Query 000277
Match_columns 1733
No_of_seqs 725 out of 2108
Neff 7.6
Searched_HMMs 13730
Date Tue Mar 26 17:00:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000277.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_56-60//hhsearch_scop/000277hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gxja_ d.215.1.1 (A:) Smc hin 29.2 6.4 0.00047 10.8 1.9 90 604-695 16-129 (161)
2 d1j5wa_ d.104.1.1 (A:) Glycyl- 4.4 71 0.0052 2.6 -0.3 10 64-73 158-167 (281)
3 d1w1wa_ c.37.1.12 (A:) Smc hea 4.4 83 0.006 2.1 3.1 48 254-305 141-197 (427)
4 d3chbd_ b.40.2.1 (D:) Cholera 2.8 1.4E+02 0.01 0.2 0.6 27 1409-1435 48-74 (103)
5 d1dd3a1 a.108.1.1 (A:1-57) Rib 2.3 1.7E+02 0.012 -0.3 -0.2 27 1676-1702 13-39 (57)
6 d1eq1a_ a.63.1.1 (A:) Apolipop 2.0 2.2E+02 0.016 -1.2 3.9 151 1221-1440 12-162 (166)
7 d1seta1 a.2.7.1 (A:1-110) Sery 1.8 2.5E+02 0.018 -1.7 9.7 69 851-919 28-97 (110)
8 d2e2aa_ a.7.2.1 (A:) Enzyme II 1.8 2.5E+02 0.018 -1.7 1.3 21 1646-1666 6-26 (104)
9 d1fxkc_ a.2.5.1 (C:) Prefoldin 1.7 2.5E+02 0.018 -1.7 13.9 85 936-1020 2-131 (133)
10 d1a0ia1 b.40.4.6 (A:241-349) A 1.7 2.5E+02 0.018 -1.7 0.8 25 1674-1698 44-88 (109)
No 1
>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]}
Probab=29.19 E-value=6.4 Score=10.76 Aligned_cols=90 Identities=12% Similarity=0.043 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH---------HCCCCCCHHHHHHHHHHHHHH--C--C--CCCCC--CCCC-------HH
Q ss_conf 6679999998618986300111---------103688258899999999861--0--2--25688--7453-------48
Q 000277 604 KDHMVRVLLKESGTSMEDQDVA---------SQTSSDPTAIISKCIGKIREQ--T--C--ASSDT--SGAD-------SE 659 (1733)
Q Consensus 604 ~~~l~~~i~el~~~~i~~y~~A---------~~~~vet~~~a~~~i~~Lk~~--~--~--~l~k~--~~~~-------~e 659 (1733)
...+.|.++++..++ .+|..| ..++|++..+|..|+++||.+ + + |+++- .... +.
T Consensus 16 ~~gv~G~v~dli~v~-~~y~~Ave~aLG~~l~~vVV~~~~~A~~~i~~lk~~~~Gr~tfipl~~i~~~~~~~~~~~~~~~ 94 (161)
T d1gxja_ 16 FPGLVDVVSNLIEVD-EKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERG 94 (161)
T ss_dssp CTTEEEEHHHHCBCC-GGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCCCCCCCTTGGGSTT
T ss_pred CCCCEEEHHHHCCCC-HHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 799558788827608-8799999999636540599787999999999974325861899965543465321110003777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889998688863988899999879989999999999
Q 000277 660 MLQTMQSLLYVSYQELILCQQILEEDALVRLQLNDL 695 (1733)
Q Consensus 660 ~~~~l~d~l~~l~~E~~~l~~~le~~~~l~~~~~~l 695 (1733)
...++.+.+.+ +.++..+...++.++.+..+++.+
T Consensus 95 ~v~~~~dlV~~-~~~~~~~~~~llg~~~iv~~l~~A 129 (161)
T d1gxja_ 95 FVGYAVDLVKF-PSDLEVLGGFLFGNSVVVETLDDA 129 (161)
T ss_dssp EEEEHHHHCBC-CGGGHHHHHHHHTTCEEESCHHHH
T ss_pred CCHHHHHHCCC-CHHHHHHHHHHCCCEEEECCHHHH
T ss_conf 33328874338-888999999985998999999999
No 2
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}
Probab=4.43 E-value=71 Score=2.60 Aligned_cols=10 Identities=30% Similarity=0.488 Sum_probs=3.9
Q ss_pred CCCCHHHHHH
Q ss_conf 8630146774
Q 000277 64 SYSEENIVVS 73 (1733)
Q Consensus 64 ~~~~~~~~~~ 73 (1733)
.|.-|-+.|-
T Consensus 158 TYGLERiaMy 167 (281)
T d1j5wa_ 158 TYGLERIAMY 167 (281)
T ss_dssp EEEHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 4328999999
No 3
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.39 E-value=83 Score=2.09 Aligned_cols=48 Identities=15% Similarity=0.340 Sum_probs=24.6
Q ss_pred HHHHHHHCCCCCC-----CCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 5332210134554-----5822----12530323412889999999999999999836238
Q 000277 254 LSYLAMVVYQGEL-----MDSS----ISGKISHVEQSTYMLIEKYNQMLYEIYQLGQCLSK 305 (1733)
Q Consensus 254 l~~~~nvVlQGdv-----m~~~----~~~~i~~lE~g~~~~~Ek~~e~~~Eie~L~~~l~e 305 (1733)
..+...+|+||+| |+|. .+..+. ++..|...+......++.....+.+
T Consensus 141 ~~~~~~~i~q~~~~~~~~~~~~~~~~~le~~~----~~~~~~~~~~~~~~~~~~~~~~~~e 197 (427)
T d1w1wa_ 141 IKAKNFLVFQGDVEQIAAQSPVELSRMFEEVS----GSIQYKKEYEELKEKIEKLSKSATE 197 (427)
T ss_dssp TTTCTTEECTTCTTHHHHSCHHHHHHTC---------------------------------
T ss_pred CCCCCCEECHHHHHHHHHCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78865242204566666406531223222233----3321112223233312221112220
No 4
>d3chbd_ b.40.2.1 (D:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
Probab=2.81 E-value=1.4e+02 Score=0.23 Aligned_cols=27 Identities=7% Similarity=0.041 Sum_probs=18.5
Q ss_pred HHHHCCHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 996198046553210050110688875
Q 000277 1409 ARKAQPLAKLFEMTSTVAASTIQDLQK 1435 (1733)
Q Consensus 1409 l~~eq~~~~~le~~k~~le~~ikeLq~ 1435 (1733)
+.-|-|.|||++.+|+.+|+.-+-|.+
T Consensus 48 fqvevpgsqh~~sqk~~~ermkdtlr~ 74 (103)
T d3chbd_ 48 FQVEVPGSQHIDSQKKAIERMKDTLRI 74 (103)
T ss_dssp EEECCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999668610134435079998888999
No 5
>d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=2.31 E-value=1.7e+02 Score=-0.26 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 455643356785575320357880234
Q 000277 1676 KEVDDLTTKVDLLEESLHGRRDQPEIV 1702 (1733)
Q Consensus 1676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1702 (1733)
.+|-||+--||.+||.|-.-++.|-++
T Consensus 13 ~tv~El~ELvKalEekfGVsAaaPV~~ 39 (57)
T d1dd3a1 13 LTVSELAELVKKLEDKFGVTAAAPVAV 39 (57)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 529999999999999868540002776
No 6
>d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId: 7130]}
Probab=1.96 E-value=2.2e+02 Score=-1.24 Aligned_cols=151 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11311011121336444444346644553035535898885998987564465448676641469999999998877999
Q 000277 1221 VTEGNSDVTKSFMDDIDNIEMYDNEVTVLDADDITSCFRKTAEGFQMRTKILTDTFEHFSVSIDEFIAALLRKLQTTRDE 1300 (1733)
Q Consensus 1221 Im~~a~~~kKkle~dlN~iEl~~~~~~~~~~d~i~k~~rk~~~~~~~r~~~l~~~l~e~~~~~dq~i~~~~~~~~~~e~e 1300 (1733)
+|+-+....++|...+|.+.-..++..-...-. ...++...++......+++.+.+...-..+.+..+.+.+..+.++
T Consensus 12 ~~~~a~e~~~t~~eq~~~~~n~knt~~~~~a~k--e~a~~v~e~~~~~~~~l~~~~~Ea~~~a~dav~qa~~nle~~Aee 89 (166)
T d1eq1a_ 12 MEKHAKEFQKTFSEQFNSLVNSKNTQDFNKALK--DGSDSVLQQLSAFSSSLQGAISDANGKAKEALEQARQNVEKTAEE 89 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSSCSSHHHH--HHHHHHHHHHHHHHHHHHHHHTTCSSTHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999988429999999886253999889889--877889999999999999888888878999999877899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99998632637898983999899999999999999999999999999997689987414988623321121100688985
Q 000277 1301 VVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLLSACIDATRELQFEVKNNLLELNSVPELENLNRGFSQPESK 1380 (1733)
Q Consensus 1301 ~~~~~e~~e~L~~ql~~le~~k~~lE~~i~~Le~el~e~~~~~~~~~~e~~~e~~~~ll~~~e~~eLesl~~~i~~~k~k 1380 (1733)
+..+.+++..-..++. ..+...+..+.........+....+...
T Consensus 90 lrk~~e~ikq~a~d~~-------------~~~~~~~~~~vqe~~~~ake~~~~l~E~----------------------- 133 (166)
T d1eq1a_ 90 LRKAHPDVEKEANAFK-------------DKLQAAVQTTVQESQKLAKEVASNMEET----------------------- 133 (166)
T ss_dssp GGGCSHHHHHTCSSSH-------------HHHHHHHHHHHHHHHHHHHHHHSCCCSS-----------------------
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_conf 9881599999999999-------------8878999999999988888888899999-----------------------
Q ss_pred CCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCH
Q ss_conf 555664100001480207999999999999619804655321005011068887511015
Q 000277 1381 VDGDDTTDHQKSLHGNRYHEAAENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDT 1440 (1733)
Q Consensus 1381 le~~i~~l~~~~~~~~~~~~~a~~L~~el~~eq~~~~~le~~k~~le~~ikeLq~rLdEa 1440 (1733)
+.++...+..... .+..++.+++.|+.++
T Consensus 134 --------------n~kl~~~~K~~~~-----------------e~~kq~~evq~r~~eA 162 (166)
T d1eq1a_ 134 --------------NKKLAPKIKQAYD-----------------DFVKHAEEVQKKLHEA 162 (166)
T ss_dssp --------------CGGGHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
T ss_conf --------------9997788888999-----------------9999999999998744
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=1.76 E-value=2.5e+02 Score=-1.66 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989999999999999998799999999999999-999999999999999999999999999999959999
Q 000277 851 SYINECHDTKTQLEQELGNVKQEASALASELAE-TQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNV 919 (1733)
Q Consensus 851 ~~i~~Le~~l~ele~ei~~l~~~l~el~~el~k-l~~e~~~le~eLeele~~is~L~ke~~~le~q~~el 919 (1733)
..+-.+......+..+++.++...+.+...+.+ .......+..+...+...+..+......++..+..+
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999998874132369999988889999999999999999999999
No 8
>d2e2aa_ a.7.2.1 (A:) Enzyme IIa from lactose specific PTS, IIa-lac {Lactococcus lactis [TaxId: 1358]}
Probab=1.75 E-value=2.5e+02 Score=-1.68 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCHHHHHH
Q ss_conf 999999884024441247877
Q 000277 1646 LEKQIMTLHSDAENSKSKVQE 1666 (1733)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~ 1666 (1733)
++-.++.+++-||++||.+-|
T Consensus 6 ~e~~~f~iI~~aG~Ars~~~e 26 (104)
T d2e2aa_ 6 MTLLGFEIVAYAGDARSKLLE 26 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999998889999999
No 9
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=1.74 E-value=2.5e+02 Score=-1.72 Aligned_cols=85 Identities=12% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q ss_conf 999999989869999999998899999999999999999999--------------------------------------
Q 000277 936 KFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVV-------------------------------------- 977 (1733)
Q Consensus 936 ~leE~~~~~~~L~~~l~~le~el~~L~eqlee~q~~~~~le~-------------------------------------- 977 (1733)
.+.++...+..+...+..+...+..+...+.+....+..+..
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~ 81 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA 81 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCCCEEEEECCCEE
T ss_conf 48999999999999999999999999999999999999999762278970799747853888786389864888359823
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------9999999999999789999999999999999999999998898
Q 000277 978 -------ELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQ 1020 (1733)
Q Consensus 978 -------eL~kl~~el~~l~~klee~~~~ieeLee~l~~le~~l~~l~ee 1020 (1733)
-+.-+...+..+...+..+...+..+...+..+...++.+...
T Consensus 82 vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a 131 (133)
T d1fxkc_ 82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55059999999999999999999999999999999999999999999873
No 10
>d1a0ia1 b.40.4.6 (A:241-349) ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: 10760]}
Probab=1.73 E-value=2.5e+02 Score=-1.74 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH--------------------HHHHCCCCC
Q ss_conf 2345564335678557--------------------532035788
Q 000277 1674 SQKEVDDLTTKVDLLE--------------------ESLHGRRDQ 1698 (1733)
Q Consensus 1674 ~~~~~~~~~~~~~~~~--------------------~~~~~~~~~ 1698 (1733)
|+...|+++++||... +.|++|++|
T Consensus 44 s~~lmdefT~~v~~~~~~~~~~~~~~~~~d~~~~~~~~y~G~~~e 88 (109)
T d1a0ia1 44 SRALMDEFTETVKEATLSQWGFFSPYGIGDNDACTINPYDGWACQ 88 (109)
T ss_dssp CSHHHHHHHHHHHHHHTTTSCCC--------CCCCCCTTTTCEEE
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 899999998765540344445432212367420145665666899
Done!