Your job contains 1 sequence.
>000279
MEVDSDAEKSNECKKFVVNNNNNNHSNEGQQGKPKRQMKTPFQLETLEKAYASETYPSES
TRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPKKMRKNVAVVMPESPIDELRAGAEP
GSDYGSGSGSGSSPYLMELRNAVGSSRGLMDDMPIVRRSYESQQSIMELRAIACVEAQLG
EPLREDGPILGMEFDSLPPDAFGAPIAGSSEQQKRSGHPYESKIYDRYDTKSNKVIPRAH
HEYQSLSDQPYFHGSPIDGSRARTSFLHANEPSSRVHGVQGHVARVRVLSQQDKPAHIFS
SPNGGEDSLLQRESTSNNRKNAQSTSHPIFGTEDPYLLSDGQTFNNDAEQRMEKKRKCDE
ARIAREVEANEIRIQKELERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEER
SLREQKREMERREKFLQKEYLRAEKRRLKEELRMEKQAAKRKVAIEKATARKMAKESMDL
IEDEQLELMDLAAASKGLSSIIHLDLETLQNLDSFRDSLSVFPPKTVRLKRPFSVQPWSD
SEENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHDHESRLLGEIHLALLKSIIKDIE
DVARTPSTGLGMNQYCAANPEGGHPRIIEGAYAWGFDIRNWQQLLNPLTWHEIFRQLALS
AGFGPKLKKRSSKWANVGDNHEGKGCEDIVSTIRNGSAAENAFAWMREKGLLLPRRSRHK
LTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTKLF
ERIAPSTYCVRPAFRKDPADAEAILAAARKKIRIFENGFLGGEDADDVERDEDSECDVEE
DPEVEDLATPSSANKNIDRYDEANTCLVSGKDNACNDVALSVQNEVDKGFSSFSLNDSKD
ARCQGTADNYVAVEDFGASHLNQENIEIDESKPGESWIQGLAEGDYSHLSVEERLNALVA
LIGIANEGNSIRAVLEDRLEAANALKKQMWAEAQLDKSRLKEENITKLDFTPAMGSKAET
HLASSAAEGGQSPLPVFVDNKNEASPSLAEDQKPMFGSQVFQNHLSEFPNERTVAVQDPS
TGLDNLATQQHGYASKRSRSQLKAYIAHMAEEMYVYRSLPLGQDRRRNRYWQFATSASRN
DPCSGRIFVELHDGTWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETSFKDKVRRN
LQGIDTVGQSWTAIKNEAAEMDVDPDFASSDSPSSTVCGLNSDTLETSSSFRIELGRNEI
EKKAALERFQDFQWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSC
HRTFGAVDKSSKFSEHSIQCEEKTKLGLRDIHVSDSSLPLGIRLLKPLSAVIEAYIPPEA
LEASWTDERRKTWGMKLNMSSSAEEVLQLLTILESGIKRSYLSSNFETTKELLGSSFTCA
DPWSVPILPWIPKTTAAVALRLLELDASIMYVKPEKPEQFEEDKEANERVIPSRYLPLKN
KEVVLKELDQDRLVKEENYSNLAGKRKNYRRGKGNRDHGWSRKYHKKTPSITADVGRRTA
REHEGLNLRLKQQGLRTNGRGRRTVRKRADRTSKNETFQGQMGHMVIPDSSSGLHRNLDE
EEWGVGKERMINMEDAENSNSAEAVDSDDNVQAVEYEQGNWEVGFNGATNGWNRDVMEVS
DEDEDAFGDDAGIEEAVDEYSEGNIDMSEASDQNGIDDGVDSAASEYSD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000279
(1729 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2032505 - symbol:HB-1 "homeobox-1" species:370... 1816 7.6e-304 4
TAIR|locus:2167628 - symbol:RLT2 "RINGLET 2" species:3702... 1544 9.5e-263 3
TAIR|locus:2159537 - symbol:AT5G08630 "AT5G08630" species... 139 5.6e-12 2
DICTYBASE|DDB_G0282237 - symbol:DDB_G0282237 "DDT domain-... 113 1.2e-09 3
WB|WBGene00000430 - symbol:ceh-5 species:6239 "Caenorhabd... 123 2.8e-06 1
RGD|1595784 - symbol:Hoxc9 "homeobox C9" species:10116 "R... 95 0.00014 2
UNIPROTKB|P18866 - symbol:Hoxc8 "Homeobox protein Hox-C8"... 95 0.00014 2
UNIPROTKB|F1Q361 - symbol:SHOX "Uncharacterized protein" ... 115 0.00014 2
UNIPROTKB|O15266 - symbol:SHOX "Short stature homeobox pr... 115 0.00014 2
UNIPROTKB|F1P4U7 - symbol:HOXD11 "Homeobox protein Hox-D1... 105 0.00023 1
FB|FBgn0000061 - symbol:al "aristaless" species:7227 "Dro... 125 0.00041 1
UNIPROTKB|K7GS77 - symbol:LOC100520816 "Uncharacterized p... 110 0.00050 2
UNIPROTKB|I3LF97 - symbol:I3LF97 "Uncharacterized protein... 101 0.00062 1
UNIPROTKB|H0YJ32 - symbol:SHOX2 "Short stature homeobox p... 113 0.00079 1
MGI|MGI:1353499 - symbol:Baz1b "bromodomain adjacent to z... 123 0.00086 4
UNIPROTKB|J9P3J2 - symbol:BAZ1B "Uncharacterized protein"... 119 0.00093 2
>TAIR|locus:2032505 [details] [associations]
symbol:HB-1 "homeobox-1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009630 "gravitropism" evidence=RCA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010228 "vegetative
to reproductive phase transition of meristem" evidence=IGI]
InterPro:IPR001356 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS50071
SMART:SM00389 EMBL:CP002684 GO:GO:0005634 GO:GO:0043565
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0010228
InterPro:IPR004022 InterPro:IPR018500 InterPro:IPR018501
Pfam:PF02791 SMART:SM00571 PROSITE:PS50827 IPI:IPI00539857
RefSeq:NP_174164.2 UniGene:At.27788 PRIDE:F4HY56
EnsemblPlants:AT1G28420.1 GeneID:839740 KEGG:ath:AT1G28420
OMA:ESHLRIM Uniprot:F4HY56
Length = 1705
Score = 1816 (644.3 bits), Expect = 7.6e-304, Sum P(4) = 7.6e-304
Identities = 375/599 (62%), Positives = 441/599 (73%)
Query: 458 AAKRKVAIEKATARKMAKESMDLIEDEQLELMDLAAASKGLSSIIHLDLETLQNLDSFRD 517
A +RK+AIEKATAR++AKESMDLIEDEQLELM+LAA SKGL S++ LD +TLQNL+ +RD
Sbjct: 465 AIRRKLAIEKATARRIAKESMDLIEDEQLELMELAAISKGLPSVLQLDHDTLQNLEVYRD 524
Query: 518 SLSVFPPKTVRLKRPFSVQPWSDSEENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFH 577
SLS FPPK+++LK PF++ PW DS+E VGNLLMVWRF I+F+DVL LWPFTLDEF+QAFH
Sbjct: 525 SLSTFPPKSLQLKMPFAISPWKDSDETVGNLLMVWRFLISFSDVLDLWPFTLDEFIQAFH 584
Query: 578 DHESRLLGEIHLALLKSIIKDIEDVARTPSTGLGMNQYCAANPEGGHPRIIEGAYAWGFD 637
D++SRLLGEIH+ LL+SII+D+EDVARTP +G+G NQY ANPEGGHP+I+EGAYAWGFD
Sbjct: 585 DYDSRLLGEIHVTLLRSIIRDVEDVARTPFSGIGNNQYTTANPEGGHPQIVEGAYAWGFD 644
Query: 638 IRNWQQLLNPLTWHEIFRQLALSAGFGPKLKKRSSKWANVGDNHEGKGCEDIVSTIRNGS 697
IR+W++ LNPLTW EI RQLALSAGFGPKLKK+ S+ N GD E KGCED++STIRNG+
Sbjct: 645 IRSWKKHLNPLTWPEILRQLALSAGFGPKLKKKHSRLTNTGDKDEAKGCEDVISTIRNGT 704
Query: 698 AAENAFAWMREKGLLLPRRSRHKLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLR 757
AAE+AFA MREKGLL PR+SRH+LTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLR
Sbjct: 705 AAESAFASMREKGLLAPRKSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLR 764
Query: 758 DLTTSKTPEASISVALTRDTKLFERIAPSTYCVRPAFRKDPXXXXXXXXXXRKKIRIFEN 817
DLTTSKTPEASISVALTRD KLFERIAPSTYCVR + KDP RKKIR FEN
Sbjct: 765 DLTTSKTPEASISVALTRDVKLFERIAPSTYCVRAPYVKDPKDGEAILADARKKIRAFEN 824
Query: 818 GFLGGEDAXXXXXXXXXXXXXXXXXXXXXLATPSSANKNIDRYDEANTCLVSGKDNACND 877
GF G ED LAT +SA+K+ EAN G D D
Sbjct: 825 GFTGPEDVNDLERDEDFEIDIDEDPEVDDLATLASASKSAV-LGEANVLSGKGVDTMFCD 883
Query: 878 VALSVQNEVDKGFSSFSLNDSKDARCQGTADNYVAVEDFGASHLNQENIEIDESKPGESW 937
V V++E++K FSS + K Q + + V G + IDES G+SW
Sbjct: 884 VKADVKSELEKEFSSPPPSTMKSIVPQHSERHKNTVVG-GVDAV------IDESNQGQSW 936
Query: 938 IQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMWAEAQLDK 997
IQGL EGDY HLSVEERLNALVAL+GIANEGNSIR LEDR+EAANALKKQMWAEAQLD
Sbjct: 937 IQGLTEGDYCHLSVEERLNALVALVGIANEGNSIRTGLEDRMEAANALKKQMWAEAQLDN 996
Query: 998 SRLKEENITKLDFTPAMGSKAETHLASSAAEGGQSPLPVFVDNKNEASPS-LAEDQKPM 1055
S +++ + KLD SK E+ + + F + PS L ++ KP+
Sbjct: 997 SCMRD--VLKLDLQNLASSKTESTIGLPIIQSSTRERDSF-----DRDPSQLLDETKPL 1048
Score = 949 (339.1 bits), Expect = 2.0e-198, Sum P(4) = 2.0e-198
Identities = 207/404 (51%), Positives = 256/404 (63%)
Query: 928 IDESKPGESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKK 987
IDES G+SWIQGL EGDY HLSVEERLNALVAL+GIANEGNSIR LEDR+EAANALKK
Sbjct: 927 IDESNQGQSWIQGLTEGDYCHLSVEERLNALVALVGIANEGNSIRTGLEDRMEAANALKK 986
Query: 988 QMWAEAQLDKSRLKEENITKLDFTPAMGSKAETHLASSAAEGGQSPLPVFVDNKNEASPS 1047
QMWAEAQLD S +++ + KLD SK E+ + + F + PS
Sbjct: 987 QMWAEAQLDNSCMRD--VLKLDLQNLASSKTESTIGLPIIQSSTRERDSF-----DRDPS 1039
Query: 1048 -LAEDQKPMFGSQVFQNHLSEFPNERTVAVQDPSTGLDNLATQQHGYASKRSRSQLKAYI 1106
L ++ KP+ + N L + ER + QD N++ Q YASKRSRSQLK+YI
Sbjct: 1040 QLLDETKPL---EDLSNDLHKSSAERALINQDA-----NIS--QENYASKRSRSQLKSYI 1089
Query: 1107 AHMAEEMYVYRSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHDGTWRLIDTVEAFD 1166
H AEE+Y YRSLPLGQDRR NRYW FA S S++DPCS +FVELHDG W LID+ EAFD
Sbjct: 1090 GHKAEEVYPYRSLPLGQDRRHNRYWHFAVSVSKSDPCSRLLFVELHDGKWLLIDSEEAFD 1149
Query: 1167 ALLSSLDARGTRESHLRIMLQKIETSFKDKVRRNLQGIDTVGQSWTAIKNEAAEMXXXXX 1226
L++SLD RG RESHLRIMLQKIE SFK+ ++++ + ++ N +
Sbjct: 1150 ILVASLDMRGIRESHLRIMLQKIEGSFKENACKDIKLARNPFLTEKSVVNHSP------- 1202
Query: 1227 XXXXXXXXXTVCGLNSDTLETSSSFRIELGRNEIEKKAALERFQDFQWWMWRECFNSLSL 1286
+ G NSD++ETS+S R++LGRN+ E K +RF DFQ WMW E ++SL
Sbjct: 1203 TDSVSPSSSAISGSNSDSMETSTSIRVDLGRNDTENKNLSKRFHDFQRWMWTETYSSLPS 1262
Query: 1287 CASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSCHRTFGAVDKS 1330
CA K K R +LL CD C+ SYL E C SCH+ VD S
Sbjct: 1263 CARKYGKKRS-ELLATCDACVASYLSEYTFCSSCHQRLDVVDSS 1305
Score = 578 (208.5 bits), Expect = 7.6e-304, Sum P(4) = 7.6e-304
Identities = 160/390 (41%), Positives = 201/390 (51%)
Query: 3 VDSDAEKSNECKKFVVXXXXXXHSNEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTR 62
V DA +N+ KK S +G+ KPKRQMKTPFQLETLEK Y+ E YPSE+TR
Sbjct: 15 VVGDANLNNKKKKI----DNNSSSKDGRV-KPKRQMKTPFQLETLEKVYSEEKYPSEATR 69
Query: 63 AELSEKLGLSDRQLQMWFCHRRLXXXXXXXXXXXXXXXXVAVVMPESPIDELRAGA---- 118
AELSEKL LSDRQLQMWFCHRRL VA V S ++EL A A
Sbjct: 70 AELSEKLDLSDRQLQMWFCHRRLKDKKDGQSNKPVKSS-VAAVQSAS-VNELPAAAGSVP 127
Query: 119 EPXXXXXXXXXXXXXPYLMELRN-AVGSS--RGLMDDMPIVRR-SYESQQSIMELRAIAC 174
E PY RN A GSS R +D+ + + SYES+ S M RAI C
Sbjct: 128 EQDSRSDSGSESGCSPYSNSRRNFASGSSSSRAELDEYETMGKPSYESRLSTMVHRAIVC 187
Query: 175 VEAQLGEPLREDGPILGMEFDSLPPDAFGAPIAGSSEQQKRSGHPYESKIYDRYDTKSNK 234
+EAQLGEPLR+DGPILGMEFD LPP AFG PIA QK HPYES +Y+R+D + +
Sbjct: 188 IEAQLGEPLRDDGPILGMEFDPLPPGAFGTPIA----MQKHLLHPYESDLYERHDPRPRR 243
Query: 235 --VIPRAHHEYQSLSDQPYFHGSPIDG-SRARTSFLHANEPSSRVHGVQGHVARVRVLSQ 291
R+ HE QSL D F + + S + SR+ H A V
Sbjct: 244 SHAAARSFHEQQSLDDPSSFTPNMYERYSENHARGMDYEVARSRISSFM-H-ANGPVPRS 301
Query: 292 QDKPAHIFSSPNGGEDSLLQR-ESTSNNRKNAQSTSHPIFGTEDPYLLSDGQTFNNDAEQ 350
P H + + + + ES + + + GTEDPYLL DG ++D
Sbjct: 302 YVTPGHASRNCSTSQQDMPSPIESAHHGDRFLLEKDSSVLGTEDPYLLPDGVRKSSD--- 358
Query: 351 RMEKKRKCDEARIAREVEANEIRIQKELER 380
+ +K K ++ R+ R E E K+LE+
Sbjct: 359 -VHRKGKINDGRLGRGSETRENHGPKDLEK 387
Score = 520 (188.1 bits), Expect = 7.6e-304, Sum P(4) = 7.6e-304
Identities = 160/454 (35%), Positives = 219/454 (48%)
Query: 1298 QLLVICDVCLDSYLCEDAHCPSCHRTFGAVDKSSKFSEHSIQCEEKTKLGLRDIHVSDSS 1357
+LL CD C+ SYL E C SCH+ VD S + D ++ S
Sbjct: 1273 ELLATCDACVASYLSEYTFCSSCHQRLDVVDSSE----------------ILDSGLAVSP 1316
Query: 1358 LPLGIRLLKPLSAVIEAYIPPEALEASWTDERRKTWGMKLNMSSSAEEVLQLLTILESGI 1417
LP G+RLLKPL +EA +P EALE+ WT+++RK WG +LN SSS E+LQ+LT LES I
Sbjct: 1317 LPFGVRLLKPLLVFLEASVPDEALESFWTEDQRKKWGFRLNTSSSPGELLQVLTSLESAI 1376
Query: 1418 KRSYLSSNFETTKELLGSSFTCADPW-SVPILPWIPKTTAAVALRLLELDASIMYVKPEK 1476
K+ LSSNF + KELLG++ AD SV +LPWIPKT +AVALRL ELDASI+YVKPEK
Sbjct: 1377 KKESLSSNFMSAKELLGAANAEADDQGSVDVLPWIPKTVSAVALRLSELDASIIYVKPEK 1436
Query: 1477 PEQFEEDKEANERVIPSRYLPLKNKEVVLKELDQDRLVKEENYSNLAXXXXXXXXXXXXX 1536
PE ED+ + P R P K K +E DQD + N
Sbjct: 1437 PEVIPEDENEQISLFP-RDSPFKGKGPREQE-DQDEVAPNPGNRNKKRARVSLGS----- 1489
Query: 1537 DHGWSRKYHKKTPSITAD---VGRRTAREHEGLNLRLKQQGLRTNGRGRRTVRKRADRTS 1593
G +RK +K + VGRR + NL + + G+G+RTVRKR +R
Sbjct: 1490 --GSNRKVKRKKAQSGLNKFVVGRRNVAVNS--NLMAVELNHQVPGKGKRTVRKRPERID 1545
Query: 1594 K-NETFQGQMGHMVIPDSSSGLHRNLDEEE---------WGVGKERMINMEDAENSNSAE 1643
+ N +M ++V P S + + +EEE W G+ ED N
Sbjct: 1546 EDNSHLVNRMANIVRPKSEE-VEEDEEEEEQTFRDINEDWAAGETPREMEEDWANETPNR 1604
Query: 1644 AV------DSDDNVQAVEYEQ---GNWEVGFNGATNGWNRDV-MEVSXXXXXXXXXXXXX 1693
+ D DN VE E G V ++ N W D ++
Sbjct: 1605 MMTPMQVDDESDNSVGVESEDEDGGGQFVDYS-QRNKWGLDWNSNLNVAIEEDEEEEVVG 1663
Query: 1694 XXXVDEYSEGNIDMSEASDQNGIDDGVDSAASEY 1727
V+ E + +MSE+S+ + + ++AA+ Y
Sbjct: 1664 VGRVE--GEDDAEMSESSEDDDVP--ANNAANNY 1693
Score = 379 (138.5 bits), Expect = 3.6e-278, Sum P(3) = 3.6e-278
Identities = 112/283 (39%), Positives = 151/283 (53%)
Query: 134 PYLMELRN-AVGSS--RGLMDDMPIVRR-SYESQQSIMELRAIACVEAQLGEPLREDGPI 189
PY RN A GSS R +D+ + + SYES+ S M RAI C+EAQLGEPLR+DGPI
Sbjct: 143 PYSNSRRNFASGSSSSRAELDEYETMGKPSYESRLSTMVHRAIVCIEAQLGEPLRDDGPI 202
Query: 190 LGMEFDSLPPDAFGAPIAGSSEQQKRSGHPYESKIYDRYDTKSNK--VIPRAHHEYQSLS 247
LGMEFD LPP AFG PIA QK HPYES +Y+R+D + + R+ HE QSL
Sbjct: 203 LGMEFDPLPPGAFGTPIA----MQKHLLHPYESDLYERHDPRPRRSHAAARSFHEQQSLD 258
Query: 248 DQPYF-----------HGSPIDGSRART---SFLHANEPSSRVHGVQGHVARVRVLSQQD 293
D F H +D AR+ SF+HAN P R + GH +R SQQD
Sbjct: 259 DPSSFTPNMYERYSENHARGMDYEVARSRISSFMHANGPVPRSYVTPGHASRNCSTSQQD 318
Query: 294 KPAHIFSSPNGGEDSLLQRESTSNNRKNAQSTSHPIFGTEDPYLLSDGQTFNNDAEQ--- 350
P+ I S + G+ LL+++S+ + GTEDPYLL DG ++D +
Sbjct: 319 MPSPI-ESAHHGDRFLLEKDSS-------------VLGTEDPYLLPDGVRKSSDVHRKGK 364
Query: 351 ----RMEKKRKCDEARIAREVEA-------NEIRIQKELERQD 382
R+ + + E +++E NE R++KE+ER +
Sbjct: 365 INDGRLGRGSETRENHGPKDLEKLEIQRKKNEERMRKEMERNE 407
Score = 131 (51.2 bits), Expect = 5.6e-252, Sum P(3) = 5.6e-252
Identities = 45/151 (29%), Positives = 78/151 (51%)
Query: 243 YQSLSDQPYFHGSPIDGSRAR-TSFLHANEPSSRVHGVQGHVARVRVLSQQDKPAHIFSS 301
Y+ S+ + G + +R+R +SF+HAN P R + GH +R SQQD P+ I S
Sbjct: 268 YERYSEN-HARGMDYEVARSRISSFMHANGPVPRSYVTPGHASRNCSTSQQDMPSPI-ES 325
Query: 302 PNGGEDSLLQRESTSNNRKNAQSTSHPIFGTEDPYL---LSDG------QTFNNDAEQRM 352
+ G+ LL+++S+ ++ + + D + ++DG +T N + +
Sbjct: 326 AHHGDRFLLEKDSSVLGTEDPYLLPDGVRKSSDVHRKGKINDGRLGRGSETRENHGPKDL 385
Query: 353 EK---KRKCDEARIAREVEANEIRIQKELER 380
EK +RK +E R+ +E+E NE +KE ER
Sbjct: 386 EKLEIQRKKNEERMRKEMERNERERRKEEER 416
Score = 60 (26.2 bits), Expect = 4.2e-258, Sum P(5) = 4.2e-258
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 1619 DEEEWGVGKERMINMEDAENSNSAEAVDSDDNVQAVEYEQ 1658
DEEE VG R+ +DAE S S+E D N A Y++
Sbjct: 1656 DEEEEVVGVGRVEGEDDAEMSESSEDDDVPANNAANNYDR 1695
Score = 58 (25.5 bits), Expect = 7.6e-304, Sum P(4) = 7.6e-304
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 350 QRMEKKRKCDEARIAREVEANEIRIQKELERQ 381
+R E++R+ +E R+ RE E R+Q+E R+
Sbjct: 404 ERNERERRKEEERLMRERIKEEERLQREQRRE 435
Score = 50 (22.7 bits), Expect = 5.3e-303, Sum P(4) = 5.3e-303
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 349 EQRMEKKRKCDEARIARE----VEANEIRIQKELERQD 382
E+R+ ++R +E R+ RE VE E +Q+E ER +
Sbjct: 414 EERLMRERIKEEERLQREQRREVERREKFLQRENERAE 451
Score = 49 (22.3 bits), Expect = 6.8e-303, Sum P(4) = 6.8e-303
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 342 QTFNNDAEQRMEKKRKCDEARIAREVEANEIRIQKELERQ 381
+ F +R EKK++ DE R ++ ++ I+K R+
Sbjct: 440 EKFLQRENERAEKKKQKDEIRREKDAIRRKLAIEKATARR 479
Score = 44 (20.5 bits), Expect = 7.3e-43, Sum P(3) = 7.3e-43
Identities = 25/104 (24%), Positives = 42/104 (40%)
Query: 190 LGMEFDSLPPDAFGAPIAGSSEQQKRSGHPYESKIYDRYDTKSNKVIPRAHHEYQSLSDQ 249
L EF S PP + + SE+ K + + D +SN+ Q L++
Sbjct: 892 LEKEFSSPPPSTMKSIVPQHSERHKNTVVGGVDAVID----ESNQ----GQSWIQGLTEG 943
Query: 250 PYFHGSPIDGSRARTSFLH-ANEPSSRVHGVQGHVARVRVLSQQ 292
Y H S + A + + ANE +S G++ + L +Q
Sbjct: 944 DYCHLSVEERLNALVALVGIANEGNSIRTGLEDRMEAANALKKQ 987
Score = 41 (19.5 bits), Expect = 8.2e-100, Sum P(4) = 8.2e-100
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 869 SGKDNACNDVALSVQNE--VDKGFSSFSLNDS 898
S K+NAC D+ L+ +N +K + S DS
Sbjct: 1175 SFKENACKDIKLA-RNPFLTEKSVVNHSPTDS 1205
Score = 38 (18.4 bits), Expect = 9.8e-302, Sum P(4) = 9.8e-302
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 350 QRMEKKRKCDEARIAREVEANEIRIQKELERQ 381
+R EK + + R ++ + +EIR +K+ R+
Sbjct: 437 ERREKFLQRENERAEKKKQKDEIRREKDAIRR 468
Score = 37 (18.1 bits), Expect = 4.2e-258, Sum P(5) = 4.2e-258
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 1453 KTTAAVALRLLELDASIMYVKPEKPEQFEEDKEANERVIPSRYLPLKNKEVVLKELDQDR 1512
KT + + L +++ P Q ++ + E + S L + E L ++QD
Sbjct: 1014 KTESTIGLPIIQSSTRERDSFDRDPSQLLDETKPLEDL--SNDLHKSSAERAL--INQDA 1069
Query: 1513 LVKEENYSN 1521
+ +ENY++
Sbjct: 1070 NISQENYAS 1078
Score = 37 (18.1 bits), Expect = 2.6e-43, Sum P(2) = 2.6e-43
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 153 MPIVRRSYESQQSIMELRAIACVEAQLGE 181
+P R Y ++S + ACV + L E
Sbjct: 1260 LPSCARKYGKKRSELLATCDACVASYLSE 1288
>TAIR|locus:2167628 [details] [associations]
symbol:RLT2 "RINGLET 2" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009630 "gravitropism" evidence=RCA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010228 "vegetative
to reproductive phase transition of meristem" evidence=IGI]
InterPro:IPR001356 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0043565 GO:GO:0003700 EMBL:AB005239 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0010228 InterPro:IPR004022 InterPro:IPR018500
InterPro:IPR018501 Pfam:PF02791 SMART:SM00571 PROSITE:PS50827
IPI:IPI00536771 RefSeq:NP_199231.1 UniGene:At.24988
ProteinModelPortal:Q9FFH1 SMR:Q9FFH1 PRIDE:Q9FFH1
EnsemblPlants:AT5G44180.1 GeneID:834441 KEGG:ath:AT5G44180
TAIR:At5g44180 HOGENOM:HOG000241585 InParanoid:Q9FFH1 OMA:AFHDYDP
PhylomeDB:Q9FFH1 ProtClustDB:CLSN2715588 ArrayExpress:Q9FFH1
Genevestigator:Q9FFH1 Uniprot:Q9FFH1
Length = 1694
Score = 1544 (548.6 bits), Expect = 9.5e-263, Sum P(3) = 9.5e-263
Identities = 316/577 (54%), Positives = 407/577 (70%)
Query: 457 QAAKRKVAIEKATARKMAKESMDLIEDEQLELMDLAAASKGLSSIIHLDLETLQNLDSFR 516
+ A+ K A E+A ARK+AKESM+LIEDE+LELM++AA +KGL S++ LD ETLQNLD +R
Sbjct: 429 EVARLKAANERAIARKIAKESMELIEDERLELMEVAALTKGLPSMLALDFETLQNLDEYR 488
Query: 517 DSLSVFPPKTVRLKRPFSVQPWSDSEENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAF 576
D ++FPP +V+LK+PF+V+PW+ S+ENV NLLMVWRF ITFADVLGLWPFTLDEF QAF
Sbjct: 489 DKQAIFPPTSVKLKKPFAVKPWNGSDENVANLLMVWRFLITFADVLGLWPFTLDEFAQAF 548
Query: 577 HDHESRLLGEIHLALLKSIIKDIEDVARTPSTGLGMNQYCAANPEGGHPRIIEGAYAWGF 636
HD++ RL+GEIH+ LLK+IIKDIE V RT STG+G NQ AANP GGHP ++EGAYAWGF
Sbjct: 549 HDYDPRLMGEIHIVLLKTIIKDIEGVVRTLSTGVGANQNVAANPGGGHPHVVEGAYAWGF 608
Query: 637 DIRNWQQLLNPLTWHEIFRQLALSAGFGPKLKKRSSKWANVGDNHEGKGCEDIVSTIRNG 696
DIR+W++ LN TW EI RQLALSAG GP+LKK + + +V D++E E+++ +R G
Sbjct: 609 DIRSWRKNLNVFTWPEILRQLALSAGLGPQLKKMNIRTVSVHDDNEANNSENVIFNLRKG 668
Query: 697 SAAENAFAWMREKGLLLPRRSRHKLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGL 756
AAENAFA M+E+GL PRRSRH+LTPGTVKFAAFHVLSLEG KGL +LE+A+KIQKSGL
Sbjct: 669 VAAENAFAKMQERGLSNPRRSRHRLTPGTVKFAAFHVLSLEGEKGLNILEVAEKIQKSGL 728
Query: 757 RDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRPAFRKDPXXXXXXXXXXRKKIRIFE 816
RDLTTS+TPEAS++ AL+RDTKLFER+APSTYCVR ++RKD R++IR F+
Sbjct: 729 RDLTTSRTPEASVAAALSRDTKLFERVAPSTYCVRASYRKDAGDAETIFAEARERIRAFK 788
Query: 817 NGFLGGEDAXXXXXXXXXXXXXXXXXXXXXLATPSSANK-NIDRYDEANTCLVSGKDNAC 875
+G ED N ++ L +GK +
Sbjct: 789 SGITDVEDVDDAERDEDSESDVGEDPEVDVNLKKEDPNPLKVENLIGVEPLLENGKLDT- 847
Query: 876 NDVALSVQNEVDKGFSSFSLNDSKDARCQGT-ADNYVAVEDFGASHLNQENIEIDESKPG 934
+ ++ E+ + + KD + T AD ++ED A+ +++ DESK G
Sbjct: 848 ----VPMKTELGLPLTPSLPEEMKDEKRDDTLADQ--SLEDAVAN--GEDSACFDESKLG 899
Query: 935 ESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMWAEAQ 994
E W+QGL EGDYS+LS EERLNALVALIGIA EGN+IR LE+RLE A+ALKKQMW E Q
Sbjct: 900 EQWVQGLVEGDYSNLSSEERLNALVALIGIATEGNTIRIALEERLEVASALKKQMWGEVQ 959
Query: 995 LDKSRLKEENITKLDFTPAMGSKAETHLASSAAEGGQ 1031
LDK R KEE++ + ++ +K ++A+ A+ G Q
Sbjct: 960 LDK-RWKEESLIRANYLSYPTAKPGLNIATPAS-GNQ 994
Score = 721 (258.9 bits), Expect = 1.2e-163, Sum P(3) = 1.2e-163
Identities = 164/329 (49%), Positives = 220/329 (66%)
Query: 897 DSKDARCQGT-ADNYVAVEDFGASHLNQENIEIDESKPGESWIQGLAEGDYSHLSVEERL 955
+ KD + T AD ++ED A+ +++ DESK GE W+QGL EGDYS+LS EERL
Sbjct: 865 EMKDEKRDDTLADQ--SLEDAVAN--GEDSACFDESKLGEQWVQGLVEGDYSNLSSEERL 920
Query: 956 NALVALIGIANEGNSIRAVLEDRLEAANALKKQMWAEAQLDKSRLKEENITKLDFTPAMG 1015
NALVALIGIA EGN+IR LE+RLE A+ALKKQMW E QLDK R KEE++ + ++
Sbjct: 921 NALVALIGIATEGNTIRIALEERLEVASALKKQMWGEVQLDK-RWKEESLIRANYLSYPT 979
Query: 1016 SKAETHLASSAAEGGQSPLPVFVDNKNEASPSLAEDQKPMFGSQVFQNHLSEFPNERTVA 1075
+K ++A+ A+ G Q + + +P ++D P+ Q+ N++ P+ +
Sbjct: 980 AKPGLNIATPAS-GNQE------SSSADVTPISSQD--PVSLPQIDVNNVIAGPS---LQ 1027
Query: 1076 VQDPSTGLDNLA-TQQHGYASKRSR--SQLKAYIAHMAEEMYVYRSLPLGQDRRRNRYWQ 1132
+Q+ G++NL QQ GY + R R +QLKAY+ + AEE+YVYRSLPLGQDRRRNRYW+
Sbjct: 1028 LQENVPGVENLQYQQQQGYTADRERLRAQLKAYVGYKAEELYVYRSLPLGQDRRRNRYWR 1087
Query: 1133 FATSASRNDPCSGRIFVELHDGTWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETS 1192
F+ SASRNDP GRIFVEL DG WRLID+ EAFD L+ SLD RG RESHL ML KIE S
Sbjct: 1088 FSASASRNDPGCGRIFVELQDGRWRLIDSEEAFDYLVKSLDVRGVRESHLHFMLLKIEAS 1147
Query: 1193 FKDKVRRNLQGIDTVGQSWTAIKNEAAEM 1221
FK+ +RRN+ V +++ ++ AE+
Sbjct: 1148 FKEALRRNVAANPGVCSISSSLDSDTAEI 1176
Score = 523 (189.2 bits), Expect = 9.5e-263, Sum P(3) = 9.5e-263
Identities = 155/449 (34%), Positives = 225/449 (50%)
Query: 1240 LNSDTLETSSSFRIELG-RNEIEKKAALERFQDFQWWMWRECFNSLSLCASKNEKTRCRQ 1298
L+SDT E S++F+IELG N +E+ + L+RF F+ WMW + +L A K +
Sbjct: 1169 LDSDTAEISTTFKIELGDSNAVERCSVLQRFHSFEKWMWDNMLHPSALSAFKYGAKQSSP 1228
Query: 1299 LLVICDVCLDSYLCEDAHCPSCHRTFGAVDKSSK-FSEHSIQCEEKTKLGLRDIHVSDSS 1357
L IC +C + + D CPSC + D F+E Q + + G + S
Sbjct: 1229 LFRICRICAELHFVGDICCPSCGQMHAGPDVGELCFAEQVAQLGDNLRRGDTGFILRSSI 1288
Query: 1358 L-PLGIRLLKPLSAVIEAYIPPEALEASWTDERRKTWGMKLNMSSSAEEVLQLLTILESG 1416
L PL IRLLK A++EA +PPE LEA WT+ RK+WGMKL SSS E++ Q+LT LE+
Sbjct: 1289 LSPLRIRLLKVQLALVEASLPPEGLEAFWTENLRKSWGMKLLSSSSHEDLYQVLTTLEAA 1348
Query: 1417 IKRSYLSSNFETTKELLG-------SSFTCADPWSVPILPWIPKTTAAVALRLLELDASI 1469
+KR +LSSNFETT ELLG S TC V +LPWIPKT VALRL + D+SI
Sbjct: 1349 LKRDFLSSNFETTSELLGLQEGALASDLTCG----VNVLPWIPKTAGGVALRLFDFDSSI 1404
Query: 1470 MYVKPEKPEQFEEDKEANERV-IPSRYLP-LKNKEVVLKELDQDRLVKEENYSNLAXXXX 1527
+Y P++ +DKE+ + V + + L L K+V+ + +EEN+++
Sbjct: 1405 VYT-PDQNNDPLKDKESEDFVGLETNILRNLHEKDVMETPVQVAAYKQEENWTDPGLGGV 1463
Query: 1528 XXXXXXXXXDHGWSR---KYHKKTPSITADVGRRTAREHEGLNLRLKQQ--GLRTNGRGR 1582
G R + + K P+++ R A + LR + Q G R NGR
Sbjct: 1464 SSSGRGGRPPRGRGRPRARGNGKKPAVSVKPPRGAANSNGETMLRPRAQPRGGRKNGRRS 1523
Query: 1583 RTV-RKRADRTSK---NETFQGQMGHMVIPDSSSGLHRNLDEEEWGVGKERMINMEDAEN 1638
T RKR + + NE G+ V + + L N +++W E + +D E
Sbjct: 1524 GTKGRKRPTQGTLGICNEVGGGRRVKEVAVTAKTSLPDN--DDDWIETPE--LQDDDGEA 1579
Query: 1639 SNSA-----EAVDSDDNVQAVEYEQGNWE 1662
S+S E D DD + ++ G E
Sbjct: 1580 SSSGRSFQYEDYDDDDVMAPIDDFDGGGE 1608
Score = 502 (181.8 bits), Expect = 9.5e-263, Sum P(3) = 9.5e-263
Identities = 146/375 (38%), Positives = 200/375 (53%)
Query: 29 GQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLXXX 88
G + K KR+MKT QLE LE Y++E YPSE+ RA+LS KL LSDRQLQMWFCHRRL
Sbjct: 14 GGESKSKRKMKTAAQLEVLENTYSAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKER 73
Query: 89 XXXXXXXXXXXXXVAVVMPES---PID--ELRAGAEPXXXXXXXXXXXXXPYLMELRNAV 143
V ES P++ +L AG E ++ R A
Sbjct: 74 KSTTPSKRQRKELVTPTAMESWEPPVNAGDLVAGNE-----------------LDSRRAA 116
Query: 144 GSSRGLMDDMPIVRRSYESQQSIMELRAIACVEAQLGEPLREDGPILGMEFDSLPPDAFG 203
S G + +VRR E + E+RAI VEAQLGE LR++GP+LGMEFD LPP AFG
Sbjct: 117 RGSGG--SGVTVVRRFNEPSSA--EVRAIGYVEAQLGERLRDNGPVLGMEFDPLPPGAFG 172
Query: 204 APIAGSSEQQKRSGHPYESKIYDRYDTKSNKVIPRAHHEYQ-------SLSDQ-----PY 251
PI S + K + +E+ IY R D K K R EYQ S +D P
Sbjct: 173 MPIEMPSHR-KATRQAFETNIYVRSDVKPIKDHVRPIREYQFIPELPSSRTDHSERVSPS 231
Query: 252 FH-GSPIDGSRARTSFLHANEPSSRVHGVQGHVARVRVLSQQDKPAHIFSSPNGGEDSLL 310
H G P+DGS R S + A + + + + + + Q KP H++S PN L+
Sbjct: 232 HHFGVPLDGSVMRVSAVSAGHRDD--YKISPQIPNLNLATHQGKPGHVYS-PN-----LV 283
Query: 311 QRESTSNNRKNAQSTSHPIFGTEDPYLLSDGQTFNNDAEQ---RMEKKRKCDEARIAREV 367
+ +S +K+ T+ + +DP++ S+ + N D + ++E+ RK +EARIAREV
Sbjct: 284 EYDSPY--QKSYMDTAAQVH--DDPFVKSEREVGNEDEDDDALQLERHRKNEEARIAREV 339
Query: 368 EANEIRIQKELERQD 382
EA+E RI++ELE+QD
Sbjct: 340 EAHEKRIRRELEKQD 354
Score = 104 (41.7 bits), Expect = 1.0e-220, Sum P(3) = 1.0e-220
Identities = 43/159 (27%), Positives = 73/159 (45%)
Query: 238 RAHHEYQSLSDQPYFHGSPIDGSRARTSFLHANEPSSRVHGVQGHVARVRVLSQQDKPAH 297
R H + +S +F G P+DGS R S + A + + + + + + Q KP H
Sbjct: 221 RTDHS-ERVSPSHHF-GVPLDGSVMRVSAVSAGHRDD--YKISPQIPNLNLATHQGKPGH 276
Query: 298 IFSSPNGGE-DSLLQR---ESTSNNRKNAQSTSHPIFGTEDPYLLSDG---QTFNNDAEQ 350
++S PN E DS Q+ ++ + + S G ED D + + E
Sbjct: 277 VYS-PNLVEYDSPYQKSYMDTAAQVHDDPFVKSEREVGNEDED--DDALQLERHRKNEEA 333
Query: 351 RMEKKRKCDEARIAREVEANEI-------RIQKELERQD 382
R+ ++ + E RI RE+E ++ +I+KE+ERQD
Sbjct: 334 RIAREVEAHEKRIRRELEKQDMLRRKREEQIRKEMERQD 372
Score = 48 (22.0 bits), Expect = 8.3e-215, Sum P(3) = 8.3e-215
Identities = 38/186 (20%), Positives = 61/186 (32%)
Query: 205 PIAGSSEQQKRSGHPYESKI--YDRYDTKSNKVIPRAHHEYQSLSDQPYFHGSPIDGSRA 262
P + Q + GH Y + YD KS H+ + + D
Sbjct: 263 PNLNLATHQGKPGHVYSPNLVEYDSPYQKSYMDTAAQVHDDPFVKSEREVGNEDEDDDAL 322
Query: 263 RTSFLHANEPSSRVHGVQGHVARVR-VLSQQDKPAHIFSSPNGGEDSLLQRESTSNNRK- 320
+ NE + V+ H R+R L +QD E RE +
Sbjct: 323 QLERHRKNEEARIAREVEAHEKRIRRELEKQDMLRRKREEQIRKEMERQDRERRKEEERL 382
Query: 321 -NAQSTSHPIFGTEDPYLLSDGQTFNNDAEQRMEKKRKCDEARIAREVE----ANEIRIQ 375
+ + E L + F R EK R+ +E R +EV ANE I
Sbjct: 383 LREKQREEERYLKEQMRELQRREKFLKKETIRAEKMRQKEEMRKEKEVARLKAANERAIA 442
Query: 376 KELERQ 381
+++ ++
Sbjct: 443 RKIAKE 448
>TAIR|locus:2159537 [details] [associations]
symbol:AT5G08630 "AT5G08630" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002688 InterPro:IPR004022 InterPro:IPR018500
InterPro:IPR018501 InterPro:IPR013136 Pfam:PF02791 Pfam:PF10537
SMART:SM00571 PROSITE:PS50827 PROSITE:PS51136 OMA:LYRQRVW
IPI:IPI00537178 RefSeq:NP_196480.2 UniGene:At.32548 PRIDE:F4KB54
EnsemblPlants:AT5G08630.1 GeneID:830764 KEGG:ath:AT5G08630
Uniprot:F4KB54
Length = 723
Score = 139 (54.0 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 73/281 (25%), Positives = 120/281 (42%)
Query: 940 GLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMWAEAQLDKSR 999
G+ +G+ L VE+R +AL G A ++ + R E + K A LD +R
Sbjct: 428 GMFKGEIDEL-VEQR-HAL----GAARREEALAEARQIREEKERS-KTGEEANGVLDNNR 480
Query: 1000 LKEENITKLDFTPAMGSKAETHLASSAAEGGQSPLPVFVDNKNEASPSLAEDQKPMFGSQ 1059
L++ K + + S ++ S A G + ++N + +S ++ + +K + G+
Sbjct: 481 LEK----KKNSAQVLESSEDSKKNESTAGGSK------MENGSVSSENIEKSEKRLIGNV 530
Query: 1060 VFQNHLSEF------PNERTV---AVQDPST-GLD-------NLATQQHGYASKRSRSQL 1102
+ H + P E A +D G + + + G +R Q
Sbjct: 531 YLRKHKRQMTDTKIEPKEEEEDEKAEEDEEEKGFSVKKQEVKSASEDEKGTFERRGPEQR 590
Query: 1103 KAYIAHMAEEMYVYRSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHDGT-WRLIDT 1161
+ Y E++ V R+ PLG+DR NRYW F ++ GRIFVE D W
Sbjct: 591 RQYYEREMEKI-VIRTNPLGKDRDYNRYWWFRSN--------GRIFVENSDSEEWGYYTA 641
Query: 1162 VEAFDALLSSLDARGTRESHLRIMLQKIETSFKDKVRRNLQ 1202
E DAL+ SL+ +G RE L L+ F D++ LQ
Sbjct: 642 KEELDALMGSLNRKGERELSLYTQLE----IFYDRICSTLQ 678
Score = 117 (46.2 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 521 VFPPKTVRLKRPFSVQPWSDSEENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHDHE 580
+ PP +RP + +S + VG+LLMVW F +F L LW F+L++F A E
Sbjct: 276 LLPPDPDVTQRPSPSRDFSVPMDCVGDLLMVWDFCTSFGRQLHLWRFSLEDFENAVCHKE 335
Query: 581 SRL--LGEIHLALLKSIIKDIED 601
S L + E+H +L + +I + D
Sbjct: 336 SNLVLIMEVHASLFRFLINERGD 358
>DICTYBASE|DDB_G0282237 [details] [associations]
symbol:DDB_G0282237 "DDT domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] dictyBase:DDB_G0282237 GO:GO:0005634
EMBL:AAFI02000046 InterPro:IPR004022 InterPro:IPR018501
InterPro:IPR013136 Pfam:PF02791 Pfam:PF10537 PROSITE:PS50827
PROSITE:PS51136 eggNOG:NOG302161 RefSeq:XP_640302.1 PRIDE:Q54ST3
EnsemblProtists:DDB0216395 GeneID:8623478 KEGG:ddi:DDB_G0282237
InParanoid:Q54ST3 OMA:LYRQRVW Uniprot:Q54ST3
Length = 885
Score = 113 (44.8 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 29/83 (34%), Positives = 40/83 (48%)
Query: 530 KRPFSVQPWSDSEENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHDH-ESRLLGEIH 588
+RP + + G+ LMVW F F VL L PF LD+F A H E+ +L E H
Sbjct: 431 ERPIASSDFFCLSNTFGDFLMVWHFLNHFEKVLLLSPFPLDDFEMAIQHHTETNILVESH 490
Query: 589 LALLKSIIKDIEDVARTPSTGLG 611
+ L+K+I + TP G
Sbjct: 491 IRLMKTIFTLPSYSSGTPKKTFG 513
Score = 88 (36.0 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 27/97 (27%), Positives = 43/97 (44%)
Query: 1112 EMYVYRSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHDGTWRLIDTVEAFDALLSS 1171
E Y R LG+DR YW + S+ I+VE +G W + + D L+
Sbjct: 768 EKYSTRLESLGRDRNYRNYWYWYQLPSK-------IYVENENGGWEYYSSKKELDDLIKY 820
Query: 1172 LDARGTRESHLRIMLQ-KIETSFKDKVRRNLQGIDTV 1207
LD RG RE L ++ K + ++N + I+ +
Sbjct: 821 LDNRGIRERKLLFNIKPKYDFIVSQLEKKNKEIIEQI 857
Score = 84 (34.6 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 32/135 (23%), Positives = 60/135 (44%)
Query: 872 DNACNDVALSVQNEVDKGFSSFSLND--SKDARCQGTADNYVAVEDFGASHLNQENIEID 929
D N++ V+ + + G +D +++ + + D G +EN EI
Sbjct: 578 DEDGNEIKKDVEMKDNDGTKDTKKDDEENEEEEEEEEEEEEEVASDEGEEEWKEEN-EII 636
Query: 930 ESKPGESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQM 989
S + + L + +Y LSVEER+ L L+ IR LE +E N +K++
Sbjct: 637 TSADANTICKVLKKKNYFKLSVEERIYILAYLVKQTIASEKIRKHLEKNVELGNEVKQEK 696
Query: 990 WAEAQLDKSRLKEEN 1004
L++ +LK+++
Sbjct: 697 KGII-LEEKQLKQDD 710
Score = 41 (19.5 bits), Expect = 5.9e-05, Sum P(3) = 5.9e-05
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 1359 PLGIRLLKPLSAVIEAYIPPEALEASWTDERRKTWGMKL 1397
P G + KP++ V+E I + DE+ + + +L
Sbjct: 736 PKGAKQKKPITPVVEKEIEKLEKKLEILDEKLEKYSTRL 774
>WB|WBGene00000430 [details] [associations]
symbol:ceh-5 species:6239 "Caenorhabditis elegans"
[GO:0000976 "transcription regulatory region sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0000976 EMBL:Z81036 PIR:S05706 PIR:T19335 RefSeq:NP_492586.2
ProteinModelPortal:P20269 SMR:P20269 EnsemblMetazoa:C16C2.1
GeneID:191616 KEGG:cel:CELE_C16C2.1 UCSC:C16C2.1 CTD:191616
WormBase:C16C2.1 eggNOG:NOG309408 GeneTree:ENSGT00680000099870
HOGENOM:HOG000017392 InParanoid:P20269 OMA:QNYWTAA NextBio:949690
Uniprot:P20269
Length = 134
Score = 123 (48.4 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 33 KPKRQMKTPF---QLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRR 84
+PKR +T F QLE LE+++ + Y S STRA+L+E LGLSD Q+++WF +RR
Sbjct: 34 RPKRP-RTVFTDEQLEKLEESFNTSGYLSGSTRAKLAESLGLSDNQVKVWFQNRR 87
>RGD|1595784 [details] [associations]
symbol:Hoxc9 "homeobox C9" species:10116 "Rattus norvegicus"
[GO:0000976 "transcription regulatory region sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0048704 "embryonic skeletal system
morphogenesis" evidence=IEA;ISO] [GO:0048706 "embryonic skeletal
system development" evidence=ISO] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS00032
PROSITE:PS50071 SMART:SM00389 RGD:1595784 GO:GO:0007275
GO:GO:0005634 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689 GO:GO:0000976
eggNOG:NOG314669 EMBL:S76301 EMBL:M37568 IPI:IPI01016344 PIR:D43559
UniGene:Rn.91646 ProteinModelPortal:P18866 SMR:P18866 STRING:P18866
UCSC:RGD:1595784 HOVERGEN:HBG107057 Genevestigator:P18866
Uniprot:P18866
Length = 108
Score = 95 (38.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 36 RQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRL 85
RQ + +Q LEK + Y + R E+S LGL++RQ+++WF +RR+
Sbjct: 19 RQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRM 68
Score = 38 (18.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 359 DEARIAREVEANEIRIQKELERQDN 383
DE ++ E E NE ++E E+++N
Sbjct: 84 DEEKV--EEEGNEEEEKEEEEKEEN 106
>UNIPROTKB|P18866 [details] [associations]
symbol:Hoxc8 "Homeobox protein Hox-C8" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS00032 PROSITE:PS50071 SMART:SM00389
RGD:1595784 GO:GO:0007275 GO:GO:0005634 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0000976 eggNOG:NOG314669 EMBL:S76301 EMBL:M37568
IPI:IPI01016344 PIR:D43559 UniGene:Rn.91646
ProteinModelPortal:P18866 SMR:P18866 STRING:P18866 UCSC:RGD:1595784
HOVERGEN:HBG107057 Genevestigator:P18866 Uniprot:P18866
Length = 108
Score = 95 (38.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 36 RQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRL 85
RQ + +Q LEK + Y + R E+S LGL++RQ+++WF +RR+
Sbjct: 19 RQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRM 68
Score = 38 (18.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 359 DEARIAREVEANEIRIQKELERQDN 383
DE ++ E E NE ++E E+++N
Sbjct: 84 DEEKV--EEEGNEEEEKEEEEKEEN 106
>UNIPROTKB|F1Q361 [details] [associations]
symbol:SHOX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR003654 Pfam:PF03826 PROSITE:PS50803
GO:GO:0000976 GeneTree:ENSGT00700000104279 OMA:SNHCPVH
EMBL:AAEX03026084 Ensembl:ENSCAFT00000017459 Uniprot:F1Q361
Length = 291
Score = 115 (45.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 7 AEKSNECKKFVVXXXXXXHSNEGQQGKPKRQMKTPF---QLETLEKAYASETYPSESTRA 63
AE ECK+ +GQ +R+ +T F QL LE+ + YP R
Sbjct: 90 AEGVYECKE--KREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMRE 147
Query: 64 ELSEKLGLSDRQLQMWFCHRR 84
ELS++LGLS+ ++Q+WF +RR
Sbjct: 148 ELSQRLGLSEARVQVWFQNRR 168
Score = 58 (25.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 152 DMPIVRRSYESQQSIMELRAIACVEAQLGEPLREDGPILGMEFDSLPPDAFGAPIAGSSE 211
+M +R ++ Q+ ++L +A L L P L PP FG PIA +E
Sbjct: 200 NMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYL-----MFPPPPFGLPIASLAE 254
>UNIPROTKB|O15266 [details] [associations]
symbol:SHOX "Short stature homeobox protein" species:9606
"Homo sapiens" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0001501 "skeletal system development" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006366 GO:GO:0001501 HOGENOM:HOG000231518
InterPro:IPR003654 Pfam:PF03826 PROSITE:PS50803 GO:GO:0000976
Orphanet:137693 eggNOG:NOG113578 HOVERGEN:HBG007233 KO:K09331
OrthoDB:EOG41C6X2 EMBL:Y11536 EMBL:Y11535 EMBL:U82668 EMBL:U89331
EMBL:BX004827 IPI:IPI00005744 IPI:IPI00411417 RefSeq:NP_000442.1
RefSeq:NP_006874.1 UniGene:Hs.105932 ProteinModelPortal:O15266
SMR:O15266 IntAct:O15266 STRING:O15266 PhosphoSite:O15266
PRIDE:O15266 DNASU:6473 Ensembl:ENST00000334060
Ensembl:ENST00000381575 Ensembl:ENST00000381578
Ensembl:ENST00000554971 GeneID:6473 KEGG:hsa:6473 UCSC:uc004cph.1
UCSC:uc004cpi.3 CTD:6473 GeneCards:GC0XP000585 HGNC:HGNC:10853
MIM:127300 MIM:249700 MIM:300582 MIM:312865 MIM:400020
neXtProt:NX_O15266 Orphanet:2632 Orphanet:240 PharmGKB:PA134978644
InParanoid:O15266 OMA:SNHCPVH PhylomeDB:O15266 GenomeRNAi:6473
NextBio:25145 Bgee:O15266 CleanEx:HS_SHOX Genevestigator:O15266
Uniprot:O15266
Length = 292
Score = 115 (45.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 7 AEKSNECKKFVVXXXXXXHSNEGQQGKPKRQMKTPF---QLETLEKAYASETYPSESTRA 63
AE ECK+ +GQ +R+ +T F QL LE+ + YP R
Sbjct: 91 AEGIYECKE--KREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMRE 148
Query: 64 ELSEKLGLSDRQLQMWFCHRR 84
ELS++LGLS+ ++Q+WF +RR
Sbjct: 149 ELSQRLGLSEARVQVWFQNRR 169
Score = 58 (25.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 152 DMPIVRRSYESQQSIMELRAIACVEAQLGEPLREDGPILGMEFDSLPPDAFGAPIAGSSE 211
+M +R ++ Q+ ++L +A L L P L PP FG PIA +E
Sbjct: 201 NMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYL-----MFPPPPFGLPIASLAE 255
>UNIPROTKB|F1P4U7 [details] [associations]
symbol:HOXD11 "Homeobox protein Hox-D11" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001656 "metanephros development" evidence=IEA]
[GO:0001658 "branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:0001759 "organ induction" evidence=IEA]
[GO:0009952 "anterior/posterior pattern specification"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IEA] [GO:0009954 "proximal/distal pattern formation"
evidence=IEA] [GO:0010720 "positive regulation of cell development"
evidence=IEA] [GO:0032332 "positive regulation of chondrocyte
differentiation" evidence=IEA] [GO:0042733 "embryonic digit
morphogenesis" evidence=IEA] [GO:0048589 "developmental growth"
evidence=IEA] [GO:0060272 "embryonic skeletal joint morphogenesis"
evidence=IEA] [GO:0060351 "cartilage development involved in
endochondral bone morphogenesis" evidence=IEA] InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0043565
GO:GO:0003700 Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024
SUPFAM:SSF46689 GO:GO:0032332 GO:GO:0048589 GO:GO:0001759
GO:GO:0010720 GeneTree:ENSGT00700000104263 IPI:IPI00583692
EMBL:AADN02020032 Ensembl:ENSGALT00000015085 Uniprot:F1P4U7
Length = 109
Score = 105 (42.0 bits), Expect = 0.00023, P = 0.00023
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRL 85
Q+ + KR T +Q+ LE+ + Y ++ R +LS L L+DRQ+++WF +RR+
Sbjct: 35 QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRM 90
>FB|FBgn0000061 [details] [associations]
symbol:al "aristaless" species:7227 "Drosophila melanogaster"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;NAS] [GO:0007449 "proximal/distal pattern formation,
imaginal disc" evidence=NAS] [GO:0048800 "antennal morphogenesis"
evidence=IMP] [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0035015
"elongation of arista core" evidence=IMP] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IEP] [GO:0035218
"leg disc development" evidence=IMP] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0043234 "protein complex"
evidence=IPI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA;IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0007480 "imaginal
disc-derived leg morphogenesis" evidence=IMP] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0045892 GO:GO:0043234
EMBL:AE014134 GO:GO:0003700 GO:GO:0045747 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0022416 InterPro:IPR003654 Pfam:PF03826
PROSITE:PS50803 GeneTree:ENSGT00700000104013 EMBL:L08401
EMBL:AY121696 PIR:A40685 RefSeq:NP_722629.1 UniGene:Dm.6423
PDB:3A01 PDB:3A02 PDB:3LNQ PDBsum:3A01 PDBsum:3A02 PDBsum:3LNQ
ProteinModelPortal:Q06453 SMR:Q06453 DIP:DIP-23247N IntAct:Q06453
MINT:MINT-827785 STRING:Q06453 EnsemblMetazoa:FBtr0078053
GeneID:33208 KEGG:dme:Dmel_CG3935 UCSC:CG3935-RA CTD:33208
FlyBase:FBgn0000061 eggNOG:NOG313402 InParanoid:Q06453 KO:K09452
OMA:FTHLGFQ OrthoDB:EOG41ZCSM PhylomeDB:Q06453
EvolutionaryTrace:Q06453 GenomeRNAi:33208 NextBio:782439
Bgee:Q06453 GermOnline:CG3935 GO:GO:0000976 GO:GO:0035015
GO:GO:0007480 Uniprot:Q06453
Length = 408
Score = 125 (49.1 bits), Expect = 0.00041, P = 0.00041
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 28 EGQQGKPKRQMK------TPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFC 81
E + PKR+ + T FQLE LEKA++ YP TR EL+ K+GL++ ++Q+WF
Sbjct: 75 EADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQ 134
Query: 82 HRR 84
+RR
Sbjct: 135 NRR 137
>UNIPROTKB|K7GS77 [details] [associations]
symbol:LOC100520816 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR003654
Pfam:PF03826 PROSITE:PS50803 GeneTree:ENSGT00700000104279
EMBL:FP015869 GeneID:100520816 RefSeq:XP_003134962.1
Ensembl:ENSSSCT00000035048 Uniprot:K7GS77
Length = 292
Score = 110 (43.8 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 28 EGQQGKPKRQMKTPF---QLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRR 84
+GQ +R+ +T F QL LE+ + YP R ELS++LGLS+ ++Q+WF +RR
Sbjct: 110 DGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRR 169
Score = 58 (25.5 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 152 DMPIVRRSYESQQSIMELRAIACVEAQLGEPLREDGPILGMEFDSLPPDAFGAPIAGSSE 211
+M +R ++ Q+ ++L +A L L P L PP FG PIA +E
Sbjct: 201 NMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYL-----MFPPPPFGLPIASLAE 255
>UNIPROTKB|I3LF97 [details] [associations]
symbol:I3LF97 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0060847
"endothelial cell fate specification" evidence=IEA] [GO:0060442
"branching involved in prostate gland morphogenesis" evidence=IEA]
[GO:0048844 "artery morphogenesis" evidence=IEA] [GO:0048839 "inner
ear development" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045840 "positive regulation of mitosis" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0035115 "embryonic forelimb
morphogenesis" evidence=IEA] [GO:0030539 "male genitalia
development" evidence=IEA] [GO:0030510 "regulation of BMP signaling
pathway" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003281
"ventricular septum development" evidence=IEA] [GO:0001894 "tissue
homeostasis" evidence=IEA] [GO:0001886 "endothelial cell
morphogenesis" evidence=IEA] [GO:0001570 "vasculogenesis"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GeneTree:ENSGT00670000097683 Ensembl:ENSSSCT00000022309
Uniprot:I3LF97
Length = 100
Score = 101 (40.6 bits), Expect = 0.00062, P = 0.00062
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRL 85
++G+ KR T QL+ LE+ YA+ + ++ R +S LS+RQ+ +WF +RR+
Sbjct: 32 RRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRV 87
>UNIPROTKB|H0YJ32 [details] [associations]
symbol:SHOX2 "Short stature homeobox protein 2"
species:9606 "Homo sapiens" [GO:0000976 "transcription regulatory
region sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000976 HGNC:HGNC:10854
EMBL:AC112502 Ensembl:ENST00000555977 Uniprot:H0YJ32
Length = 178
Score = 113 (44.8 bits), Expect = 0.00079, P = 0.00079
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 27 NEGQQGKPKRQMKTPF---QLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHR 83
+EGQ +R+ +T F QL LE+ + YP R ELS++LGLS+ ++Q+WF +R
Sbjct: 36 DEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNR 95
Query: 84 R 84
R
Sbjct: 96 R 96
>MGI|MGI:1353499 [details] [associations]
symbol:Baz1b "bromodomain adjacent to zinc finger domain,
1B" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IDA]
[GO:0003007 "heart morphogenesis" evidence=IMP] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004713 "protein tyrosine
kinase activity" evidence=ISO] [GO:0004715 "non-membrane spanning
protein tyrosine kinase activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005721
"centromeric heterochromatin" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0006333 "chromatin
assembly or disassembly" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0006468 "protein phosphorylation"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016301 "kinase activity" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0016572 "histone
phosphorylation" evidence=ISO] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0032947 "protein complex scaffold" evidence=ISO]
[GO:0034725 "DNA replication-dependent nucleosome disassembly"
evidence=ISO] [GO:0035173 "histone kinase activity" evidence=ISO]
[GO:0042393 "histone binding" evidence=IPI] [GO:0042809 "vitamin D
receptor binding" evidence=ISO] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048096 "chromatin-mediated maintenance of
transcription" evidence=IMP] [GO:0070577 "histone acetyl-lysine
binding" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0071884 "vitamin D receptor activator activity"
evidence=ISO;IMP] InterPro:IPR001841 InterPro:IPR001487
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00439 Pfam:PF00628
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS50016 SMART:SM00184
SMART:SM00249 SMART:SM00297 MGI:MGI:1353499 GO:GO:0005524
GO:GO:0046872 GO:GO:0003007 GO:GO:0008270 EMBL:CH466529
GO:GO:0006351 GO:GO:0003682 GO:GO:0004715 GO:GO:0004713
GO:GO:0043596 GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0006302 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005721 GO:GO:0000793 GO:GO:0048096
GO:GO:0016585 GO:GO:0043044 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 eggNOG:COG5076 GO:GO:0070577 InterPro:IPR018359
InterPro:IPR018500 InterPro:IPR018501 InterPro:IPR013136
Pfam:PF10537 SMART:SM00571 PROSITE:PS50827 PROSITE:PS51136
GeneTree:ENSGT00660000095335 CTD:9031 HOVERGEN:HBG050668 KO:K11658
OMA:CNKAFHL OrthoDB:EOG4MKNFK ChiTaRS:BAZ1B GO:GO:0071778
GO:GO:0035173 GO:GO:0071884 GO:GO:0034725 EMBL:AF084480
EMBL:BC141399 EMBL:AK017894 EMBL:AK037737 EMBL:AK137139
EMBL:AK140172 EMBL:AK141305 IPI:IPI00923656 IPI:IPI00930843
PIR:T17401 RefSeq:NP_035844.2 UniGene:Mm.40331
ProteinModelPortal:Q9Z277 SMR:Q9Z277 DIP:DIP-36072N IntAct:Q9Z277
STRING:Q9Z277 PhosphoSite:Q9Z277 PaxDb:Q9Z277 PRIDE:Q9Z277
Ensembl:ENSMUST00000002825 GeneID:22385 KEGG:mmu:22385
UCSC:uc008zxz.2 InParanoid:Q3USR7 NextBio:302753 Bgee:Q9Z277
CleanEx:MM_BAZ1B Genevestigator:Q9Z277
GermOnline:ENSMUSG00000002748 Uniprot:Q9Z277
Length = 1479
Score = 123 (48.4 bits), Expect = 0.00086, Sum P(4) = 0.00086
Identities = 50/217 (23%), Positives = 95/217 (43%)
Query: 922 NQENIEIDESKPGESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEA 981
N+++ ++++ + +++ L ++ L+ EE+L L AL S+ +D +E
Sbjct: 714 NKDSTPFEDNEVQDEFLEKLETSEFFELTSEEKLRILTALCHRILMTYSV----QDHMET 769
Query: 982 ANALKKQMWAEAQLDKSRLKEENITKLDFTPAMGSKAETHLASSAAEGGQSPLPVFVDNK 1041
+ ++W E +L + LKEEN D A K + A + G + + VD K
Sbjct: 770 RQQVSAELWKE-RL--AVLKEEN----DKKRAEKQKRKEMEARNKENGKEENVLGKVDRK 822
Query: 1042 NEA---SPSLAEDQKPMFGSQVFQNHLS-EFPNERTVAVQDPSTGLDNLATQQHGYASKR 1097
E + + M + + LS + +R + ++ L+ A ++ K
Sbjct: 823 KEIVKIEQQVEVEADDMISAVKSRRLLSMQAKRKREIQERETKVRLEREAEEER--MRKH 880
Query: 1098 SRSQLKAYIAHMAEEMYVYRSLPLGQDRRRNRYWQFA 1134
+ KA+ +A+ V R P+G DR NRYW F+
Sbjct: 881 KAAAEKAFQEGIAKAKLVLRRTPIGTDRNHNRYWLFS 917
Score = 67 (28.6 bits), Expect = 0.00086, Sum P(4) = 0.00086
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1156 WRLIDTVEAFDALLSSLDARGTRESHLRIMLQK 1188
W L D+ + D LLS L +G RES L+ L+K
Sbjct: 991 WFLCDSQKELDELLSCLHPQGIRESQLKERLEK 1023
Score = 52 (23.4 bits), Expect = 0.00086, Sum P(4) = 0.00086
Identities = 25/97 (25%), Positives = 44/97 (45%)
Query: 645 LNPLTWHEIFRQLALSAGFGPKLKKRSSKWANVGDNHEGKGCEDIVSTIRNGSAAENAFA 704
LNP W + + +L+ GP LK ++SK + + H +G I+S N ++F
Sbjct: 332 LNPKLWCHVHLEKSLN---GPPLKVKNSKNSKSPEEHL-EGVMKIMSPNNNKL---HSFH 384
Query: 705 WMREKGLLLPRRSRHKLTPGTVKFAAFHVLSLEGSKG 741
+ +KG + +H P K +L+ + S G
Sbjct: 385 -IPKKGPAAKKPGKHSDKPLKAKGRGKGILNGQKSTG 420
Score = 37 (18.1 bits), Expect = 0.00086, Sum P(4) = 0.00086
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 1616 RNLDEEEWGVGKERMINMEDAENSNSAEAVDSDDNV 1651
RN EE G E + E+ E E + D V
Sbjct: 1243 RNYTEESTSEGSEGDESGEEEEEEEEEEEEEEDYEV 1278
>UNIPROTKB|J9P3J2 [details] [associations]
symbol:BAZ1B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR001487 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00439 Pfam:PF00628 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS50016 PROSITE:PS50089 SMART:SM00184
SMART:SM00249 SMART:SM00297 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 InterPro:IPR018500 InterPro:IPR018501
InterPro:IPR013136 SMART:SM00571 PROSITE:PS50827 PROSITE:PS51136
GeneTree:ENSGT00660000095335 EMBL:AAEX03004244 EMBL:AAEX03004243
Ensembl:ENSCAFT00000046112 Uniprot:J9P3J2
Length = 1392
Score = 119 (46.9 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 50/217 (23%), Positives = 94/217 (43%)
Query: 922 NQENIEIDESKPGESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEA 981
N+++ ++++ + +++ L ++ L+ EE+L L AL S+ +D +E
Sbjct: 623 NKDSAPFEDNEVQDEFLEKLETSEFFELTSEEKLQILTALCHRILMTYSV----QDHMET 678
Query: 982 ANALKKQMWAEAQLDKSRLKEENITKLDFTPAMGSKAETHLASSAAEGGQSPLPVFVDNK 1041
+ ++W E +L + LKEEN D A K + A + G + D K
Sbjct: 679 RQQMSAELWKE-RL--AVLKEEN----DKKRAEKQKRKEMEARNKENGKEENGLGKPDRK 731
Query: 1042 NEA---SPSLAEDQKPMFGSQVFQNHLS-EFPNERTVAVQDPSTGLDNLATQQHGYASKR 1097
E P + + M + + L+ + ER + ++ L+ A ++ K
Sbjct: 732 KEVVKFEPQVDLGAEDMISAVKSRRLLAIQAKKEREIQEREMKVKLEREAEEER--IRKH 789
Query: 1098 SRSQLKAYIAHMAEEMYVYRSLPLGQDRRRNRYWQFA 1134
+ KA+ +A+ V R P+G DR NRYW F+
Sbjct: 790 KAAAEKAFQEGIAKAKLVMRRTPIGTDRNHNRYWLFS 826
Score = 64 (27.6 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1156 WRLIDTVEAFDALLSSLDARGTRESHLRIMLQK 1188
W L D+ + D LL+ L +G RES L+ L+K
Sbjct: 900 WFLCDSQKELDELLNCLHPQGIRESQLKERLEK 932
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1729 1550 0.00079 125 3 11 23 0.44 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 639 (68 KB)
Total size of DFA: 658 KB (2288 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 139.12u 0.10s 139.22t Elapsed: 00:00:09
Total cpu time: 139.13u 0.10s 139.23t Elapsed: 00:00:09
Start: Tue May 21 03:43:52 2013 End: Tue May 21 03:44:01 2013