Query 000278
Match_columns 1731
No_of_seqs 625 out of 3609
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:30:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0230 Phosphatidylinositol-4 100.0 4E-241 9E-246 2250.8 82.2 1491 34-1713 92-1598(1598)
2 COG5253 MSS4 Phosphatidylinosi 100.0 9.4E-73 2E-77 654.1 11.3 373 1313-1712 226-607 (612)
3 cd00139 PIPKc Phosphatidylinos 100.0 4.5E-67 9.7E-72 613.5 28.7 257 1435-1702 52-313 (313)
4 smart00330 PIPKc Phosphatidyli 100.0 1.5E-65 3.2E-70 608.1 26.2 263 1423-1701 17-342 (342)
5 KOG0229 Phosphatidylinositol-4 100.0 2.9E-59 6.3E-64 544.5 21.6 303 1386-1702 33-420 (420)
6 PLN03185 phosphatidylinositol 100.0 2.3E-56 4.9E-61 564.4 25.5 300 1385-1702 338-765 (765)
7 PF01504 PIP5K: Phosphatidylin 100.0 1.9E-55 4E-60 505.9 17.9 222 1467-1701 2-252 (252)
8 TIGR02344 chap_CCT_gamma T-com 100.0 2.1E-48 4.6E-53 493.2 30.0 305 245-565 85-415 (525)
9 TIGR02339 thermosome_arch ther 100.0 6.7E-47 1.5E-51 478.9 30.4 304 245-565 85-414 (519)
10 KOG0364 Chaperonin complex com 100.0 8.1E-48 1.7E-52 441.4 17.3 302 245-564 88-414 (527)
11 cd03343 cpn60 cpn60 chaperonin 100.0 2.7E-46 5.9E-51 473.8 30.1 304 245-565 84-411 (517)
12 cd03339 TCP1_epsilon TCP-1 (CT 100.0 4.4E-46 9.5E-51 471.9 30.7 304 245-565 92-421 (526)
13 cd03335 TCP1_alpha TCP-1 (CTT 100.0 3.6E-45 7.9E-50 463.6 30.8 304 245-565 77-412 (527)
14 TIGR02343 chap_CCT_epsi T-comp 100.0 6.8E-45 1.5E-49 460.5 30.8 304 245-565 96-425 (532)
15 TIGR02347 chap_CCT_zeta T-comp 100.0 1.4E-44 3E-49 456.8 32.0 301 245-565 85-420 (531)
16 PTZ00212 T-complex protein 1 s 100.0 1.3E-44 2.9E-49 458.3 30.9 297 245-565 96-420 (533)
17 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.3E-44 2.8E-49 458.4 30.4 298 245-565 85-413 (522)
18 cd03338 TCP1_delta TCP-1 (CTT 100.0 2.7E-44 5.9E-49 455.1 30.5 303 245-565 77-410 (515)
19 cd03336 TCP1_beta TCP-1 (CTT o 100.0 4.6E-44 9.9E-49 452.3 32.0 297 245-565 84-408 (517)
20 cd03334 Fab1_TCP TCP-1 like do 100.0 3.8E-44 8.3E-49 415.0 28.4 259 287-558 2-261 (261)
21 TIGR02342 chap_CCT_delta T-com 100.0 5.6E-44 1.2E-48 451.5 30.6 303 245-565 78-411 (517)
22 TIGR02340 chap_CCT_alpha T-com 100.0 1.8E-43 3.8E-48 448.8 31.6 304 245-565 81-416 (536)
23 TIGR02345 chap_CCT_eta T-compl 100.0 9.2E-44 2E-48 450.0 28.5 299 245-565 86-414 (522)
24 KOG0361 Chaperonin complex com 100.0 1E-43 2.2E-48 400.9 20.9 298 245-565 89-417 (543)
25 cd03337 TCP1_gamma TCP-1 (CTT 100.0 3.3E-43 7.1E-48 440.8 26.0 271 245-565 85-374 (480)
26 TIGR02341 chap_CCT_beta T-comp 100.0 5.4E-42 1.2E-46 433.0 32.1 297 245-565 85-409 (519)
27 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.1E-41 2.4E-46 427.1 24.5 279 245-565 81-377 (484)
28 TIGR02346 chap_CCT_theta T-com 100.0 8E-41 1.7E-45 423.4 30.9 300 245-565 87-412 (531)
29 cd00309 chaperonin_type_I_II c 100.0 5.9E-40 1.3E-44 411.3 26.4 267 245-565 77-360 (464)
30 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.7E-39 5.9E-44 404.8 26.3 269 245-565 77-364 (472)
31 COG0459 GroL Chaperonin GroEL 100.0 5.8E-39 1.3E-43 400.3 25.6 298 245-565 80-408 (524)
32 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 8.5E-39 1.8E-43 403.6 27.0 297 245-564 58-378 (485)
33 KOG0363 Chaperonin complex com 100.0 3.2E-38 6.9E-43 354.3 22.4 296 245-564 89-412 (527)
34 KOG0358 Chaperonin complex com 100.0 7.3E-38 1.6E-42 353.1 20.7 304 245-565 95-428 (534)
35 KOG0359 Chaperonin complex com 100.0 1.3E-37 2.8E-42 357.3 16.1 300 245-564 86-410 (520)
36 KOG0360 Chaperonin complex com 100.0 1.1E-36 2.3E-41 353.4 18.7 303 245-564 88-421 (545)
37 PRK00013 groEL chaperonin GroE 100.0 7E-36 1.5E-40 377.4 27.1 273 245-565 83-422 (542)
38 PTZ00114 Heat shock protein 60 100.0 7.6E-36 1.6E-40 378.9 27.3 272 245-565 95-435 (555)
39 PRK12849 groEL chaperonin GroE 100.0 9.8E-36 2.1E-40 376.1 28.0 272 245-565 83-422 (542)
40 PRK12851 groEL chaperonin GroE 100.0 2.5E-35 5.4E-40 372.8 26.7 273 245-565 84-423 (541)
41 cd03344 GroEL GroEL_like type 100.0 4.1E-35 9E-40 369.6 28.2 272 245-565 81-420 (520)
42 KOG0362 Chaperonin complex com 100.0 4.6E-35 1E-39 342.5 24.8 298 245-565 95-415 (537)
43 TIGR02348 GroEL chaperonin Gro 100.0 4.8E-35 1E-39 369.6 27.0 272 245-565 82-421 (524)
44 PRK12852 groEL chaperonin GroE 100.0 1.1E-34 2.4E-39 368.0 26.4 272 245-565 84-423 (545)
45 PRK12850 groEL chaperonin GroE 100.0 1.3E-34 2.8E-39 366.4 26.9 273 245-565 84-423 (544)
46 PLN03167 Chaperonin-60 beta su 100.0 1.3E-34 2.8E-39 368.0 20.9 286 245-565 139-477 (600)
47 PRK14104 chaperonin GroEL; Pro 100.0 7.2E-34 1.5E-38 359.5 25.5 272 245-565 84-423 (546)
48 CHL00093 groEL chaperonin GroE 100.0 7.7E-34 1.7E-38 359.1 24.6 274 245-565 83-422 (529)
49 cd03333 chaperonin_like chaper 100.0 5.5E-33 1.2E-37 313.1 23.6 193 307-550 17-209 (209)
50 KOG0357 Chaperonin complex com 99.9 8.2E-27 1.8E-31 262.1 11.4 200 245-563 88-287 (400)
51 KOG0356 Mitochondrial chaperon 99.9 8.7E-22 1.9E-26 235.4 14.9 282 243-563 95-435 (550)
52 PF01363 FYVE: FYVE zinc finge 99.6 1.3E-15 2.9E-20 141.8 2.6 68 31-102 1-68 (69)
53 smart00064 FYVE Protein presen 99.4 4.1E-14 8.9E-19 131.4 4.0 67 30-102 1-67 (68)
54 KOG1729 FYVE finger containing 99.4 1.6E-13 3.4E-18 159.0 2.0 73 24-103 153-226 (288)
55 PTZ00303 phosphatidylinositol 99.4 3.5E-13 7.7E-18 163.5 4.9 75 28-102 448-530 (1374)
56 KOG1819 FYVE finger-containing 99.3 4.1E-13 9E-18 156.4 1.9 70 25-100 887-961 (990)
57 KOG1818 Membrane trafficking a 99.2 5.6E-12 1.2E-16 156.5 2.9 68 30-106 159-226 (634)
58 cd00065 FYVE FYVE domain; Zinc 99.0 1.3E-10 2.8E-15 104.2 2.1 55 39-99 2-56 (57)
59 KOG1842 FYVE finger-containing 98.9 1.3E-10 2.7E-15 136.7 -1.0 73 32-104 173-261 (505)
60 KOG1841 Smad anchor for recept 98.7 3.7E-09 8.1E-14 135.3 2.3 54 26-79 544-597 (1287)
61 KOG1843 Uncharacterized conser 98.5 2.3E-08 5E-13 117.0 1.9 69 28-103 149-220 (473)
62 KOG1409 Uncharacterized conser 98.1 8.3E-07 1.8E-11 102.7 1.3 75 21-104 267-352 (404)
63 KOG4424 Predicted Rho/Rac guan 97.8 8.5E-06 1.8E-10 100.0 1.9 97 30-135 408-508 (623)
64 KOG0230 Phosphatidylinositol-4 97.4 9.1E-05 2E-09 99.3 3.2 106 828-949 659-764 (1598)
65 KOG1811 Predicted Zn2+-binding 97.2 6.1E-05 1.3E-09 91.8 -1.7 66 30-101 313-383 (1141)
66 PF02318 FYVE_2: FYVE-type zin 93.7 0.047 1E-06 56.8 2.9 51 39-102 54-105 (118)
67 KOG0993 Rab5 GTPase effector R 86.7 0.041 9E-07 65.6 -5.6 68 32-107 461-530 (542)
68 KOG1729 FYVE finger containing 86.0 0.18 3.9E-06 60.0 -0.9 68 31-100 12-81 (288)
69 KOG1841 Smad anchor for recept 85.7 0.45 9.8E-06 63.7 2.4 55 30-103 648-702 (1287)
70 PRK00464 nrdR transcriptional 71.2 2 4.3E-05 46.9 1.3 25 41-65 2-38 (154)
71 PF07975 C1_4: TFIIH C1-like d 61.1 2.1 4.5E-05 38.0 -0.7 30 41-70 1-36 (51)
72 KOG4275 Predicted E3 ubiquitin 59.8 1.7 3.7E-05 50.7 -1.9 52 35-101 40-91 (350)
73 PF09538 FYDLN_acid: Protein o 58.2 5.1 0.00011 41.2 1.4 26 40-65 10-36 (108)
74 TIGR00622 ssl1 transcription f 58.0 11 0.00024 38.9 3.6 40 33-72 49-98 (112)
75 TIGR02300 FYDLN_acid conserved 55.9 6.2 0.00013 41.3 1.5 26 40-65 10-36 (129)
76 KOG0320 Predicted E3 ubiquitin 50.8 2 4.4E-05 47.1 -3.0 48 39-102 131-178 (187)
77 PF07450 HycH: Formate hydroge 48.2 9.8 0.00021 40.1 1.6 22 1628-1656 24-45 (131)
78 PRK15084 formate hydrogenlyase 47.2 11 0.00023 39.9 1.6 22 1628-1656 26-47 (133)
79 KOG3576 Ovo and related transc 47.1 5.3 0.00012 44.5 -0.6 34 35-68 113-158 (267)
80 PF13719 zinc_ribbon_5: zinc-r 44.8 12 0.00026 31.0 1.3 26 40-65 3-35 (37)
81 PF13717 zinc_ribbon_4: zinc-r 44.1 12 0.00025 31.0 1.1 25 41-65 4-35 (36)
82 KOG0978 E3 ubiquitin ligase in 41.0 3.7 8E-05 54.1 -3.4 42 39-99 643-686 (698)
83 smart00154 ZnF_AN1 AN1-like Zi 40.8 15 0.00034 30.8 1.4 27 42-70 1-27 (39)
84 KOG2164 Predicted E3 ubiquitin 40.4 8.9 0.00019 48.5 -0.1 51 40-103 187-237 (513)
85 PF01485 IBR: IBR domain; Int 39.7 20 0.00044 32.4 2.1 33 40-72 19-57 (64)
86 PLN02667 inositol polyphosphat 37.7 52 0.0011 39.8 5.6 70 1488-1572 23-99 (286)
87 PF02579 Nitro_FeMo-Co: Dinitr 36.2 91 0.002 30.4 6.3 42 415-457 48-89 (94)
88 PHA02768 hypothetical protein; 35.5 13 0.00029 33.6 0.2 25 41-65 7-41 (55)
89 cd01143 YvrC Periplasmic bindi 35.4 77 0.0017 35.1 6.3 51 413-463 53-110 (195)
90 PF06296 DUF1044: Protein of u 35.2 1.5E+02 0.0032 31.4 7.7 78 1443-1520 2-107 (120)
91 PF10571 UPF0547: Uncharacteri 33.4 22 0.00048 27.3 1.0 23 41-65 2-24 (26)
92 TIGR01031 rpmF_bact ribosomal 33.1 26 0.00057 31.7 1.7 30 30-63 15-47 (55)
93 PRK00398 rpoP DNA-directed RNA 32.7 23 0.00049 30.6 1.2 25 41-65 5-31 (46)
94 TIGR03659 IsdE heme ABC transp 32.6 69 0.0015 38.4 5.7 52 413-464 84-141 (289)
95 PRK00420 hypothetical protein; 32.4 27 0.00059 36.2 1.8 24 40-63 24-48 (112)
96 cd00851 MTH1175 This uncharact 31.8 75 0.0016 31.6 4.9 38 412-450 55-92 (103)
97 PF07282 OrfB_Zn_ribbon: Putat 31.2 34 0.00075 31.9 2.2 28 38-65 27-56 (69)
98 COG2126 RPL37A Ribosomal prote 31.0 24 0.00051 32.1 1.0 7 58-64 19-25 (61)
99 PRK09534 btuF corrinoid ABC tr 30.9 83 0.0018 39.2 6.2 52 413-464 112-170 (359)
100 cd01144 BtuF Cobalamin binding 30.3 98 0.0021 35.8 6.3 52 413-464 50-108 (245)
101 KOG3795 Uncharacterized conser 30.0 26 0.00057 38.3 1.3 27 48-77 8-37 (230)
102 PRK00432 30S ribosomal protein 28.5 40 0.00088 30.0 2.0 27 40-66 21-48 (50)
103 cd00562 NifX_NifB This CD repr 26.9 1.2E+02 0.0026 30.0 5.4 36 414-450 55-90 (102)
104 KOG3799 Rab3 effector RIM1 and 26.2 23 0.0005 37.2 0.1 51 40-101 66-117 (169)
105 PRK03564 formate dehydrogenase 26.0 29 0.00063 42.1 1.0 61 40-102 188-263 (309)
106 smart00647 IBR In Between Ring 25.5 46 0.001 30.1 2.0 34 39-72 18-57 (64)
107 TIGR02098 MJ0042_CXXC MJ0042 f 25.1 37 0.0008 28.0 1.1 25 41-65 4-35 (38)
108 KOG1314 DHHC-type Zn-finger pr 24.9 37 0.0008 41.3 1.4 37 25-63 72-113 (414)
109 PRK14559 putative protein seri 24.2 38 0.00083 45.3 1.6 30 39-72 15-50 (645)
110 KOG1814 Predicted E3 ubiquitin 23.6 36 0.00079 42.2 1.1 40 32-72 362-403 (445)
111 COG1433 Uncharacterized conser 23.5 2E+02 0.0044 30.4 6.4 50 413-463 58-107 (121)
112 cd01138 FeuA Periplasmic bindi 23.4 1.3E+02 0.0027 35.0 5.6 50 413-463 59-112 (248)
113 KOG3173 Predicted Zn-finger pr 23.4 39 0.00085 37.6 1.2 30 38-70 104-133 (167)
114 PF12226 Astro_capsid_p: Turke 23.0 50 0.0011 36.1 1.9 50 1442-1497 102-154 (230)
115 COG1198 PriA Primosomal protei 22.7 39 0.00084 45.7 1.3 24 41-64 446-471 (730)
116 COG5151 SSL1 RNA polymerase II 22.7 49 0.0011 39.3 1.9 39 33-71 356-404 (421)
117 PF12773 DZR: Double zinc ribb 21.4 58 0.0013 28.4 1.7 27 37-63 10-37 (50)
118 cd04743 NPD_PKS 2-Nitropropane 21.3 2E+02 0.0043 35.4 6.7 55 411-466 73-127 (320)
119 PF01497 Peripla_BP_2: Peripla 21.2 1.8E+02 0.004 33.1 6.3 51 414-464 54-112 (238)
120 PF06750 DiS_P_DiS: Bacterial 20.6 57 0.0012 32.7 1.6 25 40-64 34-67 (92)
121 TIGR01562 FdhE formate dehydro 20.3 53 0.0011 40.0 1.6 63 39-102 184-263 (305)
122 PRK04023 DNA polymerase II lar 20.2 59 0.0013 44.7 2.1 28 39-70 626-658 (1121)
No 1
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-241 Score=2250.79 Aligned_cols=1491 Identities=52% Similarity=0.805 Sum_probs=1064.3
Q ss_pred ccCCCccccccccccCCCCcccccccccCceEeCCCCCCcccCCCCCCcccccCCcccccchhhHHHHhccccccCCCCc
Q 000278 34 MPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFKQWQLGVATLHNGTL 113 (1731)
Q Consensus 34 ~pd~~~~~C~~C~~~Fsl~~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~~l~~~~~~~~~~~~ 113 (1731)
+||.....|+.|...|+.|+|+||| ||+|||..|-.. .... ..++. +.|..........-.
T Consensus 92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~~~~-~~~~--------~~~e~----d~c~~~~~~~~~sss---- 152 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSCIDG-MSIR--------CDGEL----DYCSRYVEDFAKSSS---- 152 (1598)
T ss_pred CCccccchhhhhccchhhhhccccc--CccccCCcccCC-cccc--------ccccc----chhHHHhhhhhccCC----
Confidence 8999999999999999999999999 999999999111 0000 11122 778776643322211
Q ss_pred cccccccccCccccccccccccCCCCCCCCCccccCCccccc---cccccCCCCCCCcccCCCCCcccCCCCCCcccccc
Q 000278 114 EEEYGVYRSDSETRHFYGPLEFDDMSNDDGSHRIHLDQDNTA---TKCLSTSPLLSSFEAQGLEGISQHGKKDEQEIGDE 190 (1731)
Q Consensus 114 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1731)
+.+..|+++..-...++.+.. ..|..+. ..++++.|.+.....-+-.+....+. +++.--+.
T Consensus 153 ----------~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~~~~~~s~p~~~~~~~l~~~~~~~s~~-~~n~~~~~ 217 (1598)
T KOG0230|consen 153 ----------SEMNQYDGPLQQNKHDDVPRA----RLGRKTSVGYEESLSSFPYTSDLNSLLQESNEKSQR-DENCGRSV 217 (1598)
T ss_pred ----------cCCCccccchhccCCCCCccc----ccccccccccccccCCCCCchhHHHHHhhhhhhccc-Cccccccc
Confidence 111122333222222222211 1111111 10111111000000000011000000 11111123
Q ss_pred cccccchhhcccCCCCCCcCCCCCccccCCCCCCchhhhhcCCCCCCCCCccCCccCCcccccceeehehHHHHHhHHHH
Q 000278 191 CEASCSLYAAENVSAGPVDFENDGLLWLPPEPEDEEDEREAGLFDDDDDDDAGDATGEWGYLRTSSSFGSGETRNKDKSS 270 (1731)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~pp~~~d~~d~~~~~~~~~~d~d~~~~evGDGTT~~~s~viLA~ell~~~~~l 270 (1731)
++.++ .+..+....+++||++++++|.||+|++|+||+++++++ +|+++ +|+-|.++.++.+...-+.+...+-...
T Consensus 218 ~~~~~-~~~~~~d~~~~~d~~~~~~~~~p~~pene~dd~~~~~~~-~~~~~-~D~~~~~~~~~~s~s~s~~~~~~~~~~~ 294 (1598)
T KOG0230|consen 218 IEFSS-PNDEEEDEVEILDFENNGLLWEPPEPENEEDDAESVLAD-DDDDE-GDTSGKWNPLRLSNSFSAPEYKSKDKSA 294 (1598)
T ss_pred cccCC-ccccccccccccchhhccCCCCCCCCCcccccchhcccc-ccccc-cccccccccccccCccCCCCccccccch
Confidence 33332 333333333799999999999999999999999999765 33322 3355777664444444444444444444
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCchhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCc
Q 000278 271 EEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDEESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRR 350 (1731)
Q Consensus 271 i~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~ 350 (1731)
.+....+..+..+++++++.+|+..+.+++..+....+|.+++..|+|+|+..++|+.+.++.|||++|||||||+||++
T Consensus 295 ee~~~~m~~~~~~~fr~~~a~Llr~~~ls~~~d~~~~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~ 374 (1598)
T KOG0230|consen 295 EEDEKVMRNVVESHFRALVAQLLRSENLSVVMDGAHQEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSR 374 (1598)
T ss_pred hhcchhhhccccchHHHHHHHHhcccCcCccccchhhhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCc
Confidence 45556788889999999999999999998877666789999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEEeeecccCCCceeecCCeEEEecccccccccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Q 000278 351 CESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSV 430 (1731)
Q Consensus 351 ~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~Le~~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~V 430 (1731)
.||++|+||||.|+++|+.|..++++|||||+.|+|+|+|..+++.++++++.||++||+.+|.+|...+||||+|+++|
T Consensus 375 ~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksV 454 (1598)
T KOG0230|consen 375 VDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSV 454 (1598)
T ss_pred ccceeeeEEEeecchhhhhhhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCceeeccCChhHHHHHHHHhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEE
Q 000278 431 SRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFE 510 (1731)
Q Consensus 431 s~~Al~~L~~~gI~~v~~Vk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fe 510 (1731)
+++|+++|...||+++.|||+..|+||||||||+|++++|.++..+||+|+.|+++++.++| +..||+|||+
T Consensus 455 S~~aqe~L~~k~I~lvlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~h--------k~sKTlmffe 526 (1598)
T KOG0230|consen 455 SRIAQELLLDKGISLVLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEH--------KPSKTLMFFE 526 (1598)
T ss_pred HHHHHHHhhccCeEEEEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcc--------cchhhhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999998864 4579999999
Q ss_pred cCCCCCceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEecCCCccCCCCCCCCCCcccCCCCcccccccccCCCC
Q 000278 511 GCPKPLGCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELPMPAPSIVVPDKSSSIERSISTVPGF 590 (1731)
Q Consensus 511 gc~~~~g~TIlLRG~t~~~L~evKr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 590 (1731)
||++++||||+|||+..++|++||++++++++|+||+.+|.+|++|.||++.........++.+. .+.++++++|++
T Consensus 527 gc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~~~~~~~~~~~~~~---~~~~~~s~~~~~ 603 (1598)
T KOG0230|consen 527 GCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASISSPKLSIPTSVETS---IINRSISTSPGE 603 (1598)
T ss_pred cCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccccccccceeccc---ccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999886554443333333 345777777776
Q ss_pred CCCCCCCCCCCCCCCCCCccCCcccccccCCCCccchhhcccccCCCCCCCCCC-CCC---CCCccccCCCCCCCCCCCC
Q 000278 591 SVPASENSPGPQPGPEHKRSHSVPISDLASSTGIGSIVKMEKSLLPSLSNGDSL-QST---EPTSSLTNSTASFSPVPSS 666 (1731)
Q Consensus 591 ~~p~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~---~~~~~~~~~~~l~s~~~~~ 666 (1731)
+.-+.+.+.......++..++.....+. ...+|+... .+. .+... -+.+++.+....+
T Consensus 604 t~st~~~a~~~~~~~e~~~~~~~~~~~~-----------------ls~sp~~~~~~~~~~i~P~~~-~~e~~~~~~~~~~ 665 (1598)
T KOG0230|consen 604 TDSTAEKAPVEALQVEPNRFNGALSSEL-----------------LSSSPFLEFPLDLLEIAPGEL-VIETRLSSYSKGP 665 (1598)
T ss_pred Ccchhcccchhhhccchhhhhcccccce-----------------eecccccccCCCccccCCccc-eeecchhhhcCch
Confidence 5433322221111112222221111111 011111100 000 00000 0000000000000
Q ss_pred ccccCCcCCCCCCCcccccccchhhhhhhhhhhhccCcccccCCCcccCCCCCCccccccchhcccCCCCcccccCCCCC
Q 000278 667 RKVISDSFHTGPLSHHEDKNETASKETLVKDASAANNGQAAKNDHHGVDGLGPLDALDQGIVVNNSQNNSGFVIANQTGD 746 (1731)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1731)
....+.+.... .. ....... .. -+..+.... ......+.. +.+..
T Consensus 666 -----~~~~lv~~~es--------~~---~~~~~s~-~~-------~~~~l~e~~------~~~~~~~~~-----k~~~~ 710 (1598)
T KOG0230|consen 666 -----KQNGLVPAHES--------VL---NDLHEST-LS-------ILSKLPETR------SGTHEGNED-----KGPGL 710 (1598)
T ss_pred -----hhccccccccc--------cc---ccccccc-cc-------ccccccchh------cccchhccc-----cCccc
Confidence 00000000000 00 0000000 00 000000000 000000000 00000
Q ss_pred ccccccc-cCCC--CCCCCccccCCCCCCCCCCCceEEEEEeeeecCCCCccccceEEEEeccCCCCcchHHHHHHHhhc
Q 000278 747 SEVSSTQ-QDSN--NYPEEPKLLKEEFPPSPSDHQSILVSLSSRCVWKGTVCERSHLFRIKYYGSFDKPLGRFLRDHLFD 823 (1731)
Q Consensus 747 ~~~~~~~-~~~~--~~~~~~~~~~~~~~~~p~~HQsI~Vl~Ss~c~~~~~~C~~P~l~~I~fY~~~D~tLG~fLe~~~~~ 823 (1731)
. ....+ +.++ ..++.. ..++.++|.+||+|+||||++|.+++.+|++|||++|+|||++|+||||||+++||+
T Consensus 711 ~-~~~~~~~~~~~~~~~e~~---~s~~~~~~~~HQsilVl~ss~~~~k~~~C~r~~l~~ikyy~~~D~~lg~fL~~~~f~ 786 (1598)
T KOG0230|consen 711 E-PELANNQNIQRPEETEEQ---SSKDALDPSSHQSILVLFSSRSVLKGSVCERPHLLRIKYYGSFDKPLGRFLRDYLFD 786 (1598)
T ss_pred c-ccccccccccchhhhhhh---hcccCCCccccceeEEEEeeeeeccCCccccccEEEEEeeccccchHhHHHHHHHhc
Confidence 0 00000 0000 112222 455667999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccceeEEEecCcEEEEEEEecCCcCCCCCCCCcEEEEeccCCCCCCCCCCCCcceEeccchhhccchH
Q 000278 824 QNYRCRSCDMPSEAHVHCYTHRQGTLTISVKKLPEILLPGEREGKIWMWHRCLQCPRINGFPPATRRVIMSDAAWGLSFG 903 (1731)
Q Consensus 824 ~~~~C~sC~~pm~~H~r~yvH~~g~ltI~v~~l~~~~lpg~~~~~I~mWs~C~~C~~~~g~~~~T~~v~mSd~tw~~SFg 903 (1731)
+.|.|++|.+||++|+|+|||++|+++|+|++++.. +||+.+|+|||||||++|++. ||+|++|+||++||++|||
T Consensus 787 ~~~~C~sC~~~~laHv~~yvh~~g~l~I~v~~~~e~-l~~e~~~kI~~w~~ClkC~~~---~~sT~rv~~Sdaaw~lSfg 862 (1598)
T KOG0230|consen 787 QRYMCPSCNEPMLAHVRCYVHGNGSLTISVKKLPEL-LPGEQKGKIWMWSRCLKCNRF---PPSTRRVVMSDAAWGLSFG 862 (1598)
T ss_pred ccccCccccchHHHHHHHHhhccCceEEEeeccccc-cccccCceEEEEeccccCCCC---CCCcceeEcchhhHhhhHH
Confidence 999999999999999999999999999999999876 999999999999999999974 8999999999999999999
Q ss_pred hHhhhhcccccccCCcCCCCCccccceeeecccCCEEEEEEeeeeeeeEEecCCceeeechhhHHHHHHHHHHHHHHHHH
Q 000278 904 KFLELSFSNHAAASRVASCGHSLHRDCLRFYGFGKMVACFRYASIDVHSVYLPPHKLDFINEYQEWIQKEADEVVSQAEL 983 (1731)
Q Consensus 904 KfLEL~F~~~~~~~r~~~C~H~l~rDh~ryFg~~~~va~f~y~~I~v~ev~lPp~~l~~~~~~~~~l~~e~~~v~~k~~~ 983 (1731)
|||||+||+|+++.|+++|||+||||||||||||+|||+|+|++|++|+|++||.+|+|++..+.|+++|.++|+.||+.
T Consensus 863 KfLEl~fs~~a~~~R~~~C~Hsl~rD~L~ffgf~~mva~f~ys~i~v~~v~lpp~~l~~~~~~~~~~~~e~k~v~~k~~~ 942 (1598)
T KOG0230|consen 863 KFLELSFSNHATANRVASCGHSLHRDCLRFFGFGNMVACFRYSPIEVYEVDLPPSKLEFNHIQQEWLQEEIKEVIEKGEE 942 (1598)
T ss_pred HHHHhhhccccccccccCCcchhhhhhhhhcccCCceeeeeeccceeEEEeCChhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhhhhHHHHHHHHHHhHhHHHHH
Q 000278 984 LFSEVLNNLSPILDKKVGPELRHQIVELEGMLQREKAEFEESVQKALSREASKGQPVIDILEINRLRRQLLFQSYMWDHR 1063 (1731)
Q Consensus 984 ~~~~v~~~L~~i~~~~~~~~~~~~i~el~~~l~~e~~~~~~~l~~~~~~~~~~~~~~~~il~lN~l~r~l~~~~~~Wd~~ 1063 (1731)
+|++|.++|.+|+.+.. -+..+.+|+.+|.+|+.+|++.++.++......+++.+|+|.+|++||.|...++.||.+
T Consensus 943 ~~n~v~~~l~~i~~~~~---~~~~i~~l~~~l~~e~~~f~~~l~~~~~~~~~~~~~s~d~l~l~~~rr~l~~~s~~w~~~ 1019 (1598)
T KOG0230|consen 943 LYNEVLERLSRIAEKDE---NRPLIQELKELLKHEKKEFKQNLQPIFTLEVDDGQLSHDILALNRDRRALLASSYLWDER 1019 (1598)
T ss_pred HHHHHHHHHHHhhhccc---ccchhhhhhhhhhhhHHHHHHhhhhhhhhccccCcchhhHHHHHHHHHHHHhhhcccccc
Confidence 99999999999998722 266789999999999999999999999988878899999999999999999999999999
Q ss_pred HHHHhhccccccCCCccccccCCCCCCCccccccccccCCCC--CCCCcccccccccccCccccccCCCCCCCCcCcccc
Q 000278 1064 LVYAANLDIDSNGLKSEISEQGEKIPTSGEKVVQMNVLAMPE--TGSSFYDSLLADAKLDKSSDREEGGDSSTTLSDGFL 1141 (1731)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1141 (1731)
++.+..++|-.. .+....+..++..+ .. ....|+ +... .++.....+. .. .+ ..+..
T Consensus 1020 l~s~~~~~k~~~-~~~~~~~~~~~~~~-----~~--~~r~p~~~k~~~-~~~~~~~~~s------~~-----~~-~~~~~ 1078 (1598)
T KOG0230|consen 1020 LISLSKSLKLES-SKDTKPKESETNST-----AK--RKRSPEPQKGVD-EDSFLTDSSS------DV-----SS-LEHLN 1078 (1598)
T ss_pred chhhhhhhcccc-ccccccccccccCc-----cc--cccCchhhcccc-cccccccccc------cc-----Cc-ccccc
Confidence 998766655110 00000000000000 00 000000 0000 0000000000 00 00 00000
Q ss_pred cccccCCCCCccccccCCCCccccccccCCCcccchhhcccccCCCCCcccchhhhhhhhhccCcccccCCCCCCCCCCc
Q 000278 1142 QETIMGQDSNLLENDQGNISASISFCEQSGSLESEVNVRRTLSEGQVPVVANLSDTLEAAWTGENYQVNNTYGLSDSPLV 1221 (1731)
Q Consensus 1142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1221 (1731)
.+....+... +...........+.....+....++.+.+..+ .....+.+.++.+|.|+...+. + .|+.
T Consensus 1079 lp~~~~s~~~----d~~~~~~~~~~~~~~s~~~~~~~v~n~~s~~~-~~~~~~~~~l~~~~~g~r~~~~-----~-~P~s 1147 (1598)
T KOG0230|consen 1079 LPLPEDSNST----DTGLSGPSEVLEDNESIDEMLGSVRNTYSLAN-KVRKILKQILDSATIGNRANPK-----S-SPFS 1147 (1598)
T ss_pred CCCCCccccc----chhccCcccccccccchhhcccccccccchhh-HHHHHHHHhcccccccccccCC-----C-CCCc
Confidence 0000000000 00000000000000000011111111111110 1123345556666666543200 0 0000
Q ss_pred cccccccccccCCccchhhhccCcccccCCCcCcCCCCCCCCCCcccccCCCchhhhh-hhhccccccccccccccCCCC
Q 000278 1222 DSSTVAVMTEGLDLEDHMEVQTGAKVTQSLSPALSSKGPDNMEEPVAWFRMPFLNFYH-SLNKNFLSSSQKLDTMSGYNP 1300 (1731)
Q Consensus 1222 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~k~~~~~~~~p 1300 (1731)
.... ..+ .+.. ....+- ...+...|++.|+.+++. ...++.....++........|
T Consensus 1148 ~~~~-------------~~~-------~~~~-~~~~~~--~e~~~~~~~e~~~~~~~~~~~~~e~~lns~~~~~~~~~~~ 1204 (1598)
T KOG0230|consen 1148 GQDH-------------STD-------LPLE-SNPIHV--LEKELSSWIEDPLTNMYYREATKELSLNSQKNSAETKEPP 1204 (1598)
T ss_pred hhhh-------------ccc-------cccc-cCCccc--cccccHHHHhhhhhhHhHHHHHHHHHhhcchhhcccccCC
Confidence 0000 000 0000 000000 111456799999998876 555554555566666667788
Q ss_pred cccCCcchhhccCCccccccCCCCCceEeecCCCCcceeeeccCCchhccccccccccccccCCCcccccccCccccccc
Q 000278 1301 IYFSSFRDSELKGGARLFLPVGVNDTVVPVYDDEPTSIIAYALVSTEYHVGLMVDDGEKTKEGGDVMSSFSLSDSVNLQS 1380 (1731)
Q Consensus 1301 ~~~s~~~~~~~~~~~~l~~P~~~~d~~V~V~edEPSSiIA~aL~S~dY~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 1380 (1731)
.++++.+...++.+++|++|++.+|.+|+||||||+|+|||||++++|..+. .+.... .+ ...| ++..
T Consensus 1205 k~~~s~~~s~~~~~~rLl~p~~~ndl~vp~~edpp~s~ia~al~s~~~~~q~-~~p~~s--------is--~~~S-~~~~ 1272 (1598)
T KOG0230|consen 1205 KYPSSESESEPESSSRLLLPLGLNDLVVPVYEDPPPSLIAYALSSKERINQE-SSPGLS--------IS--FSLS-NLQG 1272 (1598)
T ss_pred cCcccccccccccccceeccccCCcccCCcccCCCchhhhhhhcchhhccCC-CCCCcc--------cc--cccc-cccc
Confidence 8888877666788999999999999999999999999999999998888776 321100 00 0011 0000
Q ss_pred ccchhhhh-hhhccccCCcccccccccCCCccccCCccCc--CCccCceEEecCCCCCcceeEEEEEecHHHHHHHHHHh
Q 000278 1381 HLSADELT-LDLYRSLGSTDESILSLSGSRSSLILDPLSY--TKAFHPKVSFKDDGPLGQVKYSVTCYYARRFEALRKIC 1457 (1731)
Q Consensus 1381 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~y~p~~F~~LR~~~ 1457 (1731)
...+.. ....++-..+.. ++.++......+.+.. ....|++++|++ |+++|+|+||||++|++||+.|
T Consensus 1273 --~~s~~~e~~~~~~~sl~~s---~l~~s~~~~~e~l~~~~~~~~~h~~~~f~e----gk~k~svk~~yAe~F~~LR~~c 1343 (1598)
T KOG0230|consen 1273 --RLSKISEFDDTKSESLDNS---GLESSSYRRGENLQKSKLETRTHLEYQFSE----GKAKYSVKCYYAEQFRALRKIC 1343 (1598)
T ss_pred --chhhhhhhhhhhhcccccc---ccchhhhcchhhccccccccccceeeeccC----CceEEEEEEEehhhHHHHHHhh
Confidence 000000 000000001110 1111111111111222 456788888876 5689999999999999999999
Q ss_pred CCChHHHHHhhcccccCCCCCCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeeeeeEEE
Q 000278 1458 CPSELDYVRSLSRCKKWGAKGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFAPEYFKYLSESISTGSPTCLAKILGIYQ 1537 (1731)
Q Consensus 1458 ~~~~~~y~~Sl~~~~~~~~~gGKSgs~F~~T~D~rfiiKti~~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~ 1537 (1731)
|.++.+||+||+||.+|.++||||||+|+||.|+|||||+|++.|+++|++|||+||+||.++++++.||+||||||+||
T Consensus 1344 ~~sEe~fIrSLsRc~~W~aqGGKSgs~F~KTlDDRFIiKq~sk~EleSFikFAP~YFkYl~~s~~~~~PT~LAKIlGiyq 1423 (1598)
T KOG0230|consen 1344 CPSEEDFIRSLSRCVKWEAQGGKSGSFFAKTLDDRFIIKQMSKTELESFIKFAPAYFKYLTESISQKSPTCLAKILGIYQ 1423 (1598)
T ss_pred CchHHHHHHHHhcCcccccCCCcccceeeccccchhhhhhccHHHHHHHHhhhHHHHHHHHHHHhcCCcchhhhhheeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCceeeeeEEEeecccCCCCceeeeecCCccccccCCCCCCCcccccchhHhhhCCCCCeeeChHHHHHHHHH
Q 000278 1538 VTTKHLKGGRESKMDVLVMENLLFSRSVTQLYDLKGSSRSRYNPDSSGSNKVLLDQNLIEAMPTSPIFVGNKAKRLLERA 1617 (1731)
Q Consensus 1538 i~~~~~~~g~~~k~~~iVMeNlf~~~~i~~~yDLKGS~~~R~~~~~~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~ 1617 (1731)
|.+|+.++|++.|+++||||||||+++++|+||||||+|||+++.+++.+.||+|+||+++++++||||++++|+.|.++
T Consensus 1424 V~vK~~~sgke~K~DvmVMENLfY~r~vsRifDLKGS~RnR~v~~t~~~d~VLLDeNlVe~~~~sPIfV~~~sK~lL~~a 1503 (1598)
T KOG0230|consen 1424 VSVKSPKSGKETKMDVMVMENLFYGRKVSRIFDLKGSLRNRYVPTTSGADEVLLDENLVEMMWTSPIYVGSHSKRLLRRA 1503 (1598)
T ss_pred EEEecCCCCceeEeeeeeehhhhhccccceeeeccchhhhccCCCCCCCceEEecHHHHhhhhcCCeeehHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccCCcccccceEEEecCcceEEEeeeehhhccchhhhhhHhhhhccccCCCCCCCCcccChHHHHHHHHHHH
Q 000278 1618 VWNDTAFLASIDVMDYSLLVGVDEENHQLVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTVISPKQYKKRFRKAM 1697 (1731)
Q Consensus 1618 l~~Dt~FL~~~nvMDYSLLvGi~~~~~~~~~GIID~L~~yt~~KklE~~~K~~~~~~g~~~~~~Tvv~P~~Y~~RF~~~m 1697 (1731)
|||||.||+++||||||||||||++++|||+||||||||||||||||+|||..| +||+++..||||+|++|++||++||
T Consensus 1504 iwNDT~FLas~~VMDYSLLVGvD~e~~ELvlGIIDfiRtYTWDKkLESWVK~sG-l~gpk~~~PTVVSP~qYK~RFRkAM 1582 (1598)
T KOG0230|consen 1504 IWNDTSFLASINVMDYSLLVGVDDENNELVLGIIDFIRTYTWDKKLESWVKSSG-LGGPKNKQPTVVSPEQYKTRFRKAM 1582 (1598)
T ss_pred HhcchHHhhhcccceeeeEEEeeCCCCeEEEEehHhhhhhhhhhhhhhheeccc-cccCCCCCCceeCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 6788999999999999999999999
Q ss_pred HhhcccCCCcccCCcc
Q 000278 1698 TTYFLMVPDQWFPLST 1713 (1731)
Q Consensus 1698 ~~yf~~vpd~W~~~~~ 1713 (1731)
++||++|||+|+++|.
T Consensus 1583 d~YfL~VPD~Wtg~g~ 1598 (1598)
T KOG0230|consen 1583 DTYFLMVPDQWTGLGV 1598 (1598)
T ss_pred hheeeecCCcccCCCC
Confidence 9999999999999763
No 2
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=9.4e-73 Score=654.07 Aligned_cols=373 Identities=34% Similarity=0.519 Sum_probs=316.4
Q ss_pred CCccccccCC-----CCCceEeecCCCCcceeeeccCCchhccccccccccccccCCCcccccccCcccccccccchhhh
Q 000278 1313 GGARLFLPVG-----VNDTVVPVYDDEPTSIIAYALVSTEYHVGLMVDDGEKTKEGGDVMSSFSLSDSVNLQSHLSADEL 1387 (1731)
Q Consensus 1313 ~~~~l~~P~~-----~~d~~V~V~edEPSSiIA~aL~S~dY~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 1387 (1731)
.|.++.+|.+ +.|+.|+++||||||.|||+|+++||+.+++.-+ .+ +..+.. +. ....
T Consensus 226 n~~p~~~~s~p~~~~~s~S~~iir~~~pss~~a~~~s~~d~~~k~mr~r-~s--e~~De~----------~l----~~~~ 288 (612)
T COG5253 226 NWKPLVYPSCPSEHIFSDSDVIIREDEPSSLIAFCLSTSDYRNKMMRLR-DS--ETMDER----------LL----NGMP 288 (612)
T ss_pred CCCCccCCCCCCCCCcCccccccccCCcchhhhccccchhHHHHHHhhh-hh--hcchhh----------hc----cccc
Confidence 3344444444 5788899999999999999999999999983311 11 000000 00 0011
Q ss_pred hhhhccccCCcccccccccCCCccccCCccCcCCccCceEEecCCCCCcceeEEEEEecHHHHHHHHHHhCCChHHHHHh
Q 000278 1388 TLDLYRSLGSTDESILSLSGSRSSLILDPLSYTKAFHPKVSFKDDGPLGQVKYSVTCYYARRFEALRKICCPSELDYVRS 1467 (1731)
Q Consensus 1388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~p~~F~~LR~~~~~~~~~y~~S 1467 (1731)
...+++++...++++++++.... .....|...+..|.+++|.. +++.|+|++|||++|++||++||+++. |+.+
T Consensus 289 le~gh~n~~~synmltgirvtls-r~e~iM~~~tdth~~e~~~e----g~~~~s~K~y~~e~Fr~lR~l~g~~~a-lvsl 362 (612)
T COG5253 289 LEGGHRNPQESYNMLTGIRVTLS-RIEEIMIKKTDTHLNEQFEE----GLYEFSCKDYFPEVFRELRALCGCDEA-LVSL 362 (612)
T ss_pred cccccccchhhhhhhhhhHHHHH-HHHHHhcCCcCccchhhccc----cceeeeHHhhCHHHHHHHHHHhCCcHH-HHHH
Confidence 23467888888888888874321 12335677779999999987 458999999999999999999999886 9999
Q ss_pred hcccccCCCCCCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeeeeeEEEEEeec-cCCC
Q 000278 1468 LSRCKKWGAKGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFAPEYFKYLSESISTGSPTCLAKILGIYQVTTKH-LKGG 1546 (1731)
Q Consensus 1468 l~~~~~~~~~gGKSgs~F~~T~D~rfiiKti~~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~i~~~~-~~~g 1546 (1731)
+++|..|...|||||||||||.|.|||||||++.|+..|..++-.|+.|+.. +|.|+||||||+|+|.++. ...+
T Consensus 363 ~sryil~E~~~GKSGSff~~trD~kfIiKti~hsE~~~~r~~~~eY~~~V~~----np~T~l~ki~G~yrv~~~~s~~~~ 438 (612)
T COG5253 363 LSRYILWESNGGKSGSFFLFTRDYKFIIKTISHSEHICFRPMIFEYYVHVLF----NPLTLLCKIFGFYRVKSRSSISSS 438 (612)
T ss_pred HhhhheeccCCCcccceEEEeccchhhhhhhhhhhHHHHHHHHHHHHHHHHc----CchHHHHHHhceeEEecccccccc
Confidence 9999999999999999999999999999999999996666665555555554 4779999999999999987 4567
Q ss_pred ceeeeeEEEeecccCCCCceeeeecCCccccccCCCCCCCcccccchhHhhhCCCCCeeeChHHHHHHHHHHHhhhcccc
Q 000278 1547 RESKMDVLVMENLLFSRSVTQLYDLKGSSRSRYNPDSSGSNKVLLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTAFLA 1626 (1731)
Q Consensus 1547 ~~~k~~~iVMeNlf~~~~i~~~yDLKGS~~~R~~~~~~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~ 1626 (1731)
+..|+||||||||||++.|+++||||||++||++..++....||+|+|.++.++++|+++....|+.|+.|||+|+.||+
T Consensus 439 k~~K~~fiVMeNlf~~~~i~~ifDLKGS~~Nr~ve~~gk~~s~l~~mndv~wI~es~~~~~g~~Kk~~~sqv~~Dv~fLs 518 (612)
T COG5253 439 KSRKIYFIVMENLFYPHGIHRIFDLKGSMRNRHVERTGKSMSVLLDMNDVEWIRESPKIVFGLKKKLLLSQVWNDVLFLS 518 (612)
T ss_pred ccceeEEEEecccCCCCCcceEEeccCchhhhhhhhhccccchhccchhHHHHHhCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred cCCcccccceEEEecCcceEEEe-eeehhhc-cchhhhhhHhhhhccccCCC-CCCCCcccChHHHHHHHHHHHHhhccc
Q 000278 1627 SIDVMDYSLLVGVDEENHQLVLG-IIDFMRQ-YTWDKHLETWVKASGILGGP-KNASPTVISPKQYKKRFRKAMTTYFLM 1703 (1731)
Q Consensus 1627 ~~nvMDYSLLvGi~~~~~~~~~G-IID~L~~-yt~~KklE~~~K~~~~~~g~-~~~~~Tvv~P~~Y~~RF~~~m~~yf~~ 1703 (1731)
++||||||||||||.++.+..|| |||++|+ |||||++|.|+|..+..|+. +...||+|+|.+|++||++||+.|++.
T Consensus 519 klniMDYSllVgi~~~~~~~~V~~I~d~i~t~~t~Dk~~~~gI~d~lt~~s~~k~~~~t~v~p~~y~nrf~~~~e~yi~~ 598 (612)
T COG5253 519 KLNIMDYSLLVGIDDEREEASVGLIIDFIRTRMTGDKKLESGIKDKLTVGSFTKRKEPTAVTPRQYKNRFRKAMEAYIDP 598 (612)
T ss_pred HhCccceeEEEEeccchhhcchHHHHhhhccccccceeeeeehhhhhccceeeecccceecCHHHHHHHHHHhHHHhhhc
Confidence 99999999999999999999999 9999999 99999999999999766643 457899999999999999999999999
Q ss_pred CCCcccCCc
Q 000278 1704 VPDQWFPLS 1712 (1731)
Q Consensus 1704 vpd~W~~~~ 1712 (1731)
+|+.|++-+
T Consensus 599 ~p~~~~~~~ 607 (612)
T COG5253 599 FPDKKTQEG 607 (612)
T ss_pred ccchhhhcc
Confidence 999999854
No 3
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=100.00 E-value=4.5e-67 Score=613.46 Aligned_cols=257 Identities=47% Similarity=0.822 Sum_probs=237.6
Q ss_pred CcceeEEEEEecHHHHHHHHHHhCCChHHHHHhhcccccCCCC-CCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHH
Q 000278 1435 LGQVKYSVTCYYARRFEALRKICCPSELDYVRSLSRCKKWGAK-GGKSNVFFAKTLDDRFIIKQVTKTELESFIKFAPEY 1513 (1731)
Q Consensus 1435 ~~~~~~~~~~y~p~~F~~LR~~~~~~~~~y~~Sl~~~~~~~~~-gGKSgs~F~~T~D~rfiiKti~~~E~~~f~~~~p~Y 1513 (1731)
.....|+|++|+|.+|++||++||+++++|+.||++|..|..+ ||||||+||+|.|+|||||||+++|++.|+++||+|
T Consensus 52 ~~~~~f~fk~Y~P~vF~~lR~~~gi~~~dy~~Sl~~~~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y 131 (313)
T cd00139 52 HLSADFKFKDYCPEVFRALRELFGIDEADYLRSLCRSPLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNY 131 (313)
T ss_pred CCCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhcCCCCccCCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999988865 999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCC-CceeeeeeeEEEEEeeccCCCceeeeeEEEeecccCC-CCceeeeecCCccccccCCCC--CCCccc
Q 000278 1514 FKYLSESISTGS-PTCLAKILGIYQVTTKHLKGGRESKMDVLVMENLLFS-RSVTQLYDLKGSSRSRYNPDS--SGSNKV 1589 (1731)
Q Consensus 1514 f~y~~~~~~~~~-~TlL~ki~G~y~i~~~~~~~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~v 1589 (1731)
|+||.+| + +|||+||||+|+|++++ +...++|||||+|||++ ..|+++||||||+++|.+... .....|
T Consensus 132 ~~~~~~n----~~~TLL~k~~Gl~~i~~~~---~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~v 204 (313)
T cd00139 132 YEYITQN----PQNTLLPKFFGLYRVKVKS---GTGKKVDFLVMENLFYSRLKIHRKYDLKGSTRNREASKKEKQKENPV 204 (313)
T ss_pred HHHHHhC----CCCcchhhheEEEEEEEcC---CCCceEEEEEEecCCCCCccceEEEECCCCCCCCCcCcccccCCccc
Confidence 9999986 6 89999999999999864 23457899999999998 799999999999999998763 346789
Q ss_pred ccchhHhhhCCCCCeeeChHHHHHHHHHHHhhhcccccCCcccccceEEEecCcceEEEeeeehhhccchhhhhhHhhhh
Q 000278 1590 LLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTAFLASIDVMDYSLLVGVDEENHQLVLGIIDFMRQYTWDKHLETWVKA 1669 (1731)
Q Consensus 1590 l~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~~~~~~GIID~L~~yt~~KklE~~~K~ 1669 (1731)
|||.||++.. +.+|+|+++.|+.|++||++||.||+++||||||||||||..+.+|++|||||||+|||+||+|+|+|+
T Consensus 205 lKD~df~~~~-~~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGi~~~~~i~~~GIID~L~~y~~~Kk~E~~~K~ 283 (313)
T cd00139 205 LKDLNLLEMI-EQPLFVGEHSKKALLTQIKRDCEFLESLNIMDYSLLVGIHDIRLVLYLGIIDILRTYTWDKKLEHWVKS 283 (313)
T ss_pred cchhhhHhhc-CceEEeCHHHHHHHHHHHHHHHHHHHHCCCcccceEEEEecCCceEEEEEEeeeeeCCHHHHHHHHHHH
Confidence 9999999876 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcccChHHHHHHHHHHHHhhcc
Q 000278 1670 SGILGGPKNASPTVISPKQYKKRFRKAMTTYFL 1702 (1731)
Q Consensus 1670 ~~~~~g~~~~~~Tvv~P~~Y~~RF~~~m~~yf~ 1702 (1731)
.+..+ +..||||+|++|++||++||++||+
T Consensus 284 ~~~~~---~~~iS~v~P~~Y~~RF~~fi~~~f~ 313 (313)
T cd00139 284 LGHDG---GKTPSVVSPEQYAKRFREFMDKYFL 313 (313)
T ss_pred hccCC---CCCcceECHHHHHHHHHHHHHHhcC
Confidence 84322 2679999999999999999999995
No 4
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=100.00 E-value=1.5e-65 Score=608.13 Aligned_cols=263 Identities=41% Similarity=0.689 Sum_probs=238.4
Q ss_pred cCceEEecCCCCCcceeEEEEEecHHHHHHHHHHhCCChHHHHHhhccccc-CCCCCCCcceeEEEecCCcEEEeecCHH
Q 000278 1423 FHPKVSFKDDGPLGQVKYSVTCYYARRFEALRKICCPSELDYVRSLSRCKK-WGAKGGKSNVFFAKTLDDRFIIKQVTKT 1501 (1731)
Q Consensus 1423 ~~~~~~f~~~~~~~~~~~~~~~y~p~~F~~LR~~~~~~~~~y~~Sl~~~~~-~~~~gGKSgs~F~~T~D~rfiiKti~~~ 1501 (1731)
.|.+++|... ..+|+|++|+|++|++||+++|+++++|++||++|.. |.++||||||+||+|.|+|||||||++.
T Consensus 17 ~~~~~~~~~~----~~~~~~~~Y~P~~F~~lR~~~~i~~~~y~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiiKti~~~ 92 (342)
T smart00330 17 GHLELTPSHG----SADFKFKDYCPEVFRNLRELFGIDPADYLRSLCRSPPLELSSGGKSGSFFYLSLDDRFIIKTVSKS 92 (342)
T ss_pred CcccccCCCC----CccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhCCCCccccCCCCCCCCEEEEecCCcEEEEecCHH
Confidence 3455666553 3689999999999999999999999999999999986 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCceeeeeeeEEEEEeeccCCCceeeeeEEEeecccC-CCCceeeeecCCccccccC
Q 000278 1502 ELESFIKFAPEYFKYLSESISTGSPTCLAKILGIYQVTTKHLKGGRESKMDVLVMENLLF-SRSVTQLYDLKGSSRSRYN 1580 (1731)
Q Consensus 1502 E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~i~~~~~~~g~~~k~~~iVMeNlf~-~~~i~~~yDLKGS~~~R~~ 1580 (1731)
|++.|+++||+||+||.+| ++|||+||||+|+|+++ +++..++|||||+|||+ +..|+++||||||+++|.+
T Consensus 93 E~~~l~~~lp~Y~~~~~~n----~~SlL~ki~Gly~i~~~---~~~~~~~~fiVM~NlF~~~~~i~~~yDLKGS~~~R~~ 165 (342)
T smart00330 93 EIKSLLPMLPNYYEHIVQN----PNTLLPKFFGLYRVKVK---GGTEKKIYFLVMENLFYSDLKVHRKYDLKGSTRGREA 165 (342)
T ss_pred HHHHHHHHHHHHHHHHHhC----CCcchhhhcEEEEEEEC---CCcceeEEEEEEecCCCCCCceeEEEECCCCCCCCCc
Confidence 9999999999999999875 79999999999999885 34456799999999999 6799999999999999998
Q ss_pred CC-CCCCcccccchhHhhhCCCCCeeeChHHHHHHHHHHHhhhcccccCCcccccceEEEecCcc---------------
Q 000278 1581 PD-SSGSNKVLLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTAFLASIDVMDYSLLVGVDEENH--------------- 1644 (1731)
Q Consensus 1581 ~~-~~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~~--------------- 1644 (1731)
.. ......||||.||.+. .+.+|+|+++.|..|++||++||.||+++||||||||||||..+.
T Consensus 166 ~~~~~~~~~vlkD~df~~~-~~~~i~l~~~~k~~l~~ql~~D~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~ 244 (342)
T smart00330 166 DKKKVKELPVLKDLDLVEM-WNQPIYVDPLAKKALLKQIKRDCEFLESLKIMDYSLLVGIHDIERGQREEIELPPVYGSD 244 (342)
T ss_pred CccccCCCCcccccchhhc-cCCeEEECHHHHHHHHHHHHHHHHHHHHccchhhhhhhccccccccchhccccccccccc
Confidence 65 3346789999999986 678999999999999999999999999999999999999996432
Q ss_pred ---------------------------------------------eEEEeeeehhhccchhhhhhHhhhhccccCCCCCC
Q 000278 1645 ---------------------------------------------QLVLGIIDFMRQYTWDKHLETWVKASGILGGPKNA 1679 (1731)
Q Consensus 1645 ---------------------------------------------~~~~GIID~L~~yt~~KklE~~~K~~~~~~g~~~~ 1679 (1731)
+|+||||||||+|||+||+|||+|+.+. + +.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vy~iGIID~Lq~Y~~~KklE~~~K~~~~-~---~~ 320 (342)
T smart00330 245 ESPSSESSNGGKAPDITGNLLVSNSPDGDGPFGGIPARAIRARRVVLYLGIIDILQTYTWDKKLEHWVKSIGH-D---GK 320 (342)
T ss_pred ccccccccccCCCccccccccccccccccccccccccccccCCceEEEEEEEEEEEeCCHhHHHHHHHHHhcc-C---CC
Confidence 7999999999999999999999999742 2 36
Q ss_pred CCcccChHHHHHHHHHHHHhhc
Q 000278 1680 SPTVISPKQYKKRFRKAMTTYF 1701 (1731)
Q Consensus 1680 ~~Tvv~P~~Y~~RF~~~m~~yf 1701 (1731)
.||||+|++|++||++||++||
T Consensus 321 ~iS~V~P~~Y~~RF~~fi~~~F 342 (342)
T smart00330 321 TISVVHPEQYAKRFRDFMDKYF 342 (342)
T ss_pred CcceECHHHHHHHHHHHHHhhC
Confidence 7999999999999999999998
No 5
>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-59 Score=544.50 Aligned_cols=303 Identities=31% Similarity=0.477 Sum_probs=252.4
Q ss_pred hhhhhhccccCCcccccccccCCCccccCCcc------CcCCccCceEEecCCCC-----CcceeEEEEEecHHHHHHHH
Q 000278 1386 ELTLDLYRSLGSTDESILSLSGSRSSLILDPL------SYTKAFHPKVSFKDDGP-----LGQVKYSVTCYYARRFEALR 1454 (1731)
Q Consensus 1386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~f~~~~~-----~~~~~~~~~~y~p~~F~~LR 1454 (1731)
+++..++.++......+++|+.+.++..+.+. ......-+...|..+++ .....|+||+|+|.+||.||
T Consensus 33 ~~v~~~~~~~~l~~~lqlGI~~tVg~ls~v~~r~~~~~df~~~~k~~~~fp~~gs~~tp~h~~~~Fk~KdYcP~vFR~lR 112 (420)
T KOG0229|consen 33 EKVKKGHASYPLMLNLQLGIRHTVGSLSSVPERDLPVMDFPDVEKAYSKFPSEGSKFTPPHHSSDFKFKDYCPMVFRNLR 112 (420)
T ss_pred ceEecccccHHHHHHHHhcchhhhcccccCCcccCchhhCchhhhhheecCCCCCccCCCCCccccchhhcChHHHHHHH
Confidence 44455666666666667788866665543322 11112223335655553 33467999999999999999
Q ss_pred HHhCCChHHHHHhhcccccCC--CCCCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeee
Q 000278 1455 KICCPSELDYVRSLSRCKKWG--AKGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFAPEYFKYLSESISTGSPTCLAKI 1532 (1731)
Q Consensus 1455 ~~~~~~~~~y~~Sl~~~~~~~--~~gGKSgs~F~~T~D~rfiiKti~~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki 1532 (1731)
++|||+++||+.||++..... +++|||||+||.|.|+|||||||.++|++.++++||.||+|+.++ ++.|||+||
T Consensus 113 elFgId~~DYl~Slc~~~~l~e~sspGksGS~Fy~S~DdrFiIKTv~~~E~~~l~~mLp~Yy~~v~~~---~~~TLl~kf 189 (420)
T KOG0229|consen 113 ELFGIDPADYLLSLCGNPPLRELSSPGKSGSFFYLSYDDRFIIKTVRKSEVKVLLKMLPGYYQHVVEQ---NNRTLLPKF 189 (420)
T ss_pred HHhCCChHHHHHHHhcchhhhhccCCCCccceEEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHcc---CCceeehhh
Confidence 999999999999999876655 778999999999999999999999999999999999999999975 455999999
Q ss_pred eeEEEEEeeccCCCceeeeeEEEeecccCCC-CceeeeecCCccccccCCCC--CCCcccccchhHhhhCCCCCeeeChH
Q 000278 1533 LGIYQVTTKHLKGGRESKMDVLVMENLLFSR-SVTQLYDLKGSSRSRYNPDS--SGSNKVLLDQNLIEAMPTSPIFVGNK 1609 (1731)
Q Consensus 1533 ~G~y~i~~~~~~~g~~~k~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~--~~~~~vl~D~n~~~~~~~~~i~l~~~ 1609 (1731)
||+|+|+.. +|+ ++|||||+|||..+ .||++||||||+++|.+.+. .++..+|||.||++ ....|+|++.
T Consensus 190 ~Gly~vk~~---gg~--k~yfvVM~Nlf~~~~~iH~kyDLKGSt~~R~askke~~k~~pTlKDlDf~~--~~~~~~l~~~ 262 (420)
T KOG0229|consen 190 FGLYRVKPD---GGK--KIYFVVMNNLFPSRLKVHRKYDLKGSTVGREASKKEKIKELPTLKDLDFLN--EGQKLYLGKE 262 (420)
T ss_pred ceeEEEeeC---CCc--eEEEEEecccCCCccceeEEeecCCCcccccccchhhccCCCccccchhhc--cCceEecCHH
Confidence 999999874 454 58999999999986 99999999999999998653 25678999999998 3568999999
Q ss_pred HHHHHHHHHHhhhcccccCCcccccceEEEecC-----------------------------------------------
Q 000278 1610 AKRLLERAVWNDTAFLASIDVMDYSLLVGVDEE----------------------------------------------- 1642 (1731)
Q Consensus 1610 ~k~~l~~~l~~Dt~FL~~~nvMDYSLLvGi~~~----------------------------------------------- 1642 (1731)
.++.|+.||++||+||++++|||||||||||..
T Consensus 263 ~~~~l~~ql~~Dce~Le~~~IMDYSLLvGiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~p 342 (420)
T KOG0229|consen 263 AKKALLKQLKRDCEFLESLKIMDYSLLVGIHDRDRGQAEKEELEPQEDESEREQRLSSASPEDVLTSTASPSIQLGANMP 342 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhheeeeeeccccccchhhcCCCCCccccccccccccccccCCCCCcccccCCCCCC
Confidence 999999999999999999999999999999831
Q ss_pred ----------------------cceEEEeeeehhhccchhhhhhHhhhhccccCCCCCCCCcccChHHHHHHHHHHHHhh
Q 000278 1643 ----------------------NHQLVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTVISPKQYKKRFRKAMTTY 1700 (1731)
Q Consensus 1643 ----------------------~~~~~~GIID~L~~yt~~KklE~~~K~~~~~~g~~~~~~Tvv~P~~Y~~RF~~~m~~y 1700 (1731)
+..||+||||+||.|+..||+||.+|+. ..+ ...||+|+|++|++||++||.+.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~v~y~GIIDILq~Y~~~KK~EH~~Ksl--~~d--~~tIS~v~P~~Ys~RF~dFi~~~ 418 (420)
T KOG0229|consen 343 ARAGEERVDRMEYAPAQNSGGYDVVLYIGIIDILQDYDIKKKLEHAYKSL--QHD--PDTISAVDPKFYAKRFLDFISNI 418 (420)
T ss_pred CccccccccccccccccccCcceEEEEEEeehhhhhcchhhHHHHHHhhh--ccC--CceeeccCHHHHHHHHHHHHHhh
Confidence 1248999999999999999999999997 433 35799999999999999999998
Q ss_pred cc
Q 000278 1701 FL 1702 (1731)
Q Consensus 1701 f~ 1702 (1731)
|.
T Consensus 419 ~~ 420 (420)
T KOG0229|consen 419 FF 420 (420)
T ss_pred cC
Confidence 73
No 6
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=2.3e-56 Score=564.38 Aligned_cols=300 Identities=25% Similarity=0.360 Sum_probs=249.8
Q ss_pred hhhhhhhccccCCcccccccccCCCccccCCcc---C---cCCccCceEEecCCCC---Cc--ceeEEEEEecHHHHHHH
Q 000278 1385 DELTLDLYRSLGSTDESILSLSGSRSSLILDPL---S---YTKAFHPKVSFKDDGP---LG--QVKYSVTCYYARRFEAL 1453 (1731)
Q Consensus 1385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~f~~~~~---~~--~~~~~~~~y~p~~F~~L 1453 (1731)
++++..+++++..+.+++++|+.+.+...+.+. . .....-+++.|..+++ +. ...|+|++|+|.+|++|
T Consensus 338 g~~i~~gh~~~~l~~~~~~GIr~sv~~~~~~~~~~l~~~DF~~~~~~~~~fp~~gs~~tp~h~~~~fkfkdY~P~vFr~L 417 (765)
T PLN03185 338 GETIIKGHRSYDLMLSLQLGIRYTVGKITPIQRREVRPSDFGPRASFWMNFPKAGSQLTPSHQSEDFKWKDYCPMVFRNL 417 (765)
T ss_pred CcEEecCcCcHHHHHHHHHhHHHHhccccccCCccCChhhCcceEEEEEEcCcccCccCCCCccCceEEEEECHHHHHHH
Confidence 445666788887777888888755444333211 1 1112234567887652 22 35799999999999999
Q ss_pred HHHhCCChHHHHHhhccccc--CCCCCCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHHHHHHhhcCCCCCceeee
Q 000278 1454 RKICCPSELDYVRSLSRCKK--WGAKGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFAPEYFKYLSESISTGSPTCLAK 1531 (1731)
Q Consensus 1454 R~~~~~~~~~y~~Sl~~~~~--~~~~gGKSgs~F~~T~D~rfiiKti~~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~k 1531 (1731)
|++|||++++|+.||+.+.. +.+++|||||+||+|.|+|||||||+++|+++|+++||+||+||..+ ++|||+|
T Consensus 418 R~~fgId~~dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiIKTI~k~E~~~l~~iLp~Y~~hv~~n----~~TLL~k 493 (765)
T PLN03185 418 REMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEVKVLLRMLPDYHHHVKTY----ENTLITK 493 (765)
T ss_pred HHHhCCCHHHHHHhccCCccchhccCCCCcCCeEEEecCCcEEEEecCHHHHHHHHHHHHHHHHHHhhC----CCcchhh
Confidence 99999999999999987654 45799999999999999999999999999999999999999999874 8899999
Q ss_pred eeeEEEEEeeccCCCceeeeeEEEeecccCC-CCceeeeecCCccccccCCCC-CCCcccccchhHhhhCCCCCeeeChH
Q 000278 1532 ILGIYQVTTKHLKGGRESKMDVLVMENLLFS-RSVTQLYDLKGSSRSRYNPDS-SGSNKVLLDQNLIEAMPTSPIFVGNK 1609 (1731)
Q Consensus 1532 i~G~y~i~~~~~~~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~-~~~~~vl~D~n~~~~~~~~~i~l~~~ 1609 (1731)
|||||+|+.. +| .+++||||+|||+. ..|+++||||||+++|.+... ...+.||||.||. .+|+|+++
T Consensus 494 f~Gl~~i~~~---~g--~k~~fvVM~NlF~~~~~I~~~yDLKGSt~~R~~~k~~~~~~~tlKDlD~~-----~~~~l~~~ 563 (765)
T PLN03185 494 FFGLHRIKPS---SG--QKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADKVEIDENTTLKDLDLN-----YSFYLEPS 563 (765)
T ss_pred heEEEEEEeC---CC--cEEEEEEEecCCCCCCccceEEECCCCCCCCCCccccccCCCeeeecCcC-----ceEeeCHH
Confidence 9999999763 34 35899999999997 499999999999999997542 2456889999984 37999999
Q ss_pred HHHHHHHHHHhhhcccccCCcccccceEEEecCc----------------------------------------------
Q 000278 1610 AKRLLERAVWNDTAFLASIDVMDYSLLVGVDEEN---------------------------------------------- 1643 (1731)
Q Consensus 1610 ~k~~l~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~---------------------------------------------- 1643 (1731)
.|+.|++||++||.||+++||||||||||||...
T Consensus 564 ~k~~l~~qL~~D~~FL~~~~IMDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (765)
T PLN03185 564 WRDALLRQIEIDSKFLEAQRIMDYSLLLGVHFRAPQHLRSLLPYSRSITADGLEVVAEEDTIEDEELSYPEGLVLVPRGA 643 (765)
T ss_pred HHHHHHHHHHHHHHHHhHCcCeecceEEEEEecChhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999998210
Q ss_pred -------------------------------------------------------------------ceEEEeeeehhhc
Q 000278 1644 -------------------------------------------------------------------HQLVLGIIDFMRQ 1656 (1731)
Q Consensus 1644 -------------------------------------------------------------------~~~~~GIID~L~~ 1656 (1731)
-+||+|||||||.
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~mpara~~~~~~~~~~~~~~~e~~d~~~~~giidilq~ 723 (765)
T PLN03185 644 DDGSTVPGPHIRGSRLRASAAGDEEVDLLLPGTARLQIQLGVNMPARAERIPGREDKEKQSFHEVYDVVLYLGIIDILQE 723 (765)
T ss_pred cccccCCCcccccccccccccCchhhhhccccccccchhhcccCchhhhcccccccccccccCcccceEEEEEEEEeecc
Confidence 0378999999999
Q ss_pred cchhhhhhHhhhhccccCCCCCCCCcccChHHHHHHHHHHHHhhcc
Q 000278 1657 YTWDKHLETWVKASGILGGPKNASPTVISPKQYKKRFRKAMTTYFL 1702 (1731)
Q Consensus 1657 yt~~KklE~~~K~~~~~~g~~~~~~Tvv~P~~Y~~RF~~~m~~yf~ 1702 (1731)
|+..|||||.+|++. . ....||+|+|+.|.+||++||.+.|+
T Consensus 724 y~~~k~~eh~~k~~~--~--~~~~is~v~p~~y~~rf~~f~~~~f~ 765 (765)
T PLN03185 724 YNMSKKIEHAYKSLQ--F--DSLSISAVDPTFYSKRFLEFIQKVFP 765 (765)
T ss_pred cchhHHHHHHHhhhc--c--CCCceeccChHHHHHHHHHHHHhhcC
Confidence 999999999999973 2 34679999999999999999999994
No 7
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=100.00 E-value=1.9e-55 Score=505.93 Aligned_cols=222 Identities=36% Similarity=0.633 Sum_probs=155.7
Q ss_pred hhcc--cccCCCCCCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeeeeeEEEEEeeccC
Q 000278 1467 SLSR--CKKWGAKGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFAPEYFKYLSESISTGSPTCLAKILGIYQVTTKHLK 1544 (1731)
Q Consensus 1467 Sl~~--~~~~~~~gGKSgs~F~~T~D~rfiiKti~~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~i~~~~~~ 1544 (1731)
||+. +..|..++|||||+||+|.|+|||||||+++|++.|+++||+||+||.++ |.|||+||||+|+|...
T Consensus 2 sl~~~~~~~~~~s~GKSGs~F~~T~D~kfiiKti~~~E~~~l~~~lp~Y~~~~~~~----~~SlL~r~~Gl~~i~~~--- 74 (252)
T PF01504_consen 2 SLCNLSSLSEKSSGGKSGSFFFFTSDGKFIIKTISKSEFKFLLKILPAYFEHMSEN----PNSLLPRFYGLYSIKKS--- 74 (252)
T ss_dssp ---------ES---SSSSS-EEE-TTSSEEEEEE-HHHHHHHHHHHHHHHHHHHHT----TTSSS--EEEEEEE-EE---
T ss_pred CccccccccccCCCCCccCEEEEeCCCCEEEEeCCHHHHHHHHHHHHHHHHHHHhC----cCchHHHHHHHheeccc---
Confidence 6654 36788999999999999999999999999999999999999999999986 67999999999999542
Q ss_pred CCceeeeeEEEeecccCC-CCceeeeecCCccccccCCCC--CCCcccccchhHhhhCCCCCeeeChHHHHHHHHHHHhh
Q 000278 1545 GGRESKMDVLVMENLLFS-RSVTQLYDLKGSSRSRYNPDS--SGSNKVLLDQNLIEAMPTSPIFVGNKAKRLLERAVWND 1621 (1731)
Q Consensus 1545 ~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~D 1621 (1731)
+| ..+++||||+|+|++ ..|+++||||||+++|.+... .....|+||.||.+.. .+|+|+++.+..|++||++|
T Consensus 75 ~~-~~~~~fvVM~N~f~~~~~i~~~yDLKGs~~~R~~~~~~~~~~~~~lkD~df~~~~--~~i~l~~~~~~~l~~ql~~D 151 (252)
T PF01504_consen 75 NG-KEKIYFVVMENLFYTPRNIHERYDLKGSTVGRKAKKKDREQTEPVLKDLDFIESK--RKIHLGPEQKEELLKQLERD 151 (252)
T ss_dssp TT--EEEEEEEEE-SS-SSS--SEEEEE--SSSSS-S-CHHHCSSS-EEEHHHHHHTT----SBS-SCHHHHHHHHHHHH
T ss_pred CC-ceeEEEEEECCCccCCcccceEEecCCcccCCCCCccccccccceeecccccccC--cEEEeChHHHHHHHHHHHHH
Confidence 24 467899999999998 799999999999999998641 2357899999999864 69999999999999999999
Q ss_pred hcccccCCcccccceEEEe------------------------cCcceEEEeeeehhhccchhhhhhHhhhhccccCCCC
Q 000278 1622 TAFLASIDVMDYSLLVGVD------------------------EENHQLVLGIIDFMRQYTWDKHLETWVKASGILGGPK 1677 (1731)
Q Consensus 1622 t~FL~~~nvMDYSLLvGi~------------------------~~~~~~~~GIID~L~~yt~~KklE~~~K~~~~~~g~~ 1677 (1731)
|.||+++|||||||||||+ ..+..|++|||||||+|||+|++|+++|+.+..+
T Consensus 152 ~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~s~~~~~vy~~GIID~L~~y~~~K~~E~~~K~~~~~~--- 228 (252)
T PF01504_consen 152 TEFLSSHNIMDYSLLVGIHNRDSNEEQENKSSFPSYAGGIMSEDGNEVYYLGIIDILQEYNWKKKLEHFFKSLIKCD--- 228 (252)
T ss_dssp HHHHHHTTEES-EEEEEEEH---HHHHHH-H---TTTTTTCCCETTEEEEEEEE-S-EETT-------------------
T ss_pred HHHHHhccccccceeEeeeeccccccccccccccccccceeecCCCeEEEEEEehheeeccHHHHHHHHHHHHhhcC---
Confidence 9999999999999999999 4678899999999999999999999999974332
Q ss_pred CCCCcccChHHHHHHHHHHHHhhc
Q 000278 1678 NASPTVISPKQYKKRFRKAMTTYF 1701 (1731)
Q Consensus 1678 ~~~~Tvv~P~~Y~~RF~~~m~~yf 1701 (1731)
+..+|||+|++|++||++||++||
T Consensus 229 ~~~iS~v~P~~Y~~RF~~~i~~~f 252 (252)
T PF01504_consen 229 GQDISCVPPEEYAERFIKFIESIF 252 (252)
T ss_dssp --SSS---HHHHHHHHHHHHHHH-
T ss_pred CCCCcccCHHHHHHHHHHHHHHhC
Confidence 367999999999999999999998
No 8
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.1e-48 Score=493.24 Aligned_cols=305 Identities=29% Similarity=0.457 Sum_probs=285.0
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCC-C----------------ch
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED-D----------------EE 307 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~-d----------------~~ 307 (1731)
++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++++... + ..
T Consensus 85 ~~GDGTt---t~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~ 161 (525)
T TIGR02344 85 EVGDGTT---SVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVS 161 (525)
T ss_pred hccCCcc---hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccch
Confidence 8999999 99999999999999999999999999999999999999999988776431 1 14
Q ss_pred hhHHHHHHHHHHHHHhcCcCCCC-CCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEecccc
Q 000278 308 SWLEIITSLSWEAATLLKPDMSK-GGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGAL 386 (1731)
Q Consensus 308 ~w~~~l~~L~~~A~~~V~~d~~~-~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~L 386 (1731)
.|.+.|+.|+++|+..|+++... ...+|+..||+|+|++||++.||++++|++|+|++.|++|+++++||||||++++|
T Consensus 162 ~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~L 241 (525)
T TIGR02344 162 RWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPL 241 (525)
T ss_pred hHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEeccc
Confidence 69999999999999999876322 24789888899999999999999999999999999999999999999999999999
Q ss_pred cccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHH
Q 000278 387 EYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISR 459 (1731)
Q Consensus 387 e~~r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr 459 (1731)
++.+.+ .+..++++++++|++|+++++++|++.+|+|||++++|+++|+++|.++||++++++++.+|+|||+
T Consensus 242 e~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~ 321 (525)
T TIGR02344 242 EYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIAR 321 (525)
T ss_pred ccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHH
Confidence 999876 3468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEcccccCCCCCCcee-eeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHHHH
Q 000278 460 CTGAQIVPSIDHISSPKLGY-CEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQ 538 (1731)
Q Consensus 460 ~TGA~Iissld~L~~~~LG~-C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~l~ 538 (1731)
+|||+++++++++++..||+ |+.|+++++++ ++|++|+||+.+.+|||+|||+|+.+|+|+||+++
T Consensus 322 ~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~-------------~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~ 388 (525)
T TIGR02344 322 ACGATIVNRPEELRESDVGTGCGLFEVKKIGD-------------EYFTFFTECKDPKACTILLRGASKDVLNEIERNLQ 388 (525)
T ss_pred HhCCeEecchhhCCHhhcCCcCCEEEEEEECC-------------eEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHH
Confidence 99999999999999999999 99999999865 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 539 YGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 539 dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
||++++++++++++|||||||+|+++.
T Consensus 389 DAl~~vk~~~~~~~vvpGGGa~e~~ls 415 (525)
T TIGR02344 389 DAMAVARNVLLEPKLLPGGGATEMAVS 415 (525)
T ss_pred HHHHHHHHHHhCCCcccCCCHHHHHHH
Confidence 999999999999999999999998654
No 9
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=6.7e-47 Score=478.93 Aligned_cols=304 Identities=23% Similarity=0.349 Sum_probs=283.2
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCC-Cc-----------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED-DE----------------- 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~-d~----------------- 306 (1731)
++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++++... +.
T Consensus 85 ~~GDGTt---t~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~ 161 (519)
T TIGR02339 85 EVGDGTT---TAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASA 161 (519)
T ss_pred HhCCCcc---cHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhcccccc
Confidence 8999999 99999999999999999999999999999999999999999988876432 11
Q ss_pred hhhHHHHHHHHHHHHHhcCcCCCCCC-CCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEeccc
Q 000278 307 ESWLEIITSLSWEAATLLKPDMSKGG-GMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGA 385 (1731)
Q Consensus 307 ~~w~~~l~~L~~~A~~~V~~d~~~~~-~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~ 385 (1731)
+.|.+.|++|+++|+..+++....+. .+|+ ++|+|+|++||++.||++++|++|++++.|++|+++++||||++++++
T Consensus 162 ~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~ 240 (519)
T TIGR02339 162 EVTKDKLANLVVEAVKQVAEKRGDGKYYVDL-DNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAP 240 (519)
T ss_pred chhHHHHHHHHHHHHHHHhhhccCCCcccCH-HHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEecc
Confidence 25779999999999999985321222 5888 899999999999999999999999999999999999999999999999
Q ss_pred ccccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHH
Q 000278 386 LEYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERIS 458 (1731)
Q Consensus 386 Le~~r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIA 458 (1731)
|||++.+ +++.++++++++|++|++++|++|++.|++|||++++|++.|+++|.++||++++++++.+|+|||
T Consensus 241 Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa 320 (519)
T TIGR02339 241 LEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLA 320 (519)
T ss_pred ccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHH
Confidence 9999885 568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHHHH
Q 000278 459 RCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQ 538 (1731)
Q Consensus 459 r~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~l~ 538 (1731)
++|||+++++++++++..||+|+.|++++++. +++++|+||..+.+|||+|||+|..+|+|+||+++
T Consensus 321 ~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~ 387 (519)
T TIGR02339 321 RATGAKIVSSIKEITESDLGYAGLVEERKVGD-------------DKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQ 387 (519)
T ss_pred HHhCCEEeCchhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999875 58999999998999999999999999999999999
Q ss_pred HHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 539 YGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 539 dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
||++++++++.+++|||||||+|+++.
T Consensus 388 DAl~~~~~~~~~~~vvpGGGa~e~~ls 414 (519)
T TIGR02339 388 DALHVVASALEDGKVVAGGGAVEIELA 414 (519)
T ss_pred HHHHHHHHHhcCCCEeeCCCHHHHHHH
Confidence 999999999999999999999998654
No 10
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-48 Score=441.41 Aligned_cols=302 Identities=28% Similarity=0.452 Sum_probs=285.7
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCC-Cc----------------h
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED-DE----------------E 307 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~-d~----------------~ 307 (1731)
||||||| ||++||+|+|..+..+++.++||..+++.|.+||...+..+.+++++.+. +. .
T Consensus 88 evgdgtt---svi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~ 164 (527)
T KOG0364|consen 88 EVGDGTT---SVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNS 164 (527)
T ss_pred cccCCce---eeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhh
Confidence 8999999 99999999999999999999999999999999999999999987776332 21 5
Q ss_pred hhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEeccccc
Q 000278 308 SWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALE 387 (1731)
Q Consensus 308 ~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~Le 387 (1731)
.|.+.+..|+++|+..|+.+ +|..+|+..|+||.||+||.+.+|++++|+.++|.+.|++|.+.++||||+|++||||
T Consensus 165 ~~~~~~~~lal~avk~V~~~--~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~Le 242 (527)
T KOG0364|consen 165 RWSDLICNLALDAVKTVGVE--NGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLE 242 (527)
T ss_pred hhcchhhhHHHHHHHHhhhc--cCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCcc
Confidence 89999999999999999976 5668999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccC-------hhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHHH
Q 000278 388 YQRVSNL-------LSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRC 460 (1731)
Q Consensus 388 ~~r~~~~-------~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr~ 460 (1731)
|.+.+++ -.++..+++-|+||+..++..|+..+|+||+++|+|++.|++||.++||++++++++.+..||||+
T Consensus 243 ykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~a 322 (527)
T KOG0364|consen 243 YKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIARA 322 (527)
T ss_pred CCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhhh
Confidence 9987744 457888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEcccccCCCCCCcee-eeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHHHHH
Q 000278 461 TGAQIVPSIDHISSPKLGY-CEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQY 539 (1731)
Q Consensus 461 TGA~Iissld~L~~~~LG~-C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~l~d 539 (1731)
+||.|+++.++|.+.+.|+ |+.|+++++++ ..|.||..|..|+.|||+|||++.++|+|++|.++|
T Consensus 323 cga~iv~rpedl~e~dvGt~agLf~~kK~gd-------------eyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqd 389 (527)
T KOG0364|consen 323 CGARIVNRPEDLPERDVGTGAGLFEVKKIGD-------------EYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQD 389 (527)
T ss_pred cCceeccChhhCchhccCcccceeeeeccCc-------------hhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhh
Confidence 9999999999999998995 99999999988 489999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEecCCCccCCCC
Q 000278 540 GIFAAYHLAVETSFLADEGASLPEL 564 (1731)
Q Consensus 540 al~a~~~l~lE~~~v~GgGa~~~~~ 564 (1731)
|+.+++|.+.+++++|||||+++.+
T Consensus 390 a~~varn~ii~PklvPGGGAtEMAv 414 (527)
T KOG0364|consen 390 AMGVARNVIINPKLVPGGGATEMAV 414 (527)
T ss_pred HHHHHHHhccCCcccCCccHHHHHH
Confidence 9999999999999999999999854
No 11
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.7e-46 Score=473.78 Aligned_cols=304 Identities=23% Similarity=0.352 Sum_probs=283.4
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCC-CCc----------------h
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDE-DDE----------------E 307 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~-~d~----------------~ 307 (1731)
++||||| |+++||++|++++..+++.|+||..|++||++|+..++..+++++.+.. .+. .
T Consensus 84 ~~GDGTt---t~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~ 160 (517)
T cd03343 84 EVGDGTT---TAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAE 160 (517)
T ss_pred HhCCChh---HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchh
Confidence 8999999 9999999999999999999999999999999999999999998887643 121 3
Q ss_pred hhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEeccccc
Q 000278 308 SWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALE 387 (1731)
Q Consensus 308 ~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~Le 387 (1731)
.|.+.|++|+++|+..++++......+|+ ++|+|+|++||+++||++++|++|++++.|+.|++.++||||++++++||
T Consensus 161 ~~~~~l~~l~~~A~~~v~~~~~~~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le 239 (517)
T cd03343 161 AAKDKLADLVVDAVLQVAEKRDGKYVVDL-DNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLE 239 (517)
T ss_pred hHHHHHHHHHHHHHHHhhhccCCCccccH-HHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEecccc
Confidence 57899999999999999764212236888 89999999999999999999999999999999999999999999999999
Q ss_pred ccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHHH
Q 000278 388 YQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRC 460 (1731)
Q Consensus 388 ~~r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr~ 460 (1731)
|.+.+ ++..++++++++|++|++++|++|++.|++|||++++|++.|++||.++||++++++++.+|+|||++
T Consensus 240 ~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~ 319 (517)
T cd03343 240 VKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARA 319 (517)
T ss_pred CCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHH
Confidence 99876 56789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHHHHHH
Q 000278 461 TGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQYG 540 (1731)
Q Consensus 461 TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~l~da 540 (1731)
|||+++++++++++..||+|+.|++++++. ++|++|+||..+.+|||+|||+|..+++|+||+++||
T Consensus 320 tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Da 386 (517)
T cd03343 320 TGAKIVTNIDDLTPEDLGEAELVEERKVGD-------------DKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDA 386 (517)
T ss_pred hCCEEecchhhCChhhCCccceEEEEEECC-------------eEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeEecCCCccCCCCC
Q 000278 541 IFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 541 l~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
++++++++.+++||||||++|+++.
T Consensus 387 l~~~~~~~~~~~vvpGGG~~e~~ls 411 (517)
T cd03343 387 LRVVADALEDGKVVAGGGAVEIELA 411 (517)
T ss_pred HHHHHHHHhCCCeeeCCCHHHHHHH
Confidence 9999999999999999999998654
No 12
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.4e-46 Score=471.90 Aligned_cols=304 Identities=17% Similarity=0.246 Sum_probs=282.1
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCC---Cc---------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED---DE--------------- 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~---d~--------------- 306 (1731)
++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++++... +.
T Consensus 92 ~~GDGTt---t~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~ 168 (526)
T cd03339 92 EIGDGTT---GVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKI 168 (526)
T ss_pred hhcCChh---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccc
Confidence 8999999 99999999999999999999999999999999999999999888876431 21
Q ss_pred -hhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEeccc
Q 000278 307 -ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGA 385 (1731)
Q Consensus 307 -~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~ 385 (1731)
..|.+.|+.++++|+..+... ++..+|+ ++|+|+|++||++.||++++|++|++++.|+.|++.++||||+|++++
T Consensus 169 ~~~~~~~~s~i~v~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~ 245 (526)
T cd03339 169 VSRCHRQFAEIAVDAVLSVADL--ERKDVNF-ELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCP 245 (526)
T ss_pred hhhHHHHHHHHHHHHHHHHhhc--CCCccch-HHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEec
Confidence 367899999999999988642 2335777 889999999999999999999999999999999999999999999999
Q ss_pred ccccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHH
Q 000278 386 LEYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERIS 458 (1731)
Q Consensus 386 Le~~r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIA 458 (1731)
||+.+.+ +++.+++.++++|+++++.++++|++.|++|||++++|++.|++||.++||++++++++.+|+|||
T Consensus 246 le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa 325 (526)
T cd03339 246 FEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIA 325 (526)
T ss_pred ccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHH
Confidence 9998764 457889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHHHH
Q 000278 459 RCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQ 538 (1731)
Q Consensus 459 r~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~l~ 538 (1731)
++|||++++++++++...||+|+.|+++.++.+ .++++||+||+.+.+|||+|||+|+.+|+|+||+++
T Consensus 326 ~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~-----------~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~ 394 (526)
T cd03339 326 IATGGRIVPRFEDLSPEKLGKAGLVREISFGTT-----------KDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLH 394 (526)
T ss_pred HHhCCEEecchhhCChhhcccCceEEEEEecCC-----------CcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 999999999999999999999999999998651 268999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 539 YGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 539 dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
||++++++++.++++||||||+|+++.
T Consensus 395 DAl~~~~~~~~~~~vvpGGGa~e~~ls 421 (526)
T cd03339 395 DALCVVRNLIRDNRIVYGGGAAEISCS 421 (526)
T ss_pred HHHHHHHHHhhCCCEEeCCCHHHHHHH
Confidence 999999999999999999999998653
No 13
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.6e-45 Score=463.61 Aligned_cols=304 Identities=19% Similarity=0.246 Sum_probs=277.5
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhc-cCcCCCC-Cc----------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVEN-LSIGDED-DE---------------- 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~-i~~~~~~-d~---------------- 306 (1731)
++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++ ++++... +.
T Consensus 77 ~~GDGTT---t~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~ 153 (527)
T cd03335 77 EVGDGTT---SVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKII 153 (527)
T ss_pred HhCCCcc---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhccccc
Confidence 8999999 9999999999999999999999999999999999999999985 6665431 21
Q ss_pred hhhHHHHHHHHHHHHHhcCcCCCCC-CCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEeccc
Q 000278 307 ESWLEIITSLSWEAATLLKPDMSKG-GGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGA 385 (1731)
Q Consensus 307 ~~w~~~l~~L~~~A~~~V~~d~~~~-~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~ 385 (1731)
..+.+.|++|+++|+..++.....+ ..+|+ ++|+|++++||++.+|++++|++|+++++|++|+++++|||||+++++
T Consensus 154 ~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~-~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~ 232 (527)
T cd03335 154 GADSDFFANMVVDAILAVKTTNEKGKTKYPI-KAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFN 232 (527)
T ss_pred chhHHHHHHHHHHHHHHhhcccccCCCccCH-HHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEecc
Confidence 2567999999999999996421122 24788 789999999999999999999999999999999999999999999999
Q ss_pred ccccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHH
Q 000278 386 LEYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERIS 458 (1731)
Q Consensus 386 Le~~r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIA 458 (1731)
|++.+.+ ++..+++.+.++|++++++++++|++.|++|||++++|++.|++||.++||++++++++.+|+|||
T Consensus 233 Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa 312 (527)
T cd03335 233 LQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIA 312 (527)
T ss_pred CCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHH
Confidence 9998765 567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEcccccCCC------CCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHH
Q 000278 459 RCTGAQIVPSIDHIS------SPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKK 532 (1731)
Q Consensus 459 r~TGA~Iissld~L~------~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~e 532 (1731)
++|||+++++++.++ +..||+|+.|+++++++ ++|++|+||+.+.+|||+|||+|+.+|+|
T Consensus 313 ~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~g~~~~~~~TIllrG~t~~~l~e 379 (527)
T cd03335 313 KATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGD-------------DELILIKGTKKRSSASIILRGANDFMLDE 379 (527)
T ss_pred HHhCCEEecChhhcCcccccCHhhCccCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEeCCcHHHHHH
Confidence 999999999986653 34899999999999875 58999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 533 VKHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 533 vKr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
+||+++||++++++++.++++||||||+|+++.
T Consensus 380 ~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls 412 (527)
T cd03335 380 MERSLHDALCVVKRTLESNSVVPGGGAVETALS 412 (527)
T ss_pred HHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHH
Confidence 999999999999999999999999999998654
No 14
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.8e-45 Score=460.48 Aligned_cols=304 Identities=16% Similarity=0.246 Sum_probs=281.8
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCC---Cc---------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED---DE--------------- 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~---d~--------------- 306 (1731)
++||||| |+++||++|++++.++++.|+||..|++||..|+..++..+++++++... +.
T Consensus 96 ~~GDGTt---tvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~ 172 (532)
T TIGR02343 96 EIGDGTT---GVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKI 172 (532)
T ss_pred HhcCCcc---cHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccch
Confidence 8999999 99999999999999999999999999999999999999999988876422 11
Q ss_pred -hhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEeccc
Q 000278 307 -ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGA 385 (1731)
Q Consensus 307 -~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~ 385 (1731)
..+.+.|+.|+++|+..+... ....+|+ ++|+|+|++||++.||++++|++|++++.|+.|++.++||||+|++++
T Consensus 173 ~~~~~~~ls~i~~~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~ 249 (532)
T TIGR02343 173 VSKCHRRFAEIAVDAVLMVADM--ERRDVDF-DLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCP 249 (532)
T ss_pred hhHHHHHHHHHHHHHHHhhhhc--CCCcCCH-HHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEee
Confidence 357899999999999988642 2346888 899999999999999999999999999999999999999999999999
Q ss_pred ccccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHH
Q 000278 386 LEYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERIS 458 (1731)
Q Consensus 386 Le~~r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIA 458 (1731)
||+.+.+ +++.+++.++++|+++++.++++|++.|++|||++++|++.|++||.++||.+++++++.+|+|||
T Consensus 250 le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia 329 (532)
T TIGR02343 250 FEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIA 329 (532)
T ss_pred ccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHH
Confidence 9999774 457888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHHHH
Q 000278 459 RCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQ 538 (1731)
Q Consensus 459 r~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~l~ 538 (1731)
++|||+++++++++++..||+|+.|+++.++.+ .+++++|+||+.+..|||+|||+|+.+++|+||+++
T Consensus 330 ~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~-----------~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~ 398 (532)
T TIGR02343 330 IATGGRIVPRFEELSEDKLGKAGLVREISFGTT-----------KDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIH 398 (532)
T ss_pred HHhCCEEecccccCCHhHCcccceEEEEEecCC-----------cceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 999999999999999999999999999998752 258999999999899999999999999999999999
Q ss_pred HHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 539 YGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 539 dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
||++++++++.++++||||||+|+++.
T Consensus 399 DAl~~v~~~i~~~~vvpGGGa~e~~ls 425 (532)
T TIGR02343 399 DALCVVRNLIKNSRIVYGGGAAEISCS 425 (532)
T ss_pred HHHHHHHHHHhCCCEEeCcCHHHHHHH
Confidence 999999999999999999999998654
No 15
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-44 Score=456.81 Aligned_cols=301 Identities=20% Similarity=0.283 Sum_probs=279.0
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCC--CCCc----------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGD--EDDE---------------- 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~--~~d~---------------- 306 (1731)
++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++++. ..+.
T Consensus 85 ~~GDGTT---tvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~ 161 (531)
T TIGR02347 85 ITGDGTT---STVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLP 161 (531)
T ss_pred hhcCcHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccc
Confidence 8999999 999999999999999999999999999999999999999999988542 2221
Q ss_pred hhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEecccc
Q 000278 307 ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGAL 386 (1731)
Q Consensus 307 ~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~L 386 (1731)
..+.+.|++|+++|+..++++ +..+|+ +.|+|+++.||+..||++++|++|++++.++.|+++++|||||+++++|
T Consensus 162 ~~~~~~ls~iv~~Av~~v~~~---~~~i~~-~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~l 237 (531)
T TIGR02347 162 IDLADQLTEIVVDAVLAIKKD---GEQIDL-FMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSL 237 (531)
T ss_pred hhhHHHHHHHHHHHHHHHhhc---CCCCCh-hHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCC
Confidence 267899999999999999863 335787 7799999999999999999999999999999999999999999999999
Q ss_pred cccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcC-------CC---EEEEcccccHHHHHHHHHcCceeeccC
Q 000278 387 EYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHH-------PD---VLLVEKSVSRFAQEYLLAKNVSLVLNT 449 (1731)
Q Consensus 387 e~~r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~-------pn---VVlv~k~Vs~~Al~~L~~~gI~~v~~V 449 (1731)
++.+.+ .+..++..++++|++|+++++++|+..+ |+ ||+++++|++.|++||.++||++++++
T Consensus 238 e~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv 317 (531)
T TIGR02347 238 EYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRA 317 (531)
T ss_pred CCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccC
Confidence 999754 5678899999999999999999999976 36 999999999999999999999999999
Q ss_pred ChhHHHHHHHHhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHH
Q 000278 450 RRPLLERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDE 529 (1731)
Q Consensus 450 k~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~ 529 (1731)
++.+|+|||++|||++++++++++++.||+|+.|+++.++. ++|++|+||..+..|||+|||+|+.+
T Consensus 318 ~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~TI~lrG~t~~~ 384 (531)
T TIGR02347 318 KRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGE-------------EKYTFIEEVKNPKSCTILIKGPNDHT 384 (531)
T ss_pred CHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECC-------------eEEEEEEcCCCCCeEEEEEeCCCHHH
Confidence 99999999999999999999999999999999999998765 57999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 530 LKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 530 L~evKr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
|+|+||+++||++|+++++.++++||||||+|+++.
T Consensus 385 l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls 420 (531)
T TIGR02347 385 IKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAY 420 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHH
Confidence 999999999999999999999999999999998654
No 16
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.3e-44 Score=458.34 Aligned_cols=297 Identities=19% Similarity=0.293 Sum_probs=277.2
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCC----c--------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDD----E-------------- 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d----~-------------- 306 (1731)
++||||| |+|+||++|++++.++++.|+||..|++||++|+..++..+++++++...+ .
T Consensus 96 ~~GDGTT---tvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk 172 (533)
T PTZ00212 96 EVGDGTT---SVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSK 172 (533)
T ss_pred hhCCchh---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhccc
Confidence 8999999 999999999999999999999999999999999999999999988764321 1
Q ss_pred --hhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEecc
Q 000278 307 --ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGG 384 (1731)
Q Consensus 307 --~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~ 384 (1731)
..|.+.|++|+++|+..+.. .+|+ ++|+|++++||++.||++++|+|+++++.+ .|+++++||||||+++
T Consensus 173 ~~~~~~~~l~~i~~~av~~i~~------~~~~-~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i~n~kIll~~~ 244 (533)
T PTZ00212 173 LLTVEKDHFAKLAVDAVLRLKG------SGNL-DYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRLENCKILVANT 244 (533)
T ss_pred ccchhHHHHHHHHHHHHHHHhc------cCCc-cceEEEEecCcCccccEEEEeEEEecccCC-CCCccccCCcEEEEeC
Confidence 35789999999999998864 3566 789999999999999999999999999876 5899999999999999
Q ss_pred cccccccc--------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHH
Q 000278 385 ALEYQRVS--------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLER 456 (1731)
Q Consensus 385 ~Le~~r~~--------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~Ler 456 (1731)
+|||.+.+ +++.++..+.++|++++++++.+|++.+++||+++++|++.|+++|.++||++++++++.+|+|
T Consensus 245 ~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~r 324 (533)
T PTZ00212 245 PMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMER 324 (533)
T ss_pred CCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHH
Confidence 99999886 5688898899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHH
Q 000278 457 ISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHV 536 (1731)
Q Consensus 457 IAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~ 536 (1731)
||++|||+++++++++++.+||+|+.|++..++. ++|++|+||..+.+|||+|||+|+.+|+|+||+
T Consensus 325 Ia~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~ 391 (533)
T PTZ00212 325 LAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGE-------------DKLIRFSGCAKGEACTIVLRGASTHILDEAERS 391 (533)
T ss_pred HHHHhCCEEeecCCCCCHHHccCCceEEEEEECC-------------eEEEEEEccCCCCEEEEEEECCChhHHHHHHHH
Confidence 9999999999999999999999999999888764 589999999989999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 537 VQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 537 l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
++||++++++++.++++||||||+|+++.
T Consensus 392 i~DAl~vv~~~i~~~~vVpGGGa~e~~ls 420 (533)
T PTZ00212 392 LHDALCVLSQTVKDTRVVLGGGCSEMLMA 420 (533)
T ss_pred HHHHHHHHHHHhhCCCEeeCCCHHHHHHH
Confidence 99999999999999999999999998654
No 17
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-44 Score=458.45 Aligned_cols=298 Identities=21% Similarity=0.326 Sum_probs=277.3
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCC-----c-------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDD-----E------------- 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d-----~------------- 306 (1731)
++||||| |+|+||++|++++.++++.|+||..|++||.+|+..++..+++++++...+ .
T Consensus 85 ~~GDGTt---t~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~s 161 (522)
T cd03340 85 EVGDGTT---SVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNS 161 (522)
T ss_pred HhCCChh---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhcc
Confidence 8999999 999999999999999999999999999999999999999999987764321 1
Q ss_pred ---hhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCC---CceeecCCeEE
Q 000278 307 ---ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRR---MASKMEKPRLL 380 (1731)
Q Consensus 307 ---~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~---M~~~i~NprIL 380 (1731)
..+.+.|++|+++|+..+++ .+|. ++|+|++++||++.||++++|++|+++++++. |+++++|||||
T Consensus 162 K~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIl 234 (522)
T cd03340 162 KLIASEKEFFAKMVVDAVLSLDD------DLDL-DMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKIL 234 (522)
T ss_pred CcchhHHHHHHHHHHHHHHHhcc------cCCh-hHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEE
Confidence 24789999999999999975 2465 79999999999999999999999999999764 69999999999
Q ss_pred Eeccccccccc-------ccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhH
Q 000278 381 ILGGALEYQRV-------SNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPL 453 (1731)
Q Consensus 381 ll~~~Le~~r~-------~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~ 453 (1731)
+++++||+.+. .+.+.+++.++++|++++.+++++|++.|++||+++++|++.|++||.++||+++.++++.+
T Consensus 235 l~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~ 314 (522)
T cd03340 235 LLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEED 314 (522)
T ss_pred EEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHH
Confidence 99999999875 35677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHH
Q 000278 454 LERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKV 533 (1731)
Q Consensus 454 LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~ev 533 (1731)
|+|||++|||+++++++++++..||+|+.|+++++++ ++|++|+||+.+.+|||+|||++..+++|+
T Consensus 315 l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ 381 (522)
T cd03340 315 LKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGG-------------ERYNIFTGCPKAKTCTIILRGGAEQFIEEA 381 (522)
T ss_pred HHHHHHHHCCEEeeccccCCccccccceEEEEEEECC-------------EEEEEEECCCCCceEEEEEECCCHHHHHHH
Confidence 9999999999999999999999999999999988754 689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 534 KHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 534 Kr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
||+++||++++++++.+++|||||||+|+++.
T Consensus 382 er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls 413 (522)
T cd03340 382 ERSLHDAIMIVRRAIKNDSVVAGGGAIEMELS 413 (522)
T ss_pred HHHHHHHHHHHHHHhcCCCEEECcCHHHHHHH
Confidence 99999999999999999999999999998654
No 18
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.7e-44 Score=455.13 Aligned_cols=303 Identities=18% Similarity=0.245 Sum_probs=280.6
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCC-CCc----------------h
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDE-DDE----------------E 307 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~-~d~----------------~ 307 (1731)
++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++++.. .+. .
T Consensus 77 ~~GDGTt---t~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~ 153 (515)
T cd03338 77 EAGDGTT---SVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVS 153 (515)
T ss_pred HhcCCcc---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccch
Confidence 8999999 9999999999999999999999999999999999999999999887643 121 2
Q ss_pred hhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCC-CceeecCCeEEEecccc
Q 000278 308 SWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRR-MASKMEKPRLLILGGAL 386 (1731)
Q Consensus 308 ~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~-M~~~i~NprILll~~~L 386 (1731)
.|.+.|+.|+++|+..|+++. .++.+|+ ++|+|.++.||++.||++++|++|++++.|+. ||+.++||||++++|+|
T Consensus 154 ~~~~~ls~li~~A~~~v~~~~-~~~~~d~-~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~l 231 (515)
T cd03338 154 QYSSLLAPIAVDAVLKVIDPA-TATNVDL-KDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCL 231 (515)
T ss_pred hhHHHHHHHHHHHHHHhhccc-ccCcCCH-HHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccc
Confidence 488999999999999998642 2247898 78999999999999999999999999999986 59999999999999999
Q ss_pred cccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc-----cHHHHHHHHHcCceeeccCChhHH
Q 000278 387 EYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSV-----SRFAQEYLLAKNVSLVLNTRRPLL 454 (1731)
Q Consensus 387 e~~r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~V-----s~~Al~~L~~~gI~~v~~Vk~~~L 454 (1731)
|+.+.+ +++.+++.++++|+++++.++++|++.|++|||++++| ++.|+++|.++||.+++++++.+|
T Consensus 232 e~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~L 311 (515)
T cd03338 232 SPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEI 311 (515)
T ss_pred cccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHH
Confidence 998764 45779999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHHHhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCC-CCceEEEecCCCHHHHHHH
Q 000278 455 ERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPK-PLGCTILLRGADGDELKKV 533 (1731)
Q Consensus 455 erIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~-~~g~TIlLRG~t~~~L~ev 533 (1731)
+|||++|||++++++++++...||+|+.|+++++++ +++++|+||+. +.+|||+|||+|+.+++|+
T Consensus 312 erIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~-------------~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~ 378 (515)
T cd03338 312 EFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGD-------------GKIVKITGVKNPGKTVTILVRGSNKLVLDEA 378 (515)
T ss_pred HHHHHHHCCEEecccccCCHhhCCCCceEEEEEECC-------------eEEEEEEecCCCCceEEEEEeCCcHHHHHHH
Confidence 999999999999999999999999999999999764 58999999987 6999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 534 KHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 534 Kr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
||+++||++++++++.++++||||||+|+++.
T Consensus 379 ~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls 410 (515)
T cd03338 379 ERSLHDALCVIRCLVKKRALIPGGGAPEIEIA 410 (515)
T ss_pred HHHHHHHHHHHHHHhhCCCEEECCCHHHHHHH
Confidence 99999999999999999999999999998654
No 19
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.6e-44 Score=452.29 Aligned_cols=297 Identities=17% Similarity=0.234 Sum_probs=276.8
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCC---C-c--------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED---D-E-------------- 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~---d-~-------------- 306 (1731)
++||||| |+|+||++|++++.++++.|+||..|++||.+|+..++..+++++++... + .
T Consensus 84 ~~GDGTT---tvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk 160 (517)
T cd03336 84 EVGDGTT---SVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSK 160 (517)
T ss_pred HhCCChh---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhcccc
Confidence 8999999 99999999999999999999999999999999999999999988876421 1 1
Q ss_pred --hhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEecc
Q 000278 307 --ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGG 384 (1731)
Q Consensus 307 --~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~ 384 (1731)
..|.+.|++|+++|+..++. .+|+ ++|+|++++||++.||++++|+|+++++.+ .|+++++||||+++++
T Consensus 161 ~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~n~kIli~~~ 232 (517)
T cd03336 161 ILTQDKEHFAELAVDAVLRLKG------SGNL-DAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIENAKILIANT 232 (517)
T ss_pred ccchhHHHHHHHHHHHHHHhhc------cCCc-cceeEEEccCCCccceEEEeeEEEecccCC-CCCCeeccccEEEEec
Confidence 24889999999999999853 4666 789999999999999999999999999876 5899999999999999
Q ss_pred cccccccc--------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHH
Q 000278 385 ALEYQRVS--------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLER 456 (1731)
Q Consensus 385 ~Le~~r~~--------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~Ler 456 (1731)
+|||.+.+ +++.++..+.++|++++++++.+|++.++++|++++.|++.|++||.++||++++++++.+|+|
T Consensus 233 ~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~r 312 (517)
T cd03336 233 PMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVER 312 (517)
T ss_pred CCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHH
Confidence 99998875 3788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHH
Q 000278 457 ISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHV 536 (1731)
Q Consensus 457 IAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~ 536 (1731)
||++|||+++++++++++.+||+|+.|++..+++ ++|++|+||+++.+|||+|||+|+.+|+|+||+
T Consensus 313 Ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~ 379 (517)
T cd03336 313 LALVTGGEIASTFDHPELVKLGTCKLIEEIMIGE-------------DKLIRFSGVAAGEACTIVLRGASQQILDEAERS 379 (517)
T ss_pred HHHHhCCEEecccCCCCcccccccceEEEEEECC-------------eEEEEEEccCCCceEEEEEeCCCHHHHHHHHHH
Confidence 9999999999999999999999999999888764 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 537 VQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 537 l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
++||++++++++.++++||||||+|+++.
T Consensus 380 i~Dal~~~~~~i~~~~vvpGGGa~e~~ls 408 (517)
T cd03336 380 LHDALCVLAQTVKDTRVVLGGGCSEMLMA 408 (517)
T ss_pred HHHHHHHHHHHHhCCCEEeCCCHHHHHHH
Confidence 99999999999999999999999998654
No 20
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=3.8e-44 Score=414.95 Aligned_cols=259 Identities=58% Similarity=0.915 Sum_probs=240.4
Q ss_pred HHHHHHHHHhccCcCCCCCchhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecc
Q 000278 287 ALVAQLLQVENLSIGDEDDEESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVA 366 (1731)
Q Consensus 287 al~~~Ll~l~~i~~~~~~d~~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a 366 (1731)
++..||+..+++. +.+.|.+.|++|+++|+..+.++...++.+|+.++|+|+|++||++.||++++|+||+|+++
T Consensus 2 ~~~~~~~~~~~~~-----~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~ 76 (261)
T cd03334 2 ALLAQLLKDEGIS-----NDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVA 76 (261)
T ss_pred hHHHHHHHhcCCC-----ChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCC
Confidence 5778999999886 46799999999999999999764333457999778999999999999999999999999999
Q ss_pred cCCCceeecCCeEEEecccccccccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceee
Q 000278 367 HRRMASKMEKPRLLILGGALEYQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLV 446 (1731)
Q Consensus 367 ~k~M~~~i~NprILll~~~Le~~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v 446 (1731)
|++||++++||||+|++|+|||+++++++.+++.++++|++|++++|++|++.||||||++++|+++|++||.++||+++
T Consensus 77 ~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v 156 (261)
T cd03334 77 HKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLV 156 (261)
T ss_pred CccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHhCCeEcccc-cCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCC
Q 000278 447 LNTRRPLLERISRCTGAQIVPSI-DHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGA 525 (1731)
Q Consensus 447 ~~Vk~~~LerIAr~TGA~Iissl-d~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~ 525 (1731)
++|++.+|+|||++|||++++++ +.++++.||+|+.|++++++++. ...++++||+||+.+.+|||+|||+
T Consensus 157 ~~v~~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~--------~~~~~~~~~~~~~~~~~~TIlLRG~ 228 (261)
T cd03334 157 LNVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEH--------GRSKTLMFFEGCPKELGCTILLRGG 228 (261)
T ss_pred EecCHHHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcC--------CCceeEEEEecCCCCceeEEEEECC
Confidence 99999999999999999999995 48899999999999999987521 1237899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCeEecCCC
Q 000278 526 DGDELKKVKHVVQYGIFAAYHLAVETSFLADEG 558 (1731)
Q Consensus 526 t~~~L~evKr~l~dal~a~~~l~lE~~~v~GgG 558 (1731)
|...|+|+||+++||++++|++++|.+++.+-|
T Consensus 229 t~~~lde~eR~i~Dal~v~~~~~le~~~~~~~~ 261 (261)
T cd03334 229 DLEELKKVKRVVEFMVFAAYHLKLETSFLADEF 261 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC
Confidence 999999999999999999999999999888753
No 21
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.6e-44 Score=451.48 Aligned_cols=303 Identities=18% Similarity=0.241 Sum_probs=280.1
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCC-Cc----------------h
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED-DE----------------E 307 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~-d~----------------~ 307 (1731)
++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++++... +. .
T Consensus 78 ~~GDGTt---t~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~ 154 (517)
T TIGR02342 78 EAGDGTT---SVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVS 154 (517)
T ss_pred HhCCCcc---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccch
Confidence 8999999 99999999999999999999999999999999999999999988876431 11 4
Q ss_pred hhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeeccc-CCCceeecCCeEEEecccc
Q 000278 308 SWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAH-RRMASKMEKPRLLILGGAL 386 (1731)
Q Consensus 308 ~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~-k~M~~~i~NprILll~~~L 386 (1731)
.|.+.|+.|+++|+..+.++ +..+.+|+ +.|+|+++.||++.||++++|++|++++.+ ++||+.++||||++++|+|
T Consensus 155 ~~~~~ls~l~~~a~~~v~~~-~~~~~~~~-~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~L 232 (517)
T TIGR02342 155 QYSSLLAPLAVDAVLKVIDP-ENDKNVDL-NDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQI 232 (517)
T ss_pred hHHHHHHHHHHHHHHHHhcc-ccCCccCH-HHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCC
Confidence 78999999999999999863 22347888 899999999999999999999999999999 5999999999999999999
Q ss_pred cccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc-----cHHHHHHHHHcCceeeccCChhHH
Q 000278 387 EYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSV-----SRFAQEYLLAKNVSLVLNTRRPLL 454 (1731)
Q Consensus 387 e~~r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~V-----s~~Al~~L~~~gI~~v~~Vk~~~L 454 (1731)
++.+.+ .++.+++.++++|+++++.+|++|++.|++|||++++| +++|+++|.++||.+++++++.+|
T Consensus 233 e~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~L 312 (517)
T TIGR02342 233 SPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEV 312 (517)
T ss_pred CCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHH
Confidence 998754 56788999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCC-CceEEEecCCCHHHHHHH
Q 000278 455 ERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKP-LGCTILLRGADGDELKKV 533 (1731)
Q Consensus 455 erIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~-~g~TIlLRG~t~~~L~ev 533 (1731)
+|||++|||++++++++++..+||+|+.|++.++++ +++++|++|+.+ ..|||+|||+|+.+++|+
T Consensus 313 erIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~-------------~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~ 379 (517)
T TIGR02342 313 EFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDG-------------GKIIKITGIQNAGKTVTVLLRGSNKLVIDEA 379 (517)
T ss_pred HHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECC-------------eEEEEEEccCCCCceEEEEEeCCcHHHHHHH
Confidence 999999999999999999999999999999877654 579999999874 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 534 KHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 534 Kr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
||+++||++++++++.++++||||||+|+++.
T Consensus 380 er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls 411 (517)
T TIGR02342 380 ERSLHDALCVIRSLVKKRGLIPGGGAPEIEIA 411 (517)
T ss_pred HHHHHHHHHHHHHHhhCCCEEECcCHHHHHHH
Confidence 99999999999999999999999999998654
No 22
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.8e-43 Score=448.77 Aligned_cols=304 Identities=18% Similarity=0.244 Sum_probs=276.4
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcc-CcCCCC-Cc----------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENL-SIGDED-DE---------------- 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i-~~~~~~-d~---------------- 306 (1731)
++||||| |+++||++|++++.++++.|+||..|++||..|+..++..+++. +++... +.
T Consensus 81 ~~GDGTT---t~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~ 157 (536)
T TIGR02340 81 EVGDGTT---SVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKII 157 (536)
T ss_pred HhCCChh---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccc
Confidence 8999999 99999999999999999999999999999999999999999863 555321 11
Q ss_pred hhhHHHHHHHHHHHHHhcCcCCCCC-CCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEeccc
Q 000278 307 ESWLEIITSLSWEAATLLKPDMSKG-GGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGA 385 (1731)
Q Consensus 307 ~~w~~~l~~L~~~A~~~V~~d~~~~-~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~ 385 (1731)
..+.+.|++|+++|+..++.+...+ ..+|+ ++|+|+|++||++.||++++|++|++++.+++|+++++||||+|++++
T Consensus 158 ~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~ 236 (536)
T TIGR02340 158 GLDSDFFSNIVVDAVLAVKMTNENGETKYPI-KAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFN 236 (536)
T ss_pred hhhHHHHHHHHHHHHHHHhcccccCccccch-HHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecC
Confidence 2478999999999999996421122 25788 899999999999999999999999999999999999999999999999
Q ss_pred ccccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHH
Q 000278 386 LEYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERIS 458 (1731)
Q Consensus 386 Le~~r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIA 458 (1731)
|++.+.+ ++..+++.+.++|++++++++++|++.+++||+++++|++.|++||.++||.+++++++.+|+|||
T Consensus 237 L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa 316 (536)
T TIGR02340 237 LQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIA 316 (536)
T ss_pred CCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHH
Confidence 9998754 456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEcccccCC------CCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHH
Q 000278 459 RCTGAQIVPSIDHI------SSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKK 532 (1731)
Q Consensus 459 r~TGA~Iissld~L------~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~e 532 (1731)
++|||+++++++.+ +...||+|+.|++++++. ++|++|+||+.+.+|||+|||+|+.+++|
T Consensus 317 ~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~TIlirG~t~~~l~E 383 (536)
T TIGR02340 317 KATGGTLVSTLADLEGEETFDASYLGFADEVVEERIAD-------------DECILIKGTKGRKSASIILRGANDFMLDE 383 (536)
T ss_pred HHhCCEEecchhhcCccccccccccccCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEeCCcHHHHHH
Confidence 99999999998655 345699999999999875 57999999998899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 533 VKHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 533 vKr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
+||+++||++++++++.++++||||||+|+++.
T Consensus 384 ~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls 416 (536)
T TIGR02340 384 MERSLHDALCVVKRTLESNSVVPGGGAVETALS 416 (536)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHH
Confidence 999999999999999999999999999998653
No 23
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.2e-44 Score=450.04 Aligned_cols=299 Identities=20% Similarity=0.316 Sum_probs=278.0
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCC----C-c-------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED----D-E------------- 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~----d-~------------- 306 (1731)
++||||| |+|+||++|++++.++++.|+||..|++||.+|+..++..+++++++... + .
T Consensus 86 ~~GDGTT---t~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK 162 (522)
T TIGR02345 86 EVGDGTT---SVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSK 162 (522)
T ss_pred HhCCCch---hHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccc
Confidence 8999999 99999999999999999999999999999999999999999988876531 1 1
Q ss_pred --hhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCC---CceeecCCeEEE
Q 000278 307 --ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRR---MASKMEKPRLLI 381 (1731)
Q Consensus 307 --~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~---M~~~i~NprILl 381 (1731)
..+.+.|++|+++|+..++++ .+|+ ++|+|+++.||++.||++++|++|+++++++. |+++++||||||
T Consensus 163 ~~~~~~~~l~~l~~~A~~~v~~~-----~~~~-~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll 236 (522)
T TIGR02345 163 LIAHEKEFFSKMIVDAVLQLDID-----DLDL-KLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILL 236 (522)
T ss_pred cccchHHHHHHHHHHHHHHHhhc-----cCCh-hHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEE
Confidence 247899999999999999753 4777 79999999999999999999999999999774 599999999999
Q ss_pred ecccccccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHH
Q 000278 382 LGGALEYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLL 454 (1731)
Q Consensus 382 l~~~Le~~r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~L 454 (1731)
++++|++.+.+ +.+.+++.+++.|++++++++++|++.|++||+|+++|++.+++||.++||++++++++.+|
T Consensus 237 ~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl 316 (522)
T TIGR02345 237 LNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDL 316 (522)
T ss_pred EecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHH
Confidence 99999998764 56888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHH
Q 000278 455 ERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVK 534 (1731)
Q Consensus 455 erIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evK 534 (1731)
+|||++|||+++++++++++..||+|+.|+++++++ ++|++|+||+++.+|||+|||+|+.+|+|+|
T Consensus 317 ~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~-------------~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~ 383 (522)
T TIGR02345 317 KRVVKACGGSIQSTTSDLEADVLGTCALFEERQIGS-------------ERYNYFTGCPHAKTCTIILRGGAEQFIEEAE 383 (522)
T ss_pred HHHHHHhCCeEEcchhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCceEEEEEECCCHHHHHHHH
Confidence 999999999999999999999999999999888764 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 535 HVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 535 r~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
|+++||++++++++.++.+||||||+|+++.
T Consensus 384 r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls 414 (522)
T TIGR02345 384 RSLHDAIMIVRRALKARKIVAGGGAIEMELS 414 (522)
T ss_pred HHHHHHHHHHHHHhcCCCEEeCCCHHHHHHH
Confidence 9999999999999999999999999998654
No 24
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-43 Score=400.87 Aligned_cols=298 Identities=20% Similarity=0.314 Sum_probs=277.5
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCC-Cc-----------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED-DE----------------- 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~-d~----------------- 306 (1731)
||||||| |||+||+|+|++++.+++.|+||..|+++|++|...++..++++.+.... +.
T Consensus 89 EVGDGTT---SVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsS 165 (543)
T KOG0361|consen 89 EVGDGTT---SVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSS 165 (543)
T ss_pred cccCCce---eEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhh
Confidence 8999999 99999999999999999999999999999999999999999999887542 11
Q ss_pred ---hhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccC---CCceeecCCeEE
Q 000278 307 ---ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHR---RMASKMEKPRLL 380 (1731)
Q Consensus 307 ---~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k---~M~~~i~NprIL 380 (1731)
....++|++++++|+..+.. ..|. +.|.|||++||++.||.+|+||.|.|.+.+. ..|+++.|||||
T Consensus 166 KlI~~ek~fF~~MvVDAV~~ld~------~l~~-~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl 238 (543)
T KOG0361|consen 166 KLIRQEKEFFAKMVVDAVLTLDN------DLDL-NMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKIL 238 (543)
T ss_pred hhhhhhHHHHHHHHHHHHHhhcc------ccch-hhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEE
Confidence 36678999999999998863 2444 8899999999999999999999999998876 469999999999
Q ss_pred Eecccccccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhH
Q 000278 381 ILGGALEYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPL 453 (1731)
Q Consensus 381 ll~~~Le~~r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~ 453 (1731)
+|+..||..-.. ..+++++.++..||..|.+++++|...|.||||..-.|.++|.+||++++|.+..+|..++
T Consensus 239 ~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eD 318 (543)
T KOG0361|consen 239 LLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEED 318 (543)
T ss_pred EEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHH
Confidence 999999987432 5689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHH
Q 000278 454 LERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKV 533 (1731)
Q Consensus 454 LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~ev 533 (1731)
|.|+..++|+.|.++..++.+..||.|+.|+.+++|. .+|-+|+||++.+.||++|||+-++.+.|+
T Consensus 319 l~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~-------------eRyN~Fegcp~aktcTliLRGgaeqfieE~ 385 (543)
T KOG0361|consen 319 LNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGG-------------ERYNLFEGCPKAKTCTLILRGGAEQFIEET 385 (543)
T ss_pred HHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcc-------------hhhhhhcCCCccceeEEEEeccHHHHHHHH
Confidence 9999999999999999999999999999999998765 589999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 534 KHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 534 Kr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
+|+++||++++|.++++.++|+||||+++++.
T Consensus 386 eRSlHDAImIVrralkn~~vVaGGGaiEMElS 417 (543)
T KOG0361|consen 386 ERSLHDAIMIVRRALKNDSVVAGGGAIEMELS 417 (543)
T ss_pred hhhhhhHHHHHHHHhccCcEeeCCceeeehHH
Confidence 99999999999999999999999999999864
No 25
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.3e-43 Score=440.82 Aligned_cols=271 Identities=27% Similarity=0.432 Sum_probs=251.3
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCC-Cc----------------h
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED-DE----------------E 307 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~-d~----------------~ 307 (1731)
++||||| |+++||++|++++.+++++|+||..|++||.+|+...+..+++++++... +. +
T Consensus 85 ~~GDGTt---t~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~ 161 (480)
T cd03337 85 EVGDGTT---SVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVS 161 (480)
T ss_pred HhCCCcc---hhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcch
Confidence 8999999 99999999999999999999999999999999999999999988876431 21 4
Q ss_pred hhHHHHHHHHHHHHHhcCcCCCCC-CCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEecccc
Q 000278 308 SWLEIITSLSWEAATLLKPDMSKG-GGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGAL 386 (1731)
Q Consensus 308 ~w~~~l~~L~~~A~~~V~~d~~~~-~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~L 386 (1731)
.|.+.|++|+++|+..++++.... ..+|+..||+|++++||++.||++++|++|+++++|++|+++++||||||++|+|
T Consensus 162 ~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~L 241 (480)
T cd03337 162 RWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPL 241 (480)
T ss_pred hHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCc
Confidence 699999999999999998763222 3689888899999999999999999999999999999999999999999999999
Q ss_pred cccccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHHHhCCeEc
Q 000278 387 EYQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIV 466 (1731)
Q Consensus 387 e~~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr~TGA~Ii 466 (1731)
|| |||++++|++.|+++|.++||++++++++.+|+|||++|||+++
T Consensus 242 e~----------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii 287 (480)
T cd03337 242 EY----------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIV 287 (480)
T ss_pred ce----------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEe
Confidence 99 99999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcee-eeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 000278 467 PSIDHISSPKLGY-CEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQYGIFAAY 545 (1731)
Q Consensus 467 ssld~L~~~~LG~-C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~l~dal~a~~ 545 (1731)
+++++++++.||+ |+.|+++++++ +++++|+||+++.+|||+|||+|..+|+|+||+++||+++++
T Consensus 288 ~~~~~l~~~~LG~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~ 354 (480)
T cd03337 288 NRPEELTESDVGTGAGLFEVKKIGD-------------EYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVAR 354 (480)
T ss_pred cchhhCCHHHcCCcccEEEEEEeCC-------------eEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 66777777654 589999999999999999999999999999999999999999
Q ss_pred HHHhcCeEecCCCccCCCCC
Q 000278 546 HLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 546 ~l~lE~~~v~GgGa~~~~~~ 565 (1731)
+++.++++||||||+|+++.
T Consensus 355 ~~~~~~~~vpGGGa~E~~ls 374 (480)
T cd03337 355 NIILNPKLVPGGGATEMAVS 374 (480)
T ss_pred HHhcCCCEEeCCCHHHHHHH
Confidence 99999999999999998654
No 26
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.4e-42 Score=432.98 Aligned_cols=297 Identities=20% Similarity=0.256 Sum_probs=274.0
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCC----c--------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDD----E-------------- 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d----~-------------- 306 (1731)
++||||| |+|+||++|++++.++++.|+||..|++||.+|+...+..+++++++...+ .
T Consensus 85 ~~GDGTT---tvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~sk 161 (519)
T TIGR02341 85 EVGDGTT---SVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSK 161 (519)
T ss_pred hhCCchh---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhh
Confidence 8999999 999999999999999999999999999999999999999999888774321 1
Q ss_pred --hhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEecc
Q 000278 307 --ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGG 384 (1731)
Q Consensus 307 --~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~ 384 (1731)
..|.+.|+.|+++|+..+.. ..|+ +.|+|.+++||++.||++++|+|+++.+.+ .|+++++||||+++++
T Consensus 162 i~~~~~~~~s~l~~~av~~i~~------~~~~-~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Ili~~~ 233 (519)
T TIGR02341 162 ILSQHKDHFAQLAVDAVLRLKG------SGNL-DAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAKILIANT 233 (519)
T ss_pred hhhhHHHHHHHHHHHHHHHhcc------CCCh-hheEEEEccCCCcccceEEeeEEEeccCCC-CCceeeccccEEEEec
Confidence 35789999999999999853 1255 569999999999999999999999999876 6899999999999999
Q ss_pred ccccccccc--------ChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHH
Q 000278 385 ALEYQRVSN--------LLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLER 456 (1731)
Q Consensus 385 ~Le~~r~~~--------~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~Ler 456 (1731)
+|++.+.+. ++.++..+.+.|+++++++++.|++.++++|++++.|++.|+++|.++||++++++++.+|+|
T Consensus 234 ~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ 313 (519)
T TIGR02341 234 PMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIER 313 (519)
T ss_pred CCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHH
Confidence 999987552 466788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHH
Q 000278 457 ISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHV 536 (1731)
Q Consensus 457 IAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~ 536 (1731)
||++|||+++++++++++.+||+|+.|++..+++ ++|++|+||+.+..|||+|||+|+.+|+|+||+
T Consensus 314 ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~ 380 (519)
T TIGR02341 314 LALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGE-------------DKLLKFSGVKLGEACTIVLRGATQQILDESERS 380 (519)
T ss_pred HHHHhCCEEecccccCCccccccCceEEEEEECC-------------EEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHH
Confidence 9999999999999999999999999999887664 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 537 VQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 537 l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
++||++++++++.+++|||||||+|+++.
T Consensus 381 i~Dal~~~~~~~~~~~vvpGGGa~e~~ls 409 (519)
T TIGR02341 381 LHDALCVLSQTVKESRTVLGGGCSEMLMS 409 (519)
T ss_pred HHHHHHHHHHHHhCCCEEeCCCHHHHHHH
Confidence 99999999999999999999999998654
No 27
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-41 Score=427.10 Aligned_cols=279 Identities=19% Similarity=0.292 Sum_probs=256.0
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCC--CCc----------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDE--DDE---------------- 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~--~d~---------------- 306 (1731)
++||||| |+++||++|++++.++++.|+||..|++||++|+..++..+++++.+.. .+.
T Consensus 81 ~~GDGTT---t~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~ 157 (484)
T cd03342 81 ITGDGTT---SNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLH 157 (484)
T ss_pred HhCCChh---hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccc
Confidence 8999999 9999999999999999999999999999999999999999998877654 121
Q ss_pred hhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEecccc
Q 000278 307 ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGAL 386 (1731)
Q Consensus 307 ~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~L 386 (1731)
..|.+.|++|+++|+..++++ ++.+|+ +.|+|++++||++.||++++|++|++++.++.|+++++||||++++++|
T Consensus 158 ~~~~~~l~~l~~~A~~~v~~~---~~~~~~-~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~l 233 (484)
T cd03342 158 ADLADQLTEIVVDAVLAIYKP---DEPIDL-HMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSL 233 (484)
T ss_pred hhHHHHHHHHHHHHHHHHhhc---CCccCh-hHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCC
Confidence 357899999999999999863 347888 8899999999999999999999999999999999999999999999999
Q ss_pred cccccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHHHhCCeEc
Q 000278 387 EYQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIV 466 (1731)
Q Consensus 387 e~~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr~TGA~Ii 466 (1731)
++.+.+.... + ..+|||++++|++.|+++|.++||.+++++++.+|+|||++|||+++
T Consensus 234 e~~~~~~~~~-~---------------------~~~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii 291 (484)
T cd03342 234 EYEKTEVNSG-F---------------------FYSVVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAM 291 (484)
T ss_pred CCCccccCcE-E---------------------EEEEEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEe
Confidence 9987653211 1 02399999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 000278 467 PSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQYGIFAAYH 546 (1731)
Q Consensus 467 ssld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~l~dal~a~~~ 546 (1731)
++++++++..||+|+.|+++.++. ++|++|+||+.+..|||+|||+|+.+|+|+||+++||++|+++
T Consensus 292 ~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~ 358 (484)
T cd03342 292 NSVDDLSPECLGYAGLVYERTLGE-------------EKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKN 358 (484)
T ss_pred cccccCChhhCcccceEEEEEECC-------------eEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998765 5799999999999999999999999999999999999999999
Q ss_pred HHhcCeEecCCCccCCCCC
Q 000278 547 LAVETSFLADEGASLPELP 565 (1731)
Q Consensus 547 l~lE~~~v~GgGa~~~~~~ 565 (1731)
++.++++||||||+|+++.
T Consensus 359 ~~~~~~~vpGGGa~e~~ls 377 (484)
T cd03342 359 AIEDKCVVPGAGAFEVALY 377 (484)
T ss_pred HhcCCcEEeCCCHHHHHHH
Confidence 9999999999999998654
No 28
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8e-41 Score=423.40 Aligned_cols=300 Identities=17% Similarity=0.248 Sum_probs=273.6
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCc-CCC--CCc------------h--
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSI-GDE--DDE------------E-- 307 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~-~~~--~d~------------~-- 307 (1731)
++||||| |+|+||++|++++.+++++|+||..|++||.+|+..++..++++++ +.. .+. .
T Consensus 87 ~~GDGTT---t~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~ 163 (531)
T TIGR02346 87 EIGDGTN---LVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQ 163 (531)
T ss_pred hhCCChh---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhcccc
Confidence 8999999 9999999999999999999999999999999999999999988875 321 121 0
Q ss_pred -hhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEecccc
Q 000278 308 -SWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGAL 386 (1731)
Q Consensus 308 -~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~L 386 (1731)
+..+.|++|+++|+..++++ ..+.+|+ +.|+|+|+.||+..||++++|++|+++.. .|++.++||||+++++||
T Consensus 164 ~~~~~~ls~l~~~Ai~~v~~~--~~~~~~~-~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l 238 (531)
T TIGR02346 164 YGNEDFLAQLVAKACSTVMPK--NPENFNV-DNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVKNAKVAVFSCPL 238 (531)
T ss_pred CchHHHHHHHHHHHHHHHhhc--CCCcCCh-hHeeEEEecCCChhhceeEeeeEEeccCC--CCceeccCCCEEEEecCc
Confidence 23788999999999999864 2236888 78999999999999999999999999954 589999999999999999
Q ss_pred cccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHH
Q 000278 387 EYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISR 459 (1731)
Q Consensus 387 e~~r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr 459 (1731)
++.+.+ ++...+..+.+.|+++++.++++|++.|++|||++++|++.|+++|.++||.++++++..+|+|||+
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~ 318 (531)
T TIGR02346 239 DTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCK 318 (531)
T ss_pred CCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence 998765 4577788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCC-CCCceEEEecCCCHHHHHHHHHHHH
Q 000278 460 CTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCP-KPLGCTILLRGADGDELKKVKHVVQ 538 (1731)
Q Consensus 460 ~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~-~~~g~TIlLRG~t~~~L~evKr~l~ 538 (1731)
+|||++++++++++..+||+|+.|+++++++ +.+.+|++|. .+..|||+|||+|+.+++|+||+++
T Consensus 319 ~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~ 385 (531)
T TIGR02346 319 TVGATPLARLGAPQPEEIGYVDSVYVSEIGG-------------QKVTVFKQENGDSKISTIILRGSTKNLLDDIERAID 385 (531)
T ss_pred HHCCEEecccccCCHhHccccceEEEEEECC-------------EEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999754 4699999998 4789999999999999999999999
Q ss_pred HHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 539 YGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 539 dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
||++++++++.++++||||||+|+++.
T Consensus 386 DAl~~~k~ai~~~~vVpGGG~~e~~ls 412 (531)
T TIGR02346 386 DGVNVIKALVKDNRFLPGAGATEIELA 412 (531)
T ss_pred HHHHHHHHHhcCCCEEECcCHHHHHHH
Confidence 999999999999999999999998654
No 29
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.9e-40 Score=411.32 Aligned_cols=267 Identities=23% Similarity=0.322 Sum_probs=250.0
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCC-CCCc----------------h
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGD-EDDE----------------E 307 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~-~~d~----------------~ 307 (1731)
++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++++. ..+. .
T Consensus 77 ~~GDGTt---t~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~ 153 (464)
T cd00309 77 EVGDGTT---TVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVS 153 (464)
T ss_pred HhCCchh---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccc
Confidence 8999999 999999999999999999999999999999999999999999988762 1121 3
Q ss_pred hhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEeccccc
Q 000278 308 SWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALE 387 (1731)
Q Consensus 308 ~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~Le 387 (1731)
.|.+.|++|+++|+..++++.. .+|. ++|+|++++||++.||++++|++|++++.|+.|++.++||||++++++|+
T Consensus 154 ~~~~~l~~l~~~Ai~~v~~~~~---~~~~-~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le 229 (464)
T cd00309 154 GGDDFLGELVVDAVLKVGKENG---DVDL-GVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLE 229 (464)
T ss_pred cchHHHHHHHHHHHHHhccccC---cccc-ceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcc
Confidence 4999999999999999987532 4555 89999999999999999999999999999999999999999999999999
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHHHhCCeEcc
Q 000278 388 YQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIVP 467 (1731)
Q Consensus 388 ~~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr~TGA~Iis 467 (1731)
+ |||++++|++.|+++|.++||.+++++++.+|+|||++|||++++
T Consensus 230 ~----------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~ 275 (464)
T cd00309 230 Y----------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVS 275 (464)
T ss_pred e----------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEec
Confidence 9 999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Q 000278 468 SIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQYGIFAAYHL 547 (1731)
Q Consensus 468 sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~l~dal~a~~~l 547 (1731)
++++++...||+|+.|+++++++ +++++|+||..+.+|||+|||+|..+|+|+||+++||+++++++
T Consensus 276 ~~~~~~~~~lG~~~~v~~~~~g~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~ 342 (464)
T cd00309 276 RLEDLTPEDLGTAGLVEETKIGD-------------EKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAA 342 (464)
T ss_pred ccccCCcccCccccEEEEEEEcC-------------eeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 68999999998899999999999999999999999999999999
Q ss_pred HhcCeEecCCCccCCCCC
Q 000278 548 AVETSFLADEGASLPELP 565 (1731)
Q Consensus 548 ~lE~~~v~GgGa~~~~~~ 565 (1731)
+.+++|||||||+|+.+.
T Consensus 343 ~~~~~~vpGGGa~E~~ls 360 (464)
T cd00309 343 VEDGGIVPGGGAAEIELS 360 (464)
T ss_pred HHcCCcccCCcHHHHHHH
Confidence 999999999999998653
No 30
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.7e-39 Score=404.75 Aligned_cols=269 Identities=21% Similarity=0.304 Sum_probs=247.8
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCC---CCCc---------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGD---EDDE--------------- 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~---~~d~--------------- 306 (1731)
++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++++. ..+.
T Consensus 77 ~~GDGTT---t~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~ 153 (472)
T cd03341 77 EIGDGTN---LVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQ 153 (472)
T ss_pred hhCCChh---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccc
Confidence 8999999 999999999999999999999999999999999999999999887542 1221
Q ss_pred hhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEecccc
Q 000278 307 ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGAL 386 (1731)
Q Consensus 307 ~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~L 386 (1731)
.+|.+.|++|+++|+..++++ ..+.+|+ +.|+|+|++||+..||++++|++|+++.. .|+++++||||++++++|
T Consensus 154 ~~~~~~l~~l~~~a~~~~~~~--~~~~~~~-~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~n~~Ili~~~~L 228 (472)
T cd03341 154 YGNEDFLSPLVAEACISVLPE--NIGNFNV-DNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVKKAKVAVFSCPF 228 (472)
T ss_pred cchHHHHHHHHHHHHHHHhhc--cCCcCCh-hHeEEEEecCCCcccceEEeeEEEccccC--CCceeccCCcEEEEeccc
Confidence 147889999999999999874 2357888 78999999999999999999999988764 456999999999999999
Q ss_pred cccccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHHHhCCeEc
Q 000278 387 EYQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIV 466 (1731)
Q Consensus 387 e~~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr~TGA~Ii 466 (1731)
++ +++|||++++|++.|+++|.++||.+++++++.+|+|||++|||+++
T Consensus 229 e~-------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii 277 (472)
T cd03341 229 DI-------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPL 277 (472)
T ss_pred cC-------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 99 89999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCC-CCceEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 000278 467 PSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPK-PLGCTILLRGADGDELKKVKHVVQYGIFAAY 545 (1731)
Q Consensus 467 ssld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~-~~g~TIlLRG~t~~~L~evKr~l~dal~a~~ 545 (1731)
+++++++..+||+|+.|+++++++ +++++|+||.. +.+|||+|||+|+.+++|+||+++||+++++
T Consensus 278 ~~~~~l~~~~lG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~ 344 (472)
T cd03341 278 PRLGAPTPEEIGYCDSVYVEEIGD-------------TKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFK 344 (472)
T ss_pred cccccCCHhHCCCceEEEEEEECC-------------eeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999765 58999999987 8999999999999999999999999999999
Q ss_pred HHHhcCeEecCCCccCCCCC
Q 000278 546 HLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 546 ~l~lE~~~v~GgGa~~~~~~ 565 (1731)
+++.++++||||||+|+.+.
T Consensus 345 ~ai~~~~vVpGGG~~e~~ls 364 (472)
T cd03341 345 SLTKDGRFVPGAGATEIELA 364 (472)
T ss_pred HHhcCCCEEeCcCHHHHHHH
Confidence 99999999999999998653
No 31
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-39 Score=400.27 Aligned_cols=298 Identities=19% Similarity=0.195 Sum_probs=275.6
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCc---------------hhh
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDE---------------ESW 309 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~---------------~~w 309 (1731)
++||||| |+++||++|+++|..++++|+||..|.+||.+|...++..+++++.+...+. ..+
T Consensus 80 e~GDGTT---tavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~~~~~ 156 (524)
T COG0459 80 EAGDGTT---TAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSD 156 (524)
T ss_pred HhcCchH---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeeeccCh
Confidence 8999999 9999999999999999999999999999999999999999999987744322 245
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEee-ecccCCCc-eeecCCeEEEeccccc
Q 000278 310 LEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKK-NVAHRRMA-SKMEKPRLLILGGALE 387 (1731)
Q Consensus 310 ~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K-~~a~k~M~-~~i~NprILll~~~Le 387 (1731)
+.|+.|+++|+..|+.... |+ +.|++.+..||...|+++++|++|+| .+.|..|| +.++||+|||++++|+
T Consensus 157 -~~i~~lv~~Av~~v~~~~~-----d~-~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~ 229 (524)
T COG0459 157 -EEIGELVVEAVEKVGKEQS-----DL-DGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLE 229 (524)
T ss_pred -HHHHHHHHHHHHHhccccc-----cc-CCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccc
Confidence 8999999999999986421 66 78999999999999999999999999 67778999 8999999999999999
Q ss_pred ccccc-------cChhHHHHHHHHHH-HHHHHHHHHHHHcCCC-EEEEcccccHHHHHHHHHcCceeeccCChhHH-HHH
Q 000278 388 YQRVS-------NLLSSFDTLLQQEM-DHLKMAVAKIEAHHPD-VLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLL-ERI 457 (1731)
Q Consensus 388 ~~r~~-------~~~~sl~~il~qE~-e~L~~~V~kI~~~~pn-VVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~L-erI 457 (1731)
+.+.+ +....|..|+++|+ +.|..+|.+|+..+.| |++++++|++.+++||.+.+|.+++++++++| ++|
T Consensus 230 ~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l 309 (524)
T COG0459 230 IKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERL 309 (524)
T ss_pred cccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHH
Confidence 99875 45668999999999 9999999999999999 99999999999999999999999999999999 899
Q ss_pred HHHhCCeEcccccCCCCCCcee--eeEEEEEEEeccccccCCCCcccceEEEEEEcCCC--CCceEEEecCCCHHHHHHH
Q 000278 458 SRCTGAQIVPSIDHISSPKLGY--CEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPK--PLGCTILLRGADGDELKKV 533 (1731)
Q Consensus 458 Ar~TGA~Iissld~L~~~~LG~--C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~--~~g~TIlLRG~t~~~L~ev 533 (1731)
+++|||.+++.++++++..+|. |+.|+..++++ ..+.+|++|.. +..|||+|||+|+.+++|+
T Consensus 310 ~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~-------------~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~ 376 (524)
T COG0459 310 AKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGD-------------YDMEKLQERKAKAGGVATILVRGATEVELDEK 376 (524)
T ss_pred HHccCceEEeecccCceeecCccccceEEEeeccc-------------hhhhhhhhhhhcCCCeEEEEECCccHhHHHHH
Confidence 9999999999999999999999 99999998766 46889999985 7899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 534 KHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 534 Kr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
||+++|||++++++++++++|||||+++.++.
T Consensus 377 er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a 408 (524)
T COG0459 377 ERRIEDALNVVRAAVEEGKIVPGGGAAEIEAA 408 (524)
T ss_pred HHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHH
Confidence 99999999999999999999999999998653
No 32
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=8.5e-39 Score=403.55 Aligned_cols=297 Identities=27% Similarity=0.393 Sum_probs=275.5
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCC-c---------------hh
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDD-E---------------ES 308 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d-~---------------~~ 308 (1731)
++||||| ++++|+++|++++..+++.|+||..|++||..|+...+..+++++++...+ . ..
T Consensus 58 ~~GDGtt---s~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~ 134 (485)
T PF00118_consen 58 EVGDGTT---SVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSS 134 (485)
T ss_dssp HTSSHHH---HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGG
T ss_pred hhccccc---eeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhccccccccccc
Confidence 8899999 999999999999999999999999999999999999999999886664433 2 58
Q ss_pred hHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEecccccc
Q 000278 309 WLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEY 388 (1731)
Q Consensus 309 w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~Le~ 388 (1731)
|.+.|++++++|+..+..+ +|+ +.++|+++.||+..||++++|++|++++.++.|+++++||||++++++|++
T Consensus 135 ~~~~l~~li~~a~~~~~~~------~~~-~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~ 207 (485)
T PF00118_consen 135 WSDHLSKLIVDAIKSIKSN------FDL-DNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEY 207 (485)
T ss_dssp CHHHHHHHHHHHHHHHTTT------HHG-GGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSS
T ss_pred chhhhhhhHHHHHHhhccc------ccc-cchhhhhhccccccccccccceeeeccccccccccccccceEEeeeccccc
Confidence 8999999999999655432 666 569999999999999999999999999999999999999999999999999
Q ss_pred ccc------ccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHHHhC
Q 000278 389 QRV------SNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTG 462 (1731)
Q Consensus 389 ~r~------~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr~TG 462 (1731)
.+. .+...+++.+.++|+++++.++++|.+.+++|||++++|++.|+++|.++||.++.+|++.+|+|||++||
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg 287 (485)
T PF00118_consen 208 SKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATG 287 (485)
T ss_dssp CCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHT
T ss_pred ccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccC
Confidence 977 36688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEE--cCCCCCceEEEecCCCHHHHHHHHHHHHHH
Q 000278 463 AQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFE--GCPKPLGCTILLRGADGDELKKVKHVVQYG 540 (1731)
Q Consensus 463 A~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fe--gc~~~~g~TIlLRG~t~~~L~evKr~l~da 540 (1731)
|.+++++++++...+|+|+.+++..+++ ++|++|+ +|.....|||+|||++..+++++|++++||
T Consensus 288 ~~ii~~~~~l~~~~lG~~~~v~~~~i~~-------------~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~da 354 (485)
T PF00118_consen 288 ASIISSLDDLSDEDLGFCKSVEEREIGN-------------KKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDA 354 (485)
T ss_dssp SBEBSSCGGSTGGGSEEEEEEEEEEETS-------------SEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CcEecccccccchhhhhhhhhhhccccc-------------ccccccccccccccCceEEEeccccchhHHHHHHHHHHH
Confidence 9999999999988899999998888765 5899999 688899999999999999999999999999
Q ss_pred HHHHHHHHhcCeEecCCCccCCCC
Q 000278 541 IFAAYHLAVETSFLADEGASLPEL 564 (1731)
Q Consensus 541 l~a~~~l~lE~~~v~GgGa~~~~~ 564 (1731)
++++++++.++.+|||||++|..+
T Consensus 355 l~~~~~~~~~~~vvpGGG~~e~~l 378 (485)
T PF00118_consen 355 LKVLRSALKDGGVVPGGGATELHL 378 (485)
T ss_dssp HHHHHHHHHSSEEEETTTHHHHHH
T ss_pred HHHHHHhccCCceeecCcchhhhh
Confidence 999999999999999999999753
No 33
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-38 Score=354.35 Aligned_cols=296 Identities=20% Similarity=0.266 Sum_probs=271.3
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCc------------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDE------------------ 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~------------------ 306 (1731)
|+||||| ||++||++|++++++++.+++||..|+.||++|...++..+.+.++.+..+.
T Consensus 89 EvGDGTT---SV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SK 165 (527)
T KOG0363|consen 89 EVGDGTT---SVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSK 165 (527)
T ss_pred ccCCCce---ehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHH
Confidence 8999999 9999999999999999999999999999999999999999999888755432
Q ss_pred --hhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEecc
Q 000278 307 --ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGG 384 (1731)
Q Consensus 307 --~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~ 384 (1731)
....+.|+.|+++|+..++- .-|+ +.|.|.|+.||++.||++-+|++++|.+- -..|++++|||||+-+.
T Consensus 166 iLsq~kehFaelavdAV~rLkG------s~nL-~~IqIIK~~Gg~l~dSfLDeGFlL~K~ig-v~qpkriena~iLIANT 237 (527)
T KOG0363|consen 166 ILSQDKEHFAELAVDAVLRLKG------STNL-EAIQIIKKLGGKLEDSFLDEGFLLDKKIG-VNQPKRIENAKILIANT 237 (527)
T ss_pred HHHhhHHHHHHHHHHHHHHhcC------CCCc-cceeeehhcCCccccccccccceeccccC-CCCcccccccceEEecC
Confidence 35678899999999998863 3345 67999999999999999999999999864 36799999999999999
Q ss_pred cccccccc--------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHH
Q 000278 385 ALEYQRVS--------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLER 456 (1731)
Q Consensus 385 ~Le~~r~~--------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~Ler 456 (1731)
+++..+++ +....+..+-..|++.++.+|++|...++|+.+...-|-++..++|..+||+.+....-.-+||
T Consensus 238 ~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiER 317 (527)
T KOG0363|consen 238 PMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIER 317 (527)
T ss_pred CCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHH
Confidence 99998774 4566677777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHH
Q 000278 457 ISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHV 536 (1731)
Q Consensus 457 IAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~ 536 (1731)
++.+||+.|++.+|+....+||+|+.++...+|+ ++++.|+||.-...|||+|||+|.+.|+|.+|+
T Consensus 318 LalvtGGeI~STFd~p~~~klG~C~~IeeimiGe-------------d~li~FSGv~~GeActIVlrGat~q~LDEaeRs 384 (527)
T KOG0363|consen 318 LALVTGGEIVSTFDNPELVKLGECDLIEEIMIGE-------------DKLIKFSGVKLGEACTIVLRGATQQILDEAERS 384 (527)
T ss_pred HhhcccceeeeccCCcchhccccchhhHHHhcCc-------------cceeeecccccccceEEEEecccHHHHHHHHHH
Confidence 9999999999999999999999999998777766 589999999988899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCeEecCCCccCCCC
Q 000278 537 VQYGIFAAYHLAVETSFLADEGASLPEL 564 (1731)
Q Consensus 537 l~dal~a~~~l~lE~~~v~GgGa~~~~~ 564 (1731)
++||+++.-..+.|.+++.|||+.++-+
T Consensus 385 lHDALcVLaqtv~esrvv~GgG~sEm~M 412 (527)
T KOG0363|consen 385 LHDALCVLAQTVKESRVVLGGGCSEMLM 412 (527)
T ss_pred HHHHHHHHHHHhccceeeecCCcHHHHH
Confidence 9999999999999999999999998743
No 34
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-38 Score=353.11 Aligned_cols=304 Identities=18% Similarity=0.252 Sum_probs=274.2
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCC-c----------------h
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDD-E----------------E 307 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d-~----------------~ 307 (1731)
++||||| |+|+|||.||..+.+|++.|+||.-|...|.+|....+..+.+++++.+-. . +
T Consensus 95 eaGDGTT---sVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvS 171 (534)
T KOG0358|consen 95 EAGDGTT---SVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVS 171 (534)
T ss_pred cccCCce---EEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHH
Confidence 8899999 999999999999999999999999999999999999999999988775422 1 4
Q ss_pred hhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEeccccc
Q 000278 308 SWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALE 387 (1731)
Q Consensus 308 ~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~Le 387 (1731)
.+...|++++++|+..|... .+....|+ ..|||.|-.||.++|+++++|+||++......-|++++++||-++.|-|.
T Consensus 172 q~s~llapmAVdAV~kv~dp-~~~~nvdl-kdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS 249 (534)
T KOG0358|consen 172 QYSSLLAPMAVDAVLKVIDP-ENATNVDL-KDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQIS 249 (534)
T ss_pred hhccccchHHHHHHHhccCc-ccccccch-hhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEec
Confidence 66778899999999887532 24456788 77899999999999999999999999988777899999999999999999
Q ss_pred ccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc-----cHHHHHHHHHcCceeeccCChhHHH
Q 000278 388 YQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSV-----SRFAQEYLLAKNVSLVLNTRRPLLE 455 (1731)
Q Consensus 388 ~~r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~V-----s~~Al~~L~~~gI~~v~~Vk~~~Le 455 (1731)
..++. +.+..++.+++.|+.||.+++++|.+.|.||+|++|+| +++|++||.+.+|+|+..+.+.++|
T Consensus 250 ~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRedie 329 (534)
T KOG0358|consen 250 PPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIE 329 (534)
T ss_pred CCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHH
Confidence 88763 67899999999999999999999999999999999986 8899999999999999999999999
Q ss_pred HHHHHhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCC-CCceEEEecCCCHHHHHHHH
Q 000278 456 RISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPK-PLGCTILLRGADGDELKKVK 534 (1731)
Q Consensus 456 rIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~-~~g~TIlLRG~t~~~L~evK 534 (1731)
.|++.+|+..+.++|++++..||+++.++... ..|+ .+++.+.|+.+ ..+|||++||++.-+|+|.+
T Consensus 330 fick~l~c~Pia~id~f~~d~Lg~adlveE~~------~~G~------gkivk~tg~~n~g~tvsil~RGsn~lvleEae 397 (534)
T KOG0358|consen 330 FICKTLGCKPIADIDHFTADKLGSADLVEETD------SSGE------GKIVKITGIQNAGRTVSILLRGSNKLVLEEAE 397 (534)
T ss_pred HHHhhcCCeecchhhhcChhhcCcchhhhhcc------cCCC------ccEEEEEEeecCCCceEEEEecCchhhhHHHh
Confidence 99999999999999999999999999886543 1121 26889999987 68999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 535 HVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 535 r~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
|.++||+|++|-+++...+++|||+.++++.
T Consensus 398 RSlhDALCVirCLvk~r~li~GGGapEieia 428 (534)
T KOG0358|consen 398 RSLHDALCVIRCLVKKRALIAGGGAPEIEIA 428 (534)
T ss_pred hhhhhhhHHHHhhhhccceecCCCCcchHHH
Confidence 9999999999999999999999999998754
No 35
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=357.26 Aligned_cols=300 Identities=19% Similarity=0.268 Sum_probs=280.7
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCC--------------chhhH
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDD--------------EESWL 310 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d--------------~~~w~ 310 (1731)
..||||| ++|+|.+||+++|...+..|+||..|..||..|....|..++..+.+.+.+ .+.-.
T Consensus 86 ~tGDGtt---S~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~~~la 162 (520)
T KOG0359|consen 86 ITGDGTT---SVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVHAELA 162 (520)
T ss_pred ccCCCcc---eEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCcccHHHH
Confidence 7899999 999999999999999999999999999999999999999999776654322 15678
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEecccccccc
Q 000278 311 EIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQR 390 (1731)
Q Consensus 311 ~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~Le~~r 390 (1731)
+.+++++++|+..+.. ..+.+|+ .+|+|.+..-++..|+.+|+|+|++++..|+.||++++|+.||+++.+|||.+
T Consensus 163 ~~lt~~vv~aVl~i~~---~~~~idl-~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK 238 (520)
T KOG0359|consen 163 DVLTPIVVDSVLCIRR---QEEPIDL-FMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEK 238 (520)
T ss_pred hHhHHHHHhhheeecc---CCCCcch-hHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccc
Confidence 8899999999999883 4667999 99999999999999999999999999999999999999999999999999999
Q ss_pred cc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCC----EEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHH
Q 000278 391 VS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPD----VLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISR 459 (1731)
Q Consensus 391 ~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pn----VVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr 459 (1731)
++ +...+-+.+...|++++.+.|.+|+.++.. |||.+|+|++..++.|.+.||.++++-|+..|||+..
T Consensus 239 ~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~l 318 (520)
T KOG0359|consen 239 PEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVL 318 (520)
T ss_pred cccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHH
Confidence 87 457788899999999999999999999876 5888999999999999999999999999999999999
Q ss_pred HhCCeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHHHHH
Q 000278 460 CTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQY 539 (1731)
Q Consensus 460 ~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~l~d 539 (1731)
+||+..+.|+|+|+++.||+|+.+++.++|+ ++|+|+|+|++|..|||+++|++..++..+|.+++|
T Consensus 319 acGG~a~nsvddLtp~~LG~aglVye~tlGE-------------EkfTFIE~~~~p~S~TiLikgpnkht~tQikdaird 385 (520)
T KOG0359|consen 319 ACGGEAVNSVDDLTPDYLGYAGLVYEYTLGE-------------EKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRD 385 (520)
T ss_pred hhccceecccccCChhhccccceeEEeeccc-------------eeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhh
Confidence 9999999999999999999999999999998 489999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEecCCCccCCCC
Q 000278 540 GIFAAYHLAVETSFLADEGASLPEL 564 (1731)
Q Consensus 540 al~a~~~l~lE~~~v~GgGa~~~~~ 564 (1731)
++.+++|.+.++.+++|+||.+.++
T Consensus 386 glrav~ntl~d~~~i~Gaga~~va~ 410 (520)
T KOG0359|consen 386 GLRAVKNTLEDKCGIPGAGAFEVAL 410 (520)
T ss_pred HHHHHHHHhhhcccccCchHHHHHH
Confidence 9999999999999999999998753
No 36
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=353.41 Aligned_cols=303 Identities=19% Similarity=0.227 Sum_probs=274.8
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhc-cCcCCCCC-----------------c
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVEN-LSIGDEDD-----------------E 306 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~-i~~~~~~d-----------------~ 306 (1731)
++||||| +++++|++|++++.+|+..++||..++.||+.|+..++....+ +.++.+.- .
T Consensus 88 evgDgtt---svviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i 164 (545)
T KOG0360|consen 88 EVGDGTT---SVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKII 164 (545)
T ss_pred cccCCce---EEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceec
Confidence 8999999 9999999999999999999999999999999999999987764 44332210 0
Q ss_pred hhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEecccc
Q 000278 307 ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGAL 386 (1731)
Q Consensus 307 ~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~L 386 (1731)
..-.++++.++++|+..++.-..+|...-|-+.|.|-|.+|++..||.++.|+.++..+++..|+.+++|+||++++|.|
T Consensus 165 ~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~L 244 (545)
T KOG0360|consen 165 GMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTL 244 (545)
T ss_pred ccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEeccc
Confidence 35578899999999998876444677777779999999999999999999999999999999999999999999999998
Q ss_pred cccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHH
Q 000278 387 EYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISR 459 (1731)
Q Consensus 387 e~~r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr 459 (1731)
.-.+.. .....++.+.+.|.+..+..+++|++.++||||+.++|++.+++||.++|+++|+++++.+|++||+
T Consensus 245 qk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iak 324 (545)
T KOG0360|consen 245 QKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAK 324 (545)
T ss_pred ccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHH
Confidence 877643 6788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEcccccCC------CCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHH
Q 000278 460 CTGAQIVPSIDHI------SSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKV 533 (1731)
Q Consensus 460 ~TGA~Iissld~L------~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~ev 533 (1731)
+|||++++++.++ .+..+|+|+.|.+.+|++ +.++.+.|.+.. .|.|+|||++...++|+
T Consensus 325 atGat~~sSla~l~geetf~~~~lG~a~evvqeri~d-------------de~ilikg~ka~-~aSiILrgaNd~~~DEm 390 (545)
T KOG0360|consen 325 ATGATLLSSLANLEGEETFEPASLGSADEVVQERIGD-------------DELILIKGTKAT-SASIILRGANDFMLDEM 390 (545)
T ss_pred hhCCeeeehhhccccccccChhhccchhHHHHHhccc-------------ceeEEeccCccc-eeeEEEecCCcccHhhh
Confidence 9999999999865 457899999999999987 579999997766 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCeEecCCCccCCCC
Q 000278 534 KHVVQYGIFAAYHLAVETSFLADEGASLPEL 564 (1731)
Q Consensus 534 Kr~l~dal~a~~~l~lE~~~v~GgGa~~~~~ 564 (1731)
+|.++||+++++..+.++++||||||++..+
T Consensus 391 ers~hdaL~VlkrtLes~~vvpGGG~vE~aL 421 (545)
T KOG0360|consen 391 ERSLHDALCVLKRTLESKSVVPGGGAVETAL 421 (545)
T ss_pred ccchhhHHHHHHHHhccCccccCccHHHHHH
Confidence 9999999999999999999999999999753
No 37
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7e-36 Score=377.43 Aligned_cols=273 Identities=18% Similarity=0.211 Sum_probs=242.8
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCc---------hhhHHHHHH
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDE---------ESWLEIITS 315 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~---------~~w~~~l~~ 315 (1731)
++||||| |+++||++||+++.++++.|+||..|++||+.|+..++..|++++++..+.. ..+.+.|++
T Consensus 83 e~GDGTT---tvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~ 159 (542)
T PRK00013 83 VAGDGTT---TATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGK 159 (542)
T ss_pred ccCCccc---hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHH
Confidence 8999999 9999999999999999999999999999999999999999999888754211 357899999
Q ss_pred HHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCC-------CceeecCCeEEEecccccc
Q 000278 316 LSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRR-------MASKMEKPRLLILGGALEY 388 (1731)
Q Consensus 316 L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~-------M~~~i~NprILll~~~Le~ 388 (1731)
|+++|+..++++ +.|.|++..| ...++++++|++|++++.++. |++.++||+||++++.|
T Consensus 160 lv~~Av~~v~~~----------g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i-- 226 (542)
T PRK00013 160 LIAEAMEKVGKE----------GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKI-- 226 (542)
T ss_pred HHHHHHHHhCcC----------CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCcc--
Confidence 999999999753 3489998876 888999999999999999995 48999999999999854
Q ss_pred cccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcC------ceeeccCC-----hhHHHHH
Q 000278 389 QRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKN------VSLVLNTR-----RPLLERI 457 (1731)
Q Consensus 389 ~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~g------I~~v~~Vk-----~~~LerI 457 (1731)
.++.++. .++++|.+.+++|||++++|++.|+++|..++ |.++++++ +.+|+||
T Consensus 227 ----~~~~~l~-----------~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~i 291 (542)
T PRK00013 227 ----SNIQDLL-----------PVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDI 291 (542)
T ss_pred ----CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHH
Confidence 2334443 45668999999999999999999999999997 88888775 8899999
Q ss_pred HHHhCCeEcc-----cccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCC----------------
Q 000278 458 SRCTGAQIVP-----SIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPL---------------- 516 (1731)
Q Consensus 458 Ar~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~---------------- 516 (1731)
|++|||.+++ ++++++..+||+|+.|++.+ +++++|+||..+.
T Consensus 292 a~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~~~~~~ 355 (542)
T PRK00013 292 AILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK----------------DNTTIVDGAGDKEAIKARVAQIKAQIEET 355 (542)
T ss_pred HHHcCCEEecccccCCcccCCHHHCCeeeEEEEec----------------CEEEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999 79999999999999999864 4789999998765
Q ss_pred -------------------ceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 517 -------------------GCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 517 -------------------g~TIlLRG~t~~~L~evKr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
.|||+|||+|+.+++|+||+++||++++++++.++ |||||||+|+++.
T Consensus 356 ~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s 422 (542)
T PRK00013 356 TSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAA 422 (542)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHH
Confidence 78899999999999999999999999999999997 9999999998654
No 38
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=7.6e-36 Score=378.88 Aligned_cols=272 Identities=17% Similarity=0.175 Sum_probs=239.2
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCc---------hhhHHHHHH
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDE---------ESWLEIITS 315 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~---------~~w~~~l~~ 315 (1731)
++||||| |+|+||++|++++.++++.|+||..|++||++|+..++..|++++++..+.. .++.+.|++
T Consensus 95 evGDGTT---tvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~ 171 (555)
T PTZ00114 95 KAGDGTT---TATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGS 171 (555)
T ss_pred ccCCccc---HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHH
Confidence 8999999 9999999999999999999999999999999999999999999887653211 245788999
Q ss_pred HHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCccee-EEEEEEEEeeecccCC-------CceeecCCeEEEeccccc
Q 000278 316 LSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCES-MVVKGVVCKKNVAHRR-------MASKMEKPRLLILGGALE 387 (1731)
Q Consensus 316 L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS-~lv~GvV~~K~~a~k~-------M~~~i~NprILll~~~Le 387 (1731)
|+++|+..|+++ + .|.++.||++.|+ ++++|++|++++.++. |++.++||+||+++++|+
T Consensus 172 li~eAv~~vg~~----------g--~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~ 239 (555)
T PTZ00114 172 LIADAMDKVGKD----------G--TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKIS 239 (555)
T ss_pred HHHHHHHHhCcC----------C--cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCC
Confidence 999999999753 1 2777889999998 8999999999999986 489999999999999988
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcC------ceeecc-----CChhHHHH
Q 000278 388 YQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKN------VSLVLN-----TRRPLLER 456 (1731)
Q Consensus 388 ~~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~g------I~~v~~-----Vk~~~Ler 456 (1731)
. +.+ +..++++|.+.+++|||++++|++.|+++|..++ |.++++ +++++|+|
T Consensus 240 ~------~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~ 302 (555)
T PTZ00114 240 S------IQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQD 302 (555)
T ss_pred C------HHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHH
Confidence 3 233 3445668999999999999999999999999997 888865 78899999
Q ss_pred HHHHhCCeEcccc------cCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCC-----------------
Q 000278 457 ISRCTGAQIVPSI------DHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCP----------------- 513 (1731)
Q Consensus 457 IAr~TGA~Iissl------d~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~----------------- 513 (1731)
||++|||+++++. ++++...||+|+.|++++ . .+++|+||.
T Consensus 303 la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~--~--------------~~~~~~~~~~~~~i~~r~~~l~~~~~ 366 (555)
T PTZ00114 303 IAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK--D--------------ETVILTGGGDKAEIKERVELLRSQIE 366 (555)
T ss_pred HHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe--c--------------eEEEEeCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999997 778888999999999988 2 345566665
Q ss_pred ------------------CCCceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 514 ------------------KPLGCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 514 ------------------~~~g~TIlLRG~t~~~L~evKr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
.+..|||+|||+|+.+++|+||+++||++++++++.++ |||||||+|+++.
T Consensus 367 ~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s 435 (555)
T PTZ00114 367 RTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRAS 435 (555)
T ss_pred hcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHH
Confidence 56799999999999999999999999999999999987 9999999998653
No 39
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9.8e-36 Score=376.10 Aligned_cols=272 Identities=18% Similarity=0.196 Sum_probs=238.6
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCc---------hhhHHHHHH
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDE---------ESWLEIITS 315 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~---------~~w~~~l~~ 315 (1731)
++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..|++++++..+.. ..+.+.|++
T Consensus 83 e~GDGTT---tvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~ 159 (542)
T PRK12849 83 VAGDGTT---TATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGE 159 (542)
T ss_pred ccCCCcc---HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHH
Confidence 8999999 9999999999999999999999999999999999999999999887653211 367899999
Q ss_pred HHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcce-eEEEEEEEEeeecccCC-------CceeecCCeEEEeccccc
Q 000278 316 LSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCE-SMVVKGVVCKKNVAHRR-------MASKMEKPRLLILGGALE 387 (1731)
Q Consensus 316 L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~d-S~lv~GvV~~K~~a~k~-------M~~~i~NprILll~~~Le 387 (1731)
|+++|+..++++ +.+.|+ .||+..| +++++|++|++++.++. |++.++||+||++++.|.
T Consensus 160 lv~~Av~~v~~~----------g~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~ 227 (542)
T PRK12849 160 LIAEAMEKVGKD----------GVITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKIS 227 (542)
T ss_pred HHHHHHHHhccC----------CcEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcC
Confidence 999999999753 234454 5888886 79999999999999984 589999999999998542
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHc------CceeeccCC-----hhHHHH
Q 000278 388 YQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAK------NVSLVLNTR-----RPLLER 456 (1731)
Q Consensus 388 ~~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~------gI~~v~~Vk-----~~~Ler 456 (1731)
+..++. .++++|.+.+++|||++++|++.|+++|.++ ||.++++++ +.+|+|
T Consensus 228 ------~~~~~~-----------~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ 290 (542)
T PRK12849 228 ------SLQDLL-----------PLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLED 290 (542)
T ss_pred ------CHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHH
Confidence 233333 3567899999999999999999999999999 999999886 556999
Q ss_pred HHHHhCCeEcc-----cccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCC----------------
Q 000278 457 ISRCTGAQIVP-----SIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKP---------------- 515 (1731)
Q Consensus 457 IAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~---------------- 515 (1731)
||++|||.+++ ++++++...||+|+.|++.+ +++++|+||..+
T Consensus 291 ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~g~~~~~~i~~r~~~l~~~~~~ 354 (542)
T PRK12849 291 IAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK----------------DNTTIVDGAGDKEAIEARVAQIRRQIEE 354 (542)
T ss_pred HHHHhCCEEecccccCCcccCCHHHCceeeEEEEee----------------eeEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999 68999989999999999765 468889999875
Q ss_pred -------------------CceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 516 -------------------LGCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 516 -------------------~g~TIlLRG~t~~~L~evKr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
..|||+|||+|+.+++|+||+++||++++++++.++ |||||||+|+++.
T Consensus 355 ~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls 422 (542)
T PRK12849 355 TTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAA 422 (542)
T ss_pred cCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHH
Confidence 489999999999999999999999999999999997 9999999998653
No 40
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.5e-35 Score=372.75 Aligned_cols=273 Identities=18% Similarity=0.207 Sum_probs=241.7
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCc---------hhhHHHHHH
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDE---------ESWLEIITS 315 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~---------~~w~~~l~~ 315 (1731)
++||||| |+++||++|++++..++++|+||..|++||.+|+..++..+++++++..+.. ..+.+.|++
T Consensus 84 e~GDGTT---tvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~ 160 (541)
T PRK12851 84 VAGDGTT---TATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGR 160 (541)
T ss_pred hhCCCcc---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHH
Confidence 8999999 9999999999999999999999999999999999999999999887653221 257899999
Q ss_pred HHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCC-------CceeecCCeEEEecccccc
Q 000278 316 LSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRR-------MASKMEKPRLLILGGALEY 388 (1731)
Q Consensus 316 L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~-------M~~~i~NprILll~~~Le~ 388 (1731)
|+++|+..++++ +.|.|++.. |...++++++|++|++++.++. |+++++||+||+++++++.
T Consensus 161 lv~~Av~~vg~~----------g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~ 229 (541)
T PRK12851 161 LVAEAMEKVGNE----------GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISN 229 (541)
T ss_pred HHHHHHHHhccc----------CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCc
Confidence 999999999753 356777766 6778899999999999999984 9999999999999988541
Q ss_pred cccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCc------eeecc-----CChhHHHHH
Q 000278 389 QRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNV------SLVLN-----TRRPLLERI 457 (1731)
Q Consensus 389 ~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI------~~v~~-----Vk~~~LerI 457 (1731)
+.+ +..++++|.+.+++|||++++|++.|+++|..+|| .+|+. +++.+|+||
T Consensus 230 ------~~~-----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~i 292 (541)
T PRK12851 230 ------LQD-----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDI 292 (541)
T ss_pred ------HHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHH
Confidence 222 45567799999999999999999999999999997 66664 899999999
Q ss_pred HHHhCCeEcc-----cccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCC----------------
Q 000278 458 SRCTGAQIVP-----SIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPL---------------- 516 (1731)
Q Consensus 458 Ar~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~---------------- 516 (1731)
|++|||++++ ++++++..+||+|+.|++++ +++++|+||..+.
T Consensus 293 a~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~~~~~~ 356 (541)
T PRK12851 293 AILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK----------------ENTTIIDGAGSKTEIEGRVAQIRAQIEET 356 (541)
T ss_pred HHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc----------------ceEEEEcCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999 68888888999999999876 3688899987653
Q ss_pred -------------------ceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 517 -------------------GCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 517 -------------------g~TIlLRG~t~~~L~evKr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
.+||+|||+|+.+++|+||+++||++++++++.++ |||||||+|+++.
T Consensus 357 ~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s 423 (541)
T PRK12851 357 TSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAV 423 (541)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHH
Confidence 78999999999999999999999999999999997 9999999998653
No 41
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.1e-35 Score=369.56 Aligned_cols=272 Identities=18% Similarity=0.196 Sum_probs=238.1
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCc---------hhhHHHHHH
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDE---------ESWLEIITS 315 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~---------~~w~~~l~~ 315 (1731)
++||||| |+++||++|++++.++++.|+||..|++||+.|+..++..|++++++..+.. .+..+.+++
T Consensus 81 e~GDGTT---tvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~ 157 (520)
T cd03344 81 VAGDGTT---TATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGE 157 (520)
T ss_pred ccCCCcc---hHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHH
Confidence 8999999 9999999999999999999999999999999999999999999887654211 244788999
Q ss_pred HHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcce-eEEEEEEEEeeecccCCC-------ceeecCCeEEEeccccc
Q 000278 316 LSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCE-SMVVKGVVCKKNVAHRRM-------ASKMEKPRLLILGGALE 387 (1731)
Q Consensus 316 L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~d-S~lv~GvV~~K~~a~k~M-------~~~i~NprILll~~~Le 387 (1731)
|+++|+..++++ +.|.| .+||+..| +++++|++|++++.++.| +++++||+||+++++|.
T Consensus 158 lv~~A~~~v~~~----------~~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~ 225 (520)
T cd03344 158 LIAEAMEKVGKD----------GVITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKIS 225 (520)
T ss_pred HHHHHHHHhccC----------CcEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCC
Confidence 999999998753 24555 46999999 799999999999998864 47899999999999863
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCc------eeeccC-----ChhHHHH
Q 000278 388 YQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNV------SLVLNT-----RRPLLER 456 (1731)
Q Consensus 388 ~~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI------~~v~~V-----k~~~Ler 456 (1731)
. +.++. .++++|.+.+++|||++++|++.|+++|.++|| .+++.+ ++++|+|
T Consensus 226 ~------~~~l~-----------~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~ 288 (520)
T cd03344 226 S------IQELL-----------PILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLED 288 (520)
T ss_pred C------HHHHH-----------HHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHH
Confidence 2 33333 356789999999999999999999999999999 676544 8999999
Q ss_pred HHHHhCCeEcc-----cccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCC----------------
Q 000278 457 ISRCTGAQIVP-----SIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKP---------------- 515 (1731)
Q Consensus 457 IAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~---------------- 515 (1731)
||++|||.+++ ++++++...||+|+.|++++ +++++++||..+
T Consensus 289 la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~~~~~ 352 (520)
T cd03344 289 IAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK----------------DDTTIIGGAGDKAAIKARIAQIRKQIEE 352 (520)
T ss_pred HHHHhCCEEecccccCCcccCCHHHCCcceEEEEee----------------ceEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999 78889888999999999876 368899998764
Q ss_pred -------------------CceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 516 -------------------LGCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 516 -------------------~g~TIlLRG~t~~~L~evKr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
..|||+|||+|+.+++|++|+++||++++++++.++ |||||||+|+++.
T Consensus 353 ~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s 420 (520)
T cd03344 353 TTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRAS 420 (520)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHH
Confidence 599999999999999999999999999999999997 9999999998643
No 42
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-35 Score=342.47 Aligned_cols=298 Identities=18% Similarity=0.218 Sum_probs=272.4
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCC---Cc------------hhh
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED---DE------------ESW 309 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~---d~------------~~w 309 (1731)
++||||+ ++|+||++||++|+++|..|++|.+|+.||..|....+..++++.+.... |. -..
T Consensus 95 ~iGDgtn---fvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ 171 (537)
T KOG0362|consen 95 EIGDGTN---FVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGN 171 (537)
T ss_pred hhCCCce---EeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcch
Confidence 7899999 99999999999999999999999999999999999999999987665222 22 245
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEeccccccc
Q 000278 310 LEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQ 389 (1731)
Q Consensus 310 ~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~Le~~ 389 (1731)
.+++..|+++|+..+.|. ..|++ ++|+|+||.||+..+|+++.|+||++.+. +-+++-+.+||.+++||++..
T Consensus 172 ed~l~~lVa~ac~si~p~----~~Fnv-dnIrVcKi~Gg~l~~S~Vv~GmVfkr~~e--G~v~~ak~arvAvf~cP~d~~ 244 (537)
T KOG0362|consen 172 EDFLTKLVAKACVSILPL----MSFNV-DNIRVCKILGGGLEDSCVVCGMVFKRDPE--GEVKSAKDARVAVFACPFDIA 244 (537)
T ss_pred HHHHHHHHHHHHHhhccc----ccccc-cceEEEEEecCCcccceeeEEEEeccccC--CcccccccceeEEEecCCCcc
Confidence 788999999999999985 23888 89999999999999999999999998876 445888999999999999999
Q ss_pred ccc-------cChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHHHhC
Q 000278 390 RVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTG 462 (1731)
Q Consensus 390 r~~-------~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr~TG 462 (1731)
+++ .+..++.++-+.|...++.+|+.|...|++||++.+.|++.+++||.+.+|++++--++.+|.|++|..|
T Consensus 245 ~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtvG 324 (537)
T KOG0362|consen 245 QTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTVG 324 (537)
T ss_pred cccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHcC
Confidence 886 5688899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEcccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEE-cCCCCCceEEEecCCCHHHHHHHHHHHHHHH
Q 000278 463 AQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFE-GCPKPLGCTILLRGADGDELKKVKHVVQYGI 541 (1731)
Q Consensus 463 A~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fe-gc~~~~g~TIlLRG~t~~~L~evKr~l~dal 541 (1731)
|++++++..+..+.||+|+++.++++|+ .+++.|. +|...+..||+|||++...|+++||+++|++
T Consensus 325 A~~l~rl~~P~~~~lG~~d~V~~~EiG~-------------~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV 391 (537)
T KOG0362|consen 325 ATALPRLFPPAPEELGYCDSVSTQEIGD-------------TLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGV 391 (537)
T ss_pred CccchhccCCCCccccccceeeeeecCC-------------ceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhH
Confidence 9999999999999999999999999876 2455555 5556788999999999999999999999999
Q ss_pred HHHHHHHhcCeEecCCCccCCCCC
Q 000278 542 FAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 542 ~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
++.+.+..++++++|+||+++++.
T Consensus 392 ~tyK~l~~d~rLlpGagatEieLa 415 (537)
T KOG0362|consen 392 NTYKALCSDSRLLPGAGATEIELA 415 (537)
T ss_pred HHhhhhccCCccccCCchhHHHHH
Confidence 999999999999999999999764
No 43
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=4.8e-35 Score=369.63 Aligned_cols=272 Identities=20% Similarity=0.227 Sum_probs=237.9
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCc---------hhhHHHHHH
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDE---------ESWLEIITS 315 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~---------~~w~~~l~~ 315 (1731)
++||||| |+++||++|++++.+++++|+||..|++||++|+..++..+++++++..+.. .++.+.|+.
T Consensus 82 e~GDGTT---tvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~ 158 (524)
T TIGR02348 82 VAGDGTT---TATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGS 158 (524)
T ss_pred eeCCCcc---hHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHH
Confidence 8999999 9999999999999999999999999999999999999999999888754211 366889999
Q ss_pred HHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCc-ceeEEEEEEEEeeecccCCC-------ceeecCCeEEEeccccc
Q 000278 316 LSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRR-CESMVVKGVVCKKNVAHRRM-------ASKMEKPRLLILGGALE 387 (1731)
Q Consensus 316 L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~-~dS~lv~GvV~~K~~a~k~M-------~~~i~NprILll~~~Le 387 (1731)
++++|+..++++ +.|.|+. ||.. .++++++|++|++++.++.| ++.++||+||++++.|+
T Consensus 159 lv~~A~~~v~~~----------~~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~ 226 (524)
T TIGR02348 159 LIAEAMEKVGKD----------GVITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKIS 226 (524)
T ss_pred HHHHHHHHhCcC----------CcEeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcC
Confidence 999999999763 2355554 6666 67999999999999999865 89999999999998543
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHc------CceeeccCC-----hhHHHH
Q 000278 388 YQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAK------NVSLVLNTR-----RPLLER 456 (1731)
Q Consensus 388 ~~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~------gI~~v~~Vk-----~~~Ler 456 (1731)
++.+ +..++++|.+.+++|||++++|++.|+++|..+ ||.++++++ +.+|+|
T Consensus 227 ------~~~~-----------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ 289 (524)
T TIGR02348 227 ------NIKD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLED 289 (524)
T ss_pred ------CHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHH
Confidence 2233 355577899999999999999999999999997 888997774 489999
Q ss_pred HHHHhCCeEcc-----cccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCC---------------
Q 000278 457 ISRCTGAQIVP-----SIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPL--------------- 516 (1731)
Q Consensus 457 IAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~--------------- 516 (1731)
||++|||++++ ++++++..+||+|+.|++.+ +++++++||..+.
T Consensus 290 ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~~~~ri~~l~~~~~~ 353 (524)
T TIGR02348 290 IAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK----------------DNTTIVEGAGDKAAIKARVAQIKAQIEE 353 (524)
T ss_pred HHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee----------------cEEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999 89999999999999999875 3688899887654
Q ss_pred --------------------ceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 517 --------------------GCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 517 --------------------g~TIlLRG~t~~~L~evKr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
.+||+|||+|+.+++|+||+++||++++++++.++ |||||||+|+++.
T Consensus 354 ~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s 421 (524)
T TIGR02348 354 TTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAA 421 (524)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHH
Confidence 58899999999999999999999999999999997 9999999998653
No 44
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.1e-34 Score=367.96 Aligned_cols=272 Identities=16% Similarity=0.180 Sum_probs=237.7
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCc---------hhhHHHHHH
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDE---------ESWLEIITS 315 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~---------~~w~~~l~~ 315 (1731)
++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..|++++++..++. ....+.|++
T Consensus 84 e~GDGTT---tvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~ 160 (545)
T PRK12852 84 LAGDGTT---TATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGK 160 (545)
T ss_pred eecCCcc---hHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHH
Confidence 8999999 9999999999999999999999999999999999999999999887654321 133678999
Q ss_pred HHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCc-ceeEEEEEEEEeeecccCC-------CceeecCCeEEEeccccc
Q 000278 316 LSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRR-CESMVVKGVVCKKNVAHRR-------MASKMEKPRLLILGGALE 387 (1731)
Q Consensus 316 L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~-~dS~lv~GvV~~K~~a~k~-------M~~~i~NprILll~~~Le 387 (1731)
|+++|+..|+++ +.|.|+. ||.. .++++++|++|++++.++. |+..++||+||++++.|.
T Consensus 161 li~eA~~~vg~~----------g~i~v~~--g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~ 228 (545)
T PRK12852 161 MIAQAMQKVGNE----------GVITVEE--NKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLS 228 (545)
T ss_pred HHHHHHHHhccC----------Cceeeec--CCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccC
Confidence 999999999863 3455554 7775 7999999999999999984 999999999999986432
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHc------CceeeccCC-----hhHHHH
Q 000278 388 YQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAK------NVSLVLNTR-----RPLLER 456 (1731)
Q Consensus 388 ~~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~------gI~~v~~Vk-----~~~Ler 456 (1731)
.+. ++..+++.|.+.+++|||++++|++.|+++|..+ +|.+|++.+ +.+|+|
T Consensus 229 ------~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ 291 (545)
T PRK12852 229 ------GLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLED 291 (545)
T ss_pred ------CHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHH
Confidence 222 4455677999999999999999999999999986 799998554 999999
Q ss_pred HHHHhCCeEcc-----cccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCC----------------
Q 000278 457 ISRCTGAQIVP-----SIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKP---------------- 515 (1731)
Q Consensus 457 IAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~---------------- 515 (1731)
||++|||++++ ++++++..+||+|+.|++++ +++++|+||..+
T Consensus 292 ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~~~~~ 355 (545)
T PRK12852 292 IAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK----------------ENTTIVNGAGKKADIEARVGQIKAQIEE 355 (545)
T ss_pred HHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc----------------cEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999 78999989999999999887 357888888753
Q ss_pred -------------------CceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 516 -------------------LGCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 516 -------------------~g~TIlLRG~t~~~L~evKr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
..|||+|||+|+.+++|+||+++||++++++++.++ |||||||+|+++.
T Consensus 356 ~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s 423 (545)
T PRK12852 356 TTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAK 423 (545)
T ss_pred cccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHH
Confidence 678999999999999999999999999999999997 9999999998653
No 45
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.3e-34 Score=366.43 Aligned_cols=273 Identities=16% Similarity=0.185 Sum_probs=236.0
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCc---------hhhHHHHHH
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDE---------ESWLEIITS 315 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~---------~~w~~~l~~ 315 (1731)
++||||| |+++||++|++++.+++++|+||..|++||++|+..++..|++++.+..+.. .+..+.|++
T Consensus 84 e~GDGTT---t~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~ 160 (544)
T PRK12850 84 LAGDGTT---TATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGE 160 (544)
T ss_pred hhcCCcc---hHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHH
Confidence 8999999 9999999999999999999999999999999999999999999887653211 245788999
Q ss_pred HHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCC-------ceeecCCeEEEecccccc
Q 000278 316 LSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRM-------ASKMEKPRLLILGGALEY 388 (1731)
Q Consensus 316 L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M-------~~~i~NprILll~~~Le~ 388 (1731)
|+++|+..|+++ +.+|+ +..+..| .++++++|++|++++.++.| ++.++||+||++++.|.
T Consensus 161 lv~eAv~~vg~~----g~i~v----~~~~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~- 228 (544)
T PRK12850 161 MIAEAMDKVGKE----GVITV----EEAKTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKIS- 228 (544)
T ss_pred HHHHHHHHhccc----Cceee----EEccccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccC-
Confidence 999999999753 23333 1112333 68899999999999999865 89999999999998542
Q ss_pred cccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCc------eeecc-----CChhHHHHH
Q 000278 389 QRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNV------SLVLN-----TRRPLLERI 457 (1731)
Q Consensus 389 ~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI------~~v~~-----Vk~~~LerI 457 (1731)
++.+ +..++++|.+.+++|||++++|++.|+++|..+|| .+|++ +++.+|+||
T Consensus 229 -----~~~~-----------i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~i 292 (544)
T PRK12850 229 -----NLQD-----------LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDI 292 (544)
T ss_pred -----CHHH-----------HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHH
Confidence 2222 55667799999999999999999999999999999 88776 899999999
Q ss_pred HHHhCCeEcc-----cccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCC----------------
Q 000278 458 SRCTGAQIVP-----SIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPL---------------- 516 (1731)
Q Consensus 458 Ar~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~---------------- 516 (1731)
|++|||++++ ++++++...||+|+.|++.+ +++++|+||..+.
T Consensus 293 a~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~g~~~~~~i~~ri~~l~~~~~~~ 356 (544)
T PRK12850 293 AVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK----------------ENTTIIDGAGDKKNIEARVKQIRAQIEET 356 (544)
T ss_pred HHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe----------------eeEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999 78899888999999998776 3688899987753
Q ss_pred -------------------ceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 517 -------------------GCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 517 -------------------g~TIlLRG~t~~~L~evKr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
.|||+|||+|+.+++|+||+++||++++++++.++ |||||||+|+++.
T Consensus 357 ~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s 423 (544)
T PRK12850 357 TSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAR 423 (544)
T ss_pred ccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHH
Confidence 79999999999999999999999999999999996 9999999998653
No 46
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=367.96 Aligned_cols=286 Identities=16% Similarity=0.178 Sum_probs=239.1
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCc--------hhhHHHHHHH
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDE--------ESWLEIITSL 316 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~--------~~w~~~l~~L 316 (1731)
++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..|++++.+..+.. .++.+.|++|
T Consensus 139 evGDGTT---TvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~~~i~~l 215 (600)
T PLN03167 139 LAGDGTT---TSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNM 215 (600)
T ss_pred hhCCCcc---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCcHHHHHH
Confidence 8999999 9999999999999999999999999999999999999999998877653211 2567789999
Q ss_pred HHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCccee-EEEEEEEEeeecccC-------CCceeecCCeEEEecccccc
Q 000278 317 SWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCES-MVVKGVVCKKNVAHR-------RMASKMEKPRLLILGGALEY 388 (1731)
Q Consensus 317 ~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS-~lv~GvV~~K~~a~k-------~M~~~i~NprILll~~~Le~ 388 (1731)
+++|+..|+++ +.|.++ .||+..|+ ++++|++|++++.|+ +|+++++||+|||+++.
T Consensus 216 iaeAv~~Vg~~----------g~i~v~--~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~--- 280 (600)
T PLN03167 216 IAEAMSKVGRK----------GVVTLE--EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKK--- 280 (600)
T ss_pred HHHHHHHhccC----------CcEEec--cCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccc---
Confidence 99999999853 233333 59999997 899999999999999 89999999999999964
Q ss_pred cccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHH------HcCceeeccCC-----hhHHHHH
Q 000278 389 QRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLL------AKNVSLVLNTR-----RPLLERI 457 (1731)
Q Consensus 389 ~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~------~~gI~~v~~Vk-----~~~LerI 457 (1731)
.....++.++++ +|...+++|||++++|++.|+++|. ..+|.+++..+ +++|+||
T Consensus 281 ---i~~~~~l~~~le-----------~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~di 346 (600)
T PLN03167 281 ---ITNARDLIGILE-----------DAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDI 346 (600)
T ss_pred ---cCCHHHHHHHHH-----------HHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHH
Confidence 344455655543 7788999999999999999999999 78899999884 8899999
Q ss_pred HHHhCCeEcc-----cccCCCCCCceeeeEEEEEEEeccccccCCCCcc--cceEEEEEEcCC------------C----
Q 000278 458 SRCTGAQIVP-----SIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKK--LVKTLMFFEGCP------------K---- 514 (1731)
Q Consensus 458 Ar~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~--~~kt~~~fegc~------------~---- 514 (1731)
|++|||++++ ++++++...||+|+.|++++.. +.+.|+.|.+ ..+++.+|++|. +
T Consensus 347 a~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~--t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~ 424 (600)
T PLN03167 347 AILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDT--TTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIA 424 (600)
T ss_pred HHhhCCEEecccccCCcccCCHHHCceeeEEEEeccc--ceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHh
Confidence 9999999999 7888988999999999998721 2222211111 135677777764 1
Q ss_pred --CCceEEE-ecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 515 --PLGCTIL-LRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 515 --~~g~TIl-LRG~t~~~L~evKr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
+.++||+ |||+|+.+|+|+||+++||++++++++.++ +|||||++|+++.
T Consensus 425 ~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls 477 (600)
T PLN03167 425 KLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLA 477 (600)
T ss_pred hcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHH
Confidence 1257776 999999999999999999999999999999 9999999998653
No 47
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=7.2e-34 Score=359.50 Aligned_cols=272 Identities=17% Similarity=0.168 Sum_probs=235.6
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCc---------hhhHHHHHH
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDE---------ESWLEIITS 315 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~---------~~w~~~l~~ 315 (1731)
++||||| |+|+||++|++++.++++.|+||..|++||.+|+..++..|.+++++...+. .+.++.|++
T Consensus 84 e~GDGTT---TvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~ 160 (546)
T PRK14104 84 AAGDGTT---TATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGK 160 (546)
T ss_pred cccCccc---HHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHH
Confidence 8999999 9999999999999999999999999999999999999999999887753321 245677999
Q ss_pred HHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCc-ceeEEEEEEEEeeecccCCC-------ceeecCCeEEEeccccc
Q 000278 316 LSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRR-CESMVVKGVVCKKNVAHRRM-------ASKMEKPRLLILGGALE 387 (1731)
Q Consensus 316 L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~-~dS~lv~GvV~~K~~a~k~M-------~~~i~NprILll~~~Le 387 (1731)
|+++|+..|+++ +.|.|..+ +.. .++++++|++|++++.|+.| +.+++||+||+++
T Consensus 161 lv~~Av~~vg~~----------g~i~v~~~--~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d---- 224 (546)
T PRK14104 161 FLADAMKKVGNE----------GVITVEEA--KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINE---- 224 (546)
T ss_pred HHHHHHHHhccC----------CceeeEec--ccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEeh----
Confidence 999999999863 35677764 455 58999999999999999855 7889999999998
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHH------cCceeeccCC-----hhHHHH
Q 000278 388 YQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLA------KNVSLVLNTR-----RPLLER 456 (1731)
Q Consensus 388 ~~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~------~gI~~v~~Vk-----~~~Ler 456 (1731)
....++.+ |..+++.|.+.+++|||++++|++.|+++|.. .+|.+|++++ +.+|+|
T Consensus 225 --~~i~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ 291 (546)
T PRK14104 225 --KKLSSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQD 291 (546)
T ss_pred --hhhcCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHH
Confidence 22333333 44567799999999999999999999999985 5788886665 899999
Q ss_pred HHHHhCCeEccc-----ccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCC----------------
Q 000278 457 ISRCTGAQIVPS-----IDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKP---------------- 515 (1731)
Q Consensus 457 IAr~TGA~Iiss-----ld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~---------------- 515 (1731)
||++|||+++++ +++++..+||+|+.|++.. +++++++||..+
T Consensus 292 ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~----------------~~~~~i~g~~~~~~i~~ri~~l~~~~~~ 355 (546)
T PRK14104 292 IAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDK----------------ENTTIVNGAGKKADIEARVAQIKAQIEE 355 (546)
T ss_pred HHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcC----------------CEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999 8999989999999988622 468889999875
Q ss_pred -------------------CceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 516 -------------------LGCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 516 -------------------~g~TIlLRG~t~~~L~evKr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
..+||+|||+|+.+++|+||+++||++++++++.++ |||||||+++++.
T Consensus 356 ~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s 423 (546)
T PRK14104 356 TTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRAS 423 (546)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHH
Confidence 789999999999999999999999999999999998 9999999998653
No 48
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=7.7e-34 Score=359.11 Aligned_cols=274 Identities=18% Similarity=0.190 Sum_probs=232.1
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCc---------hhhHHHHHH
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDE---------ESWLEIITS 315 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~---------~~w~~~l~~ 315 (1731)
++||||| |+++||++|++++..++++|+||..|++||++|+..++..+++++.+..+.. .++.+.|++
T Consensus 83 e~GDGTT---tvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~ 159 (529)
T CHL00093 83 VAGDGTT---TATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGS 159 (529)
T ss_pred eecCCCC---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHH
Confidence 7899999 9999999999999999999999999999999999999999999887754221 367899999
Q ss_pred HHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCC-------ceeecCCeEEEecccccc
Q 000278 316 LSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRM-------ASKMEKPRLLILGGALEY 388 (1731)
Q Consensus 316 L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M-------~~~i~NprILll~~~Le~ 388 (1731)
|+++|+..|+++ +.|.++. .+|...++++++|++|++++.++.| +..++||+||+++++|++
T Consensus 160 lv~eAv~~vg~~----------g~i~~~~-g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~ 228 (529)
T CHL00093 160 MIADAIEKVGRE----------GVISLEE-GKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITL 228 (529)
T ss_pred HHHHHHHHhccC----------CceeecC-CCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCc
Confidence 999999999853 2333322 2345667899999999999998854 346999999999999997
Q ss_pred cccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHH--HH----cCceeeccC-----ChhHHHHH
Q 000278 389 QRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYL--LA----KNVSLVLNT-----RRPLLERI 457 (1731)
Q Consensus 389 ~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L--~~----~gI~~v~~V-----k~~~LerI 457 (1731)
.+. .+..++++|.+.+++|||++++|++.|+.+| .+ +||.+++++ ++.+|+||
T Consensus 229 ~~~----------------~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~i 292 (529)
T CHL00093 229 VQQ----------------DLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDI 292 (529)
T ss_pred hHH----------------HHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHH
Confidence 531 2555667999999999999999999777766 66 489999988 55889999
Q ss_pred HHHhCCeEcc-----cccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEc---------CCCC--------
Q 000278 458 SRCTGAQIVP-----SIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEG---------CPKP-------- 515 (1731)
Q Consensus 458 Ar~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~feg---------c~~~-------- 515 (1731)
|++|||++++ +++++++.+||+|+.|++++ +++++|++ |...
T Consensus 293 a~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 356 (529)
T CHL00093 293 AILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK----------------DSTTIIADGNEEQVKARCEQLRKQIEIAD 356 (529)
T ss_pred HHhhCCEEecccccCCcCCCCHHHCCcceEEEEec----------------CEEEEEecCcHHHHHHHHHHHHHHhhhcC
Confidence 9999999999 79999989999999999875 25677764 3221
Q ss_pred -----------------CceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEecCCCccCCCCC
Q 000278 516 -----------------LGCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 516 -----------------~g~TIlLRG~t~~~L~evKr~l~dal~a~~~l~lE~~~v~GgGa~~~~~~ 565 (1731)
..+||+|||+|+.+++|.||+++||++++++++.++ +||||||+|+++.
T Consensus 357 ~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s 422 (529)
T CHL00093 357 SSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLS 422 (529)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHH
Confidence 377899999999999999999999999999999997 9999999998653
No 49
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=5.5e-33 Score=313.13 Aligned_cols=193 Identities=35% Similarity=0.510 Sum_probs=183.7
Q ss_pred hhhHHHHHHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEecccc
Q 000278 307 ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGAL 386 (1731)
Q Consensus 307 ~~w~~~l~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~L 386 (1731)
..|.+.|++|+++|+..++++. + ++..++|+|++++||++.||++++|++|+|+++|+.|+++++||||||++++|
T Consensus 17 ~~~~~~l~~l~~~Av~~v~~~~--~--~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~~n~~Ill~~~~l 92 (209)
T cd03333 17 SSWDDFLGKLVVDAVLKVGPDN--R--MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRLENAKILLLDCPL 92 (209)
T ss_pred hhHHHHHHHHHHHHHHHhhccC--C--CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeEcCCCcEEEEeCCe
Confidence 5799999999999999998742 2 55559999999999999999999999999999999999999999999999999
Q ss_pred cccccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHHHhCCeEc
Q 000278 387 EYQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIV 466 (1731)
Q Consensus 387 e~~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr~TGA~Ii 466 (1731)
|| |||++++|++.|+++|.++||++++++++.+|+|||++|||+++
T Consensus 93 e~----------------------------------vii~~~~I~~~al~~l~~~~I~~v~~~~~~~l~~ia~~tga~ii 138 (209)
T cd03333 93 EY----------------------------------VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIV 138 (209)
T ss_pred eE----------------------------------EEEecCcccHHHHHHHHHCCCEEEEeCCHHHHHHHHHHHCCEEe
Confidence 99 99999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCceeeeEEEEEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 000278 467 PSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQYGIFAAYH 546 (1731)
Q Consensus 467 ssld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~l~dal~a~~~ 546 (1731)
+++++++.+.||+|+.|+++++++ +++++|+||..+.+|||+|||+|..+|+|+||+++||++|+++
T Consensus 139 ~~~~~~~~~~lG~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~ 205 (209)
T cd03333 139 SSLEDLTPEDLGTAELVEETKIGE-------------EKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALCAVRA 205 (209)
T ss_pred cccccCChhhceeeeEEEEEEECC-------------eEEEEEEcCCCCCEEEEEEECCCHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999765 6899999999899999999999999999999999999999999
Q ss_pred HHhc
Q 000278 547 LAVE 550 (1731)
Q Consensus 547 l~lE 550 (1731)
++++
T Consensus 206 ~~~~ 209 (209)
T cd03333 206 AVEE 209 (209)
T ss_pred HhhC
Confidence 9864
No 50
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.2e-27 Score=262.13 Aligned_cols=200 Identities=18% Similarity=0.242 Sum_probs=187.2
Q ss_pred ccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCchhhHHHHHHHHHHHHHhc
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDEESWLEIITSLSWEAATLL 324 (1731)
Q Consensus 245 evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~~~w~~~l~~L~~~A~~~V 324 (1731)
++||||| .+++||+.++.++..++..|+||..+.+||..+...++..+.+++-+.+
T Consensus 88 eIgdGtT---gVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e--------------------- 143 (400)
T KOG0357|consen 88 EIGDGTT---GVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE--------------------- 143 (400)
T ss_pred hhccCCc---ccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc---------------------
Confidence 8999999 9999999999999999999999999999999999998888887752110
Q ss_pred CcCCCCCCCCCCCCcEEEEEecCCCcceeEEEEEEEEeeecccCCCceeecCCeEEEecccccccccccChhHHHHHHHH
Q 000278 325 KPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEYQRVSNLLSSFDTLLQQ 404 (1731)
Q Consensus 325 ~~d~~~~~~~Di~~~VkIkkI~GG~~~dS~lv~GvV~~K~~a~k~M~~~i~NprILll~~~Le~~r~~~~~~sl~~il~q 404 (1731)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHHHhCCeEcccccCCCCCCceeeeEEE
Q 000278 405 EMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIVPSIDHISSPKLGYCEKFH 484 (1731)
Q Consensus 405 E~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~ 484 (1731)
+..+++.|+..|+++++|+++.++.|-++|.+++..+|++|.-.+||-||.+||+.|++++.+|++.+||+|+.|+
T Consensus 144 ----f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVr 219 (400)
T KOG0357|consen 144 ----FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVR 219 (400)
T ss_pred ----HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEE
Confidence 3445668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccCCCCcccceEEEEEEcCCCCCceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEecCCCccCCC
Q 000278 485 VERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPE 563 (1731)
Q Consensus 485 v~~~~~e~~~~~~~~~~~~kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~l~dal~a~~~l~lE~~~v~GgGa~~~~ 563 (1731)
...|+.. .++++++|.|++++..||.+||++..+++|.||+++||+||+||++++.++|.|||++++.
T Consensus 220 E~sfgtt-----------kdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEis 287 (400)
T KOG0357|consen 220 EISFGTT-----------KDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIS 287 (400)
T ss_pred EEecccc-----------cceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhh
Confidence 9999873 3789999999999999999999999999999999999999999999999999999999974
No 51
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8.7e-22 Score=235.43 Aligned_cols=282 Identities=17% Similarity=0.157 Sum_probs=233.7
Q ss_pred CCccCCcccccceeehehHHHHHhHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCcCCCCCc---------hhhHHHH
Q 000278 243 GDATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDE---------ESWLEII 313 (1731)
Q Consensus 243 ~~evGDGTT~~~s~viLA~ell~~~~~li~~g~~~~~i~~g~~~al~~~Ll~l~~i~~~~~~d~---------~~w~~~l 313 (1731)
|+.+||||| ++++||.++..++...+.+|.+|.++.+|...++......|.+.+.+..... .+.+..+
T Consensus 95 N~~agdGtt---tatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~i 171 (550)
T KOG0356|consen 95 NEEAGDGTT---TATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEI 171 (550)
T ss_pred cCccccCcc---hHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHHH
Confidence 448999999 9999999999999999999999999999999999999999999888765432 4667788
Q ss_pred HHHHHHHHHhcCcCCCCCCCCCCCCcEEEEEecCCCccee-EEEEEEEEeeecccC-------CCceeecCCeEEEeccc
Q 000278 314 TSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCES-MVVKGVVCKKNVAHR-------RMASKMEKPRLLILGGA 385 (1731)
Q Consensus 314 ~~L~~~A~~~V~~d~~~~~~~Di~~~VkIkkI~GG~~~dS-~lv~GvV~~K~~a~k-------~M~~~i~NprILll~~~ 385 (1731)
.+++.+|+..|+++ +.|.|+. |.+..|. ++++|+-|++++.++ .+..+++||++||..
T Consensus 172 g~li~~a~~kvG~~----------GVItv~~--gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~-- 237 (550)
T KOG0356|consen 172 GNLISDAMKKVGRK----------GVITVKD--GKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSE-- 237 (550)
T ss_pred HHHHHHHHHHhCcC----------CeEEeec--CCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhh--
Confidence 88999999999975 6677777 7777765 899999999999986 456678999999988
Q ss_pred ccccccccChhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceee-----------ccCChhHH
Q 000278 386 LEYQRVSNLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLV-----------LNTRRPLL 454 (1731)
Q Consensus 386 Le~~r~~~~~~sl~~il~qE~e~L~~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v-----------~~Vk~~~L 454 (1731)
+.++++.++-+.++ ...+...++|++.++|+..||..|.-++..+. .+-++..|
T Consensus 238 ----kki~~v~~ivp~LE-----------~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l 302 (550)
T KOG0356|consen 238 ----KKISSVQSIVPALE-----------LALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLL 302 (550)
T ss_pred ----hhhhHHHHHhHHHH-----------HhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhh
Confidence 66777888877777 66777889999999999999999988775544 44478899
Q ss_pred HHHHHHhCCeEcc------cccCCCCCCceeeeEEEEEEEeccccccCCCCccc-------------------------c
Q 000278 455 ERISRCTGAQIVP------SIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKL-------------------------V 503 (1731)
Q Consensus 455 erIAr~TGA~Iis------sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~-------------------------~ 503 (1731)
.+||.+|||.++. +++.....+||+|+.+.+.+ +++.+....+++. .
T Consensus 303 ~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtk--d~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~ 380 (550)
T KOG0356|consen 303 KDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTK--DDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLN 380 (550)
T ss_pred hHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEec--CcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHH
Confidence 9999999999886 45566778999999999988 3233333222221 2
Q ss_pred eEEEEEEcCCCCCceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEecCCCccCCC
Q 000278 504 KTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPE 563 (1731)
Q Consensus 504 kt~~~fegc~~~~g~TIlLRG~t~~~L~evKr~l~dal~a~~~l~lE~~~v~GgGa~~~~ 563 (1731)
+++..|.| ..++|.++|.++.|+++.|.+++||++|+++++.|| +|||||+++..
T Consensus 381 er~a~ls~----gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~ 435 (550)
T KOG0356|consen 381 ERLAKLSG----GVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLR 435 (550)
T ss_pred HHHHHhcC----CeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHH
Confidence 33333444 578899999999999999999999999999999999 99999999864
No 52
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.55 E-value=1.3e-15 Score=141.81 Aligned_cols=68 Identities=43% Similarity=1.041 Sum_probs=47.1
Q ss_pred CCCccCCCccccccccccCCCCcccccccccCceEeCCCCCCcccCCCCCCcccccCCcccccchhhHHHHh
Q 000278 31 DFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFKQWQ 102 (1731)
Q Consensus 31 ~~W~pd~~~~~C~~C~~~Fsl~~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~~l~ 102 (1731)
|.|+||+++..|+.|+++|++++||||||.||.+||+.|+.+++.++... ....+++|||+.|+..++
T Consensus 1 ~~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~----~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 1 PHWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPS----SGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp --SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--G----GTESEEEEE-HHHHHHHH
T ss_pred CCcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccc----cCCCCcCEECHHHHHHhc
Confidence 57999999999999999999999999999999999999999998877211 123579999999999875
No 53
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=99.36 E-value=1.6e-13 Score=158.99 Aligned_cols=73 Identities=37% Similarity=0.928 Sum_probs=66.0
Q ss_pred CCCCCCCCCCccCCCccccccccc-cCCCCcccccccccCceEeCCCCCCcccCCCCCCcccccCCcccccchhhHHHHh
Q 000278 24 EPSHLSRDFWMPDQSCRVCYECDS-QFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFKQWQ 102 (1731)
Q Consensus 24 ~~~~~~r~~W~pd~~~~~C~~C~~-~Fsl~~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~~l~ 102 (1731)
.|.+...+.|+||+++..|+.|+. .|+++.||||||+||.|||..|+.++..++... ..++|||+.||..+.
T Consensus 153 ~~~~~~~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~-------~k~~rvC~~CF~el~ 225 (288)
T KOG1729|consen 153 SPSNNSAAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLS-------TKPIRVCDICFEELE 225 (288)
T ss_pred CCCCCcCCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccC-------CCCceecHHHHHHHh
Confidence 356778899999999999999999 999999999999999999999999987777654 468999999999997
Q ss_pred c
Q 000278 103 L 103 (1731)
Q Consensus 103 ~ 103 (1731)
.
T Consensus 226 ~ 226 (288)
T KOG1729|consen 226 K 226 (288)
T ss_pred c
Confidence 6
No 55
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.36 E-value=3.5e-13 Score=163.51 Aligned_cols=75 Identities=27% Similarity=0.648 Sum_probs=59.0
Q ss_pred CCCCCCccCCCc-cccccccccCCCC-----cccccccccCceEeCCCCCCcccCCCCCCccc--ccCCcccccchhhHH
Q 000278 28 LSRDFWMPDQSC-RVCYECDSQFTVF-----NRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTA--QEQWEKLRVCNYCFK 99 (1731)
Q Consensus 28 ~~r~~W~pd~~~-~~C~~C~~~Fsl~-----~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~--~~~~~~vRVC~~C~~ 99 (1731)
+..|.|++|+++ ..|+.|++.|+.+ .||||||+||++||+.|++++..++.....++ .++..+.|||+.||+
T Consensus 448 LhAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYd 527 (1374)
T PTZ00303 448 LHNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYK 527 (1374)
T ss_pred ccCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHH
Confidence 567899999985 7899999999754 69999999999999999999875544322222 233468899999997
Q ss_pred HHh
Q 000278 100 QWQ 102 (1731)
Q Consensus 100 ~l~ 102 (1731)
+++
T Consensus 528 q~E 530 (1374)
T PTZ00303 528 EYE 530 (1374)
T ss_pred HHH
Confidence 764
No 56
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=99.31 E-value=4.1e-13 Score=156.41 Aligned_cols=70 Identities=40% Similarity=0.991 Sum_probs=62.9
Q ss_pred CCCCCCCCCccCCCccccccccccCCCCcccccccccCceEeCCCCCCcccCCCCCCcccccCCcccccch-----hhHH
Q 000278 25 PSHLSRDFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCN-----YCFK 99 (1731)
Q Consensus 25 ~~~~~r~~W~pd~~~~~C~~C~~~Fsl~~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~-----~C~~ 99 (1731)
.+.++.|-|+||..+..|+.|+.+|+.|+||||||+||+|||++|+-..+++|..+.. +..|||. .||.
T Consensus 887 satlsppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~gl~------ka~rvcrpqsnldc~~ 960 (990)
T KOG1819|consen 887 SATLSPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGLD------KAPRVCRPQSNLDCLT 960 (990)
T ss_pred ccccCCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccccc------cCceecCCccccccee
Confidence 4568889999999999999999999999999999999999999999999999988854 4789998 6664
Q ss_pred H
Q 000278 100 Q 100 (1731)
Q Consensus 100 ~ 100 (1731)
.
T Consensus 961 r 961 (990)
T KOG1819|consen 961 R 961 (990)
T ss_pred e
Confidence 3
No 57
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=5.6e-12 Score=156.52 Aligned_cols=68 Identities=37% Similarity=0.904 Sum_probs=60.0
Q ss_pred CCCCccCCCccccccccccCCCCcccccccccCceEeCCCCCCcccCCCCCCcccccCCcccccchhhHHHHhcccc
Q 000278 30 RDFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFKQWQLGVA 106 (1731)
Q Consensus 30 r~~W~pd~~~~~C~~C~~~Fsl~~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~~l~~~~~ 106 (1731)
.+-|.... .|+.|.++|++++|+||||+||+|||..|+++..++|..|. .++||||+.||+.+.....
T Consensus 159 ~pdW~D~~---~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi------~~~VRVCd~C~E~l~~~s~ 226 (634)
T KOG1818|consen 159 APDWIDSE---ECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGI------EKPVRVCDSCYELLTRASV 226 (634)
T ss_pred Cccccccc---ccceeeeeeeeccccccccccchhhccCccccccCcccccc------cccceehhhhHHHhhhccc
Confidence 46698766 49999999999999999999999999999999999999883 3689999999999976544
No 58
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=99.00 E-value=1.3e-10 Score=104.22 Aligned_cols=55 Identities=47% Similarity=1.134 Sum_probs=48.6
Q ss_pred ccccccccccCCCCcccccccccCceEeCCCCCCcccCCCCCCcccccCCcccccchhhHH
Q 000278 39 CRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFK 99 (1731)
Q Consensus 39 ~~~C~~C~~~Fsl~~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~ 99 (1731)
+..|+.|++.|+++.||||||.||++||..|+.+.+.++... ...++|||..||.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~------~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMG------GGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCccc------CCCccEeChHHhC
Confidence 467999999999999999999999999999999998877532 2479999999985
No 59
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=98.93 E-value=1.3e-10 Score=136.68 Aligned_cols=73 Identities=34% Similarity=0.785 Sum_probs=54.9
Q ss_pred CCccCCCccccccccccCCCCcccccccccCceEeCCCCCCcc-----cC-CCC------CCcc----cccCCcccccch
Q 000278 32 FWMPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSI-----PA-PSV------DPKT----AQEQWEKLRVCN 95 (1731)
Q Consensus 32 ~W~pd~~~~~C~~C~~~Fsl~~RrHHCR~CG~ifC~~Cs~~~v-----~l-~~~------~~~~----~~~~~~~vRVC~ 95 (1731)
.|++|.++.-|+.|..+|++.+||||||.||+|+|..|+.+-. .+ ... .+.. -.....+.|+|.
T Consensus 173 pW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC~ 252 (505)
T KOG1842|consen 173 PWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLCM 252 (505)
T ss_pred cccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHHH
Confidence 5999999999999999999999999999999999999986521 00 000 0000 012235799999
Q ss_pred hhHHHHhcc
Q 000278 96 YCFKQWQLG 104 (1731)
Q Consensus 96 ~C~~~l~~~ 104 (1731)
.|...|-.+
T Consensus 253 hCl~~L~~R 261 (505)
T KOG1842|consen 253 HCLDNLFRR 261 (505)
T ss_pred HHHHHHHHH
Confidence 999988554
No 60
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=98.72 E-value=3.7e-09 Score=135.28 Aligned_cols=54 Identities=35% Similarity=0.863 Sum_probs=48.9
Q ss_pred CCCCCCCCccCCCccccccccccCCCCcccccccccCceEeCCCCCCcccCCCC
Q 000278 26 SHLSRDFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSV 79 (1731)
Q Consensus 26 ~~~~r~~W~pd~~~~~C~~C~~~Fsl~~RrHHCR~CG~ifC~~Cs~~~v~l~~~ 79 (1731)
.+...|.|+||+.+..||.|...|++.+||||||+||+|+|+.|+..+..+...
T Consensus 544 lgkkqP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl 597 (1287)
T KOG1841|consen 544 LGKKQPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYL 597 (1287)
T ss_pred cCCCCCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhc
Confidence 345578999999999999999999999999999999999999999988776654
No 61
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=2.3e-08 Score=117.01 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=58.5
Q ss_pred CCCCCCccCCCccccccccccCC-CCcccccccccCceEeCCCCCCcc--cCCCCCCcccccCCcccccchhhHHHHhc
Q 000278 28 LSRDFWMPDQSCRVCYECDSQFT-VFNRRHHCRLCGRVFCGQCTSNSI--PAPSVDPKTAQEQWEKLRVCNYCFKQWQL 103 (1731)
Q Consensus 28 ~~r~~W~pd~~~~~C~~C~~~Fs-l~~RrHHCR~CG~ifC~~Cs~~~v--~l~~~~~~~~~~~~~~vRVC~~C~~~l~~ 103 (1731)
-..|.|.+++....|+.|...|+ +..||||||.||.+||-.|+.-+. +.|... ..++|||+.|+..+..
T Consensus 149 ~~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p~a~-------d~l~RVldS~~~nl~~ 220 (473)
T KOG1843|consen 149 GEAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVPFAA-------DPLQRVLDSCAFNLES 220 (473)
T ss_pred CcCccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCCccc-------CCHHHHHhhHhhccCC
Confidence 45788999999999999999999 889999999999999999986544 443322 4689999999999943
No 62
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.11 E-value=8.3e-07 Score=102.65 Aligned_cols=75 Identities=29% Similarity=0.778 Sum_probs=59.6
Q ss_pred cCCCCCCCCCCCCccCCCccccccccccCC-----------CCcccccccccCceEeCCCCCCcccCCCCCCcccccCCc
Q 000278 21 WRSEPSHLSRDFWMPDQSCRVCYECDSQFT-----------VFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWE 89 (1731)
Q Consensus 21 ~~~~~~~~~r~~W~pd~~~~~C~~C~~~Fs-----------l~~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~ 89 (1731)
|+.--...+.|.|+.+. .|..|..+|. +-.|.||||.||..+|..|++++...|..+.. -
T Consensus 267 w~mn~~r~etpewl~s~---~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e------~ 337 (404)
T KOG1409|consen 267 WNMNVKRVETPEWLDSD---SCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFE------F 337 (404)
T ss_pred EeccceeecCccccccc---hhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccce------e
Confidence 33334456778899887 4888899884 23589999999999999999999988877743 4
Q ss_pred ccccchhhHHHHhcc
Q 000278 90 KLRVCNYCFKQWQLG 104 (1731)
Q Consensus 90 ~vRVC~~C~~~l~~~ 104 (1731)
.+|+|+.||..+...
T Consensus 338 ~vR~~~~c~~~i~~~ 352 (404)
T KOG1409|consen 338 SVRVCDSCYPTIKDE 352 (404)
T ss_pred EEEEecccchhhhcC
Confidence 799999999988543
No 63
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=97.78 E-value=8.5e-06 Score=100.00 Aligned_cols=97 Identities=20% Similarity=0.307 Sum_probs=71.8
Q ss_pred CCCCccCCCccccccccccCC-CCcccccccccCceEeCCCCCCcccCCCCCCcccccCCcccccchhhHHHHhcccccc
Q 000278 30 RDFWMPDQSCRVCYECDSQFT-VFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFKQWQLGVATL 108 (1731)
Q Consensus 30 r~~W~pd~~~~~C~~C~~~Fs-l~~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~~l~~~~~~~ 108 (1731)
.++| +.+...|..|+.+|+ ...|||||+.||.++|+.|+.++..+.... ....|||..||........+.
T Consensus 408 ~~r~--~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~~~~-------s~ssrv~~~~~~~~~~a~~s~ 478 (623)
T KOG4424|consen 408 APRR--DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLSYDN-------SRSSRVCMDRYLTPSGAPGSP 478 (623)
T ss_pred Cccc--ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhcccc-------cchhhhhhhhccCCCCCCCCc
Confidence 3467 888889999999998 788999999999999999999987766433 457899999998764433322
Q ss_pred ---CCCCccccccccccCcccccccccccc
Q 000278 109 ---HNGTLEEEYGVYRSDSETRHFYGPLEF 135 (1731)
Q Consensus 109 ---~~~~~~~~~~~~~s~~~~~~~~~~~~~ 135 (1731)
+.+..+.+-....-.+..+++|.+.++
T Consensus 479 ~~rr~~~l~~~~a~~s~~~~~~s~l~~~~~ 508 (623)
T KOG4424|consen 479 PKRRQSILEIELATVSKENVICSHLKYMEA 508 (623)
T ss_pred hhcccccccccccccCCCceehhhHHHHhh
Confidence 234455555555556666666666665
No 64
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=97.38 E-value=9.1e-05 Score=99.26 Aligned_cols=106 Identities=9% Similarity=-0.153 Sum_probs=81.3
Q ss_pred CCCCCCCcccceeEEEecCcEEEEEEEecCCcCCCCCCCCcEEEEeccCCCCCCCCCCCCcceEeccchhhccchHhHhh
Q 000278 828 CRSCDMPSEAHVHCYTHRQGTLTISVKKLPEILLPGEREGKIWMWHRCLQCPRINGFPPATRRVIMSDAAWGLSFGKFLE 907 (1731)
Q Consensus 828 C~sC~~pm~~H~r~yvH~~g~ltI~v~~l~~~~lpg~~~~~I~mWs~C~~C~~~~g~~~~T~~v~mSd~tw~~SFgKfLE 907 (1731)
|..|+.||..|++.++|..- .+.- +.. ...++++.+ +|.||++|..|+. -+-+ +|...+|++++|+++|
T Consensus 659 ~~~~~~~~~~~lv~~~es~~-~~~~-~s~-~~~~~~l~e-~~~~~~~~~~~k~------~~~~-~~~~~~~~~~~~~~~e 727 (1598)
T KOG0230|consen 659 SSYSKGPKQNGLVPAHESVL-NDLH-EST-LSILSKLPE-TRSGTHEGNEDKG------PGLE-PELANNQNIQRPEETE 727 (1598)
T ss_pred hhhcCchhhccccccccccc-cccc-ccc-ccccccccc-hhcccchhccccC------cccc-ccccccccccchhhhh
Confidence 34589999999999999977 2222 222 234666654 8999999999996 3666 8999999999999999
Q ss_pred hhcccccccCCcCCCCCccccceeeecccCCEEEEEEeeeee
Q 000278 908 LSFSNHAAASRVASCGHSLHRDCLRFYGFGKMVACFRYASID 949 (1731)
Q Consensus 908 L~F~~~~~~~r~~~C~H~l~rDh~ryFg~~~~va~f~y~~I~ 949 (1731)
-. +...+.+...|.|.+---|.|+| +.++| ++-..|.
T Consensus 728 ~~--~s~~~~~~~~HQsilVl~ss~~~-~k~~~--C~r~~l~ 764 (1598)
T KOG0230|consen 728 EQ--SSKDALDPSSHQSILVLFSSRSV-LKGSV--CERPHLL 764 (1598)
T ss_pred hh--hcccCCCccccceeEEEEeeeee-ccCCc--cccccEE
Confidence 98 44556677889999999999999 88887 3444444
No 65
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=97.16 E-value=6.1e-05 Score=91.79 Aligned_cols=66 Identities=29% Similarity=0.614 Sum_probs=52.1
Q ss_pred CCCCccCC----Ccccccc-ccccCCCCcccccccccCceEeCCCCCCcccCCCCCCcccccCCcccccchhhHHHH
Q 000278 30 RDFWMPDQ----SCRVCYE-CDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFKQW 101 (1731)
Q Consensus 30 r~~W~pd~----~~~~C~~-C~~~Fsl~~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~~l 101 (1731)
+..|+||. .-.-|+. |+..|..|+||||||.||...|+.|...+.....-+ +..+.++|+.|+.+-
T Consensus 313 l~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~g------se~~Adg~Dq~psvs 383 (1141)
T KOG1811|consen 313 LHNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCG------SENPADGCDQCPSVS 383 (1141)
T ss_pred hhhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhccc------ccCcccccccccchh
Confidence 45799998 4456774 677899999999999999999999998766544433 235899999999654
No 66
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=93.67 E-value=0.047 Score=56.79 Aligned_cols=51 Identities=29% Similarity=0.645 Sum_probs=39.6
Q ss_pred ccccccccccCCCC-cccccccccCceEeCCCCCCcccCCCCCCcccccCCcccccchhhHHHHh
Q 000278 39 CRVCYECDSQFTVF-NRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFKQWQ 102 (1731)
Q Consensus 39 ~~~C~~C~~~Fsl~-~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~~l~ 102 (1731)
...|..|+.+|+++ ++.+-|..|+.-+|.+|... .+ +.+.-+|+.|++.-.
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---~~----------~~~~WlC~vC~k~re 105 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---SK----------KEPIWLCKVCQKQRE 105 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---TS----------SSCCEEEHHHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc---CC----------CCCCEEChhhHHHHH
Confidence 34899999999955 78999999999999999965 11 246889999998653
No 67
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.68 E-value=0.041 Score=65.61 Aligned_cols=68 Identities=19% Similarity=0.470 Sum_probs=55.8
Q ss_pred CCccCCCccccccccccCCCCcccccccc--cCceEeCCCCCCcccCCCCCCcccccCCcccccchhhHHHHhccccc
Q 000278 32 FWMPDQSCRVCYECDSQFTVFNRRHHCRL--CGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFKQWQLGVAT 107 (1731)
Q Consensus 32 ~W~pd~~~~~C~~C~~~Fsl~~RrHHCR~--CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~~l~~~~~~ 107 (1731)
.|.-+..+..|..|..+|..++-.-||-+ ||+|||-.|+.-.+|-... .++.+||.-|+..+......
T Consensus 461 e~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Katvp~l~~--------e~~akv~rlq~eL~~seq~~ 530 (542)
T KOG0993|consen 461 EWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCLKATVPSLPN--------ERPAKVCRLQHELLNSEQKP 530 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHhhcccccc--------cchHHHHHHHHHHhhhccCC
Confidence 37788888899999999999998899987 9999999999876653322 36899999999988765443
No 68
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=86.01 E-value=0.18 Score=59.95 Aligned_cols=68 Identities=25% Similarity=0.385 Sum_probs=49.8
Q ss_pred CCCccCCCccccccccccCCCCcccccccccCceEeCCCCC-CcccCC-CCCCcccccCCcccccchhhHHH
Q 000278 31 DFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTS-NSIPAP-SVDPKTAQEQWEKLRVCNYCFKQ 100 (1731)
Q Consensus 31 ~~W~pd~~~~~C~~C~~~Fsl~~RrHHCR~CG~ifC~~Cs~-~~v~l~-~~~~~~~~~~~~~vRVC~~C~~~ 100 (1731)
..|+-+.++..|..|...|.++.|+||||.||++||..|+. +..... ..... .-.....+.|..|+..
T Consensus 12 ~~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~--~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 12 VDWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSF--FLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccc--cccccchhhcccccCH
Confidence 35899999999999999999999999999999999999987 221111 11111 1123466778888766
No 69
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=85.72 E-value=0.45 Score=63.69 Aligned_cols=55 Identities=22% Similarity=0.380 Sum_probs=45.6
Q ss_pred CCCCccCCCccccccccccCCCCcccccccccCceEeCCCCCCcccCCCCCCcccccCCcccccchhhHHHHhc
Q 000278 30 RDFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFKQWQL 103 (1731)
Q Consensus 30 r~~W~pd~~~~~C~~C~~~Fsl~~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~~l~~ 103 (1731)
++.|.+|..+..|+.|.+.|..+.+||||| |.+| +...+ ....|+|+.|...++.
T Consensus 648 ksVw~aDg~aPng~la~t~~~~~~e~~hsr--~~ls----------~~~~s-------~~~~~~~n~t~s~~rn 702 (1287)
T KOG1841|consen 648 KSVWFADGIAPNGELAETRFTFTGERHHSR--GKLS----------LLYSS-------RKEARPCNITHSVLRN 702 (1287)
T ss_pred cceeccCCcCCCceecccceeeeccccccc--cccc----------ccccc-------cccCCCCcccCccchh
Confidence 567999999999999999999999999999 8877 11111 3468999999998765
No 70
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=71.16 E-value=2 Score=46.85 Aligned_cols=25 Identities=36% Similarity=0.765 Sum_probs=18.8
Q ss_pred ccccccccCC------------CCcccccccccCceE
Q 000278 41 VCYECDSQFT------------VFNRRHHCRLCGRVF 65 (1731)
Q Consensus 41 ~C~~C~~~Fs------------l~~RrHHCR~CG~if 65 (1731)
.|+.|+.+++ ..+|+++|+.||..|
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f 38 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRF 38 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcc
Confidence 5888888772 345678899888877
No 71
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=61.10 E-value=2.1 Score=37.97 Aligned_cols=30 Identities=30% Similarity=0.815 Sum_probs=19.6
Q ss_pred ccccccccCCCC------cccccccccCceEeCCCC
Q 000278 41 VCYECDSQFTVF------NRRHHCRLCGRVFCGQCT 70 (1731)
Q Consensus 41 ~C~~C~~~Fsl~------~RrHHCR~CG~ifC~~Cs 70 (1731)
.|..|.++|... ..+..|..|+.+||..|=
T Consensus 1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD 36 (51)
T PF07975_consen 1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD 36 (51)
T ss_dssp EETTTTEE-TTS-------EEE--TTTT--B-HHHH
T ss_pred CCccCCCCCCCcccccccCCeEECCCCCCccccCcC
Confidence 489999999865 368999999999999885
No 72
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.77 E-value=1.7 Score=50.65 Aligned_cols=52 Identities=23% Similarity=0.663 Sum_probs=43.1
Q ss_pred cCCCccccccccccCCCCcccccccccCceEeCCCCCCcccCCCCCCcccccCCcccccchhhHHHH
Q 000278 35 PDQSCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFKQW 101 (1731)
Q Consensus 35 pd~~~~~C~~C~~~Fsl~~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~~l 101 (1731)
+.....+|..|+..|..+.+||-|--|-+-||..|+ ++. ...|.|..|...-
T Consensus 40 ~~~~~p~ckacg~~f~~~~~k~~c~dckk~fc~tcs--~v~-------------~~lr~c~~c~r~~ 91 (350)
T KOG4275|consen 40 SSSQAPHCKACGEEFEDAQSKSDCEDCKKEFCATCS--RVS-------------ISLRTCTSCRRVN 91 (350)
T ss_pred cccccchhhhhchhHhhhhhhhhhhhhhHHHHHHHH--Hhc-------------ccchhhhHHHHHH
Confidence 445556899999999999999999999999999999 332 2478899998753
No 73
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=58.23 E-value=5.1 Score=41.18 Aligned_cols=26 Identities=35% Similarity=0.828 Sum_probs=18.9
Q ss_pred cccccccccCCCCcc-cccccccCceE
Q 000278 40 RVCYECDSQFTVFNR-RHHCRLCGRVF 65 (1731)
Q Consensus 40 ~~C~~C~~~Fsl~~R-rHHCR~CG~if 65 (1731)
..|+.|+++|==++| --+|..||..|
T Consensus 10 R~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 10 RTCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred ccCCCCcchhccCCCCCccCCCCCCcc
Confidence 369999999974444 44588887765
No 74
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.99 E-value=11 Score=38.91 Aligned_cols=40 Identities=28% Similarity=0.686 Sum_probs=29.7
Q ss_pred CccCCCccccccccccCCCC----------cccccccccCceEeCCCCCC
Q 000278 33 WMPDQSCRVCYECDSQFTVF----------NRRHHCRLCGRVFCGQCTSN 72 (1731)
Q Consensus 33 W~pd~~~~~C~~C~~~Fsl~----------~RrHHCR~CG~ifC~~Cs~~ 72 (1731)
|........|..|.++|.-. ..|.-|..|+.+||..|=.+
T Consensus 49 ~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f 98 (112)
T TIGR00622 49 LEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVF 98 (112)
T ss_pred ccccCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchh
Confidence 33333345799999999732 34677999999999999754
No 75
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=55.93 E-value=6.2 Score=41.28 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=20.3
Q ss_pred cccccccccCC-CCcccccccccCceE
Q 000278 40 RVCYECDSQFT-VFNRRHHCRLCGRVF 65 (1731)
Q Consensus 40 ~~C~~C~~~Fs-l~~RrHHCR~CG~if 65 (1731)
..|+.|+++|= |.++--+|..||.+|
T Consensus 10 r~Cp~cg~kFYDLnk~p~vcP~cg~~~ 36 (129)
T TIGR02300 10 RICPNTGSKFYDLNRRPAVSPYTGEQF 36 (129)
T ss_pred ccCCCcCccccccCCCCccCCCcCCcc
Confidence 36999999997 556667788888765
No 76
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.85 E-value=2 Score=47.11 Aligned_cols=48 Identities=25% Similarity=0.578 Sum_probs=33.3
Q ss_pred ccccccccccCCCCcccccccccCceEeCCCCCCcccCCCCCCcccccCCcccccchhhHHHHh
Q 000278 39 CRVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFKQWQ 102 (1731)
Q Consensus 39 ~~~C~~C~~~Fsl~~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~~l~ 102 (1731)
+-.|++|-..|+- +-----.||.|||..|....+. ..++|..|.+++.
T Consensus 131 ~~~CPiCl~~~se--k~~vsTkCGHvFC~~Cik~alk--------------~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 131 TYKCPICLDSVSE--KVPVSTKCGHVFCSQCIKDALK--------------NTNKCPTCRKKIT 178 (187)
T ss_pred ccCCCceecchhh--ccccccccchhHHHHHHHHHHH--------------hCCCCCCcccccc
Confidence 3578888777751 1113358999999999976432 4678999987664
No 77
>PF07450 HycH: Formate hydrogenlyase maturation protein HycH; InterPro: IPR010005 This family contains the bacterial formate hydrogenlyase maturation protein HycH, which is approximately 140 residues long. This may be required for the conversion of a precursor form of the large subunit of hydrogenlyase 3 into a mature form [].
Probab=48.23 E-value=9.8 Score=40.07 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=18.5
Q ss_pred CCcccccceEEEecCcceEEEeeeehhhc
Q 000278 1628 IDVMDYSLLVGVDEENHQLVLGIIDFMRQ 1656 (1731)
Q Consensus 1628 ~nvMDYSLLvGi~~~~~~~~~GIID~L~~ 1656 (1731)
..||=|||-||-| +|+||||..
T Consensus 24 kqV~yYSLaIGHh-------vGvIDcle~ 45 (131)
T PF07450_consen 24 KQVMYYSLAIGHH-------VGVIDCLEK 45 (131)
T ss_pred hheeEEEeeeccc-------cceEeechh
Confidence 3588899999976 899999954
No 78
>PRK15084 formate hydrogenlyase maturation protein HycH; Provisional
Probab=47.23 E-value=11 Score=39.86 Aligned_cols=22 Identities=41% Similarity=0.715 Sum_probs=18.6
Q ss_pred CCcccccceEEEecCcceEEEeeeehhhc
Q 000278 1628 IDVMDYSLLVGVDEENHQLVLGIIDFMRQ 1656 (1731)
Q Consensus 1628 ~nvMDYSLLvGi~~~~~~~~~GIID~L~~ 1656 (1731)
..||=|||-||-| +|+||||..
T Consensus 26 ~qV~yYSLaIGHh-------vGvIDcle~ 47 (133)
T PRK15084 26 QQVMYYSLAIGHH-------VGVIDCLEA 47 (133)
T ss_pred hheeEEEeecccc-------cceEecchh
Confidence 3678899999977 899999954
No 79
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=47.12 E-value=5.3 Score=44.53 Aligned_cols=34 Identities=35% Similarity=0.853 Sum_probs=26.7
Q ss_pred cCCCccccccccccCC---CCc---------ccccccccCceEeCC
Q 000278 35 PDQSCRVCYECDSQFT---VFN---------RRHHCRLCGRVFCGQ 68 (1731)
Q Consensus 35 pd~~~~~C~~C~~~Fs---l~~---------RrHHCR~CG~ifC~~ 68 (1731)
+|...-.|..|++.|+ +++ +||-|+.||+-|=..
T Consensus 113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndt 158 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDT 158 (267)
T ss_pred CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccch
Confidence 4566678999999998 343 588999999988553
No 80
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=44.83 E-value=12 Score=30.97 Aligned_cols=26 Identities=38% Similarity=0.931 Sum_probs=20.1
Q ss_pred cccccccccCCCC-------cccccccccCceE
Q 000278 40 RVCYECDSQFTVF-------NRRHHCRLCGRVF 65 (1731)
Q Consensus 40 ~~C~~C~~~Fsl~-------~RrHHCR~CG~if 65 (1731)
..|+.|++.|.+- .++.-|..||.+|
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 3699999999744 3577788888876
No 81
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=44.11 E-value=12 Score=30.96 Aligned_cols=25 Identities=32% Similarity=0.967 Sum_probs=19.1
Q ss_pred ccccccccCCCC-------cccccccccCceE
Q 000278 41 VCYECDSQFTVF-------NRRHHCRLCGRVF 65 (1731)
Q Consensus 41 ~C~~C~~~Fsl~-------~RrHHCR~CG~if 65 (1731)
.|+.|++.|.+- .++--|..||.+|
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 699999999743 3567788888876
No 82
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=40.99 E-value=3.7 Score=54.09 Aligned_cols=42 Identities=29% Similarity=0.774 Sum_probs=30.8
Q ss_pred ccccccccccCC--CCcccccccccCceEeCCCCCCcccCCCCCCcccccCCcccccchhhHH
Q 000278 39 CRVCYECDSQFT--VFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFK 99 (1731)
Q Consensus 39 ~~~C~~C~~~Fs--l~~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~ 99 (1731)
.-.|+.|...+- ++ -.||++||..|...+.. ..+|-|..|-.
T Consensus 643 ~LkCs~Cn~R~Kd~vI------~kC~H~FC~~Cvq~r~e-------------tRqRKCP~Cn~ 686 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVI------TKCGHVFCEECVQTRYE-------------TRQRKCPKCNA 686 (698)
T ss_pred ceeCCCccCchhhHHH------HhcchHHHHHHHHHHHH-------------HhcCCCCCCCC
Confidence 347999997553 11 37999999999976542 46888999954
No 83
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=40.84 E-value=15 Score=30.80 Aligned_cols=27 Identities=33% Similarity=0.939 Sum_probs=19.9
Q ss_pred cccccccCCCCcccccccccCceEeCCCC
Q 000278 42 CYECDSQFTVFNRRHHCRLCGRVFCGQCT 70 (1731)
Q Consensus 42 C~~C~~~Fsl~~RrHHCR~CG~ifC~~Cs 70 (1731)
|..|++.-.+. ...|+.||.+||...-
T Consensus 1 C~~C~~~~~l~--~f~C~~C~~~FC~~HR 27 (39)
T smart00154 1 CHFCRKKVGLT--GFKCRHCGNLFCGEHR 27 (39)
T ss_pred CcccCCccccc--CeECCccCCccccccC
Confidence 56677755544 5789999999998643
No 84
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.39 E-value=8.9 Score=48.49 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=38.3
Q ss_pred cccccccccCCCCcccccccccCceEeCCCCCCcccCCCCCCcccccCCcccccchhhHHHHhc
Q 000278 40 RVCYECDSQFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFKQWQL 103 (1731)
Q Consensus 40 ~~C~~C~~~Fsl~~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~~l~~ 103 (1731)
..|+.|-.++.+-.|- .||.|||..|.=..+..+. ...-+-|.-|+..+..
T Consensus 187 ~~CPICL~~~~~p~~t----~CGHiFC~~CiLqy~~~s~---------~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 187 MQCPICLEPPSVPVRT----NCGHIFCGPCILQYWNYSA---------IKGPCSCPICRSTITL 237 (513)
T ss_pred CcCCcccCCCCccccc----ccCceeeHHHHHHHHhhhc---------ccCCccCCchhhhccc
Confidence 5799999998865553 4999999999866554441 2457889999998743
No 85
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=39.66 E-value=20 Score=32.41 Aligned_cols=33 Identities=27% Similarity=0.629 Sum_probs=20.9
Q ss_pred ccccc--ccccCCCCccc----ccccccCceEeCCCCCC
Q 000278 40 RVCYE--CDSQFTVFNRR----HHCRLCGRVFCGQCTSN 72 (1731)
Q Consensus 40 ~~C~~--C~~~Fsl~~Rr----HHCR~CG~ifC~~Cs~~ 72 (1731)
..|+. |+..|..-... -.|..||..||..|...
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 57 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEP 57 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSE
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcc
Confidence 47866 99988644432 67999999999999854
No 86
>PLN02667 inositol polyphosphate multikinase
Probab=37.71 E-value=52 Score=39.78 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=44.3
Q ss_pred ecCCcEEEeecC-----HHHHHHHHHHHHH--HHHHHHhhcCCCCCceeeeeeeEEEEEeeccCCCceeeeeEEEeeccc
Q 000278 1488 TLDDRFIIKQVT-----KTELESFIKFAPE--YFKYLSESISTGSPTCLAKILGIYQVTTKHLKGGRESKMDVLVMENLL 1560 (1731)
Q Consensus 1488 T~D~rfiiKti~-----~~E~~~f~~~~p~--Yf~y~~~~~~~~~~TlL~ki~G~y~i~~~~~~~g~~~k~~~iVMeNlf 1560 (1731)
+.|+..|+|-+. ..|+++...+... .-.. ..-++++++|...+... .|+ .+||||||-
T Consensus 23 ~~~~g~~~Kp~~~~~rg~rE~~FY~~~~~~~~~~~~--------L~~~~P~y~G~~~~~~~---~~~----~~i~LeDLt 87 (286)
T PLN02667 23 VDDSGRFYKPLQDDSRGEREAAFYESFSSDTRVPDH--------IRRFFPVFHGTQLVEAS---DGS----GLLVLEDLL 87 (286)
T ss_pred EcCCCcEEeccCCcccchHHHHHHHHHhccccchHH--------HHhhCcccceeEeeccC---CCc----eeEEehHHh
Confidence 347778899997 7888776655310 0011 12478999999887542 243 379999999
Q ss_pred CCCCceeeeecC
Q 000278 1561 FSRSVTQLYDLK 1572 (1731)
Q Consensus 1561 ~~~~i~~~yDLK 1572 (1731)
++..---+=|||
T Consensus 88 ~g~~~PcVlDlK 99 (286)
T PLN02667 88 AGYTKPCVMDVK 99 (286)
T ss_pred cCCCCCeEEEEE
Confidence 885333344444
No 87
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=36.24 E-value=91 Score=30.43 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=32.7
Q ss_pred HHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHH
Q 000278 415 KIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERI 457 (1731)
Q Consensus 415 kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerI 457 (1731)
.+...++++||+ +.|...+...|.++||.++.......=+-|
T Consensus 48 ~l~~~~v~~li~-~~iG~~~~~~L~~~gI~v~~~~~~~i~~~l 89 (94)
T PF02579_consen 48 FLAEEGVDVLIC-GGIGEGAFRALKEAGIKVYQGAGGDIEEAL 89 (94)
T ss_dssp HHHHTTESEEEE-SCSCHHHHHHHHHTTSEEEESTSSBHHHHH
T ss_pred HHHHcCCCEEEE-eCCCHHHHHHHHHCCCEEEEcCCCCHHHHH
Confidence 455689999988 558999999999999999998544433333
No 88
>PHA02768 hypothetical protein; Provisional
Probab=35.46 E-value=13 Score=33.60 Aligned_cols=25 Identities=24% Similarity=0.475 Sum_probs=17.7
Q ss_pred ccccccccCCCC------ccccc----ccccCceE
Q 000278 41 VCYECDSQFTVF------NRRHH----CRLCGRVF 65 (1731)
Q Consensus 41 ~C~~C~~~Fsl~------~RrHH----CR~CG~if 65 (1731)
.|..|++.|+.. .|+|+ |-.||++|
T Consensus 7 ~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f 41 (55)
T PHA02768 7 ECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRIS 41 (55)
T ss_pred CcchhCCeeccHHHHHHHHHhcCCcccCCccccee
Confidence 699999999732 24444 77777766
No 89
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=35.45 E-value=77 Score=35.10 Aligned_cols=51 Identities=33% Similarity=0.371 Sum_probs=36.4
Q ss_pred HHHHHHcCCCEEEEcccccHHHHHHHHHcCceee-ccCC------hhHHHHHHHHhCC
Q 000278 413 VAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLV-LNTR------RPLLERISRCTGA 463 (1731)
Q Consensus 413 V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v-~~Vk------~~~LerIAr~TGA 463 (1731)
+++|++++|+|||..........+.|.+.||.++ .... ...++.+++.+|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 3478899999999976655557788999999653 3322 1346778888775
No 90
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.19 E-value=1.5e+02 Score=31.40 Aligned_cols=78 Identities=23% Similarity=0.326 Sum_probs=55.5
Q ss_pred EEecHHHHHHHHHHhCCChHHHHHhhcc---------------cccCC-CCCCCcce----eEEEecCCcEEE-------
Q 000278 1443 TCYYARRFEALRKICCPSELDYVRSLSR---------------CKKWG-AKGGKSNV----FFAKTLDDRFII------- 1495 (1731)
Q Consensus 1443 ~~y~p~~F~~LR~~~~~~~~~y~~Sl~~---------------~~~~~-~~gGKSgs----~F~~T~D~rfii------- 1495 (1731)
.+|--..|..+-+..++++.++...+.. -.+|. ...||||. .||+..+.-|.+
T Consensus 2 rifkt~~F~r~akk~~~sd~~L~~ai~el~~G~~~adLGGgv~K~Ria~~g~GKsGG~R~I~~~~~~~~~~~l~~y~K~~ 81 (120)
T PF06296_consen 2 RIFKTKWFKRWAKKEGLSDDDLCEAIEELEQGLIDADLGGGVRKKRIARKGKGKSGGYRVIYFFKQEDRIFFLYIYAKNE 81 (120)
T ss_pred ceeecHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccchhccEEEEEeccCCCCCCCceEEEEEEEeCCEEEEEEEEcccc
Confidence 3566788999999999999888776542 12343 34689985 355555544444
Q ss_pred -eecCHHHHHHHHHHHHHHHHHHHhh
Q 000278 1496 -KQVTKTELESFIKFAPEYFKYLSES 1520 (1731)
Q Consensus 1496 -Kti~~~E~~~f~~~~p~Yf~y~~~~ 1520 (1731)
-.|+..|++.|.+++..|+++-.+.
T Consensus 82 ~~nis~~El~~lk~la~~l~~~~~~~ 107 (120)
T PF06296_consen 82 KANISDKELKALKKLAKELLNLSEEQ 107 (120)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 2468999999999999999886654
No 91
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=33.43 E-value=22 Score=27.33 Aligned_cols=23 Identities=30% Similarity=0.742 Sum_probs=14.4
Q ss_pred ccccccccCCCCcccccccccCceE
Q 000278 41 VCYECDSQFTVFNRRHHCRLCGRVF 65 (1731)
Q Consensus 41 ~C~~C~~~Fsl~~RrHHCR~CG~if 65 (1731)
.|+.|++.-.... .-|.+||..|
T Consensus 2 ~CP~C~~~V~~~~--~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESA--KFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhc--CcCCCCCCCC
Confidence 5777777654333 3477777765
No 92
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=33.10 E-value=26 Score=31.74 Aligned_cols=30 Identities=30% Similarity=0.695 Sum_probs=19.1
Q ss_pred CCC-C-ccCCCccccccccccCCCCccccc-ccccCc
Q 000278 30 RDF-W-MPDQSCRVCYECDSQFTVFNRRHH-CRLCGR 63 (1731)
Q Consensus 30 r~~-W-~pd~~~~~C~~C~~~Fsl~~RrHH-CR~CG~ 63 (1731)
+.+ | ..-.....|..|+. +.+.|| |..||.
T Consensus 15 Rah~~kl~~p~l~~C~~cG~----~~~~H~vc~~cG~ 47 (55)
T TIGR01031 15 RSHDAKLTAPTLVVCPNCGE----FKLPHRVCPSCGY 47 (55)
T ss_pred hcCcccccCCcceECCCCCC----cccCeeECCccCe
Confidence 444 6 44455567888887 445555 777773
No 93
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=32.67 E-value=23 Score=30.65 Aligned_cols=25 Identities=20% Similarity=0.547 Sum_probs=18.8
Q ss_pred ccccccccCCCCcc--cccccccCceE
Q 000278 41 VCYECDSQFTVFNR--RHHCRLCGRVF 65 (1731)
Q Consensus 41 ~C~~C~~~Fsl~~R--rHHCR~CG~if 65 (1731)
.|..|+..|.+-.. ..+|..||.-+
T Consensus 5 ~C~~CG~~~~~~~~~~~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGTGVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCCceECCCCCCeE
Confidence 69999999875544 57888888744
No 94
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=32.58 E-value=69 Score=38.38 Aligned_cols=52 Identities=13% Similarity=0.159 Sum_probs=40.4
Q ss_pred HHHHHHcCCCEEEEcccccHHHHHHHHHcCceeecc-C-----ChhHHHHHHHHhCCe
Q 000278 413 VAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLN-T-----RRPLLERISRCTGAQ 464 (1731)
Q Consensus 413 V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~-V-----k~~~LerIAr~TGA~ 464 (1731)
+++|++++|+|||+....+....+.|.+.||.++.- . -...++.|++.+|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 448999999999998888888889999999987632 2 123478888888864
No 95
>PRK00420 hypothetical protein; Validated
Probab=32.44 E-value=27 Score=36.22 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=14.5
Q ss_pred cccccccccCCC-CcccccccccCc
Q 000278 40 RVCYECDSQFTV-FNRRHHCRLCGR 63 (1731)
Q Consensus 40 ~~C~~C~~~Fsl-~~RrHHCR~CG~ 63 (1731)
..|+.|+.+|.- -..+.-|..||.
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg~ 48 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVHGK 48 (112)
T ss_pred CCCCCCCCcceecCCCceECCCCCC
Confidence 579999988753 333333444444
No 96
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=31.81 E-value=75 Score=31.61 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=32.1
Q ss_pred HHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCC
Q 000278 412 AVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTR 450 (1731)
Q Consensus 412 ~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk 450 (1731)
+++.+...++++|++. ++..-++..|.++||.++.-..
T Consensus 55 ~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 55 AAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 3445667899999995 6999999999999999997765
No 97
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=31.17 E-value=34 Score=31.92 Aligned_cols=28 Identities=21% Similarity=0.500 Sum_probs=22.5
Q ss_pred CccccccccccCC--CCcccccccccCceE
Q 000278 38 SCRVCYECDSQFT--VFNRRHHCRLCGRVF 65 (1731)
Q Consensus 38 ~~~~C~~C~~~Fs--l~~RrHHCR~CG~if 65 (1731)
..+.|+.|+..-. ...|.++|..||..+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEM 56 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEE
Confidence 4567999998765 477889999999874
No 98
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=31.02 E-value=24 Score=32.08 Aligned_cols=7 Identities=71% Similarity=1.654 Sum_probs=4.3
Q ss_pred ccccCce
Q 000278 58 CRLCGRV 64 (1731)
Q Consensus 58 CR~CG~i 64 (1731)
||.||+.
T Consensus 19 CRRCGr~ 25 (61)
T COG2126 19 CRRCGRR 25 (61)
T ss_pred hhhccch
Confidence 6666654
No 99
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=30.91 E-value=83 Score=39.19 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCC---h----hHHHHHHHHhCCe
Q 000278 413 VAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTR---R----PLLERISRCTGAQ 464 (1731)
Q Consensus 413 V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk---~----~~LerIAr~TGA~ 464 (1731)
+++|++++|+|||....-.....+.|.+.||.++.--. . ..++.|++++|-.
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 56899999999999765556678889999999865321 1 3456777777653
No 100
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.25 E-value=98 Score=35.76 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEEcccccHH-HHHHHHHcCceeeccC--C----hhHHHHHHHHhCCe
Q 000278 413 VAKIEAHHPDVLLVEKSVSRF-AQEYLLAKNVSLVLNT--R----RPLLERISRCTGAQ 464 (1731)
Q Consensus 413 V~kI~~~~pnVVlv~k~Vs~~-Al~~L~~~gI~~v~~V--k----~~~LerIAr~TGA~ 464 (1731)
+++|++++|+|||....-... ..+.|.+.||.++..- . ...++.||..+|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 448999999999997654444 4888999999876432 1 33478888888875
No 101
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.03 E-value=26 Score=38.28 Aligned_cols=27 Identities=33% Similarity=0.876 Sum_probs=20.7
Q ss_pred cCCCCcccccccccCce---EeCCCCCCcccCC
Q 000278 48 QFTVFNRRHHCRLCGRV---FCGQCTSNSIPAP 77 (1731)
Q Consensus 48 ~Fsl~~RrHHCR~CG~i---fC~~Cs~~~v~l~ 77 (1731)
+|.....||.|+.||+. ||..|. +|++
T Consensus 8 ~~d~ieGRs~C~~C~~SRkFfCY~C~---VPV~ 37 (230)
T KOG3795|consen 8 SFDPIEGRSTCPGCKSSRKFFCYDCR---VPVP 37 (230)
T ss_pred ccCcccccccCCCCCCcceEEEEeec---cccC
Confidence 45666789999999964 899997 5544
No 102
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=28.49 E-value=40 Score=29.98 Aligned_cols=27 Identities=33% Similarity=0.684 Sum_probs=19.5
Q ss_pred cccccccccCC-CCcccccccccCceEe
Q 000278 40 RVCYECDSQFT-VFNRRHHCRLCGRVFC 66 (1731)
Q Consensus 40 ~~C~~C~~~Fs-l~~RrHHCR~CG~ifC 66 (1731)
..|+.|+..|- .-..+.+|..||..+.
T Consensus 21 ~fCP~Cg~~~m~~~~~r~~C~~Cgyt~~ 48 (50)
T PRK00432 21 KFCPRCGSGFMAEHLDRWHCGKCGYTEF 48 (50)
T ss_pred CcCcCCCcchheccCCcEECCCcCCEEe
Confidence 47999998532 3346889999998754
No 103
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=26.92 E-value=1.2e+02 Score=30.04 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=31.0
Q ss_pred HHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCC
Q 000278 414 AKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTR 450 (1731)
Q Consensus 414 ~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk 450 (1731)
..+...++++||+.+ +..-++..|.++||.++.-..
T Consensus 55 ~~l~~~~v~~vi~~~-iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 55 RLLALEGCDAVLVGG-IGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHCCCcEEEEcc-cCccHHHHHHHcCCEEEEcCC
Confidence 355678999999975 999999999999999987765
No 104
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.15 E-value=23 Score=37.15 Aligned_cols=51 Identities=29% Similarity=0.699 Sum_probs=36.4
Q ss_pred cccccccc-cCCCCcccccccccCceEeCCCCCCcccCCCCCCcccccCCcccccchhhHHHH
Q 000278 40 RVCYECDS-QFTVFNRRHHCRLCGRVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFKQW 101 (1731)
Q Consensus 40 ~~C~~C~~-~Fsl~~RrHHCR~CG~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~~l 101 (1731)
..|.+|.+ +|-- .=-|.|..|---||++|-.+ +.+. +++..-||+.|-...
T Consensus 66 atC~IC~KTKFAD-G~GH~C~YCq~r~CARCGGr-v~lr---------sNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 66 ATCGICHKTKFAD-GCGHNCSYCQTRFCARCGGR-VSLR---------SNKVMWVCNLCRKQQ 117 (169)
T ss_pred cchhhhhhccccc-ccCcccchhhhhHHHhcCCe-eeec---------cCceEEeccCCcHHH
Confidence 36999987 4532 23499999999999999865 3322 134678999998754
No 105
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=26.03 E-value=29 Score=42.15 Aligned_cols=61 Identities=26% Similarity=0.461 Sum_probs=37.2
Q ss_pred ccccccccc--CCC-------CcccccccccC------ceEeCCCCCCcccCCCCCCcccccCCcccccchhhHHHHh
Q 000278 40 RVCYECDSQ--FTV-------FNRRHHCRLCG------RVFCGQCTSNSIPAPSVDPKTAQEQWEKLRVCNYCFKQWQ 102 (1731)
Q Consensus 40 ~~C~~C~~~--Fsl-------~~RrHHCR~CG------~ifC~~Cs~~~v~l~~~~~~~~~~~~~~vRVC~~C~~~l~ 102 (1731)
..|+.|+.. .++ -.|.-||-.|| ++-|..|-... .+..... ........+-+|..|..-+.
T Consensus 188 ~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~-~l~y~~~-~~~~~~~r~e~C~~C~~YlK 263 (309)
T PRK03564 188 QFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQSG-KLHYWSL-DSEQAAVKAESCGDCGTYLK 263 (309)
T ss_pred CCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCCC-ceeeeee-cCCCcceEeeecccccccce
Confidence 479999986 332 24788999998 56888887632 2211100 00012346788999987653
No 106
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=25.49 E-value=46 Score=30.12 Aligned_cols=34 Identities=29% Similarity=0.677 Sum_probs=25.3
Q ss_pred ccccc--cccccCCC----CcccccccccCceEeCCCCCC
Q 000278 39 CRVCY--ECDSQFTV----FNRRHHCRLCGRVFCGQCTSN 72 (1731)
Q Consensus 39 ~~~C~--~C~~~Fsl----~~RrHHCR~CG~ifC~~Cs~~ 72 (1731)
...|+ .|+..... ....-.|..||..||..|...
T Consensus 18 ~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~ 57 (64)
T smart00647 18 LKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVP 57 (64)
T ss_pred ccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCc
Confidence 34677 78765543 456778999999999999754
No 107
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=25.05 E-value=37 Score=27.95 Aligned_cols=25 Identities=32% Similarity=0.922 Sum_probs=15.8
Q ss_pred ccccccccCCCCcc-------cccccccCceE
Q 000278 41 VCYECDSQFTVFNR-------RHHCRLCGRVF 65 (1731)
Q Consensus 41 ~C~~C~~~Fsl~~R-------rHHCR~CG~if 65 (1731)
.|+.|++.|.+-.. +-.|..||..|
T Consensus 4 ~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~ 35 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLGANGGKVRCGKCGHVW 35 (38)
T ss_pred ECCCCCCEEEeCHHHcCCCCCEEECCCCCCEE
Confidence 58888888864432 34566666554
No 108
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=24.87 E-value=37 Score=41.27 Aligned_cols=37 Identities=30% Similarity=0.723 Sum_probs=20.3
Q ss_pred CCCCCCCCCccCCCcc-----ccccccccCCCCcccccccccCc
Q 000278 25 PSHLSRDFWMPDQSCR-----VCYECDSQFTVFNRRHHCRLCGR 63 (1731)
Q Consensus 25 ~~~~~r~~W~pd~~~~-----~C~~C~~~Fsl~~RrHHCR~CG~ 63 (1731)
+.+.....|.|..... -|..|+. | ---|-||||.|-+
T Consensus 72 gPG~vp~~wkPe~~~D~~~lqfCk~Cqg-Y-KapRSHHCrkCnr 113 (414)
T KOG1314|consen 72 GPGFVPLGWKPENPKDEMFLQFCKKCQG-Y-KAPRSHHCRKCNR 113 (414)
T ss_pred CCCCCCCCCCCCCChhHHHHHHHhhccC-c-CCCccccchHHHH
Confidence 3445567799965543 4555543 1 1235666666543
No 109
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=24.21 E-value=38 Score=45.26 Aligned_cols=30 Identities=30% Similarity=0.857 Sum_probs=18.0
Q ss_pred ccccccccccCCCCcccccccccCce------EeCCCCCC
Q 000278 39 CRVCYECDSQFTVFNRRHHCRLCGRV------FCGQCTSN 72 (1731)
Q Consensus 39 ~~~C~~C~~~Fsl~~RrHHCR~CG~i------fC~~Cs~~ 72 (1731)
++.|..|+.++.. ..|..||.. ||..|-..
T Consensus 15 akFC~~CG~~l~~----~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 15 NRFCQKCGTSLTH----KPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CccccccCCCCCC----CcCCCCCCCCCcccccccccCCc
Confidence 4467777776642 247777765 55555543
No 110
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.59 E-value=36 Score=42.18 Aligned_cols=40 Identities=25% Similarity=0.724 Sum_probs=31.5
Q ss_pred CCccCCCccccccccccCCCCc--ccccccccCceEeCCCCCC
Q 000278 32 FWMPDQSCRVCYECDSQFTVFN--RRHHCRLCGRVFCGQCTSN 72 (1731)
Q Consensus 32 ~W~pd~~~~~C~~C~~~Fsl~~--RrHHCR~CG~ifC~~Cs~~ 72 (1731)
.|+..+ .+.|+.|...-.-.. -|+||-.||.-||.-|+.-
T Consensus 362 kwl~~N-~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~ 403 (445)
T KOG1814|consen 362 KWLESN-SKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAEL 403 (445)
T ss_pred HHHHhc-CCCCCcccceeecCCCccceeeccccccceeehhhh
Confidence 476544 468999999776443 4899999999999999854
No 111
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=23.51 E-value=2e+02 Score=30.40 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=38.5
Q ss_pred HHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHHHhCC
Q 000278 413 VAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGA 463 (1731)
Q Consensus 413 V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr~TGA 463 (1731)
.+.|++.++++||+ ..|.+-|..+|..+||.+..-....+=+.|-....+
T Consensus 58 a~~l~~~gvdvvi~-~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 58 AELLVDEGVDVVIA-SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHcCCCEEEE-CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 34678899999988 689999999999999999987775444444444433
No 112
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.44 E-value=1.3e+02 Score=34.98 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=35.3
Q ss_pred HHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccC----ChhHHHHHHHHhCC
Q 000278 413 VAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNT----RRPLLERISRCTGA 463 (1731)
Q Consensus 413 V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~V----k~~~LerIAr~TGA 463 (1731)
+++|++++|+|||+...... ..+.|.+.|..++... -...++.|++.+|.
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~ 112 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNK 112 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCc
Confidence 34889999999999877655 6677888776655433 23456777777765
No 113
>KOG3173 consensus Predicted Zn-finger protein [General function prediction only]
Probab=23.37 E-value=39 Score=37.58 Aligned_cols=30 Identities=30% Similarity=0.958 Sum_probs=23.9
Q ss_pred CccccccccccCCCCcccccccccCceEeCCCC
Q 000278 38 SCRVCYECDSQFTVFNRRHHCRLCGRVFCGQCT 70 (1731)
Q Consensus 38 ~~~~C~~C~~~Fsl~~RrHHCR~CG~ifC~~Cs 70 (1731)
....|..|++.-++.. .||| ||.+||+..-
T Consensus 104 ~~~rC~~C~kk~gltg--f~Cr-CG~~fC~~HR 133 (167)
T KOG3173|consen 104 KKKRCFKCRKKVGLTG--FKCR-CGNTFCGTHR 133 (167)
T ss_pred cchhhhhhhhhhcccc--cccc-cCCccccccc
Confidence 3456999998888777 8886 9999998643
No 114
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=23.05 E-value=50 Score=36.08 Aligned_cols=50 Identities=28% Similarity=0.397 Sum_probs=29.4
Q ss_pred EEEecHHHH---HHHHHHhCCChHHHHHhhcccccCCCCCCCcceeEEEecCCcEEEee
Q 000278 1442 VTCYYARRF---EALRKICCPSELDYVRSLSRCKKWGAKGGKSNVFFAKTLDDRFIIKQ 1497 (1731)
Q Consensus 1442 ~~~y~p~~F---~~LR~~~~~~~~~y~~Sl~~~~~~~~~gGKSgs~F~~T~D~rfiiKt 1497 (1731)
++-|||.-= ..|..+..+.|-+=+-|.. -+.|+-+++||.|.|.||||=-
T Consensus 102 vkkYyP~TTnld~~lK~RlnL~EgDPViS~G------Dt~GRRaALFYRtSdEr~ill~ 154 (230)
T PF12226_consen 102 VKKYYPGTTNLDQQLKDRLNLTEGDPVISMG------DTTGRRAALFYRTSDERYILLF 154 (230)
T ss_dssp EEEB-GGG--S-HHHHHHHT--TT-EEEEEE------ETT--EEEEEEETTTTEEEEEE
T ss_pred hhhcCCCCccHHHHHHHhhccccCCceeeec------CCCCceEEEEEeccCceEEEEE
Confidence 678888422 2555555555544333333 3578999999999999999854
No 115
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=22.74 E-value=39 Score=45.70 Aligned_cols=24 Identities=33% Similarity=0.797 Sum_probs=13.4
Q ss_pred ccccccccCCCCccc--ccccccCce
Q 000278 41 VCYECDSQFTVFNRR--HHCRLCGRV 64 (1731)
Q Consensus 41 ~C~~C~~~Fsl~~Rr--HHCR~CG~i 64 (1731)
.|+.|+..+++...+ --|+.||..
T Consensus 446 ~Cp~Cd~~lt~H~~~~~L~CH~Cg~~ 471 (730)
T COG1198 446 ECPNCDSPLTLHKATGQLRCHYCGYQ 471 (730)
T ss_pred cCCCCCcceEEecCCCeeEeCCCCCC
Confidence 466777776654433 335555553
No 116
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=22.66 E-value=49 Score=39.33 Aligned_cols=39 Identities=26% Similarity=0.717 Sum_probs=31.7
Q ss_pred CccCCCccccccccccCC----------CCcccccccccCceEeCCCCC
Q 000278 33 WMPDQSCRVCYECDSQFT----------VFNRRHHCRLCGRVFCGQCTS 71 (1731)
Q Consensus 33 W~pd~~~~~C~~C~~~Fs----------l~~RrHHCR~CG~ifC~~Cs~ 71 (1731)
|-..-....|..|+.+|. +...|..|..|-.-||..|-.
T Consensus 356 ~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdv 404 (421)
T COG5151 356 EGTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDV 404 (421)
T ss_pred CCCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHH
Confidence 555566678999999884 335799999999999999964
No 117
>PF12773 DZR: Double zinc ribbon
Probab=21.43 E-value=58 Score=28.42 Aligned_cols=27 Identities=19% Similarity=0.604 Sum_probs=18.2
Q ss_pred CCccccccccccCC-CCcccccccccCc
Q 000278 37 QSCRVCYECDSQFT-VFNRRHHCRLCGR 63 (1731)
Q Consensus 37 ~~~~~C~~C~~~Fs-l~~RrHHCR~CG~ 63 (1731)
..+..|..|+.++. .......|..||.
T Consensus 10 ~~~~fC~~CG~~l~~~~~~~~~C~~Cg~ 37 (50)
T PF12773_consen 10 DDAKFCPHCGTPLPPPDQSKKICPNCGA 37 (50)
T ss_pred ccccCChhhcCChhhccCCCCCCcCCcC
Confidence 34668888888877 2334556777776
No 118
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=21.26 E-value=2e+02 Score=35.44 Aligned_cols=55 Identities=22% Similarity=0.168 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCCEEEEcccccHHHHHHHHHcCceeeccCChhHHHHHHHHhCCeEc
Q 000278 411 MAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCTGAQIV 466 (1731)
Q Consensus 411 ~~V~kI~~~~pnVVlv~k~Vs~~Al~~L~~~gI~~v~~Vk~~~LerIAr~TGA~Ii 466 (1731)
.+++.|+..+|.+|++..+.... .+.|.++||.++..|..-.+-+.+.-.|++++
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 35667888999999999888776 47899999999998876665566777787766
No 119
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=21.23 E-value=1.8e+02 Score=33.11 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=38.9
Q ss_pred HHHHHcCCCEEEEcccc-cHHHHHHHHHcCceeeccCC-------hhHHHHHHHHhCCe
Q 000278 414 AKIEAHHPDVLLVEKSV-SRFAQEYLLAKNVSLVLNTR-------RPLLERISRCTGAQ 464 (1731)
Q Consensus 414 ~kI~~~~pnVVlv~k~V-s~~Al~~L~~~gI~~v~~Vk-------~~~LerIAr~TGA~ 464 (1731)
++|++++|+|||..... .......+.+.+|.++.--. ...++.|+.++|..
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 47889999999998888 77777788999999885432 24678889988875
No 120
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=20.62 E-value=57 Score=32.73 Aligned_cols=25 Identities=28% Similarity=0.705 Sum_probs=18.8
Q ss_pred cccccccccCCCC---------cccccccccCce
Q 000278 40 RVCYECDSQFTVF---------NRRHHCRLCGRV 64 (1731)
Q Consensus 40 ~~C~~C~~~Fsl~---------~RrHHCR~CG~i 64 (1731)
..|..|+++..++ .-|.+||.|+.-
T Consensus 34 S~C~~C~~~L~~~~lIPi~S~l~lrGrCr~C~~~ 67 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLIPILSYLLLRGRCRYCGAP 67 (92)
T ss_pred CcCcCCCCcCcccccchHHHHHHhCCCCcccCCC
Confidence 3699999987544 358899999863
No 121
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=20.25 E-value=53 Score=40.00 Aligned_cols=63 Identities=24% Similarity=0.471 Sum_probs=36.9
Q ss_pred ccccccccccC--CC--------CcccccccccC------ceEeCCCCCCcccCCCCCCcc-cccCCcccccchhhHHHH
Q 000278 39 CRVCYECDSQF--TV--------FNRRHHCRLCG------RVFCGQCTSNSIPAPSVDPKT-AQEQWEKLRVCNYCFKQW 101 (1731)
Q Consensus 39 ~~~C~~C~~~F--sl--------~~RrHHCR~CG------~ifC~~Cs~~~v~l~~~~~~~-~~~~~~~vRVC~~C~~~l 101 (1731)
...|+.|+..= ++ -.|..||-.|+ ++-|..|-+.. .+....... .......+-+|..|..-+
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~-~l~y~~~e~~~~~~~~r~e~C~~C~~Yl 262 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESK-HLAYLSLEHDAEKAVLKAETCDSCQGYL 262 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCC-ceeeEeecCCCCCcceEEeeccccccch
Confidence 34799999852 22 24788999998 56899997642 221111000 001123455999998766
Q ss_pred h
Q 000278 102 Q 102 (1731)
Q Consensus 102 ~ 102 (1731)
.
T Consensus 263 K 263 (305)
T TIGR01562 263 K 263 (305)
T ss_pred h
Confidence 3
No 122
>PRK04023 DNA polymerase II large subunit; Validated
Probab=20.19 E-value=59 Score=44.73 Aligned_cols=28 Identities=29% Similarity=0.761 Sum_probs=21.1
Q ss_pred ccccccccccCCCCcccccccccCce-----EeCCCC
Q 000278 39 CRVCYECDSQFTVFNRRHHCRLCGRV-----FCGQCT 70 (1731)
Q Consensus 39 ~~~C~~C~~~Fsl~~RrHHCR~CG~i-----fC~~Cs 70 (1731)
...|+.|+... -...|..||.. ||..|.
T Consensus 626 ~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~CG 658 (1121)
T PRK04023 626 RRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRCG 658 (1121)
T ss_pred CccCCCCCCcC----CcccCCCCCCCCCcceeCcccc
Confidence 35899999974 22579999964 888884
Done!