BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000279
(1729 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 19/113 (16%)
Query: 21 NNNNHSNEGQQGKPKRQMK------TPFQLETLEKAYASETYPSESTRAELSEKLGLSDR 74
++ N E + PKR+ + T FQLE LEKA++ YP TR EL+ K+GL++
Sbjct: 68 SDGNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEA 127
Query: 75 QLQMWFCHRRLKDKKEKENPPKK-------------MRKNVAVVMPESPIDEL 114
++Q+WF +RR K +K+++ P+ M+ V +P +P L
Sbjct: 128 RIQVWFQNRRAKWRKQEKVGPQSHPYNPYLPGGAATMQTVVGAALPPNPFTHL 180
>sp|P20269|HM05_CAEEL Homeobox protein ceh-5 OS=Caenorhabditis elegans GN=ceh-5 PE=4
SV=4
Length = 134
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%), Gaps = 4/60 (6%)
Query: 33 KPKRQMKTPF---QLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89
+PKR +T F QLE LE+++ + Y S STRA+L+E LGLSD Q+++WF +RR K KK
Sbjct: 34 RPKRP-RTVFTDEQLEKLEESFNTSGYLSGSTRAKLAESLGLSDNQVKVWFQNRRTKQKK 92
>sp|Q90476|LHX1_DANRE LIM/homeobox protein Lhx1 OS=Danio rerio GN=lhx1a PE=2 SV=1
Length = 405
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 6 DAEKSNECKKFVVNNNNNNHSNEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAEL 65
DAE +N K NN N++ + G++ P+ +K QLETL+ A+A+ P+ R +L
Sbjct: 154 DAEIANLSDKETGNNENDDQNLGGKRRGPRTTIKAK-QLETLKAAFAATPKPTRHIREQL 212
Query: 66 SEKLGLSDRQLQMWFCHRRLKDKKEKE 92
+++ GL+ R +Q+WF +RR K+++ K+
Sbjct: 213 AQETGLNMRVIQVWFQNRRSKERRMKQ 239
>sp|Q1KKT1|HXDBA_TAKRU Homeobox protein Hox-D11a OS=Takifugu rubripes GN=hoxd11a PE=3 SV=1
Length = 265
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 21 NNNNHSNEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWF 80
+NNN N + + KR + +Q+ LE+ + Y ++ R +LS L LSDRQ+++WF
Sbjct: 182 DNNNQQNPPSRSRKKRCPYSKYQIRELEREFFFNVYINKEKRLQLSRMLNLSDRQVKIWF 241
Query: 81 CHRRLKDKK 89
+RR+K+KK
Sbjct: 242 QNRRMKEKK 250
>sp|Q9DDU0|HXABA_DANRE Homeobox protein Hox-A11a OS=Danio rerio GN=hoxa11a PE=2 SV=1
Length = 284
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 26 SNEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRL 85
+N G + + KR T FQ+ LE+ + Y ++ R +LS L L+DRQ++MWF +RR+
Sbjct: 206 ANSGPRFRKKRCPYTKFQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKMWFQNRRM 265
Query: 86 KDKK 89
K+KK
Sbjct: 266 KEKK 269
>sp|P31258|HXA11_CHICK Homeobox protein Hox-A11 OS=Gallus gallus GN=HOXA11 PE=2 SV=1
Length = 297
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%)
Query: 26 SNEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRL 85
S+ GQ+ + KR T +Q+ LE+ + Y ++ R +LS L L+DRQ+++WF +RR+
Sbjct: 219 SSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRM 278
Query: 86 KDKK 89
K+KK
Sbjct: 279 KEKK 282
>sp|Q1KL17|HXABA_TAKRU Homeobox protein Hox-A11a OS=Takifugu rubripes GN=hoxa11a PE=3 SV=1
Length = 283
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 53/86 (61%)
Query: 4 DSDAEKSNECKKFVVNNNNNNHSNEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRA 63
D+ A + E K+ +++ S++GQ+ + KR + +Q+ LE+ + Y ++ R
Sbjct: 183 DAQACRDTEAKEPREESSSPELSSDGQRTRKKRCPYSKYQIRELEREFFFSVYINKEKRM 242
Query: 64 ELSEKLGLSDRQLQMWFCHRRLKDKK 89
+LS L L+DRQ+++WF +RR+K+KK
Sbjct: 243 QLSRMLNLTDRQVKIWFQNRRMKEKK 268
>sp|Q9UIF8|BAZ2B_HUMAN Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens
GN=BAZ2B PE=1 SV=3
Length = 2168
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 62/252 (24%)
Query: 352 MEKKRKCDEARIAREVE-------ANEIRIQKE----LERQDNLRRKNEERMRKEMEKH- 399
+ K +K ++AR+A+E + A E R QKE +++Q+ ++R + RM KE+
Sbjct: 904 LRKLQKQEQARVAKEAKKQQAIMAAEEKRKQKEQIKIMKQQEKIKRIQQIRMEKELRAQQ 963
Query: 400 -------------------------ERERRKEEERLMRERQREEERSLREQKREMERREK 434
E+E R+++ L++ ++RE R + ME R+K
Sbjct: 964 ILEAKKKKKEEAANAKLLEAEKRIKEKEMRRQQAVLLKHQERERRRQHMMLMKAMEARKK 1023
Query: 435 FLQKEYLRAEKR---RLKEELRMEKQAAKRKVAIEKATARKMAKESMDLIEDEQLELMDL 491
+KE L+ EKR RL +E ++E +R++ +E A K E M L + + L
Sbjct: 1024 AEEKERLKQEKRDEKRLNKERKLE----QRRLELEMAKELKKPNEDMCLADQKPLP---- 1075
Query: 492 AAASKGLSSIIHLDLETLQNLDSFRDSLSVFPPKTVRLKRPFSVQPWSDSEENVGNLLMV 551
L I L L +F D L V V+ R F D +V NL ++
Sbjct: 1076 -----ELPRIPGLVLSG----STFSDCLMV-----VQFLRNFGKVLGFDVNIDVPNLSVL 1121
Query: 552 WRFFITFADVLG 563
+ D +G
Sbjct: 1122 QEGLLNIGDSMG 1133
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 65/103 (63%), Gaps = 16/103 (15%)
Query: 375 QKELERQDNLRRKNEERMRKE----MEKHERERRKEEERLMRER----------QREEER 420
Q+ L++++ L+R+ +ER+ +E ++K E +R+E+ERL +E Q+EEE
Sbjct: 2744 QERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEEL 2803
Query: 421 SLREQKR-EMERREKFLQKEYL-RAEKRRLKEELRMEKQAAKR 461
+EQ+R E E++E+ ++E L R E+ RL++E +++Q +R
Sbjct: 2804 KRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQER 2846
>sp|Q1MTN9|RLF2_SCHPO Chromatin assembly factor 1 subunit rlf2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rlf2 PE=3 SV=2
Length = 544
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 77/136 (56%), Gaps = 20/136 (14%)
Query: 344 FNNDAEQRMEKK---RKCDEARIAREVEANEIRIQKELERQDNLRRKNEERMRKEMEKHE 400
+N AE EKK ++ E RI R+ EA R+++E ERQ +R+ E+++R E EK
Sbjct: 68 YNGSAEAGKEKKLQKQRAQEERI-RQKEAE--RLKREKERQ---QREQEKKLR-EQEKIA 120
Query: 401 RERRKEEERLMRERQREEERSLREQKREMERREKFLQKEYLRAEKRRLKEE--LRMEKQA 458
++ KE E+L +ER R +E +Q+R+ ER +K +KE E +RL++E L E+Q
Sbjct: 121 AKKMKELEKLEKERIRLQE----QQRRKEERDQKLREKE----EAQRLRQEQILNKERQQ 172
Query: 459 AKRKVAIEKATARKMA 474
K K +++A
Sbjct: 173 LKLNNFFTKGVEKRIA 188
Score = 35.8 bits (81), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 63/105 (60%), Gaps = 14/105 (13%)
Query: 397 EKHERE-------RRKEEERLMRER---QREEERSLREQKREMERREKFLQKEYLRAEKR 446
+K +++ R+KE ERL RE+ QRE+E+ LREQ++ ++ K L+K L E+
Sbjct: 78 KKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEK--LEKERI 135
Query: 447 RLKEELRMEKQAAKRKVAIEKATARKMAKESMDLIEDEQLELMDL 491
RL+E+ R +++ ++ EK A+++ +E + E +QL+L +
Sbjct: 136 RLQEQQRRKEERDQK--LREKEEAQRLRQEQILNKERQQLKLNNF 178
>sp|P56672|OTP_DROME Homeobox protein orthopedia OS=Drosophila melanogaster GN=otp PE=2
SV=2
Length = 409
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWF 80
+ Q K R TP QL LE+ ++ YP R E++ ++GL++ ++Q+WF
Sbjct: 105 QQQDQKRHRTRFTPAQLNELERCFSKTHYPDIFMREEIAMRIGLTESRVQVWF 157
>sp|B2ZX90|FAS1_ORYSJ Chromatin assembly factor 1 subunit FSM OS=Oryza sativa subsp.
japonica GN=FSM PE=2 SV=1
Length = 940
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 12/90 (13%)
Query: 375 QKELERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKREMERREK 434
Q+E R+ R K E M+K+ K E E +KE++R R++EE + ++QK++ E EK
Sbjct: 363 QEEALREQKRREKEEAEMKKQQRKQEEEAQKEQKR----REKEEAETRKQQKKQQEEAEK 418
Query: 435 FLQKEYLRAEKRRLKEELRMEKQAAKRKVA 464
+KRR KE ++++KQ A +K A
Sbjct: 419 --------EQKRREKEAVQLKKQLAIQKQA 440
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 70/110 (63%), Gaps = 7/110 (6%)
Query: 377 ELERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKR------EME 430
+L++ + K+ ++ +K++EK +++ KEE R+ +++++++E +LREQKR EM+
Sbjct: 322 QLQKNTSTNEKDTQKAQKQVEKELKQKEKEEARMRKQQKKQQEEALREQKRREKEEAEMK 381
Query: 431 RREKFLQKEYLRAEKRRLKEELRMEKQAAKRKVAIEKATARKMAKESMDL 480
++++ ++E + +KRR KEE KQ K++ EK R+ KE++ L
Sbjct: 382 KQQRKQEEEAQKEQKRREKEEAETRKQQKKQQEEAEKEQKRR-EKEAVQL 430
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 74/120 (61%), Gaps = 11/120 (9%)
Query: 359 DEARIAREVEANEI---RIQKELERQDNLRRKNEERMRKEMEKH------ERERRKEEER 409
D++++ + NE + QK++E++ + K E RMRK+ +K E++RR++EE
Sbjct: 319 DDSQLQKNTSTNEKDTQKAQKQVEKELKQKEKEEARMRKQQKKQQEEALREQKRREKEEA 378
Query: 410 LMRERQREEERSLREQKREMERREKFLQKEYLRAEKRRLKEELRMEKQAA--KRKVAIEK 467
M+++QR++E +++++ E+ E +K+ + ++ KE+ R EK+A K+++AI+K
Sbjct: 379 EMKKQQRKQEEEAQKEQKRREKEEAETRKQQKKQQEEAEKEQKRREKEAVQLKKQLAIQK 438
>sp|P46504|YLX8_CAEEL Uncharacterized protein F23F12.8 OS=Caenorhabditis elegans
GN=F23F12.8 PE=4 SV=2
Length = 980
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 28/134 (20%)
Query: 351 RMEKKRKCDEARIAREVEANEIRIQKELERQDNL----------RRKNEERMRKEMEKHE 400
R EK+ K E R++E +E Q EL+RQ + R + ER+R E +K E
Sbjct: 326 RQEKEEKARELERRRKLEESETARQAELDRQATIYAEQERMAMERNRELERIRLEEKKRE 385
Query: 401 RERRKEE------------ERLMRERQREEER------SLREQKREMERREKFLQKEYLR 442
ER ++E ERL ERQR+ ER + R+ K + E R++ +Q++ +
Sbjct: 386 NERVRQEEIAMEISKIRELERLQLERQRKNERVRQELEAARKYKLQEEERQRKIQQQKVE 445
Query: 443 AEKRRLKEELRMEK 456
E+ R +EE R E+
Sbjct: 446 MEQIRQQEEARQEQ 459
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 13/98 (13%)
Query: 351 RMEKKRKCDEARIAREVEANEIRIQKELERQDNLRRKNEERMRKEMEKHERERRKEEERL 410
R+E+K++ +E R+ +E A EI +ELER R++ ER+R+E+E + + +EEER
Sbjct: 378 RLEEKKRENE-RVRQEEIAMEISKIRELERLQLERQRKNERVRQELEAARKYKLQEEER- 435
Query: 411 MRERQREEERSLREQKREMERREKFLQKEYLRAEKRRL 448
+R +++QK EM E+ Q+E R E+ R+
Sbjct: 436 --------QRKIQQQKVEM---EQIRQQEEARQEQLRV 462
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 95/175 (54%), Gaps = 10/175 (5%)
Query: 319 RKNAQSTSHPIFGTEDPYLLSDGQTFNNDAEQRMEKKRKCDEARIAREVE--ANEIRIQK 376
R N Q+ + F + +++ +T + +Q EK K ++ R+ +E E A E+ ++
Sbjct: 283 RYNGQTMTENEFLNQLLHIVQHQKTVSERQQQ--EKFEKMEQERLRQEKEEKARELERRR 340
Query: 377 ELERQDNLRRKNEER---MRKEMEKHERERRKEEERL-MRERQREEERSLREQKREMERR 432
+LE + R+ +R + E E+ ER +E ER+ + E++RE ER +R+++ ME
Sbjct: 341 KLEESETARQAELDRQATIYAEQERMAMERNRELERIRLEEKKRENER-VRQEEIAME-I 398
Query: 433 EKFLQKEYLRAEKRRLKEELRMEKQAAKRKVAIEKATARKMAKESMDLIEDEQLE 487
K + E L+ E++R E +R E +AA++ E+ RK+ ++ +++ + Q E
Sbjct: 399 SKIRELERLQLERQRKNERVRQELEAARKYKLQEEERQRKIQQQKVEMEQIRQQE 453
>sp|Q20497|MED12_CAEEL Mediator of RNA polymerase II transcription subunit 12
OS=Caenorhabditis elegans GN=dpy-22 PE=1 SV=2
Length = 3498
Score = 38.5 bits (88), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 379 ERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQR--------EEERSLREQKREME 430
+R + LRR+ EER+RKE E+ R +R+ EER+ +E+ R ++E+E
Sbjct: 2624 QRLELLRRQEEERLRKEAEERMRIQRENEERVRQEQMRLEAEERERIRRAEEERIQKELE 2683
Query: 431 RREKFLQKEYLRAEKRRLKEELRM 454
+ + ++E R EK R ++E RM
Sbjct: 2684 DKVRREKEEAARQEKERQEQEARM 2707
>sp|Q54Y06|Y8487_DICDI Probable cyclin-dependent serine/threonine-protein kinase
DDB_G0278487 OS=Dictyostelium discoideum GN=DDB_G0278487
PE=2 SV=1
Length = 636
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 39/57 (68%)
Query: 375 QKELERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKREMER 431
Q+ L+RQ L+++ +E+ ++E+ K ++E+ + ++ E+QR+E+ LR ++E ER
Sbjct: 415 QRLLKRQQELKKQQDEQRQQELIKKQQEQEQLRLKVEHEKQRQEQERLRLIQQEQER 471
>sp|Q8C1B1|CAMP2_MOUSE Calmodulin-regulated spectrin-associated protein 2 OS=Mus musculus
GN=Camsap2 PE=1 SV=3
Length = 1461
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 370 NEIRIQKELERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKREM 429
N++ +++ + LRR+ E ++RK+ + E E +KE + + QK+E
Sbjct: 1145 NDMAMKRAALLEKRLRREKETQLRKQQLEAEMEHKKE--------ETRRKTEEERQKKED 1196
Query: 430 ER-REKFLQKEYLRAEKRRLKEEL----RMEKQAAKRKVAIEKATARKMAKESMDLIEDE 484
ER R +F+++EY+R ++ +L E++ + QAAK+K K+ R + I+
Sbjct: 1197 ERARREFIRQEYMRRKQLKLMEDMDTVIKPRPQAAKQKKQRPKSIHRDHIESPKTPIKGP 1256
Query: 485 QLELMDLAAASKGLSSIIH 503
+ + LA+ + G S +H
Sbjct: 1257 PVSSLSLASLNTGDSESVH 1275
>sp|A6RW62|NST1_BOTFB Stress response protein nst1 OS=Botryotinia fuckeliana (strain
B05.10) GN=nst1 PE=3 SV=1
Length = 1168
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 15/77 (19%)
Query: 351 RMEKKRKCDEARIAREVEANEIRIQKELERQDNLRRKN-------EERMRKEMEKHERER 403
R + ++ +EA + RE+E + Q+ L+R++N ++K EER+RKE EK +R
Sbjct: 533 RKDAEKAAEEASL-REIEEKKAEAQR-LKREENRKKKEAQKKADEEERVRKESEK---QR 587
Query: 404 RKEEERLMRERQREEER 420
R +E+ RERQ E+ER
Sbjct: 588 RLQEQ---RERQAEQER 601
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 650,507,667
Number of Sequences: 539616
Number of extensions: 29257718
Number of successful extensions: 197574
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2443
Number of HSP's successfully gapped in prelim test: 2964
Number of HSP's that attempted gapping in prelim test: 130463
Number of HSP's gapped (non-prelim): 34224
length of query: 1729
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1597
effective length of database: 120,340,147
effective search space: 192183214759
effective search space used: 192183214759
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 69 (31.2 bits)