Query 000278
Match_columns 1731
No_of_seqs 521 out of 3609
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 17:34:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000278.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_56-60//hhsearch_pdb/000278hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ybx_A Phosphatidylinositol-5- 1.0 1 1 576.9 21.8 270 1416-1701 55-394 (394)
2 2gk9_A Phosphatidylinositol-4- 1.0 1 1 568.8 13.2 258 1427-1702 58-392 (392)
3 3iyg_G T-complex protein 1 sub 1.0 1 1 481.6 32.1 305 245-565 78-407 (515)
4 3aq1_B Thermosome subunit; gro 1.0 1 1 465.9 24.6 304 245-564 42-369 (500)
5 1a6d_B Thermosome (beta subuni 1.0 1 1 464.8 29.9 302 245-564 90-416 (543)
6 3iyg_A T-complex protein 1 sub 1.0 1 1 464.8 32.1 304 245-565 79-414 (529)
7 1q3q_A Thermosome alpha subuni 1.0 1 1 462.8 30.1 303 245-564 92-418 (548)
8 1a6d_A Thermosome (alpha subun 1.0 1 1 461.4 28.5 302 245-564 91-415 (545)
9 3ko1_A Chaperonin; 9-fold symm 1.0 1 1 461.3 28.0 302 245-564 99-425 (553)
10 3p9d_F T-complex protein 1 sub 1.0 1 1 460.8 14.8 301 245-564 86-422 (546)
No 1
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=1.00 E-value=1 Score=576.87 Aligned_cols=270 Identities=27% Similarity=0.446 Sum_probs=236.6
Q ss_pred CCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCC-CCCCCCCCEEEEEECCCCEE
Q ss_conf 66757766755871489998651399999159999999988099968899962136557-77899752139974178389
Q 000278 1416 PLSYTKAFHPKVSFKDDGPLGQVKYSVTCYYARRFEALRKICCPSELDYVRSLSRCKKW-GAKGGKSNVFFAKTLDDRFI 1494 (1731)
Q Consensus 1416 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~p~~F~~LR~~~~~~~~~~i~SL~~~~~~-~~sgGKSgs~F~~T~D~rfi 1494 (1731)
+....+...-.+.|+.++.+ .+|+|++|+|.+|++||++||+++.+|+.||++|.+| .++||||||+||+|.|+|||
T Consensus 55 f~~~~k~~~~~~~f~~~~~p--~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfi 132 (394)
T 2ybx_A 55 FKAYSKIKVDNHLFNKENMP--SHFKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYI 132 (394)
T ss_dssp GGCEEEEEEEEESSSTTTSC--SEEEEEEESHHHHHHHHHHTTCCHHHHHHHHHSSCCEECC-----CCCEEECTTSSEE
T ss_pred HHHHEEEECCCCCCCCCCCC--CCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEE
T ss_conf 44331884046567865688--8749999788999999998297999999985478764247899866879981797289
Q ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEEEEECCCCCC-CCEEEEECCC
Q ss_conf 960599999999999999999998404999992201454278987412689812465689852145788-7203430677
Q 000278 1495 IKQVTKTELESFIKFAPEYFKYLSESISTGSPTCLAKILGIYQVTTKHLKGGRESKMDVLVMENLLFSR-SVTQLYDLKG 1573 (1731)
Q Consensus 1495 iKtis~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~i~~~~~~~g~~~k~~~iVMeNlf~~~-~i~~~yDLKG 1573 (1731)
||||++.|+++|+++||.||+||.++ +++|||+||||+|+|+++ |+ +.|||||+|||+++ .|+++|||||
T Consensus 133 IKti~~~E~~~l~~~lp~Y~~~~~~~---~~~TLL~k~~Gly~v~~~----~~--~~~fvVM~Nlf~~~~~i~~~yDLKG 203 (394)
T 2ybx_A 133 IKTITSEDVAEMHNILKKYHQYIVEC---HGITLLPQFLGMYRLNVD----GV--EIYVIVTRNVFSHRLSVYRKYDLKG 203 (394)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHT---TTCCSSCCEEEEEEEEET----TE--EEEEEEEECSSCSSSCCSEEEEECC
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHCEEEEEEEC----CE--EEEEEEEECCCCCCCCEEEEEEECC
T ss_conf 99619999999999999999999840---898676653178999989----90--7999999367788764201002056
Q ss_pred CCCCCCCCCCC--CCCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC---------
Q ss_conf 64445688999--9863225143764189997363938899999999830101235971025103887447---------
Q 000278 1574 SSRSRYNPDSS--GSNKVLLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTAFLASIDVMDYSLLVGVDEE--------- 1642 (1731)
Q Consensus 1574 S~~~R~~~~~~--~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~nimDYSLLvGi~~~--------- 1642 (1731)
|+++|++.+.+ +...||||+||++.. .+|+|+++.|+.|.+||++||.||+++||||||||||||..
T Consensus 204 S~~~R~~~~~~~~~~~~~LkD~df~~~~--~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGIh~~~~~~~~~~~ 281 (394)
T 2ybx_A 204 STVAREASDKEKAKELPTLKDNDFINEG--QKIYIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGIHDVERAEQEEVE 281 (394)
T ss_dssp SSSCCCCCHHHHTSSSCEECHHHHHHTT--CCCCCCHHHHHHHHHHHHHHHHHHHHTTEESCEEEEEEEEHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCCEECCCCHHHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHCC
T ss_conf 4457766753445676541111367469--81997899999999999999999987787664048777315543200002
Q ss_pred ---------------------------------------------------------CCEEEEEEEEHHHCCCHHHHHHH
Q ss_conf ---------------------------------------------------------62688764512311420246667
Q 000278 1643 ---------------------------------------------------------NHQLVLGIIDFMRQYTWDKHLET 1665 (1731)
Q Consensus 1643 ---------------------------------------------------------~~~l~~GIID~l~~yt~~KklE~ 1665 (1731)
+.+||+|||||||+|||+||+||
T Consensus 282 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyyiGIIDiLq~Y~~~KklE~ 361 (394)
T 2ybx_A 282 CEENDGEEEGESDGTHPVGTPPDSPGNTLNSSPPLAPGEFDPNIDVYGIKCHENSPRKEVYFMAIIXILTHYDAKKKAAH 361 (394)
T ss_dssp C--------------------------------CCCTTCCCTTTSTTEEECCTTCSSCEEEEEEEECCCEESCC------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHH
T ss_conf 44555543344565544578755534444322223655456444323434555777743799999986310784089999
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 654402249999999741393789999999998613
Q 000278 1666 WVKASGILGGPKNASPTVISPKQYKKRFRKAMTTYF 1701 (1731)
Q Consensus 1666 ~~K~~~~~~g~~~~~~Tvv~P~~Y~~RF~~~m~~~f 1701 (1731)
|+|+. ++|. +..||+|+|++|++||++||.++|
T Consensus 362 ~~Ks~--~~~~-~~~iS~V~P~~Y~~RF~~fm~~if 394 (394)
T 2ybx_A 362 AAKTV--KHGA-GAEISTVNPEQYSKRFLDFIGHIL 394 (394)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHH--CCCC-CCCCCEECHHHHHHHHHHHHHHHC
T ss_conf 99986--1589-999856998999999999999869
No 2
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=568.85 Aligned_cols=258 Identities=27% Similarity=0.464 Sum_probs=230.4
Q ss_pred EEECCCCCCCCEEEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHH
Q ss_conf 87148999865139999915999999998809996889996213655777899752139974178389960599999999
Q 000278 1427 VSFKDDGPLGQVKYSVTCYYARRFEALRKICCPSELDYVRSLSRCKKWGAKGGKSNVFFAKTLDDRFIIKQVTKTELESF 1506 (1731)
Q Consensus 1427 ~~f~~~~~~~~~~~~~~~y~p~~F~~LR~~~~~~~~~~i~SL~~~~~~~~sgGKSgs~F~~T~D~rfiiKtis~~E~~~f 1506 (1731)
+.|+.++.+ .+|.|++|+|.+|++||++||+++.+|+.||++|.+|. ++|||| +||+|.|+|||||||++.|+++|
T Consensus 58 ~~f~~e~~p--~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~-s~GKSG-~F~~T~D~rfiIKti~~~E~~~l 133 (392)
T 2gk9_A 58 HLFHRENLP--SHFKFKEYCPQVFRNLRDRFGIDDQDYLVSLTRNPPSE-SEGSDG-RFLISYDRTLVIKEVSSEDIADM 133 (392)
T ss_dssp SSSCCSSSC--SSBEEEEESHHHHHHHHHTTTCCHHHHHHHHHSSCCCC-CC------CCCCTTSSEEEEECCHHHHHHH
T ss_pred CCCCCCCCC--CCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCC-CCCCCC-EEEECCCCCEEEEEECHHHHHHH
T ss_conf 557866688--86499997979999999980989899998743787455-798762-37986998689996099999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEEEEECCCCCC-CCEEEEECCCCCCCCCCCCCCC
Q ss_conf 999999999998404999992201454278987412689812465689852145788-7203430677644456889999
Q 000278 1507 IKFAPEYFKYLSESISTGSPTCLAKILGIYQVTTKHLKGGRESKMDVLVMENLLFSR-SVTQLYDLKGSSRSRYNPDSSG 1585 (1731)
Q Consensus 1507 ~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~i~~~~~~~g~~~k~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~~ 1585 (1731)
+++||.||+||.++ +++|||+||||+|+|+++ |++ .|||||+|||+++ .|+++||||||+++|++.+.+.
T Consensus 134 ~~~lp~Y~~~~~~~---~~~TLL~k~~Gly~v~~~----~~~--~~~vVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~ 204 (392)
T 2gk9_A 134 HSNLSNYHQYIVKC---HGNTLLPQFLGMYRVSVD----NED--SYMLVMRNMFSHRLPVHRKYDLKGSLVSREASDKEK 204 (392)
T ss_dssp HHHHHHHHHHHHHT---TSCSSSCCEEEEEECCBS----SCC--CEEEEEECSSCSSSCCSCCCEECC------------
T ss_pred HHHHHHHHHHHHHH---CCCCCHHHHCEEEEEEEC----CEE--EEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 99999999999840---798655653068999989----907--999999367788764103445056545776675223
Q ss_pred --CCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC--------------------
Q ss_conf --8632251437641899973639388999999998301012359710251038874476--------------------
Q 000278 1586 --SNKVLLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTAFLASIDVMDYSLLVGVDEEN-------------------- 1643 (1731)
Q Consensus 1586 --~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~nimDYSLLvGi~~~~-------------------- 1643 (1731)
...||||+||++.. .+|+|+++.|..|.+||++||.||+++||||||||||||...
T Consensus 205 ~~~~~~LkD~df~~~~--~~i~l~~~~k~~l~~~l~~D~~FL~~~~iMDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~~ 282 (392)
T 2gk9_A 205 VKELPTLRDMDFLNKN--QKVYIGEEEKKIFLEKLKRDVEFLVQLKIMDYSLLLGIHDIIRGSEPEEEAPVREDESEVDG 282 (392)
T ss_dssp -----CCBTTC--CCC--CCCCC----CHHHHHHHHHHHHHHHHTTCCCCCEECCCBCC---------------------
T ss_pred CCCCCEECCCCHHHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 5666611131156259--86987899999999999999999987687663058766315543211222234455554555
Q ss_pred ------------------------------------------------------CEEEEEEEEHHHCCCHHHHHHHHHHH
Q ss_conf ------------------------------------------------------26887645123114202466676544
Q 000278 1644 ------------------------------------------------------HQLVLGIIDFMRQYTWDKHLETWVKA 1669 (1731)
Q Consensus 1644 ------------------------------------------------------~~l~~GIID~l~~yt~~KklE~~~K~ 1669 (1731)
.+||+|||||||+|||+||+|||+|+
T Consensus 283 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyylGIIDiLq~Y~~~KklE~~~Ks 362 (392)
T 2gk9_A 283 DCSLTGPPALVGSYGTSPEGIGGYIHSHRPLGPGEFESFIDVYAIRSAEGAPQKEVYFMGLIDILTQYDAKKKAAHAAKT 362 (392)
T ss_dssp ------------------------------------------------------CBCCCEECCCC---------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHH
T ss_conf 33234564322456788545333343222236665654443234345556777527999997740008700899999998
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 022499999997413937899999999986134
Q 000278 1670 SGILGGPKNASPTVISPKQYKKRFRKAMTTYFL 1702 (1731)
Q Consensus 1670 ~~~~~g~~~~~~Tvv~P~~Y~~RF~~~m~~~f~ 1702 (1731)
. ++|+ +..||+|+|++|++||++||.+||.
T Consensus 363 ~--~~~~-~~~iS~v~P~~Y~~RF~~fm~~~~~ 392 (392)
T 2gk9_A 363 V--KHGA-GAEISTVHPEQYAKRFLDFITNIFA 392 (392)
T ss_dssp ---------------CHHHHHHHHHHHTC----
T ss_pred H--CCCC-CCCCCEECHHHHHHHHHHHHHHHHC
T ss_conf 6--1578-9997468989999999999999609
No 3
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=481.61 Aligned_cols=305 Identities=24% Similarity=0.401 Sum_probs=285.4
Q ss_pred CCCCCCCCCCEEEHEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-C----------------CH
Q ss_conf 668863224600011178999589779805795999999999999999987314768789-9----------------11
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED-D----------------EE 307 (1731)
Q Consensus 245 evGDGTt~~~s~viLa~ell~~a~~li~~g~~~~~i~~g~~~al~~qLl~~~~i~~~~~~-~----------------~~ 307 (1731)
++||||| |+|+||++|+++++.+++.|+||..|++||.+|+..++..+++++++.+. + ..
T Consensus 78 e~GDGTT---tvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~va~tsl~sK~i~ 154 (515)
T 3iyg_G 78 EVGDGTT---SVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITTKVIS 154 (515)
T ss_pred HHCCCHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf 6277722---4999999999999999987998899999999999999999998504568888999999999871487525
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEEEECCCCC
Q ss_conf 56888999999999750768889999899994899981699820028999789954204589923632984999224121
Q 000278 308 SWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALE 387 (1731)
Q Consensus 308 ~w~~~l~~L~~~A~~~V~~d~~~~~~mDi~~~VkIkkI~GGs~~DS~lV~GvV~~Kn~a~k~M~~~i~nprILll~~~Le 387 (1731)
.|.+.+++++++|+..|.++......+|+.+||+|+|++||++.||++|+|++|+|++.|++|+++++|||||+++|+||
T Consensus 155 ~~~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le 234 (515)
T 3iyg_G 155 RWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLE 234 (515)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCC
T ss_conf 57999999999999842335688854564230589983699801016884179827878988861444107999815554
Q ss_pred CCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHH
Q ss_conf 00124-------68667999999999999999999997299989983563199999999869602026894679999999
Q 000278 388 YQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRC 460 (1731)
Q Consensus 388 ~~r~~-------~~~~sle~il~qE~e~L~~~V~kI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LerIAr~ 460 (1731)
|++.+ +...++++++++|++|++++|++|++.||+|||++++|+++|++||.++||++++++++.+|+|||++
T Consensus 235 ~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~I~av~~~~k~~leria~~ 314 (515)
T 3iyg_G 235 YKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARA 314 (515)
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHH
T ss_conf 44234674289678999999999999999999999994799899978866789999998789566666788999999999
Q ss_pred HCCEECCCCCCCCCCCCEE-EEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 4995734556899998503-349999997035444577885430179999758999702999548999899999999999
Q 000278 461 TGAQIVPSIDHISSPKLGY-CEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQY 539 (1731)
Q Consensus 461 TGA~Iissid~L~~~~LG~-C~~f~v~~~~~e~~~~~~~~~~~~ktli~feGc~~~~gcTIlLRG~s~~~L~evKr~l~d 539 (1731)
|||++++++++++...||+ |+.|+++++++ ++++||+||+++.+|||+|||+|+.+|+|+||+++|
T Consensus 315 tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~-------------~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~i~D 381 (515)
T 3iyg_G 315 CGARIVSRPEELREEDVGTGAGLLEIKKIGD-------------EYFTFITECKDPKACTILLRGASKEILSEVERNLQD 381 (515)
T ss_pred HCCEEECCCCCCCHHHCCCCCCEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 5992642102367666287562899999878-------------169999578888768999848988999999999999
Q ss_pred HHHHHHHHHHCCEEECCCCCCCCCCC
Q ss_conf 99999998851927607973477999
Q 000278 540 GIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 540 ai~v~~~l~lE~~~l~ggGa~~~~~~ 565 (1731)
|++++++++.+.++||||||+|+++.
T Consensus 382 al~~~r~~~~~~~ivpGGGa~e~~~~ 407 (515)
T 3iyg_G 382 AMQVCRNVLLDPQLVPGGGASEMAVA 407 (515)
T ss_pred HHHHHHHHHHCCCEEECCCHHHHHHH
T ss_conf 99999999628968937889999999
No 4
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=1.00 E-value=1 Score=465.88 Aligned_cols=304 Identities=20% Similarity=0.311 Sum_probs=283.3
Q ss_pred CCCCCCCCCCEEEHEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CC----------------H
Q ss_conf 668863224600011178999589779805795999999999999999987314768789-91----------------1
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED-DE----------------E 307 (1731)
Q Consensus 245 evGDGTt~~~s~viLa~ell~~a~~li~~g~~~~~i~~g~~~al~~qLl~~~~i~~~~~~-~~----------------~ 307 (1731)
++||||| |+++||++|++++..+++.|+||..|++||.+|+..++..+++++++... +. .
T Consensus 42 e~GDGTT---tvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~sKi~~ 118 (500)
T 3aq1_B 42 EVGDGTT---TAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAE 118 (500)
T ss_dssp -CCHHHH---HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHTTCCSSSTT
T ss_pred HHCCCHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 5179857---8999999999999999987999899999999999999999998268888876789999999986231135
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEEEECCCCC
Q ss_conf 56888999999999750768889999899994899981699820028999789954204589923632984999224121
Q 000278 308 SWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALE 387 (1731)
Q Consensus 308 ~w~~~l~~L~~~A~~~V~~d~~~~~~mDi~~~VkIkkI~GGs~~DS~lV~GvV~~Kn~a~k~M~~~i~nprILll~~~Le 387 (1731)
.|.+.|++|+++|+..|.++......+|+.++|+|+|++||+..||++|+|++|+|++.|+.|+++++|||||+++|+||
T Consensus 119 ~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~i~n~kIll~~~~Le 198 (500)
T 3aq1_B 119 AYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVE 198 (500)
T ss_dssp SSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBC
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 55789999999999996133468744451122799983589800117882269940578899854435987999937766
Q ss_pred CCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHH
Q ss_conf 00124-------68667999999999999999999997299989983563199999999869602026894679999999
Q 000278 388 YQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRC 460 (1731)
Q Consensus 388 ~~r~~-------~~~~sle~il~qE~e~L~~~V~kI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LerIAr~ 460 (1731)
|++.+ +...+++.++++|++|++.++++|++.|+||||++++|++.|++||.++||++++++++.+|+|||++
T Consensus 199 ~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~ 278 (500)
T 3aq1_B 199 FRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKV 278 (500)
T ss_dssp C-------------------------CHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHH
T ss_conf 66544632476489999999999999999999999997493999987776779999998789899972799999999998
Q ss_pred HCCEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 49957345568999985033499999970354445778854301799997589997029995489998999999999999
Q 000278 461 TGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQYG 540 (1731)
Q Consensus 461 TGA~Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktli~feGc~~~~gcTIlLRG~s~~~L~evKr~l~da 540 (1731)
|||++++++++++...||+|+.|++++++. ++++||+||+++.+|||+|||+|+.+|+|+||+++||
T Consensus 279 tGa~iis~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~Da 345 (500)
T 3aq1_B 279 TGATIIQDLDQITTEDVGTAGLVEEKEVRG-------------GKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDA 345 (500)
T ss_dssp HCCCCBSCTTCCCSTTCEEEEEEEEEECSS-------------SEEEEEEEETTCCCEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------EEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 499574560118986788760899998457-------------6899997788875699993589677999999999989
Q ss_pred HHHHHHHHHCCEEECCCCCCCCCC
Q ss_conf 999999885192760797347799
Q 000278 541 IFAAYHLAVETSFLADEGASLPEL 564 (1731)
Q Consensus 541 i~v~~~l~lE~~~l~ggGa~~~~~ 564 (1731)
++++++++.|+++||||||+|.++
T Consensus 346 l~~~r~~~~~~~iVpGGGa~e~~~ 369 (500)
T 3aq1_B 346 LHVVGVVIEDGKVVVGGGSSEVEL 369 (500)
T ss_dssp HHHHHHHHHHSEEEETTTHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 999999997888788872999999
No 5
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=1.00 E-value=1 Score=464.84 Aligned_cols=302 Identities=20% Similarity=0.306 Sum_probs=284.2
Q ss_pred CCCCCCCCCCEEEHEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-C----------------CH
Q ss_conf 668863224600011178999589779805795999999999999999987314768789-9----------------11
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED-D----------------EE 307 (1731)
Q Consensus 245 evGDGTt~~~s~viLa~ell~~a~~li~~g~~~~~i~~g~~~al~~qLl~~~~i~~~~~~-~----------------~~ 307 (1731)
++||||| |+++||++|+++++.++++|+||..|++||.+|+..++..+++++++... + ..
T Consensus 90 e~GDGTT---tvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~l~~va~tsl~sKi~~ 166 (543)
T 1a6d_B 90 FVGDGTT---TAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSAS 166 (543)
T ss_dssp CCTTHHH---HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTHHHHHHHHHHHHHTTSGGG
T ss_pred EECCCHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 8788845---8999999999999999977999899999999999999999998268889987799999999985254244
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEEEECCCC
Q ss_conf 568889999999997507688899-9989999489998169982002899978995420458992363298499922412
Q 000278 308 SWLEIITSLSWEAATLLKPDMSKG-GGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGAL 386 (1731)
Q Consensus 308 ~w~~~l~~L~~~A~~~V~~d~~~~-~~mDi~~~VkIkkI~GGs~~DS~lV~GvV~~Kn~a~k~M~~~i~nprILll~~~L 386 (1731)
.|.+.|++|+++|+..|.++. .| ..+|+ ++|+|+|++||+..||++|+|++|+|++.|+.||++++||||||++++|
T Consensus 167 ~~~~~i~~livdAv~~v~~~~-~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~L 244 (543)
T 1a6d_B 167 VAKDKLAEISYEAVKSVAELR-DGKYYVDF-DNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPL 244 (543)
T ss_dssp GGHHHHHHHHHHHHHHHEEEC-SSSEEECG-GGEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCB
T ss_pred CCHHHHHHHHHHHHHHHCCCC-CCCCCCCC-CEEEEEEECCCCCCCEEEECCEEEECCCCCCCCCCEECCCEEEEEECCC
T ss_conf 547799999999999845333-68744334-4489998368981222687348983177888875331387699992455
Q ss_pred CCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHH
Q ss_conf 100124-------6866799999999999999999999729998998356319999999986960202689467999999
Q 000278 387 EYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISR 459 (1731)
Q Consensus 387 e~~r~~-------~~~~sle~il~qE~e~L~~~V~kI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LerIAr 459 (1731)
||++.+ +...+++.++++|++|++.++++|++.|+||||++++|+++|++||.++||++++++++.+|+|||+
T Consensus 245 e~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~k~~le~ia~ 324 (543)
T 1a6d_B 245 EIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAK 324 (543)
T ss_dssp SCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHH
T ss_pred CCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHH
T ss_conf 64434577438968899999999999999999999999729989998888688999999878966864689999999999
Q ss_pred HHCCEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 94995734556899998503349999997035444577885430179999758999702999548999899999999999
Q 000278 460 CTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQY 539 (1731)
Q Consensus 460 ~TGA~Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktli~feGc~~~~gcTIlLRG~s~~~L~evKr~l~d 539 (1731)
+|||++++++++++...||+|+.|++++++. ++|+||+||+++.+|||+|||+|+.+|+|+||+++|
T Consensus 325 ~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~D 391 (543)
T 1a6d_B 325 ATGASIVSTIDEISSSDLGTAERVEQVKVGE-------------DYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITD 391 (543)
T ss_dssp HHTCCEESCGGGCCGGGCEEEEEEEEEEETT-------------EEEEEEEEESSSSCEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHCCCEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 8299265551449987788763899999668-------------149999668887559999657977799999999999
Q ss_pred HHHHHHHHHHCCEEECCCCCCCCCC
Q ss_conf 9999999885192760797347799
Q 000278 540 GIFAAYHLAVETSFLADEGASLPEL 564 (1731)
Q Consensus 540 ai~v~~~l~lE~~~l~ggGa~~~~~ 564 (1731)
|++++++++.|+++||||||+|.++
T Consensus 392 Al~~~r~a~~~~~ivpGGGa~e~~~ 416 (543)
T 1a6d_B 392 SLHVVASALEDGAYAAGGGATAAEI 416 (543)
T ss_dssp HHHHHHHHHHHCEEEETTTHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 9999999997888167864999999
No 6
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=464.81 Aligned_cols=304 Identities=17% Similarity=0.233 Sum_probs=280.6
Q ss_pred CCCCCCCCCCEEEHEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC-CCCCCCC-CC----------------
Q ss_conf 66886322460001117899958977980579599999999999999998731-4768789-91----------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVEN-LSIGDED-DE---------------- 306 (1731)
Q Consensus 245 evGDGTt~~~s~viLa~ell~~a~~li~~g~~~~~i~~g~~~al~~qLl~~~~-i~~~~~~-~~---------------- 306 (1731)
++||||| |+++||++|+++++.++++|+||..|++||.+|+..++..+++ ++++.+. +.
T Consensus 79 e~GDGTT---tvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~l~~va~tsl~sK~~ 155 (529)
T 3iyg_A 79 EVGDGTT---SVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVI 155 (529)
T ss_pred HHCCCHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 5377720---2999999999999999987999999999999999999999987426078889989999999998566755
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEEEECCC
Q ss_conf 1568889999999997507688899-998999948999816998200289997899542045899236329849992241
Q 000278 307 ESWLEIITSLSWEAATLLKPDMSKG-GGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGA 385 (1731)
Q Consensus 307 ~~w~~~l~~L~~~A~~~V~~d~~~~-~~mDi~~~VkIkkI~GGs~~DS~lV~GvV~~Kn~a~k~M~~~i~nprILll~~~ 385 (1731)
..|.+.|++|+++|+..|++....| ..+|+ ++|+|++++||++.||++|+|++|+|++.|+.||++++||||++++|+
T Consensus 156 ~~~~~~i~~livdAv~~V~~~~~~g~~~~dv-~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIlll~~~ 234 (529)
T 3iyg_A 156 GINGDFFANLVVDAVLAIKYTDIRGQPRYPV-NSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS 234 (529)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEECCC
T ss_conf 3207899999999999975124478766654-417999955988554389961687458643568751688669996277
Q ss_pred CCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHHHHH
Q ss_conf 2100124-------686679999999999999999999972999899835631999999998696020268946799999
Q 000278 386 LEYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERIS 458 (1731)
Q Consensus 386 Le~~r~~-------~~~~sle~il~qE~e~L~~~V~kI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LerIA 458 (1731)
|+|++.+ +...+++.+.++|+++++.++++|++.|+||||++++|+++|++||.++||++++++++.+|+|||
T Consensus 235 le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria 314 (529)
T 3iyg_A 235 LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIA 314 (529)
T ss_pred CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEECCCCHHHHHHHH
T ss_conf 65453567854996899999999999999999999999954998999878877899999998698036347988899999
Q ss_pred HHHCCEECCCCCCCC------CCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCHHHHHH
Q ss_conf 994995734556899------99850334999999703544457788543017999975899970299954899989999
Q 000278 459 RCTGAQIVPSIDHIS------SPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKK 532 (1731)
Q Consensus 459 r~TGA~Iissid~L~------~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktli~feGc~~~~gcTIlLRG~s~~~L~e 532 (1731)
++|||+++++++.+. ..+||+|+.|++++++. ++|+||+||+++.+|||+|||+|+.+|+|
T Consensus 315 ~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~t~~~l~E 381 (529)
T 3iyg_A 315 KASGATVLSTLANLEGEETFEASMLGQAEEVVQERICD-------------DELILIKNTKARTSASVILRGANDFMCDE 381 (529)
T ss_pred HHHCCEEECCHHCCCCHHCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCHHHHHHH
T ss_conf 98599566140104531005763376543899998679-------------53999975799865899977862779999
Q ss_pred HHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCC
Q ss_conf 999999999999998851927607973477999
Q 000278 533 VKHVVQYGIFAAYHLAVETSFLADEGASLPELP 565 (1731)
Q Consensus 533 vKr~l~dai~v~~~l~lE~~~l~ggGa~~~~~~ 565 (1731)
+||+++||++++++++.++++||||||+|+++.
T Consensus 382 ~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~ls 414 (529)
T 3iyg_A 382 MERSLHDALCVVKRVLESKSVVPGGGAVEAALS 414 (529)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHH
T ss_conf 999999999999999638908847867999999
No 7
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=1.00 E-value=1 Score=462.83 Aligned_cols=303 Identities=24% Similarity=0.360 Sum_probs=284.4
Q ss_pred CCCCCCCCCCEEEHEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-C----------------CH
Q ss_conf 668863224600011178999589779805795999999999999999987314768789-9----------------11
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED-D----------------EE 307 (1731)
Q Consensus 245 evGDGTt~~~s~viLa~ell~~a~~li~~g~~~~~i~~g~~~al~~qLl~~~~i~~~~~~-~----------------~~ 307 (1731)
++||||| |+++||++|+++++.++++|+||..|++||.+|+..++..+++++++... + ..
T Consensus 92 e~GDGTT---tvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~sKi~~ 168 (548)
T 1q3q_A 92 EAGDGTT---TAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAE 168 (548)
T ss_dssp HTSSCHH---HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHSCSSTTG
T ss_pred EECCCHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9878823---8999999999999999987998899999999999999999998458888877899999999875030024
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEEEECCCCC
Q ss_conf 56888999999999750768889999899994899981699820028999789954204589923632984999224121
Q 000278 308 SWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALE 387 (1731)
Q Consensus 308 ~w~~~l~~L~~~A~~~V~~d~~~~~~mDi~~~VkIkkI~GGs~~DS~lV~GvV~~Kn~a~k~M~~~i~nprILll~~~Le 387 (1731)
.|.+.|++|+++|+..|.++......+|+ ++|+|+|++||+..||++|+|++|+|++.|+.||++++||||||++++||
T Consensus 169 ~~~~~i~~livdAv~~V~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le 247 (548)
T 1q3q_A 169 SHKELLAKLAVEAVKQVAEKKDGKYVVDL-DNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALE 247 (548)
T ss_dssp GGHHHHHHHHHHHHHHHCEESSSSEECCG-GGEEEEEEEBSCGGGCEEESSEEESCCCSSTTSCSEESSEEEEEECSCBS
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCC-CEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCEECCCEEEEEECCCC
T ss_conf 55579999999999984434578754557-73899994489830238971089841577899856514887999926767
Q ss_pred CCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHH
Q ss_conf 00124-------68667999999999999999999997299989983563199999999869602026894679999999
Q 000278 388 YQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRC 460 (1731)
Q Consensus 388 ~~r~~-------~~~~sle~il~qE~e~L~~~V~kI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LerIAr~ 460 (1731)
|++.+ +...+++.++++|++|++.++++|++.|++|||++++|+++|++||.++||++++++++.+|+|||++
T Consensus 248 ~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~ 327 (548)
T 1q3q_A 248 VKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKA 327 (548)
T ss_dssp CCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHH
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHH
T ss_conf 54346784399688999999999999999999999998596999986785889999999879578733799999999998
Q ss_pred HCCEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 49957345568999985033499999970354445778854301799997589997029995489998999999999999
Q 000278 461 TGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQYG 540 (1731)
Q Consensus 461 TGA~Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktli~feGc~~~~gcTIlLRG~s~~~L~evKr~l~da 540 (1731)
|||++++++++++...||+|+.|++++++. ++|+||+||+++..|||+|||+|+.+|+|+||+++||
T Consensus 328 tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~te~~l~E~er~l~DA 394 (548)
T 1q3q_A 328 TGAKIVTNVKDLTPEDLGYAEVVEERKLAG-------------ENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDA 394 (548)
T ss_dssp HCCCCBSSGGGCCGGGCEEESEEEEEEETT-------------EEEEEEECCSSCSSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 599475552549987788763899999668-------------3399996589997699997789767899999999979
Q ss_pred HHHHHHHHHCCEEECCCCCCCCCC
Q ss_conf 999999885192760797347799
Q 000278 541 IFAAYHLAVETSFLADEGASLPEL 564 (1731)
Q Consensus 541 i~v~~~l~lE~~~l~ggGa~~~~~ 564 (1731)
++++++++.|+++||||||+|.++
T Consensus 395 l~~~r~a~~~~~ivpGGGa~e~~~ 418 (548)
T 1q3q_A 395 VKVVKDVMEDGAVLPAGGAPEIEL 418 (548)
T ss_dssp HHHHHHHHHSCEEEECTTHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 999999997788056875999999
No 8
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=1.00 E-value=1 Score=461.45 Aligned_cols=302 Identities=21% Similarity=0.324 Sum_probs=284.2
Q ss_pred CCCCCCCCCCEEEHEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------HH
Q ss_conf 66886322460001117899958977980579599999999999999998731476878991----------------15
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDEDDE----------------ES 308 (1731)
Q Consensus 245 evGDGTt~~~s~viLa~ell~~a~~li~~g~~~~~i~~g~~~al~~qLl~~~~i~~~~~~~~----------------~~ 308 (1731)
++||||| |+++||++|++++..+++.|+||..|++||.+|+..++..+++++++ ..+. ..
T Consensus 91 e~GDGTT---tvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~-~~~~~~l~~va~tsl~sKi~~~ 166 (545)
T 1a6d_A 91 AVGDGTT---TAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK-STDDATLRKIALTALSGKNTGL 166 (545)
T ss_dssp CSTTHHH---HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEE-CCCHHHHHHHHHHHTTTSSCCS
T ss_pred EECCCHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCCCC
T ss_conf 8878804---89999999999999999879988999999999999999999986278-9999999999999873540345
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEEEECCCCCC
Q ss_conf 68889999999997507688899998999948999816998200289997899542045899236329849992241210
Q 000278 309 WLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGALEY 388 (1731)
Q Consensus 309 w~~~l~~L~~~A~~~V~~d~~~~~~mDi~~~VkIkkI~GGs~~DS~lV~GvV~~Kn~a~k~M~~~i~nprILll~~~Le~ 388 (1731)
|.+.|++|+++|+..|.++......+|+ ++|+|+|++||+..||++|+|++|+|++.|+.||++++||||||++++|||
T Consensus 167 ~~~~i~~livdAv~~v~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~ 245 (545)
T 1a6d_A 167 SNDFLADLVVKAVNAVAEVRDGKTIVDT-ANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEI 245 (545)
T ss_dssp THHHHHHHHHHHHHHHCEESSSSEECCG-GGEEEEECCCSCSTTCEEESEEEESCCCSCTTSCSEEEEEEEEEECSCBSC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCC-CEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCEECCCEEEEEECCCCC
T ss_conf 4779999999999997233678753434-317999955897200278840798225788998564058879999167775
Q ss_pred CCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHH
Q ss_conf 0124-------686679999999999999999999972999899835631999999998696020268946799999994
Q 000278 389 QRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISRCT 461 (1731)
Q Consensus 389 ~r~~-------~~~~sle~il~qE~e~L~~~V~kI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LerIAr~T 461 (1731)
++.+ +...+++.++++|++|++.++++|++.|++|||++++|++.|++||.++||++++++++.+|+|||++|
T Consensus 246 ~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~t 325 (545)
T 1a6d_A 246 KKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKAT 325 (545)
T ss_dssp CCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHTCEEECSCCHHHHHHHHHHH
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHH
T ss_conf 53467843996789999999999999999999999972998999878866899999998792675248999999999985
Q ss_pred CCEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 99573455689999850334999999703544457788543017999975899970299954899989999999999999
Q 000278 462 GAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQYGI 541 (1731)
Q Consensus 462 GA~Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktli~feGc~~~~gcTIlLRG~s~~~L~evKr~l~dai 541 (1731)
||++++++++++...||+|+.|++++++. ++++||+||+++..|||+|||+|+.+|+|+||+++||+
T Consensus 326 Ga~iis~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~te~~l~E~kr~l~DAl 392 (545)
T 1a6d_A 326 GAKIVTDLDDLTPSVLGEAETVEERKIGD-------------DRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAI 392 (545)
T ss_dssp CCCEESSGGGCCGGGCEEEEEEEEEEETT-------------EEEEEEEEESCSSCEEEEECCSSSTTHHHHHHHHHHHH
T ss_pred CCEEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 99254660329987778862899999558-------------34999966888745899976898899999999999999
Q ss_pred HHHHHHHHCCEEECCCCCCCCCC
Q ss_conf 99999885192760797347799
Q 000278 542 FAAYHLAVETSFLADEGASLPEL 564 (1731)
Q Consensus 542 ~v~~~l~lE~~~l~ggGa~~~~~ 564 (1731)
+++++++.|+++||||||+|.++
T Consensus 393 ~~~r~a~~~g~iVpGGGa~e~~~ 415 (545)
T 1a6d_A 393 RVVAITKEDGKFLWGGGAVEAEL 415 (545)
T ss_dssp HHHHHHHHHCEEEETTTHHHHHH
T ss_pred HHHHHHHHCCCEEECCCHHHHHH
T ss_conf 99999986898886857999999
No 9
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=1.00 E-value=1 Score=461.26 Aligned_cols=302 Identities=23% Similarity=0.312 Sum_probs=282.7
Q ss_pred CCCCCCCCCCEEEHEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CC----------------H
Q ss_conf 668863224600011178999589779805795999999999999999987314768789-91----------------1
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDED-DE----------------E 307 (1731)
Q Consensus 245 evGDGTt~~~s~viLa~ell~~a~~li~~g~~~~~i~~g~~~al~~qLl~~~~i~~~~~~-~~----------------~ 307 (1731)
++||||| |+++||++|++++..+++.|+||..|++||.+|+..++..+++++++... +. .
T Consensus 99 e~GDGTT---tvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~e~L~~vA~tsl~sK~~~ 175 (553)
T 3ko1_A 99 ETADGTK---TAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSSKAVA 175 (553)
T ss_dssp SSSTTHH---HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTTCHHHHHHHHHHHHTTSSCC
T ss_pred CCCCCCE---EEEEEHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0258733---6999627788769999746899617751216899999999998468877784999999998775687650
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEEEECCCC
Q ss_conf 568889999999997507688899-9989999489998169982002899978995420458992363298499922412
Q 000278 308 SWLEIITSLSWEAATLLKPDMSKG-GGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGAL 386 (1731)
Q Consensus 308 ~w~~~l~~L~~~A~~~V~~d~~~~-~~mDi~~~VkIkkI~GGs~~DS~lV~GvV~~Kn~a~k~M~~~i~nprILll~~~L 386 (1731)
.|.+.|++|+++|+..|.++. .| ..+|+ ++|+|++++||+..||++|+|++|+|++.|+.|+++++|||||+++|+|
T Consensus 176 ~~~~~i~~livdAv~~V~~~~-~G~~~~dl-~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~d~~L 253 (553)
T 3ko1_A 176 GAREYIADIVVKAVTQVAELR-GDKWYVDL-DNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASL 253 (553)
T ss_dssp TTHHHHHHHHHHHHHHHCCCT-TSSCCCCG-GGEEEEECCCSCGGGCEEESEEEECSCBSCTTSCSCCBSCEEEEECSCB
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCEEEEC-HHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 189999999999999999962-87169841-2678898738751113145777730001379986320024588863753
Q ss_pred CCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHH
Q ss_conf 100124-------6866799999999999999999999729998998356319999999986960202689467999999
Q 000278 387 EYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHHPDVLLVEKSVSRFAQEYLLAKNVSLVLNTRRPLLERISR 459 (1731)
Q Consensus 387 e~~r~~-------~~~~sle~il~qE~e~L~~~V~kI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LerIAr 459 (1731)
+|++.+ +...++++++++|+++++.++++|++.|+||||++++|++.|++||.++||++++++++.+|+|||+
T Consensus 254 e~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~gI~~v~~v~k~~leria~ 333 (553)
T 3ko1_A 254 EVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLAR 333 (553)
T ss_dssp SCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHHTCEEECCCCHHHHHHHHT
T ss_pred CCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 34676667268708989999999989999999999998625648996157489999988754415322451524899877
Q ss_pred HHCCEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 94995734556899998503349999997035444577885430179999758999702999548999899999999999
Q 000278 460 CTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGDELKKVKHVVQY 539 (1731)
Q Consensus 460 ~TGA~Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktli~feGc~~~~gcTIlLRG~s~~~L~evKr~l~d 539 (1731)
+|||++++++++++...||+|+.|++++++. ++++||+||+++.+|||+|||+|+.+|+|+||+++|
T Consensus 334 ~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~-------------d~~~~i~g~~~~~~~TI~lrG~te~~l~E~er~l~D 400 (553)
T 3ko1_A 334 ATGGRVVSNIDEISEQDLGYASLIEERKVGE-------------DKMVFVEGAKNPKSISILIRGGLERLVDETERALRD 400 (553)
T ss_dssp TTTCCEESCGGGCCSSSSEECSEEECCCCSS-------------SCCEEEESCSSSSCEEEEECCSSTTHHHHHHHHHHH
T ss_pred HHCCEEECCCCCCCHHHCCHHHHHHHHHCCC-------------CEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 5178342241008933333677777752386-------------507986068997548985504588888889999999
Q ss_pred HHHHHHHHHHCCEEECCCCCCCCCC
Q ss_conf 9999999885192760797347799
Q 000278 540 GIFAAYHLAVETSFLADEGASLPEL 564 (1731)
Q Consensus 540 ai~v~~~l~lE~~~l~ggGa~~~~~ 564 (1731)
|++++++++.|+++||||||+|.++
T Consensus 401 Al~~~r~av~~g~iVpGGGa~e~~~ 425 (553)
T 3ko1_A 401 ALGTVADVIKDGRAIAGGGAVEIEI 425 (553)
T ss_dssp HHHHHHHHHHHCEEEETTTHHHHHH
T ss_pred HHHHHHHHHHCCCEECCCCEEEEHH
T ss_conf 9998998862574401786367479
No 10
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=1.00 E-value=1 Score=460.82 Aligned_cols=301 Identities=19% Similarity=0.279 Sum_probs=280.1
Q ss_pred CCCCCCCCCCEEEHEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC---CCC---------------
Q ss_conf 66886322460001117899958977980579599999999999999998731476878---991---------------
Q 000278 245 ATGEWGYLRTSSSFGSGETRNKDKSSEEHKKAMKNVVDGHFRALVAQLLQVENLSIGDE---DDE--------------- 306 (1731)
Q Consensus 245 evGDGTt~~~s~viLa~ell~~a~~li~~g~~~~~i~~g~~~al~~qLl~~~~i~~~~~---~~~--------------- 306 (1731)
++||||| |+++||++|++++..++++|+||..|++||.+|+..++..+++++.+.. .+.
T Consensus 86 e~GDGTT---tvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~L~~vA~tsl~sKi 162 (546)
T 3p9d_F 86 ITGDGTT---TVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKV 162 (546)
T ss_dssp HCSSCHH---HHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSTTCHHHHHHHHHHTCSTT
T ss_pred HHCCCCC---CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 7489821---0999999999999999867998689999999999999999997005555665688999999999817876
Q ss_pred -HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEEEECCC
Q ss_conf -1568889999999997507688899998999948999816998200289997899542045899236329849992241
Q 000278 307 -ESWLEIITSLSWEAATLLKPDMSKGGGMDPGGYVKVKCIASGRRCESMVVKGVVCKKNVAHRRMASKMEKPRLLILGGA 385 (1731)
Q Consensus 307 -~~w~~~l~~L~~~A~~~V~~d~~~~~~mDi~~~VkIkkI~GGs~~DS~lV~GvV~~Kn~a~k~M~~~i~nprILll~~~ 385 (1731)
..|.+.|++++++|+..|.+. .+..+|+ ++|+|+|++||+..||++|+|++|+|++.|+.|+++++||+||+++|+
T Consensus 163 ~~~~~d~la~l~vdaV~~V~~~--~~~~~dl-~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~en~kIll~~~~ 239 (546)
T 3p9d_F 163 DADLTEVLTPIVTDAVLSVYDA--QADNLDL-HMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVS 239 (546)
T ss_dssp HHHHCSSHHHHHHHHHHHTHHH--HHTTCCG-GGEEEECCCCSCTTTCCCCSSCEESCCCCSSSSCSSBCSCCCCEECCC
T ss_pred CHHHHHHHHHHHHHHHEEEECC--CCCCCCC-HHEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCEECCCEEEEECCC
T ss_conf 4459999999998862574037--8986662-026999955887121279866998246665567526307669996276
Q ss_pred CCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCC----------CCEEEECCCCCHHHHHHHHHCCCEEECC
Q ss_conf 2100124-------6866799999999999999999999729----------9989983563199999999869602026
Q 000278 386 LEYQRVS-------NLLSSFDTLLQQEMDHLKMAVAKIEAHH----------PDVLLVEKSVSRFAQEYLLAKNVSLVLN 448 (1731)
Q Consensus 386 Le~~r~~-------~~~~sle~il~qE~e~L~~~V~kI~~~~----------pnVVLvek~Vs~~Al~~L~~~gI~vv~~ 448 (1731)
|||++.+ +...+++.++++|++++++.+++|+.++ |+|||++++|++.|++||.++||+++++
T Consensus 240 Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~gI~~vr~ 319 (546)
T 3p9d_F 240 LEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRR 319 (546)
T ss_dssp SSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTTTTCEEECC
T ss_pred CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEC
T ss_conf 66554556744997689999999999999999999999999998742015886499846767689999999889846813
Q ss_pred CCHHHHHHHHHHHCCEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCHH
Q ss_conf 89467999999949957345568999985033499999970354445778854301799997589997029995489998
Q 000278 449 TRRPLLERISRCTGAQIVPSIDHISSPKLGYCEKFHVERFLEDLGSAGQGGKKLVKTLMFFEGCPKPLGCTILLRGADGD 528 (1731)
Q Consensus 449 Vk~~~LerIAr~TGA~Iissid~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktli~feGc~~~~gcTIlLRG~s~~ 528 (1731)
+++.+|+|||++|||+++++++++++..||+|+.|+++++++ ++++||+||+++.+|||+|||+|+.
T Consensus 320 v~~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~i~g~~~~~~~tI~lrG~te~ 386 (546)
T 3p9d_F 320 AKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGE-------------EKFTYVTENTDPKSCTILIKGSTHY 386 (546)
T ss_dssp CCHHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSS-------------CCCEECSSCSCCSCEEEECCCSCHH
T ss_pred CCHHHHHHHHHHHCCEEECCHHHCCHHHCCCCCEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHH
T ss_conf 798889999998598794562008986788562799998469-------------4699995689975589997798778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCC
Q ss_conf 999999999999999999885192760797347799
Q 000278 529 ELKKVKHVVQYGIFAAYHLAVETSFLADEGASLPEL 564 (1731)
Q Consensus 529 ~L~evKr~l~dai~v~~~l~lE~~~l~ggGa~~~~~ 564 (1731)
+|+|+||+++||++++++++.|+++||||||+|.++
T Consensus 387 ~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~ 422 (546)
T 3p9d_F 387 ALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIAL 422 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCEEETTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHH
T ss_conf 999999999999999999833995995887999999
Done!