BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000278
(1731 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 128/263 (48%), Gaps = 27/263 (10%)
Query: 309 WLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHR 368
W + +++ +A ++ + + +D Y +V+ I G +S V++GV+ K+V H
Sbjct: 156 WSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP 215
Query: 369 RMASKMEKPRLLILGGALEYQRVSNLL-------SSFDTLLQQEMDHLKMAVAKIEAHHP 421
RM ++ PR+++L +LEY++ + F +LQ E ++++ I P
Sbjct: 216 RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKP 275
Query: 422 DVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIVPSIDHISSPKLGYCE 481
DV++ EK +S AQ YL+ N++ + R+ RI+R GA+IV S P+
Sbjct: 276 DVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIV------SRPE----- 324
Query: 482 KFHVERFLEDLGSAGQGGKKLVKT----LMFFEGCPKPLGCTILLRGADGDELKKVKHVV 537
E ED+G+ G G ++ K F C P CTILLRGA + L +V+ +
Sbjct: 325 ----ELREEDVGT-GAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNL 379
Query: 538 QYGIFAAYHLAVETSFLADEGAS 560
Q + ++ ++ + GAS
Sbjct: 380 QDAMQVCRNVLLDPQLVPGGGAS 402
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 87.4 bits (215), Expect = 6e-17, Method: Composition-based stats.
Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 22/222 (9%)
Query: 352 ESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVS-----NLLS--SFDTLLQQ 404
ES +V+GVV K V H RM ++E ++ ++ ALE ++ N+ S + L+Q
Sbjct: 212 ESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQ 271
Query: 405 EMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQ 464
E LK V I +V+ V+K + AQ YL + V ++ +E++++ TGA+
Sbjct: 272 EEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAK 331
Query: 465 IVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRG 524
IV ++ ++ LGY E +E+ AG+ ++F EGC P TIL+RG
Sbjct: 332 IVTNVKDLTPEDLGYAE------VVEERKLAGE-------NMIFVEGCKNPKAVTILIRG 378
Query: 525 ADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELPM 566
+ +V+ ++ + + + + L GA PE+ +
Sbjct: 379 GTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGA--PEIEL 418
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 87.4 bits (215), Expect = 6e-17, Method: Composition-based stats.
Identities = 78/287 (27%), Positives = 132/287 (45%), Gaps = 37/287 (12%)
Query: 302 DEDDEESWLEI----ITSLSWEA-----ATLLKPDMSKGGGMDPGGYV------KVKCIA 346
D DDEE+ L+I IT + E+ A L + + G YV K + A
Sbjct: 147 DPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKA 206
Query: 347 SGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVS-----NLLS--SFD 399
ES +V+GVV K V H RM ++E ++ ++ ALE ++ N+ S
Sbjct: 207 GEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLM 266
Query: 400 TLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISR 459
+ L+QE LK V I +V+ V+K + AQ YL + V ++ +E++++
Sbjct: 267 SFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAK 326
Query: 460 CTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCT 519
TGA+IV ++ ++ LGY E +E+ AG+ ++F EGC P T
Sbjct: 327 ATGAKIVTNVKDLTPEDLGYAE------VVEERKLAGE-------NMIFVEGCKNPKAVT 373
Query: 520 ILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELPM 566
IL+RG + +V+ ++ + + + + L GA PE+ +
Sbjct: 374 ILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGA--PEIEL 418
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 87.4 bits (215), Expect = 7e-17, Method: Composition-based stats.
Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 22/222 (9%)
Query: 352 ESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVS-----NLLS--SFDTLLQQ 404
ES +V+GVV K V H RM ++E ++ ++ ALE ++ N+ S + L+Q
Sbjct: 212 ESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQ 271
Query: 405 EMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQ 464
E LK V I +V+ V+K + AQ YL + V ++ +E++++ TGA+
Sbjct: 272 EEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAK 331
Query: 465 IVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRG 524
IV ++ ++ LGY E +E+ AG+ ++F EGC P TIL+RG
Sbjct: 332 IVTNVKDLTPEDLGYAE------VVEERKLAGE-------NMIFVEGCKNPKAVTILIRG 378
Query: 525 ADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELPM 566
+ +V+ ++ + + + + L GA PE+ +
Sbjct: 379 GTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGA--PEIEL 418
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 87.0 bits (214), Expect = 8e-17, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 27/185 (14%)
Query: 352 ESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVSNLL-------SSFDTLLQQ 404
+S V++GV+ K+V H RM ++ PR+++L +LEY++ + F +LQ
Sbjct: 3 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 62
Query: 405 EMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQ 464
E +++ I PDV++ EK +S AQ YL+ NV+ + R+ RI+R GA+
Sbjct: 63 EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 122
Query: 465 IVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKT----LMFFEGCPKPLGCTI 520
IV S P E ED G G ++ K F C P CTI
Sbjct: 123 IV------SRP----------EELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTI 166
Query: 521 LLRGA 525
LLRGA
Sbjct: 167 LLRGA 171
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 21/211 (9%)
Query: 309 WLEIITSLSWEAATLLKPDMSKGGGMDPG------GYVKVKCIASGRRCESMVVKGVVCK 362
W E + L+ +A ++ D+ + +P YV+V+ I G +S V+KGV+
Sbjct: 167 WSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLN 226
Query: 363 KNVAHRRMASKMEKPRLLILGGALEYQRVSNLLS-------SFDTLLQQEMDHLKMAVAK 415
K+V H +M+ +E PR+++L LEY++ + + ++ +LQ E + +++ +
Sbjct: 227 KDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQ 286
Query: 416 IEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIVPSIDHISSP 475
I A P +++ EK VS AQ YLL S++ ++ RI+R TGA IV ++ +
Sbjct: 287 ILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKES 346
Query: 476 KLGY-CEKFHVER-------FLEDLGSAGQG 498
+G C F VE FL++ G G
Sbjct: 347 DVGTNCGLFKVEMIGDEYFSFLDNCKEPGSG 377
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 80.1 bits (196), Expect = 9e-15, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 20/187 (10%)
Query: 346 ASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVS-------NLLSSF 398
A G ++ +V G+V K V H M ++E ++ ++ +LE ++ N +
Sbjct: 213 AGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEIRINDPTQM 272
Query: 399 DTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERIS 458
L +E + +K V KI A +V++ +K + AQ YL K V V ++ LE+++
Sbjct: 273 QKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLA 332
Query: 459 RCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGC 518
R TG ++V +ID IS LGY + ED ++F EG P
Sbjct: 333 RATGGRVVSNIDEISEQDLGYASLIEERKVGED-------------KMVFVEGAKNPKSI 379
Query: 519 TILLRGA 525
+IL+RG
Sbjct: 380 SILIRGG 386
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 74.7 bits (182), Expect = 4e-13, Method: Composition-based stats.
Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 20/234 (8%)
Query: 340 VKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVS------- 392
+KV G ++ + G+V K H +M ++ ++ ++ ALE ++
Sbjct: 197 IKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQI 256
Query: 393 NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRP 452
+ S L QE + K V KI+ +V+L +K + AQ YL + + V ++
Sbjct: 257 SDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKS 316
Query: 453 LLERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGC 512
+E++++ TGA+IV +D ++ LG E + +D + F GC
Sbjct: 317 DMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDD-------------RMTFVMGC 363
Query: 513 PKPLGCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELPM 566
P +IL+RG + +V+ + I + FL GA EL M
Sbjct: 364 KNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAM 417
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 70.1 bits (170), Expect = 9e-12, Method: Composition-based stats.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 352 ESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRV---SNLL----SSFDTLLQQ 404
++ ++ G++ K H M ++ ++ +L LE ++ +NL S L Q
Sbjct: 210 DTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQ 269
Query: 405 EMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQ 464
E + L+ V KI++ +V++ +K + AQ YL + V ++ ++++++ TGA
Sbjct: 270 EENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGAS 329
Query: 465 IVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRG 524
IV +ID ISS LG E+ + ED + F GC P +IL+RG
Sbjct: 330 IVSTIDEISSSDLGTAERVEQVKVGEDY-------------MTFVTGCKNPKAVSILVRG 376
>pdb|2YBX|A Chain A, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate
4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate
4-Kinase Type-2 Alpha
Length = 394
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 1450 FEALRKICCPSELDYVRSLSRCKKW-GAKGGKSNVFFAKTLDDRFIIKQVTKTELESFIK 1508
F LR+ + D+ SL+R +S F + D R+IIK +T ++
Sbjct: 87 FRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHN 146
Query: 1509 FAPEYFKYLSESISTGSPTCLAKILGIYQVTTKHLKGGRESKMDVLVMENLLFSR-SVTQ 1567
+Y +Y+ E T L + LG+Y++ ++ + V+V N+ R SV +
Sbjct: 147 ILKKYHQYIVECHGI---TLLPQFLGMYRLNVDGVE------IYVIVTRNVFSHRLSVYR 197
Query: 1568 LYDLKGSSRSRYNPDSSGSNKV--LLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTAFL 1625
YDLKGS+ +R D + ++ L D + I I++ + K++ + D FL
Sbjct: 198 KYDLKGSTVAREASDKEKAKELPTLKDNDFINE--GQKIYIDDNNKKVFLEKLKKDVEFL 255
Query: 1626 ASIDVMDYSLLVGVDE 1641
A + +MDYSLLVG+ +
Sbjct: 256 AQLKLMDYSLLVGIHD 271
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 108/240 (45%), Gaps = 24/240 (10%)
Query: 307 ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVA 366
E++ E +++L+ +A + + G ++ +K++ A G +S ++ G+V K +
Sbjct: 118 EAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERS 177
Query: 367 HRRMASKMEKPRLLILGGALEYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAH 419
H M K+E ++L+L +E+++ L QE ++ K+ A
Sbjct: 178 HPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIAS 237
Query: 420 HPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIVPSIDHISSPKLGY 479
+V+ +K + AQ Y+ + V ++ L+R+S+ TGA I+ +D I++
Sbjct: 238 GANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITT----- 292
Query: 480 CEKFHVERFLEDLGSAGQGGKKLVK--TLMFFEGCPKPLGCTILLRGADGDELKKVKHVV 537
ED+G+AG +K V+ + + GC T+LL G + + H +
Sbjct: 293 ----------EDVGTAGLVEEKEVRGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHAL 342
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 40 RVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFK 99
RVC+ C +FT NR+HHCR CG+VFCGQCT+ P P + +++RVC+ CF
Sbjct: 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIE------KEVRVCDGCFA 215
Query: 100 QWQLG 104
Q G
Sbjct: 216 ALQRG 220
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 1450 FEALRKICCPSELDYVRSLSRCKKWGAKG-GKSNVFFAKTLDDRFIIKQVTKTELESFIK 1508
F LR+ + DY S++R + G+ F T D RF+IK V+ ++
Sbjct: 103 FRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHN 162
Query: 1509 FAPEYFKYLSESISTGSPTCLAKILGIYQVTTKHLKGGRESKMDVLVMENLLFSR-SVTQ 1567
+Y +++ E T L + LG+Y++T G E+ M +V N+ R +V +
Sbjct: 163 ILKKYHQFIVECHGN---TLLPQFLGMYRLTVD----GVETYM--VVTRNVFSHRLTVHR 213
Query: 1568 LYDLKGSSRSRYNPDSSGSNKV--LLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTAFL 1625
YDLKGS+ +R D + + D + + + VG ++K+ + D FL
Sbjct: 214 KYDLKGSTVAREASDKEKAKDLPTFKDNDFLNE--GQKLHVGEESKKNFLEKLKRDVEFL 271
Query: 1626 ASIDVMDYSLLVGVDE 1641
A + +MDYSLLVG+ +
Sbjct: 272 AQLKIMDYSLLVGIHD 287
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/196 (23%), Positives = 95/196 (48%), Gaps = 26/196 (13%)
Query: 352 ESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQ--------RVSNLLSSFDTLLQ 403
++ ++KGV+ K +M K+ ++ +L A+E + R+++ + ++
Sbjct: 199 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDP-AKLMEFIE 257
Query: 404 QEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGA 463
QE LK VA+I+A +VL +K + AQ YL + + ++ +E++++ TGA
Sbjct: 258 QEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGA 317
Query: 464 QIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVK--TLMFFEGCPKPLGCTIL 521
++ +I +S+ +DLG AG ++ + +++F E C P T+L
Sbjct: 318 NVITNIKDLSA---------------QDLGDAGLVEERKISGDSMIFVEECKHPKAVTML 362
Query: 522 LRGADGDELKKVKHVV 537
+RG +++V V
Sbjct: 363 IRGTTEHVIEEVARAV 378
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/196 (23%), Positives = 95/196 (48%), Gaps = 26/196 (13%)
Query: 352 ESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQ--------RVSNLLSSFDTLLQ 403
++ ++KGV+ K +M K+ ++ +L A+E + R+++ + ++
Sbjct: 205 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDP-AKLMEFIE 263
Query: 404 QEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGA 463
QE LK VA+I+A +VL +K + AQ YL + + ++ +E++++ TGA
Sbjct: 264 QEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGA 323
Query: 464 QIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVK--TLMFFEGCPKPLGCTIL 521
++ +I +S+ +DLG AG ++ + +++F E C P T+L
Sbjct: 324 NVITNIKDLSA---------------QDLGDAGLVEERKISGDSMIFVEECKHPKAVTML 368
Query: 522 LRGADGDELKKVKHVV 537
+RG +++V V
Sbjct: 369 IRGTTEHVIEEVARAV 384
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/196 (23%), Positives = 95/196 (48%), Gaps = 26/196 (13%)
Query: 352 ESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQ--------RVSNLLSSFDTLLQ 403
++ ++KGV+ K +M K+ ++ +L A+E + R+++ + ++
Sbjct: 199 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDP-AKLMEFIE 257
Query: 404 QEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGA 463
QE LK VA+I+A +VL +K + AQ YL + + ++ +E++++ TGA
Sbjct: 258 QEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGA 317
Query: 464 QIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVK--TLMFFEGCPKPLGCTIL 521
++ +I +S+ +DLG AG ++ + +++F E C P T+L
Sbjct: 318 NVIAAIAALSA---------------QDLGDAGLVEERKISGDSMIFVEECKHPKAVTML 362
Query: 522 LRGADGDELKKVKHVV 537
+RG +++V V
Sbjct: 363 IRGTTEHVIEEVARAV 378
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 66.2 bits (160), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/196 (23%), Positives = 95/196 (48%), Gaps = 26/196 (13%)
Query: 352 ESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQ--------RVSNLLSSFDTLLQ 403
++ ++KGV+ K +M K+ ++ +L A+E + R+++ + ++
Sbjct: 205 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDP-AKLMEFIE 263
Query: 404 QEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGA 463
QE LK VA+I+A +VL +K + AQ YL + + ++ +E++++ TGA
Sbjct: 264 QEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGA 323
Query: 464 QIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVK--TLMFFEGCPKPLGCTIL 521
++ +I +S+ +DLG AG ++ + +++F E C P T+L
Sbjct: 324 NVIAAIAALSA---------------QDLGDAGLVEERKISGDSMIFVEECKHPKAVTML 368
Query: 522 LRGADGDELKKVKHVV 537
+RG +++V V
Sbjct: 369 IRGTTEHVIEEVARAV 384
>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
Length = 392
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 16/206 (7%)
Query: 1445 YYARRFEALRKICCPSELDYVRSLSRCKKWGAKGGKSNVFFAKTLDDRFIIKQVTKTELE 1504
Y + F LR + DY+ SL+R ++G S+ F + D +IK+V+ ++
Sbjct: 74 YCPQVFRNLRDRFGIDDQDYLVSLTRNPPSESEG--SDGRFLISYDRTLVIKEVSSEDIA 131
Query: 1505 SFIKFAPEYFKYLSESISTGSPTCLAKILGIYQVTTKHLKGGRESKMDVLVMENLLFSR- 1563
Y +Y+ + T L + LG+Y+V+ + +S M LVM N+ R
Sbjct: 132 DMHSNLSNYHQYI---VKCHGNTLLPQFLGMYRVSVDN----EDSYM--LVMRNMFSHRL 182
Query: 1564 SVTQLYDLKGSSRSRYNPDSSGSNKVLLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTA 1623
V + YDLKGS SR D ++ +++ +++G + K++ + D
Sbjct: 183 PVHRKYDLKGSLVSREASDKEKVKELPTLRDMDFLNKNQKVYIGEEEKKIFLEKLKRDVE 242
Query: 1624 FLASIDVMDYSLLVGVDEENHQLVLG 1649
FL + +MDYSLL+G+ H ++ G
Sbjct: 243 FLVQLKIMDYSLLLGI----HDIIRG 264
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 62.0 bits (149), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/192 (22%), Positives = 88/192 (45%), Gaps = 32/192 (16%)
Query: 352 ESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVSNLLSSFDTLLQQEMDHLKM 411
++ ++KGV+ K +M K+ ++ +L A+E + + LK
Sbjct: 199 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE---------------ETASEMLKD 243
Query: 412 AVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIVPSIDH 471
VA+I+A +VL +K + AQ YL + + ++ +E++++ TGA ++ +I
Sbjct: 244 MVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKD 303
Query: 472 ISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVK--TLMFFEGCPKPLGCTILLRGADGDE 529
+S+ +DLG AG ++ + +++F E C P T+L+RG
Sbjct: 304 LSA---------------QDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHV 348
Query: 530 LKKVKHVVQYGI 541
+++V V +
Sbjct: 349 IEEVARAVDAAV 360
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/188 (22%), Positives = 87/188 (46%), Gaps = 32/188 (17%)
Query: 352 ESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVSNLLSSFDTLLQQEMDHLKM 411
++ ++KGV+ K +M K+ ++ +L A+E + + LK
Sbjct: 199 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE---------------ETASEMLKD 243
Query: 412 AVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIVPSIDH 471
VA+I+A +VL +K + AQ YL + + ++ +E++++ TGA ++ +I
Sbjct: 244 MVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKD 303
Query: 472 ISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVK--TLMFFEGCPKPLGCTILLRGADGDE 529
+S+ +DLG AG ++ + +++F E C P T+L+RG
Sbjct: 304 LSA---------------QDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHV 348
Query: 530 LKKVKHVV 537
+++V V
Sbjct: 349 IEEVARAV 356
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 61.6 bits (148), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/188 (22%), Positives = 87/188 (46%), Gaps = 32/188 (17%)
Query: 352 ESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVSNLLSSFDTLLQQEMDHLKM 411
++ ++KGV+ K +M K+ ++ +L A+E + + LK
Sbjct: 205 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE---------------ETASEMLKD 249
Query: 412 AVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIVPSIDH 471
VA+I+A +VL +K + AQ YL + + ++ +E++++ TGA ++ +I
Sbjct: 250 MVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKD 309
Query: 472 ISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVK--TLMFFEGCPKPLGCTILLRGADGDE 529
+S+ +DLG AG ++ + +++F E C P T+L+RG
Sbjct: 310 LSA---------------QDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHV 354
Query: 530 LKKVKHVV 537
+++V V
Sbjct: 355 IEEVARAV 362
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 61.6 bits (148), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/188 (22%), Positives = 87/188 (46%), Gaps = 32/188 (17%)
Query: 352 ESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVSNLLSSFDTLLQQEMDHLKM 411
++ ++KGV+ K +M K+ ++ +L A+E + + LK
Sbjct: 199 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE---------------ETASEMLKD 243
Query: 412 AVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIVPSIDH 471
VA+I+A +VL +K + AQ YL + + ++ +E++++ TGA ++ +I
Sbjct: 244 MVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAA 303
Query: 472 ISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVK--TLMFFEGCPKPLGCTILLRGADGDE 529
+S+ +DLG AG ++ + +++F E C P T+L+RG
Sbjct: 304 LSA---------------QDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHV 348
Query: 530 LKKVKHVV 537
+++V V
Sbjct: 349 IEEVARAV 356
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With
Inositol 1,3-Bisphosphate
pdb|1HYJ|A Chain A, Solution Structure Of The Eea1 Fyve Domain
Length = 65
Score = 60.5 bits (145), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 33 WMPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLR 92
W D + C C F+V RRHHCR CG +FC +C++ + PS + +R
Sbjct: 3 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSK--------KPVR 54
Query: 93 VCNYCFKQWQ 102
VC+ CF Q
Sbjct: 55 VCDACFNDLQ 64
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of
Vps27p Protein From Saccharomyces Cerevisiae
Length = 73
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 9/74 (12%)
Query: 33 WMPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLR 92
W+ +C +C + +F++ NR+HHCR CG VFC + +SNSIP P + +E +R
Sbjct: 8 WIDSDACMICSK---KFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLG------IYEPVR 58
Query: 93 VCNYCFKQWQLGVA 106
VC+ CF+ ++ V
Sbjct: 59 VCDSCFEDYEFIVT 72
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 33 WMPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLR 92
W D + C C F+V RRHHCR CG +FC +C++ + PS + +R
Sbjct: 63 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSK--------KPVR 114
Query: 93 VCNYCFKQWQ 102
VC+ CF Q
Sbjct: 115 VCDACFNDLQ 124
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 7/152 (4%)
Query: 356 VKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRV---SNLL----SSFDTLLQQEMDH 408
+ G++ K H M ++ ++ +L LE ++ +NL S L QE +
Sbjct: 1 MNGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENM 60
Query: 409 LKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIVPS 468
L+ V KI++ +V++ +K + AQ YL + V ++ ++++++ TGA IV +
Sbjct: 61 LREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVST 120
Query: 469 IDHISSPKLGYCEKFHVERFLEDLGSAGQGGK 500
ID ISS LG E+ + ED + G K
Sbjct: 121 IDEISSSDLGTAERVEQVKVGEDYMTFVTGSK 152
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 356 VKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVS-------NLLSSFDTLLQQEMDH 408
+ G+V K H +M ++ ++ ++ ALE ++ + S L QE +
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 409 LKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIVPS 468
K V KI+ +V+L +K + AQ YL + + V ++ +E++++ TGA+IV
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 469 IDHISSPKLGYCEKFHVERFLED 491
+D ++ LG E + +D
Sbjct: 121 LDDLTPSVLGEAETVEERKIGDD 143
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin
(Zfyve16) At 1.1a Resolution
Length = 90
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 33 WMPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLR 92
W+PD C C +FT RRHHCR CG+VFCG C + ++ ++ R
Sbjct: 14 WVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLE--------KEAR 65
Query: 93 VCNYCFK 99
VC C++
Sbjct: 66 VCVVCYE 72
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 42 CYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFKQ 100
C+ C QF V R+HHCR CG++FCG+C+S S PK E+ ++RVC C++Q
Sbjct: 167 CHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY----STIPKFGIEK--EVRVCEPCYEQ 219
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve
Domain From Leishmania Major
Length = 84
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 29 SRDFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSN--SIPAPSVDPKTAQE 86
S+ +W D+ C C FT RRHHCR CG V CG C+ + +IP +
Sbjct: 11 SKGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGIT------ 64
Query: 87 QWEKLRVCNYCF 98
E RVC+ C+
Sbjct: 65 --EPERVCDACY 74
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger
Fyve Domain-Containing Protein 12
Length = 89
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Query: 33 WMPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLR 92
W+ D C +C+ +F++ R+HHCR CG +FC C+SN + PS PK +R
Sbjct: 20 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSY-PKP-------VR 71
Query: 93 VCNYC 97
VC+ C
Sbjct: 72 VCDSC 76
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve
Domain-Containing Protein
Length = 82
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Query: 33 WMPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLR 92
W+ D C +C+ +F++ R+HHCR CG +FC C+SN + PS PK +R
Sbjct: 13 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSY-PKP-------VR 64
Query: 93 VCNYC 97
VC+ C
Sbjct: 65 VCDSC 69
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 94/236 (39%), Gaps = 25/236 (10%)
Query: 340 VKVKCIASGRRCESMVVKGVVCKKNVAH---RRMASKMEKPRLLILGGALEYQ------- 389
+ +K + G ES +V GV KK ++ K P + +L LE +
Sbjct: 186 IGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAE 245
Query: 390 -RVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLN 448
RV + + + ++ E + L + KI V+L + + A +Y +++
Sbjct: 246 IRV-HTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGR 304
Query: 449 TRRPLLERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMF 508
L+R G I S++ +SS LG C+ F + GG++ F
Sbjct: 305 VPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQI---------GGERY----NF 351
Query: 509 FEGCPKPLGCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPEL 564
F GCPK CTI+LRG +++ + + I S +A GA EL
Sbjct: 352 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 407
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/206 (21%), Positives = 89/206 (43%), Gaps = 21/206 (10%)
Query: 340 VKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALE-------YQRVS 392
+KV+ GR ++ ++KGV+ K+ +H +M ++E ++ IL E ++
Sbjct: 187 IKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDV 246
Query: 393 NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRP 452
+ F L + E + + + +I+ ++ + + A LL ++ V P
Sbjct: 247 TSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGP 306
Query: 453 LLERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGC 512
+E I+ TG +IVP +++ KLG+ ++++ K LV E C
Sbjct: 307 EIELIAIATGGRIVPRFSELTAEKLGFAG------LVKEISFGTTKDKMLV-----IEQC 355
Query: 513 PKPLGCTILLRGADG---DELKKVKH 535
TI +RG + +E K+ H
Sbjct: 356 KNSRAVTIFIRGGNKMIIEEAKRSLH 381
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 34 MPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRV 93
+P C C F++ RRHHC CG++ C C+ N P + + A +V
Sbjct: 370 VPVTHVXXCXNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRXA-------KV 422
Query: 94 CNYCFKQWQ 102
C+ CF + +
Sbjct: 423 CDGCFGELK 431
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 86/195 (44%), Gaps = 22/195 (11%)
Query: 339 YVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVSNLLSSF 398
++++ I G+ +S + +G + K + + ++E ++LI L+ +V + F
Sbjct: 192 HIQIIKILGGKLSDSFLDEGFILAKKFGNNQ-PKRIENAKILIANTTLDTDKVKIFGTKF 250
Query: 399 DT--------LLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTR 450
L + E + +K +AKI + + + + + ++ ++ + +
Sbjct: 251 KVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHAD 310
Query: 451 RPLLERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFE 510
+ER++ TG ++V + D S KLG C+ +E + LG + + F
Sbjct: 311 FEGVERLALVTGGEVVSTFDEPSKCKLGECDV--IEEIM--LGE---------QPFLKFS 357
Query: 511 GCPKPLGCTILLRGA 525
GC CTI+LRGA
Sbjct: 358 GCKAGEACTIVLRGA 372
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 93/236 (39%), Gaps = 25/236 (10%)
Query: 340 VKVKCIASGRRCESMVVKGVVCKKNVAH---RRMASKMEKPRLLILGGALEYQ------- 389
+ +K I G ES+ + GV KK ++ + K P++L L LE +
Sbjct: 199 IGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNAE 258
Query: 390 -RVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLN 448
RV ++ + ++ E + + ++E +++L + + A ++ +N+
Sbjct: 259 VRVEHV-EDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGR 317
Query: 449 TRRPLLERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMF 508
+ R+ + G I + I LG C F + +GS +
Sbjct: 318 VSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQ----IGS---------ERYNL 364
Query: 509 FEGCPKPLGCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPEL 564
F+GCP+ CT+LLRG + +V+ + I +A GA+ E+
Sbjct: 365 FQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEV 420
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 107/229 (46%), Gaps = 28/229 (12%)
Query: 351 CESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGAL-------EYQRVSNLLSSFDTLLQ 403
CE +V+G+V + VA+ + +++EK ++ ++ L + Q V + D +L+
Sbjct: 200 CE--LVEGLVLTQKVANSGI-TRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLR 256
Query: 404 QEMDHLKMAVAKIEAHHPDVLLVEKSVSR-----FAQEYLLAKNVSLVLNTRRPLLERIS 458
+E ++ V +I+ +VLL++KS+ R A +L + +V + R +E I
Sbjct: 257 EERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFIC 316
Query: 459 RCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKP-LG 517
+ G + V +D ++ LG E E++ G G KL+K GC P
Sbjct: 317 KTIGTKPVAHVDQFTADMLGSAE------LAEEVSLNGSG--KLIK----ITGCASPGKT 364
Query: 518 CTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELPM 566
TI++RG++ +++ + + + L + + +A GA EL +
Sbjct: 365 VTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELAL 413
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 93/226 (41%), Gaps = 32/226 (14%)
Query: 352 ESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVSNLLSSF--------DTLLQ 403
++ +KG+V H M ++++ +LIL +LEY++ + + S F D L
Sbjct: 206 DTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEK-TEVNSGFFYSSADQRDKLAA 264
Query: 404 QEMDHLKMAVAKIE-------AHHPD---VLLVEKSVSRFAQEYLLAKNVSLVLNTRRPL 453
E + + KI PD V++ +K + + + N+ + +R
Sbjct: 265 SERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRN 324
Query: 454 LERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCP 513
+ER+ TG + S++ +S LG+ + E E+ +
Sbjct: 325 MERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEE-------------KFTYVTENT 371
Query: 514 KPLGCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGA 559
P CTIL++G+ L + K V+ G+ A ++ + + + GA
Sbjct: 372 DPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGA 417
>pdb|1X4U|A Chain A, Solution Structure Of The Fyve Domain From Human Fyve
Domain Containing 27 Isoform B Protein
Length = 84
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 42 CYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYC 97
C C + F+V +R C CG FC +C S +P S+ + Q E + VC C
Sbjct: 17 CTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASC 72
>pdb|1WFK|A Chain A, Fyve Domain Of Fyve Domain Containing 19 Protein From
Mus Musculus
Length = 88
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 42 CYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAP 77
CY C +FT+F + + C+ CGR FC C S S P
Sbjct: 12 CYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVP 47
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 37.7 bits (86), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 454 LERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCP 513
+ER++ TG +I + DH KLG C+ ED L+ F G
Sbjct: 307 VERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGED-------------KLIHFSGVA 353
Query: 514 KPLGCTILLRGA 525
CTI+LRGA
Sbjct: 354 LGEACTIVLRGA 365
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 37.0 bits (84), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 90/209 (43%), Gaps = 31/209 (14%)
Query: 352 ESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVSNLLSSF--------DTLLQ 403
++ +++G+V H M ++E +L +LEY++ + + S F + L++
Sbjct: 195 DTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEK-TEVNSGFFYKSAEEREKLVK 253
Query: 404 QEMDHLKMAVAKI---------EAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLL 454
E ++ V KI ++ V++ +K + F+ + L + + + +R +
Sbjct: 254 AERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNM 313
Query: 455 ERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPK 514
ER++ G + S+D ++ C H + LG + F E C
Sbjct: 314 ERLTLACGGIALNSLDDLNPD----CLLGHAGVYEYTLGE---------EKFTFIEKCNN 360
Query: 515 PLGCTILLRGADGDELKKVKHVVQYGIFA 543
P T+L++G + L ++K ++ G+ A
Sbjct: 361 PRSVTLLIKGPNKHTLTQIKDAIRDGLRA 389
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 13/162 (8%)
Query: 340 VKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKM------EKPRLLILGGALE------ 387
+K++ G +S ++ GV+ K+ +H +M + + +L IL E
Sbjct: 224 IKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKT 283
Query: 388 -YQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLV 446
++ + + + L E D K + ++ DV++ + A LL ++ V
Sbjct: 284 KHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAV 343
Query: 447 LNTRRPLLERISRCTGAQIVPSIDHISSPKLGYCEKFHVERF 488
LE I+ T +IVP +S KLG C + + + F
Sbjct: 344 RWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEF 385
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 69 CTSNSIPAPSVDPKTAQEQWEKLRVC---NYCFKQWQLG---VATLHNGTLEEEYGVYRS 122
C SI P + K Q +++ +RVC N C +W++G + N T EEY
Sbjct: 320 CARPSIADPFLPQKVEQGRYDDIRVCIGCNVCISRWEIGGPPMICTQNATAGEEY----- 374
Query: 123 DSETRHFYGPLEFDDMSNDD 142
R + P +F N D
Sbjct: 375 ----RRGWHPEKFRQTKNKD 390
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 69 CTSNSIPAPSVDPKTAQEQWEKLRVC---NYCFKQWQLG---VATLHNGTLEEEYGVYRS 122
C SI P + K Q +++ +RVC N C +W++G + N T EEY
Sbjct: 320 CARPSIADPFLPQKVEQGRYDDIRVCIGCNVCISRWEIGGPPMICTQNATAGEEY----- 374
Query: 123 DSETRHFYGPLEFDDMSNDD 142
R + P +F N D
Sbjct: 375 ----RRGWHPEKFRQTKNKD 390
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 35.0 bits (79), Expect = 0.38, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 1671 GILGGPK-NASPTVISPKQYKKRFRKAMTTYFLMVPDQWFPLSTVPSKLQAEFCEDTQM 1728
G +GGP+ +A P P+Q R RK + Y + P Q FP S L+ E D +
Sbjct: 71 GAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVDI 129
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 88/209 (42%), Gaps = 24/209 (11%)
Query: 387 EYQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSR-----FAQEYLLAK 441
E + N D +L++E +L KI+ +VLL++KS+ R A +L
Sbjct: 249 ENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKL 308
Query: 442 NVSLVLNTRRPLLERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKK 501
N+ +V + R +E +S+ G + + I+ + +L + +E++ S G K
Sbjct: 309 NIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSAD------LVEEIDS---DGSK 359
Query: 502 LVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASL 561
+V+ +P ++++RGA+ + + + + + L E +A G
Sbjct: 360 IVRVTGIRNNNARP-TVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGG--- 415
Query: 562 PELPMPAPSIVVPDKSSSIERSISTVPGF 590
AP I + + S RS+ V F
Sbjct: 416 ------APEIEISRRLSKEARSMEGVQAF 438
>pdb|2V9K|A Chain A, Crystal Structure Of Human Pus10, A Novel Pseudouridine
Synthase
Length = 530
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 943 FRYASIDVHSVYLPPHKLDFINEYQEWIQKEADEVV 978
FR+ +D H+ Y P+K + +NE Q++++ E DE++
Sbjct: 27 FRFCGVDFHAPYKLPYK-ELLNELQKFLETEKDELI 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,931,990
Number of Sequences: 62578
Number of extensions: 2106845
Number of successful extensions: 5626
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5522
Number of HSP's gapped (non-prelim): 73
length of query: 1731
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1619
effective length of database: 7,964,601
effective search space: 12894689019
effective search space used: 12894689019
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)