02 0.02 27.8 24.7 48 946-993 28-75 (222)
259 PRK04406 hypothetical protein; 28.8 3.9E+02 0.0085 25.3 8.7 20 1043-1062 13-32 (75)
260 KOG0972 Huntingtin interacting 28.8 1E+03 0.022 28.1 16.7 10 987-996 223-232 (384)
261 PF04912 Dynamitin: Dynamitin 28.7 1.3E+03 0.027 29.1 27.0 35 1062-1096 329-363 (388)
262 KOG0972 Huntingtin interacting 28.6 9.4E+02 0.02 28.5 13.1 25 1113-1137 275-299 (384)
263 PF14073 Cep57_CLD: Centrosome 28.0 8.7E+02 0.019 27.0 22.9 36 852-887 58-93 (178)
264 PF05276 SH3BP5: SH3 domain-bi 27.4 1E+03 0.023 27.7 30.3 209 914-1122 14-223 (239)
265 PF06818 Fez1: Fez1; InterPro 27.1 9.6E+02 0.021 27.2 23.6 36 979-1014 12-47 (202)
266 cd00632 Prefoldin_beta Prefold 27.0 6.5E+02 0.014 25.2 14.1 8 661-668 49-56 (105)
267 PF15450 DUF4631: Domain of un 26.9 1.5E+03 0.032 29.3 61.1 26 745-770 47-72 (531)
268 PRK09841 cryptic autophosphory 26.6 1.6E+03 0.034 30.8 17.7 18 972-989 269-286 (726)
269 KOG1962 B-cell receptor-associ 25.9 1E+03 0.023 27.2 13.5 43 1106-1148 167-209 (216)
270 TIGR03752 conj_TIGR03752 integ 25.6 6.8E+02 0.015 32.0 12.4 39 699-737 68-106 (472)
271 cd00632 Prefoldin_beta Prefold 25.5 6.9E+02 0.015 25.0 12.7 22 849-870 11-32 (105)
272 PF15035 Rootletin: Ciliary ro 25.1 9.9E+02 0.022 26.7 19.0 54 1120-1173 83-136 (182)
273 PF03962 Mnd1: Mnd1 family; I 25.0 1E+03 0.022 26.7 14.5 20 1130-1149 140-159 (188)
274 KOG3809 Microtubule-binding pr 25.0 1.4E+03 0.031 28.5 15.2 22 281-302 441-462 (583)
275 PF03233 Cauli_AT: Aphid trans 24.9 2.4E+02 0.0052 30.6 7.2 79 1615-1694 58-136 (163)
276 PF10205 KLRAQ: Predicted coil 24.4 6.9E+02 0.015 25.2 9.7 28 709-736 10-37 (102)
277 KOG0999 Microtubule-associated 24.0 1.7E+03 0.036 28.9 76.8 36 399-434 40-75 (772)
278 PF15397 DUF4618: Domain of un 24.0 1.2E+03 0.027 27.4 31.8 29 760-788 81-109 (258)
279 PRK11519 tyrosine kinase; Prov 23.4 2E+03 0.044 29.7 18.6 6 1207-1212 544-549 (719)
280 PF04859 DUF641: Plant protein 22.8 1.8E+02 0.0039 30.6 5.7 42 166-218 80-121 (131)
281 PRK04325 hypothetical protein; 22.6 2.6E+02 0.0056 26.4 6.3 46 166-215 2-47 (74)
282 PF10205 KLRAQ: Predicted coil 22.3 8.1E+02 0.018 24.7 11.4 64 980-1044 8-71 (102)
283 PF15456 Uds1: Up-regulated Du 22.2 9.1E+02 0.02 25.2 12.3 23 937-959 24-46 (124)
284 PF05377 FlaC_arch: Flagella a 21.3 4.7E+02 0.01 23.3 7.0 31 523-553 2-32 (55)
285 PF04012 PspA_IM30: PspA/IM30 20.5 1.3E+03 0.028 26.3 23.9 8 853-860 32-39 (221)
286 PF10234 Cluap1: Clusterin-ass 20.4 1.5E+03 0.032 27.0 19.3 142 900-1042 120-261 (267)
287 TIGR02449 conserved hypothetic 20.4 6.9E+02 0.015 23.1 8.8 59 1294-1352 2-60 (65)
288 PLN02939 transferase, transfer 20.0 2.6E+03 0.056 29.7 33.8 50 782-831 241-290 (977)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.2e-54 Score=582.28 Aligned_cols=624 Identities=19% Similarity=0.263 Sum_probs=533.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000277 849 IASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIE 928 (1733)
Q Consensus 849 l~~~i~~Le~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele~~i~~L~ke~~~le~~~~el~~eLe~~~~ 928 (1733)
+...++.++.++.++..+++.+.+.+.++.....++..++..+.+.+++.+..++.+.+....++.++..++.
T Consensus 1236 ~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~------- 1308 (1930)
T KOG0161|consen 1236 LEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKR------- 1308 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3345577889999999999999999999999999999999999999999999999999999888877777655
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000277 929 EAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEA-YKTIKSLEDSL 1007 (1733)
Q Consensus 929 el~~l~~~leEl~~~~~~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~klee~-~~~ieeLee~l 1007 (1733)
.+.+..+....+.+.+.+++.+++.+++++++.+..+..+.+.+++++.++.+|+++++.. ...++++++.+
T Consensus 1309 -------qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~k 1381 (1930)
T KOG0161|consen 1309 -------QLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELK 1381 (1930)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899999999999999999999999999999999999999999999999999855 55699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000277 1008 AQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTT 1087 (1733)
Q Consensus 1008 ~kle~~l~~l~ee~~ee~~~~~~~lE~el~~lq~Ele~l~~~l~~~~~~i~~Le~el~~~~~~l~~l~~e~~~~e~~l~e 1087 (1733)
+.+..+++.++.. ++.+...+..+++.+.++++++.++..++......+..| ..+++.|++.+.+
T Consensus 1382 k~l~~~lq~~qe~-~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~l--------------e~k~k~f~k~l~e 1446 (1930)
T KOG0161|consen 1382 KKLQQRLQELEEQ-IEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAAL--------------EKKQKRFEKLLAE 1446 (1930)
T ss_pred HHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 9999999999999 899999999999999999999999997666555555544 4488999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHhhHHh
Q 000277 1088 LENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLN---ACRDELAGTIGSLES 1164 (1733)
Q Consensus 1088 lk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~---kl~~Ele~~~~~le~ 1164 (1733)
|+.....+..+++..+.+.+...+.+..+...++++...++.+.++++.+..++.++..++. +..+++++....++.
T Consensus 1447 ~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~ 1526 (1930)
T KOG0161|consen 1447 WKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQ 1526 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887 788899999999999
Q ss_pred HHHHHHHHHHHHHHHH--------hchhHHHHHHHHHHHHHHHH--------hhHHHHHHHHHhchhc--cccccccccc
Q 000277 1165 RSVELIGHLNDLQMHM--------KDERLLSAVKSCFERKIEGL--------QNMELIVEDIRIGVVG--KGSAVTEGNS 1226 (1733)
Q Consensus 1165 ~~~el~~~leele~~l--------k~~~~l~~ik~e~er~l~~l--------r~~~~~iedL~~~l~a--~~raIm~~a~ 1226 (1733)
.+.+++..+.+++..+ +....+++++.++++.+..+ +++++.+++|++.|++ ++|+ +++
T Consensus 1527 e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~---e~~ 1603 (1930)
T KOG0161|consen 1527 EKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKS---EAL 1603 (1930)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHH
Confidence 9999999999999864 34457899999999999654 9999999999999999 8888 889
Q ss_pred cccccccccccccccccccccccchhhhhHHHHHhHHHHHHhhhhhhhhHhHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000277 1227 DVTKSFMDDIDNIEMYDNEVTVLDADDITSCFRKTAEGFQMRTKILTDTFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQ 1306 (1733)
Q Consensus 1227 ~~kKkle~dlN~iEl~~~~~~~~~~D~i~k~~rk~~~~~~~r~~~l~~~l~e~~~~~d~~i~~~~~~~~~~e~e~~~~~e 1306 (1733)
+++|||++|||+|+++++++|+..+|++ |++|+++.++ ++||.++++.+.+.++.... ...++..+..+..
T Consensus 1604 r~KKkle~di~elE~~ld~ank~~~d~~-K~lkk~q~~~----k~lq~~~e~~~~~~~e~~~q----~~~aerr~~~l~~ 1674 (1930)
T KOG0161|consen 1604 RSKKKLEGDINELEIQLDHANKANEDAQ-KQLKKLQAQL----KELQRELEDAQRAREELLEQ----LAEAERRLAALQA 1674 (1930)
T ss_pred hhhhhhhcchHHHHHHHHHHHHhhHHHH-HHHHhhHHHH----HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 9999999999999999999999999994 9999997777 67777777777655543322 2444555555556
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCchhhhhhhhhhccCCCCccccccc
Q 000277 1307 CMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLLSACIDATRELQFEVKNNLLELNSVPELENLNRGFSQPESKVDGDDT 1386 (1733)
Q Consensus 1307 ~~e~L~~ql~~le~~k~~LE~~i~~Le~el~e~~~~~~~~~~e~~~e~~~~ll~~~e~~eLesl~~~l~~~~~kle~~i~ 1386 (1733)
..+.|+..+..+.+.++.++.++.++...+....++. +++...|+|++++|.
T Consensus 1675 E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~----------------------------s~l~~~KrklE~~i~ 1726 (1930)
T KOG0161|consen 1675 ELEELREKLEALERARRQAELELEELAERVNELNAQN----------------------------SSLTAEKRKLEAEIA 1726 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc----------------------------cchhhHHHHHHHHHH
Confidence 6666666666666666666666666555554443221 111222233333333
Q ss_pred cch------hccc--CcccH---HHHHHHHHHHHHhhCChhhhhhhhhccchhhhHHHHhhhcchHHHHHhhhhhhhhhh
Q 000277 1387 TDH------QKSL--HGNRY---HEAAENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDTTTAYEKVKDERDLHQ 1455 (1733)
Q Consensus 1387 ~l~------~~~~--~~~~~---~~~a~~L~~el~~e~~~~~~le~~k~~le~~ikeLq~rLdEaE~~~~~~~~e~~~~k 1455 (1733)
+++ ++++ ++.++ ...|..++.+|..+|++++|++++|++|+++|+||+.+|+++|+++.+| |+
T Consensus 1727 ~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~------~k 1800 (1930)
T KOG0161|consen 1727 QLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKG------GK 1800 (1930)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc------cH
Confidence 333 1222 12222 2347788889999999999999999999999999999999999999999 99
Q ss_pred HHHHhHHhhHHHHHHH----HHHHHHhHHHHHHHHHHhhHhHHHHhhhhhhhhhHHHhhhhcCCCHHHHHHHHHhhc-cc
Q 000277 1456 NKVSKLESDVDALEHS----CKELRLKVEDLEAKEEKLKENEAKISLLYDRLSRKEQEAEGLFLSPLQIRKLVDKIS-GI 1530 (1733)
Q Consensus 1456 k~i~~LE~rv~~Le~e----~~~~~~~~k~~r~~e~~lke~~~~~~~~~~~~~q~ee~~~~~~~~~~~~~~l~dK~~-~~ 1530 (1733)
++|++||+||++||++ .+++.+++|++|++||++||+++ |+++| ++|..+++++|||++ ++
T Consensus 1801 ~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~----------q~eed----~k~~~~~q~~~dkl~~k~ 1866 (1930)
T KOG0161|consen 1801 KQIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQF----------QVEED----KKNIERLQDLVDKLQAKI 1866 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHH----------Hhhhh----hhHHHHHHHHHHHHHHHH
Confidence 9999999999999999 67888999999999999999944 89999 999999999999999 99
Q ss_pred ccc--ccccCCCCCCCchHHHHHHHHHhhhccc
Q 000277 1531 EIP--YAESAGDEEPESSAIVKKLFSIINSATK 1561 (1733)
Q Consensus 1531 ~~~--~~e~~~~~~~~~~~~~~k~~~~~~~~~~ 1561 (1733)
++| |++++|+++++++++||++||.+++++.
T Consensus 1867 ~~~krQleeaE~~~~~~~~k~R~~q~ele~a~e 1899 (1930)
T KOG0161|consen 1867 KQYKRQLEEAEEEANQNLSKYRKLQRELEEAEE 1899 (1930)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999864
No 2
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=100.00 E-value=9.7e-53 Score=554.78 Aligned_cols=626 Identities=19% Similarity=0.246 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000277 847 NWIASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKA 926 (1733)
Q Consensus 847 ~~l~~~i~~Le~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele~~i~~L~ke~~~le~~~~el~~eLe~~ 926 (1733)
....+.++.++.++.++..+++...+.++++.....++..++..+...+.+.+..+..+.+....+..++.+++.
T Consensus 176 ~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~----- 250 (859)
T PF01576_consen 176 QEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKR----- 250 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----
Confidence 344556778888899999999999999999999999999999999999999999999988888777766666554
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000277 927 IEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTE-AYKTIKSLED 1005 (1733)
Q Consensus 927 ~~el~~l~~~leEl~~~~~~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~klee-~~~~ieeLee 1005 (1733)
.+++.......+...+..+..++..+..++++....+..+...+++++.++..|+++++. ....++.+++
T Consensus 251 ---------~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEe 321 (859)
T PF01576_consen 251 ---------QLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEE 321 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------HHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 667788888999999999999999999999999999999999999999999999999985 4555899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000277 1006 SLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGK 1085 (1733)
Q Consensus 1006 ~l~kle~~l~~l~ee~~ee~~~~~~~lE~el~~lq~Ele~l~~~l~~~~~~i~~Le~el~~~~~~l~~l~~e~~~~e~~l 1085 (1733)
..+++..++..+... ++.+...+..+++.+.+++.++.++...+....... ..+.++++.|+..+
T Consensus 322 aKKkL~~~L~el~e~-le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~--------------~~LeKKqr~fDk~l 386 (859)
T PF01576_consen 322 AKKKLERKLQELQEQ-LEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAA--------------AELEKKQRKFDKQL 386 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhHHHHH
Confidence 999999999999999 899999999999999999999999987665554444 44555899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHhhH
Q 000277 1086 TTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLN---ACRDELAGTIGSL 1162 (1733)
Q Consensus 1086 ~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~---kl~~Ele~~~~~l 1162 (1733)
.+|+..+..+..+++.+..+.+.+.++++.+...++++...+..+.+.++.+..++.++..+++ +.+|++.+..+.|
T Consensus 387 ~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~L 466 (859)
T PF01576_consen 387 AEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRL 466 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998887 6678999999999
Q ss_pred HhHHHHHHHHHHHHHHHH--------hchhHHHHHHHHHHHHHHH--------HhhHHHHHHHHHhchhc--cccccccc
Q 000277 1163 ESRSVELIGHLNDLQMHM--------KDERLLSAVKSCFERKIEG--------LQNMELIVEDIRIGVVG--KGSAVTEG 1224 (1733)
Q Consensus 1163 e~~~~el~~~leele~~l--------k~~~~l~~ik~e~er~l~~--------lr~~~~~iedL~~~l~a--~~raIm~~ 1224 (1733)
+....++...+.+++..+ +....+++++..|+|.+.. ++++++.|++|+..|+. ++|+ .
T Consensus 467 E~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~---~ 543 (859)
T PF01576_consen 467 EQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERA---E 543 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHH---H
Confidence 999999999999998875 3556899999999999976 49999999999999999 8888 8
Q ss_pred cccccccccccccccccccccccccchhhhhHHHHHhHHHHHHhhhhhhhhHhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000277 1225 NSDVTKSFMDDIDNIEMYDNEVTVLDADDITSCFRKTAEGFQMRTKILTDTFEHFSVSIDEFIAALLRKLQTTRDEVVRM 1304 (1733)
Q Consensus 1225 a~~~kKkle~dlN~iEl~~~~~~~~~~D~i~k~~rk~~~~~~~r~~~l~~~l~e~~~~~d~~i~~~~~~~~~~e~e~~~~ 1304 (1733)
+++.+|||++|||+++++++++|++..+++ +++++++.++ ++|+..+++.++..++... .+..+...+..+
T Consensus 544 ~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~-k~~kk~q~ql----kdlq~~lee~~~~~~~~~~----~~~~~e~r~~~l 614 (859)
T PF01576_consen 544 ALREKKKLESDLNELEIQLDHANRANEEAQ-KQLKKLQAQL----KDLQRELEEAQRAREELRE----QLAVSERRLRAL 614 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHH----HHHhhhhHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 899999999999999999999999999995 8888885555 8888889888886665432 234445555566
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCchhhhhhhhhhccCCCCccccc
Q 000277 1305 TQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLLSACIDATRELQFEVKNNLLELNSVPELENLNRGFSQPESKVDGD 1384 (1733)
Q Consensus 1305 ~e~~e~L~~ql~~le~~k~~LE~~i~~Le~el~e~~~~~~~~~~e~~~e~~~~ll~~~e~~eLesl~~~l~~~~~kle~~ 1384 (1733)
...++.++..+..+.+.++.+++++..+...+..+.... +.+...+++++++
T Consensus 615 ~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~----------------------------~~l~~~kr~le~~ 666 (859)
T PF01576_consen 615 QAELEELREALEQAERARKQAESELDELQERLNELTSQN----------------------------SSLSEEKRKLEAE 666 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------------hhhHHHHHHHHHH
Confidence 666677777777777777777777777776666653222 1222344555555
Q ss_pred cccch------hccc--CcccHHH---HHHHHHHHHHhhCChhhhhhhhhccchhhhHHHHhhhcchHHHHHhhhhhhhh
Q 000277 1385 DTTDH------QKSL--HGNRYHE---AAENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDTTTAYEKVKDERDL 1453 (1733)
Q Consensus 1385 i~~l~------~~~~--~~~~~~~---~a~~L~~el~~e~~~~~~le~~k~~le~~ikeLq~rLdEaE~~~~~~~~e~~~ 1453 (1733)
|+.|+ ++++ +..++.+ .+..|+.+|..+|++++|++++|++|+.+|+||++||+++|+.+.+|
T Consensus 667 i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~------ 740 (859)
T PF01576_consen 667 IQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKG------ 740 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------
Confidence 55554 2222 2333333 37889999999999999999999999999999999999999999999
Q ss_pred hhHHHHhHHhhHHHHHHH----HHHHHHhHHHHHHHHHHhhHhHHHHhhhhhhhhhHHHhhhhcCCCHHHHHHHHHhhc-
Q 000277 1454 HQNKVSKLESDVDALEHS----CKELRLKVEDLEAKEEKLKENEAKISLLYDRLSRKEQEAEGLFLSPLQIRKLVDKIS- 1528 (1733)
Q Consensus 1454 ~kk~i~~LE~rv~~Le~e----~~~~~~~~k~~r~~e~~lke~~~~~~~~~~~~~q~ee~~~~~~~~~~~~~~l~dK~~- 1528 (1733)
|++.|++||+||++||++ .+++.++++.+|++||+|||+.+ |+++| ++|..+|+|++||++
T Consensus 741 ~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~----------q~ee~----~k~~~~~~d~~~kl~~ 806 (859)
T PF01576_consen 741 GKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQF----------QVEEE----RKNAERLQDLVDKLQL 806 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----------HHHhH----HHHHHHHHHHHHHHHH
Confidence 999999999999999998 77888999999999999999933 89999 999999999999999
Q ss_pred ccccc--ccccCCCCCCCchHHHHHHHHHhhhccc
Q 000277 1529 GIEIP--YAESAGDEEPESSAIVKKLFSIINSATK 1561 (1733)
Q Consensus 1529 ~~~~~--~~e~~~~~~~~~~~~~~k~~~~~~~~~~ 1561 (1733)
+|+.| ++++++++++++.++|||++|+|+++..
T Consensus 807 k~k~~krq~eeaEe~~~~~~~k~Rk~q~elee~~e 841 (859)
T PF01576_consen 807 KLKQLKRQLEEAEEEASRNLAKYRKLQRELEEAEE 841 (859)
T ss_dssp ------------------------SSSSHHHHHTC
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999764
No 3
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.5e-29 Score=312.05 Aligned_cols=637 Identities=16% Similarity=0.207 Sum_probs=393.4
Q ss_pred HhHhHHHHHHHHHHhhhhhhhcccccc-----cCc-----cccccchhhhh--hHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 000277 240 IEKDQYVEVVADRMLSYLAMVVYQGEL-----MDS-----SISGKISHVEQ--STYMLIEKYNQMLYEIYQLGQCLSKPD 307 (1733)
Q Consensus 240 ~~~~~~~e~~~~r~l~~~~nvVlQGdv-----m~~-----~~~~~i~~lE~--g~~~~~Ek~~e~~~Eie~L~~~l~e~~ 307 (1733)
+-++.|||+.||||| ||||+| |+| ++.|.|+|||| ||+.|.+.+.+...++..|...+.+..
T Consensus 214 lLk~~gIDleHNRFL------ILQGEVE~IA~MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~ 287 (1293)
T KOG0996|consen 214 LLKSHGIDLEHNRFL------ILQGEVEQIAMMKPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKE 287 (1293)
T ss_pred HHHhcCCCCccceee------eehhhHHHHHhcCCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHH
Confidence 456999999999999 999999 765 48999999999 999999999999999999999988777
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000277 308 PERRVQEQFETVFAAARDELLNLKRREEESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTK 387 (1733)
Q Consensus 308 ~~~~~~ee~a~~~~~l~~El~elk~~~~~~~e~l~~L~~E~~~L~~el~~~~~~i~~~~~el~~~~~eL~ele~~l~~l~ 387 (1733)
++++.+..++..++. -..+.+.+|.++++.+.+.-...+-.+......+...+..+..+.+.+....
T Consensus 288 ----------~~~k~~e~ek~~lE~---~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ 354 (1293)
T KOG0996|consen 288 ----------NRVKLVEKEKKALEG---PKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDEN 354 (1293)
T ss_pred ----------HHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 777777777544444 3466999999999999888888888888888999999999999999888888
Q ss_pred HHhHH-HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HhHHH
Q 000277 388 EKLSL-AVTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAE-LSKEEFIKTENLVASLQETLQ---QSNLM 462 (1733)
Q Consensus 388 eki~~-~~~k~~~l~~~~~~Lk~elee~~~ele~~~~ele~~~~~le~~e-~l~~el~~~k~~~~~L~~~~~---ek~~~ 462 (1733)
+++.. ...........+..++......+.....|..++..+..+....+ .+++-....++..+.++.... +.+.+
T Consensus 355 ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~ 434 (1293)
T KOG0996|consen 355 EKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKA 434 (1293)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhC
Confidence 88873 33334445555666666666677677777777777665555544 233333333333333333222 22222
Q ss_pred -------HHHHHHHhccCCChhhhhhhHHHHHHHHHHH----HHHHHhhhHhhHhhhHHHhhccCCCCCCchhhHHHHHH
Q 000277 463 -------LEKSEEVLAQIDIPEELQSLDMVERIKWLVS----ERHELKGISLDFYKLKDAVSLIDVPETGSFSDLESRLA 531 (1733)
Q Consensus 463 -------l~~~e~~l~~~~~~~~~~~~el~~k~~~L~e----~r~el~~~~~e~~~l~e~l~~~~~~~~~~~~ele~ei~ 531 (1733)
.++....+..+..-.......+.+-+..+.. .+.++.....++.+|...+..... .....++++.
T Consensus 435 pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~----e~~vaesel~ 510 (1293)
T KOG0996|consen 435 PEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARS----ELDVAESELD 510 (1293)
T ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 2222222222221111111222222222221 144555566667777766665533 3444566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 532 WLKESFYQAKDEANVLLDQLNRM-----------------KEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIV 594 (1733)
Q Consensus 532 ~L~~~~~~~~~e~~~l~~El~~~-----------------~~~l~~~~~~l~~~l~~~~~E~e~L~~eL~~l~~e~~e~~ 594 (1733)
.|....+.+......++..+..+ +.+...++...+..+..+..+...+...+..++++..+++
T Consensus 511 ~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 511 ILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555443 2233334444455555555555555555557777777777
Q ss_pred HHHhhhhhhhhHHHHHHHHhh----------------CCCccchhhh--------hcccCCchHHHHHHHHHHHhh----
Q 000277 595 EKANKISLEKDHMVRVLLKES----------------GTSMEDQDVA--------SQTSSDPTAIISKCIGKIREQ---- 646 (1733)
Q Consensus 595 ~~~~~~~~~~~~l~~~l~el~----------------~~~i~~y~~A--------~~~avd~~~~a~~~i~~LK~~---- 646 (1733)
...+..++ .+++...|+++. ..+ ..|++| +++||||+++|+.||++|+.+
T Consensus 591 s~~~~~~s-~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id-~kYDvAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgr 668 (1293)
T KOG0996|consen 591 SSLSSSRS-RNKVLDALMRLKESGRIPGFYGRLGDLGAID-EKYDVAISTACARLDYIVVDTIETAQECINFLKKNNLGR 668 (1293)
T ss_pred HHHHhhhh-hhHHHHHHHHHHHcCCCCccccccccccccc-hHHHHHHHHhccccceEEeccHHHHHHHHHHHHHcCCCc
Confidence 77766554 566665555443 222 259988 788899999999999999997
Q ss_pred cc--cccC--------CCccchHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Q 000277 647 TC--ASSD--------TSGADSEMLQTMQSLLYVSYQELILCQQILEEDALVRLQLNDLSN------------------- 697 (1733)
Q Consensus 647 ~~--~l~k--------~~~~~~e~~~~l~d~l~~l~~E~~~l~~~le~~~~l~~~~~~l~~------------------- 697 (1733)
+| +|++ ..+..|+-.++|+|+|.+.+.++..+||++.+++.+..+++++..
T Consensus 669 aTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G~lI 748 (1293)
T KOG0996|consen 669 ATFIILDKIKDHQKKLAPITTPENVPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGKDRRWRVVTLDGSLI 748 (1293)
T ss_pred eeEEehHhhhhhhhccCCCCCCCCcchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEEecceee
Confidence 23 6665 236667779999999999999999999999999999888888740
Q ss_pred --------------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 000277 698 --------------KLRVASEEF---GALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNS 760 (1733)
Q Consensus 698 --------------~l~~L~~el---~~l~~el~~l~~el~~~e~k~~~lre~l~~~~~k~k~l~~el~~l~~~ieel~~ 760 (1733)
.+ .+...+ .........+...+.........+.+.+.........+...+..++..+..+..
T Consensus 749 e~SGtmtGGG~~v~~g-~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~ 827 (1293)
T KOG0996|consen 749 EKSGTMTGGGKKVKGG-RMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTA 827 (1293)
T ss_pred cccccccCCCCcCCCC-CCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHH
Confidence 00 010001 111223333333333333333333333322222211122223334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 000277 761 EIEKLKLNLQEQESTISECRDQINRLSNDLDCIRKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRIILPVNSVFK 840 (1733)
Q Consensus 761 eie~lk~ei~~~e~el~~le~el~~L~~~le~l~~le~ei~~lk~e~eele~~l~e~e~~l~~l~~~i~el~~~~~~~~~ 840 (1733)
++..+...+..++..+..++..+.......+++..++..|..++.+++.+...-.. ...+..+++.|..+...
T Consensus 828 ~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e------ 900 (1293)
T KOG0996|consen 828 SVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGE------ 900 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhch------
Confidence 44444445555555555555554444455677788888899999999888644443 67788888888887642
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 841 EPLEKVNWIASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVE 913 (1733)
Q Consensus 841 ~~~~ki~~l~~~i~~Le~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele~~i~~L~ke~~~le 913 (1733)
++......++.+..++..+...+..+...+......+.+++..+..+++.+...+..+..|......+.
T Consensus 901 ----~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~ 969 (1293)
T KOG0996|consen 901 ----KVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLE 969 (1293)
T ss_pred ----hhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 223333344455555555555555555555555555555555555555555555555555544444433
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.2e-26 Score=318.12 Aligned_cols=132 Identities=18% Similarity=0.204 Sum_probs=120.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCchh--------hhh
Q 000277 1297 TRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLLSACIDATRELQFEVKNNLLELNSVP--------ELE 1368 (1733)
Q Consensus 1297 ~e~e~~~~~e~~e~L~~ql~~le~~k~~LE~~i~~Le~el~e~~~~~~~~~~e~~~e~~~~ll~~~e~~--------eLe 1368 (1733)
+-++|..+..++++|..++.++...+..+...+..+.......|..++..++..|..+|..||+||.+. -|.
T Consensus 968 Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~~~dd~l~ 1047 (1163)
T COG1196 968 AIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAELELTEPDDPLT 1047 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEeCCCCchhh
Confidence 445677788889999999999999999999999999999999999999999999999999999887665 266
Q ss_pred hhhhhccCCCCccccccccchhcccCcccHHHHHHHHHHHHHhhCChhhhhhhhhccchhhhHHHHhhhcchHHH
Q 000277 1369 NLNRGFSQPESKVDGDDTTDHQKSLHGNRYHEAAENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDTTTA 1443 (1733)
Q Consensus 1369 sl~~~l~~~~~kle~~i~~l~~~~~~~~~~~~~a~~L~~el~~e~~~~~~le~~k~~le~~ikeLq~rLdEaE~~ 1443 (1733)
+|..+.+.||+|.-+++++ +|||+.+.+|.+|.|+|.+.+| .|||.+||+++.||++=..
T Consensus 1048 ~Giei~a~ppgK~~~~l~~-----LSGGEKsLtAlAllFAi~~~~P----------aPf~vLDEVDAaLD~~Nv~ 1107 (1163)
T COG1196 1048 AGIEISARPPGKKLQSLSL-----LSGGEKSLTALALLFAIQKYRP----------APFYVLDEVDAALDDANVE 1107 (1163)
T ss_pred cCcEEEEECCCCCccchhh-----cCCcHHHHHHHHHHHHHHhhCC----------CCeeeeccchhhccHHHHH
Confidence 7999999999999999977 6999999999999999999999 9999999999999987543
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=2.2e-22 Score=281.73 Aligned_cols=387 Identities=11% Similarity=0.132 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000277 851 SYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEA 930 (1733)
Q Consensus 851 ~~i~~Le~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele~~i~~L~ke~~~le~~~~el~~eLe~~~~el 930 (1733)
..++.++..+..+...+..+...+..+...+..+...+..+.. +......|.++..++..++.++..+...+.....
T Consensus 744 ~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~-- 820 (1311)
T TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL-- 820 (1311)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--
Confidence 4556666666666666666666666666666666666655544 3334444444444444444444444333321111
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 000277 931 HIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQV----------REEFASQTSKLTEAYKTI 1000 (1733)
Q Consensus 931 ~~l~~~leEl~~~~~~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl----------~~el~~l~~klee~~~~i 1000 (1733)
..++.++...+..+...+..+...+..+...+...+..+..++..+..+ -.....|...+.++...+
T Consensus 821 ---~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el 897 (1311)
T TIGR00606 821 ---DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV 897 (1311)
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122223333333333333332222222222222222222221111111 112233444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Q 000277 1001 KSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVE-----ANVAVLT 1075 (1733)
Q Consensus 1001 eeLee~l~kle~~l~~l~ee~~ee~~~~~~~lE~el~~lq~Ele~l~~~l~~~~~~i~~Le~el~~~~-----~~l~~l~ 1075 (1733)
..+...+..+...+..+... +..+...+..+.........++......+......+..+...+..|. ..+..+.
T Consensus 898 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e 976 (1311)
T TIGR00606 898 QSLIREIKDAKEQDSPLETF-LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKE 976 (1311)
T ss_pred HHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444444444433 33333333222222221112222222222233334444444444442 2355555
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---------HHHHHHHHHHHHHHHHHH-----HHHHH
Q 000277 1076 EQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMED---------ALLKAKNDISVLEGEKRI-----SDQEV 1141 (1733)
Q Consensus 1076 ~e~~~~e~~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~---------~Lee~~~~le~Le~e~k~-----l~~Ei 1141 (1733)
.++......+..+..++..+..++..+..++.+.......+.+ .+......+..|+.++.. +..+.
T Consensus 977 ~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~ 1056 (1311)
T TIGR00606 977 TELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEH 1056 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5555555555555555555555555555555555555444444 445555556666555543 47777
Q ss_pred HHHHHHHHHHHHHHhhhHhhHHhHHHHHHHHHHHH-HHHHhchhHHHHHHHHHHHHHHHHhhHHHHHHHHHhchhccccc
Q 000277 1142 SALNSKLNACRDELAGTIGSLESRSVELIGHLNDL-QMHMKDERLLSAVKSCFERKIEGLQNMELIVEDIRIGVVGKGSA 1220 (1733)
Q Consensus 1142 ~~L~~~l~kl~~Ele~~~~~le~~~~el~~~leel-e~~lk~~~~l~~ik~e~er~l~~lr~~~~~iedL~~~l~a~~ra 1220 (1733)
..+..+++.+.....+..|.+..+..++.....+| +..|++ +...|.+.+..+.++..++.||..|..|+++|
T Consensus 1057 ~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~------a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~ 1130 (1311)
T TIGR00606 1057 QKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRD------AEEKYREMMIVMRTTELVNKDLDIYYKTLDQA 1130 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888777777888888888888877777777 345666 66899999999999999999999999999999
Q ss_pred ccccccccccccccccccc--ccccccccccchhhh
Q 000277 1221 VTEGNSDVTKSFMDDIDNI--EMYDNEVTVLDADDI 1254 (1733)
Q Consensus 1221 Im~~a~~~kKkle~dlN~i--El~~~~~~~~~~D~i 1254 (1733)
||+ ||+.| |.+||.| ++|..+|+|+++|.|
T Consensus 1131 ~~~--~~~~~--~~~~n~~~~~~w~~~~~~~~~~~i 1162 (1311)
T TIGR00606 1131 IMK--FHSMK--MEEINKIIRDLWRSTYRGQDIEYI 1162 (1311)
T ss_pred HHH--HHHHH--HHHHHHHHHHHHHHHcCccHHHHh
Confidence 999 99999 8999999 999999999999998
No 6
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.96 E-value=1.9e-16 Score=215.89 Aligned_cols=442 Identities=15% Similarity=0.164 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000277 876 ALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQTSKFAEACASRKSLEDEMSVAK 955 (1733)
Q Consensus 876 ele~el~~l~~e~e~le~eLeele~~i~~L~ke~~~le~~~~el~~eLe~~~~el~~l~~~leEl~~~~~~L~~~l~~le 955 (1733)
+.......+..+++....+.......+-.+...+..+..+++.+.+.-..+..++..+..++.+..+.+..+......+.
T Consensus 1446 e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le 1525 (1930)
T KOG0161|consen 1446 EWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLE 1525 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333334444444444444445555566666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 956 NNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLT-EAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVL 1034 (1733)
Q Consensus 956 ~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~kle-e~~~~ieeLee~l~kle~~l~~l~ee~~ee~~~~~~~lE~ 1034 (1733)
.++..++..++++..+........-.+.-.+..++..+. .+...-++.+...+.+...+..+... ++.-.......-.
T Consensus 1526 ~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~-Le~E~r~k~e~~r 1604 (1930)
T KOG0161|consen 1526 QEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAE-LEAETRSKSEALR 1604 (1930)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHh
Confidence 666666666666655443332222223334444455544 23444455555566666666655554 3322222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000277 1035 ELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIK 1114 (1733)
Q Consensus 1035 el~~lq~Ele~l~~~l~~~~~~i~~Le~el~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~~El~~~~~el~~~~~el~ 1114 (1733)
.++++.+++.++...++.++.....+.+.+..+...+.. +...+.....-...+...+..+...+.
T Consensus 1605 ~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~--------------lq~~~e~~~~~~~e~~~q~~~aerr~~ 1670 (1930)
T KOG0161|consen 1605 SKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKE--------------LQRELEDAQRAREELLEQLAEAERRLA 1670 (1930)
T ss_pred hhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555554444444444433333333322 222222222222222223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHhhHHhHHHHHHHHHHHHHHHHhc--------h
Q 000277 1115 SMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRD---ELAGTIGSLESRSVELIGHLNDLQMHMKD--------E 1183 (1733)
Q Consensus 1115 ~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~kl~~---Ele~~~~~le~~~~el~~~leele~~lk~--------~ 1183 (1733)
.+..++.++...+..+.+.++.+..++.++...+..+.. .+...+..++.....+++-+++....++. .
T Consensus 1671 ~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~ 1750 (1930)
T KOG0161|consen 1671 ALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQ 1750 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444444444444444555555554444444444443221 11222222222222222222222221110 0
Q ss_pred hHHHHHHHH-------HHHHHHHHhhHHHHHHHHHhchhccccccccccccccccccccccccccccccccccchhhhhH
Q 000277 1184 RLLSAVKSC-------FERKIEGLQNMELIVEDIRIGVVGKGSAVTEGNSDVTKSFMDDIDNIEMYDNEVTVLDADDITS 1256 (1733)
Q Consensus 1184 ~~l~~ik~e-------~er~l~~lr~~~~~iedL~~~l~a~~raIm~~a~~~kKkle~dlN~iEl~~~~~~~~~~D~i~k 1256 (1733)
....++..+ .-+-...++++.+.+.||+.-|+....+.+..+-...-+|+.-|-++|-+++...+-..+++ +
T Consensus 1751 ~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~-k 1829 (1930)
T KOG0161|consen 1751 ADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQRRKAEAI-K 1829 (1930)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHh-H
Confidence 011111112 22222345788888999999888744432221223344577778888999999989899995 8
Q ss_pred HHHHhHHHHHHhhhhhhhhHhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000277 1257 CFRKTAEGFQMRTKILTDTFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDA 1336 (1733)
Q Consensus 1257 ~~rk~~~~~~~r~~~l~~~l~e~~~~~d~~i~~~~~~~~~~e~e~~~~~e~~e~L~~ql~~le~~k~~LE~~i~~Le~el 1336 (1733)
.+|+. .+++++|+-++++.....+. +.+.++.+...+-.++.|+...+............++.++
T Consensus 1830 ~~rk~----er~vkEl~~q~eed~k~~~~-----------~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~el 1894 (1930)
T KOG0161|consen 1830 GLRKK----ERRVKELQFQVEEDKKNIER-----------LQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQREL 1894 (1930)
T ss_pred HHHHH----HHHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887 66668888888887663332 3334444444555555555555555555555555555444
Q ss_pred HHHHHHHHHHHH
Q 000277 1337 TVLLSACIDATR 1348 (1733)
Q Consensus 1337 ~e~~~~~~~~~~ 1348 (1733)
+++......+.+
T Consensus 1895 e~a~erad~~e~ 1906 (1930)
T KOG0161|consen 1895 EEAEERADTAES 1906 (1930)
T ss_pred HHHHHHHHHHHH
Confidence 444444333333
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.95 E-value=4.2e-20 Score=261.73 Aligned_cols=132 Identities=14% Similarity=0.118 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCchhh--------h
Q 000277 1296 TTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLLSACIDATRELQFEVKNNLLELNSVPE--------L 1367 (1733)
Q Consensus 1296 ~~e~e~~~~~e~~e~L~~ql~~le~~k~~LE~~i~~Le~el~e~~~~~~~~~~e~~~e~~~~ll~~~e~~e--------L 1367 (1733)
.+..+|..+..+++++..++.++...+..+...+..|...+...|..+|......|..+|..|+ +|.+.. +
T Consensus 976 ~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~~~l~-~~~~~l~~~~~~~~~ 1054 (1164)
T TIGR02169 976 LAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEIFAELS-GGTGELILENPDDPF 1054 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEecCCCCcc
Confidence 3557888899999999999999999999999999999999999999999999999999999988 655431 4
Q ss_pred hhhhhhccCCCCccccccccchhcccCcccHHHHHHHHHHHHHhhCChhhhhhhhhccchhhhHHHHhhhcchHHH
Q 000277 1368 ENLNRGFSQPESKVDGDDTTDHQKSLHGNRYHEAAENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDTTTA 1443 (1733)
Q Consensus 1368 esl~~~l~~~~~kle~~i~~l~~~~~~~~~~~~~a~~L~~el~~e~~~~~~le~~k~~le~~ikeLq~rLdEaE~~ 1443 (1733)
..+....+.||++....+.. +|||....++.++++++....| .|++.+||..+.||..-..
T Consensus 1055 ~~~~~~~~~~~~~~~~~~~~-----lSgge~~~~~la~~~~~~~~~~----------~~~~~lDE~~~~ld~~~~~ 1115 (1164)
T TIGR02169 1055 AGGLELSAKPKGKPVQRLEA-----MSGGEKSLTALSFIFAIQRYKP----------SPFYAFDEVDMFLDGVNVE 1115 (1164)
T ss_pred cCCeEEEEEcCCCCCCcchh-----cCcchHHHHHHHHHHHHHhcCC----------CCcEEecccccccCHHHHH
Confidence 45667777899987777755 6999999999999998877777 8999999999999987543
No 8
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.92 E-value=1.4e-12 Score=175.30 Aligned_cols=189 Identities=16% Similarity=0.212 Sum_probs=105.5
Q ss_pred hhhhhhhhccchhhhHHHHhhhcchHHHHHhhhhhhhhhhHHHHhHHhh--------HHHHHHHHHHHHHhHHHHHHHHH
Q 000277 1416 AKLFEMTSTVAASTIQDLQKKLQDTTTAYEKVKDERDLHQNKVSKLESD--------VDALEHSCKELRLKVEDLEAKEE 1487 (1733)
Q Consensus 1416 ~~~le~~k~~le~~ikeLq~rLdEaE~~~~~~~~e~~~~kk~i~~LE~r--------v~~Le~e~~~~~~~~k~~r~~e~ 1487 (1733)
...+..-.-.+.+-+.++++.++...+...+-..|++..|.+.+.|... .+.|.+++.+..+....- ++
T Consensus 1252 i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~k---e~ 1328 (1822)
T KOG4674|consen 1252 IEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEK---EN 1328 (1822)
T ss_pred HHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 3334444447888999999999999999999989999999999888776 444444454444444433 44
Q ss_pred HhhHhHHHHhhhhhhhhhHHHhhhhc-CCCHHHHHHHHHhhccccccccccCCCCCCCchHHHHHHHHHhhhcccchhhh
Q 000277 1488 KLKENEAKISLLYDRLSRKEQEAEGL-FLSPLQIRKLVDKISGIEIPYAESAGDEEPESSAIVKKLFSIINSATKLPHQI 1566 (1733)
Q Consensus 1488 ~lke~~~~~~~~~~~~~q~ee~~~~~-~~~~~~~~~l~dK~~~~~~~~~e~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 1566 (1733)
.+.++..++-.+.++...-.++.+.. .-+..+++++.++-+++.....+ .+.+ --++..+...+|++
T Consensus 1329 ~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e-----------~~~q-~~el~~~~~~~~~~ 1396 (1822)
T KOG4674|consen 1329 LIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSE-----------KNAQ-ELELSDKKKAHELM 1396 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH-HHHHHHHHHHHHHH
Confidence 55555444444322221122221111 12223344444333333322111 1122 34566667777776
Q ss_pred hhcccc-hHHHHhhhhhhhHHHHhhHHHhhh----hhcCchhhHhhhhhhHHHHhhHHH
Q 000277 1567 DLLEHG-KQELQSILSTQTAEIEHLKGEVET----HLRNKPDLEKMKIEFAEFTFGLEK 1620 (1733)
Q Consensus 1567 ~~l~~~-~~~l~~~~~~~~~e~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 1620 (1733)
.-+.-+ ...+--.++ ...||+.|++.++. +-.-.-+.+.+.+++.+++-.+++
T Consensus 1397 ~e~t~rk~e~~~~k~~-~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~ 1454 (1822)
T KOG4674|consen 1397 QEDTSRKLEKLKEKLE-LSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEEEK 1454 (1822)
T ss_pred HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence 633222 222221221 33677777777744 344455677888888888888888
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.88 E-value=9e-15 Score=208.01 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=50.3
Q ss_pred hhcccccc-----cCccccccchhhhh--hHHHHHHHHHHHHHHHHHHHhhhcCCCchh--hhhh-hhHHHHHHHHHHHH
Q 000277 259 MVVYQGEL-----MDSSISGKISHVEQ--STYMLIEKYNQMLYEIYQLGQCLSKPDPER--RVQE-QFETVFAAARDELL 328 (1733)
Q Consensus 259 nvVlQGdv-----m~~~~~~~i~~lE~--g~~~~~Ek~~e~~~Eie~L~~~l~e~~~~~--~~~e-e~a~~~~~l~~El~ 328 (1733)
++|+||+| |+|.. .+..+++ |++.|.+++......+..+...+.++...+ .... +.+.+|..+..++.
T Consensus 139 ~~~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~ 216 (1179)
T TIGR02168 139 SIIEQGKISEIIEAKPEE--RRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYK 216 (1179)
T ss_pred hheecccHHHHHcCCHHH--HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999 67762 2344444 889999999999999999988887776433 2223 66666666666654
Q ss_pred HHHHH
Q 000277 329 NLKRR 333 (1733)
Q Consensus 329 elk~~ 333 (1733)
.++..
T Consensus 217 ~l~~~ 221 (1179)
T TIGR02168 217 ELKAE 221 (1179)
T ss_pred HHHHH
Confidence 44443
No 10
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=7.8e-14 Score=173.85 Aligned_cols=617 Identities=18% Similarity=0.185 Sum_probs=315.2
Q ss_pred hcccccc-----cCccccccchhhhh--hHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHH------
Q 000277 260 VVYQGEL-----MDSSISGKISHVEQ--STYMLIEKYNQMLYEIYQLGQCLSKPDPERRVQEQFETVFAAARDE------ 326 (1733)
Q Consensus 260 vVlQGdv-----m~~~~~~~i~~lE~--g~~~~~Ek~~e~~~Eie~L~~~l~e~~~~~~~~ee~a~~~~~l~~E------ 326 (1733)
+||||-| |+|.+| +..+|. ||..|..+...+..-++.-+..+.++.-.+ +++..=+|..++.+
T Consensus 144 LIMQGrITkVLNMKp~EI--LsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL--~eeI~P~l~KLR~Ers~~lE 219 (1174)
T KOG0933|consen 144 LIMQGRITKVLNMKPSEI--LSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLL--REEILPRLEKLREERSQYLE 219 (1174)
T ss_pred EEecccchhhhcCCcHHH--HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHH
Confidence 5999999 898843 344455 999999999888887777776666655321 22233333334333
Q ss_pred -------HHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHH-h
Q 000277 327 -------LLNLKRREEESVENLSHLEN--ENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVT-K 396 (1733)
Q Consensus 327 -------l~elk~~~~~~~e~l~~L~~--E~~~L~~el~~~~~~i~~~~~el~~~~~eL~ele~~l~~l~eki~~~~~-k 396 (1733)
+..+.+ +-.+..|+.. -...+..++...+..+..+...+.....++..+++++..+......... .
T Consensus 220 ~q~~~~dle~l~R----~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~ 295 (1174)
T KOG0933|consen 220 YQKINRDLERLSR----ICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGE 295 (1174)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 222222 2234444433 3556677777778888888888888888888888777776664332111 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH---HHHHHHHHHHHHHhHHHHHH
Q 000277 397 GKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAE--------LSKEEFIKT---ENLVASLQETLQQSNLMLEK 465 (1733)
Q Consensus 397 ~~~l~~~~~~Lk~elee~~~ele~~~~ele~~~~~le~~e--------~l~~el~~~---k~~~~~L~~~~~ek~~~l~~ 465 (1733)
.+.|..+...+...+......+.-....|......++.+. .+......+ ...-+.++....+....+..
T Consensus 296 ~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~ 375 (1174)
T KOG0933|consen 296 VKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEK 375 (1174)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 2345555555555555444444444444444333333332 122111111 11223344444444444444
Q ss_pred HHHHhccCC-------ChhhhhhhHHHHHHHHHHHHHHHHhhhHhhHhhhHHHhhccCCCCCCchhhHHHHHHHHHHHHH
Q 000277 466 SEEVLAQID-------IPEELQSLDMVERIKWLVSERHELKGISLDFYKLKDAVSLIDVPETGSFSDLESRLAWLKESFY 538 (1733)
Q Consensus 466 ~e~~l~~~~-------~~~~~~~~el~~k~~~L~e~r~el~~~~~e~~~l~e~l~~~~~~~~~~~~ele~ei~~L~~~~~ 538 (1733)
.+..++.+. -.+......+..-...+.+...++....-.+..+..++...+. ........-......+.
T Consensus 376 ~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~----e~~t~~~~~~~~~~~ld 451 (1174)
T KOG0933|consen 376 AEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREG----ELATASAEYVKDIEELD 451 (1174)
T ss_pred HHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HhhhhhHHHHHHHHHHH
Confidence 444333332 1122223333333344444444455444455555555443322 22233333333344444
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 000277 539 QAKDEANVLLDQLNRM------KEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIVEKANKISLEKDHMVRVLL 612 (1733)
Q Consensus 539 ~~~~e~~~l~~El~~~------~~~l~~~~~~l~~~l~~~~~E~e~L~~eL~~l~~e~~e~~~~~~~~~~~~~~l~~~l~ 612 (1733)
..+.+++.++..+..+ ...+......+......+..+.+.|-..+..+...|..=. -++..+.+.|.|+
T Consensus 452 ~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~-----~nfdrs~V~G~Va 526 (1174)
T KOG0933|consen 452 ALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPE-----PNFDRSKVKGLVA 526 (1174)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC-----ccchHHHHHHHHH
Confidence 4445555555544443 4445555555555555555555555544444433332111 1122345668889
Q ss_pred HhhCCCccchhhhhcc---------cCCchHHHHHHHH--HHHhhcc--cccC--CCccchHHHHHHH----hH------
Q 000277 613 KESGTSMEDQDVASQT---------SSDPTAIISKCIG--KIREQTC--ASSD--TSGADSEMLQTMQ----SL------ 667 (1733)
Q Consensus 613 el~~~~i~~y~~A~~~---------avd~~~~a~~~i~--~LK~~~~--~l~k--~~~~~~e~~~~l~----d~------ 667 (1733)
.|..++=..|.+|.++ +|||..++-..++ .|+++.| ||++ ..+..|...+.+. +.
T Consensus 527 ~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgkqLLq~g~l~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~~v~~al~ 606 (1174)
T KOG0933|consen 527 KLIKVKDRSYATALETTAGGRLYNVVVDTEDTGKQLLQRGNLRRRVTIIPLNKIQSFVLSPNVLQAAKNVGNDNVELALS 606 (1174)
T ss_pred HHheeCcchHHHHHHHHhcCcceeEEeechHHHHHHhhcccccceeEEEechhhhhccCCHhHHHHHHHhcCchHHHHHH
Confidence 9998752358888444 4999999999988 8888876 9988 3444444433321 11
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHH---HHHHHHHHH
Q 000277 668 LYVSYQELILCQQILEEDALVRLQLNDLS-------------------------------NKLRVASE---EFGALKEEK 713 (1733)
Q Consensus 668 l~~l~~E~~~l~~~le~~~~l~~~~~~l~-------------------------------~~l~~L~~---el~~l~~el 713 (1733)
|.--++++.++..+++.++.++...+.+. .....+-. .+..+..++
T Consensus 607 Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~ 686 (1174)
T KOG0933|consen 607 LIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKEL 686 (1174)
T ss_pred HhcCCHHHHHHHHHHhCceEEecCHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHH
Confidence 12335566666666665544433333331 00011111 222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000277 714 ESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSNDLDCI 793 (1733)
Q Consensus 714 ~~l~~el~~~e~k~~~lre~l~~~~~k~k~l~~el~~l~~~ieel~~eie~lk~ei~~~e~el~~le~el~~L~~~le~l 793 (1733)
...+.+++.++..+..+. ........+..+++-..+++.-+...+. .......++.+
T Consensus 687 ~~~q~el~~le~eL~~le------------------~~~~kf~~l~~ql~l~~~~l~l~~~r~~-----~~e~~~~~~~~ 743 (1174)
T KOG0933|consen 687 RAIQKELEALERELKSLE------------------AQSQKFRDLKQQLELKLHELALLEKRLE-----QNEFHKLLDDL 743 (1174)
T ss_pred HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cChHhhHHHHH
Confidence 333333333333333321 1111122222222222222221111111 11122233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 794 RKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRIILPVNSVFKEPLEKVNWIASYINECHDTKTQLEQELGNVKQE 873 (1733)
Q Consensus 794 ~~le~ei~~lk~e~eele~~l~e~e~~l~~l~~~i~el~~~~~~~~~~~~~ki~~l~~~i~~Le~~l~ele~ei~~l~~~ 873 (1733)
..+..++.++..++.+....+......+..+...+.+.... ...++.++.+.+..+...+.............
T Consensus 744 ~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~-------re~rlkdl~keik~~k~~~e~~~~~~ek~~~e 816 (1174)
T KOG0933|consen 744 KELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKAN-------RERRLKDLEKEIKTAKQRAEESSKELEKRENE 816 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-------hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666667777777777777666665532 23466667777777777776666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000277 874 ASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEEL 923 (1733)
Q Consensus 874 l~ele~el~~l~~e~e~le~eLeele~~i~~L~ke~~~le~~~~el~~eL 923 (1733)
.+.+..+...+..++..+..++..+...++.+..++..+...+.......
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~ 866 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDV 866 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 66666666666666666666666666666666665555544444444433
No 11
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.85 E-value=3.2e-10 Score=152.97 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 709 LKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQI 783 (1733)
Q Consensus 709 l~~el~~l~~el~~~e~k~~~lre~l~~~~~k~k~l~~el~~l~~~ieel~~eie~lk~ei~~~e~el~~le~el 783 (1733)
+..+++.++.++..+......+...+.-+..+.+.+...+..++.++..+...-..+...|...+..+..+..+|
T Consensus 659 l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL 733 (1822)
T KOG4674|consen 659 LQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQEL 733 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555666666666666666655555555555555444444443
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.82 E-value=2.3e-11 Score=173.29 Aligned_cols=134 Identities=19% Similarity=0.165 Sum_probs=98.2
Q ss_pred HHHHHHHHH----hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHhhc----CCCchh
Q 000277 1297 TRDEVVRMT----QCMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLL---SACIDATRELQFEVKNNLL----ELNSVP 1365 (1733)
Q Consensus 1297 ~e~e~~~~~----e~~e~L~~ql~~le~~k~~LE~~i~~Le~el~e~~---~~~~~~~~e~~~e~~~~ll----~~~e~~ 1365 (1733)
+-++|..+. ++++++..|+.++...+..|+..|..+...+...| ...|......|..+|..|| .+|.+.
T Consensus 980 aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~~~~~~~~ 1059 (1179)
T TIGR02168 980 KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLFGGGEAE 1059 (1179)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 334454444 88999999999999999999999999999999998 7777777766655555555 344433
Q ss_pred h--------hhhhhhhccCCCCccccccccchhcccCcccHHHHHHHHHHHHHhhCChhhhhhhhhccchhhhHHHHhhh
Q 000277 1366 E--------LENLNRGFSQPESKVDGDDTTDHQKSLHGNRYHEAAENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKL 1437 (1733)
Q Consensus 1366 e--------Lesl~~~l~~~~~kle~~i~~l~~~~~~~~~~~~~a~~L~~el~~e~~~~~~le~~k~~le~~ikeLq~rL 1437 (1733)
. +..|......||++....+.. +++|...+++.++++.+....| .++..+||..+.|
T Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----lS~g~~~~~~l~~~~~~~~~~~----------~~~~~lDE~~~~l 1124 (1179)
T TIGR02168 1060 LRLTDPEDLLEAGIEIFAQPPGKKNQNLSL-----LSGGEKALTALALLFAIFKVKP----------APFCILDEVDAPL 1124 (1179)
T ss_pred EEeCCCCcccccCceEEEeCCCCccccccc-----cCccHHHHHHHHHHHHHHccCC----------CCeEEecCccccc
Confidence 1 345556667788877666644 6899988888777776555555 7889999999999
Q ss_pred cchHHHHH
Q 000277 1438 QDTTTAYE 1445 (1733)
Q Consensus 1438 dEaE~~~~ 1445 (1733)
|.......
T Consensus 1125 d~~~~~~~ 1132 (1179)
T TIGR02168 1125 DDANVERF 1132 (1179)
T ss_pred cHHHHHHH
Confidence 87655443
No 13
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=1.5e-11 Score=153.05 Aligned_cols=45 Identities=9% Similarity=0.081 Sum_probs=34.8
Q ss_pred HHHHHHHhhCCCccchhhh---------hcccCCchHHHHHHHHHHHhh--c--c--cccC
Q 000277 607 MVRVLLKESGTSMEDQDVA---------SQTSSDPTAIISKCIGKIREQ--T--C--ASSD 652 (1733)
Q Consensus 607 l~~~l~el~~~~i~~y~~A---------~~~avd~~~~a~~~i~~LK~~--~--~--~l~k 652 (1733)
+.|+|.+|..|+ ..|-+| -++|||++++|...+..+..- | | ||++
T Consensus 524 v~G~v~eL~~v~-~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNr 583 (1200)
T KOG0964|consen 524 VFGTVYELIKVP-NKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNR 583 (1200)
T ss_pred cceehhhhhcCC-HHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeeccc
Confidence 348888888886 567666 556699999999998888884 2 3 8887
No 14
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.78 E-value=1.3e-09 Score=143.35 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 000277 1086 TTLENELQMLKDEAGSQAVKLADAHTTIKS---------MEDALLKAKNDISVLEGEKRIS-----DQEVSALNSKLNAC 1151 (1733)
Q Consensus 1086 ~elk~el~~l~~El~~~~~el~~~~~el~~---------L~~~Lee~~~~le~Le~e~k~l-----~~Ei~~L~~~l~kl 1151 (1733)
......+..+...+......++...+.-.. +..++.++...+..+..++.+. ..+...|....+.+
T Consensus 974 ~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l 1053 (1294)
T KOG0962|consen 974 SESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKL 1053 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444433333 3344444444444444444333 35555566666677
Q ss_pred HHHHhhhHhhHHhHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHHHHhhHHHHHHHHHhchhccccccccccccccc
Q 000277 1152 RDELAGTIGSLESRSVELIGHLNDLQ-MHMKDERLLSAVKSCFERKIEGLQNMELIVEDIRIGVVGKGSAVTEGNSDVTK 1230 (1733)
Q Consensus 1152 ~~Ele~~~~~le~~~~el~~~leele-~~lk~~~~l~~ik~e~er~l~~lr~~~~~iedL~~~l~a~~raIm~~a~~~kK 1230 (1733)
.++..+..|.+.+....+..+-.+|. ..+++ +...|.+.|..+++...++.||..|..|++.|||. +|+.|
T Consensus 1054 ~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd------~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Aim~--fHs~K 1125 (1294)
T KOG0962|consen 1054 SSEKNLLLGEMKQYESQIKKLKQELREKDFKD------AEKNYRKALIELKTTELSNKDLDKYYKALDKAIMQ--FHSMK 1125 (1294)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHhhhhhhcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 77777777877777777777666665 44555 44789999999999999999999999999999999 99999
Q ss_pred ccccccccc--ccccccccccchhhh
Q 000277 1231 SFMDDIDNI--EMYDNEVTVLDADDI 1254 (1733)
Q Consensus 1231 kle~dlN~i--El~~~~~~~~~~D~i 1254 (1733)
|++||+| ++|-.+|+|+|+|+|
T Consensus 1126 --MeeiN~iI~elW~~tYrG~Did~I 1149 (1294)
T KOG0962|consen 1126 --MEEINRIIRELWRKTYRGTDIDYI 1149 (1294)
T ss_pred --HHHHHHHHHHHHHhccCCCCcceE
Confidence 9999999 999999999999998
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=1.7e-08 Score=142.96 Aligned_cols=33 Identities=9% Similarity=-0.059 Sum_probs=22.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 000277 275 ISHVEQSTYMLIEKYNQMLYEIYQLGQCLSKPD 307 (1733)
Q Consensus 275 i~~lE~g~~~~~Ek~~e~~~Eie~L~~~l~e~~ 307 (1733)
.+.|+.....|...+..+..++..+...+....
T Consensus 300 ~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~ 332 (1311)
T TIGR00606 300 DEQLNDLYHNHQRTVREKERELVDCQRELEKLN 332 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777766665554
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.76 E-value=6.8e-11 Score=168.24 Aligned_cols=117 Identities=14% Similarity=0.147 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--
Q 000277 528 SRLAWLKESFYQAKDEANVLLDQLNRM---KEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIVEKANKISL-- 602 (1733)
Q Consensus 528 ~ei~~L~~~~~~~~~e~~~l~~El~~~---~~~l~~~~~~l~~~l~~~~~E~e~L~~eL~~l~~e~~e~~~~~~~~~~-- 602 (1733)
..+..+...+..++..+..+..++..+ +..+...+..+...+..+..++..+...+..++.++..+.........
T Consensus 427 ~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~~ 506 (1164)
T TIGR02169 427 AAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERV 506 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333333333334444443333333333 333445555555556666666666666666665555444443221110
Q ss_pred ------------hhhHHHHHHHHhhCCCccchhhh---------hcccCCchHHHHHHHHHHHh
Q 000277 603 ------------EKDHMVRVLLKESGTSMEDQDVA---------SQTSSDPTAIISKCIGKIRE 645 (1733)
Q Consensus 603 ------------~~~~l~~~l~el~~~~i~~y~~A---------~~~avd~~~~a~~~i~~LK~ 645 (1733)
....+.|.|.+++.++ ++|.+| .+++|+++.+|..||.+|+.
T Consensus 507 ~~~~~i~~~~~~~~~g~~g~l~dli~v~-~~y~~Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~ 569 (1164)
T TIGR02169 507 RGGRAVEEVLKASIQGVHGTVAQLGSVG-ERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKR 569 (1164)
T ss_pred cchHHHHHHHhcCCCCceecHHHhcCcC-HHHHHHHHHHhhhhhCCEEECCHHHHHHHHHHHHh
Confidence 0122346688888887 789888 55669999999999999984
No 17
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=5.7e-12 Score=159.40 Aligned_cols=504 Identities=16% Similarity=0.214 Sum_probs=245.1
Q ss_pred hcccccc-----cCccccccchhhhh--hHHHHHHHHHHHHHHHHHHHhhhcCCCchh-------h-hh-h-hhHHHHHH
Q 000277 260 VVYQGEL-----MDSSISGKISHVEQ--STYMLIEKYNQMLYEIYQLGQCLSKPDPER-------R-VQ-E-QFETVFAA 322 (1733)
Q Consensus 260 vVlQGdv-----m~~~~~~~i~~lE~--g~~~~~Ek~~e~~~Eie~L~~~l~e~~~~~-------~-~~-e-e~a~~~~~ 322 (1733)
.|.||+| ++|.+.+.+ +|. |.-+|...|..+..+...+.......-... . .. . +.+.+|+.
T Consensus 128 LVFQGdVE~IA~k~PkElt~L--FEEISgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~ 205 (1141)
T KOG0018|consen 128 LVFQGDVEKIAGKNPKELTAL--FEEISGSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQR 205 (1141)
T ss_pred EEecChHHHHhccCHHHHHHH--HHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 3999999 467744332 233 888888999999988888887766554322 0 11 2 55677777
Q ss_pred HHHHHHHHHHH------------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q 000277 323 ARDELLNLKRR------------EEESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKL 390 (1733)
Q Consensus 323 l~~El~elk~~------------~~~~~e~l~~L~~E~~~L~~el~~~~~~i~~~~~el~~~~~eL~ele~~l~~l~eki 390 (1733)
+++++...... +..+.+.++.+..++..+..........+.....+.....+++......+....+++
T Consensus 206 lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l 285 (1141)
T KOG0018|consen 206 LKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKL 285 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77775333332 123333333333333333333333333333333333333333333333333333332
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-H
Q 000277 391 SLAVTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAELSKEEFIKTENLVASLQETLQQSNLMLEKSEE-V 469 (1733)
Q Consensus 391 ~~~~~k~~~l~~~~~~Lk~elee~~~ele~~~~ele~~~~~le~~e~l~~el~~~k~~~~~L~~~~~ek~~~l~~~e~-~ 469 (1733)
.. ...+..++.........+......+...+.... ...+.+...++...++......-....+.... +
T Consensus 286 ~e--------rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~---~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~r 354 (1141)
T KOG0018|consen 286 AE--------RPELIKVKENASHLKKRLEEIEKDIETAKKDYR---ALKETIERLEKELKAVEGAKEEFEKEIEERSQER 354 (1141)
T ss_pred hh--------hhHHhhcchhhccchhHHHHhhhhHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 21 111122222222222222222222222222111 12333333334444444333333333322221 2
Q ss_pred hccCCChhhhhhhHHHH-HHHHHHHHHHHHhhhHhhHhhhHHHhhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 470 LAQIDIPEELQSLDMVE-RIKWLVSERHELKGISLDFYKLKDAVSLIDVPETGSFSDLESRLAWLKESFYQAKDEANVLL 548 (1733)
Q Consensus 470 l~~~~~~~~~~~~el~~-k~~~L~e~r~el~~~~~e~~~l~e~l~~~~~~~~~~~~ele~ei~~L~~~~~~~~~e~~~l~ 548 (1733)
.+.+.+..... .+..- +.....+.+.++..+-.....-++.+..... ...+++.++.|+..++..+...+..|.
T Consensus 355 g~~lnl~d~~~-~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~----~~~elE~r~k~l~~sver~~~~~~~L~ 429 (1141)
T KOG0018|consen 355 GSELNLKDDQV-EEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELE----RRAELEARIKQLKESVERLDKRRNKLA 429 (1141)
T ss_pred cccCCcchHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333221110 01100 1111111122333222222222222221100 255678888999888877777776666
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hhhhhhHHHHHHH
Q 000277 549 DQLNRM---KEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIVEKANK-------------ISLEKDHMVRVLL 612 (1733)
Q Consensus 549 ~El~~~---~~~l~~~~~~l~~~l~~~~~E~e~L~~eL~~l~~e~~e~~~~~~~-------------~~~~~~~l~~~l~ 612 (1733)
.-+... ...+....+.+.........+-..+..+|......+..+...... +..-+..++|-|.
T Consensus 430 ~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr~fPgv~Grvi 509 (1141)
T KOG0018|consen 430 AKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAVEALKRLFPGVYGRVI 509 (1141)
T ss_pred HHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhCCCccchhh
Confidence 555444 445555556666666666666666666666666665444443222 2222344446667
Q ss_pred HhhCCCccchhhh---------hcccCCchHHHHHHHHHHHhhc----c--cccC------------C-------Cccch
Q 000277 613 KESGTSMEDQDVA---------SQTSSDPTAIISKCIGKIREQT----C--ASSD------------T-------SGADS 658 (1733)
Q Consensus 613 el~~~~i~~y~~A---------~~~avd~~~~a~~~i~~LK~~~----~--~l~k------------~-------~~~~~ 658 (1733)
+||...=..|.+| +.|+|||..+|..||.|||.+- | |++. + .+..|
T Consensus 510 DLc~pt~kkyeiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~TFlPld~i~v~~~~e~lr~~~g~rlv~Dvi~y 589 (1141)
T KOG0018|consen 510 DLCQPTQKKYEIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQRLEPMTFLPLDSIRVKPVNEKLRELGGVRLVIDVINY 589 (1141)
T ss_pred hcccccHHHHHHHHHHHHhcccceEEeccHHHHHHHHHHHHHhccCCccccchhhhhcCcccccccCcCCeEEEEEecCC
Confidence 7775432358888 7777999999999999999972 2 4442 0 11111
Q ss_pred HH-HHHH-----HhHH---------------------HhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Q 000277 659 EM-LQTM-----QSLL---------------------YVSYQELILCQQILEEDAL----------VRLQLNDLSNKLRV 701 (1733)
Q Consensus 659 e~-~~~l-----~d~l---------------------~~l~~E~~~l~~~le~~~~----------l~~~~~~l~~~l~~ 701 (1733)
+. ++.+ +++| +++||= ++-++|. .+..++.|.....+
T Consensus 590 e~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~~r~k~valdGt------l~~ksGlmsGG~s~~~wdek~~~~L~~~k~r 663 (1141)
T KOG0018|consen 590 EPEYEKAVQFACGNALVCDSVEDARDLAYGGEIRFKVVALDGT------LIHKSGLMSGGSSGAKWDEKEVDQLKEKKER 663 (1141)
T ss_pred CHHHHHHHHHHhccceecCCHHHHHHhhhcccccceEEEeeee------EEeccceecCCccCCCcCHHHHHHHHHHHHH
Confidence 11 2221 3333 222222 1112221 34555666555666
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 702 ASEEFGALKE---EKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTISE 778 (1733)
Q Consensus 702 L~~el~~l~~---el~~l~~el~~~e~k~~~lre~l~~~~~k~k~l~~el~~l~~~ieel~~eie~lk~ei~~~e~el~~ 778 (1733)
+..++..+.. +....+..+..++.++..++..+............++..+...+.+...+|..++..++..+....+
T Consensus 664 l~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~ 743 (1141)
T KOG0018|consen 664 LLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKE 743 (1141)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Confidence 6666666555 2334455555566666666655555544444444556666666666666666666666666666666
Q ss_pred HHHHHHHHH
Q 000277 779 CRDQINRLS 787 (1733)
Q Consensus 779 le~el~~L~ 787 (1733)
++.++..+.
T Consensus 744 L~~~~n~ve 752 (1141)
T KOG0018|consen 744 LEERMNKVE 752 (1141)
T ss_pred HHHHHHHHH
Confidence 666665553
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.75 E-value=1e-09 Score=153.30 Aligned_cols=120 Identities=18% Similarity=0.229 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q 000277 525 DLESRLAWLKESFYQAKDEANVLLDQLNRM---KEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIVEKANK-- 599 (1733)
Q Consensus 525 ele~ei~~L~~~~~~~~~e~~~l~~El~~~---~~~l~~~~~~l~~~l~~~~~E~e~L~~eL~~l~~e~~e~~~~~~~-- 599 (1733)
.+..++..+...+...+.++..+..++..+ ++.+...+..+...+..+...+..+...+..++..+..+......
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 501 (1163)
T COG1196 422 DLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ 501 (1163)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344444445555555555555555554444 444555556666666666666666666666666555444443221
Q ss_pred --------hhhhhhHHHHHHHHhhCCCccchhhh---------hcccCCchHHHHHHHHHHHh
Q 000277 600 --------ISLEKDHMVRVLLKESGTSMEDQDVA---------SQTSSDPTAIISKCIGKIRE 645 (1733)
Q Consensus 600 --------~~~~~~~l~~~l~el~~~~i~~y~~A---------~~~avd~~~~a~~~i~~LK~ 645 (1733)
.....+.+.|.|.+++.++ .+|.+| .+++|+++.+|..|+.+||.
T Consensus 502 ~~~~~~~~~~~~~~Gv~G~v~~li~v~-~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~ 563 (1163)
T COG1196 502 GVRAVLEALESGLPGVYGPVAELIKVK-EKYETALEAALGNRLQAVVVENEEVAKKAIEFLKE 563 (1163)
T ss_pred hHHHHHHHHhccCCCccchHHHhcCcC-hHHHHHHHHHcccccCCeeeCChHHHHHHHHHHhh
Confidence 1111344668999999987 589988 45559999999999999998
No 19
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.3e-11 Score=153.49 Aligned_cols=358 Identities=16% Similarity=0.228 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 975 AVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAY 1054 (1733)
Q Consensus 975 le~eL~kl~~el~~l~~klee~~~~ieeLee~l~kle~~l~~l~ee~~ee~~~~~~~lE~el~~lq~Ele~l~~~l~~~~ 1054 (1733)
+...+.....++..+..++..+...-..+...+..++++...+... ++.. .++.....+-.|+.
T Consensus 333 ~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~K-----qgr~-----------sqFssk~eRDkwir 396 (1200)
T KOG0964|consen 333 VKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAK-----QGRY-----------SQFSSKEERDKWIR 396 (1200)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-----hccc-----------cccCcHHHHHHHHH
Confidence 3334444444444455555554444444445555555554443332 1111 22444445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1055 TTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEK 1134 (1733)
Q Consensus 1055 ~~i~~Le~el~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~Le~e~ 1134 (1733)
+.+..+..-+.......+.++.++..+...+.....++.++...++.....+..+..+...++..++++......+=++-
T Consensus 397 ~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE 476 (1200)
T KOG0964|consen 397 SEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREE 476 (1200)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665555556666666666666666666666666665666666666666666666666666666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------------------hhhHhhHHh---------HHHHHHHHHHHHHHHHh
Q 000277 1135 RISDQEVSALNSKLNACRDEL------------------------AGTIGSLES---------RSVELIGHLNDLQMHMK 1181 (1733)
Q Consensus 1135 k~l~~Ei~~L~~~l~kl~~El------------------------e~~~~~le~---------~~~el~~~leele~~lk 1181 (1733)
+.++..+..+..-+......+ .|.+|.+-. .+.++.++..-|..++.
T Consensus 477 ~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVd 556 (1200)
T KOG0964|consen 477 KKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVD 556 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceEEEEec
Confidence 555544444444443322221 122222111 01111111111111110
Q ss_pred --------------------------------------------------chhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000277 1182 --------------------------------------------------DERLLSAVKSCFERKIEGLQNMELIVEDIR 1211 (1733)
Q Consensus 1182 --------------------------------------------------~~~~l~~ik~e~er~l~~lr~~~~~iedL~ 1211 (1733)
+|.+-.+++..|++. .+|.||.
T Consensus 557 ndevATkIl~~~n~m~~GrVTF~PLNrl~~r~v~yp~~sdaiPli~kl~y~p~fdka~k~Vfgkt--------ivcrdl~ 628 (1200)
T KOG0964|consen 557 NDEVATKILRKLNKMKGGRVTFMPLNRLKARDVEYPKDSDAIPLISKLRYEPQFDKALKHVFGKT--------IVCRDLE 628 (1200)
T ss_pred ccHHHHHHHHHHHhccCCeeEEeecccCchhhccCCCCCCccchHHHhCcchhhHHHHHHHhCce--------EEeccHH
Confidence 122223333333333 5566666
Q ss_pred hchhccccccccccccccccccccccccccccccc------cccchhhh------hHHHHHhHHHHHHhhhhhhhhHhHh
Q 000277 1212 IGVVGKGSAVTEGNSDVTKSFMDDIDNIEMYDNEV------TVLDADDI------TSCFRKTAEGFQMRTKILTDTFEHF 1279 (1733)
Q Consensus 1212 ~~l~a~~raIm~~a~~~kKkle~dlN~iEl~~~~~------~~~~~D~i------~k~~rk~~~~~~~r~~~l~~~l~e~ 1279 (1733)
. |.++.|+ ++||.|++.++.+ +||+.|.. .+++++. +.++.+|+..+.+.
T Consensus 629 q------------a~~~ak~--~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~~~~----~~~~~~l~~~L~~~ 690 (1200)
T KOG0964|consen 629 Q------------ALRLAKK--HELNCITLSGDQVSKKGVLTGGYEDQKRSRLELLKNVNES----RSELKELQESLDEV 690 (1200)
T ss_pred H------------HHHHHHh--cCCCeEEeccceecccCCccccchhhhhhHHHHHhhhHHH----HHHHHHHHHHHHHH
Confidence 5 5566664 7899999999986 88887653 3555555 44558888888888
Q ss_pred hhhh---hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 000277 1280 SVSI---DEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEA-------MVMLQNDATVLLSACIDATRE 1349 (1733)
Q Consensus 1280 ~~~~---d~~i~~~~~~~~~~e~e~~~~~e~~e~L~~ql~~le~~k~~LE~~-------i~~Le~el~e~~~~~~~~~~e 1349 (1733)
+..+ |+.|+++++.+|+++..+......+..++..+..+..++-.++.. +..+...+..+.+.......+
T Consensus 691 r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~e 770 (1200)
T KOG0964|consen 691 RNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESE 770 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 7764 556999999999999999999999999999999888888877774 444555555566677778889
Q ss_pred HhHHHHHhhcCCCchhhhhhhhhhcc
Q 000277 1350 LQFEVKNNLLELNSVPELENLNRGFS 1375 (1733)
Q Consensus 1350 ~~~e~~~~ll~~~e~~eLesl~~~l~ 1375 (1733)
+.++|+.. +++.+...|.+++..|.
T Consensus 771 l~sel~sq-Lt~ee~e~l~kLn~eI~ 795 (1200)
T KOG0964|consen 771 LGSELFSQ-LTPEELERLSKLNKEIN 795 (1200)
T ss_pred HhHHHHhh-cCHHHHHHHHHhhHHHH
Confidence 99988887 77778778888887764
No 20
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.5e-08 Score=127.94 Aligned_cols=90 Identities=22% Similarity=0.250 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 701 VASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTISECR 780 (1733)
Q Consensus 701 ~L~~el~~l~~el~~l~~el~~~e~k~~~lre~l~~~~~k~k~l~~el~~l~~~ieel~~eie~lk~ei~~~e~el~~le 780 (1733)
.+......++.....+..++..++.+....++.++....+.+.+.++++.....+.++..-.+.....++.++.++..+.
T Consensus 374 ~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~ 453 (1293)
T KOG0996|consen 374 EIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLE 453 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHH
Confidence 45555555666777788888888888888888888877777777777777777777777666666666666666666666
Q ss_pred HHHHHHHhhH
Q 000277 781 DQINRLSNDL 790 (1733)
Q Consensus 781 ~el~~L~~~l 790 (1733)
..+......+
T Consensus 454 ~~~~~~~~~l 463 (1293)
T KOG0996|consen 454 ELLEKEEREL 463 (1293)
T ss_pred HHHHHHHHHH
Confidence 5554443333
No 21
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.65 E-value=1.7e-08 Score=130.80 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000277 527 ESRLAWLKESFYQAKDEANVLLDQLNRM---KEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIVEKANK 599 (1733)
Q Consensus 527 e~ei~~L~~~~~~~~~e~~~l~~El~~~---~~~l~~~~~~l~~~l~~~~~E~e~L~~eL~~l~~e~~e~~~~~~~ 599 (1733)
...+..|...+ .++.++..+..++... ...+.. ++...+...++..+.+.+..++..++..+.+++..+..
T Consensus 73 ~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~ 146 (775)
T PF10174_consen 73 QEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIET 146 (775)
T ss_pred HHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555 5555555555554333 122222 44444444555555555555555555544444444443
No 22
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.64 E-value=3.5e-17 Score=217.84 Aligned_cols=670 Identities=16% Similarity=0.187 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000277 845 KVNWIASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELE 924 (1733)
Q Consensus 845 ki~~l~~~i~~Le~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele~~i~~L~ke~~~le~~~~el~~eLe 924 (1733)
.+..+...+..++.....++.....+...+.++...+..+.............++..+..+...+......+.++.....
T Consensus 132 ~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~ 211 (859)
T PF01576_consen 132 AVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKA 211 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666655555555566666666666666655555555555556666666666666555555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 925 KAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLE 1004 (1733)
Q Consensus 925 ~~~~el~~l~~~leEl~~~~~~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~klee~~~~ieeLe 1004 (1733)
.+..++..+...+++.......+......+..++..+...+++....+..+...+..+..++..++..+++.......+.
T Consensus 212 kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~ 291 (859)
T PF01576_consen 212 KLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELE 291 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 66666677777777777777777777777778888888888888888888888888888888888777776655666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1005 DSLAQVEANVAMLTEQNKEE-AQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQV 1083 (1733)
Q Consensus 1005 e~l~kle~~l~~l~ee~~ee-~~~~~~~lE~el~~lq~Ele~l~~~l~~~~~~i~~Le~el~~~~~~l~~l~~e~~~~e~ 1083 (1733)
..+..+...+..+... ++. .......++..+.++...+.++...+......+..++.....+...+..+...+.....
T Consensus 292 ~qlsk~~~El~~~k~K-~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~ 370 (859)
T PF01576_consen 292 RQLSKLNAELEQWKKK-YEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQA 370 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665555544 222 22223345555555555555555555555555544444444444444333333333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Q 000277 1084 GKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGTIGSLE 1163 (1733)
Q Consensus 1084 ~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~kl~~Ele~~~~~le 1163 (1733)
....+..+ .+.+...+...+..+..+...+..+.++...+..++..+...+..+...+....+...
T Consensus 371 ~~~~LeKK--------------qr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k 436 (859)
T PF01576_consen 371 AAAELEKK--------------QRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENK 436 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33333332 3333333333333333333444444444444444444444444433333222222222
Q ss_pred hHHHHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHHHHhhHHHHHHHHHhchhcccccccccccccccccccccccc
Q 000277 1164 SRSVELIGHLNDLQMHMK----DERLLSAVKSCFERKIEGLQNMELIVEDIRIGVVGKGSAVTEGNSDVTKSFMDDIDNI 1239 (1733)
Q Consensus 1164 ~~~~el~~~leele~~lk----~~~~l~~ik~e~er~l~~lr~~~~~iedL~~~l~a~~raIm~~a~~~kKkle~dlN~i 1239 (1733)
....+ +.++...+. +...+...+..++... ..+..+++.+...+.+.- ..+..|...|+.+
T Consensus 437 ~L~~E----l~dl~~q~~~~~k~v~eLek~kr~LE~e~---~El~~~leE~E~~l~~~E--------~~~lRl~~el~~~ 501 (859)
T PF01576_consen 437 QLQDE----LEDLTSQLDDAGKSVHELEKAKRRLEQEK---EELQEQLEEAEDALEAEE--------QKKLRLQVELQQL 501 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHh----hccchhhhhhhccchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 22222 222211111 1001111111111111 122233333333222211 1112233444444
Q ss_pred ccccccccccchhhhhHHHHHhHHHHHHhhhhhhhhHhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHH
Q 000277 1240 EMYDNEVTVLDADDITSCFRKTAEGFQMRTKILTDTFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLE 1319 (1733)
Q Consensus 1240 El~~~~~~~~~~D~i~k~~rk~~~~~~~r~~~l~~~l~e~~~~~d~~i~~~~~~~~~~e~e~~~~~e~~e~L~~ql~~le 1319 (1733)
.-....--....+.+ ...|+- ++.++..|+..|+.-.. .-+.+.+..+.++.++..+...++........+.
T Consensus 502 r~e~er~l~eKeeE~-E~~Rr~---~qr~l~~le~~LE~E~k----~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~ 573 (859)
T PF01576_consen 502 RQEIERELQEKEEEF-EETRRN---HQRQLESLEAELEEERK----ERAEALREKKKLESDLNELEIQLDHANRANEEAQ 573 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhhHH-HHHHHh---hHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 322222211222221 333332 23444666666655544 3334555666666666666666666655566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCC-CchhhhhhhhhhccCCCCccccccccchhcccCcccH
Q 000277 1320 GCKQEHEEAMVMLQNDATVLLSACIDATRELQFEVKNNLLEL-NSVPELENLNRGFSQPESKVDGDDTTDHQKSLHGNRY 1398 (1733)
Q Consensus 1320 ~~k~~LE~~i~~Le~el~e~~~~~~~~~~e~~~e~~~~ll~~-~e~~eLesl~~~l~~~~~kle~~i~~l~~~~~~~~~~ 1398 (1733)
+..+.+...+..++..+.+.............. ....+-.. ++..++..........++..++.+.-+. .
T Consensus 574 k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~-~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~------~-- 644 (859)
T PF01576_consen 574 KQLKKLQAQLKDLQRELEEAQRAREELREQLAV-SERRLRALQAELEELREALEQAERARKQAESELDELQ------E-- 644 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--
Confidence 666666666666665555543332222211110 00000000 1222222222222222333333321110 0
Q ss_pred HHHHHHHHHHHHhhCChhhhhhhhhccchhhhHHHHhhhcchHHHHH----------------------------hhhhh
Q 000277 1399 HEAAENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDTTTAYE----------------------------KVKDE 1450 (1733)
Q Consensus 1399 ~~~a~~L~~el~~e~~~~~~le~~k~~le~~ikeLq~rLdEaE~~~~----------------------------~~~~e 1450 (1733)
.+.........+.+.+..|+..|..|+..|+|+.+.+. ..-..
T Consensus 645 ---------~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~ 715 (859)
T PF01576_consen 645 ---------RLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKE 715 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111112233344455555555555555444222 22222
Q ss_pred hhhhhHHHHhHHhhHHHHHHHHHHHHHhHHHHHHHHHHhhHhHHHHhhhhhhhhhHHHhhhhcCCCHHHHHHHHHhhc-c
Q 000277 1451 RDLHQNKVSKLESDVDALEHSCKELRLKVEDLEAKEEKLKENEAKISLLYDRLSRKEQEAEGLFLSPLQIRKLVDKIS-G 1529 (1733)
Q Consensus 1451 ~~~~kk~i~~LE~rv~~Le~e~~~~~~~~k~~r~~e~~lke~~~~~~~~~~~~~q~ee~~~~~~~~~~~~~~l~dK~~-~ 1529 (1733)
|.....+|..|-+|+.++|...... .-+.+.++|-||++++.+ .+.+ .+-....+-.+-|+. +
T Consensus 716 k~~LE~q~keLq~rl~e~E~~~~~~--~k~~i~kLE~ri~eLE~~----------Le~E----~r~~~~~~k~~rk~er~ 779 (859)
T PF01576_consen 716 KKALERQVKELQARLEEAEQSALKG--GKKQIAKLEARIRELEEE----------LESE----QRRRAEAQKQLRKLERR 779 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--cccHHHHHhHHHHHHHHH----------HHHH----HHHHHHHHHHHHHHHhh
Confidence 2333334444444444444432111 123566778899998662 3322 222233333344444 5
Q ss_pred cccc--cccc-------CCCCCCCchHHHHHHHHHhhhc-----------ccchhhhhhcccchHHHHhhhhhhhHHHHh
Q 000277 1530 IEIP--YAES-------AGDEEPESSAIVKKLFSIINSA-----------TKLPHQIDLLEHGKQELQSILSTQTAEIEH 1589 (1733)
Q Consensus 1530 ~~~~--~~e~-------~~~~~~~~~~~~~k~~~~~~~~-----------~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~ 1589 (1733)
|+-. ++++ ..++......+++.+-..+++| .+++|+++-..+..+.++ +.+..
T Consensus 780 ~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~~k~Rk~q~elee~~e~~~~~e-------~~l~~ 852 (859)
T PF01576_consen 780 VKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRNLAKYRKLQRELEEAEERAEAAE-------RELNK 852 (859)
T ss_dssp ---------------------------------------------------SSSSHHHHHTCCHHHHH-------HHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 5544 3333 2455566777788888888887 456777777777777777 66666
Q ss_pred hHHH
Q 000277 1590 LKGE 1593 (1733)
Q Consensus 1590 l~~~ 1593 (1733)
|+..
T Consensus 853 lr~~ 856 (859)
T PF01576_consen 853 LRAK 856 (859)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6543
No 23
>PRK02224 chromosome segregation protein; Provisional
Probab=99.64 E-value=1.2e-08 Score=140.66 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=11.3
Q ss_pred chhhhHHHHhhhcchHH
Q 000277 1426 AASTIQDLQKKLQDTTT 1442 (1733)
Q Consensus 1426 le~~ikeLq~rLdEaE~ 1442 (1733)
+...++|.-+.||....
T Consensus 813 ~~~ilDEp~~~lD~~~~ 829 (880)
T PRK02224 813 PPLILDEPTVFLDSGHV 829 (880)
T ss_pred CceEecCCcccCCHHHH
Confidence 45677877777765543
No 24
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.56 E-value=8.6e-07 Score=115.35 Aligned_cols=135 Identities=19% Similarity=0.304 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 689 RLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLN 768 (1733)
Q Consensus 689 ~~~~~~l~~~l~~L~~el~~l~~el~~l~~el~~~e~k~~~lre~l~~~~~k~k~l~~el~~l~~~ieel~~eie~lk~e 768 (1733)
...++.+...+..-..++..+...+..+..........+..+++.+.... .+...|...++.+..+++.....
T Consensus 286 K~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke-------~~~~~Lqsdve~Lr~rle~k~~~ 358 (775)
T PF10174_consen 286 KSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKE-------QEAEMLQSDVEALRFRLEEKNSQ 358 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHH
Confidence 33355555555555556666666666665555556666666666665443 33444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000277 769 LQEQESTISECRDQINRLSNDL----DCIRKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDR 830 (1733)
Q Consensus 769 i~~~e~el~~le~el~~L~~~l----e~l~~le~ei~~lk~e~eele~~l~e~e~~l~~l~~~i~e 830 (1733)
+......+..+...+..+..++ +.++..+.+|..+...++.++..+.+....+......+..
T Consensus 359 l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~ 424 (775)
T PF10174_consen 359 LEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS 424 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555544544444444443333 3445666777788888888888888777777766666553
No 25
>PRK03918 chromosome segregation protein; Provisional
Probab=99.54 E-value=3e-07 Score=127.06 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhhhhh--hhcccccc----cCcc----ccccchhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 000277 243 DQYVEVVADRMLSYLA--MVVYQGEL----MDSS----ISGKISHVEQSTYMLIEKYNQMLYEIYQLGQCL 303 (1733)
Q Consensus 243 ~~~~e~~~~r~l~~~~--nvVlQGdv----m~~~----~~~~i~~lE~g~~~~~Ek~~e~~~Eie~L~~~l 303 (1733)
...|+..++ ++.|. -+|.||+| ++|. .++.|- |+..|..-+..+..-+..+...+
T Consensus 114 ~~~i~~~~~--~~~f~~~~~~~Qg~~~~~~~~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 178 (880)
T PRK03918 114 REWVERLIP--YHVFLNAIYIRQGEIDAILESDESREKVVRQIL----GLDDYENAYKNLGEVIKEIKRRI 178 (880)
T ss_pred HHHHHHhcC--HHHhceeEEEeccchHHHhcCcHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 444555443 46673 34579999 3454 334443 55555555554444444444443
No 26
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.4e-06 Score=110.54 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=84.9
Q ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCchhhhhhhhhhccCCCCc-----
Q 000277 1306 QCMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLLSACIDATRELQFEVKNNLLELNSVPELENLNRGFSQPESK----- 1380 (1733)
Q Consensus 1306 e~~e~L~~ql~~le~~k~~LE~~i~~Le~el~e~~~~~~~~~~e~~~e~~~~ll~~~e~~eLesl~~~l~~~~~k----- 1380 (1733)
..+..+......+++.+..+...|..|...-.+.+..+....+.-|..+|+.|+-+..+. +.-|-++
T Consensus 994 ~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs~LLPga~Ak--------L~Ppeg~~~~dG 1065 (1174)
T KOG0933|consen 994 EKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSIFSTLLPGAMAK--------LEPPEGKTVLDG 1065 (1174)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCcccc--------ccCCCCCccccc
Confidence 344455666666777777788888888877777777888888888888999877544332 2222222
Q ss_pred cccc--cccch---hcccCcccHHHHHHHHHHHHHhhCChhhhhhhhhccchhhhHHHHhhhcch
Q 000277 1381 VDGD--DTTDH---QKSLHGNRYHEAAENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDT 1440 (1733)
Q Consensus 1381 le~~--i~~l~---~~~~~~~~~~~~a~~L~~el~~e~~~~~~le~~k~~le~~ikeLq~rLdEa 1440 (1733)
++-. +.-+| ..++|||....+|-.|..++.+.+| +|.-.++|++++||=.
T Consensus 1066 LEvkV~~G~iWKeSL~ELSGGQRSLVALsLIlamL~fkP----------APlYILDEVDAALDLS 1120 (1174)
T KOG0933|consen 1066 LEVKVKFGGIWKESLSELSGGQRSLVALSLILAMLKFKP----------APLYILDEVDAALDLS 1120 (1174)
T ss_pred eEEEEEeCccHHHHHHHhcCchHHHHHHHHHHHHHcCCC----------CceeehhhhHHhhcch
Confidence 2211 11122 5778999999999999999999999 9999999999999743
No 27
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=7.9e-07 Score=113.96 Aligned_cols=395 Identities=14% Similarity=0.168 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 992 KLTEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANV 1071 (1733)
Q Consensus 992 klee~~~~ieeLee~l~kle~~l~~l~ee~~ee~~~~~~~lE~el~~lq~Ele~l~~~l~~~~~~i~~Le~el~~~~~~l 1071 (1733)
.++.+......|.+.+..+..+-. + +.....++..++..+.-+..++......+.....++..+...+..+...+
T Consensus 653 ~~~~L~~~k~rl~eel~ei~~~~~----e-~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i 727 (1141)
T KOG0018|consen 653 EVDQLKEKKERLLEELKEIQKRRK----E-VSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEI 727 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchH
Confidence 334444444455555554444211 2 45555666677777776666666666666666666777777777666777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhHHHHHHHHH-----HHHH
Q 000277 1072 AVLTEQNNVLQVGKTTLENELQMLKDEAGS---------------------QAVKLADAHTTIKSMEDALL-----KAKN 1125 (1733)
Q Consensus 1072 ~~l~~e~~~~e~~l~elk~el~~l~~El~~---------------------~~~el~~~~~el~~L~~~Le-----e~~~ 1125 (1733)
..+..++..+...+.++..++.++.+.+-. ...+.......+..+..+|+ ..+.
T Consensus 728 ~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~ 807 (1141)
T KOG0018|consen 728 SEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQR 807 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHH
Confidence 777777777777777777777776654211 11111222222222222221 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhhHHH
Q 000277 1126 DISVLEGEKRISDQEVSALNSKLNACRDELAGTIGSLESRSVELIGHLNDLQMHMKDERLLSAVKSCFERKIEGLQNMEL 1205 (1733)
Q Consensus 1126 ~le~Le~e~k~l~~Ei~~L~~~l~kl~~Ele~~~~~le~~~~el~~~leele~~lk~~~~l~~ik~e~er~l~~lr~~~~ 1205 (1733)
.++..++....++.++..+...-..+...+... ..++... ....+ +-..+++-++..+.+-...+....+
T Consensus 808 ~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~---k~~~~------~~~~e~~e~~k~~~~~~~~~tkl~~ 877 (1141)
T KOG0018|consen 808 RVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKN---KSKFE------KKEDEINEVKKILRRLVKELTKLDK 877 (1141)
T ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHH---HHHHH------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222222222222222222222111111111111 1111100 00011 1112344455555555555556666
Q ss_pred HHHHHHhchhcc--ccccccccccccccccccccccccccccc------cccchhhhhHHHHHhHHHHHHhhhhhhhhHh
Q 000277 1206 IVEDIRIGVVGK--GSAVTEGNSDVTKSFMDDIDNIEMYDNEV------TVLDADDITSCFRKTAEGFQMRTKILTDTFE 1277 (1733)
Q Consensus 1206 ~iedL~~~l~a~--~raIm~~a~~~kKkle~dlN~iEl~~~~~------~~~~~D~i~k~~rk~~~~~~~r~~~l~~~l~ 1277 (1733)
-+..+.+.++.+ .+. +.++..| |.+|.+.+..- .+-.+|.- .+-+.+ + |+..+.
T Consensus 878 ~i~~~es~ie~~~~er~---~lL~~ck-----l~~I~vPl~~gs~~d~~~~ieidy~-----~L~~~y----~-L~~kl~ 939 (1141)
T KOG0018|consen 878 EITSIESKIERKESERH---NLLSKCK-----LEDIEVPLSSGSMDDIVIGIEIDYS-----GLPREY----K-LQQKLE 939 (1141)
T ss_pred hhhhhhhHHHHHHHHHH---HHHHHhh-----hccccccccCCCccccceecccccc-----cccHHH----H-HHHHHH
Confidence 666666666662 222 2345555 55565554422 23334431 111112 1 566666
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 000277 1278 HFSVSIDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLLSACIDATRELQFEVKNN 1357 (1733)
Q Consensus 1278 e~~~~~d~~i~~~~~~~~~~e~e~~~~~e~~e~L~~ql~~le~~k~~LE~~i~~Le~el~e~~~~~~~~~~e~~~e~~~~ 1357 (1733)
+.+..++.. .+-.+.++.. +.+. +..+......+...-+.....-..+-..--..|.+|+......-.++-+.
T Consensus 940 e~~~~l~~~-~Pn~kA~~~~----d~v~--~~~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F~~va~~Id~IYK~ 1012 (1141)
T KOG0018|consen 940 EKQSVLNRI-APNLKALERL----DEVR--FQEINEEFEAARKEAKKAKNAFNKVKKKRYERFMACFEHVADNIDRIYKE 1012 (1141)
T ss_pred HHHHHHHHh-CcchHHHhhh----hhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655543 4333333332 2222 44444444444444455555566666666778999998887665556666
Q ss_pred hcCCCchh---------h-hhhhhhhccCCCCccccccccchhcccCcccHHHHHHHHHHHHHhhCChhhhhhhhhccch
Q 000277 1358 LLELNSVP---------E-LENLNRGFSQPESKVDGDDTTDHQKSLHGNRYHEAAENLLFSARKAQPLAKLFEMTSTVAA 1427 (1733)
Q Consensus 1358 ll~~~e~~---------e-Lesl~~~l~~~~~kle~~i~~l~~~~~~~~~~~~~a~~L~~el~~e~~~~~~le~~k~~le 1427 (1733)
| +..++. + --.|+.--..||+|-..++.. +|||+...+|-+|+|++...+| +||
T Consensus 1013 L-tnt~g~AyL~~en~~EPyl~GIky~~~pP~KRFr~m~~-----LSGGEKTvAaLALLFaihsy~P----------aPF 1076 (1141)
T KOG0018|consen 1013 L-TNTEGQAYLGLENPEEPYLDGIKYHCMPPGKRFRPMDN-----LSGGEKTVAALALLFAIHSYKP----------APF 1076 (1141)
T ss_pred h-cccccceeecCCCCCcchhcCccccccCCccccCchhh-----cCccHHHHHHHHHHHHhccCCC----------CCc
Confidence 3 322222 1 223344445699999999955 6999999999999999999999 999
Q ss_pred hhhHHHHhhhcchHH
Q 000277 1428 STIQDLQKKLQDTTT 1442 (1733)
Q Consensus 1428 ~~ikeLq~rLdEaE~ 1442 (1733)
=.++|++++||..-.
T Consensus 1077 fvlDEiDAALDntNi 1091 (1141)
T KOG0018|consen 1077 FVLDEIDAALDNTNI 1091 (1141)
T ss_pred eehhhHHHHhhhccH
Confidence 999999999997643
No 28
>PRK01156 chromosome segregation protein; Provisional
Probab=99.45 E-value=1e-06 Score=121.54 Aligned_cols=61 Identities=23% Similarity=0.226 Sum_probs=37.2
Q ss_pred HhHHHH-HHHHHHhhhhhh--hcccccc-----cCcc----ccccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 000277 242 KDQYVE-VVADRMLSYLAM--VVYQGEL-----MDSS----ISGKISHVEQSTYMLIEKYNQMLYEIYQLGQCLSKP 306 (1733)
Q Consensus 242 ~~~~~e-~~~~r~l~~~~n--vVlQGdv-----m~~~----~~~~i~~lE~g~~~~~Ek~~e~~~Eie~L~~~l~e~ 306 (1733)
....+. ..+|...++|.| ++.||+| |+|. .++.+. |+..|..-+..+..-+..++..+...
T Consensus 113 ~~~~i~~~il~~~~~~f~~~i~~~Qg~~~~l~~~~~~~r~~~ld~~~----~~~~~~~~~~~~~~~~~~~~~ei~~l 185 (895)
T PRK01156 113 TTKYIEKNILGISKDVFLNSIFVGQGEMDSLISGDPAQRKKILDEIL----EINSLERNYDKLKDVIDMLRAEISNI 185 (895)
T ss_pred HHHHHHHHHcCCCHHHhceeEEEeccchHHHHhCCHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 455655677733 5789998 4666 445555 77777666666666666655555443
No 29
>PRK03918 chromosome segregation protein; Provisional
Probab=99.41 E-value=1.4e-05 Score=110.54 Aligned_cols=8 Identities=13% Similarity=0.156 Sum_probs=3.3
Q ss_pred hHhhhhhh
Q 000277 1277 EHFSVSID 1284 (1733)
Q Consensus 1277 ~e~~~~~d 1284 (1733)
+++.+.+|
T Consensus 819 DEp~~~lD 826 (880)
T PRK03918 819 DEPTPFLD 826 (880)
T ss_pred eCCCcccC
Confidence 44444333
No 30
>PRK01156 chromosome segregation protein; Provisional
Probab=99.31 E-value=2.6e-05 Score=107.81 Aligned_cols=13 Identities=8% Similarity=0.411 Sum_probs=4.8
Q ss_pred HhhHHHHHHHHHh
Q 000277 1200 LQNMELIVEDIRI 1212 (1733)
Q Consensus 1200 lr~~~~~iedL~~ 1212 (1733)
+.....++.++..
T Consensus 728 l~~~~~~~~~l~~ 740 (895)
T PRK01156 728 MKKIKKAIGDLKR 740 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333443333
No 31
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.18 E-value=0.00028 Score=99.19 Aligned_cols=21 Identities=0% Similarity=-0.054 Sum_probs=19.1
Q ss_pred hcccCCchHHHHHHHHHHHhh
Q 000277 626 SQTSSDPTAIISKCIGKIREQ 646 (1733)
Q Consensus 626 ~~~avd~~~~a~~~i~~LK~~ 646 (1733)
..++|++...|..||.+|-..
T Consensus 711 ~~iVv~d~~~A~~ai~~L~~~ 731 (1486)
T PRK04863 711 HAIVVPDLSDAAEQLAGLEDC 731 (1486)
T ss_pred CeEEeCCHHHHHHHHHhccCC
Confidence 777899999999999999885
No 32
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.12 E-value=0.0005 Score=97.17 Aligned_cols=71 Identities=17% Similarity=0.296 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 751 LKLQLDEKNSEIEKLKLNLQEQESTISECRD-QINRLSNDLDCIRKMEADLIAMKDERNQFEHFLLESNNML 821 (1733)
Q Consensus 751 l~~~ieel~~eie~lk~ei~~~e~el~~le~-el~~L~~~le~l~~le~ei~~lk~e~eele~~l~e~e~~l 821 (1733)
+...+..+...+..++..++.++.....+.. .+..+...++.+.....++..+...+..+.....+.+...
T Consensus 311 ~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky 382 (1201)
T PF12128_consen 311 LNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKY 382 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444332 2333344444444444444444444444444444444333
No 33
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.03 E-value=0.00021 Score=93.38 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=28.1
Q ss_pred cccccccCCCCccchhhHHhhhhhcccccccccCCCCCccccchhh
Q 000277 54 ESVASNEAEPSYSEENIVVSLKENQNQNHLVETDVGSGSNHELERL 99 (1733)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (1733)
.+++++.-..----.|.-+.+..+.| |+.|.+|+|-+-+++++
T Consensus 40 G~I~sI~L~NFMCHsnL~IeFg~~vN---fI~G~NGSGKSAIltAl 82 (1074)
T KOG0250|consen 40 GKIESIHLTNFMCHSNLLIEFGPRVN---FIVGNNGSGKSAILTAL 82 (1074)
T ss_pred ceEEEEEEeeecccccceeccCCCce---EeecCCCCcHHHHHHHH
Confidence 34455444333344455555666666 89999999999888775
No 34
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.89 E-value=0.0032 Score=89.25 Aligned_cols=14 Identities=29% Similarity=0.029 Sum_probs=6.6
Q ss_pred CCccccchhhhhhc
Q 000277 90 SGSNHELERLRNLL 103 (1733)
Q Consensus 90 ~~~~~~~~~~~~~~ 103 (1733)
+-=+|+..++.|++
T Consensus 68 SyIIYEY~R~~G~~ 81 (1201)
T PF12128_consen 68 SYIIYEYQREDGQL 81 (1201)
T ss_pred ceEEEeeeccCCce
Confidence 34444445555543
No 35
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.84 E-value=0.0021 Score=84.41 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=28.9
Q ss_pred cccCcccHHHHHHHHHHHHHhhCChhhhhhhhhccchhhhHHHHhhhcch
Q 000277 1391 KSLHGNRYHEAAENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDT 1440 (1733)
Q Consensus 1391 ~~~~~~~~~~~a~~L~~el~~e~~~~~~le~~k~~le~~ikeLq~rLdEa 1440 (1733)
..+|||+..-...+|+-+|-..-+ .||+-++|.+.=.|.+
T Consensus 988 ~gLSGGERSFsTv~lllsLW~~me----------~Pfr~LDEFDVFMD~v 1027 (1074)
T KOG0250|consen 988 RGLSGGERSFSTVCLLLSLWEVME----------CPFRALDEFDVFMDMV 1027 (1074)
T ss_pred cccCcccchHHHHHHHHHHhHhhc----------CchhhhhHHHHHHHHH
Confidence 457999998887766665554443 8899999988766554
No 36
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.72 E-value=0.0041 Score=80.41 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Q 000277 701 VASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLK 766 (1733)
Q Consensus 701 ~L~~el~~l~~el~~l~~el~~~e~k~~~lre~l~~~~~k~k~l~~el~~l~~~ieel~~eie~lk 766 (1733)
.+...++.|.+.+..+...+...+..+.++...+..+...+..|..+...+.....++...++.++
T Consensus 1229 ~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1229 QLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444445555555555555555555555555555444444444444455555555555555555443
No 37
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.71 E-value=0.0034 Score=80.78 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhhhcccchhhhhhcccchHHHH
Q 000277 1545 SSAIVKKLFSIINSATKLPHQIDLLEHGKQELQ 1577 (1733)
Q Consensus 1545 ~~~~~~k~~~~~~~~~~~~~~~~~l~~~~~~l~ 1577 (1733)
..+-|-.+..+++|-.++.-+-++|+-.+..|-
T Consensus 877 ~~se~vtl~rf~nEsnr~~s~h~~ls~qn~eLs 909 (1195)
T KOG4643|consen 877 PISELVTLNRFLNESNRNLSQHEILSTQNKELS 909 (1195)
T ss_pred hHHHHHHHHHHHHHhhccchhhhhhhhhhHHHH
Confidence 345567888899999888888888877777765
No 38
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.65 E-value=0.0022 Score=80.01 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHHH
Q 000277 1164 SRSVELIGHLNDLQM 1178 (1733)
Q Consensus 1164 ~~~~el~~~leele~ 1178 (1733)
....++..++..|+.
T Consensus 438 ~EkQeL~~yi~~Le~ 452 (546)
T PF07888_consen 438 EEKQELLEYIERLEQ 452 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 39
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.64 E-value=0.015 Score=82.30 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1114 KSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDE 1154 (1733)
Q Consensus 1114 ~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~kl~~E 1154 (1733)
..|...|.........|+..+...+.++..+..++.....+
T Consensus 1063 ~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e 1103 (1486)
T PRK04863 1063 DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERD 1103 (1486)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666677777777777777777666666554333
No 40
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.62 E-value=0.0072 Score=77.88 Aligned_cols=138 Identities=19% Similarity=0.229 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000277 1009 QVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTL 1088 (1733)
Q Consensus 1009 kle~~l~~l~ee~~ee~~~~~~~lE~el~~lq~Ele~l~~~l~~~~~~i~~Le~el~~~~~~l~~l~~e~~~~e~~l~el 1088 (1733)
.....|.....+ ...++....++..++.+.+.++..+..+.......+..|..++......+..+...-......+..+
T Consensus 292 ~ak~~L~~~k~E-~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l 370 (522)
T PF05701_consen 292 EAKKELEKAKEE-ASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSEL 370 (522)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHH
Confidence 333333333333 4445555566666666677777777777777777777788877777777777777766666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1089 ENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSK 1147 (1733)
Q Consensus 1089 k~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~ 1147 (1733)
...+..+..+.+.+.........++..++..++.....+...+..+.....++.....-
T Consensus 371 ~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKas 429 (522)
T PF05701_consen 371 PKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKAS 429 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777766666666655555554433
No 41
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.58 E-value=0.0042 Score=77.65 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 849 IASYINECHDTKTQLEQELGNVKQEASALASELAE 883 (1733)
Q Consensus 849 l~~~i~~Le~~l~ele~ei~~l~~~l~ele~el~~ 883 (1733)
+...++.++..+...+.....+...+.++.....+
T Consensus 288 LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDr 322 (546)
T PF07888_consen 288 LKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDR 322 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443333333
No 42
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.51 E-value=0.014 Score=75.34 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 692 LNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLS 735 (1733)
Q Consensus 692 ~~~l~~~l~~L~~el~~l~~el~~l~~el~~~e~k~~~lre~l~ 735 (1733)
+..+...+..+...+...+........+|.....-+..+..+|.
T Consensus 36 L~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe 79 (522)
T PF05701_consen 36 LEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLE 79 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444443
No 43
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.50 E-value=0.016 Score=75.77 Aligned_cols=19 Identities=11% Similarity=-0.016 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 000277 842 PLEKVNWIASYINECHDTK 860 (1733)
Q Consensus 842 ~~~ki~~l~~~i~~Le~~l 860 (1733)
...++..+...+......+
T Consensus 254 i~~~i~~l~~~i~~~~~~l 272 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALL 272 (569)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544433
No 44
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.45 E-value=0.034 Score=77.07 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=46.7
Q ss_pred hHhHHHHHHHHHHhhhh--hhhcccccc---c--Ccc-------ccccchhhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 000277 241 EKDQYVEVVADRMLSYL--AMVVYQGEL---M--DSS-------ISGKISHVEQSTYMLIEKYNQMLYEIYQLGQCLS 304 (1733)
Q Consensus 241 ~~~~~~e~~~~r~l~~~--~nvVlQGdv---m--~~~-------~~~~i~~lE~g~~~~~Ek~~e~~~Eie~L~~~l~ 304 (1733)
..+..|...+|..++.| .-++.||+| + +|. .+.++..|+.....+.+.+..+...++.+...+.
T Consensus 118 ~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 118 DVNEKIEELLGLDKDTFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hHHHHHHHHhCCCHHHHhHHheeccHhHHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788778888 667889999 3 333 4555566666777777888888888888887777
No 45
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.42 E-value=0.00029 Score=81.50 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000277 933 QTSKFAEACASRKSLEDEMSVAKNNMSVLICEK 965 (1733)
Q Consensus 933 l~~~leEl~~~~~~L~~~l~~le~el~~L~e~l 965 (1733)
.....++..+....+.+........+..+..++
T Consensus 69 ~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l 101 (237)
T PF00261_consen 69 AEKRADESERARKVLENREQSDEERIEELEQQL 101 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333333333333
No 46
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.42 E-value=0.025 Score=74.08 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=32.7
Q ss_pred hhhHhhHHhHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 000277 1156 AGTIGSLESRSVELIGHLNDLQMHMK-DERLLSAVKSCFERKIEGLQNMELIVEDIRI 1212 (1733)
Q Consensus 1156 e~~~~~le~~~~el~~~leele~~lk-~~~~l~~ik~e~er~l~~lr~~~~~iedL~~ 1212 (1733)
.++-..+-..-..+...+..+...+. .|.+|.+|...++..............+|..
T Consensus 440 pgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~ 497 (569)
T PRK04778 440 PGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVE 497 (569)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333343344444444555554443 4667888866777776666666666666666
No 47
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.38 E-value=0.00038 Score=80.50 Aligned_cols=99 Identities=19% Similarity=0.281 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000277 1052 EAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLE 1131 (1733)
Q Consensus 1052 ~~~~~i~~Le~el~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~Le 1131 (1733)
.....+..++..+......+..+..++..++..+......+..+...-.........+...+..|...+..+.......+
T Consensus 117 E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE 196 (237)
T PF00261_consen 117 EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAE 196 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333343333333334444444444444444444333333333333334444444444444444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000277 1132 GEKRISDQEVSALNSKLNA 1150 (1733)
Q Consensus 1132 ~e~k~l~~Ei~~L~~~l~k 1150 (1733)
+....|+..+..+...|..
T Consensus 197 ~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 197 RRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5444444444444444443
No 48
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.32 E-value=0.037 Score=71.85 Aligned_cols=13 Identities=8% Similarity=0.337 Sum_probs=6.9
Q ss_pred cchhhhHHHHhhh
Q 000277 1425 VAASTIQDLQKKL 1437 (1733)
Q Consensus 1425 ~le~~ikeLq~rL 1437 (1733)
.+-||+++|-.++
T Consensus 900 ~ls~qn~eLs~~~ 912 (1195)
T KOG4643|consen 900 ILSTQNKELSQRA 912 (1195)
T ss_pred hhhhhhHHHHHHH
Confidence 4556666554443
No 49
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.30 E-value=0.03 Score=70.02 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhhhh----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1292 RKLQTTRDEVVRMTQCMDS----LRGKVKNLEGCKQEHEEAMVMLQNDATVLLSACI 1344 (1733)
Q Consensus 1292 ~~~~~~e~e~~~~~e~~e~----L~~ql~~le~~k~~LE~~i~~Le~el~e~~~~~~ 1344 (1733)
.-+-.....|+.+.+..+. .+..=......+..|+.++..+..++..+-.++.
T Consensus 707 ALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk~el~slK~QLk 763 (786)
T PF05483_consen 707 ALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLKNELSSLKKQLK 763 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3334444566655555332 2222222223455555566666655555544443
No 50
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.26 E-value=0.052 Score=70.81 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 704 EEFGALKEEKESQQKDLERSEEKSALLREKLSMAVK 739 (1733)
Q Consensus 704 ~el~~l~~el~~l~~el~~~e~k~~~lre~l~~~~~ 739 (1733)
..++.+......|+..+.....++..+...|++...
T Consensus 1225 ~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~ 1260 (1758)
T KOG0994|consen 1225 EDIAQLASATESLRRQLQALTEDLPQEEETLSDITN 1260 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 344444445555555555555555555555544433
No 51
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.22 E-value=0.0061 Score=76.23 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000277 851 SYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEA 930 (1733)
Q Consensus 851 ~~i~~Le~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele~~i~~L~ke~~~le~~~~el~~eLe~~~~el 930 (1733)
+....++..+..+..++..++..+.............+..+..-+..++..+.-+...+..++.++..+..+...+..++
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l 185 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREEL 185 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33334444444444444444444444444444445555555555566666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000277 931 HIQTSKFAEACASRKSLEDEMSVAKNNMSVLI 962 (1733)
Q Consensus 931 ~~l~~~leEl~~~~~~L~~~l~~le~el~~L~ 962 (1733)
......++........+...++.+..+|.-+.
T Consensus 186 ~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 186 ARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66666666655555666666666666555554
No 52
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.18 E-value=0.055 Score=68.10 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=10.2
Q ss_pred HHHHHHhhcCCccccccCccchhhh
Q 000277 1618 LEKIVNMLESNEFVVNQKSSGSKGL 1642 (1733)
Q Consensus 1618 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1642 (1733)
++|.+-|+|. .++|+.-|+|
T Consensus 894 ~~r~l~I~ap-----~~~saerwA~ 913 (1265)
T KOG0976|consen 894 LERLLMIAAP-----SPKSAERWAL 913 (1265)
T ss_pred hhhhheeecC-----CCccHHHHHH
Confidence 4555555443 2455555554
No 53
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.16 E-value=0.07 Score=68.32 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000277 1045 SQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDE 1098 (1733)
Q Consensus 1045 ~l~~~l~~~~~~i~~Le~el~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~~E 1098 (1733)
+++.+++.++..+..+...+......+-....-+.+|..-+..+...+..+.++
T Consensus 494 DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq 547 (1243)
T KOG0971|consen 494 DLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQ 547 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455555555555555555555555555555666666666666665555554
No 54
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.15 E-value=0.038 Score=66.97 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 950 EMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQ 989 (1733)
Q Consensus 950 ~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l 989 (1733)
....++.++..++..++.....+..++..+..+..++..+
T Consensus 97 ~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl 136 (312)
T PF00038_consen 97 ERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL 136 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555555555555555555443
No 55
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.13 E-value=0.053 Score=65.78 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 845 KVNWIASYINECHDTKTQLEQELGN 869 (1733)
Q Consensus 845 ki~~l~~~i~~Le~~l~ele~ei~~ 869 (1733)
++..+-..++.|+.+-..+..++..
T Consensus 12 Rla~YIekVr~LE~~N~~Le~~i~~ 36 (312)
T PF00038_consen 12 RLASYIEKVRFLEQENKRLESEIEE 36 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3444444444444444444444433
No 56
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.12 E-value=0.015 Score=72.84 Aligned_cols=75 Identities=13% Similarity=0.190 Sum_probs=49.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHhhHHhHHHHHHHHHHHHHHHHhch
Q 000277 1109 AHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACR----DELAGTIGSLESRSVELIGHLNDLQMHMKDE 1183 (1733)
Q Consensus 1109 ~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~kl~----~Ele~~~~~le~~~~el~~~leele~~lk~~ 1183 (1733)
...++..+...+..+...+..++..+..+...|.+|..+++.-. ..|......+..+..+++..+-+++..+..+
T Consensus 294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~k 372 (546)
T KOG0977|consen 294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTK 372 (546)
T ss_pred HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 33445555556666666677777777777777777777766322 2355566667777777888888888766553
No 57
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.97 E-value=0.13 Score=64.90 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhc----hhHHHHHHHHHHHHHH
Q 000277 1165 RSVELIGHLNDLQMHMKD----ERLLSAVKSCFERKIE 1198 (1733)
Q Consensus 1165 ~~~el~~~leele~~lk~----~~~l~~ik~e~er~l~ 1198 (1733)
.+.++..++..+.+.+.. +....++|....|.-.
T Consensus 460 Qcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqak 497 (1265)
T KOG0976|consen 460 QCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAK 497 (1265)
T ss_pred HHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHH
Confidence 355566666666555433 3356677777766543
No 58
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.94 E-value=0.33 Score=68.29 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=54.0
Q ss_pred hHhHHHHHHHHHHhhhh--hhhcccccc-----cCcc-------ccccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 000277 241 EKDQYVEVVADRMLSYL--AMVVYQGEL-----MDSS-------ISGKISHVEQSTYMLIEKYNQMLYEIYQLGQCLSKP 306 (1733)
Q Consensus 241 ~~~~~~e~~~~r~l~~~--~nvVlQGdv-----m~~~-------~~~~i~~lE~g~~~~~Ek~~e~~~Eie~L~~~l~e~ 306 (1733)
..+..|+..+|..++.| .-|++||+| ++|. .+.++..|.+....+.+++.+....+..+...+..+
T Consensus 131 ~v~~~i~~llgl~~~~F~~~v~l~QG~f~~fl~a~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~~~ 210 (1047)
T PRK10246 131 DKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGV 210 (1047)
T ss_pred HHHHHHHHHhCCCHHHhhhheeeccccHHHHHhCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45777888899999999 667789999 3444 666777777777778899999999999999999766
Q ss_pred C
Q 000277 307 D 307 (1733)
Q Consensus 307 ~ 307 (1733)
.
T Consensus 211 ~ 211 (1047)
T PRK10246 211 A 211 (1047)
T ss_pred c
Confidence 5
No 59
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.19 Score=64.90 Aligned_cols=100 Identities=19% Similarity=0.247 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1056 TIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKR 1135 (1733)
Q Consensus 1056 ~i~~Le~el~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~Le~e~k 1135 (1733)
.+..+......+...+..++.+.+.+......+..++..+..-+......+.++......|+..++.....+..+.....
T Consensus 511 ~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~ 590 (698)
T KOG0978|consen 511 QILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYA 590 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000277 1136 ISDQEVSALNSKLNACRDEL 1155 (1733)
Q Consensus 1136 ~l~~Ei~~L~~~l~kl~~El 1155 (1733)
....++..+..+...+..++
T Consensus 591 e~~~ele~~~~k~~rleEE~ 610 (698)
T KOG0978|consen 591 ELELELEIEKFKRKRLEEEL 610 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333
No 60
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.84 E-value=0.32 Score=65.13 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=40.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Q 000277 1103 AVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGTIGSLE 1163 (1733)
Q Consensus 1103 ~~el~~~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~kl~~Ele~~~~~le 1163 (1733)
..-+.....+..-|...+...+...+.+.+.......+...|+..++.-+..-......+.
T Consensus 720 e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs 780 (1317)
T KOG0612|consen 720 ENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK 780 (1317)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 3334446666667777777777788888888888888888888877765444333344444
No 61
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.70 E-value=0.43 Score=62.42 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 000277 773 ESTISECRDQINRL 786 (1733)
Q Consensus 773 e~el~~le~el~~L 786 (1733)
......|+..++++
T Consensus 59 ~~~fe~w~~~w~~i 72 (560)
T PF06160_consen 59 EEKFEEWRQKWDEI 72 (560)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555544
No 62
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.65 E-value=0.49 Score=61.74 Aligned_cols=26 Identities=15% Similarity=0.274 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1118 DALLKAKNDISVLEGEKRISDQEVSA 1143 (1733)
Q Consensus 1118 ~~Lee~~~~le~Le~e~k~l~~Ei~~ 1143 (1733)
.+|..+...+..+..+|..++..++.
T Consensus 286 ~ELq~~qe~Lea~~qqNqqL~~qls~ 311 (617)
T PF15070_consen 286 QELQEAQEHLEALSQQNQQLQAQLSL 311 (617)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 44555555666666666555554443
No 63
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=0.37 Score=60.11 Aligned_cols=134 Identities=18% Similarity=0.216 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 699 LRVASEEFGALKEEKESQQKDLER---SEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQEQEST 775 (1733)
Q Consensus 699 l~~L~~el~~l~~el~~l~~el~~---~e~k~~~lre~l~~~~~k~k~l~~el~~l~~~ieel~~eie~lk~ei~~~e~e 775 (1733)
......+++.++....++.+.+.. ...+...+++.......-......-...++.....+...++.++.++...+.+
T Consensus 230 ~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE 309 (581)
T KOG0995|consen 230 FTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEE 309 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555544444444332 22333333333332222111222223344444445555555666666666666
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000277 776 ISECRDQINRLSNDLDCIRKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRII 832 (1733)
Q Consensus 776 l~~le~el~~L~~~le~l~~le~ei~~lk~e~eele~~l~e~e~~l~~l~~~i~el~ 832 (1733)
+..++.+.++|...++--.---.++..+..+..++...+......++++...+.+..
T Consensus 310 ~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~ 366 (581)
T KOG0995|consen 310 IEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELK 366 (581)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 666666555555444322222234555555556666666666655555555444443
No 64
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.63 E-value=0.00026 Score=95.09 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 779 CRDQINRLSNDLDCIRKMEADLIAMKDERNQFEHFLLESNN 819 (1733)
Q Consensus 779 le~el~~L~~~le~l~~le~ei~~lk~e~eele~~l~e~e~ 819 (1733)
++.+...|...+..++.+..++..+.-++..++..+.....
T Consensus 286 LeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~s 326 (722)
T PF05557_consen 286 LEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWES 326 (722)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666666666666666655544
No 65
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.60 E-value=0.46 Score=60.04 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000277 318 TVFAAARDELLNLKRRE 334 (1733)
Q Consensus 318 ~~~~~l~~El~elk~~~ 334 (1733)
.-|-.|-++...++.|-
T Consensus 78 ~LySKL~~EaEKIk~WK 94 (786)
T PF05483_consen 78 RLYSKLYKEAEKIKKWK 94 (786)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556666667777773
No 66
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.54 E-value=0.00036 Score=93.79 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 000277 1187 SAVKSCFERKIEGLQN 1202 (1733)
Q Consensus 1187 ~~ik~e~er~l~~lr~ 1202 (1733)
..++..|..+..+-+.
T Consensus 623 ~RLkevf~~ks~eFr~ 638 (722)
T PF05557_consen 623 QRLKEVFKAKSQEFRE 638 (722)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566666655554
No 67
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.54 E-value=1.1 Score=62.63 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=3.8
Q ss_pred hHhhhhhhH
Q 000277 1277 EHFSVSIDE 1285 (1733)
Q Consensus 1277 ~e~~~~~d~ 1285 (1733)
++..+.+|.
T Consensus 848 DEpf~~LD~ 856 (908)
T COG0419 848 DEPFGTLDE 856 (908)
T ss_pred eCCCCCCCH
Confidence 444444444
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.43 E-value=0.14 Score=67.74 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1084 GKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRD 1153 (1733)
Q Consensus 1084 ~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~kl~~ 1153 (1733)
....+-..+..++++-..++..+..-+.-..+|=.+|.++..+++-++..+..-+.||.+|..++..++.
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555554444444544444445555678888888888888888888888888887776554
No 69
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.31 Score=62.47 Aligned_cols=94 Identities=11% Similarity=0.170 Sum_probs=53.7
Q ss_pred ccccccCcccccc--CCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhchhhHHHhhh
Q 000277 151 EKEFGESDGKRQV--GDAPLHELLSECSQFLRSALEERSKNESAIREINAVLYKKDREIEHLNAKVAEILVSHDVAAAYL 228 (1733)
Q Consensus 151 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~~~~~~ 228 (1733)
.|.+.|.+.+.++ ++--|..|-+.|-- -|+++.+-.+-.|+|-+.+.- |+.+...|..
T Consensus 5 ~~~~~g~~q~~k~~s~aETI~kLcDRves--sTL~eDRR~A~rgLKa~srkY--------R~~Vga~Gmk---------- 64 (970)
T KOG0946|consen 5 RGSYNGGQQPPKQQSAAETIEKLCDRVES--STLLEDRRDAVRGLKAFSRKY--------REEVGAQGMK---------- 64 (970)
T ss_pred hhcccccCCCCccccHHhHHHHHHHHHhh--ccchhhHHHHHHHHHHHHHHH--------HHHHHHcccH----------
Confidence 3455555555333 55556666554432 245678877777777766443 2233333331
Q ss_pred hcccccCcHHHHhHhHHHHHHHHHHhhhhhhhcccccc---cCcc
Q 000277 229 NSAAGITSEAQIEKDQYVEVVADRMLSYLAMVVYQGEL---MDSS 270 (1733)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~e~~~~r~l~~~~nvVlQGdv---m~~~ 270 (1733)
++-+.++.+.-=...++-.|+++.||+.-||. |+.+
T Consensus 65 ------~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds 103 (970)
T KOG0946|consen 65 ------PLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDS 103 (970)
T ss_pred ------HHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccc
Confidence 12233344444456778888999999999975 7533
No 70
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.37 E-value=1.1 Score=58.78 Aligned_cols=20 Identities=10% Similarity=0.001 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000277 955 KNNMSVLICEKEEAQASGAA 974 (1733)
Q Consensus 955 e~el~~L~e~lee~q~~k~~ 974 (1733)
...++.+-..++..-.++..
T Consensus 284 ~~~Id~lYd~le~E~~Ak~~ 303 (560)
T PF06160_consen 284 EERIDQLYDILEKEVEAKKY 303 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333443333333333333
No 71
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.32 E-value=5e-05 Score=101.60 Aligned_cols=14 Identities=14% Similarity=0.257 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHhh
Q 000277 633 TAIISKCIGKIREQ 646 (1733)
Q Consensus 633 ~~~a~~~i~~LK~~ 646 (1733)
-..+..||..+-..
T Consensus 143 Q~~im~~Iqev~~~ 156 (713)
T PF05622_consen 143 QHAIMEAIQEVTSN 156 (713)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 34456666666554
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.27 E-value=0.23 Score=65.71 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 000277 1000 IKSLEDSLAQVEANV 1014 (1733)
Q Consensus 1000 ieeLee~l~kle~~l 1014 (1733)
...|+..+++++..+
T Consensus 547 ~~~lE~E~~~lr~el 561 (697)
T PF09726_consen 547 RRQLESELKKLRREL 561 (697)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 73
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.25 E-value=0.093 Score=69.14 Aligned_cols=17 Identities=12% Similarity=0.407 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000277 1000 IKSLEDSLAQVEANVAM 1016 (1733)
Q Consensus 1000 ieeLee~l~kle~~l~~ 1016 (1733)
+..++..+..+...+..
T Consensus 257 L~~l~~~~~~~~~~l~~ 273 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQ 273 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333444333
No 74
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.19 E-value=0.44 Score=62.79 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000277 845 KVNWIASYINECHDTKTQLEQE 866 (1733)
Q Consensus 845 ki~~l~~~i~~Le~~l~ele~e 866 (1733)
++..+...+..++.++..+...
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~ 321 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTA 321 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333
No 75
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.17 E-value=0.85 Score=59.38 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=36.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1109 AHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDEL 1155 (1733)
Q Consensus 1109 ~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~kl~~El 1155 (1733)
....|..+...+.+-...|...-...+.++.++..+..++.....-.
T Consensus 489 Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~ 535 (594)
T PF05667_consen 489 YTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVT 535 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 55667777778888888888888888888888888888888654443
No 76
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.14 E-value=1.8 Score=56.73 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 695 LSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLS 735 (1733)
Q Consensus 695 l~~~l~~L~~el~~l~~el~~l~~el~~~e~k~~~lre~l~ 735 (1733)
+..+...+..++..+..+.......+..++..+..++..+.
T Consensus 27 ~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 27 WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555566666666666666666666666666666655443
No 77
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.09 E-value=1.5 Score=55.17 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1119 ALLKAKNDISVLEGEKRISDQEVSALNSKLNA 1150 (1733)
Q Consensus 1119 ~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~k 1150 (1733)
.+............++..++.++..+..++..
T Consensus 719 ~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~ 750 (961)
T KOG4673|consen 719 SLEKERNRAAENRQEYLAAQEEADTLEGRANQ 750 (961)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444333
No 78
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.08 E-value=0.93 Score=52.53 Aligned_cols=212 Identities=17% Similarity=0.286 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 929 EAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLA 1008 (1733)
Q Consensus 929 el~~l~~~leEl~~~~~~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~klee~~~~ieeLee~l~ 1008 (1733)
+...+...++........+...+.+.+..+.......+..+.++..++..+.....+.--+..++. ..+..+.+...
T Consensus 71 ENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn---~d~S~lkd~ne 147 (305)
T PF14915_consen 71 ENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMN---SDVSNLKDNNE 147 (305)
T ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhc---chHHhHHHHhH
Confidence 333344455555555555666666666555555555555556666665555555544433333332 11222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1009 QVEANVAMLTEQNKEEAQASGAAAVLELEQVREE-------FVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVL 1081 (1733)
Q Consensus 1009 kle~~l~~l~ee~~ee~~~~~~~lE~el~~lq~E-------le~l~~~l~~~~~~i~~Le~el~~~~~~l~~l~~e~~~~ 1081 (1733)
-+... +..+..+..+++.+++..... ++....++..+..+++.++.-...-...+.....++..+
T Consensus 148 ~LsQq--------LskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~ 219 (305)
T PF14915_consen 148 ILSQQ--------LSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESL 219 (305)
T ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22222 222222333333333333333 333444444455555555555555556666666666666
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1082 QVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDAL--------LKAKNDISVLEGEKRISDQEVSALNSKLNAC 1151 (1733)
Q Consensus 1082 e~~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~L--------ee~~~~le~Le~e~k~l~~Ei~~L~~~l~kl 1151 (1733)
+..+..+..+-.=+...++.+..+.......+-+++... .+...+.--|+..|+.+-.+...|..++..+
T Consensus 220 eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qy 297 (305)
T PF14915_consen 220 EERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQY 297 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666665555555555544 3344444446667777777777776666554
No 79
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.77 Score=59.06 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000277 1063 ALSQVEANVAVLTEQNNVLQVGKTTLENELQMLK 1096 (1733)
Q Consensus 1063 el~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~ 1096 (1733)
+......++.++..+++-.+..+..+..++..+.
T Consensus 849 e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 849 ELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 3334444555555555555555555555544444
No 80
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.96 E-value=0.8 Score=49.73 Aligned_cols=79 Identities=10% Similarity=0.123 Sum_probs=40.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 940 ACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLT 1018 (1733)
Q Consensus 940 l~~~~~~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~klee~~~~ieeLee~l~kle~~l~~l~ 1018 (1733)
..+.+..+...+.-..+++.......+-....+..+..++.-+.+.+..+...-+.+....+..+..++.+..++....
T Consensus 79 adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE 157 (205)
T KOG1003|consen 79 ADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAE 157 (205)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Confidence 3334444444444445555555444444444555555555555555555555555555555555555555555544433
No 81
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.94 E-value=0.0002 Score=95.86 Aligned_cols=10 Identities=10% Similarity=0.016 Sum_probs=4.1
Q ss_pred HhhhHhhHhh
Q 000277 498 LKGISLDFYK 507 (1733)
Q Consensus 498 l~~~~~e~~~ 507 (1733)
+.++...++|
T Consensus 37 L~evL~qIDp 46 (713)
T PF05622_consen 37 LAEVLHQIDP 46 (713)
T ss_dssp HHHHHHHH-T
T ss_pred HHHHHHHhCc
Confidence 3344444554
No 82
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.84 E-value=1 Score=48.99 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=25.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1107 ADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDE 1154 (1733)
Q Consensus 1107 ~~~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~kl~~E 1154 (1733)
......+..+.+.|.++...-+..++....|+.++.+|...+......
T Consensus 140 d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 140 EKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence 333444444444555555555555566666666666655555443333
No 83
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.81 E-value=3.3 Score=54.63 Aligned_cols=61 Identities=21% Similarity=0.144 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhH
Q 000277 400 LVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAE----LSKEEFIKTENLVASLQETLQQSN 460 (1733)
Q Consensus 400 l~~~~~~Lk~elee~~~ele~~~~ele~~~~~le~~e----~l~~el~~~k~~~~~L~~~~~ek~ 460 (1733)
++.....++..+.....+.+++......+....+.++ .|+.++..+|.....+-..+.+.+
T Consensus 39 l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselE 103 (717)
T PF09730_consen 39 LENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELE 103 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3333344444444555555555555544444444433 355666666655555555444433
No 84
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.79 E-value=3.4 Score=54.50 Aligned_cols=40 Identities=20% Similarity=0.171 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000277 560 NEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIVEKANK 599 (1733)
Q Consensus 560 ~~~~~l~~~l~~~~~E~e~L~~eL~~l~~e~~e~~~~~~~ 599 (1733)
.++..|...|.++..++..|-..|+..+..+......++.
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~ 304 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSE 304 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666667777777776666666555444443
No 85
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.77 E-value=2.2 Score=55.70 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000277 763 EKLKLNLQEQESTISECRDQI 783 (1733)
Q Consensus 763 e~lk~ei~~~e~el~~le~el 783 (1733)
.+|+.-++.....+..+..+|
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qW 417 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQW 417 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 86
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.76 E-value=2.1 Score=51.58 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1069 ANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKL 1148 (1733)
Q Consensus 1069 ~~l~~l~~e~~~~e~~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l 1148 (1733)
..+.-...+...|+..+..-+.-+..+..+++.+.+.+..+..+...++...+.....+-.+-.++.....++..+..++
T Consensus 216 ~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~ 295 (309)
T PF09728_consen 216 EQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKI 295 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HH
Q 000277 1149 NA 1150 (1733)
Q Consensus 1149 ~k 1150 (1733)
.+
T Consensus 296 ~k 297 (309)
T PF09728_consen 296 EK 297 (309)
T ss_pred HH
Confidence 44
No 87
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=2.7 Score=52.86 Aligned_cols=32 Identities=22% Similarity=0.439 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 982 VREEFASQTSKLTEAYKTIKSLEDSLAQVEAN 1013 (1733)
Q Consensus 982 l~~el~~l~~klee~~~~ieeLee~l~kle~~ 1013 (1733)
++..+..+...+++..+.+..++..+..+...
T Consensus 444 Lq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~ 475 (581)
T KOG0995|consen 444 LQEHFSNKASTIEEKIQILGEIELELKKAESK 475 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 88
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.68 E-value=5.3 Score=55.23 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 000277 281 STYMLIEKYNQMLYEIYQLGQCLSKPD 307 (1733)
Q Consensus 281 g~~~~~Ek~~e~~~Eie~L~~~l~e~~ 307 (1733)
.+..+........++|..+...+....
T Consensus 269 ~~~~l~~e~~~l~~~~~~l~~~i~~~~ 295 (1294)
T KOG0962|consen 269 QVKLLDSEHKNLKKQISRLREKILKIF 295 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 566666777778888888777776444
No 89
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=3.9 Score=53.39 Aligned_cols=64 Identities=23% Similarity=0.227 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhhHHHHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 372 MKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAA 435 (1733)
Q Consensus 372 ~~~eL~ele~~l~~l~eki~~~~~k~~~l~~~~~~Lk~elee~~~ele~~~~ele~~~~~le~~ 435 (1733)
++.....+..++..+...+.....+..........+...++.+..++.........+..-+..+
T Consensus 60 Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~ 123 (698)
T KOG0978|consen 60 LQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEA 123 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333344555555566666655555555554444443
No 90
>PF13514 AAA_27: AAA domain
Probab=96.52 E-value=8.1 Score=55.25 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchHHHHHHHH
Q 000277 789 DLDCIRKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRIILPVNSVFKEPLEKVNWIA 850 (1733)
Q Consensus 789 ~le~l~~le~ei~~lk~e~eele~~l~e~e~~l~~l~~~i~el~~~~~~~~~~~~~ki~~l~ 850 (1733)
.+.++..+...+..+......+...+......+..+...+..+..+.+ ....|..-..|+.
T Consensus 548 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g-~p~~p~~~~~Wl~ 608 (1111)
T PF13514_consen 548 RAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAG-LPLSPAEMRDWLA 608 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCChHHHHHHHH
Confidence 444555666777777777777888888888888888888877766655 3334433333433
No 91
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.51 E-value=0.49 Score=50.24 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=34.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 939 EACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYK 998 (1733)
Q Consensus 939 El~~~~~~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~klee~~~ 998 (1733)
.+.+.+..+...+......+......+.+....-..+.+.+..+..+...|..+++.+..
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555666666666666666666655433
No 92
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.44 E-value=4.4 Score=51.37 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1038 QVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTE 1076 (1733)
Q Consensus 1038 ~lq~Ele~l~~~l~~~~~~i~~Le~el~~~~~~l~~l~~ 1076 (1733)
+++..+.....+......+...+..++.++...+..+..
T Consensus 715 ~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~ 753 (961)
T KOG4673|consen 715 QLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEV 753 (961)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444433333
No 93
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.35 E-value=2.1 Score=46.77 Aligned_cols=44 Identities=11% Similarity=0.186 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 850 ASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLED 893 (1733)
Q Consensus 850 ~~~i~~Le~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~ 893 (1733)
-..+..|+..-..+..+...+++.+..++..-..+..++..+..
T Consensus 7 ~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~ 50 (193)
T PF14662_consen 7 LSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRK 50 (193)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333333333333333
No 94
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.29 E-value=3.2 Score=48.24 Aligned_cols=105 Identities=12% Similarity=0.139 Sum_probs=47.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 000277 941 CASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKL-------TEAYKTIKSLEDSLAQVEAN 1013 (1733)
Q Consensus 941 ~~~~~~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~kl-------ee~~~~ieeLee~l~kle~~ 1013 (1733)
...+......+..++.++-..+..+.+..-....+++.+.....++..++..+ ......-+.+++.+..++..
T Consensus 150 sQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsE 229 (305)
T PF14915_consen 150 SQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSE 229 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444555555555555555443333 22333444444445544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1014 VAMLTEQNKEEAQASGAAAVLELEQVREEFVSQ 1046 (1733)
Q Consensus 1014 l~~l~ee~~ee~~~~~~~lE~el~~lq~Ele~l 1046 (1733)
-.-+..+ ++.++.+....++..-.++..+.+.
T Consensus 230 N~LLrQQ-LddA~~K~~~kek~ViniQ~~f~d~ 261 (305)
T PF14915_consen 230 NMLLRQQ-LDDAHNKADNKEKTVINIQDQFQDI 261 (305)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444 4444444444444444444444333
No 95
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.20 E-value=1.3 Score=50.52 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000277 861 TQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVE 920 (1733)
Q Consensus 861 ~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele~~i~~L~ke~~~le~~~~el~ 920 (1733)
..+...+......+..+...++.+...+..+..++..++.++.+++.++..+...+...+
T Consensus 20 ~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 20 DRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444455555555555555544444444333
No 96
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.18 E-value=2.6 Score=46.11 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1027 ASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLED 1062 (1733)
Q Consensus 1027 ~~~~~lE~el~~lq~Ele~l~~~l~~~~~~i~~Le~ 1062 (1733)
..+..++++...+-.++..+......+...+..+..
T Consensus 88 aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~ 123 (193)
T PF14662_consen 88 AQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKK 123 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 334444444444444444444333333333333333
No 97
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.18 E-value=4 Score=48.25 Aligned_cols=11 Identities=27% Similarity=0.446 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 000277 1138 DQEVSALNSKL 1148 (1733)
Q Consensus 1138 ~~Ei~~L~~~l 1148 (1733)
..++.+++.++
T Consensus 275 ~aEL~elqdkY 285 (306)
T PF04849_consen 275 QAELQELQDKY 285 (306)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 98
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.16 E-value=0.88 Score=48.36 Aligned_cols=12 Identities=8% Similarity=0.246 Sum_probs=4.4
Q ss_pred HHhHHHHHHHHH
Q 000277 1082 QVGKTTLENELQ 1093 (1733)
Q Consensus 1082 e~~l~elk~el~ 1093 (1733)
......|..++.
T Consensus 121 e~~~~~~E~k~e 132 (143)
T PF12718_consen 121 EQERDQWEEKYE 132 (143)
T ss_pred HhhHHHHHHHHH
Confidence 333333333333
No 99
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.15 E-value=4.2 Score=54.57 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 347 ENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRDSLKQSLADKTIELEKCLAELQ 426 (1733)
Q Consensus 347 E~~~L~~el~~~~~~i~~~~~el~~~~~eL~ele~~l~~l~eki~~~~~k~~~l~~~~~~Lk~elee~~~ele~~~~ele 426 (1733)
++..+..++..+...+..+..++..+..++.....++..+...+. ..+..+...+..+..++..+..++......+.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~---~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR---SEGGDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444445555555555555555544444 34667777777777777777777777777665
Q ss_pred HH
Q 000277 427 EK 428 (1733)
Q Consensus 427 ~~ 428 (1733)
.+
T Consensus 287 ~l 288 (650)
T TIGR03185 287 EL 288 (650)
T ss_pred HH
Confidence 43
No 100
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.01 E-value=7.7 Score=50.01 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 997 YKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTE 1076 (1733)
Q Consensus 997 ~~~ieeLee~l~kle~~l~~l~ee~~ee~~~~~~~lE~el~~lq~Ele~l~~~l~~~~~~i~~Le~el~~~~~~l~~l~~ 1076 (1733)
...++.+.+.+..+..+...+-.+ ...+...+........++..++.........+..-+..+.+..............
T Consensus 383 ~tklk~l~etl~~~~~~~~~~~tq-~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~ 461 (716)
T KOG4593|consen 383 ETKLKELHETLARRLQKRALLLTQ-ERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYR 461 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHH
Confidence 344445555544444444443333 3333333333333444555555444444433333333333333333333444444
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1077 QNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISD 1138 (1733)
Q Consensus 1077 e~~~~e~~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~Le~e~k~l~ 1138 (1733)
++.........+...+..+...+......+.-...+...+...+......+..|+.++..+.
T Consensus 462 ~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr 523 (716)
T KOG4593|consen 462 EITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLR 523 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554444444433333333333344555555555555554443
No 101
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.82 E-value=6.3 Score=47.51 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1084 GKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNA 1150 (1733)
Q Consensus 1084 ~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~k 1150 (1733)
.-..++..+.-+.+..+.++..+..++.-....+.+++.+...+..|+.++..+..........+-.
T Consensus 210 ~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~ 276 (309)
T PF09728_consen 210 TEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIE 276 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3333444444444444444444555555455555555555555555555555544444443333333
No 102
>PRK09039 hypothetical protein; Validated
Probab=95.77 E-value=1.7 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1126 DISVLEGEKRISDQEVSALNSKLN 1149 (1733)
Q Consensus 1126 ~le~Le~e~k~l~~Ei~~L~~~l~ 1149 (1733)
.+...+...+..+..+.++...++
T Consensus 159 ~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 159 ALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344333333
No 103
>PF13514 AAA_27: AAA domain
Probab=95.65 E-value=19 Score=51.69 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 000277 441 EFIKTENLVASLQETLQQSNLMLEKSEEVLA 471 (1733)
Q Consensus 441 el~~~k~~~~~L~~~~~ek~~~l~~~e~~l~ 471 (1733)
...........++..+......+..+...+.
T Consensus 297 ~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 297 EYRKARQDLPRLEAELAELEAELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333444445555555555545555544444
No 104
>PRK09039 hypothetical protein; Validated
Probab=95.51 E-value=2.6 Score=51.71 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 960 VLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQ 1020 (1733)
Q Consensus 960 ~L~e~lee~q~~k~~le~eL~kl~~el~~l~~klee~~~~ieeLee~l~kle~~l~~l~ee 1020 (1733)
.+...+........+...++..++.++..++.++..+...+...+......+.++..+...
T Consensus 120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~ 180 (343)
T PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR 180 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555555555555555555555555555555555555555544
No 105
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.32 E-value=13 Score=47.62 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000277 883 ETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNV 919 (1733)
Q Consensus 883 ~l~~e~e~le~eLeele~~i~~L~ke~~~le~~~~el 919 (1733)
.+......+..++..++..|..+...+.....++..+
T Consensus 186 ~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~ 222 (629)
T KOG0963|consen 186 GLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDL 222 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3444455555556666666665555554444444333
No 106
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.32 E-value=6.5 Score=44.31 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 950 EMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTE 1019 (1733)
Q Consensus 950 ~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~klee~~~~ieeLee~l~kle~~l~~l~e 1019 (1733)
.+..+..+.+.+...+.....+...+.....+...-+..++...+.+...+......+....++...+..
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~ 139 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKA 139 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555666666666666666666666666666666666666666666555443
No 107
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.22 E-value=18 Score=48.71 Aligned_cols=62 Identities=27% Similarity=0.398 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000277 865 QELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKA 926 (1733)
Q Consensus 865 ~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele~~i~~L~ke~~~le~~~~el~~eLe~~ 926 (1733)
.++..+......+...+..+...+..+..+|.+.+..+..++.++..+......+..++...
T Consensus 596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~ 657 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAM 657 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555555555555555555544444333344444333
No 108
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.09 E-value=5 Score=42.24 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 857 HDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKIT 903 (1733)
Q Consensus 857 e~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele~~i~ 903 (1733)
+...+.++..+..+.+.+...+.....+..........+..+...+.
T Consensus 16 ~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~ 62 (140)
T PF10473_consen 16 ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELE 62 (140)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344433333333333333333333333333333
No 109
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.08 E-value=21 Score=48.90 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 983 REEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLED 1062 (1733)
Q Consensus 983 ~~el~~l~~klee~~~~ieeLee~l~kle~~l~~l~ee~~ee~~~~~~~lE~el~~lq~Ele~l~~~l~~~~~~i~~Le~ 1062 (1733)
..++..+...+.+.......++.....+...+.-+... +-..+.+...+.........++..++..+......-..+..
T Consensus 699 e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d-~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~ 777 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSND-YKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQR 777 (1317)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhh-hhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 33344444444433333334444444444444444433 22222233334444444444444444444443333333333
Q ss_pred HHH
Q 000277 1063 ALS 1065 (1733)
Q Consensus 1063 el~ 1065 (1733)
.+.
T Consensus 778 eLs 780 (1317)
T KOG0612|consen 778 ELK 780 (1317)
T ss_pred Hhh
Confidence 333
No 110
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.95 E-value=5 Score=42.26 Aligned_cols=90 Identities=21% Similarity=0.250 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000277 1054 YTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGE 1133 (1733)
Q Consensus 1054 ~~~i~~Le~el~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~Le~e 1133 (1733)
...|-.|+.++.........+.....+....+..++.++..+..++..+..++..+..+...+...+...+..+..|+..
T Consensus 23 e~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 23 EDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555666666666666666666666666666666666666666666666666655
Q ss_pred HHHHHHHHHH
Q 000277 1134 KRISDQEVSA 1143 (1733)
Q Consensus 1134 ~k~l~~Ei~~ 1143 (1733)
+..+..-+..
T Consensus 103 ~~~~~~~l~~ 112 (140)
T PF10473_consen 103 NSSLENLLQE 112 (140)
T ss_pred hHHHHHHHHH
Confidence 5554444433
No 111
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.94 E-value=17 Score=47.07 Aligned_cols=8 Identities=25% Similarity=0.376 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 000277 979 LEQVREEF 986 (1733)
Q Consensus 979 L~kl~~el 986 (1733)
++.++.++
T Consensus 446 letLn~k~ 453 (1118)
T KOG1029|consen 446 LETLNFKL 453 (1118)
T ss_pred HHHHHHHH
Confidence 33333333
No 112
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.91 E-value=8.5 Score=43.43 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000277 1062 DALSQVEANVAVLTEQNNVLQVGKTTLENELQMLK 1096 (1733)
Q Consensus 1062 ~el~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~ 1096 (1733)
.-+..+...-..+...+......+..+.+.+..+.
T Consensus 104 ~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK 138 (207)
T PF05010_consen 104 EVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALK 138 (207)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333433333444444444444444444444443
No 113
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.81 E-value=17 Score=46.48 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHhhhHhhHHhHHHHHHHHHHHHHHHHh
Q 000277 1134 KRISDQEVSALNSKLNACRD---ELAGTIGSLESRSVELIGHLNDLQMHMK 1181 (1733)
Q Consensus 1134 ~k~l~~Ei~~L~~~l~kl~~---Ele~~~~~le~~~~el~~~leele~~lk 1181 (1733)
++.++.+...|+.....+.. ++......+.....+.+..+..++..|.
T Consensus 385 nr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~ 435 (629)
T KOG0963|consen 385 NRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLL 435 (629)
T ss_pred HhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHh
Confidence 44445555554444332222 2233333455555555555566666653
No 114
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.66 E-value=13 Score=44.41 Aligned_cols=6 Identities=50% Similarity=0.634 Sum_probs=2.1
Q ss_pred HHHHHH
Q 000277 1137 SDQEVS 1142 (1733)
Q Consensus 1137 l~~Ei~ 1142 (1733)
++.+..
T Consensus 271 leqeva 276 (499)
T COG4372 271 LEQEVA 276 (499)
T ss_pred HHHHHH
Confidence 333333
No 115
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.57 E-value=25 Score=47.34 Aligned_cols=130 Identities=8% Similarity=0.010 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCchhhhhh-------
Q 000277 1297 TRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLLSACIDATRELQFEVKNNLLELNSVPELEN------- 1369 (1733)
Q Consensus 1297 ~e~e~~~~~e~~e~L~~ql~~le~~k~~LE~~i~~Le~el~e~~~~~~~~~~e~~~e~~~~ll~~~e~~eLes------- 1369 (1733)
+.++|......+..|...+.........+...+..+......-+..+-..+++.|+.||+.+-.+|++..-..
T Consensus 861 ~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~F~~mg~aGeV~L~~~~~Dydkw 940 (1072)
T KOG0979|consen 861 AVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERFSQLFSSMGCAGEVSLEVNPLDYDKW 940 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEeccCcccHhHh
Confidence 3445555555555555554444444444444444444444445555566777888888888666666552211
Q ss_pred hhhhccCCCCccccccccchhcccCcccHHHHHHHHHHHHHhhCChhhhhhhhhccchhhhHHHHhhhc
Q 000277 1370 LNRGFSQPESKVDGDDTTDHQKSLHGNRYHEAAENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQ 1438 (1733)
Q Consensus 1370 l~~~l~~~~~kle~~i~~l~~~~~~~~~~~~~a~~L~~el~~e~~~~~~le~~k~~le~~ikeLq~rLd 1438 (1733)
++.+++. -+-..-+..|--..-+||+..-...--+-+|....+ .||+.|+|+..-.|
T Consensus 941 gI~ImVk--FR~s~~L~~L~sh~QSGGERSVSTiLYLlALQ~l~~----------~PFRvVDEINQGMD 997 (1072)
T KOG0979|consen 941 GIMIMVK--FRDSEGLKVLDSHRQSGGERSVSTILYLLALQELTP----------APFRVVDEINQGMD 997 (1072)
T ss_pred ceEEEEE--EccCcccccccccccCCcchHHHHHHHHHHHhhccC----------CCeeehhhhhcCCC
Confidence 1222211 111111111100112788776654444445666666 99999999976554
No 116
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.38 E-value=15 Score=43.94 Aligned_cols=38 Identities=8% Similarity=0.138 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000277 1085 KTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLK 1122 (1733)
Q Consensus 1085 l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee 1122 (1733)
+......+..-.+.+......+..+.+...-+......
T Consensus 240 i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~ 277 (499)
T COG4372 240 ISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQ 277 (499)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444443333
No 117
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.23 E-value=12 Score=42.07 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1039 VREEFVSQTSKLTEAYTTIKSLED 1062 (1733)
Q Consensus 1039 lq~Ele~l~~~l~~~~~~i~~Le~ 1062 (1733)
+...+..+...+......+..|+.
T Consensus 123 L~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 123 LQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 118
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=93.94 E-value=24 Score=44.52 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1029 GAAAVLELEQVREEFVSQTSKLTEAYTTIKSLED 1062 (1733)
Q Consensus 1029 ~~~lE~el~~lq~Ele~l~~~l~~~~~~i~~Le~ 1062 (1733)
++.+...+..+...+.+...........+.+|++
T Consensus 377 yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lrk 410 (570)
T COG4477 377 YSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRK 410 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333333333333344444333333333444443
No 119
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.67 E-value=34 Score=45.46 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1023 EEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANV 1071 (1733)
Q Consensus 1023 ee~~~~~~~lE~el~~lq~Ele~l~~~l~~~~~~i~~Le~el~~~~~~l 1071 (1733)
+....++..+......+...+.+...+++.....+..++.....+...+
T Consensus 427 ~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~l 475 (980)
T KOG0980|consen 427 EKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQL 475 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333444444444444445555555444444444443333333333333
No 120
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.61 E-value=35 Score=45.38 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 000277 894 ALSVAEDKITQL 905 (1733)
Q Consensus 894 eLeele~~i~~L 905 (1733)
.+..+...+..+
T Consensus 334 ~~~~~~~e~~~~ 345 (980)
T KOG0980|consen 334 QIEQLSREVAQL 345 (980)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 121
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.57 E-value=37 Score=45.65 Aligned_cols=76 Identities=26% Similarity=0.428 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 691 QLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNL 769 (1733)
Q Consensus 691 ~~~~l~~~l~~L~~el~~l~~el~~l~~el~~~e~k~~~lre~l~~~~~k~k~l~~el~~l~~~ieel~~eie~lk~ei 769 (1733)
++..+..++..+..+...+..+...++..++.++.++..++..+... +-.+..++..++.++..+..++......+
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~---GG~~~~~r~~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSE---GGDLFEEREQLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444433221 12222333444444444444444433333
No 122
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.54 E-value=19 Score=42.02 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 950 EMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEA 996 (1733)
Q Consensus 950 ~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~klee~ 996 (1733)
....++.+++.|..++++.+.....+..++.+.+.++..+..++..+
T Consensus 46 ~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 46 EKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444333333333334444444444444333333
No 123
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.36 E-value=26 Score=43.11 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 965 KEEAQASGAAAVVELEQVREEFASQTSKL 993 (1733)
Q Consensus 965 lee~q~~k~~le~eL~kl~~el~~l~~kl 993 (1733)
.+....++..+-++|.+++.+...+.+.+
T Consensus 370 fe~mn~Ere~L~reL~~i~~~~~~L~k~V 398 (622)
T COG5185 370 FELMNQEREKLTRELDKINIQSDKLTKSV 398 (622)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34445556666667777666666665544
No 124
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.24 E-value=17 Score=40.76 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 958 MSVLICEKEEAQASGAAAVVELEQ 981 (1733)
Q Consensus 958 l~~L~e~lee~q~~k~~le~eL~k 981 (1733)
+..++..+...+.....+.+.+.+
T Consensus 70 vr~Lr~~LR~~q~~~r~~~~klk~ 93 (194)
T PF15619_consen 70 VRVLRERLRKSQEQERELERKLKD 93 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 125
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.45 E-value=34 Score=42.12 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhcc
Q 000277 635 IISKCIGKIREQTC 648 (1733)
Q Consensus 635 ~a~~~i~~LK~~~~ 648 (1733)
++....+||+.+|.
T Consensus 109 c~~~I~~yL~engf 122 (622)
T COG5185 109 CQEEIYDYLKENGF 122 (622)
T ss_pred HHHHHHHHHHHcCC
Confidence 44555777777753
No 126
>PRK11281 hypothetical protein; Provisional
Probab=91.89 E-value=76 Score=44.94 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 849 IASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAE 899 (1733)
Q Consensus 849 l~~~i~~Le~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele 899 (1733)
+.+.+.+++..+...+..+.....++..+....++.+..+......+.+..
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~ 176 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIR 176 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444333333333333
No 127
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.65 E-value=83 Score=44.93 Aligned_cols=67 Identities=13% Similarity=0.038 Sum_probs=50.1
Q ss_pred hHhHHHHHHHHHHhhhh--hhhcccccc-----cCcc-------ccccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 000277 241 EKDQYVEVVADRMLSYL--AMVVYQGEL-----MDSS-------ISGKISHVEQSTYMLIEKYNQMLYEIYQLGQCLSKP 306 (1733)
Q Consensus 241 ~~~~~~e~~~~r~l~~~--~nvVlQGdv-----m~~~-------~~~~i~~lE~g~~~~~Ek~~e~~~Eie~L~~~l~e~ 306 (1733)
..+..|...+|..++.| ..+++||+| ++|. .+.|+..|..-...+.++...+...++.+...+..+
T Consensus 127 ~~~~~i~~llGld~~~F~~~~~l~Qg~~~~fl~a~~~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (1042)
T TIGR00618 127 ETEEVIHDLLKLDYKTFTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLL 206 (1042)
T ss_pred HHHHHHHHHhCCCHHHHhhheeecccchHHHHhCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46777888888888888 667899999 3454 555666666666666677788888888888888766
Q ss_pred C
Q 000277 307 D 307 (1733)
Q Consensus 307 ~ 307 (1733)
.
T Consensus 207 ~ 207 (1042)
T TIGR00618 207 T 207 (1042)
T ss_pred c
Confidence 5
No 128
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.53 E-value=56 Score=42.68 Aligned_cols=83 Identities=6% Similarity=0.093 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 795 KMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRIILPVNSVFKEPLEKVNWIASYINECHDTKTQLEQELGNVKQEA 874 (1733)
Q Consensus 795 ~le~ei~~lk~e~eele~~l~e~e~~l~~l~~~i~el~~~~~~~~~~~~~ki~~l~~~i~~Le~~l~ele~ei~~l~~~l 874 (1733)
..+.+-..|+..+......+..-..-+..+..+|.+...+ +.....+.-....+...+..|+.....+....+-+.-.+
T Consensus 194 ~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~-~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRv 272 (739)
T PF07111_consen 194 EAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPP-EVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRV 272 (739)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666566666655556677777777665432 111111222234455555556555555555555555555
Q ss_pred HHHH
Q 000277 875 SALA 878 (1733)
Q Consensus 875 ~ele 878 (1733)
+.++
T Consensus 273 qSLt 276 (739)
T PF07111_consen 273 QSLT 276 (739)
T ss_pred HHHH
Confidence 5544
No 129
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.34 E-value=38 Score=40.33 Aligned_cols=93 Identities=12% Similarity=0.102 Sum_probs=42.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 945 KSLEDEMSVAKNNMSVLICEKEEAQAS-GAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQNKE 1023 (1733)
Q Consensus 945 ~~L~~~l~~le~el~~L~e~lee~q~~-k~~le~eL~kl~~el~~l~~klee~~~~ieeLee~l~kle~~l~~l~ee~~e 1023 (1733)
+.|...+..+..+...+...++..+.. ...+...|..+..+.......+..+.. .+-.++..+..-++-++.
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~-------EKVdlEn~LE~EQE~lvN 181 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRR-------EKVDLENTLEQEQEALVN 181 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHhHHHHHHHHHHHHHH
Confidence 445555555555555555555544433 244444454444443333333333222 222223333222222345
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000277 1024 EAQASGAAAVLELEQVREEFV 1044 (1733)
Q Consensus 1024 e~~~~~~~lE~el~~lq~Ele 1044 (1733)
.++.....+..++..++..++
T Consensus 182 ~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 182 RLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 555556666666666666554
No 130
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.08 E-value=40 Score=40.18 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000277 1047 TSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKND 1126 (1733)
Q Consensus 1047 ~~~l~~~~~~i~~Le~el~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~ 1126 (1733)
..++..++..|..|...+..-......-+.++..+-.++.++..++..+..+-+.+..-+......-..|..++.++++.
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333333333333333333333333333333333333333333332223333333333333
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000277 1127 ISVLEGEKRISDQEVSA 1143 (1733)
Q Consensus 1127 le~Le~e~k~l~~Ei~~ 1143 (1733)
..+........+.+++.
T Consensus 285 Y~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 285 YAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333444333
No 131
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=90.82 E-value=31 Score=38.54 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 000277 1035 ELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAH---T 1111 (1733)
Q Consensus 1035 el~~lq~Ele~l~~~l~~~~~~i~~Le~el~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~~El~~~~~el~~~~---~ 1111 (1733)
++-.++..+.+....+......+..+...+..-...+..+..++........-+..++..+..++..+...+.... .
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~ 111 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKR 111 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchh
Confidence 3333444444444444444444444444444444444455555544444444444444444444443333333320 0
Q ss_pred hHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHhHHHHHHHHHHHHHHH
Q 000277 1112 TIKSME--D----ALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGTIGSLESRSVELIGHLNDLQMH 1179 (1733)
Q Consensus 1112 el~~L~--~----~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~kl~~Ele~~~~~le~~~~el~~~leele~~ 1179 (1733)
....+. + .-......+..|..+...+..++...+.+.+.....++.-.......+..+..|-..|+..
T Consensus 112 ~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~n 185 (202)
T PF06818_consen 112 QCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQN 185 (202)
T ss_pred hhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 0000122345555666666666666666555555555555555666666677777777654
No 132
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.03 E-value=74 Score=41.58 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=13.3
Q ss_pred ccccccccccccccccccchhhh
Q 000277 1232 FMDDIDNIEMYDNEVTVLDADDI 1254 (1733)
Q Consensus 1232 le~dlN~iEl~~~~~~~~~~D~i 1254 (1733)
|+...+.|-+-.++|..+..+.|
T Consensus 666 ~e~eS~s~~ll~n~~~~~~d~li 688 (716)
T KOG4593|consen 666 FENESGSLQLLENPYSHTFDPLI 688 (716)
T ss_pred hcCccchhHhhcCCcccccchHh
Confidence 34444454555666766666665
No 133
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.38 E-value=38 Score=39.06 Aligned_cols=24 Identities=13% Similarity=0.368 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHh
Q 000277 1189 VKSCFERKIEGLQNMELIVEDIRI 1212 (1733)
Q Consensus 1189 ik~e~er~l~~lr~~~~~iedL~~ 1212 (1733)
++..|.++..+++.+...+.-|++
T Consensus 167 L~ekynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 167 LQEKYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhc
Confidence 445677777777777777776665
No 134
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.11 E-value=24 Score=40.53 Aligned_cols=15 Identities=0% Similarity=0.005 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 000277 1029 GAAAVLELEQVREEF 1043 (1733)
Q Consensus 1029 ~~~lE~el~~lq~El 1043 (1733)
|..+++...++..++
T Consensus 76 c~~lek~rqKlshdl 90 (307)
T PF10481_consen 76 CENLEKTRQKLSHDL 90 (307)
T ss_pred HHHHHHHHHHhhHHH
Confidence 344444444444433
No 135
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.06 E-value=55 Score=38.73 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 848 WIASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSL 891 (1733)
Q Consensus 848 ~l~~~i~~Le~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~l 891 (1733)
.+...+..+...+.............+..+...+..+...+..+
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L 64 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENL 64 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433333333333333
No 136
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.75 E-value=34 Score=35.94 Aligned_cols=88 Identities=20% Similarity=0.273 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 695 LSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQEQES 774 (1733)
Q Consensus 695 l~~~l~~L~~el~~l~~el~~l~~el~~~e~k~~~lre~l~~~~~k~k~l~~el~~l~~~ieel~~eie~lk~ei~~~e~ 774 (1733)
+..++..+.............++.++............+.....-.+......+..++..+..+...+..++...+....
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~ 87 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKA 87 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444333333333444555555555555555555555555544
Q ss_pred HHHHHHHH
Q 000277 775 TISECRDQ 782 (1733)
Q Consensus 775 el~~le~e 782 (1733)
.+...+..
T Consensus 88 ~l~~~e~s 95 (132)
T PF07926_consen 88 ELEESEAS 95 (132)
T ss_pred HHHHHHHh
Confidence 44444433
No 137
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.40 E-value=66 Score=38.79 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 956 NNMSVLICEKEEAQASGAAAVVELEQVREEFA 987 (1733)
Q Consensus 956 ~el~~L~e~lee~q~~k~~le~eL~kl~~el~ 987 (1733)
.++..+..+.+++...+.........++.++.
T Consensus 147 ~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn 178 (319)
T PF09789_consen 147 RDLQSLLDEKEELVTERDAYKCKAHRLNHELN 178 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334433344444444444444443
No 138
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.36 E-value=3.1 Score=46.74 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1074 LTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKR 1135 (1733)
Q Consensus 1074 l~~e~~~~e~~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~Le~e~k 1135 (1733)
....+..+...+..+..++..+..++....+.+..+..++..+.-++..+...+..++.+|.
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444443333333333333333333333333333333333333
No 139
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.70 E-value=55 Score=37.07 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000277 1071 VAVLTEQNNVLQVGKTTLENELQMLKDEA 1099 (1733)
Q Consensus 1071 l~~l~~e~~~~e~~l~elk~el~~l~~El 1099 (1733)
+..++.++..+.-....+...+..+..+.
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444443
No 140
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=86.64 E-value=1.4e+02 Score=40.60 Aligned_cols=71 Identities=24% Similarity=0.320 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 923 LEKAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKL 993 (1733)
Q Consensus 923 Le~~~~el~~l~~~leEl~~~~~~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~kl 993 (1733)
++.+..+...+...+......+..+...+...+..+..++.++.........+..++.........+..++
T Consensus 598 lE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~ 668 (769)
T PF05911_consen 598 LEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRL 668 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333333333334444444444444444555555555555555444444444444444433333333333
No 141
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.11 E-value=81 Score=40.97 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 846 VNWIASYINECHDTKTQLEQELGNV 870 (1733)
Q Consensus 846 i~~l~~~i~~Le~~l~ele~ei~~l 870 (1733)
..++..++..++.++...+..+..+
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 142
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.54 E-value=18 Score=37.28 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 749 ENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRL 786 (1733)
Q Consensus 749 ~~l~~~ieel~~eie~lk~ei~~~e~el~~le~el~~L 786 (1733)
+.+...|..++.++..++..+..+...-..+..++-.+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333333
No 143
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=83.81 E-value=1.1e+02 Score=42.03 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 847 NWIASYINECHDTKTQLEQELGNV 870 (1733)
Q Consensus 847 ~~l~~~i~~Le~~l~ele~ei~~l 870 (1733)
.|+...+..+..++...+.++...
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 144
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=83.22 E-value=32 Score=42.46 Aligned_cols=107 Identities=12% Similarity=0.162 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 985 EFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDAL 1064 (1733)
Q Consensus 985 el~~l~~klee~~~~ieeLee~l~kle~~l~~l~ee~~ee~~~~~~~lE~el~~lq~Ele~l~~~l~~~~~~i~~Le~el 1064 (1733)
...+|+..++....-...+..........+..+... +...-.++.+.| ..++.++..+-.+.
T Consensus 214 d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~-i~~~lekI~sRE-----------------k~iN~qle~l~~eY 275 (359)
T PF10498_consen 214 DAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQD-ISKTLEKIESRE-----------------KYINNQLEPLIQEY 275 (359)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHH-----------------HHHHHHhHHHHHHH
Confidence 346788888776555555555554444444444433 111111111111 11223333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1065 SQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADA 1109 (1733)
Q Consensus 1065 ~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~~El~~~~~el~~~ 1109 (1733)
......++..+.+.+.....+.+....+..+..+++..+.++.+.
T Consensus 276 r~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 276 RSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555555555555555555555555555555555443
No 145
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.13 E-value=1.2e+02 Score=36.86 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=23.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 000277 1105 KLADAHTTIKSMEDALLKAKNDISVLEGEKRIS----DQEVSALNSKLNAC 1151 (1733)
Q Consensus 1105 el~~~~~el~~L~~~Lee~~~~le~Le~e~k~l----~~Ei~~L~~~l~kl 1151 (1733)
++..+...+........+....+.++++..... ..++..|..++..+
T Consensus 233 ~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~L 283 (312)
T smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 344444444444444555555555555544333 55666666655543
No 146
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.72 E-value=63 Score=33.41 Aligned_cols=9 Identities=22% Similarity=0.553 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 000277 980 EQVREEFAS 988 (1733)
Q Consensus 980 ~kl~~el~~ 988 (1733)
..++.++.+
T Consensus 99 eEL~~Dv~D 107 (120)
T PF12325_consen 99 EELRADVQD 107 (120)
T ss_pred HHHHHHHHH
Confidence 333333333
No 147
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.44 E-value=85 Score=34.72 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 000277 1127 ISVLEGEKR 1135 (1733)
Q Consensus 1127 le~Le~e~k 1135 (1733)
+..+...++
T Consensus 154 ~~~l~~~i~ 162 (177)
T PF13870_consen 154 VEELRKEIK 162 (177)
T ss_pred HHHHHHHHH
Confidence 333333333
No 148
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.12 E-value=77 Score=34.03 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=27.6
Q ss_pred HHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 662 QTMQSLLYVSYQELILCQQILEEDALVRLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKS 727 (1733)
Q Consensus 662 ~~l~d~l~~l~~E~~~l~~~le~~~~l~~~~~~l~~~l~~L~~el~~l~~el~~l~~el~~~e~k~ 727 (1733)
..+.+.|...+.+......+......+..++..+...+..+...++.++.++...+.....+..++
T Consensus 38 n~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 38 NCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333334444444444444444444444444444444333333333
No 149
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.52 E-value=64 Score=39.92 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1114 KSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNA 1150 (1733)
Q Consensus 1114 ~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~k 1150 (1733)
..+...+.....++..+...++.+..+..-...++.+
T Consensus 385 ~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~ 421 (493)
T KOG0804|consen 385 QQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKE 421 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333333333333444444444444443333333333
No 150
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.50 E-value=1.2e+02 Score=35.68 Aligned_cols=56 Identities=14% Similarity=0.338 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 852 YINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLAD 907 (1733)
Q Consensus 852 ~i~~Le~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele~~i~~L~k 907 (1733)
.+..+...+..++.+++.+..++.++......++.++.....++..+...|..+..
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444433333
No 151
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=81.12 E-value=1.8e+02 Score=37.52 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 936 KFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVEL 979 (1733)
Q Consensus 936 ~leEl~~~~~~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL 979 (1733)
.+.++..........+....+++..|+++..+.......+.+.+
T Consensus 218 kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~l 261 (861)
T KOG1899|consen 218 KVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTL 261 (861)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHH
Confidence 34555556666666677777778888887777665555554433
No 152
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=80.43 E-value=1.8e+02 Score=40.07 Aligned_cols=8 Identities=13% Similarity=-0.155 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 000277 1402 AENLLFSA 1409 (1733)
Q Consensus 1402 a~~L~~el 1409 (1733)
|..|+..+
T Consensus 564 a~nLA~~l 571 (754)
T TIGR01005 564 EANAAALI 571 (754)
T ss_pred HHHHHHHH
Confidence 33344333
No 153
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.66 E-value=27 Score=39.31 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 000277 894 ALSVAEDKITQLADEK 909 (1733)
Q Consensus 894 eLeele~~i~~L~ke~ 909 (1733)
.+......|..+..+.
T Consensus 110 ~~~~~~~~l~~l~~~~ 125 (194)
T PF08614_consen 110 ELSEKERRLAELEAEL 125 (194)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 154
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=79.61 E-value=1.1e+02 Score=35.69 Aligned_cols=77 Identities=27% Similarity=0.348 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000277 1037 EQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTI 1113 (1733)
Q Consensus 1037 ~~lq~Ele~l~~~l~~~~~~i~~Le~el~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~~El~~~~~el~~~~~el 1113 (1733)
..++.+.......+......+..|...+.........|..+...+...+..+.........+...+..++......+
T Consensus 15 ~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i 91 (246)
T PF00769_consen 15 RQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEI 91 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444455555555544444445555544444444444444444444333333343333333
No 155
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=79.36 E-value=1.5e+02 Score=35.55 Aligned_cols=21 Identities=43% Similarity=0.426 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000277 1130 LEGEKRISDQEVSALNSKLNA 1150 (1733)
Q Consensus 1130 Le~e~k~l~~Ei~~L~~~l~k 1150 (1733)
+...+..+..++..|+.++..
T Consensus 227 ~~shI~~Lr~EV~RLR~qL~~ 247 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQLAA 247 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 156
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.97 E-value=2.5e+02 Score=38.17 Aligned_cols=13 Identities=0% Similarity=0.141 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 000277 973 AAAVVELEQVREE 985 (1733)
Q Consensus 973 ~~le~eL~kl~~e 985 (1733)
..++..+..+..+
T Consensus 561 ~ei~~rv~~Lk~~ 573 (717)
T PF10168_consen 561 EEIQRRVKLLKQQ 573 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 157
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=78.66 E-value=70 Score=39.51 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHhhc
Q 000277 633 TAIISKCIGKIREQT 647 (1733)
Q Consensus 633 ~~~a~~~i~~LK~~~ 647 (1733)
..+++..+..||..|
T Consensus 70 n~~~~~Il~~lr~~g 84 (359)
T PF10498_consen 70 NATISNILDELRKLG 84 (359)
T ss_pred HHHHHHHHHHHHccC
Confidence 345555566666654
No 158
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=77.57 E-value=1.3e+02 Score=34.03 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1002 SLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSK 1049 (1733)
Q Consensus 1002 eLee~l~kle~~l~~l~ee~~ee~~~~~~~lE~el~~lq~Ele~l~~~ 1049 (1733)
.+...+..++..+..+.-+ .+.+..++..++.+...+...+.....+
T Consensus 90 ~~k~rl~~~ek~l~~Lk~e-~evL~qr~~kle~ErdeL~~kf~~~i~e 136 (201)
T PF13851_consen 90 NLKARLKELEKELKDLKWE-HEVLEQRFEKLEQERDELYRKFESAIQE 136 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444 4455555666666666665555544433
No 159
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=77.15 E-value=2.4e+02 Score=36.82 Aligned_cols=40 Identities=15% Similarity=0.366 Sum_probs=20.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1109 AHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKL 1148 (1733)
Q Consensus 1109 ~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l 1148 (1733)
+...+..+.+.|-.-+..++.+..++..+.-.+..+..++
T Consensus 390 lE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l 429 (511)
T PF09787_consen 390 LESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQL 429 (511)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHH
Confidence 3344444555555555555555555555544444444433
No 160
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.63 E-value=2.2e+02 Score=36.13 Aligned_cols=37 Identities=27% Similarity=0.514 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 746 QDRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQ 782 (1733)
Q Consensus 746 ~el~~l~~~ieel~~eie~lk~ei~~~e~el~~le~e 782 (1733)
.+...++..+++++.+++.+..+++.....+..+...
T Consensus 43 eeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~ 79 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQ 79 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888888888888888877777776644
No 161
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=76.41 E-value=3.7e+02 Score=38.54 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhHHHHHH
Q 000277 1074 LTEQNNVLQVGKTTLEN 1090 (1733)
Q Consensus 1074 l~~e~~~~e~~l~elk~ 1090 (1733)
+...+..++..+.....
T Consensus 782 l~~~i~~~~~~~~~~~~ 798 (1047)
T PRK10246 782 LEQLKQNLENQRQQAQT 798 (1047)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444433333333
No 162
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=76.16 E-value=3.2e+02 Score=37.66 Aligned_cols=40 Identities=33% Similarity=0.317 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000277 701 VASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKK 740 (1733)
Q Consensus 701 ~L~~el~~l~~el~~l~~el~~~e~k~~~lre~l~~~~~k 740 (1733)
...+.+..+..+++..+.+++.++.+....+..++....+
T Consensus 633 ~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~ 672 (1072)
T KOG0979|consen 633 RIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKK 672 (1072)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666666666666655555555544443
No 163
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=73.70 E-value=1.7e+02 Score=33.42 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 412 ADKTIELEKCLAELQEKSSALQAAELSKEEFIKTE 446 (1733)
Q Consensus 412 ee~~~ele~~~~ele~~~~~le~~e~l~~el~~~k 446 (1733)
+.....+..+...+..+++++.+-+.+.+....++
T Consensus 136 eDfeqrLnqAIErnAfLESELdEke~llesvqRLk 170 (333)
T KOG1853|consen 136 EDFEQRLNQAIERNAFLESELDEKEVLLESVQRLK 170 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444444444444444444443333333333
No 164
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.81 E-value=3.6e+02 Score=36.74 Aligned_cols=14 Identities=7% Similarity=0.040 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 000277 1070 NVAVLTEQNNVLQV 1083 (1733)
Q Consensus 1070 ~l~~l~~e~~~~e~ 1083 (1733)
+++.+...++.+.+
T Consensus 601 R~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 601 RYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 165
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.72 E-value=3.5e+02 Score=36.61 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=43.7
Q ss_pred HHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 661 LQTMQSLLYVSYQELILCQQILEEDALVRLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMA 737 (1733)
Q Consensus 661 ~~~l~d~l~~l~~E~~~l~~~le~~~~l~~~~~~l~~~l~~L~~el~~l~~el~~l~~el~~~e~k~~~lre~l~~~ 737 (1733)
..+|.|+|+-++.= +........++.+++.....++..+.+....|..+++..+..+.++++++..+
T Consensus 377 N~rLKdalVrLRDl----------sA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 377 NARLKDALVRLRDL----------SASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred HHHHHHHHHHHHhc----------chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666555432 12233445556667777777777777777778888888888888887777544
No 166
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=71.59 E-value=3.4e+02 Score=35.95 Aligned_cols=13 Identities=23% Similarity=0.163 Sum_probs=6.3
Q ss_pred ccccccccccccc
Q 000277 1236 IDNIEMYDNEVTV 1248 (1733)
Q Consensus 1236 lN~iEl~~~~~~~ 1248 (1733)
+..++.+..+..|
T Consensus 419 ~d~v~f~~~~n~g 431 (563)
T TIGR00634 419 ADQVEFLFSANTG 431 (563)
T ss_pred ceEEEEEEecCCC
Confidence 4455555544433
No 167
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=71.57 E-value=1.4e+02 Score=34.49 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=28.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1083 VGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKL 1148 (1733)
Q Consensus 1083 ~~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l 1148 (1733)
..|.++..++..|..|......+++.....+..|..-+..+.............+..++..|...+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~i 97 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEI 97 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544444444444444444444433333333333333333333333333333
No 168
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=71.39 E-value=3e+02 Score=35.26 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000277 751 LKLQLDEKNSEIEKLKLNLQE 771 (1733)
Q Consensus 751 l~~~ieel~~eie~lk~ei~~ 771 (1733)
+-..++.+..+++.+...++.
T Consensus 162 ~Ge~~~~lEk~Le~i~~~l~q 182 (570)
T COG4477 162 YGEAAPELEKKLENIEEELSQ 182 (570)
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 169
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=71.12 E-value=3.5e+02 Score=35.87 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHhHHHH
Q 000277 1138 DQEVSALNSKLNACRDELAGTIGSLESRSVE 1168 (1733)
Q Consensus 1138 ~~Ei~~L~~~l~kl~~Ele~~~~~le~~~~e 1168 (1733)
...+.+...+++....+..++.-.|.+....
T Consensus 588 ~E~L~~~E~rLNeARREHtKaVVsLRQ~qrq 618 (739)
T PF07111_consen 588 REQLSEMEKRLNEARREHTKAVVSLRQIQRQ 618 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666665555555554333
No 170
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.90 E-value=1.5e+02 Score=34.36 Aligned_cols=8 Identities=13% Similarity=0.181 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000277 1136 ISDQEVSA 1143 (1733)
Q Consensus 1136 ~l~~Ei~~ 1143 (1733)
.+..++..
T Consensus 92 ~Lk~~in~ 99 (230)
T PF10146_consen 92 PLKDEINE 99 (230)
T ss_pred HHHHHHHH
Confidence 33333333
No 171
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=70.32 E-value=2e+02 Score=32.85 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 000277 946 SLEDEMSVAKNNMSVLICEKEEA 968 (1733)
Q Consensus 946 ~L~~~l~~le~el~~L~e~lee~ 968 (1733)
.|...+......+++++.-+.++
T Consensus 95 ~Leddlsqt~aikeql~kyiReL 117 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIREL 117 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 172
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=70.06 E-value=2.6e+02 Score=33.94 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000277 876 ALASELAETQSTMKSLEDALSV 897 (1733)
Q Consensus 876 ele~el~~l~~e~e~le~eLee 897 (1733)
-+..+++.++.+.+.+..-.+.
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEq 34 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQ 34 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 173
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=69.91 E-value=3.6e+02 Score=35.59 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1115 SMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNA 1150 (1733)
Q Consensus 1115 ~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~k 1150 (1733)
.|...+.....++..+.+....+...+.+|...++.
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~q 255 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQ 255 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333444444444555555555555555554444443
No 174
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=69.07 E-value=1.8e+02 Score=31.70 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 977 VELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAML 1017 (1733)
Q Consensus 977 ~eL~kl~~el~~l~~klee~~~~ieeLee~l~kle~~l~~l 1017 (1733)
.+...+..++..++..+......++.|+..-.....++...
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eV 67 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEV 67 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555554443
No 175
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.94 E-value=63 Score=36.71 Aligned_cols=20 Identities=15% Similarity=-0.022 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000277 572 ELQEKDYNQKELNDLLCKYE 591 (1733)
Q Consensus 572 ~~~E~e~L~~eL~~l~~e~~ 591 (1733)
+..+...|..++..++.+..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 176
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=68.52 E-value=3e+02 Score=34.03 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 704 EEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTI 776 (1733)
Q Consensus 704 ~el~~l~~el~~l~~el~~~e~k~~~lre~l~~~~~k~k~l~~el~~l~~~ieel~~eie~lk~ei~~~e~el 776 (1733)
.++......+...+..+..++.++..+...+... ..+...++..+.....++.....-+..+..+.
T Consensus 228 ~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~-------~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~ 293 (344)
T PF12777_consen 228 AELEEAEEQLAEKQAELAELEEKLAALQKEYEEA-------QKEKQELEEEIEETERKLERAEKLISGLSGEK 293 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhccHHHHHhhhcchh
Confidence 3333333444444444444444444443333322 22234444444444444444444444433333
No 177
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.01 E-value=70 Score=29.92 Aligned_cols=63 Identities=24% Similarity=0.282 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q 000277 328 LNLKRREEESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKL 390 (1733)
Q Consensus 328 ~elk~~~~~~~e~l~~L~~E~~~L~~el~~~~~~i~~~~~el~~~~~eL~ele~~l~~l~eki 390 (1733)
..+..++....+.+..|..++..|..+...+......+..+...+..+.+.+..++..+-.++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666666666666777777766666666666666666666655555555555555544443
No 178
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.82 E-value=2.9e+02 Score=34.60 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 000277 1033 VLELEQVREEFVSQT 1047 (1733)
Q Consensus 1033 E~el~~lq~Ele~l~ 1047 (1733)
+..+..|+.++.+++
T Consensus 434 d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 434 DEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHhHh
Confidence 333444444444443
No 179
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=67.25 E-value=2.8e+02 Score=33.24 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000277 895 LSVAEDKITQLADEKRQVEVGKKNVEEELEK 925 (1733)
Q Consensus 895 Leele~~i~~L~ke~~~le~~~~el~~eLe~ 925 (1733)
...++..+..+..+...++-+++.+..+...
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~E 159 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGE 159 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence 3334444444444444444444444444333
No 180
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=66.82 E-value=2.4e+02 Score=32.39 Aligned_cols=53 Identities=17% Similarity=0.178 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1087 TLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQ 1139 (1733)
Q Consensus 1087 elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~Le~e~k~l~~ 1139 (1733)
+++.....+.+-+..+...+..++..+--|+..|.+...+|..+...+..+.+
T Consensus 254 Elkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 254 ELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444455666666666666666666666666665555433
No 181
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.59 E-value=69 Score=41.21 Aligned_cols=81 Identities=15% Similarity=0.238 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 748 RENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSNDLDCIRKMEADLIAMKDERNQFEHFLLESNNMLQKVLET 827 (1733)
Q Consensus 748 l~~l~~~ieel~~eie~lk~ei~~~e~el~~le~el~~L~~~le~l~~le~ei~~lk~e~eele~~l~e~e~~l~~l~~~ 827 (1733)
+..+...++.++.++..|+..+..++.++..|+.++..+......-.....++..+..++..++..|.+...++..|...
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~ 503 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444433222212223344444444445555554444444444333
Q ss_pred H
Q 000277 828 V 828 (1733)
Q Consensus 828 i 828 (1733)
+
T Consensus 504 l 504 (652)
T COG2433 504 L 504 (652)
T ss_pred H
Confidence 3
No 182
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=65.58 E-value=3.6e+02 Score=33.90 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000277 1034 LELEQVREEFVSQTSKLTE 1052 (1733)
Q Consensus 1034 ~el~~lq~Ele~l~~~l~~ 1052 (1733)
+.++.++.-+......+..
T Consensus 390 k~lqnLqe~la~tqk~LqE 408 (527)
T PF15066_consen 390 KTLQNLQEALANTQKHLQE 408 (527)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 183
>PRK11281 hypothetical protein; Provisional
Probab=65.53 E-value=6e+02 Score=36.46 Aligned_cols=6 Identities=17% Similarity=-0.086 Sum_probs=2.4
Q ss_pred hhhhhh
Q 000277 1673 ESQKEV 1678 (1733)
Q Consensus 1673 ~~~~~~ 1678 (1733)
|.|.++
T Consensus 919 glQ~il 924 (1113)
T PRK11281 919 GLQEIF 924 (1113)
T ss_pred HHHHHH
Confidence 344443
No 184
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.99 E-value=3.6e+02 Score=33.73 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000277 1133 EKRISDQEVSALNSKLN 1149 (1733)
Q Consensus 1133 e~k~l~~Ei~~L~~~l~ 1149 (1733)
....+..++.++..++.
T Consensus 470 ~tg~~~revrdlE~qI~ 486 (521)
T KOG1937|consen 470 ETGALKREVRDLESQIY 486 (521)
T ss_pred HcchHHHHHHHHHHHHh
Confidence 33444555555555444
No 185
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=64.46 E-value=3.9e+02 Score=33.96 Aligned_cols=102 Identities=14% Similarity=0.182 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000277 1043 FVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLK 1122 (1733)
Q Consensus 1043 le~l~~~l~~~~~~i~~Le~el~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee 1122 (1733)
+.++..++..++.++..+...+......+.....+.-.+-.++.+++.++..+.-+.+....-+......-..+..++.+
T Consensus 200 y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~E 279 (596)
T KOG4360|consen 200 YGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEE 279 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33445555555555555555555554445444455555555555555554444443333222233333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000277 1123 AKNDISVLEGEKRISDQEVSAL 1144 (1733)
Q Consensus 1123 ~~~~le~Le~e~k~l~~Ei~~L 1144 (1733)
+++...++.......+.+++.|
T Consensus 280 leDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 280 LEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4433333333333334444333
No 186
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.36 E-value=3.7e+02 Score=33.64 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 949 DEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTE 1019 (1733)
Q Consensus 949 ~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~klee~~~~ieeLee~l~kle~~l~~l~e 1019 (1733)
..++.++.++..+.++++....-...+..+++++-..+. +. ....++.++-..+.+....|.....
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~--rk---~ytqrikEi~gniRKq~~DI~Kil~ 410 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQ--RK---VYTQRIKEIDGNIRKQEQDIVKILE 410 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhH--HH---HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334455555555555555444444444444444433332 11 2344555665666666666554443
No 187
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=64.34 E-value=1.8e+02 Score=30.07 Aligned_cols=32 Identities=13% Similarity=0.313 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000277 1096 KDEAGSQAVKLADAHTTIKSMEDALLKAKNDI 1127 (1733)
Q Consensus 1096 ~~El~~~~~el~~~~~el~~L~~~Lee~~~~l 1127 (1733)
...+...+..+....+++..+...|...+.-+
T Consensus 83 ~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al 114 (136)
T PF11570_consen 83 QKDVQNKQNKLKAAQKELNAADEELNRIQAAL 114 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 33333333333333444444443333333333
No 188
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=63.29 E-value=13 Score=44.36 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 947 LEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKS 1002 (1733)
Q Consensus 947 L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~klee~~~~iee 1002 (1733)
+...+....+++..+.+.+-.++.....+...+..+...+..+...+..+...+.+
T Consensus 19 lTss~s~s~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~ 74 (326)
T PF04582_consen 19 LTSSISTSPGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLAD 74 (326)
T ss_dssp --------------------------------------------------------
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333445555555554444444444444444444444444444333333333
No 189
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=62.75 E-value=1.1e+02 Score=39.63 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhH
Q 000277 342 SHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLS 391 (1733)
Q Consensus 342 ~~L~~E~~~L~~el~~~~~~i~~~~~el~~~~~eL~ele~~l~~l~eki~ 391 (1733)
....+++..+...++.++.++..+...+..+.+++..++.++..+..+..
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666655554
No 190
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=62.72 E-value=3.1e+02 Score=32.17 Aligned_cols=34 Identities=32% Similarity=0.174 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 961 LICEKEEAQASGAAAVVELEQVREEFASQTSKLT 994 (1733)
Q Consensus 961 L~e~lee~q~~k~~le~eL~kl~~el~~l~~kle 994 (1733)
|...+.+....+..+.........+...|...+.
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444443
No 191
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=60.71 E-value=2.4e+02 Score=30.26 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 946 SLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVE 1011 (1733)
Q Consensus 946 ~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~klee~~~~ieeLee~l~kle 1011 (1733)
.+...+..+..++..+...+..+......+++++..+......+..++..+...+....+.+.++.
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444443333333333333333
No 192
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=59.65 E-value=5.1e+02 Score=33.70 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=41.4
Q ss_pred HHHHHhhcCCccc---cccCccchhhhHHHHHHHHHHHhhccccchhHHHHhhhhhhhhhhhh--hhhhhhHHhhHhhhh
Q 000277 1619 EKIVNMLESNEFV---VNQKSSGSKGLLAVLEKQIMTLHSDAENSKSKVQELGNKLLESQKEV--DDLTTKVDLLEESLH 1693 (1733)
Q Consensus 1619 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 1693 (1733)
-|++++|-+-|.- -+=-.+|+++-|=.+|= +-|+-+.|+=|.+. -.|+. --|+|+.+.|
T Consensus 717 hrvmeWLrsiDLAEytpNLrgaGVhGaLmiyEP--------rFtaetlA~lLniP---P~KTLLRRHLtthFn~L----- 780 (861)
T KOG1899|consen 717 HRVMEWLRSIDLAEYTPNLRGAGVHGALMIYEP--------RFTAETLAELLNIP---PHKTLLRRHLTTHFNQL----- 780 (861)
T ss_pred HHHHHHHHhccHHHhCcccccCCCCcceEEecc--------cccHHHHHHHHcCC---chHHHHHHHHHHHHHHH-----
Confidence 4555655554332 23345666665544442 34666777777663 22322 3577777654
Q ss_pred ccCCCchhhhhhhcc-ccCCC
Q 000277 1694 GRRDQPEIVQERSIF-EASSL 1713 (1733)
Q Consensus 1694 ~~~~~~~~~~~~~~~-~~~~~ 1713 (1733)
+-|+|.++..=| .||-.
T Consensus 781 ---iGpeai~~KRd~maap~Y 798 (861)
T KOG1899|consen 781 ---IGPEAIADKRDAMAAPNY 798 (861)
T ss_pred ---hCcHhhhhhhhHhhCCCC
Confidence 778888776434 34433
No 193
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=59.14 E-value=1.6e+02 Score=27.66 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=35.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 938 AEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKT 999 (1733)
Q Consensus 938 eEl~~~~~~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~klee~~~~ 999 (1733)
+.+...+..+-+.+..++.++..|..+...+......+..+..++..+...|...+..+...
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555556655555555556666666666666666666665554433
No 194
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=58.76 E-value=3.3e+02 Score=31.90 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 000277 1173 LNDLQMHM 1180 (1733)
Q Consensus 1173 leele~~l 1180 (1733)
+..+...|
T Consensus 133 l~~L~~~l 140 (251)
T PF11932_consen 133 LARLRAML 140 (251)
T ss_pred HHHHHHhh
Confidence 33344333
No 195
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=58.02 E-value=3.9e+02 Score=31.85 Aligned_cols=6 Identities=0% Similarity=-0.330 Sum_probs=2.2
Q ss_pred HHHhch
Q 000277 1209 DIRIGV 1214 (1733)
Q Consensus 1209 dL~~~l 1214 (1733)
=+..||
T Consensus 210 lls~yL 215 (302)
T PF10186_consen 210 LLSRYL 215 (302)
T ss_pred HHHHHh
Confidence 333333
No 196
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=57.34 E-value=4.5e+02 Score=32.65 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1023 EEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIK 1058 (1733)
Q Consensus 1023 ee~~~~~~~lE~el~~lq~Ele~l~~~l~~~~~~i~ 1058 (1733)
..+.+.+...|.++.+|+.+...+..+.-....+.+
T Consensus 44 ~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~ 79 (459)
T KOG0288|consen 44 RAIKAKLQEKELELNRLQEENTQLNEERVREEATEK 79 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666667777776666554444333333
No 197
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=56.73 E-value=1.1e+02 Score=32.85 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhcccccCCCccc
Q 000277 636 ISKCIGKIREQTCASSDTSGAD 657 (1733)
Q Consensus 636 a~~~i~~LK~~~~~l~k~~~~~ 657 (1733)
..-.++|+..+..|.+...+.+
T Consensus 9 e~ivl~~~~eqNrP~ssq~v~~ 30 (201)
T KOG4603|consen 9 EGIVLRYLQEQNRPYSSQDVFG 30 (201)
T ss_pred HHHHHHHHHHhcCCCchHHHHH
Confidence 3456888888888877544443
No 198
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=55.93 E-value=1.1e+02 Score=34.37 Aligned_cols=43 Identities=26% Similarity=0.314 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 853 INECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDAL 895 (1733)
Q Consensus 853 i~~Le~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eL 895 (1733)
+..+...+.+...+...+...+..++.+++..+.++..++.+.
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~ 179 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN 179 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444444444444443333333333
No 199
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=55.70 E-value=6.3e+02 Score=33.55 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=14.4
Q ss_pred hHHHHHH---hhcCCccccccCccchhhhHHHH
Q 000277 1617 GLEKIVN---MLESNEFVVNQKSSGSKGLLAVL 1646 (1733)
Q Consensus 1617 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 1646 (1733)
+=+|.|+ -+|=+++-.+=+-+|+++-|=+|
T Consensus 762 sN~RvirWV~~igL~eya~NL~eSGVHGaLlaL 794 (916)
T KOG0249|consen 762 SNDRVIRWVQSIGLGEYANNLKESGVHGALLAL 794 (916)
T ss_pred ecHHHHHHHHhcCHHHHhhhhhhhcccceeeee
Confidence 3466663 34444444444555555544333
No 200
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=55.19 E-value=8.5e+02 Score=34.92 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=6.3
Q ss_pred HHhHHHHHHHHHHHHH
Q 000277 1082 QVGKTTLENELQMLKD 1097 (1733)
Q Consensus 1082 e~~l~elk~el~~l~~ 1097 (1733)
+..+++++-+...+.+
T Consensus 339 ~~~IAdlRl~~f~~~q 354 (1109)
T PRK10929 339 DTEMAQLRVQRLRYED 354 (1109)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444433333333
No 201
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=55.18 E-value=1.9e+02 Score=27.41 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=24.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1109 AHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRD 1153 (1733)
Q Consensus 1109 ~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~kl~~ 1153 (1733)
+..+-..+......+......|..++..++.+-..+..++..+..
T Consensus 30 LKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 30 LKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444455555566666777777666666666655433
No 202
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=54.94 E-value=5.6e+02 Score=32.68 Aligned_cols=13 Identities=8% Similarity=0.307 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 000277 977 VELEQVREEFASQ 989 (1733)
Q Consensus 977 ~eL~kl~~el~~l 989 (1733)
.++..+..++..+
T Consensus 261 ~~l~~le~~l~~l 273 (444)
T TIGR03017 261 TDIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 203
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=54.70 E-value=3.3e+02 Score=32.03 Aligned_cols=31 Identities=10% Similarity=0.156 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000277 1066 QVEANVAVLTEQNNVLQVGKTTLENELQMLK 1096 (1733)
Q Consensus 1066 ~~~~~l~~l~~e~~~~e~~l~elk~el~~l~ 1096 (1733)
.+++.+.+....+..-+.+|.+++.++.+++
T Consensus 72 HLkakLkes~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 72 HLKAKLKESENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444443
No 204
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=54.59 E-value=6.9e+02 Score=33.64 Aligned_cols=115 Identities=10% Similarity=0.118 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000277 845 KVNWIASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELE 924 (1733)
Q Consensus 845 ki~~l~~~i~~Le~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele~~i~~L~ke~~~le~~~~el~~eLe 924 (1733)
.+..+...--.|+.++.+.....+.++..-+++-.-++....+...+...+.+....+-.. ...+.-+...++-+++
T Consensus 428 El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~---kq~~d~e~~rik~ev~ 504 (861)
T PF15254_consen 428 ELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLEN---KQQFDIETTRIKIEVE 504 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHH
Confidence 3445555555666666666655555655555555555555555555555555444443322 2233333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000277 925 KAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLI 962 (1733)
Q Consensus 925 ~~~~el~~l~~~leEl~~~~~~L~~~l~~le~el~~L~ 962 (1733)
.+-.....+.-.++.....-..|.-.+++-..++..|+
T Consensus 505 eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~ 542 (861)
T PF15254_consen 505 EALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLR 542 (861)
T ss_pred HHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHH
Confidence 44444444444444444444444444444344444443
No 205
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.29 E-value=1.6e+02 Score=33.52 Aligned_cols=36 Identities=8% Similarity=-0.006 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000277 564 RLSASLSAELQEKDYNQKELNDLLCKYEEIVEKANK 599 (1733)
Q Consensus 564 ~l~~~l~~~~~E~e~L~~eL~~l~~e~~e~~~~~~~ 599 (1733)
++...+.........|..+.+.++.++..++.++..
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444433
No 206
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=53.96 E-value=1.7e+02 Score=26.50 Aligned_cols=51 Identities=25% Similarity=0.265 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 965 KEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVA 1015 (1733)
Q Consensus 965 lee~q~~k~~le~eL~kl~~el~~l~~klee~~~~ieeLee~l~kle~~l~ 1015 (1733)
++....++..+..+|.++......+..++.+...+...|...+..+...+.
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555556666666655555566666555555555555555555543
No 207
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=53.37 E-value=4.1e+02 Score=30.67 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 000277 810 FEHFLLESNNMLQKVLETVDRII 832 (1733)
Q Consensus 810 le~~l~e~e~~l~~l~~~i~el~ 832 (1733)
+...+..+...|..+++.|..+.
T Consensus 182 lK~ele~tk~Klee~QnelsAwk 204 (330)
T KOG2991|consen 182 LKGELEQTKDKLEEAQNELSAWK 204 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhheee
Confidence 33334444444444444454443
No 208
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=53.11 E-value=1e+03 Score=35.22 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 000277 281 STYMLIEKYNQMLYEIYQLGQCLSKPD 307 (1733)
Q Consensus 281 g~~~~~Ek~~e~~~Eie~L~~~l~e~~ 307 (1733)
.++.-.+.|..+...++.+...+..+.
T Consensus 224 ~l~e~~~~~~~~~~~le~l~~~~~~l~ 250 (1353)
T TIGR02680 224 DVADALEQLDEYRDELERLEALERALR 250 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554443
No 209
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=52.68 E-value=4.6e+02 Score=31.01 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000277 1043 FVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLK 1122 (1733)
Q Consensus 1043 le~l~~~l~~~~~~i~~Le~el~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee 1122 (1733)
++...-++.|+...+..+-.....+. .......+....+..+..++.++.....++...++++ ..+...+.+
T Consensus 161 Lesa~vkV~WLR~~L~Ei~Ea~e~~~-~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~-------~e~~~~i~e 232 (269)
T PF05278_consen 161 LESAKVKVDWLRSKLEEILEAKEIYD-QHETREEEKEEKDRKLELKKEELEELEEELKQKEKEV-------KEIKERITE 232 (269)
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 44444566676665555433322221 1222223333344444444444444444444444444 444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1123 AKNDISVLEGEKRISDQEVSALNSKLNA 1150 (1733)
Q Consensus 1123 ~~~~le~Le~e~k~l~~Ei~~L~~~l~k 1150 (1733)
...++..++-+...+...+..+.+++.+
T Consensus 233 ~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 233 MKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554444443
No 210
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.41 E-value=2.4e+02 Score=34.09 Aligned_cols=57 Identities=18% Similarity=0.353 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 320 FAAARDELLNLKRREEESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTEL 376 (1733)
Q Consensus 320 ~~~l~~El~elk~~~~~~~e~l~~L~~E~~~L~~el~~~~~~i~~~~~el~~~~~eL 376 (1733)
++.++..+.+++.+..+-.-....|.++...|..++..++..+..++..+..+++++
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666665555556666777777777777777776666666666655555
No 211
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.07 E-value=6.3e+02 Score=32.47 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1022 KEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANV 1071 (1733)
Q Consensus 1022 ~ee~~~~~~~lE~el~~lq~Ele~l~~~l~~~~~~i~~Le~el~~~~~~l 1071 (1733)
++.-+..|...+..+.++..-..+.... -.....|..++.+...+...+
T Consensus 389 lEqkkEec~kme~qLkkAh~~~ddar~~-pe~~d~i~~le~e~~~y~de~ 437 (654)
T KOG4809|consen 389 LEQKKEECSKMEAQLKKAHNIEDDARMN-PEFADQIKQLEKEASYYRDEC 437 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhcC-hhhHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666665555444321 112333444444444443333
No 212
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=51.86 E-value=5.9e+02 Score=32.09 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000277 895 LSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKE 966 (1733)
Q Consensus 895 Leele~~i~~L~ke~~~le~~~~el~~eLe~~~~el~~l~~~leEl~~~~~~L~~~l~~le~el~~L~e~le 966 (1733)
|.+++..|..|-.++-.+--+..++...++.+...+......+.+-......+.-.+..+....-.|++++-
T Consensus 364 inkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~ 435 (527)
T PF15066_consen 364 INKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYM 435 (527)
T ss_pred HHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444444444444333333344444444444444444444455444455555555544444444444443
No 213
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=51.82 E-value=3.7e+02 Score=29.73 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 000277 1070 NVAVLTEQNNVLQVGKTTLENEL 1092 (1733)
Q Consensus 1070 ~l~~l~~e~~~~e~~l~elk~el 1092 (1733)
.+..+...+...+..|..++.++
T Consensus 128 E~~rLt~~Q~~ae~Ki~~LE~KL 150 (178)
T PF14073_consen 128 EYLRLTATQSLAETKIKELEEKL 150 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 214
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=51.57 E-value=2.1e+02 Score=26.97 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=13.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1110 HTTIKSMEDALLKAKNDISVLEGEKRISDQEVSA 1143 (1733)
Q Consensus 1110 ~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~ 1143 (1733)
.+.+..|...+.+....+..+...+.....++..
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 215
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.05 E-value=3.5e+02 Score=31.69 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=5.2
Q ss_pred HHHHHHHhchhc
Q 000277 1205 LIVEDIRIGVVG 1216 (1733)
Q Consensus 1205 ~~iedL~~~l~a 1216 (1733)
++++-++...+.
T Consensus 153 ~vlea~~~E~~y 164 (251)
T PF11932_consen 153 RVLEAYQIEMEY 164 (251)
T ss_pred HHHHHHHHHHHh
Confidence 444444444333
No 216
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=50.90 E-value=4.8e+02 Score=30.74 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000277 1074 LTEQNNVLQVGKTTLENELQMLKDEAGSQAV 1104 (1733)
Q Consensus 1074 l~~e~~~~e~~l~elk~el~~l~~El~~~~~ 1104 (1733)
+.+.+..+...+.+++.++..|..++..+..
T Consensus 191 m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 191 MQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555444433333
No 217
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=50.31 E-value=3.4e+02 Score=28.86 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred hhHhhHhhhHHHhhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 500 GISLDFYKLKDAVSLIDVPETGSFSDLESRLAWLKESFYQAKDEANVLLDQLNRMKEAARNEIDRLSASLSAELQEKDYN 579 (1733)
Q Consensus 500 ~~~~e~~~l~e~l~~~~~~~~~~~~ele~ei~~L~~~~~~~~~e~~~l~~El~~~~~~l~~~~~~l~~~l~~~~~E~e~L 579 (1733)
..+.-|..-.+++.+. -.+...++..-.....+....+..++.++.-+-.=..+++.-+...+...-.++..|
T Consensus 31 sals~f~AkEeeIErk-------KmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl 103 (159)
T PF04949_consen 31 SALSAFRAKEEEIERK-------KMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPL 103 (159)
T ss_pred HHHHHHHhHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHh
Q 000277 580 QKELNDLLCKYEEIVEKANKISLEKDHMVRVLLKE 614 (1733)
Q Consensus 580 ~~eL~~l~~e~~e~~~~~~~~~~~~~~l~~~l~el 614 (1733)
..-.+....+|.++....+..+.++..+++.|++|
T Consensus 104 ~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eL 138 (159)
T PF04949_consen 104 GQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMEL 138 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 218
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=49.63 E-value=6.1e+02 Score=34.25 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=49.6
Q ss_pred CCchHHHHHHHHHhhhcccchhhhhhcccchHHHHhhhhhhhHHHHhhHHHhhhhhcCchhhHhhhhhhHHHHhhHHHHH
Q 000277 1543 PESSAIVKKLFSIINSATKLPHQIDLLEHGKQELQSILSTQTAEIEHLKGEVETHLRNKPDLEKMKIEFAEFTFGLEKIV 1622 (1733)
Q Consensus 1543 ~~~~~~~~k~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1622 (1733)
...-.+++..|++.-+.+.|-.=|.+|.....= --.|| +.||..| .
T Consensus 557 ~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~H--------------------iPyRN-----------SKLT~lL---q 602 (670)
T KOG0239|consen 557 GVTGERLKEAQNINKSLSALGDVISALASKRSH--------------------IPYRN-----------SKLTQLL---Q 602 (670)
T ss_pred CCchhhhHHHHHhchhhhhhHHHHHHHhhcCCC--------------------Ccccc-----------cchHHHh---H
Confidence 334446677777777777666666665541110 01111 3456555 6
Q ss_pred HhhcCCc-----cccccCccchhhhHHHHHHHHHHHhhccccch
Q 000277 1623 NMLESNE-----FVVNQKSSGSKGLLAVLEKQIMTLHSDAENSK 1661 (1733)
Q Consensus 1623 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1661 (1733)
+.|||.. +-++|.++.+-+.++.|+-.--.-.++-|.++
T Consensus 603 ~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 603 DSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred hhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 7777643 23567777777777777766666666666665
No 219
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=49.15 E-value=3.3e+02 Score=32.93 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 853 INECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKI 902 (1733)
Q Consensus 853 i~~Le~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele~~i 902 (1733)
+..+...+.+++.+..+.--...-|..+...+.-+++.+...|.+++..+
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~ 128 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETL 128 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333333333333333333333333333333333
No 220
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=49.12 E-value=4.9e+02 Score=30.30 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 855 ECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLA 906 (1733)
Q Consensus 855 ~Le~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele~~i~~L~ 906 (1733)
.|+..+......+..+...+......+.........+...+.+....+..+.
T Consensus 82 eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~ 133 (240)
T PF12795_consen 82 ELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIR 133 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444433333
No 221
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=48.97 E-value=1.9e+02 Score=27.27 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 957 NMSVLICEKEEAQASGAAAVVELEQVREEFA 987 (1733)
Q Consensus 957 el~~L~e~lee~q~~k~~le~eL~kl~~el~ 987 (1733)
.|..|..+-+.+...-......|.+++..+.
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~ 43 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIK 43 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3334433333333333333333333333333
No 222
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=48.51 E-value=1.7e+02 Score=26.59 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1292 RKLQTTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLL 1340 (1733)
Q Consensus 1292 ~~~~~~e~e~~~~~e~~e~L~~ql~~le~~k~~LE~~i~~Le~el~e~~ 1340 (1733)
+..+.+.+++..+....-.+...+.+.+...+.|...|..|..+|+++.
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4446677777777777777888888888888888888888888887753
No 223
>PF14992 TMCO5: TMCO5 family
Probab=48.39 E-value=5.4e+02 Score=30.61 Aligned_cols=31 Identities=6% Similarity=0.222 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000277 801 IAMKDERNQFEHFLLESNNMLQKVLETVDRI 831 (1733)
Q Consensus 801 ~~lk~e~eele~~l~e~e~~l~~l~~~i~el 831 (1733)
..+...++.+-..+..++..+.++...|...
T Consensus 14 Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~ 44 (280)
T PF14992_consen 14 QRLDEANQSLLQKIQEKEGAIQSLEREITKM 44 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555443
No 224
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=47.44 E-value=5.7e+02 Score=30.60 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000277 1067 VEANVAVLTEQNNVLQVGKTTLENELQ 1093 (1733)
Q Consensus 1067 ~~~~l~~l~~e~~~~e~~l~elk~el~ 1093 (1733)
|...++.+.+++..+++..-.|..+..
T Consensus 248 fK~E~ekmtKk~kklEKE~l~wr~K~e 274 (391)
T KOG1850|consen 248 FKQEMEKMTKKIKKLEKETLIWRTKWE 274 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444443
No 225
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=46.21 E-value=6.1e+02 Score=30.58 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 000277 1139 QEVSALNSKLNA 1150 (1733)
Q Consensus 1139 ~Ei~~L~~~l~k 1150 (1733)
.-|..|++++..
T Consensus 201 ~yI~~LEsKVqD 212 (401)
T PF06785_consen 201 AYIGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHHHH
Confidence 333334444333
No 226
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=46.06 E-value=3.1e+02 Score=27.17 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 000277 1002 SLEDSLAQVEAN 1013 (1733)
Q Consensus 1002 eLee~l~kle~~ 1013 (1733)
.++..+..+...
T Consensus 28 ~lE~k~~rl~~E 39 (96)
T PF08647_consen 28 ILEQKKLRLEAE 39 (96)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 227
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.06 E-value=2.4e+02 Score=25.88 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=27.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1106 LADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNAC 1151 (1733)
Q Consensus 1106 l~~~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~kl 1151 (1733)
+..+..+-..+..+...+....+.|.+++..++.+-.....++..+
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444455555666667777777777777766666665544
No 228
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=45.86 E-value=2.4e+02 Score=26.19 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 859 TKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEK 909 (1733)
Q Consensus 859 ~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele~~i~~L~ke~ 909 (1733)
.+..+...++.+.+.+......+..+..+.+.....|...-..+.+|..+.
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~ 56 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEEN 56 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444444343333
No 229
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=45.20 E-value=7.9e+02 Score=31.59 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000277 1029 GAAAVLELEQVREEFVSQTS 1048 (1733)
Q Consensus 1029 ~~~lE~el~~lq~Ele~l~~ 1048 (1733)
+..+...+..++..+.....
T Consensus 293 l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 293 ITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333
No 230
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=45.10 E-value=2.8e+02 Score=26.37 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 000277 1056 TIKSLEDALSQVE 1068 (1733)
Q Consensus 1056 ~i~~Le~el~~~~ 1068 (1733)
+|.-|..++..+.
T Consensus 19 tI~LLqmEieELK 31 (79)
T PRK15422 19 TITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 231
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=42.61 E-value=4.2e+02 Score=33.21 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhHHHH-HhchHHHHHHHHHHHHHHHHH
Q 000277 366 NAELSKMKTELEHEKMKCTGTKEKLSLAV-TKGKALVQQRDSLKQSLADKT 415 (1733)
Q Consensus 366 ~~el~~~~~eL~ele~~l~~l~eki~~~~-~k~~~l~~~~~~Lk~elee~~ 415 (1733)
+.-++-.+.++..+++.|....+++.... .+.++++...+.+...|..++
T Consensus 268 Nd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 268 NDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33456678888888888888888887553 335666644444444444444
No 232
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.05 E-value=8e+02 Score=30.77 Aligned_cols=7 Identities=0% Similarity=0.140 Sum_probs=3.0
Q ss_pred HHHHHHh
Q 000277 639 CIGKIRE 645 (1733)
Q Consensus 639 ~i~~LK~ 645 (1733)
.+.+++.
T Consensus 14 Iv~~l~~ 20 (446)
T KOG4438|consen 14 IVICLKD 20 (446)
T ss_pred HHHHHHh
Confidence 3444444
No 233
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.01 E-value=7.8e+02 Score=30.36 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 844 EKVNWIASYINECHDTKTQLEQELGNVK 871 (1733)
Q Consensus 844 ~ki~~l~~~i~~Le~~l~ele~ei~~l~ 871 (1733)
.++.+....+..++.++......+....
T Consensus 8 ~KL~et~~~V~~m~~~L~~~~~~L~~k~ 35 (344)
T PF12777_consen 8 DKLKETEEQVEEMQEELEEKQPELEEKQ 35 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444444333
No 234
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=40.99 E-value=1.3e+03 Score=33.07 Aligned_cols=17 Identities=0% Similarity=0.081 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000277 854 NECHDTKTQLEQELGNV 870 (1733)
Q Consensus 854 ~~Le~~l~ele~ei~~l 870 (1733)
..++..+..+......+
T Consensus 68 ~~~~~~i~~ap~~~~~~ 84 (1109)
T PRK10929 68 KQYQQVIDNFPKLSAEL 84 (1109)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 33333333333333333
No 235
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=40.75 E-value=4e+02 Score=26.97 Aligned_cols=39 Identities=8% Similarity=0.138 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhCC
Q 000277 579 NQKELNDLLCKYEEIVEKANKISLEKDHMVRVLLKESGT 617 (1733)
Q Consensus 579 L~~eL~~l~~e~~e~~~~~~~~~~~~~~l~~~l~el~~~ 617 (1733)
+-..++.+++++..+..++..+..+.+....++.++..+
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l 46 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERL 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444444444444443
No 236
>PLN02939 transferase, transferring glycosyl groups
Probab=39.88 E-value=1.3e+03 Score=32.56 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccC
Q 000277 407 LKQSLADKTIELEKCLAELQEKSSALQAAELSKEEFIKTENLVASLQETLQQSNLMLEKSEEVLAQI 473 (1733)
Q Consensus 407 Lk~elee~~~ele~~~~ele~~~~~le~~e~l~~el~~~k~~~~~L~~~~~ek~~~l~~~e~~l~~~ 473 (1733)
+..++.-++.+.--++..++.+...+.......+-+..+.++..-|...+.+.++.+-....-++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKL 290 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 3445555555555566666666666666555555556666666666666666555554443333333
No 237
>PRK10869 recombination and repair protein; Provisional
Probab=39.85 E-value=1e+03 Score=31.44 Aligned_cols=15 Identities=20% Similarity=0.051 Sum_probs=8.0
Q ss_pred ccccccccccccccc
Q 000277 1235 DIDNIEMYDNEVTVL 1249 (1733)
Q Consensus 1235 dlN~iEl~~~~~~~~ 1249 (1733)
.+..++.+..+-.|.
T Consensus 408 G~d~veF~~~~n~g~ 422 (553)
T PRK10869 408 GADRIEFRVTTNPGQ 422 (553)
T ss_pred CceEEEEEEecCCCC
Confidence 355566666554443
No 238
>PF15294 Leu_zip: Leucine zipper
Probab=39.29 E-value=7.3e+02 Score=29.55 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhHHHHHHHHHHH
Q 000277 856 CHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLAD---------EKRQVEVGKKNVEEELEKA 926 (1733)
Q Consensus 856 Le~~l~ele~ei~~l~~~l~ele~el~~l~~e~e~le~eLeele~~i~~L~k---------e~~~le~~~~el~~eLe~~ 926 (1733)
+...+..+..+...++..+..++.....+-.+...+..+|.++......... .+..++..+..++.+++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek- 208 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEK- 208 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 000277 927 IEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAA----------AVVELEQVREEFASQTSKL 993 (1733)
Q Consensus 927 ~~el~~l~~~leEl~~~~~~L~~~l~~le~el~~L~e~lee~q~~k~~----------le~eL~kl~~el~~l~~kl 993 (1733)
.+........++...+....+++-..+.++.-....... +..-+.+.+.++..+++++
T Consensus 209 ---------~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 209 ---------ALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHh
No 239
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.08 E-value=5.6e+02 Score=28.74 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 405 DSLKQSLADKTIELEKCLAELQEK 428 (1733)
Q Consensus 405 ~~Lk~elee~~~ele~~~~ele~~ 428 (1733)
..++..+......+.++.+.|-.+
T Consensus 138 ~~~~~~~~~~~~~anrwTDNI~~l 161 (188)
T PF03962_consen 138 EKLKEEIKIAKEAANRWTDNIFSL 161 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 444445555555555555555443
No 240
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=37.90 E-value=6.7e+02 Score=28.66 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 946 SLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKL 993 (1733)
Q Consensus 946 ~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~kl 993 (1733)
-+...+..++..+..+...+.........+.+.+..+...+..|..+.
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A 74 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA 74 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555556666666666665444
No 241
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.83 E-value=1e+03 Score=30.76 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000277 1064 LSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDE 1098 (1733)
Q Consensus 1064 l~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~~E 1098 (1733)
+....++++.........++.+.+-.+-+..+..+
T Consensus 523 lektkQel~~tkarl~stqqslaEke~HL~nLr~e 557 (654)
T KOG4809|consen 523 LEKTKQELDATKARLASTQQSLAEKEAHLANLRIE 557 (654)
T ss_pred HHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555555544443
No 242
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=37.60 E-value=7e+02 Score=28.85 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 946 SLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTS 991 (1733)
Q Consensus 946 ~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~ 991 (1733)
-+...+..++.++..++..+.........+++.+..+......|..
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444555555555555544433
No 243
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=37.52 E-value=8.5e+02 Score=29.79 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhchh-----------HHHHHHHHHHHHHHHHhhHH
Q 000277 1165 RSVELIGHLNDLQMHMKDER-----------LLSAVKSCFERKIEGLQNME 1204 (1733)
Q Consensus 1165 ~~~el~~~leele~~lk~~~-----------~l~~ik~e~er~l~~lr~~~ 1204 (1733)
.+.++...-.+++..++|.+ +++.+|...+..|..++.+.
T Consensus 524 LKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqL 574 (593)
T KOG4807|consen 524 LKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQL 574 (593)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHH
Confidence 45556666677777766554 56667777777766665443
No 244
>PRK09343 prefoldin subunit beta; Provisional
Probab=35.83 E-value=5.2e+02 Score=26.79 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhCC
Q 000277 574 QEKDYNQKELNDLLCKYEEIVEKANKISLEKDHMVRVLLKESGT 617 (1733)
Q Consensus 574 ~E~e~L~~eL~~l~~e~~e~~~~~~~~~~~~~~l~~~l~el~~~ 617 (1733)
.++...-..++.++..+..+..+...+..+.+....++.++..+
T Consensus 7 ~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L 50 (121)
T PRK09343 7 PEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKL 50 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444445555555555555555444444444454555544
No 245
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.67 E-value=4.1e+02 Score=29.08 Aligned_cols=56 Identities=21% Similarity=0.382 Sum_probs=35.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 000277 522 SFSDLESRLAWLKESFYQAKDEANVLLDQLNRM-----KEAARNEIDRLSASLSAELQEKD 577 (1733)
Q Consensus 522 ~~~ele~ei~~L~~~~~~~~~e~~~l~~El~~~-----~~~l~~~~~~l~~~l~~~~~E~e 577 (1733)
.+..+..+|..|...+..++.+...++.++..+ ...+...+..+..++..+...+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677778888888888888888888887766 33444444444433333333333
No 246
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.62 E-value=6.9e+02 Score=28.14 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000277 1053 AYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDE 1098 (1733)
Q Consensus 1053 ~~~~i~~Le~el~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~~E 1098 (1733)
....+..|+..+..++.....+.......+..+..++.....+.++
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEE 174 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445444444444444444444444444444444444444
No 247
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=35.26 E-value=1.1e+03 Score=30.32 Aligned_cols=15 Identities=13% Similarity=-0.013 Sum_probs=6.7
Q ss_pred ccccchhhhhHHHHHh
Q 000277 1246 VTVLDADDITSCFRKT 1261 (1733)
Q Consensus 1246 ~~~~~~D~i~k~~rk~ 1261 (1733)
+.-+.+|. -.+++++
T Consensus 433 ~~p~Ss~~-~s~L~rL 447 (596)
T KOG4360|consen 433 GQPGSSDL-GSALQRL 447 (596)
T ss_pred CCCCCchH-HHHHHHH
Confidence 33444444 2445554
No 248
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.84 E-value=1.1e+02 Score=25.93 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000277 1296 TTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQND 1335 (1733)
Q Consensus 1296 ~~e~e~~~~~e~~e~L~~ql~~le~~k~~LE~~i~~Le~e 1335 (1733)
+++.+|..+...++.|+.....+...+..|.+.+..+...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566788888888888888888888777777777766643
No 249
>PF13166 AAA_13: AAA domain
Probab=33.72 E-value=1.4e+03 Score=31.13 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=4.1
Q ss_pred hHHHHHHHHhh
Q 000277 605 DHMVRVLLKES 615 (1733)
Q Consensus 605 ~~l~~~l~el~ 615 (1733)
+.+.+.|..++
T Consensus 30 Stlsr~l~~~~ 40 (712)
T PF13166_consen 30 STLSRILKSLC 40 (712)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 250
>PF13166 AAA_13: AAA domain
Probab=33.59 E-value=1.4e+03 Score=31.11 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 000277 689 RLQLNDLSNKLRV 701 (1733)
Q Consensus 689 ~~~~~~l~~~l~~ 701 (1733)
...+..+...+..
T Consensus 95 ~~~I~~l~~~l~~ 107 (712)
T PF13166_consen 95 EKEIEELKEELKK 107 (712)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 251
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=33.13 E-value=7.6e+02 Score=27.90 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHH
Q 000277 1085 KTTLENELQMLKD 1097 (1733)
Q Consensus 1085 l~elk~el~~l~~ 1097 (1733)
..+|+.++..+..
T Consensus 98 F~EWe~EL~~Y~~ 110 (201)
T PF11172_consen 98 FDEWEQELDQYSN 110 (201)
T ss_pred HHHHHHHHHHHcC
Confidence 5566666666554
No 252
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=30.81 E-value=1.3e+03 Score=30.06 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000277 1087 TLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISV 1129 (1733)
Q Consensus 1087 elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee~~~~le~ 1129 (1733)
++...+..+.+-+-..+..+..+.++...+.=+++.+...+..
T Consensus 389 elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~ 431 (511)
T PF09787_consen 389 ELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKE 431 (511)
T ss_pred hHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHh
Confidence 3344444444444444555667777777777777777766664
No 253
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=30.57 E-value=8.2e+02 Score=27.53 Aligned_cols=19 Identities=26% Similarity=0.386 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000277 760 SEIEKLKLNLQEQESTISE 778 (1733)
Q Consensus 760 ~eie~lk~ei~~~e~el~~ 778 (1733)
.+|.+++...+.++..+..
T Consensus 159 ~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333
No 254
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.22 E-value=7.3e+02 Score=28.45 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=19.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1106 LADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNA 1150 (1733)
Q Consensus 1106 l~~~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~k 1150 (1733)
+..+.+++......++.++.+...+.++...+..++..+.....+
T Consensus 160 ~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~ 204 (216)
T KOG1962|consen 160 LEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSK 204 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444433333
No 255
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=29.94 E-value=9.9e+02 Score=28.28 Aligned_cols=13 Identities=0% Similarity=0.271 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 000277 894 ALSVAEDKITQLA 906 (1733)
Q Consensus 894 eLeele~~i~~L~ 906 (1733)
+|.+++.++.++.
T Consensus 90 EI~eLksQL~RMr 102 (305)
T PF15290_consen 90 EIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 256
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=29.94 E-value=9.3e+02 Score=27.96 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 965 KEEAQASGAAAVVELEQVREEFASQ 989 (1733)
Q Consensus 965 lee~q~~k~~le~eL~kl~~el~~l 989 (1733)
....+..+..+...+..++.++..+
T Consensus 40 ~~~~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 40 AAEYQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 3333333344444444444444333
No 257
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.48 E-value=4.6e+02 Score=28.66 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000277 1092 LQMLKDEAGSQAVKLADAHTTIKSMED 1118 (1733)
Q Consensus 1092 l~~l~~El~~~~~el~~~~~el~~L~~ 1118 (1733)
+..+..++..+...+..+..++..+..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333334444444444444
No 258
>PRK10698 phage shock protein PspA; Provisional
Probab=29.32 E-value=9.3e+02 Score=27.76 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 946 SLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKL 993 (1733)
Q Consensus 946 ~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~kl 993 (1733)
.+..-+..++..+..++..+.........+.+++..+...+..|..+-
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA 75 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKA 75 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555666667777777777777775544
No 259
>PRK04406 hypothetical protein; Provisional
Probab=28.82 E-value=3.9e+02 Score=25.28 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000277 1043 FVSQTSKLTEAYTTIKSLED 1062 (1733)
Q Consensus 1043 le~l~~~l~~~~~~i~~Le~ 1062 (1733)
+.++..++......|..|..
T Consensus 13 i~~LE~~lAfQE~tIe~LN~ 32 (75)
T PRK04406 13 INDLECQLAFQEQTIEELND 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 260
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=28.80 E-value=1e+03 Score=28.13 Aligned_cols=10 Identities=10% Similarity=0.023 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 000277 987 ASQTSKLTEA 996 (1733)
Q Consensus 987 ~~l~~klee~ 996 (1733)
.+|+..++..
T Consensus 223 kDWR~H~~QM 232 (384)
T KOG0972|consen 223 KDWRLHLEQM 232 (384)
T ss_pred HHHHHHHHHH
Confidence 4455444433
No 261
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=28.74 E-value=1.3e+03 Score=29.08 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000277 1062 DALSQVEANVAVLTEQNNVLQVGKTTLENELQMLK 1096 (1733)
Q Consensus 1062 ~el~~~~~~l~~l~~e~~~~e~~l~elk~el~~l~ 1096 (1733)
.....+...+..+...+..+...+..|..-+..++
T Consensus 329 ~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve 363 (388)
T PF04912_consen 329 EEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVE 363 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555555444444
No 262
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=28.63 E-value=9.4e+02 Score=28.46 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1113 IKSMEDALLKAKNDISVLEGEKRIS 1137 (1733)
Q Consensus 1113 l~~L~~~Lee~~~~le~Le~e~k~l 1137 (1733)
+..|-.++..+...+.++....+.+
T Consensus 275 L~~l~q~fr~a~~~lse~~e~y~q~ 299 (384)
T KOG0972|consen 275 LASLMQKFRRATDTLSELREKYKQA 299 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 263
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=27.96 E-value=8.7e+02 Score=26.98 Aligned_cols=36 Identities=3% Similarity=0.032 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 852 YINECHDTKTQLEQELGNVKQEASALASELAETQST 887 (1733)
Q Consensus 852 ~i~~Le~~l~ele~ei~~l~~~l~ele~el~~l~~e 887 (1733)
....+..++..+++.+..++.+++.+...+.....+
T Consensus 58 q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~e 93 (178)
T PF14073_consen 58 QNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKE 93 (178)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667777777777777777777766555554433
No 264
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=27.41 E-value=1e+03 Score=27.73 Aligned_cols=209 Identities=12% Similarity=0.088 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 914 VGKKNVEEELEKAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKL 993 (1733)
Q Consensus 914 ~~~~el~~eLe~~~~el~~l~~~leEl~~~~~~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL~kl~~el~~l~~kl 993 (1733)
..+......++.++.++................-...+...-+.+-.-..=|-+....-..++....+.-........-.
T Consensus 14 e~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h 93 (239)
T PF05276_consen 14 EKLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSMH 93 (239)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 994 TEAYKTIKSLEDSLAQVE-ANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVA 1072 (1733)
Q Consensus 994 ee~~~~ieeLee~l~kle-~~l~~l~ee~~ee~~~~~~~lE~el~~lq~Ele~l~~~l~~~~~~i~~Le~el~~~~~~l~ 1072 (1733)
.-+...+.-++..+..-. ..+...-.+.+..+..+....+.++.+...+..........+...+..|++++...-....
T Consensus 94 ~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSr 173 (239)
T PF05276_consen 94 AAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSR 173 (239)
T ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000277 1073 VLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLK 1122 (1733)
Q Consensus 1073 ~l~~e~~~~e~~l~elk~el~~l~~El~~~~~el~~~~~el~~L~~~Lee 1122 (1733)
=.-.....|...+...+..+..+...+..........=..+..+.+++..
T Consensus 174 PYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~ 223 (239)
T PF05276_consen 174 PYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHE 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 265
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=27.11 E-value=9.6e+02 Score=27.22 Aligned_cols=36 Identities=14% Similarity=0.331 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 979 LEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANV 1014 (1733)
Q Consensus 979 L~kl~~el~~l~~klee~~~~ieeLee~l~kle~~l 1014 (1733)
|+=+..++.+....+......|-.|...++.....+
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l 47 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAEL 47 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333444444443343333344444444444444443
No 266
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.03 E-value=6.5e+02 Score=25.20 Aligned_cols=8 Identities=13% Similarity=0.314 Sum_probs=3.7
Q ss_pred HHHHHhHH
Q 000277 661 LQTMQSLL 668 (1733)
Q Consensus 661 ~~~l~d~l 668 (1733)
|..+|..+
T Consensus 49 y~~VG~vf 56 (105)
T cd00632 49 YKLVGNVL 56 (105)
T ss_pred HHHhhhHH
Confidence 44444444
No 267
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=26.89 E-value=1.5e+03 Score=29.33 Aligned_cols=26 Identities=12% Similarity=0.356 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 745 FQDRENLKLQLDEKNSEIEKLKLNLQ 770 (1733)
Q Consensus 745 ~~el~~l~~~ieel~~eie~lk~ei~ 770 (1733)
..++..++..++--..+|..+..++.
T Consensus 47 ~~el~qvr~~~~~Q~seL~~l~~ev~ 72 (531)
T PF15450_consen 47 LRELLQVRARVQLQDSELMQLRQEVK 72 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554
No 268
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=26.55 E-value=1.6e+03 Score=30.83 Aligned_cols=18 Identities=22% Similarity=0.171 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000277 972 GAAAVVELEQVREEFASQ 989 (1733)
Q Consensus 972 k~~le~eL~kl~~el~~l 989 (1733)
..-+..++..++.++...
T Consensus 269 ~~fL~~qL~~l~~~L~~a 286 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQA 286 (726)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444443333333
No 269
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=25.93 E-value=1e+03 Score=27.23 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=17.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 1106 LADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKL 1148 (1733)
Q Consensus 1106 l~~~~~el~~L~~~Lee~~~~le~Le~e~k~l~~Ei~~L~~~l 1148 (1733)
++...+.+.........+..+.+.+..+..++-.+.+.|++++
T Consensus 167 l~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 167 LEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444444444444444433
No 270
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.60 E-value=6.8e+02 Score=31.99 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 699 LRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMA 737 (1733)
Q Consensus 699 l~~L~~el~~l~~el~~l~~el~~~e~k~~~lre~l~~~ 737 (1733)
++.+..++..+..+-..+..+-+++..+...+..++..+
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a 106 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA 106 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 333444444444444445555555555555555555433
No 271
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=25.49 E-value=6.9e+02 Score=25.00 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000277 849 IASYINECHDTKTQLEQELGNV 870 (1733)
Q Consensus 849 l~~~i~~Le~~l~ele~ei~~l 870 (1733)
+...+..+..++..+...+.+.
T Consensus 11 l~~~~~~l~~~~~~l~~~~~E~ 32 (105)
T cd00632 11 LQQQLQAYIVQRQKVEAQLNEN 32 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333333
No 272
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=25.11 E-value=9.9e+02 Score=26.69 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHhHHHHHHHHH
Q 000277 1120 LLKAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGTIGSLESRSVELIGHL 1173 (1733)
Q Consensus 1120 Lee~~~~le~Le~e~k~l~~Ei~~L~~~l~kl~~Ele~~~~~le~~~~el~~~l 1173 (1733)
..-+..+++.....|..|..++..++..+..+.+++...-..+......+.+++
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~ 136 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYL 136 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455566666666667777777777666666666555555544444444433
No 273
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.05 E-value=1e+03 Score=26.74 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000277 1130 LEGEKRISDQEVSALNSKLN 1149 (1733)
Q Consensus 1130 Le~e~k~l~~Ei~~L~~~l~ 1149 (1733)
+......+...+...++.+.
T Consensus 140 ~~~~~~~~~~~anrwTDNI~ 159 (188)
T PF03962_consen 140 LKEEIKIAKEAANRWTDNIF 159 (188)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 33333333333333333333
No 274
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=24.99 E-value=1.4e+03 Score=28.53 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 000277 281 STYMLIEKYNQMLYEIYQLGQC 302 (1733)
Q Consensus 281 g~~~~~Ek~~e~~~Eie~L~~~ 302 (1733)
..--+..++-+...+|+.....
T Consensus 441 aqG~LVqkIlETkke~e~~g~~ 462 (583)
T KOG3809|consen 441 AQGALVQKILETKKEIEDGGGQ 462 (583)
T ss_pred hhhhHHHHHHHHHHHHHhcCCC
Confidence 3345666777777777655443
No 275
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=24.94 E-value=2.4e+02 Score=30.60 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=57.2
Q ss_pred HhhHHHHHHhhcCCccccccCccchhhhHHHHHHHHHHHhhccccchhHHHHhhhhhhhhhhhhhhhhhhHHhhHhhhhc
Q 000277 1615 TFGLEKIVNMLESNEFVVNQKSSGSKGLLAVLEKQIMTLHSDAENSKSKVQELGNKLLESQKEVDDLTTKVDLLEESLHG 1694 (1733)
Q Consensus 1615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1694 (1733)
-.++=++..|||=..---+.-|..-..+=+.+ +.+-.+.-+.|+++++.-.+.-.|+.-+.-|++|.++||-|.|-+-.
T Consensus 58 ~l~~~kl~sylGleKD~Se~~S~~K~Pf~~~~-k~~~~ifkegg~d~~k~~~~l~~L~e~snki~kLe~~~k~L~d~Iv~ 136 (163)
T PF03233_consen 58 WLKLSKLLSYLGLEKDPSEGLSKSKSPFESFF-KDLSKIFKEGGGDKQKQLKLLPTLEEISNKIRKLETEVKKLKDNIVT 136 (163)
T ss_pred HHHHHHHHHHhccccCCccccccCCCcHHHHH-HHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhccc
Confidence 45666777999965332332222222222233 77788888999999999899999999999999999999999987543
No 276
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=24.40 E-value=6.9e+02 Score=25.18 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 709 LKEEKESQQKDLERSEEKSALLREKLSM 736 (1733)
Q Consensus 709 l~~el~~l~~el~~~e~k~~~lre~l~~ 736 (1733)
+.....-|.+.+-.-+.+...|++.|..
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ 37 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKE 37 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444455554443
No 277
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.03 E-value=1.7e+03 Score=28.91 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 399 ALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQA 434 (1733)
Q Consensus 399 ~l~~~~~~Lk~elee~~~ele~~~~ele~~~~~le~ 434 (1733)
.+..+...|+++++++..+...++.++......+..
T Consensus 40 ~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q 75 (772)
T KOG0999|consen 40 ELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQ 75 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555444444443
No 278
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=23.96 E-value=1.2e+03 Score=27.42 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000277 760 SEIEKLKLNLQEQESTISECRDQINRLSN 788 (1733)
Q Consensus 760 ~eie~lk~ei~~~e~el~~le~el~~L~~ 788 (1733)
..+..+...+..++..+.....++..|.+
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 279
>PRK11519 tyrosine kinase; Provisional
Probab=23.44 E-value=2e+03 Score=29.73 Aligned_cols=6 Identities=0% Similarity=0.202 Sum_probs=2.2
Q ss_pred HHHHHh
Q 000277 1207 VEDIRI 1212 (1733)
Q Consensus 1207 iedL~~ 1212 (1733)
+-.|..
T Consensus 544 a~nLA~ 549 (719)
T PRK11519 544 CANLAA 549 (719)
T ss_pred HHHHHH
Confidence 333333
No 280
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.78 E-value=1.8e+02 Score=30.60 Aligned_cols=42 Identities=29% Similarity=0.393 Sum_probs=33.6
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Q 000277 166 APLHELLSECSQFLRSALEERSKNESAIREINAVLYKKDREIEHLNAKVAEIL 218 (1733)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~ 218 (1733)
..++++++.+.-+. ..+++|...+..+|-||.+|..+|++..
T Consensus 80 a~~~e~qsli~~yE-----------~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 80 AEIQEQQSLIKTYE-----------IVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred cchHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665555444 6689999999999999999999999985
No 281
>PRK04325 hypothetical protein; Provisional
Probab=22.57 E-value=2.6e+02 Score=26.38 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000277 166 APLHELLSECSQFLRSALEERSKNESAIREINAVLYKKDREIEHLNAKVA 215 (1733)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~ 215 (1733)
...+.|...+..|. .++.-.+..|..||.+|..-.++|.+|.+.|.
T Consensus 2 ~~~~~~e~Ri~~LE----~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~ 47 (74)
T PRK04325 2 DAVQEMEDRITELE----IQLAFQEDLIDGLNATVARQQQTLDLLQAQLR 47 (74)
T ss_pred CcchhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 282
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=22.30 E-value=8.1e+02 Score=24.68 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 980 EQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFV 1044 (1733)
Q Consensus 980 ~kl~~el~~l~~klee~~~~ieeLee~l~kle~~l~~l~ee~~ee~~~~~~~lE~el~~lq~Ele 1044 (1733)
++++.+..-|++-+-+.......|.+.+......+..+..+ ++.+.-....+.+....++.++.
T Consensus 8 sKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE-~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQE-NDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333333333333343333333333333 33333333344444444444433
No 283
>PF15456 Uds1: Up-regulated During Septation
Probab=22.17 E-value=9.1e+02 Score=25.22 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=9.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 000277 937 FAEACASRKSLEDEMSVAKNNMS 959 (1733)
Q Consensus 937 leEl~~~~~~L~~~l~~le~el~ 959 (1733)
++++.+.+..+...+..++..+.
T Consensus 24 Ve~LKkEl~~L~~R~~~lr~kl~ 46 (124)
T PF15456_consen 24 VEELKKELRSLDSRLEYLRRKLA 46 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 284
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.34 E-value=4.7e+02 Score=23.27 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 523 FSDLESRLAWLKESFYQAKDEANVLLDQLNR 553 (1733)
Q Consensus 523 ~~ele~ei~~L~~~~~~~~~e~~~l~~El~~ 553 (1733)
+.++++++..+...+..++.+...++..++.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~ 32 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEK 32 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666555555555554433
No 285
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.51 E-value=1.3e+03 Score=26.30 Aligned_cols=8 Identities=13% Similarity=0.297 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000277 853 INECHDTK 860 (1733)
Q Consensus 853 i~~Le~~l 860 (1733)
|+.++..+
T Consensus 32 ird~e~~l 39 (221)
T PF04012_consen 32 IRDMEEQL 39 (221)
T ss_pred HHHHHHHH
Confidence 33333333
No 286
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.44 E-value=1.5e+03 Score=26.98 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 900 DKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVEL 979 (1733)
Q Consensus 900 ~~i~~L~ke~~~le~~~~el~~eLe~~~~el~~l~~~leEl~~~~~~L~~~l~~le~el~~L~e~lee~q~~k~~le~eL 979 (1733)
....++..++......+-++-..=-.+...+......--++..--..+...+.....++...+..+..+...-..+...|
T Consensus 120 k~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KI 199 (267)
T PF10234_consen 120 KAARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKI 199 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000277 980 EQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREE 1042 (1733)
Q Consensus 980 ~kl~~el~~l~~klee~~~~ieeLee~l~kle~~l~~l~ee~~ee~~~~~~~lE~el~~lq~E 1042 (1733)
++...++....+.+..+..-.-..-+...+++..++.+... +-..=....-++..+......
T Consensus 200 ekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~-Y~~kfRNl~yLe~qle~~~~~ 261 (267)
T PF10234_consen 200 EKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEI-YVEKFRNLDYLEHQLEEYNRR 261 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHH
No 287
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=20.39 E-value=6.9e+02 Score=23.10 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000277 1294 LQTTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLLSACIDATRELQF 1352 (1733)
Q Consensus 1294 ~~~~e~e~~~~~e~~e~L~~ql~~le~~k~~LE~~i~~Le~el~e~~~~~~~~~~e~~~ 1352 (1733)
++.+++.+..+...++.|+..+..+......+.++...|...++...+.++..+..+++
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 288
>PLN02939 transferase, transferring glycosyl groups
Probab=20.05 E-value=2.6e+03 Score=29.72 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=24.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000277 782 QINRLSNDLDCIRKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRI 831 (1733)
Q Consensus 782 el~~L~~~le~l~~le~ei~~lk~e~eele~~l~e~e~~l~~l~~~i~el 831 (1733)
.+.-+...+..+......+..+..+..-+...+.+++.++...+..+..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (977)
T PLN02939 241 DIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKL 290 (977)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 33333444444444444455555555555555666655554444444333
Done!