Query 000279
Match_columns 1729
No_of_seqs 646 out of 2810
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 02:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1473 Nucleosome remodeling 100.0 1.5E-32 3.4E-37 340.6 22.7 509 512-1427 159-701 (1414)
2 KOG0484 Transcription factor P 99.6 6.5E-16 1.4E-20 149.6 2.4 65 29-93 14-78 (125)
3 KOG0850 Transcription factor D 99.5 2.2E-14 4.7E-19 157.2 10.2 73 24-96 114-186 (245)
4 KOG0485 Transcription factor N 99.5 2.1E-14 4.6E-19 155.0 9.0 62 30-91 102-163 (268)
5 KOG0842 Transcription factor t 99.5 4.8E-14 1E-18 163.2 9.0 66 28-93 149-214 (307)
6 KOG0488 Transcription factor B 99.5 1.1E-13 2.3E-18 162.9 8.9 64 30-93 170-233 (309)
7 KOG0489 Transcription factor z 99.4 9.6E-14 2.1E-18 160.6 4.9 69 28-96 155-223 (261)
8 KOG2251 Homeobox transcription 99.4 4E-13 8.6E-18 147.1 8.6 69 26-94 31-99 (228)
9 KOG0843 Transcription factor E 99.4 1.2E-13 2.6E-18 146.4 3.8 63 31-93 101-163 (197)
10 PF02791 DDT: DDT domain; Int 99.4 3E-13 6.5E-18 123.5 5.8 59 543-601 2-61 (61)
11 KOG0492 Transcription factor M 99.4 2.3E-13 5.1E-18 146.4 4.1 68 30-97 142-209 (246)
12 smart00571 DDT domain in diffe 99.3 1.2E-12 2.7E-17 120.2 5.7 59 542-600 1-62 (63)
13 KOG0494 Transcription factor C 99.3 6.1E-13 1.3E-17 146.7 4.1 63 32-94 141-203 (332)
14 KOG0487 Transcription factor A 99.3 1.7E-12 3.7E-17 150.6 5.7 65 30-94 233-297 (308)
15 KOG0844 Transcription factor E 99.3 6.9E-12 1.5E-16 140.9 10.1 60 31-90 180-239 (408)
16 PF00046 Homeobox: Homeobox do 99.2 3.6E-12 7.9E-17 114.2 2.6 57 33-89 1-57 (57)
17 KOG4577 Transcription factor L 99.2 1.7E-11 3.7E-16 137.0 8.2 66 32-97 167-232 (383)
18 KOG1029 Endocytic adaptor prot 99.2 1.4E-09 3E-14 134.0 25.2 22 929-950 721-743 (1118)
19 KOG0848 Transcription factor C 99.2 4.8E-12 1E-16 140.8 2.5 65 31-95 198-262 (317)
20 TIGR01565 homeo_ZF_HD homeobox 99.2 2.6E-11 5.7E-16 109.2 5.7 53 32-84 1-57 (58)
21 KOG3802 Transcription factor O 99.1 1.6E-10 3.5E-15 136.3 8.8 62 31-92 293-354 (398)
22 KOG0491 Transcription factor B 99.1 2.1E-11 4.4E-16 127.6 0.8 63 31-93 99-161 (194)
23 KOG1245 Chromatin remodeling c 99.1 8.8E-10 1.9E-14 149.7 15.9 56 934-989 650-705 (1404)
24 KOG0493 Transcription factor E 99.1 5.2E-11 1.1E-15 131.8 3.1 57 33-89 247-303 (342)
25 KOG0486 Transcription factor P 99.1 9.4E-11 2E-15 133.5 4.2 65 30-94 110-174 (351)
26 smart00389 HOX Homeodomain. DN 99.0 1.7E-10 3.8E-15 102.6 3.5 56 33-88 1-56 (56)
27 PF15613 WHIM2: WSTF, HB1, Itc 99.0 3.3E-10 7.2E-15 93.5 3.6 37 1117-1153 1-37 (38)
28 cd00086 homeodomain Homeodomai 99.0 2.8E-10 6.2E-15 102.0 3.5 57 33-89 1-57 (59)
29 COG5576 Homeodomain-containing 99.0 4.2E-10 9.1E-15 120.7 5.2 67 30-96 49-115 (156)
30 KOG0847 Transcription factor, 98.9 3.2E-10 7E-15 123.0 1.4 63 30-92 165-227 (288)
31 KOG0483 Transcription factor H 98.9 1E-09 2.3E-14 121.4 2.9 60 32-91 50-109 (198)
32 KOG0490 Transcription factor, 98.8 5.5E-09 1.2E-13 118.5 7.1 64 29-92 57-120 (235)
33 PF15614 WHIM3: WSTF, HB1, Itc 98.8 4.7E-09 1E-13 89.6 3.8 35 1156-1190 1-36 (46)
34 KOG0849 Transcription factor P 98.6 5.1E-08 1.1E-12 117.7 8.6 67 28-94 172-238 (354)
35 KOG1168 Transcription factor A 98.6 2.1E-08 4.5E-13 112.9 3.1 65 27-91 304-368 (385)
36 PTZ00121 MAEBL; Provisional 98.5 8E-06 1.7E-10 107.0 21.5 34 184-220 803-836 (2084)
37 PF15612 WHIM1: WSTF, HB1, Itc 98.4 2.4E-07 5.2E-12 81.5 4.5 48 935-982 3-50 (50)
38 PTZ00121 MAEBL; Provisional 98.3 3.4E-05 7.3E-10 101.5 21.1 13 1337-1349 1993-2005(2084)
39 PF05066 HARE-HTH: HB1, ASXL, 98.1 1.6E-06 3.5E-11 81.9 3.0 68 724-793 1-72 (72)
40 PTZ00266 NIMA-related protein 98.1 0.00013 2.8E-09 97.9 20.3 11 171-181 230-240 (1021)
41 KOG0775 Transcription factor S 98.0 2E-05 4.2E-10 89.7 9.6 51 39-89 183-233 (304)
42 KOG0774 Transcription factor P 98.0 1.3E-05 2.8E-10 90.0 8.0 57 33-89 189-248 (334)
43 KOG4364 Chromatin assembly fac 98.0 0.00032 6.9E-09 87.4 19.7 18 63-80 41-58 (811)
44 KOG1029 Endocytic adaptor prot 97.7 0.0016 3.4E-08 82.4 19.7 15 339-353 309-323 (1118)
45 KOG4364 Chromatin assembly fac 97.7 0.002 4.4E-08 80.7 19.7 8 726-733 479-486 (811)
46 KOG2891 Surface glycoprotein [ 97.3 0.02 4.4E-07 65.5 20.0 20 350-369 277-296 (445)
47 KOG0490 Transcription factor, 97.2 0.0002 4.3E-09 81.5 3.6 65 28-92 149-213 (235)
48 PF05672 MAP7: MAP7 (E-MAP-115 97.2 0.054 1.2E-06 59.5 20.9 10 326-335 12-21 (171)
49 KOG2891 Surface glycoprotein [ 96.9 0.055 1.2E-06 62.1 18.1 16 179-194 195-212 (445)
50 PF05920 Homeobox_KN: Homeobox 96.8 0.00025 5.5E-09 60.0 -0.3 34 53-86 7-40 (40)
51 KOG2252 CCAAT displacement pro 96.8 0.00097 2.1E-08 82.8 4.0 58 30-87 418-475 (558)
52 KOG1144 Translation initiation 96.2 0.094 2E-06 67.5 16.2 11 1466-1476 911-921 (1064)
53 KOG2072 Translation initiation 96.0 0.69 1.5E-05 60.5 22.4 11 188-198 394-404 (988)
54 PF05262 Borrelia_P83: Borreli 95.8 0.34 7.3E-06 61.5 18.3 46 161-207 18-70 (489)
55 KOG4661 Hsp27-ERE-TATA-binding 95.7 0.1 2.2E-06 64.7 13.2 11 197-207 365-375 (940)
56 PF05262 Borrelia_P83: Borreli 95.6 0.51 1.1E-05 60.0 19.0 6 565-570 426-431 (489)
57 KOG1144 Translation initiation 95.4 0.3 6.4E-06 63.2 16.1 26 1394-1419 897-922 (1064)
58 KOG0163 Myosin class VI heavy 95.4 0.36 7.7E-06 62.0 16.6 30 562-591 1065-1099(1259)
59 KOG1146 Homeobox protein [Gene 95.3 0.021 4.5E-07 77.1 5.8 61 31-91 902-962 (1406)
60 KOG0163 Myosin class VI heavy 95.2 0.39 8.5E-06 61.6 16.0 18 641-661 1172-1189(1259)
61 PF05672 MAP7: MAP7 (E-MAP-115 95.1 1.6 3.5E-05 48.4 18.5 9 345-353 20-28 (171)
62 KOG0742 AAA+-type ATPase [Post 93.5 7.5 0.00016 48.3 20.9 9 722-730 392-400 (630)
63 KOG2412 Nuclear-export-signal 92.9 1.1 2.4E-05 56.6 13.3 14 168-181 29-42 (591)
64 COG3064 TolA Membrane protein 92.6 8.9 0.00019 45.9 19.1 12 652-663 312-323 (387)
65 KOG2412 Nuclear-export-signal 92.4 1.8 3.9E-05 54.7 14.1 15 649-663 521-535 (591)
66 KOG3054 Uncharacterized conser 92.2 0.83 1.8E-05 52.4 10.1 25 554-578 201-226 (299)
67 KOG3054 Uncharacterized conser 91.9 1.2 2.5E-05 51.3 10.8 7 743-749 276-282 (299)
68 COG3064 TolA Membrane protein 91.6 17 0.00037 43.7 19.9 15 583-597 305-319 (387)
69 PF13904 DUF4207: Domain of un 90.6 19 0.0004 43.0 19.7 9 495-503 235-243 (264)
70 KOG1924 RhoA GTPase effector D 90.5 1 2.2E-05 58.5 9.6 9 632-640 839-847 (1102)
71 PRK12704 phosphodiesterase; Pr 87.8 75 0.0016 41.7 23.7 15 563-577 278-292 (520)
72 PRK00106 hypothetical protein; 87.4 44 0.00096 43.7 21.1 9 702-710 401-409 (535)
73 KOG3623 Homeobox transcription 85.8 0.73 1.6E-05 59.4 4.1 54 39-93 564-617 (1007)
74 KOG2072 Translation initiation 83.5 1.1E+02 0.0024 41.4 21.6 14 30-43 139-152 (988)
75 PF11569 Homez: Homeodomain le 83.1 0.38 8.2E-06 43.9 0.1 41 44-84 10-50 (56)
76 KOG0742 AAA+-type ATPase [Post 81.8 1.6E+02 0.0034 37.4 23.7 26 731-756 384-410 (630)
77 PF00769 ERM: Ezrin/radixin/mo 81.6 66 0.0014 38.1 17.6 11 688-698 226-236 (246)
78 PF06524 NOA36: NOA36 protein; 81.1 1.8 3.9E-05 50.2 4.4 9 1313-1321 50-58 (314)
79 PF10446 DUF2457: Protein of u 77.9 1.5 3.3E-05 54.3 2.8 15 1702-1716 89-103 (458)
80 KOG0773 Transcription factor M 77.8 1.6 3.5E-05 53.4 3.1 58 32-89 239-299 (342)
81 KOG2507 Ubiquitin regulatory p 75.9 27 0.00059 43.6 12.3 9 548-556 337-345 (506)
82 KOG2689 Predicted ubiquitin re 74.8 31 0.00068 41.0 11.9 9 466-474 167-175 (290)
83 KOG1832 HIV-1 Vpr-binding prot 73.5 2.5 5.5E-05 55.7 3.1 38 931-968 656-693 (1516)
84 PF09726 Macoilin: Transmembra 73.4 2.6E+02 0.0057 38.1 21.6 11 63-73 153-163 (697)
85 KOG3654 Uncharacterized CH dom 73.3 2.8E+02 0.0061 35.7 20.9 36 626-667 616-651 (708)
86 KOG0943 Predicted ubiquitin-pr 72.3 3.4 7.3E-05 55.7 3.9 15 1350-1364 1378-1393(3015)
87 PF06637 PV-1: PV-1 protein (P 70.9 61 0.0013 40.2 13.4 11 567-577 416-426 (442)
88 PF02029 Caldesmon: Caldesmon; 70.7 28 0.00062 44.9 11.4 9 569-577 390-398 (492)
89 PF00769 ERM: Ezrin/radixin/mo 70.3 2.4E+02 0.0051 33.6 18.9 8 593-600 192-199 (246)
90 PF09756 DDRGK: DDRGK domain; 69.8 1.5 3.2E-05 49.6 0.0 40 554-598 100-140 (188)
91 COG4942 Membrane-bound metallo 68.5 2.3E+02 0.005 36.2 18.1 8 643-650 410-417 (420)
92 PTZ00491 major vault protein; 67.9 1.4E+02 0.0031 40.9 17.1 6 175-180 421-426 (850)
93 KOG3654 Uncharacterized CH dom 67.6 26 0.00056 44.3 9.7 15 582-596 508-522 (708)
94 KOG3119 Basic region leucine z 65.4 2.2E+02 0.0048 34.3 16.8 30 177-207 16-45 (269)
95 PF02029 Caldesmon: Caldesmon; 65.1 27 0.00058 45.1 9.6 7 83-89 13-19 (492)
96 PF05918 API5: Apoptosis inhib 64.6 2.2 4.7E-05 55.3 0.0 10 1446-1455 457-466 (556)
97 PF04218 CENP-B_N: CENP-B N-te 63.1 6.4 0.00014 35.6 2.7 46 33-83 1-46 (53)
98 KOG0612 Rho-associated, coiled 63.1 6.6E+02 0.014 36.1 23.9 15 1404-1418 1176-1190(1317)
99 TIGR01069 mutS2 MutS2 family p 60.9 1.9E+02 0.0042 39.8 17.0 16 557-572 691-706 (771)
100 PRK12705 hypothetical protein; 60.3 5.2E+02 0.011 34.0 20.5 11 700-710 372-382 (508)
101 PRK00409 recombination and DNA 60.2 1.1E+02 0.0024 42.1 14.7 17 557-573 702-718 (782)
102 PF09726 Macoilin: Transmembra 59.8 4.7E+02 0.01 35.8 20.0 13 346-358 417-429 (697)
103 PF07888 CALCOCO1: Calcium bin 57.6 5.9E+02 0.013 33.8 23.6 32 461-492 427-458 (546)
104 PLN03086 PRLI-interacting fact 57.4 46 0.001 43.7 9.9 11 1332-1342 529-539 (567)
105 PF04147 Nop14: Nop14-like fam 57.3 9.3 0.0002 52.4 4.0 7 1598-1604 254-260 (840)
106 PRK00409 recombination and DNA 57.0 2.9E+02 0.0063 38.2 17.8 8 737-744 771-778 (782)
107 COG4942 Membrane-bound metallo 53.7 6E+02 0.013 32.7 18.6 9 555-563 308-316 (420)
108 KOG2507 Ubiquitin regulatory p 53.7 1E+02 0.0022 38.9 11.3 10 567-576 366-375 (506)
109 KOG0127 Nucleolar protein fibr 53.3 8.2 0.00018 49.1 2.2 7 1621-1627 190-196 (678)
110 TIGR01069 mutS2 MutS2 family p 52.5 3.2E+02 0.0069 37.8 17.0 10 645-654 698-707 (771)
111 KOG0112 Large RNA-binding prot 52.2 75 0.0016 43.2 10.5 32 163-194 496-527 (975)
112 PF13913 zf-C2HC_2: zinc-finge 51.0 5 0.00011 31.0 -0.1 23 1315-1341 3-25 (25)
113 PF04931 DNA_pol_phi: DNA poly 50.7 11 0.00023 51.5 2.9 15 583-597 109-123 (784)
114 KOG3130 Uncharacterized conser 49.5 11 0.00023 46.4 2.4 45 1260-1304 6-53 (514)
115 KOG3598 Thyroid hormone recept 48.9 1.8E+02 0.004 41.6 13.3 7 78-84 1739-1745(2220)
116 KOG3634 Troponin [Cytoskeleton 47.9 1.4E+02 0.003 36.7 10.9 9 548-556 239-247 (361)
117 PF03154 Atrophin-1: Atrophin- 44.6 1.1E+03 0.024 33.2 20.5 8 650-657 762-769 (982)
118 PRK14474 F0F1 ATP synthase sub 42.2 5.8E+02 0.013 30.4 15.1 6 538-543 184-189 (250)
119 KOG4849 mRNA cleavage factor I 41.7 7.1E+02 0.015 31.0 15.3 15 187-201 248-262 (498)
120 KOG1265 Phospholipase C [Lipid 41.4 1.2E+03 0.026 32.7 20.1 6 51-56 398-403 (1189)
121 PF09731 Mitofilin: Mitochondr 41.0 1E+03 0.022 31.7 22.2 18 721-738 534-551 (582)
122 KOG0996 Structural maintenance 41.0 1.4E+03 0.029 33.2 19.4 15 696-710 651-665 (1293)
123 PRK13428 F0F1 ATP synthase sub 40.5 3.2E+02 0.0069 35.3 13.5 18 519-536 154-171 (445)
124 KOG2038 CAATT-binding transcri 40.3 25 0.00054 46.7 3.7 28 532-559 270-299 (988)
125 KOG0982 Centrosomal protein Nu 40.3 9.2E+02 0.02 31.0 19.7 33 548-580 440-474 (502)
126 COG2995 PqiA Uncharacterized p 40.1 18 0.00039 44.9 2.3 45 1273-1324 200-245 (418)
127 KOG2253 U1 snRNP complex, subu 39.2 6.5E+02 0.014 33.9 15.6 36 936-975 599-634 (668)
128 smart00017 OSTEO Osteopontin. 38.7 29 0.00062 40.3 3.4 30 1641-1681 44-73 (287)
129 COG5242 TFB4 RNA polymerase II 34.7 18 0.0004 41.5 1.1 31 1295-1325 255-285 (296)
130 KOG1189 Global transcriptional 34.4 32 0.00069 45.7 3.3 42 1286-1336 626-667 (960)
131 KOG4691 Uncharacterized conser 34.2 7.6E+02 0.017 28.5 13.2 26 474-499 168-193 (227)
132 PF12172 DUF35_N: Rubredoxin-l 34.0 13 0.00028 31.0 -0.1 26 1297-1322 8-33 (37)
133 KOG0943 Predicted ubiquitin-pr 33.7 31 0.00068 47.3 3.1 9 968-976 938-946 (3015)
134 PRK13428 F0F1 ATP synthase sub 33.5 7.3E+02 0.016 32.1 15.1 9 548-556 206-214 (445)
135 KOG2357 Uncharacterized conser 33.4 1.5E+02 0.0032 37.5 8.4 7 223-229 190-196 (440)
136 KOG0577 Serine/threonine prote 33.1 1.4E+03 0.03 31.0 22.5 25 971-995 826-850 (948)
137 KOG0579 Ste20-like serine/thre 32.8 1.4E+03 0.031 31.0 26.5 9 808-816 1066-1074(1187)
138 PF05071 NDUFA12: NADH ubiquin 32.2 36 0.00078 35.2 2.7 31 1119-1153 2-32 (105)
139 KOG0161 Myosin class II heavy 31.8 2.3E+03 0.049 33.0 22.5 25 1453-1477 1801-1825(1930)
140 KOG1996 mRNA splicing factor [ 30.4 3.4E+02 0.0073 33.0 10.2 21 952-972 340-360 (378)
141 KOG1146 Homeobox protein [Gene 30.1 1.7E+02 0.0038 41.7 9.1 58 32-89 444-501 (1406)
142 KOG0681 Actin-related protein 29.7 5.4E+02 0.012 34.0 12.5 9 647-655 519-527 (645)
143 KOG4246 Predicted DNA-binding 29.4 31 0.00067 46.0 2.0 18 189-206 105-122 (1194)
144 KOG1103 Predicted coiled-coil 29.3 1.2E+03 0.026 29.0 15.9 34 941-976 487-520 (561)
145 TIGR02680 conserved hypothetic 28.8 2.1E+03 0.045 32.2 19.9 33 626-661 487-519 (1353)
146 PF06637 PV-1: PV-1 protein (P 28.7 1.3E+03 0.028 29.4 14.9 13 61-73 80-92 (442)
147 PTZ00415 transmission-blocking 28.3 41 0.0009 48.1 2.9 15 1676-1690 152-166 (2849)
148 KOG2253 U1 snRNP complex, subu 28.0 1E+03 0.022 32.1 14.8 24 157-180 42-65 (668)
149 PRK15103 paraquat-inducible me 28.0 44 0.00095 42.6 3.0 30 1296-1325 217-246 (419)
150 KOG2668 Flotillins [Intracellu 27.4 1.3E+03 0.029 29.0 15.2 112 348-459 229-343 (428)
151 KOG3064 RNA-binding nuclear pr 27.4 31 0.00068 40.5 1.5 10 1615-1624 178-187 (303)
152 KOG3623 Homeobox transcription 27.3 1.4E+02 0.0031 39.9 7.1 61 31-91 625-685 (1007)
153 KOG1984 Vesicle coat complex C 27.2 1.6E+03 0.035 31.4 16.6 47 1357-1406 807-853 (1007)
154 KOG2441 mRNA splicing factor/p 27.1 6.7E+02 0.014 31.8 12.2 10 297-306 224-233 (506)
155 KOG1830 Wiskott Aldrich syndro 26.0 1.5E+03 0.033 29.1 16.5 219 104-364 263-484 (518)
156 KOG0262 RNA polymerase I, larg 26.0 48 0.001 46.3 2.9 18 1263-1280 1064-1085(1640)
157 COG2433 Uncharacterized conser 25.6 1.2E+03 0.025 31.5 14.6 26 168-197 162-187 (652)
158 PTZ00415 transmission-blocking 24.6 47 0.001 47.6 2.5 22 1612-1643 134-155 (2849)
159 TIGR02098 MJ0042_CXXC MJ0042 f 24.5 22 0.00048 29.7 -0.3 25 1301-1325 3-36 (38)
160 KOG3598 Thyroid hormone recept 24.4 3.7E+02 0.008 38.9 10.3 7 212-218 1965-1971(2220)
161 PRK02363 DNA-directed RNA poly 22.2 91 0.002 33.6 3.6 77 729-808 8-84 (129)
162 KOG3915 Transcription regulato 21.9 1.8E+03 0.04 28.7 15.2 153 275-448 432-591 (641)
163 CHL00019 atpF ATP synthase CF0 21.5 1.2E+03 0.026 26.3 15.1 90 381-470 54-143 (184)
164 KOG0980 Actin-binding protein 21.4 2.4E+03 0.053 29.9 20.8 267 244-513 255-532 (980)
165 COG5406 Nucleosome binding fac 21.0 65 0.0014 42.1 2.5 31 1161-1191 592-622 (1001)
166 COG2433 Uncharacterized conser 20.9 1.6E+03 0.035 30.2 14.6 11 184-194 190-200 (652)
167 KOG0161 Myosin class II heavy 20.9 3.4E+03 0.073 31.4 22.2 12 644-655 1153-1164(1930)
168 KOG2038 CAATT-binding transcri 20.6 95 0.0021 41.7 3.9 36 1383-1421 534-569 (988)
169 PF09862 DUF2089: Protein of u 20.3 57 0.0012 34.4 1.6 24 1303-1326 1-24 (113)
No 1
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.5e-32 Score=340.57 Aligned_cols=509 Identities=17% Similarity=0.155 Sum_probs=342.6
Q ss_pred cccccCCCCCCCCccccCCCCCCCCCCCCChhhhhhhhhhHHHHHhhhhccccCCCCHHHHHHHHh-cCChhHHHHHHHH
Q 000279 512 LDSFRDSLSVFPPKTVRLKRPFSVQPWSDSEENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFH-DHESRLLGEIHLA 590 (1729)
Q Consensus 512 l~s~R~~LppfPP~~v~lkrP~ps~Pl~vp~e~vg~LL~VweFL~~F~~~L~LspfTLddf~~AL~-~~ds~LL~eiH~a 590 (1729)
++.+...+-..|+.-+++..|-++.++.||+++|+++|.||+||++|+.+|.|+||+|+|||+||. +.++.||+|+|++
T Consensus 159 ~d~~~p~~~~e~~~vPpleLP~SSedi~IPne~Vm~alsIYevLRsF~~~LrisPF~feDFcaAL~~~~~ssLlaeVHva 238 (1414)
T KOG1473|consen 159 LDEPNPDLEEEPPLVPPLELPESSEDIGIPNEHVMDALSIYEVLRSFSRQLRISPFRFEDFCAALISHEQSSLLAEVHVA 238 (1414)
T ss_pred CCCCCCChhhccccCCCccCCCcccccCCcHHHHHHHHHHHHHHHhhcceEEeCCccHHHHHHHHHhcCchhHHHHHHHH
Confidence 344444455567777889999999999999999999999999999999999999999999999999 5777899999999
Q ss_pred HHHHHHhChhhhccCCCCCCCCccccCCCCCCCcchhhhhhhccccchhhhhhccCCccHHHHHHHHHHHhCCCCccccc
Q 000279 591 LLKSIIKDIEDVARTPSTGLGMNQYCAANPEGGHPRIIEGAYAWGFDIRNWQQLLNPLTWHEIFRQLALSAGFGPKLKKR 670 (1729)
Q Consensus 591 LLk~ll~d~ed~~~~~s~~~~~~~~~~~~~~~~~~~~~~~a~~wg~~~~~w~~~Ld~lTWpEILRq~l~a~G~g~~~~~~ 670 (1729)
|||+|+++++ +++++||+.. .+|+++ +-..+||+||||||||||+.|.|+-..-
T Consensus 239 LLrA~lr~eD----~~~Thfs~~d--~Kdsvn-----------------I~l~liD~lTWPevLrqY~ea~~~ad~~--- 292 (1414)
T KOG1473|consen 239 LLRALLREED----RLSTHFSPLD--SKDSVN-----------------IDLYLIDTLTWPEVLRQYFEADKHADGP--- 292 (1414)
T ss_pred HHHHHhhhhh----hcccccCccc--ccccee-----------------eeeehhccccHHHHHHHHHHhccccCcc---
Confidence 9999999855 3456898843 444433 2236799999999999999999742110
Q ss_pred cccccCCCCCCCCCCcccchhhhcccchhHHHHHHHHHhcCCCccccccccCccchhHHHHHHHhhhcCCCcchhHHHHH
Q 000279 671 SSKWANVGDNHEGKGCEDIVSTIRNGSAAENAFAWMREKGLLLPRRSRHKLTPGTVKFAAFHVLSLEGSKGLTVLELADK 750 (1729)
Q Consensus 671 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~~m~~~g~~~~~~~~~rl~pgTvk~a~f~vls~~g~~gl~v~ela~~ 750 (1729)
T Consensus 293 -------------------------------------------------------------------------------- 292 (1414)
T KOG1473|consen 293 -------------------------------------------------------------------------------- 292 (1414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccccCCCCCCchhhHHHhhcccccchhccCCCcccccCCccCChhhHHHHHHHHHHHHHhhccCCCCCCCCCcccc
Q 000279 751 IQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRPAFRKDPADAEAILAAARKKIRIFENGFLGGEDADDVER 830 (1729)
Q Consensus 751 iqk~glrd~~ts~t~ea~i~~alsrd~~Lfer~apsty~~r~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~ 830 (1729)
||--++| |
T Consensus 293 ----------------------------v~~~~n~--------f------------------------------------ 300 (1414)
T KOG1473|consen 293 ----------------------------VWDIFNP--------F------------------------------------ 300 (1414)
T ss_pred ----------------------------hhhhhcc--------c------------------------------------
Confidence 0100100 0
Q ss_pred cccccCCCCCCccccccCCCCCCCcccccccccccccccCCCCcccccccccccccccCCCccCCCCCccccccCccccc
Q 000279 831 DEDSECDVEEDPEVEDLATPSSANKNIDRYDEANTCLVSGKDNACNDVALSVQNEVDKGFSSFSLNDSKDARCQGTADNY 910 (1729)
Q Consensus 831 ~~d~~~~~~~d~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1729)
T Consensus 301 -------------------------------------------------------------------------------- 300 (1414)
T KOG1473|consen 301 -------------------------------------------------------------------------------- 300 (1414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhccccCCcccchhcccCCCchhhHhhcccccccCCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 000279 911 VAVEDFGASHLNQENIEIDESKPGESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMW 990 (1729)
Q Consensus 911 ~~~~~~~~~~~~~~~~eides~~Ge~wl~~L~e~eY~dLsveeRL~aL~aLcdl~Let~sIR~~LEerlE~a~aLkKq~r 990 (1729)
+.+.+|...+|.-||+||+||||++|+++++|..|...-+..
T Consensus 301 ------------------------------v~~~eY~~~pv~~klkILQ~L~Dq~l~~~s~R~e~~se~~~~-------- 342 (1414)
T KOG1473|consen 301 ------------------------------VVEDEYPYRPVSNKLKILQFLCDQFLTVNSLRDEIDSEGEIE-------- 342 (1414)
T ss_pred ------------------------------cccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccccee--------
Confidence 114467778999999999999999999999999987541100
Q ss_pred HHHHHHHHHhHHHhhhcccCCcccCcchhhhhcccccCCCCCCCcccc------CCCCCCCCCcccCcccccCccccccC
Q 000279 991 AEAQLDKSRLKEENITKLDFTPAMGSKAETHLASSAAEGGQSPLPVFV------DNKNEASPSLAEDQKPMFGSQVFQNH 1064 (1729)
Q Consensus 991 ~ea~edkrR~keE~~~k~~~~~~~~~K~e~~~~~~~~e~~~sp~~~~~------~~~~~~~p~~~~~~~~~~~~~~~~~~ 1064 (1729)
-...-+...+.....+.+++....+.|+.-.|..++. ..++-+...+.+++..+.+++
T Consensus 343 -----------~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~----- 406 (1414)
T KOG1473|consen 343 -----------YDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKN----- 406 (1414)
T ss_pred -----------ecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhc-----
Confidence 0001122223355677777777666665544433321 111222222222222222211
Q ss_pred CCCCccccccccCCCCCCcchhhhhhhhhhhHhhHHHHHHHHHHHHHHhhccccccCCccCCCCceeecccCCCCCCCCC
Q 000279 1065 LSEFPNERTVAVQDPSTGLDNLATQQHGYASKRSRSQLKAYIAHMAEEMYVYRSLPLGQDRRRNRYWQFATSASRNDPCS 1144 (1729)
Q Consensus 1065 ~~~~~~E~~~~~qd~~~~~~~~~~~~~~~~aek~~~Qlk~~i~~~~ee~~~~R~~pLGkDR~~NRYW~F~~s~s~~dp~~ 1144 (1729)
...+|..|+|.||+.+.||+. .
T Consensus 407 ------------------------------------------------~~~iR~~~iG~dr~gr~ywfi----------~ 428 (1414)
T KOG1473|consen 407 ------------------------------------------------VDSIRHTPIGRDRYGRKYWFI----------S 428 (1414)
T ss_pred ------------------------------------------------ccceeccCCCcCccccchhce----------e
Confidence 133599999999999988887 6
Q ss_pred CceEEEccCC--cEEEEcCHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHHHHhhccCccccC---------Cchhh
Q 000279 1145 GRIFVELHDG--TWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETSFKDKVRRNLQGIDTVG---------QSWTA 1213 (1729)
Q Consensus 1145 grIfVE~~DG--~W~yYdt~eeld~Ll~~Ld~rG~RE~~L~~~L~~~~~~I~~~M~~r~~~~~~~~---------~~~~~ 1213 (1729)
.||+||..|+ .| ||+|.-+|-.||..||.-=+ |..|...|-...+.|..+|.-.+..++... ++..+
T Consensus 429 rrl~Ie~~det~l~-yysT~pqly~ll~cLd~~~~-e~~L~d~i~~~~ee~~rqM~lT~~ltne~R~~~~f~~~~h~r~~ 506 (1414)
T KOG1473|consen 429 RRLRIEGMDETLLW-YYSTCPQLYHLLRCLDRTYV-EMYLCDGIWERREEIIRQMGLTEELTNELRGAVDFGEDPHGRLF 506 (1414)
T ss_pred eeeEEecCCCcEEE-EecCcHHHHHHHHHhchHHH-HHhhccchhhhHHHHHHhccchhhhhhhhhcccccccCCCccee
Confidence 7999999999 56 99999999999999985555 999999999999999999998876666555 22221
Q ss_pred hh-----------hhcccccCCCCCCCCCCCCCCccCCCCCcccc--ccchhhhcccchHHHHHHHHhhhhHHHHHHhhh
Q 000279 1214 IK-----------NEAAEMDVDPDFASSDSPSSTVCGLNSDTLET--SSSFRIELGRNEIEKKAALERFQDFQWWMWREC 1280 (1729)
Q Consensus 1214 ~~-----------~~~~~~~~~~~~~~~~sp~s~~~~~~~d~~~~--s~s~~iE~g~~~~e~~~~~~r~~~f~~w~w~~~ 1280 (1729)
+- |..-..+. +-+.+..+. +...+ |++..-| .-.|...+..+|++-. --+..
T Consensus 507 l~~~c~~~lv~~iq~~~da~l---------~e~~l~~i~-k~v~~~~S~s~~~e---E~~e~ck~is~~~d~p--~~n~~ 571 (1414)
T KOG1473|consen 507 LGRDCAVLLVLCIQVVEDAIL---------KEENLGDID-KVVLVLISASAHQE---EYVEICKAISQYWDLP--EGNLW 571 (1414)
T ss_pred eecchhhHHhhhhhhhhhhhh---------hHhhhcchH-hhhhhhhhcccchH---HHHHHHHHHhhccccc--ccchh
Confidence 10 00000000 000000000 01011 1111111 1334566777777665 22222
Q ss_pred ccccchhhhhccccccccccccccccccccCccCCCCCccccccc---cCCCcccccchhhhhhhhhccCCcccccCCCc
Q 000279 1281 FNSLSLCASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSCHRTFG---AVDKSSKFSEHSIQCEEKTKLGLRDIHVSDSS 1357 (1729)
Q Consensus 1281 ~~~~~l~a~k~Gkk~~~~~l~~C~~C~~~y~~~e~hC~~CH~tf~---~~d~e~~~~~h~~~c~~k~~~~~~~~~~~~~~ 1357 (1729)
+.+. -.+.++++.| .+.+++.-.....+.+...+.-|...+ ..++.++++..+. ....
T Consensus 572 ~~~e--~~~dqtf~~y--~ys~n~vse~~~~d~e~~dkk~~~~tkf~l~~nsd~~~~g~~~---------------t~gt 632 (1414)
T KOG1473|consen 572 RLRE--EGNDQTFMKY--YYSGNEVSEIFLTDSENADKKSHMQTKFALITNSDGVTAGNVT---------------TYGT 632 (1414)
T ss_pred hhhh--cccccchhhh--cccCCchhhccCCchhhhcccccccceecccccccceeccccc---------------cccc
Confidence 2222 4456666666 667778777788888888888888764 1123333332111 0011
Q ss_pred chHHHHHHHHHHHHHHhcCChhHHhhhhchhHHHHHHhhhccCCCHHHHHHHHHHHHhhhhhhccccccc
Q 000279 1358 LPLGIRLLKPLSAVIEAYIPPEALEASWTDERRKTWGMKLNMSSSAEEVLQLLTILESGIKRSYLSSNFE 1427 (1729)
Q Consensus 1358 lp~~l~~LK~~l~~iEa~lp~eAl~~~W~~~~rk~W~~~l~~ass~~el~q~l~~le~~ik~d~L~~~~~ 1427 (1729)
-.....++...|...++.+|...++..|-.- -|.|-..|..|-++.+|.-.|-.+.-+++-.-..+.||
T Consensus 633 ~~~~~~~~~~t~~~~lSniP~s~~n~~w~~~-tkg~~lavs~A~~~~el~s~t~~~d~s~~~~~~~~~ss 701 (1414)
T KOG1473|consen 633 GSQHKKLIARTLQQGLSNIPISYNNRKWPVY-TKGFELAVSAAADLAELSSETLEPDLSKRSNAFKAASS 701 (1414)
T ss_pred hhhcchHHHhhhhhhhccCchHhhhccchhh-ccchhhhhhccchHHHHHHhhcccchhhhhhhhccchh
Confidence 1224567778889999999999999999876 99999999999999999999999999999888888777
No 2
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.57 E-value=6.5e-16 Score=149.56 Aligned_cols=65 Identities=32% Similarity=0.553 Sum_probs=61.0
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccC
Q 000279 29 GQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1729)
Q Consensus 29 ~~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~ 93 (1729)
.++.||-||+||+.||.+||+.|..+|||++.+|++||.++.|++.+|||||||||+|.|++.+.
T Consensus 14 krKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr~ 78 (125)
T KOG0484|consen 14 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQERA 78 (125)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999997653
No 3
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.53 E-value=2.2e-14 Score=157.23 Aligned_cols=73 Identities=30% Similarity=0.536 Sum_probs=66.5
Q ss_pred CCCCCCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccCCCc
Q 000279 24 NHSNEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPK 96 (1729)
Q Consensus 24 ~~s~~~~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~~~~ 96 (1729)
....+++|.|++||.++..||..|++.|+++.|+...+|++||..||||.+||+|||||||.|.||..+.+..
T Consensus 114 ~~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g~~ 186 (245)
T KOG0850|consen 114 RPNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQGSG 186 (245)
T ss_pred ccCCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcCCC
Confidence 3345677889999999999999999999999999999999999999999999999999999999998775443
No 4
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.52 E-value=2.1e-14 Score=154.97 Aligned_cols=62 Identities=31% Similarity=0.474 Sum_probs=59.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcc
Q 000279 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEK 91 (1729)
Q Consensus 30 ~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~ 91 (1729)
.++||.||+|+..|+..||..|...+|++..+|..||.+|.|++.||+|||||||.||||+-
T Consensus 102 ~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~ 163 (268)
T KOG0485|consen 102 DRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQY 163 (268)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999954
No 5
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.49 E-value=4.8e-14 Score=163.17 Aligned_cols=66 Identities=26% Similarity=0.525 Sum_probs=61.1
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccC
Q 000279 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1729)
Q Consensus 28 ~~~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~ 93 (1729)
...++||+|..||..|+.+||+.|.+++|++.++|++||..|+||++||||||||||.|+||++..
T Consensus 149 ~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~d 214 (307)
T KOG0842|consen 149 GKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKD 214 (307)
T ss_pred ccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhh
Confidence 345778889999999999999999999999999999999999999999999999999999996543
No 6
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.45 E-value=1.1e-13 Score=162.93 Aligned_cols=64 Identities=34% Similarity=0.550 Sum_probs=61.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccC
Q 000279 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1729)
Q Consensus 30 ~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~ 93 (1729)
+|+|+.||.||..||..||+.|++++|++..+|.+||..||||+.||++||||||+||||+...
T Consensus 170 kK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 170 KKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred cccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 6888899999999999999999999999999999999999999999999999999999997755
No 7
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.42 E-value=9.6e-14 Score=160.59 Aligned_cols=69 Identities=36% Similarity=0.611 Sum_probs=63.1
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccCCCc
Q 000279 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPK 96 (1729)
Q Consensus 28 ~~~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~~~~ 96 (1729)
.+++.||.||.||..||.+||+.|..|+|++...|.+||..|.|+|+||+|||||||+||||.......
T Consensus 155 ~~~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~~~ 223 (261)
T KOG0489|consen 155 TGGKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAKSS 223 (261)
T ss_pred ccCCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccc
Confidence 344678999999999999999999999999999999999999999999999999999999996655444
No 8
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.41 E-value=4e-13 Score=147.08 Aligned_cols=69 Identities=33% Similarity=0.535 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccCC
Q 000279 26 SNEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1729)
Q Consensus 26 s~~~~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~~ 94 (1729)
+...+|.||.||+||..||.+||.+|+.+.||++.+|++||.+|+|.+.+|||||.|||+|+|+++...
T Consensus 31 ~~~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 31 SSGPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred CccchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 345568899999999999999999999999999999999999999999999999999999999977654
No 9
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.40 E-value=1.2e-13 Score=146.39 Aligned_cols=63 Identities=35% Similarity=0.564 Sum_probs=60.0
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccC
Q 000279 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1729)
Q Consensus 31 k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~ 93 (1729)
+.||.||.||..||..||..|+.++|....+|+.||..|+|++.||+|||||||+|.||.+..
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e 163 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQE 163 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999996543
No 10
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=99.40 E-value=3e-13 Score=123.51 Aligned_cols=59 Identities=58% Similarity=0.940 Sum_probs=55.5
Q ss_pred hhhhhhhhhHHHHHhhhhccccCCCCHHHHHHHHhcCChh-HHHHHHHHHHHHHHhChhh
Q 000279 543 ENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHDHESR-LLGEIHLALLKSIIKDIED 601 (1729)
Q Consensus 543 e~vg~LL~VweFL~~F~~~L~LspfTLddf~~AL~~~ds~-LL~eiH~aLLk~ll~d~ed 601 (1729)
++|+++||||+||++|+++|+|+|||||+|++||.+.++. ||.|||++||++|+++.+|
T Consensus 2 ~~~~~~L~v~~Fl~~F~~~L~L~~ftlddf~~AL~~~~~~~ll~ei~~~LL~~l~~~~~d 61 (61)
T PF02791_consen 2 EAFGDLLMVWEFLNTFGEVLGLSPFTLDDFEQALLCNDPSGLLAEIHCALLKALLADEED 61 (61)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHcCCCcchhHHHHHHHHHHHHHhccCC
Confidence 6799999999999999999999999999999999987665 9999999999999999874
No 11
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.37 E-value=2.3e-13 Score=146.40 Aligned_cols=68 Identities=34% Similarity=0.511 Sum_probs=61.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccCCCcc
Q 000279 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPKK 97 (1729)
Q Consensus 30 ~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~~~~q 97 (1729)
+..|++||.||.+||..||+.|...+|+++.+|.+++..|.||+.||+|||||||+|.||.+.....+
T Consensus 142 k~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQeae~Ek 209 (246)
T KOG0492|consen 142 KPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQEAELEK 209 (246)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999977554443
No 12
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=99.33 E-value=1.2e-12 Score=120.20 Aligned_cols=59 Identities=44% Similarity=0.835 Sum_probs=55.3
Q ss_pred hhhhhhhhhhHHHHHhhhhccccCCCC--HHHHHHHHhcCChh-HHHHHHHHHHHHHHhChh
Q 000279 542 EENVGNLLMVWRFFITFADVLGLWPFT--LDEFVQAFHDHESR-LLGEIHLALLKSIIKDIE 600 (1729)
Q Consensus 542 ~e~vg~LL~VweFL~~F~~~L~LspfT--Lddf~~AL~~~ds~-LL~eiH~aLLk~ll~d~e 600 (1729)
++.|+++||||+||++|+++|+|+||+ ||+|++||.+.++. +|.+||++||++|+++++
T Consensus 1 ~~~~~d~l~V~eFl~~F~~~L~L~~f~~~l~~f~~Al~~~~~~~ll~ei~~~LL~~i~~d~~ 62 (63)
T smart00571 1 NEAFGDLLMVYEFLRSFGKVLGLSPFRATLEDFIAALKCRDQNGLLTEVHVVLLRAILKDEG 62 (63)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHhcCCcchHHHHHHHHHHHHHHhCCC
Confidence 367999999999999999999999999 99999999987775 999999999999999875
No 13
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.33 E-value=6.1e-13 Score=146.74 Aligned_cols=63 Identities=35% Similarity=0.565 Sum_probs=57.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccCC
Q 000279 32 GKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1729)
Q Consensus 32 ~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~~ 94 (1729)
+|+-||.||..|+..||+.|+..+||+...|+.||.++.|.+.+|||||||||+||||.++.-
T Consensus 141 RRh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~w 203 (332)
T KOG0494|consen 141 RRHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRW 203 (332)
T ss_pred cccccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhc
Confidence 334499999999999999999999999999999999999999999999999999999965543
No 14
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.30 E-value=1.7e-12 Score=150.56 Aligned_cols=65 Identities=37% Similarity=0.599 Sum_probs=60.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccCC
Q 000279 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1729)
Q Consensus 30 ~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~~ 94 (1729)
++.||||..+|..|+.+||+.|..|.|++..-|-+|++.|+||++||+|||||||+|.||..+..
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~ 297 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNREN 297 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhh
Confidence 56788999999999999999999999999999999999999999999999999999999976533
No 15
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.30 E-value=6.9e-12 Score=140.95 Aligned_cols=60 Identities=37% Similarity=0.597 Sum_probs=57.7
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhc
Q 000279 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKE 90 (1729)
Q Consensus 31 k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~ 90 (1729)
+-||.||.||.+||..||+.|-+..|-+.+.|.+||..|+|.+..|+|||||||+|+||+
T Consensus 180 qmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQ 239 (408)
T KOG0844|consen 180 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 239 (408)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhh
Confidence 447899999999999999999999999999999999999999999999999999999994
No 16
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.23 E-value=3.6e-12 Score=114.17 Aligned_cols=57 Identities=46% Similarity=0.733 Sum_probs=55.3
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhh
Q 000279 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1729)
Q Consensus 33 rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR 89 (1729)
|++|+.||..|+.+|+..|..++||+..++..||..|||+..+|++||||||.++||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 578999999999999999999999999999999999999999999999999999986
No 17
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.22 E-value=1.7e-11 Score=137.01 Aligned_cols=66 Identities=38% Similarity=0.591 Sum_probs=62.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccCCCcc
Q 000279 32 GKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPKK 97 (1729)
Q Consensus 32 ~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~~~~q 97 (1729)
-||+||+||..||+.|+.+|+..+.|....|++|+..+||..++|||||||||+|.||.++...++
T Consensus 167 nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~ 232 (383)
T KOG4577|consen 167 NKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRT 232 (383)
T ss_pred cCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchh
Confidence 478999999999999999999999999999999999999999999999999999999988766654
No 18
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.4e-09 Score=134.01 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=13.9
Q ss_pred ccCCCchh-hHhhcccccccCCC
Q 000279 929 DESKPGES-WIQGLAEGDYSHLS 950 (1729)
Q Consensus 929 des~~Ge~-wl~~L~e~eY~dLs 950 (1729)
++|+.||| ||.|=..|.+.=+.
T Consensus 721 ~esq~aEPGWlaGel~gktGWFP 743 (1118)
T KOG1029|consen 721 FESQAAEPGWLAGELRGKTGWFP 743 (1118)
T ss_pred ehhccCCcccccceeccccCcCc
Confidence 67777776 67766666554443
No 19
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.20 E-value=4.8e-12 Score=140.78 Aligned_cols=65 Identities=32% Similarity=0.556 Sum_probs=59.3
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccCCC
Q 000279 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPP 95 (1729)
Q Consensus 31 k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~~~ 95 (1729)
-+-|-|.++|..|..+||+.|.-++|.++..+.+||..|||++|||+|||||||+|+||..+...
T Consensus 198 TkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 198 TKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKR 262 (317)
T ss_pred cccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHH
Confidence 34456889999999999999999999999999999999999999999999999999999766553
No 20
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.18 E-value=2.6e-11 Score=109.21 Aligned_cols=53 Identities=17% Similarity=0.326 Sum_probs=51.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCC----CCHHHHHHHHHHhCCCccceeeccccch
Q 000279 32 GKPKRQMKTPFQLETLEKAYASETY----PSESTRAELSEKLGLSDRQLQMWFCHRR 84 (1729)
Q Consensus 32 ~rr~Rt~fT~~QL~~Le~~F~~~~y----Ps~~~ReeLA~~LgLserqVqVWFQNRR 84 (1729)
+||.||.||..|+..|+..|..++| |+..+|.+||..|||++++|||||||.+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 3789999999999999999999999 9999999999999999999999999975
No 21
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.09 E-value=1.6e-10 Score=136.34 Aligned_cols=62 Identities=26% Similarity=0.476 Sum_probs=59.4
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhccc
Q 000279 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1729)
Q Consensus 31 k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~ 92 (1729)
|+||+||+|+......||.+|..|+.|+..++.+||.+|+|...+|+|||||||.|.||...
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRITP 354 (398)
T ss_pred cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCCC
Confidence 78899999999999999999999999999999999999999999999999999999999443
No 22
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.09 E-value=2.1e-11 Score=127.57 Aligned_cols=63 Identities=37% Similarity=0.605 Sum_probs=59.2
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccC
Q 000279 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1729)
Q Consensus 31 k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~ 93 (1729)
++++.||+|+..||..|++.|+.++|++.++|.+||..|+|+++||+.||||||+|.||+.+.
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~ 161 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRN 161 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999999999999999999999999999996543
No 23
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.08 E-value=8.8e-10 Score=149.66 Aligned_cols=56 Identities=21% Similarity=0.147 Sum_probs=47.6
Q ss_pred chhhHhhcccccccCCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 000279 934 GESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQM 989 (1729)
Q Consensus 934 Ge~wl~~L~e~eY~dLsveeRL~aL~aLcdl~Let~sIR~~LEerlE~a~aLkKq~ 989 (1729)
++..++.|.+..|.+|...+++.+|..||+.++.+..++++|+++.+....|+++.
T Consensus 650 ~~~~~~kl~~~~v~dl~~~~~~~il~~~~~~l~~~~e~~d~i~~~~~~~~eLk~~~ 705 (1404)
T KOG1245|consen 650 HEELMEKLHTLLVFDLRAEEKDKILRQLCQRLLMLGEVVDHIEDRQQLTRELKQEI 705 (1404)
T ss_pred hhhhhhhHHHHHHHhhhhhhhhhHHHHHHHHhccchhhhhhhhhHHHHHHHHhhhh
Confidence 45678899999999999999999999999999999999999999554444555443
No 24
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.07 E-value=5.2e-11 Score=131.76 Aligned_cols=57 Identities=37% Similarity=0.622 Sum_probs=55.9
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhh
Q 000279 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1729)
Q Consensus 33 rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR 89 (1729)
||+||.||.+||..|+..|+.|+|++...|++||.+|||.+.||+|||||+|+|-||
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKK 303 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKK 303 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhh
Confidence 678999999999999999999999999999999999999999999999999999999
No 25
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.05 E-value=9.4e-11 Score=133.53 Aligned_cols=65 Identities=31% Similarity=0.522 Sum_probs=61.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccCC
Q 000279 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1729)
Q Consensus 30 ~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~~ 94 (1729)
+|+||-||.||.+||..||..|++|.||+..+|++||..++|++.+|+|||.|||+||||+++..
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrErN~ 174 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQ 174 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhhhH
Confidence 37788999999999999999999999999999999999999999999999999999999966543
No 26
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.01 E-value=1.7e-10 Score=102.60 Aligned_cols=56 Identities=52% Similarity=0.798 Sum_probs=52.9
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhh
Q 000279 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDK 88 (1729)
Q Consensus 33 rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~K 88 (1729)
++.|+.|+..|+.+|+..|..++||+..++..||..+||+..+|++||+|||.+.+
T Consensus 1 ~k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 1 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 35788899999999999999999999999999999999999999999999998864
No 27
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=98.98 E-value=3.3e-10 Score=93.50 Aligned_cols=37 Identities=46% Similarity=0.744 Sum_probs=32.1
Q ss_pred ccccCCccCCCCceeecccCCCCCCCCCCceEEEccC
Q 000279 1117 RSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHD 1153 (1729)
Q Consensus 1117 R~~pLGkDR~~NRYW~F~~s~s~~dp~~grIfVE~~D 1153 (1729)
|.+|||+||++||||||..+...+...+++||||..+
T Consensus 1 R~~pLG~DR~~NrYwwf~~s~~~~~~~~~~~~v~~~~ 37 (38)
T PF15613_consen 1 RLKPLGKDRYGNRYWWFSSSSSNSQYYNGGRFVEQGP 37 (38)
T ss_pred CcccccccCCCceEEEEecccccCCCCCceEEEEeCC
Confidence 7899999999999999977666667779999999765
No 28
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=98.98 E-value=2.8e-10 Score=101.97 Aligned_cols=57 Identities=47% Similarity=0.803 Sum_probs=54.5
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhh
Q 000279 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1729)
Q Consensus 33 rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR 89 (1729)
++.|+.|+..|+.+|+..|..++||+..++..||..+||+..+|++||+|||.+.++
T Consensus 1 ~~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 357889999999999999999999999999999999999999999999999999887
No 29
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=98.97 E-value=4.2e-10 Score=120.68 Aligned_cols=67 Identities=34% Similarity=0.550 Sum_probs=61.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccCCCc
Q 000279 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPK 96 (1729)
Q Consensus 30 ~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~~~~ 96 (1729)
...+++|++.|..|+.+|+..|..+|||+..+|..|+..|+|+++-|||||||||++.|+.......
T Consensus 49 ~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~~ 115 (156)
T COG5576 49 SPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVE 115 (156)
T ss_pred CcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccchh
Confidence 4567889999999999999999999999999999999999999999999999999999996554433
No 30
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=98.91 E-value=3.2e-10 Score=122.99 Aligned_cols=63 Identities=30% Similarity=0.527 Sum_probs=59.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhccc
Q 000279 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1729)
Q Consensus 30 ~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~ 92 (1729)
++++..|.+|+-.||..|+..|.+.+|+-..+|.+||..+|+++.||+|||||||+||||+..
T Consensus 165 G~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhA 227 (288)
T KOG0847|consen 165 GQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHA 227 (288)
T ss_pred ccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhc
Confidence 467788999999999999999999999999999999999999999999999999999999653
No 31
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=98.85 E-value=1e-09 Score=121.38 Aligned_cols=60 Identities=35% Similarity=0.556 Sum_probs=55.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcc
Q 000279 32 GKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEK 91 (1729)
Q Consensus 32 ~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~ 91 (1729)
...++.+||..|+..||..|..+.|+....+..||..|||.++||.||||||||+||..+
T Consensus 50 ~~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kq 109 (198)
T KOG0483|consen 50 GKGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQ 109 (198)
T ss_pred cccccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchh
Confidence 344566799999999999999999999999999999999999999999999999999865
No 32
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.81 E-value=5.5e-09 Score=118.46 Aligned_cols=64 Identities=31% Similarity=0.386 Sum_probs=60.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhccc
Q 000279 29 GQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1729)
Q Consensus 29 ~~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~ 92 (1729)
..++|+.|+.|+..|+.+|+++|..+|||+...|+.||..+++++..|||||||||+||+++..
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 3477889999999999999999999999999999999999999999999999999999999664
No 33
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=98.78 E-value=4.7e-09 Score=89.65 Aligned_cols=35 Identities=43% Similarity=0.694 Sum_probs=34.4
Q ss_pred EEEEcCHHHHHHHHHhc-CcCCcchHHHHHHHHHHH
Q 000279 1156 WRLIDTVEAFDALLSSL-DARGTRESHLRIMLQKIE 1190 (1729)
Q Consensus 1156 W~yYdt~eeld~Ll~~L-d~rG~RE~~L~~~L~~~~ 1190 (1729)
|+||+++++||+||.|| ||||+||+.|+++|.+.+
T Consensus 1 W~~~~~~e~ld~L~~aL~~prG~RE~~L~~~L~~~~ 36 (46)
T PF15614_consen 1 WGYYDDPEELDELLKALENPRGKRESKLKKELDKHR 36 (46)
T ss_pred CccccCHHHHHHHHHHHcCcccHhHHHHHHHHHHHh
Confidence 99999999999999999 999999999999999988
No 34
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.64 E-value=5.1e-08 Score=117.74 Aligned_cols=67 Identities=30% Similarity=0.562 Sum_probs=61.3
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccCC
Q 000279 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1729)
Q Consensus 28 ~~~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~~ 94 (1729)
..++.+|.||+|++.|+..|+..|..++||++..|++||.++++++..|+|||+|||++++|.....
T Consensus 172 ~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~~~ 238 (354)
T KOG0849|consen 172 LQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHRDC 238 (354)
T ss_pred ccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhccccc
Confidence 3346677899999999999999999999999999999999999999999999999999999976443
No 35
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.59 E-value=2.1e-08 Score=112.91 Aligned_cols=65 Identities=32% Similarity=0.522 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcc
Q 000279 27 NEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEK 91 (1729)
Q Consensus 27 ~~~~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~ 91 (1729)
-.++.+||+||++....-..||..|+.+|.|+......||.+|.|...+|+|||||.|+|.||.+
T Consensus 304 ~~~~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 304 LPGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred cCccccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhh
Confidence 34557789999999999999999999999999999999999999999999999999999999943
No 36
>PTZ00121 MAEBL; Provisional
Probab=98.46 E-value=8e-06 Score=107.02 Aligned_cols=34 Identities=24% Similarity=0.113 Sum_probs=21.5
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCccCchhhhccCCCCc
Q 000279 184 REDGPILGMEFDSLPPDAFGAPIAGSSEQQKRSGHPY 220 (1729)
Q Consensus 184 redgp~lg~efdPlpp~af~~pi~~~~~q~k~P~~~~ 220 (1729)
+++.=.|+|-|+-|.-+.|.|.|= +...-||.++
T Consensus 803 ~~~~iT~~Mknp~lIknL~DCSiy---SyClgpC~e~ 836 (2084)
T PTZ00121 803 REDNITLPMKNPGLIKNLFDCSIY---SYCLGPCLEG 836 (2084)
T ss_pred CCCccccCcCChHhhcCHhhhhHH---HhhcCccCCC
Confidence 334445677777777777777773 3455666654
No 37
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=98.42 E-value=2.4e-07 Score=81.54 Aligned_cols=48 Identities=33% Similarity=0.414 Sum_probs=41.0
Q ss_pred hhhHhhcccccccCCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 000279 935 ESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAA 982 (1729)
Q Consensus 935 e~wl~~L~e~eY~dLsveeRL~aL~aLcdl~Let~sIR~~LEerlE~a 982 (1729)
..|+..|..++|++|++++||.||++||+.++++.+||++|++|.|.+
T Consensus 3 ~~~~~~l~~~~y~~L~~~~kl~iL~~L~~~~l~s~~vr~~i~~~~e~~ 50 (50)
T PF15612_consen 3 PGLAPPLETGEYYELSPEEKLEILRALCDQLLSSSSVRNEIEEREEEQ 50 (50)
T ss_dssp GGG-CCCCCSTCCCS-HHHHHHHHHHHHHHHCC-CCHHHHHHHHHT--
T ss_pred hhhhHHHHcCCcccCCHHHHHHHHHHHHHHHcCcHHHHHHHHHhhccC
Confidence 358899999999999999999999999999999999999999998753
No 38
>PTZ00121 MAEBL; Provisional
Probab=98.29 E-value=3.4e-05 Score=101.46 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=8.6
Q ss_pred hhhhhhhhccCCc
Q 000279 1337 SIQCEEKTKLGLR 1349 (1729)
Q Consensus 1337 ~~~c~~k~~~~~~ 1349 (1729)
--.|..++=.+|.
T Consensus 1993 YynCmk~EF~dp~ 2005 (2084)
T PTZ00121 1993 YYDCMKEEFADKD 2005 (2084)
T ss_pred HHhhHHhhccCcc
Confidence 3567777766665
No 39
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=98.11 E-value=1.6e-06 Score=81.86 Aligned_cols=68 Identities=37% Similarity=0.517 Sum_probs=56.3
Q ss_pred cchhHHHHHHHhhhcCCCcchhHHHHHHHhhccccCCCCCCchhhHHHhhccccc----chhccCCCcccccCC
Q 000279 724 GTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTK----LFERIAPSTYCVRPA 793 (1729)
Q Consensus 724 gTvk~a~f~vls~~g~~gl~v~ela~~iqk~glrd~~ts~t~ea~i~~alsrd~~----Lfer~apsty~~r~~ 793 (1729)
+|++-||++||...| +.|+..||.+.|+..||-+.. +|||++.|+++|.+|++ .|.++.+++|+||.+
T Consensus 1 mt~~eaa~~vL~~~~-~pm~~~eI~~~i~~~~~~~~~-~k~p~~~i~a~ly~~~~~~d~~F~~vg~~~~~L~~w 72 (72)
T PF05066_consen 1 MTFKEAAYEVLEEAG-RPMTFKEIWEEIQERGLYKKS-GKTPEATIAAQLYTDIKNEDSRFVKVGPGRWGLRSW 72 (72)
T ss_dssp S-HHHHHHHHHHHH--S-EEHHHHHHHHHHHHTS----GGGGGHHHH-HHHHHHH-T-SS-EESSSSEEE-GGG
T ss_pred CCHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCCCCcc-cCCHHHHHHHHHHHHcccCCCCEEEeCCCcEEeeeC
Confidence 588999999999999 999999999999999998887 99999999999999998 999999999999854
No 40
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.06 E-value=0.00013 Score=97.89 Aligned_cols=11 Identities=18% Similarity=0.066 Sum_probs=4.5
Q ss_pred HHHHHHHhhCC
Q 000279 171 AIACVEAQLGE 181 (1729)
Q Consensus 171 aI~~ve~qlge 181 (1729)
++.+.+=..|.
T Consensus 230 G~ILYELLTGk 240 (1021)
T PTZ00266 230 GCIIYELCSGK 240 (1021)
T ss_pred HHHHHHHHHCC
Confidence 33344444443
No 41
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.01 E-value=2e-05 Score=89.68 Aligned_cols=51 Identities=31% Similarity=0.503 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhh
Q 000279 39 KTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1729)
Q Consensus 39 fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR 89 (1729)
|...-...|...|.+++||+..++.+||..+||+..||-.||.|||+++|-
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhh
Confidence 445557899999999999999999999999999999999999999999995
No 42
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=98.01 E-value=1.3e-05 Score=90.00 Aligned_cols=57 Identities=30% Similarity=0.539 Sum_probs=54.3
Q ss_pred CCCCCcCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhh
Q 000279 33 KPKRQMKTPFQLETLEKAY---ASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1729)
Q Consensus 33 rr~Rt~fT~~QL~~Le~~F---~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR 89 (1729)
+|+|..|+..-.++|+..| ..+|||+...+++||.++|++..||..||.|.|.+.||
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK 248 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKK 248 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhh
Confidence 6788999999999999999 47999999999999999999999999999999999998
No 43
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=97.97 E-value=0.00032 Score=87.45 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=10.3
Q ss_pred HHHHHHhCCCccceeecc
Q 000279 63 AELSEKLGLSDRQLQMWF 80 (1729)
Q Consensus 63 eeLA~~LgLserqVqVWF 80 (1729)
+-+...+++...+.-+.|
T Consensus 41 e~~t~~~N~~~d~~~~d~ 58 (811)
T KOG4364|consen 41 ESQTSSLNLEMDGLFDDF 58 (811)
T ss_pred ccchhhhhcccchhHHHH
Confidence 334555666666666666
No 44
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.0016 Score=82.40 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=8.5
Q ss_pred CcccccCcHHHHHHH
Q 000279 339 SDGQTFNNDAEQRME 353 (1729)
Q Consensus 339 ~~~~~~~~ke~~r~E 353 (1729)
....+|++|.+.-.+
T Consensus 309 P~~~TFEDKrkeNy~ 323 (1118)
T KOG1029|consen 309 PAPVTFEDKRKENYE 323 (1118)
T ss_pred CCCcchhhhhHHhHh
Confidence 334568886554443
No 45
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=97.67 E-value=0.002 Score=80.67 Aligned_cols=8 Identities=13% Similarity=0.177 Sum_probs=3.1
Q ss_pred hhHHHHHH
Q 000279 726 VKFAAFHV 733 (1729)
Q Consensus 726 vk~a~f~v 733 (1729)
+|.-+||.
T Consensus 479 mKaKlLqF 486 (811)
T KOG4364|consen 479 MKAKLLQF 486 (811)
T ss_pred hHHHHhhh
Confidence 34333333
No 46
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.30 E-value=0.02 Score=65.54 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000279 350 QRMEKKRKCDEARIAREVEA 369 (1729)
Q Consensus 350 ~r~E~~rk~eeer~~ke~e~ 369 (1729)
.+.++.++.+-++.++++++
T Consensus 277 kraeerrqieterlrqeeee 296 (445)
T KOG2891|consen 277 KRAEERRQIETERLRQEEEE 296 (445)
T ss_pred HHHHHHhhhhHHHHhhhHhh
Confidence 34455555555555554443
No 47
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.23 E-value=0.0002 Score=81.48 Aligned_cols=65 Identities=35% Similarity=0.571 Sum_probs=60.4
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhccc
Q 000279 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1729)
Q Consensus 28 ~~~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~ 92 (1729)
...+.++.|+.++..|+..|...|..++||+...+..|+..+|++.+.|++||||+|++.++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 149 SNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred CccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 34577889999999999999999999999999999999999999999999999999999999544
No 48
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=97.17 E-value=0.054 Score=59.49 Aligned_cols=10 Identities=40% Similarity=0.617 Sum_probs=6.7
Q ss_pred CCCCCCCCCC
Q 000279 326 SHPIFGTEDP 335 (1729)
Q Consensus 326 ~~~~~~~~~p 335 (1729)
..+++|+.||
T Consensus 12 ~K~saGTtda 21 (171)
T PF05672_consen 12 GKPSAGTTDA 21 (171)
T ss_pred CCCCCCCCCH
Confidence 4567777766
No 49
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=96.85 E-value=0.055 Score=62.14 Aligned_cols=16 Identities=50% Similarity=1.068 Sum_probs=6.8
Q ss_pred hCCCccC--CCCcCCCCC
Q 000279 179 LGEPLRE--DGPILGMEF 194 (1729)
Q Consensus 179 lge~~re--dgp~lg~ef 194 (1729)
+|-|||+ .|-+.|+.|
T Consensus 195 icdplr~~mn~kisgiq~ 212 (445)
T KOG2891|consen 195 ICDPLREEMNGKISGIQF 212 (445)
T ss_pred ccchhHHHhcCcccccee
Confidence 3444443 344444444
No 50
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=96.83 E-value=0.00025 Score=59.99 Aligned_cols=34 Identities=35% Similarity=0.756 Sum_probs=28.9
Q ss_pred hcCCCCHHHHHHHHHHhCCCccceeeccccchhh
Q 000279 53 SETYPSESTRAELSEKLGLSDRQLQMWFCHRRLK 86 (1729)
Q Consensus 53 ~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK 86 (1729)
.+|||+..++..||..+||+..||..||-|.|.+
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 5799999999999999999999999999998854
No 51
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=96.78 E-value=0.00097 Score=82.77 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=54.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhh
Q 000279 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKD 87 (1729)
Q Consensus 30 ~k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~ 87 (1729)
-+.||+|.+||..|...|...|+.+++|+..+.+.|+.+|+|....|..||-|-|.+.
T Consensus 418 ~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 418 LQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred ccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 3567889999999999999999999999999999999999999999999999987664
No 52
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.094 Score=67.46 Aligned_cols=11 Identities=36% Similarity=0.437 Sum_probs=4.7
Q ss_pred cceeeccCCCC
Q 000279 1466 DASIMYVKPEK 1476 (1729)
Q Consensus 1466 Da~I~y~~~~~ 1476 (1729)
|+-..|...-|
T Consensus 911 D~f~~y~e~~k 921 (1064)
T KOG1144|consen 911 DAFTKYIEEIK 921 (1064)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 53
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=96.01 E-value=0.69 Score=60.48 Aligned_cols=11 Identities=45% Similarity=0.688 Sum_probs=8.4
Q ss_pred CcCCCCCCCCC
Q 000279 188 PILGMEFDSLP 198 (1729)
Q Consensus 188 p~lg~efdPlp 198 (1729)
-||-++|+||-
T Consensus 394 ~iLEveF~PL~ 404 (988)
T KOG2072|consen 394 NILEVEFHPLK 404 (988)
T ss_pred HHHHhcCCHHH
Confidence 56778888874
No 54
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=95.76 E-value=0.34 Score=61.49 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=29.7
Q ss_pred CCchhhHHHHHHHHHHHhhCCCccCC--CCcCCCC-----CCCCCCCCCCCCcc
Q 000279 161 ESQQSIMELRAIACVEAQLGEPLRED--GPILGME-----FDSLPPDAFGAPIA 207 (1729)
Q Consensus 161 ~p~~~~~e~~aI~~ve~qlge~~red--gp~lg~e-----fdPlpp~af~~pi~ 207 (1729)
.|...+--...|.-+-.-||+.+..+ |++ |-. +||--...|++-|-
T Consensus 18 gp~~~~~t~~~i~~iG~~la~~~~~~~~~~~-~~y~ii~~vd~~~~~~~~ADi~ 70 (489)
T PF05262_consen 18 GPHASIETAQQIRGIGSGLAEALKNGRAGSY-GRYYIIHAVDPEEKKKLDADIF 70 (489)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhcCCCCcc-CcEEEEEecCcccccCCCCcEE
Confidence 34445566688999999999888643 333 222 36666677777764
No 55
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=95.74 E-value=0.1 Score=64.72 Aligned_cols=11 Identities=18% Similarity=0.452 Sum_probs=5.5
Q ss_pred CCCCCCCCCcc
Q 000279 197 LPPDAFGAPIA 207 (1729)
Q Consensus 197 lpp~af~~pi~ 207 (1729)
.||++-..-..
T Consensus 365 vpPapkeSSTs 375 (940)
T KOG4661|consen 365 VPPAPKESSTS 375 (940)
T ss_pred CCCCCcccccc
Confidence 36655554443
No 56
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=95.58 E-value=0.51 Score=59.95 Aligned_cols=6 Identities=50% Similarity=0.429 Sum_probs=2.5
Q ss_pred CCCCHH
Q 000279 565 WPFTLD 570 (1729)
Q Consensus 565 spfTLd 570 (1729)
.|.||+
T Consensus 426 d~~tLe 431 (489)
T PF05262_consen 426 DPETLE 431 (489)
T ss_pred Ccccce
Confidence 344443
No 57
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.3 Score=63.19 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=12.8
Q ss_pred HhhhccCCCHHHHHHHHHHHHhhhhh
Q 000279 1394 GMKLNMSSSAEEVLQLLTILESGIKR 1419 (1729)
Q Consensus 1394 ~~~l~~ass~~el~q~l~~le~~ik~ 1419 (1729)
++++-.|..++-|+-+.+.+..-||+
T Consensus 897 gVkIF~adiIYhLfD~f~~y~e~~ke 922 (1064)
T KOG1144|consen 897 GVKIFCADIIYHLFDAFTKYIEEIKE 922 (1064)
T ss_pred CceeeehhHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555554444444
No 58
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.43 E-value=0.36 Score=62.01 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=19.1
Q ss_pred cccCCCCHHHHHHHHhc-CChhHHH----HHHHHH
Q 000279 562 LGLWPFTLDEFVQAFHD-HESRLLG----EIHLAL 591 (1729)
Q Consensus 562 L~LspfTLddf~~AL~~-~ds~LL~----eiH~aL 591 (1729)
..|+...+.+|-.+|.. -|-+||. |+|.-|
T Consensus 1065 YDl~~wkyaeLRDtINTS~DieLL~ACreEFhRRL 1099 (1259)
T KOG0163|consen 1065 YDLSKWKYAELRDTINTSCDIELLEACREEFHRRL 1099 (1259)
T ss_pred cccccccHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 45667777888888873 4556664 455543
No 59
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=95.29 E-value=0.021 Score=77.09 Aligned_cols=61 Identities=30% Similarity=0.534 Sum_probs=57.3
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcc
Q 000279 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEK 91 (1729)
Q Consensus 31 k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~ 91 (1729)
.+++.||.++..||..|...|....||.....+-|-..+++..++|+|||||-|+|.|+..
T Consensus 902 ~r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~ 962 (1406)
T KOG1146|consen 902 GRRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAK 962 (1406)
T ss_pred hhhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhh
Confidence 3577899999999999999999999999999999999999999999999999999999943
No 60
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.22 E-value=0.39 Score=61.65 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=9.4
Q ss_pred hhhccCCccHHHHHHHHHHHh
Q 000279 641 WQQLLNPLTWHEIFRQLALSA 661 (1729)
Q Consensus 641 w~~~Ld~lTWpEILRq~l~a~ 661 (1729)
|..|+|. +=|.||.-+-+
T Consensus 1172 WyaHFdG---q~I~RQm~l~~ 1189 (1259)
T KOG0163|consen 1172 WYAHFDG---QWIARQMELHP 1189 (1259)
T ss_pred EEEecCc---HHHHhhheecC
Confidence 5555543 34677764443
No 61
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=95.10 E-value=1.6 Score=48.35 Aligned_cols=9 Identities=0% Similarity=0.261 Sum_probs=3.6
Q ss_pred CcHHHHHHH
Q 000279 345 NNDAEQRME 353 (1729)
Q Consensus 345 ~~ke~~r~E 353 (1729)
..++..++.
T Consensus 20 daEEAtkiL 28 (171)
T PF05672_consen 20 DAEEATKIL 28 (171)
T ss_pred CHHHHHHHH
Confidence 333444443
No 62
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=7.5 Score=48.26 Aligned_cols=9 Identities=44% Similarity=0.427 Sum_probs=4.5
Q ss_pred CccchhHHH
Q 000279 722 TPGTVKFAA 730 (1729)
Q Consensus 722 ~pgTvk~a~ 730 (1729)
.|||=|..+
T Consensus 392 PPGTGKTm~ 400 (630)
T KOG0742|consen 392 PPGTGKTMF 400 (630)
T ss_pred CCCCCchHH
Confidence 455555443
No 63
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=92.94 E-value=1.1 Score=56.60 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhCC
Q 000279 168 ELRAIACVEAQLGE 181 (1729)
Q Consensus 168 e~~aI~~ve~qlge 181 (1729)
-.++|+.|+.-||+
T Consensus 29 l~a~~as~~~~l~~ 42 (591)
T KOG2412|consen 29 LVAEIASVEKKLNG 42 (591)
T ss_pred HHHHhhhhhhhhcc
Confidence 35677777776763
No 64
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=92.56 E-value=8.9 Score=45.88 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=5.6
Q ss_pred HHHHHHHHHhCC
Q 000279 652 EIFRQLALSAGF 663 (1729)
Q Consensus 652 EILRq~l~a~G~ 663 (1729)
+|-|.|+.+.-|
T Consensus 312 ~Iq~rfl~~~sf 323 (387)
T COG3064 312 AIQSRFLDADSF 323 (387)
T ss_pred HHHHHHhccccc
Confidence 444445544444
No 65
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=92.39 E-value=1.8 Score=54.74 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=6.9
Q ss_pred cHHHHHHHHHHHhCC
Q 000279 649 TWHEIFRQLALSAGF 663 (1729)
Q Consensus 649 TWpEILRq~l~a~G~ 663 (1729)
|---||=.||-++||
T Consensus 521 ~tatll~s~Lq~aG~ 535 (591)
T KOG2412|consen 521 TTATLLNSFLQTAGF 535 (591)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444444444443
No 66
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.24 E-value=0.83 Score=52.40 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=13.6
Q ss_pred HHHhhhhccccC-CCCHHHHHHHHhc
Q 000279 554 FFITFADVLGLW-PFTLDEFVQAFHD 578 (1729)
Q Consensus 554 FL~~F~~~L~Ls-pfTLddf~~AL~~ 578 (1729)
||.-|-+.+.-. -..|+||..++.-
T Consensus 201 ll~eFv~YIk~nKvV~ledLas~f~L 226 (299)
T KOG3054|consen 201 LLSEFVEYIKKNKVVPLEDLASEFGL 226 (299)
T ss_pred HHHHHHHHHHhcCeeeHHHHHHHhCc
Confidence 444444444433 3467777777664
No 67
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.95 E-value=1.2 Score=51.27 Aligned_cols=7 Identities=43% Similarity=0.767 Sum_probs=3.7
Q ss_pred chhHHHH
Q 000279 743 TVLELAD 749 (1729)
Q Consensus 743 ~v~ela~ 749 (1729)
+|.|||.
T Consensus 276 SIaelAe 282 (299)
T KOG3054|consen 276 SIAELAE 282 (299)
T ss_pred eHHHHHH
Confidence 4555554
No 68
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=91.63 E-value=17 Score=43.66 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHh
Q 000279 583 LLGEIHLALLKSIIK 597 (1729)
Q Consensus 583 LL~eiH~aLLk~ll~ 597 (1729)
+.+-|-..|-+-++.
T Consensus 305 Yag~ik~~Iq~rfl~ 319 (387)
T COG3064 305 YAGQIKSAIQSRFLD 319 (387)
T ss_pred HHHHHHHHHHHHHhc
Confidence 444444444444444
No 69
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=90.57 E-value=19 Score=43.04 Aligned_cols=9 Identities=11% Similarity=0.047 Sum_probs=3.8
Q ss_pred cCCCccccc
Q 000279 495 SKGLSSIIH 503 (1729)
Q Consensus 495 sk~l~s~~~ 503 (1729)
.+|.|....
T Consensus 235 ~kpkpvp~~ 243 (264)
T PF13904_consen 235 NKPKPVPLN 243 (264)
T ss_pred cCCCCCCcC
Confidence 344444344
No 70
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=90.51 E-value=1 Score=58.49 Aligned_cols=9 Identities=44% Similarity=0.770 Sum_probs=6.2
Q ss_pred hccccchhh
Q 000279 632 YAWGFDIRN 640 (1729)
Q Consensus 632 ~~wg~~~~~ 640 (1729)
.++||+|+.
T Consensus 839 ~afgF~is~ 847 (1102)
T KOG1924|consen 839 QAFGFNISF 847 (1102)
T ss_pred hhhccchHH
Confidence 367887765
No 71
>PRK12704 phosphodiesterase; Provisional
Probab=87.79 E-value=75 Score=41.65 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=11.3
Q ss_pred ccCCCCHHHHHHHHh
Q 000279 563 GLWPFTLDEFVQAFH 577 (1729)
Q Consensus 563 ~LspfTLddf~~AL~ 577 (1729)
.+.||..++++....
T Consensus 278 ~i~P~~iee~~~~~~ 292 (520)
T PRK12704 278 RIHPARIEEMVEKAR 292 (520)
T ss_pred CcCCCCHHHHHHHHH
Confidence 567888888877665
No 72
>PRK00106 hypothetical protein; Provisional
Probab=87.36 E-value=44 Score=43.71 Aligned_cols=9 Identities=11% Similarity=0.287 Sum_probs=3.9
Q ss_pred HHHHHHHhc
Q 000279 702 AFAWMREKG 710 (1729)
Q Consensus 702 ~~~~m~~~g 710 (1729)
...+++++|
T Consensus 401 Ga~ll~~~~ 409 (535)
T PRK00106 401 GMEFARKYK 409 (535)
T ss_pred HHHHHHHcC
Confidence 344444444
No 73
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=85.82 E-value=0.73 Score=59.37 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcccC
Q 000279 39 KTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1729)
Q Consensus 39 fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~~~ 93 (1729)
|+.. +..|...|..|.+|+..+-..+|.++||+.+.|++||++++++.....+.
T Consensus 564 ~~~p-~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv~rs 617 (1007)
T KOG3623|consen 564 FNHP-TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSVERS 617 (1007)
T ss_pred cCCc-HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhhccC
Confidence 4444 88999999999999999999999999999999999999999999885543
No 74
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=83.54 E-value=1.1e+02 Score=41.42 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=9.8
Q ss_pred CCCCCCCCcCCHHH
Q 000279 30 QQGKPKRQMKTPFQ 43 (1729)
Q Consensus 30 ~k~rr~Rt~fT~~Q 43 (1729)
.+-+-.|+.+|++-
T Consensus 139 sqdR~DR~lltPWl 152 (988)
T KOG2072|consen 139 SQDRSDRELLTPWL 152 (988)
T ss_pred cccccchHHHHHHH
Confidence 35566788888873
No 75
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=83.10 E-value=0.38 Score=43.94 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccch
Q 000279 44 LETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRR 84 (1729)
Q Consensus 44 L~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRR 84 (1729)
+..|+..|...+++.......|..+.+|+..||+.||-.|+
T Consensus 10 ~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 10 IQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp -HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 45699999999999999999999999999999999996543
No 76
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=81.79 E-value=1.6e+02 Score=37.39 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=10.5
Q ss_pred HHHHhhhcCCCcchhHHHHHH-Hhhcc
Q 000279 731 FHVLSLEGSKGLTVLELADKI-QKSGL 756 (1729)
Q Consensus 731 f~vls~~g~~gl~v~ela~~i-qk~gl 756 (1729)
|.-.-.-|+.|..-.=.|+.| ++|||
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SGl 410 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSGL 410 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcCC
Confidence 333334444444433333333 23444
No 77
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.57 E-value=66 Score=38.12 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=4.5
Q ss_pred cchhhhcccch
Q 000279 688 DIVSTIRNGSA 698 (1729)
Q Consensus 688 d~~~~~~~g~~ 698 (1729)
.-+..||.|++
T Consensus 226 ~tl~~i~~g~t 236 (246)
T PF00769_consen 226 KTLRQIRQGNT 236 (246)
T ss_dssp HHHHHHT-S-H
T ss_pred HHHHHHhcCCH
Confidence 33445556665
No 78
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=81.09 E-value=1.8 Score=50.21 Aligned_cols=9 Identities=33% Similarity=0.785 Sum_probs=3.6
Q ss_pred cCCCCCccc
Q 000279 1313 EDAHCPSCH 1321 (1729)
Q Consensus 1313 ~e~hC~~CH 1321 (1729)
++..|..|+
T Consensus 50 nRAFCYFC~ 58 (314)
T PF06524_consen 50 NRAFCYFCQ 58 (314)
T ss_pred ccceeehhh
Confidence 333444443
No 79
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=77.90 E-value=1.5 Score=54.34 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=8.7
Q ss_pred cCCCccCCCCCCCCC
Q 000279 1702 EGNIDMSEASDQNGI 1716 (1729)
Q Consensus 1702 ~~d~~~~~~~~~~~~ 1716 (1729)
++..+.++.+|||--
T Consensus 89 ~~~~~~~~~ddG~~T 103 (458)
T PF10446_consen 89 STVHDFDSDDDGNET 103 (458)
T ss_pred cccccccccccCccC
Confidence 333456667888444
No 80
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=77.84 E-value=1.6 Score=53.36 Aligned_cols=58 Identities=22% Similarity=0.337 Sum_probs=47.3
Q ss_pred CCCCCCcCCHHHHHHHHHH-Hh--hcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhh
Q 000279 32 GKPKRQMKTPFQLETLEKA-YA--SETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1729)
Q Consensus 32 ~rr~Rt~fT~~QL~~Le~~-F~--~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR 89 (1729)
..|++..+......+|+.- |. ..+||+...+..||.++||+..||..||-|.|-+..+
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~ 299 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWK 299 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCC
Confidence 4455667888888888754 22 2589999999999999999999999999999976665
No 81
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=75.91 E-value=27 Score=43.60 Aligned_cols=9 Identities=33% Similarity=0.386 Sum_probs=5.6
Q ss_pred hhhhHHHHH
Q 000279 548 LLMVWRFFI 556 (1729)
Q Consensus 548 LL~VweFL~ 556 (1729)
|-||-+|.+
T Consensus 337 L~~vr~yvr 345 (506)
T KOG2507|consen 337 LRMVRDYVR 345 (506)
T ss_pred HHHHHHHHH
Confidence 556666666
No 82
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.81 E-value=31 Score=41.02 Aligned_cols=9 Identities=33% Similarity=0.468 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 000279 466 EKATARKMA 474 (1729)
Q Consensus 466 Er~~~~~~a 474 (1729)
++.++++++
T Consensus 167 e~DKaeRka 175 (290)
T KOG2689|consen 167 ERDKAERKA 175 (290)
T ss_pred HHhHHHHHH
Confidence 333333333
No 83
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.45 E-value=2.5 Score=55.74 Aligned_cols=38 Identities=24% Similarity=0.133 Sum_probs=21.8
Q ss_pred CCCchhhHhhcccccccCCCHHHHHHHHHHHHHHHhcc
Q 000279 931 SKPGESWIQGLAEGDYSHLSVEERLNALVALIGIANEG 968 (1729)
Q Consensus 931 s~~Ge~wl~~L~e~eY~dLsveeRL~aL~aLcdl~Let 968 (1729)
.+.|-.-+.....|.|+..+++.+.-||.+|+..+---
T Consensus 656 aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~p 693 (1516)
T KOG1832|consen 656 AYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPP 693 (1516)
T ss_pred ccCceEEEeecccccccccCHHHHHHHHhhhheeecCC
Confidence 33455555555666666666666666666665555443
No 84
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=73.35 E-value=2.6e+02 Score=38.10 Aligned_cols=11 Identities=9% Similarity=0.027 Sum_probs=5.9
Q ss_pred HHHHHHhCCCc
Q 000279 63 AELSEKLGLSD 73 (1729)
Q Consensus 63 eeLA~~LgLse 73 (1729)
.--|..+|.+.
T Consensus 153 ~~~ah~igypv 163 (697)
T PF09726_consen 153 PFAAHCIGYPV 163 (697)
T ss_pred cHHHhhcCCce
Confidence 33466666543
No 85
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=73.26 E-value=2.8e+02 Score=35.73 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=21.4
Q ss_pred hhhhhhhccccchhhhhhccCCccHHHHHHHHHHHhCCCCcc
Q 000279 626 RIIEGAYAWGFDIRNWQQLLNPLTWHEIFRQLALSAGFGPKL 667 (1729)
Q Consensus 626 ~~~~~a~~wg~~~~~w~~~Ld~lTWpEILRq~l~a~G~g~~~ 667 (1729)
+|+-.+|.-||.++. .-..+|=+|.+|..+ |.||..
T Consensus 616 ~FliLfrds~cqfra---lyT~~~ETeei~kl~---gmgpk~ 651 (708)
T KOG3654|consen 616 HFLILFRDSGCQFRA---LYTYMPETEEIRKLT---GMGPKM 651 (708)
T ss_pred hhhhhhhhccceeec---ccccCccHHHHhhhh---ccCchh
Confidence 333333333665554 456778888888653 667764
No 86
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=72.33 E-value=3.4 Score=55.65 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=8.2
Q ss_pred ccccCCCcc-hHHHHH
Q 000279 1350 DIHVSDSSL-PLGIRL 1364 (1729)
Q Consensus 1350 ~~~~~~~~l-p~~l~~ 1364 (1729)
+...|++-| |..+..
T Consensus 1378 dS~~PdHdLePPkFAk 1393 (3015)
T KOG0943|consen 1378 DSDMPDHDLEPPKFAK 1393 (3015)
T ss_pred cCCCCccCCCCchHHH
Confidence 555666655 555443
No 87
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=70.93 E-value=61 Score=40.17 Aligned_cols=11 Identities=27% Similarity=0.449 Sum_probs=4.7
Q ss_pred CCHHHHHHHHh
Q 000279 567 FTLDEFVQAFH 577 (1729)
Q Consensus 567 fTLddf~~AL~ 577 (1729)
.+|++|-.-|.
T Consensus 416 ~~leefkrril 426 (442)
T PF06637_consen 416 ASLEEFKRRIL 426 (442)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 88
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=70.73 E-value=28 Score=44.87 Aligned_cols=9 Identities=22% Similarity=0.648 Sum_probs=5.2
Q ss_pred HHHHHHHHh
Q 000279 569 LDEFVQAFH 577 (1729)
Q Consensus 569 Lddf~~AL~ 577 (1729)
|+.+..||.
T Consensus 390 leqyt~a~~ 398 (492)
T PF02029_consen 390 LEQYTSAIE 398 (492)
T ss_pred HHHHHHHhh
Confidence 555555655
No 89
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=70.27 E-value=2.4e+02 Score=33.59 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=3.2
Q ss_pred HHHHhChh
Q 000279 593 KSIIKDIE 600 (1729)
Q Consensus 593 k~ll~d~e 600 (1729)
+.|-.+++
T Consensus 192 ~~L~~EL~ 199 (246)
T PF00769_consen 192 KELKSELE 199 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 90
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=69.77 E-value=1.5 Score=49.56 Aligned_cols=40 Identities=8% Similarity=0.249 Sum_probs=21.5
Q ss_pred HHHhhhhccccCC-CCHHHHHHHHhcCChhHHHHHHHHHHHHHHhC
Q 000279 554 FFITFADVLGLWP-FTLDEFVQAFHDHESRLLGEIHLALLKSIIKD 598 (1729)
Q Consensus 554 FL~~F~~~L~Lsp-fTLddf~~AL~~~ds~LL~eiH~aLLk~ll~d 598 (1729)
||..|-..+...- ..|+||...+.-..... +.-|+.|..+
T Consensus 100 lL~~Fi~yIK~~Kvv~ledla~~f~l~t~~~-----i~ri~~L~~~ 140 (188)
T PF09756_consen 100 LLQEFINYIKEHKVVNLEDLAAEFGLRTQDV-----INRIQELEAE 140 (188)
T ss_dssp HHHHHHHHHHH-SEE-HHHHHHHH-S-HHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHcceeeHHHHHHHcCCCHHHH-----HHHHHHHHHC
Confidence 5555666666654 36899888887554333 3455555553
No 91
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=68.46 E-value=2.3e+02 Score=36.21 Aligned_cols=8 Identities=50% Similarity=1.095 Sum_probs=5.4
Q ss_pred hccCCccH
Q 000279 643 QLLNPLTW 650 (1729)
Q Consensus 643 ~~Ld~lTW 650 (1729)
+.+||.+|
T Consensus 410 ~pvnP~pW 417 (420)
T COG4942 410 QPVNPQPW 417 (420)
T ss_pred CcCCchhh
Confidence 56677666
No 92
>PTZ00491 major vault protein; Provisional
Probab=67.90 E-value=1.4e+02 Score=40.86 Aligned_cols=6 Identities=50% Similarity=0.551 Sum_probs=2.2
Q ss_pred HHHhhC
Q 000279 175 VEAQLG 180 (1729)
Q Consensus 175 ve~qlg 180 (1729)
||..|.
T Consensus 421 ve~lL~ 426 (850)
T PTZ00491 421 VEELLA 426 (850)
T ss_pred HHHHHh
Confidence 333333
No 93
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=67.65 E-value=26 Score=44.27 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHH
Q 000279 582 RLLGEIHLALLKSII 596 (1729)
Q Consensus 582 ~LL~eiH~aLLk~ll 596 (1729)
.-|.++|..||-+|-
T Consensus 508 ~tl~sv~~~~lcaid 522 (708)
T KOG3654|consen 508 ETLESVHSGLLCAID 522 (708)
T ss_pred CChHhhhhhhhcccc
Confidence 356677777766553
No 94
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=65.40 E-value=2.2e+02 Score=34.28 Aligned_cols=30 Identities=33% Similarity=0.315 Sum_probs=16.2
Q ss_pred HhhCCCccCCCCcCCCCCCCCCCCCCCCCcc
Q 000279 177 AQLGEPLREDGPILGMEFDSLPPDAFGAPIA 207 (1729)
Q Consensus 177 ~qlge~~redgp~lg~efdPlpp~af~~pi~ 207 (1729)
++|+--.+...|+.++ |-++.++.+-.++.
T Consensus 16 a~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~ 45 (269)
T KOG3119|consen 16 AQLGQRARPLPPVFGP-ERELDLDAGLEALQ 45 (269)
T ss_pred ccccccccCCCCCCcc-cccccccccchhcc
Confidence 3444444555566654 55555555555554
No 95
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=65.06 E-value=27 Score=45.10 Aligned_cols=7 Identities=29% Similarity=0.748 Sum_probs=3.9
Q ss_pred chhhhhh
Q 000279 83 RRLKDKK 89 (1729)
Q Consensus 83 RRaK~KR 89 (1729)
||++..|
T Consensus 13 RRARqeR 19 (492)
T PF02029_consen 13 RRARQER 19 (492)
T ss_pred HHHHHHH
Confidence 5555555
No 96
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=64.61 E-value=2.2 Score=55.29 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=2.6
Q ss_pred ccCCCCcchH
Q 000279 1446 PILPWIPKTT 1455 (1729)
Q Consensus 1446 ~~~~~~p~T~ 1455 (1729)
..|.|++.+-
T Consensus 457 itlSWk~~~~ 466 (556)
T PF05918_consen 457 ITLSWKEAKK 466 (556)
T ss_dssp ---TTS----
T ss_pred cceeeeeccc
Confidence 5688888877
No 97
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=63.06 E-value=6.4 Score=35.62 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=35.6
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccc
Q 000279 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHR 83 (1729)
Q Consensus 33 rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNR 83 (1729)
||+|..+|-.|-..+-..+...+ ....||..+|++..+|..|..|+
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 57899999999888888888776 57889999999999999998774
No 98
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=63.05 E-value=6.6e+02 Score=36.11 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhhh
Q 000279 1404 EEVLQLLTILESGIK 1418 (1729)
Q Consensus 1404 ~el~q~l~~le~~ik 1418 (1729)
..++|+|-+++|+..
T Consensus 1176 p~~fq~l~~~~~~~~ 1190 (1317)
T KOG0612|consen 1176 PRIFQILYANEGESG 1190 (1317)
T ss_pred chhHHHHHhhccccc
Confidence 667777777777733
No 99
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=60.87 E-value=1.9e+02 Score=39.80 Aligned_cols=16 Identities=19% Similarity=-0.024 Sum_probs=8.9
Q ss_pred hhhhccccCCCCHHHH
Q 000279 557 TFADVLGLWPFTLDEF 572 (1729)
Q Consensus 557 ~F~~~L~LspfTLddf 572 (1729)
.+...|.|-.++.++-
T Consensus 691 ~~~~~ldl~G~~~~eA 706 (771)
T TIGR01069 691 EASLTLDLRGQRSEEA 706 (771)
T ss_pred CCCceEECCCCCHHHH
Confidence 4455566666666544
No 100
>PRK12705 hypothetical protein; Provisional
Probab=60.26 E-value=5.2e+02 Score=34.04 Aligned_cols=11 Identities=18% Similarity=0.021 Sum_probs=6.0
Q ss_pred HHHHHHHHHhc
Q 000279 700 ENAFAWMREKG 710 (1729)
Q Consensus 700 ~~~~~~m~~~g 710 (1729)
.....+++++|
T Consensus 372 ~iGaeLlkk~~ 382 (508)
T PRK12705 372 EIGAELARKFN 382 (508)
T ss_pred HHHHHHHHhcC
Confidence 34555566655
No 101
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=60.24 E-value=1.1e+02 Score=42.07 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=11.1
Q ss_pred hhhhccccCCCCHHHHH
Q 000279 557 TFADVLGLWPFTLDEFV 573 (1729)
Q Consensus 557 ~F~~~L~LspfTLddf~ 573 (1729)
.+...|.|-.++.++-.
T Consensus 702 ~~~~~lDL~G~~~eeA~ 718 (782)
T PRK00409 702 TVSLELDLRGMRYEEAL 718 (782)
T ss_pred CCCceEECCCCCHHHHH
Confidence 45566777777776543
No 102
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=59.84 E-value=4.7e+02 Score=35.77 Aligned_cols=13 Identities=38% Similarity=0.342 Sum_probs=6.3
Q ss_pred cHHHHHHHHHHHH
Q 000279 346 NDAEQRMEKKRKC 358 (1729)
Q Consensus 346 ~ke~~r~E~~rk~ 358 (1729)
.....|+|.+-++
T Consensus 417 ~~a~~rLE~dvkk 429 (697)
T PF09726_consen 417 PDAISRLEADVKK 429 (697)
T ss_pred hHHHHHHHHHHHH
Confidence 3444555554444
No 103
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=57.62 E-value=5.9e+02 Score=33.79 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 000279 461 RKVAIEKATARKMAKESMDLIEDEQLELMDLA 492 (1729)
Q Consensus 461 ~k~~eEr~~~~~~ake~~e~~e~E~lel~kla 492 (1729)
+.++.|++.-....++.+.-+++.+.++...+
T Consensus 427 rv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 427 RVAQKEKEQLQEEKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555555666666666666655553
No 104
>PLN03086 PRLI-interacting factor K; Provisional
Probab=57.43 E-value=46 Score=43.69 Aligned_cols=11 Identities=36% Similarity=0.598 Sum_probs=6.4
Q ss_pred cccchhhhhhh
Q 000279 1332 KFSEHSIQCEE 1342 (1729)
Q Consensus 1332 ~~~~h~~~c~~ 1342 (1729)
.+..|..+|-.
T Consensus 529 ~Lt~HE~~CG~ 539 (567)
T PLN03086 529 GMSEHESICGS 539 (567)
T ss_pred hHHHHHHhcCC
Confidence 44467776643
No 105
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=57.32 E-value=9.3 Score=52.43 Aligned_cols=7 Identities=0% Similarity=0.211 Sum_probs=2.9
Q ss_pred cccccCc
Q 000279 1598 FQGQMGH 1604 (1729)
Q Consensus 1598 ~~g~~~~ 1604 (1729)
+|-.|++
T Consensus 254 ~vrel~f 260 (840)
T PF04147_consen 254 LVRELAF 260 (840)
T ss_pred HHHHhcc
Confidence 4444443
No 106
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=57.04 E-value=2.9e+02 Score=38.18 Aligned_cols=8 Identities=50% Similarity=0.887 Sum_probs=3.9
Q ss_pred hcCCCcch
Q 000279 737 EGSKGLTV 744 (1729)
Q Consensus 737 ~g~~gl~v 744 (1729)
+|..|.||
T Consensus 771 ~GG~Gat~ 778 (782)
T PRK00409 771 EGGFGVTI 778 (782)
T ss_pred cCCCeEEE
Confidence 34555544
No 107
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=53.69 E-value=6e+02 Score=32.68 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=4.7
Q ss_pred HHhhhhccc
Q 000279 555 FITFADVLG 563 (1729)
Q Consensus 555 L~~F~~~L~ 563 (1729)
|+.||...+
T Consensus 308 l~rFG~~~~ 316 (420)
T COG4942 308 LRRFGQADG 316 (420)
T ss_pred HHHhcccCC
Confidence 455655543
No 108
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=53.66 E-value=1e+02 Score=38.88 Aligned_cols=10 Identities=20% Similarity=0.574 Sum_probs=4.5
Q ss_pred CCHHHHHHHH
Q 000279 567 FTLDEFVQAF 576 (1729)
Q Consensus 567 fTLddf~~AL 576 (1729)
||=+|+..-|
T Consensus 366 ft~eDy~Ktl 375 (506)
T KOG2507|consen 366 FTDEDYDKTL 375 (506)
T ss_pred ccchhhhhhH
Confidence 4445544333
No 109
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=53.33 E-value=8.2 Score=49.09 Aligned_cols=7 Identities=43% Similarity=1.056 Sum_probs=4.4
Q ss_pred hhccccc
Q 000279 1621 EEWGVGK 1627 (1729)
Q Consensus 1621 e~w~~~~ 1627 (1729)
-||.+.|
T Consensus 190 VDWAV~K 196 (678)
T KOG0127|consen 190 VDWAVDK 196 (678)
T ss_pred Eeeeccc
Confidence 4577665
No 110
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=52.53 E-value=3.2e+02 Score=37.77 Aligned_cols=10 Identities=20% Similarity=0.095 Sum_probs=4.8
Q ss_pred cCCccHHHHH
Q 000279 645 LNPLTWHEIF 654 (1729)
Q Consensus 645 Ld~lTWpEIL 654 (1729)
|-.+|--|-+
T Consensus 698 l~G~~~~eA~ 707 (771)
T TIGR01069 698 LRGQRSEEAL 707 (771)
T ss_pred CCCCCHHHHH
Confidence 4445555544
No 111
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=52.22 E-value=75 Score=43.24 Aligned_cols=32 Identities=22% Similarity=0.125 Sum_probs=19.2
Q ss_pred chhhHHHHHHHHHHHhhCCCccCCCCcCCCCC
Q 000279 163 QQSIMELRAIACVEAQLGEPLREDGPILGMEF 194 (1729)
Q Consensus 163 ~~~~~e~~aI~~ve~qlge~~redgp~lg~ef 194 (1729)
++=..-+.|+++++..-|.|+=..---+.+.|
T Consensus 496 i~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 496 IQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred eecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 33444467888888888877744333344444
No 112
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=50.96 E-value=5 Score=31.00 Aligned_cols=23 Identities=30% Similarity=0.875 Sum_probs=18.6
Q ss_pred CCCCccccccccCCCcccccchhhhhh
Q 000279 1315 AHCPSCHRTFGAVDKSSKFSEHSIQCE 1341 (1729)
Q Consensus 1315 ~hC~~CH~tf~~~d~e~~~~~h~~~c~ 1341 (1729)
..|++|.++|.. ..+.+|...|+
T Consensus 3 ~~C~~CgR~F~~----~~l~~H~~~C~ 25 (25)
T PF13913_consen 3 VPCPICGRKFNP----DRLEKHEKICK 25 (25)
T ss_pred CcCCCCCCEECH----HHHHHHHHhcC
Confidence 469999999975 47779988884
No 113
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=50.67 E-value=11 Score=51.55 Aligned_cols=15 Identities=27% Similarity=0.098 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHh
Q 000279 583 LLGEIHLALLKSIIK 597 (1729)
Q Consensus 583 LL~eiH~aLLk~ll~ 597 (1729)
.|.+.|..+|-.+|.
T Consensus 109 ~l~e~~~~~l~~~l~ 123 (784)
T PF04931_consen 109 WLRESCGWVLVQALK 123 (784)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 114
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.46 E-value=11 Score=46.38 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=20.5
Q ss_pred HHHHHHHHhhh-hHHHH-HHhhhccccchhhhhccccccccccc-ccc
Q 000279 1260 IEKKAALERFQ-DFQWW-MWRECFNSLSLCASKNEKTRCRQLLV-ICD 1304 (1729)
Q Consensus 1260 ~e~~~~~~r~~-~f~~w-~w~~~~~~~~l~a~k~Gkk~~~~~l~-~C~ 1304 (1729)
.|..+++.|.+ ..+.| +...-|+...-.+-+|-||-..+-++ +|+
T Consensus 6 ~e~~~a~~~~~~ete~~~~v~~dye~~~erl~~~~kkLs~~Imvpig~ 53 (514)
T KOG3130|consen 6 AECNAAKARLEVETECRKKVDNDYEALRERLSTLPKKLSYNIMVPIGP 53 (514)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHhhhhcccceeeeccc
Confidence 34444444433 23333 22333443334566788885444443 444
No 115
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=48.90 E-value=1.8e+02 Score=41.65 Aligned_cols=7 Identities=43% Similarity=0.961 Sum_probs=3.2
Q ss_pred eccccch
Q 000279 78 MWFCHRR 84 (1729)
Q Consensus 78 VWFQNRR 84 (1729)
-||+-=|
T Consensus 1739 ~wFgTvR 1745 (2220)
T KOG3598|consen 1739 KWFGTVR 1745 (2220)
T ss_pred eeeeeee
Confidence 3555433
No 116
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=47.89 E-value=1.4e+02 Score=36.71 Aligned_cols=9 Identities=0% Similarity=-0.075 Sum_probs=3.9
Q ss_pred hhhhHHHHH
Q 000279 548 LLMVWRFFI 556 (1729)
Q Consensus 548 LL~VweFL~ 556 (1729)
+-.+|.-|+
T Consensus 239 iKELhqrI~ 247 (361)
T KOG3634|consen 239 IKELHQRIC 247 (361)
T ss_pred HHHHHHHHH
Confidence 444444443
No 117
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=44.62 E-value=1.1e+03 Score=33.22 Aligned_cols=8 Identities=38% Similarity=0.243 Sum_probs=4.4
Q ss_pred HHHHHHHH
Q 000279 650 WHEIFRQL 657 (1729)
Q Consensus 650 WpEILRq~ 657 (1729)
|=|+.|.|
T Consensus 762 ~~e~~~r~ 769 (982)
T PF03154_consen 762 PLEHFRRH 769 (982)
T ss_pred cchhhhcc
Confidence 44555555
No 118
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=42.22 E-value=5.8e+02 Score=30.43 Aligned_cols=6 Identities=17% Similarity=0.357 Sum_probs=2.5
Q ss_pred CCCChh
Q 000279 538 WSDSEE 543 (1729)
Q Consensus 538 l~vp~e 543 (1729)
+++|++
T Consensus 184 ~~l~~~ 189 (250)
T PRK14474 184 FELSQD 189 (250)
T ss_pred CCCCHH
Confidence 334443
No 119
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=41.70 E-value=7.1e+02 Score=31.00 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=8.4
Q ss_pred CCcCCCCCCCCCCCC
Q 000279 187 GPILGMEFDSLPPDA 201 (1729)
Q Consensus 187 gp~lg~efdPlpp~a 201 (1729)
+-|.|.+-.|+||++
T Consensus 248 ~Q~~Gqppppmpp~P 262 (498)
T KOG4849|consen 248 LQINGQPPPPMPPAP 262 (498)
T ss_pred cCcCCCCCCCCCCCC
Confidence 345566666666643
No 120
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=41.42 E-value=1.2e+03 Score=32.67 Aligned_cols=6 Identities=17% Similarity=0.794 Sum_probs=2.1
Q ss_pred HhhcCC
Q 000279 51 YASETY 56 (1729)
Q Consensus 51 F~~~~y 56 (1729)
|...+|
T Consensus 398 FkTSpy 403 (1189)
T KOG1265|consen 398 FKTSPY 403 (1189)
T ss_pred ccCCCC
Confidence 333333
No 121
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=40.99 E-value=1e+03 Score=31.65 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=10.0
Q ss_pred cCccchhHHHHHHHhhhc
Q 000279 721 LTPGTVKFAAFHVLSLEG 738 (1729)
Q Consensus 721 l~pgTvk~a~f~vls~~g 738 (1729)
|.-|=+..|+=.|-.+.|
T Consensus 534 l~~gdL~~A~~~~~~L~g 551 (582)
T PF09731_consen 534 LERGDLDKAARELNQLKG 551 (582)
T ss_pred HHCCCHHHHHHHHHhCch
Confidence 444556666655555555
No 122
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.96 E-value=1.4e+03 Score=33.17 Aligned_cols=15 Identities=7% Similarity=0.313 Sum_probs=11.9
Q ss_pred cchhHHHHHHHHHhc
Q 000279 696 GSAAENAFAWMREKG 710 (1729)
Q Consensus 696 g~~~~~~~~~m~~~g 710 (1729)
-..|-+.++-+++++
T Consensus 651 ~e~aq~cI~fl~~~n 665 (1293)
T KOG0996|consen 651 IETAQECINFLKKNN 665 (1293)
T ss_pred HHHHHHHHHHHHHcC
Confidence 455677889999988
No 123
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=40.48 E-value=3.2e+02 Score=35.32 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=9.9
Q ss_pred CCCCCCccccCCCCCCCC
Q 000279 519 LSVFPPKTVRLKRPFSVQ 536 (1729)
Q Consensus 519 LppfPP~~v~lkrP~ps~ 536 (1729)
+..+|+.......|.+..
T Consensus 154 l~~~~~~~~~~~~~~~~~ 171 (445)
T PRK13428 154 LDAMAPSTADVDYPLLAK 171 (445)
T ss_pred hhccCCCchhhcCchhhh
Confidence 344555555566666544
No 124
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=40.31 E-value=25 Score=46.69 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=14.3
Q ss_pred CCCCCCCCC--ChhhhhhhhhhHHHHHhhh
Q 000279 532 PFSVQPWSD--SEENVGNLLMVWRFFITFA 559 (1729)
Q Consensus 532 P~ps~Pl~v--p~e~vg~LL~VweFL~~F~ 559 (1729)
++.-+|+.. ....--.+|++|-|=+...
T Consensus 270 ~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK 299 (988)
T KOG2038|consen 270 YFSQRPLLELTNKRLRDKILLMWYFEHELK 299 (988)
T ss_pred HHhhChhhhccccccccceehHHHHHHHHH
Confidence 334444442 3333345888887755433
No 125
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.27 E-value=9.2e+02 Score=30.99 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=23.7
Q ss_pred hhhhHHHHHhhhhcc--ccCCCCHHHHHHHHhcCC
Q 000279 548 LLMVWRFFITFADVL--GLWPFTLDEFVQAFHDHE 580 (1729)
Q Consensus 548 LL~VweFL~~F~~~L--~LspfTLddf~~AL~~~d 580 (1729)
+|.-|.|+.+|..-| .++.++-++|.+||....
T Consensus 440 ~lkn~ha~~~~~~Slaaeid~~sqdeLmqafqeqe 474 (502)
T KOG0982|consen 440 FLKNWHATFSLFFSLAAEIDEMSQDELMQAFQEQE 474 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566677777766655 345678899999999633
No 126
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=40.11 E-value=18 Score=44.95 Aligned_cols=45 Identities=22% Similarity=0.606 Sum_probs=33.7
Q ss_pred HHHHHhhhccccchhhhhccccccccccccccccccccCc-cCCCCCcccccc
Q 000279 1273 QWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSYLC-EDAHCPSCHRTF 1324 (1729)
Q Consensus 1273 ~~w~w~~~~~~~~l~a~k~Gkk~~~~~l~~C~~C~~~y~~-~e~hC~~CH~tf 1324 (1729)
..|+|..++- ..+.-...+.+..|..||...-. ++-+|+.||..-
T Consensus 200 ~~~lwe~~~p-------q~~~~~~~~~~~~C~~C~~~~~~~~~~~CpRC~~~L 245 (418)
T COG2995 200 RRWLWERFYP-------QTLATGAREGLRSCLCCHYILPHDAEPRCPRCGSKL 245 (418)
T ss_pred HHHHHHhhcc-------ccCCCCCcccceecccccccCCHhhCCCCCCCCChh
Confidence 3689997774 11224566778889999996666 899999999876
No 127
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=39.17 E-value=6.5e+02 Score=33.85 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=19.2
Q ss_pred hhHhhcccccccCCCHHHHHHHHHHHHHHHhcchhHHHHH
Q 000279 936 SWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVL 975 (1729)
Q Consensus 936 ~wl~~L~e~eY~dLsveeRL~aL~aLcdl~Let~sIR~~L 975 (1729)
+||...-. +| |.+++. -+.-|+|+.+.-..+--..|
T Consensus 599 pwV~KKIi-Ef--lGeeE~-tLVdFI~s~i~~h~~~q~iL 634 (668)
T KOG2253|consen 599 PWVNKKII-EF--LGEEED-TLVDFICSNIRQHSSPQQIL 634 (668)
T ss_pred HHHHHHHH-HH--hCCcch-hHHHHHHHHHHhcCCHHHHH
Confidence 67665543 22 344443 24567788777666543333
No 128
>smart00017 OSTEO Osteopontin. Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite [1,2,3]. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone
Probab=38.68 E-value=29 Score=40.33 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=18.3
Q ss_pred ccccccccCCcccccccCCccccCCCCCCCCCCCCcccCCC
Q 000279 1641 SAEAVDSDDNVQAVEYEQGNWEVGFNGATNGWNRDVMEVSD 1681 (1729)
Q Consensus 1641 ~~e~~~~d~n~q~~~yd~~~~~~~~ng~~~~~~~~~~~~~d 1681 (1729)
+.-+|+-||+-|++ |-+++|- |-+-|++-|
T Consensus 44 ~vSSEEtdD~kQet----------lPsksne-Shd~~DD~d 73 (287)
T smart00017 44 AVSSEETDDFKQET----------LPSKSNE-SHEHTDDLD 73 (287)
T ss_pred cccccccccccccc----------CCCCCcc-Chhhccccc
Confidence 34445666778888 7777666 445454433
No 129
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=34.73 E-value=18 Score=41.55 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=27.0
Q ss_pred ccccccccccccccccCccCCCCCccccccc
Q 000279 1295 RCRQLLVICDVCLDSYLCEDAHCPSCHRTFG 1325 (1729)
Q Consensus 1295 ~~~~~l~~C~~C~~~y~~~e~hC~~CH~tf~ 1325 (1729)
+-+..--+|..|+-.+-+-..||+.||.-|.
T Consensus 255 rvv~~GfvCsVCLsvfc~p~~~C~~C~skF~ 285 (296)
T COG5242 255 RVVLLGFVCSVCLSVFCRPVPVCKKCKSKFS 285 (296)
T ss_pred cEEEEeeehhhhheeecCCcCcCcccccccc
Confidence 4455667899999999999999999999995
No 130
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=34.44 E-value=32 Score=45.68 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=21.2
Q ss_pred hhhhhccccccccccccccccccccCccCCCCCccccccccCCCcccccch
Q 000279 1286 LCASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSCHRTFGAVDKSSKFSEH 1336 (1729)
Q Consensus 1286 l~a~k~Gkk~~~~~l~~C~~C~~~y~~~e~hC~~CH~tf~~~d~e~~~~~h 1336 (1729)
|-|..+|++-.. .| +.-.++.+.+-+ |.-|-+-+.|-+...|
T Consensus 626 lEaH~NGfRy~s---~R-~~~vdiLfsNIK-----hafFqpc~~Emi~llH 667 (960)
T KOG1189|consen 626 LEAHENGFRYQS---LR-DERVDILFSNIK-----HAFFQPCEGEMIILLH 667 (960)
T ss_pred eeeecCceeeee---cc-ccchhhhhhhhh-----hhhcCccccceeeEee
Confidence 456666665321 22 334455555544 5566555555555444
No 131
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.19 E-value=7.6e+02 Score=28.50 Aligned_cols=26 Identities=27% Similarity=0.171 Sum_probs=17.5
Q ss_pred HHHhcchhhHHHHHHHHHHHhcCCCc
Q 000279 474 AKESMDLIEDEQLELMDLAAASKGLS 499 (1729)
Q Consensus 474 ake~~e~~e~E~lel~klaa~sk~l~ 499 (1729)
..+..+.+.++.++.+-+.+..++..
T Consensus 168 iersknfITReNLea~Ie~AL~~p~~ 193 (227)
T KOG4691|consen 168 IERSKNFITRENLEARIEAALDSPKN 193 (227)
T ss_pred HHHHhhhhhHHhHHHHHHHHHcCccc
Confidence 34456678888888777777666443
No 132
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=33.99 E-value=13 Score=31.04 Aligned_cols=26 Identities=27% Similarity=0.467 Sum_probs=17.1
Q ss_pred ccccccccccccccCccCCCCCcccc
Q 000279 1297 RQLLVICDVCLDSYLCEDAHCPSCHR 1322 (1729)
Q Consensus 1297 ~~~l~~C~~C~~~y~~~e~hC~~CH~ 1322 (1729)
.=.+.+|..|-..+|+-...|+.||.
T Consensus 8 ~l~~~rC~~Cg~~~~pPr~~Cp~C~s 33 (37)
T PF12172_consen 8 RLLGQRCRDCGRVQFPPRPVCPHCGS 33 (37)
T ss_dssp -EEEEE-TTT--EEES--SEETTTT-
T ss_pred EEEEEEcCCCCCEecCCCcCCCCcCc
Confidence 34578999999999999999999984
No 133
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=33.70 E-value=31 Score=47.35 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=4.9
Q ss_pred chhHHHHHH
Q 000279 968 GNSIRAVLE 976 (1729)
Q Consensus 968 t~sIR~~LE 976 (1729)
...+|++|+
T Consensus 938 ad~~~QfLd 946 (3015)
T KOG0943|consen 938 ADACRQFLD 946 (3015)
T ss_pred HHHHHHHHH
Confidence 445566654
No 134
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=33.47 E-value=7.3e+02 Score=32.12 Aligned_cols=9 Identities=22% Similarity=0.265 Sum_probs=3.8
Q ss_pred hhhhHHHHH
Q 000279 548 LLMVWRFFI 556 (1729)
Q Consensus 548 LL~VweFL~ 556 (1729)
|+.|.+.|.
T Consensus 206 l~~v~~~l~ 214 (445)
T PRK13428 206 LVSVAKLLD 214 (445)
T ss_pred HHHHHHHHc
Confidence 444444443
No 135
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.43 E-value=1.5e+02 Score=37.48 Aligned_cols=7 Identities=43% Similarity=0.624 Sum_probs=3.8
Q ss_pred ccccccc
Q 000279 223 KIYDRYD 229 (1729)
Q Consensus 223 k~y~~~~ 229 (1729)
+++.|+|
T Consensus 190 ~l~~RqD 196 (440)
T KOG2357|consen 190 KLVKRQD 196 (440)
T ss_pred hhhhhcc
Confidence 5555555
No 136
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.11 E-value=1.4e+03 Score=30.97 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000279 971 IRAVLEDRLEAANALKKQMWAEAQL 995 (1729)
Q Consensus 971 IR~~LEerlE~a~aLkKq~r~ea~e 995 (1729)
++..|+.-+|..+++....|..+.+
T Consensus 826 l~~ql~qEle~l~ayq~k~k~~~e~ 850 (948)
T KOG0577|consen 826 LREQLEQELELLNAYQSKIKMQAEE 850 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666665555554333
No 137
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.77 E-value=1.4e+03 Score=31.02 Aligned_cols=9 Identities=44% Similarity=0.848 Sum_probs=7.1
Q ss_pred HHHHHHhhc
Q 000279 808 ARKKIRIFE 816 (1729)
Q Consensus 808 ~~~~~~~~~ 816 (1729)
-|+||+-|-
T Consensus 1066 ~rekIkqF~ 1074 (1187)
T KOG0579|consen 1066 MREKIKQFD 1074 (1187)
T ss_pred HHHHHHHHH
Confidence 588888775
No 138
>PF05071 NDUFA12: NADH ubiquinone oxidoreductase subunit NDUFA12; InterPro: IPR007763 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents the 17.2kDa subunit from NADH:ubiquinone oxidoreductase and its homologues []. This subunit is believed to be one of the 36 structural complex I proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0009055 electron carrier activity, 0016020 membrane
Probab=32.18 E-value=36 Score=35.20 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=23.7
Q ss_pred ccCCccCCCCceeecccCCCCCCCCCCceEEEccC
Q 000279 1119 LPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHD 1153 (1729)
Q Consensus 1119 ~pLGkDR~~NRYW~F~~s~s~~dp~~grIfVE~~D 1153 (1729)
.+.|.|-++|+||-+. .++.+..+-||+..+
T Consensus 2 ~lVG~D~~GN~YyE~~----~~~~~~~rRwV~y~~ 32 (105)
T PF05071_consen 2 TLVGTDEFGNKYYENP----RDEQGRRRRWVEYAG 32 (105)
T ss_pred CEeeEeCCCCEEEeec----CCCcCCCcEEEEcCC
Confidence 4689999999999997 234456678888643
No 139
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=31.77 E-value=2.3e+03 Score=33.04 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=14.0
Q ss_pred chHHHHHHHHhhccceeeccCCCCc
Q 000279 1453 KTTAAVALRLLELDASIMYVKPEKP 1477 (1729)
Q Consensus 1453 ~T~savaLrl~~LDa~I~y~~~~~~ 1477 (1729)
.++++|==||-.|-+.+.=....+.
T Consensus 1801 ~~i~~Learir~LE~~l~~E~~~~~ 1825 (1930)
T KOG0161|consen 1801 KQIAKLEARIRELESELEGEQRRKA 1825 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhH
Confidence 4556666666666666554444333
No 140
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=30.42 E-value=3.4e+02 Score=33.03 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhcchhHH
Q 000279 952 EERLNALVALIGIANEGNSIR 972 (1729)
Q Consensus 952 eeRL~aL~aLcdl~Let~sIR 972 (1729)
+.-+++++-|-+....+.+|+
T Consensus 340 e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 340 ESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHHHHHhcCCceecceeee
Confidence 333333333333333333333
No 141
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=30.12 E-value=1.7e+02 Score=41.73 Aligned_cols=58 Identities=14% Similarity=0.012 Sum_probs=53.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhh
Q 000279 32 GKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1729)
Q Consensus 32 ~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR 89 (1729)
.+-.|+.++..|+.+|...|....||.-.+...++.-|++..+.+-.||++++.++..
T Consensus 444 ~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq 501 (1406)
T KOG1146|consen 444 PLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQ 501 (1406)
T ss_pred hhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhcc
Confidence 4456888999999999999999999999999999999999999999999998888887
No 142
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=29.71 E-value=5.4e+02 Score=33.99 Aligned_cols=9 Identities=22% Similarity=0.128 Sum_probs=5.3
Q ss_pred CccHHHHHH
Q 000279 647 PLTWHEIFR 655 (1729)
Q Consensus 647 ~lTWpEILR 655 (1729)
-+-.||||-
T Consensus 519 riRvPEIiF 527 (645)
T KOG0681|consen 519 RIRVPEIIF 527 (645)
T ss_pred eeccceeee
Confidence 456666663
No 143
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=29.36 E-value=31 Score=45.99 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=9.9
Q ss_pred cCCCCCCCCCCCCCCCCc
Q 000279 189 ILGMEFDSLPPDAFGAPI 206 (1729)
Q Consensus 189 ~lg~efdPlpp~af~~pi 206 (1729)
.+|-.-+-||......|+
T Consensus 105 l~~Q~~~~l~s~~ls~~q 122 (1194)
T KOG4246|consen 105 LYGQKTDDLYSDKLSGYQ 122 (1194)
T ss_pred ccCCcccccccccccCCC
Confidence 344455666665555555
No 144
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=29.30 E-value=1.2e+03 Score=29.03 Aligned_cols=34 Identities=38% Similarity=0.393 Sum_probs=19.3
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHhcchhHHHHHH
Q 000279 941 LAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLE 976 (1729)
Q Consensus 941 L~e~eY~dLsveeRL~aL~aLcdl~Let~sIR~~LE 976 (1729)
|.+.-.-+||+. |.-|.+-+.++.++.++-..++
T Consensus 487 l~sp~s~dLSP~--L~d~~AA~Qla~~gps~~q~l~ 520 (561)
T KOG1103|consen 487 LNSPASMDLSPD--LEDLEAAIQLANAGPSSNQALE 520 (561)
T ss_pred cCCCccCCCCcc--HHHHHHHHHHHhcCCchhHHHH
Confidence 444445556664 3345555666667666665554
No 145
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=28.80 E-value=2.1e+03 Score=32.24 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=24.8
Q ss_pred hhhhhhhccccchhhhhhccCCccHHHHHHHHHHHh
Q 000279 626 RIIEGAYAWGFDIRNWQQLLNPLTWHEIFRQLALSA 661 (1729)
Q Consensus 626 ~~~~~a~~wg~~~~~w~~~Ld~lTWpEILRq~l~a~ 661 (1729)
.....+|.| -..|..+++.++|..|++....-.
T Consensus 487 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 519 (1353)
T TIGR02680 487 HREGARLAW---VDAWQAQLRELTILAVDDQPGALA 519 (1353)
T ss_pred HHHHHHHHH---hhhHHhhhccchhhhhcchhhhhh
Confidence 345556677 577888999999999988776644
No 146
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=28.71 E-value=1.3e+03 Score=29.36 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=7.8
Q ss_pred HHHHHHHHhCCCc
Q 000279 61 TRAELSEKLGLSD 73 (1729)
Q Consensus 61 ~ReeLA~~LgLse 73 (1729)
.+..|...|+++-
T Consensus 80 ~~~NLtkeLN~t~ 92 (442)
T PF06637_consen 80 SQANLTKELNLTT 92 (442)
T ss_pred HhhHHHHHhchhH
Confidence 3456677777653
No 147
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=28.28 E-value=41 Score=48.11 Aligned_cols=15 Identities=53% Similarity=0.722 Sum_probs=6.9
Q ss_pred cccCCCccccCCCCC
Q 000279 1676 VMEVSDEDEDAFGDD 1690 (1729)
Q Consensus 1676 ~~~~~d~d~~~~~~~ 1690 (1729)
+|++.|||+|.++||
T Consensus 152 ~~d~~~~~~~~~~~~ 166 (2849)
T PTZ00415 152 VIDDDDEDEDEDDDD 166 (2849)
T ss_pred ccCCccccccccccc
Confidence 555555444443333
No 148
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=28.00 E-value=1e+03 Score=32.13 Aligned_cols=24 Identities=8% Similarity=-0.024 Sum_probs=10.9
Q ss_pred CCCcCCchhhHHHHHHHHHHHhhC
Q 000279 157 RRSYESQQSIMELRAIACVEAQLG 180 (1729)
Q Consensus 157 ~ryy~p~~~~~e~~aI~~ve~qlg 180 (1729)
.-||.+....-....+..|.+.-|
T Consensus 42 ~vfv~~~~~~~s~~~~~~il~~~g 65 (668)
T KOG2253|consen 42 TVFVGNISYLVSQEFWKSILAKSG 65 (668)
T ss_pred eeEecchhhhhhHHHHHHHHhhCC
Confidence 334555433334444555554444
No 149
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=27.96 E-value=44 Score=42.57 Aligned_cols=30 Identities=30% Similarity=0.545 Sum_probs=24.8
Q ss_pred cccccccccccccccCccCCCCCccccccc
Q 000279 1296 CRQLLVICDVCLDSYLCEDAHCPSCHRTFG 1325 (1729)
Q Consensus 1296 ~~~~l~~C~~C~~~y~~~e~hC~~CH~tf~ 1325 (1729)
-.+-+..|..|.-++-.+..||+.||.+-.
T Consensus 217 ~~~~l~~C~~Cd~l~~~~~a~CpRC~~~L~ 246 (419)
T PRK15103 217 LRQGLRSCSCCTAILPADQPVCPRCHTKGY 246 (419)
T ss_pred cccCCCcCCCCCCCCCCCCCCCCCCCCcCc
Confidence 345677899999998777889999999873
No 150
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=27.44 E-value=1.3e+03 Score=28.97 Aligned_cols=112 Identities=17% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000279 348 AEQRMEKKRKCDEARIAREVEANEIRIQKELERQDNLRRKNEERMRKEME---KHERERRKEEERLMRERQREEERSLRE 424 (1729)
Q Consensus 348 e~~r~E~~rk~eeer~~ke~e~eeer~~kE~Er~e~errkeEer~rkE~E---r~ere~kkeeEr~erer~~EeEr~~rE 424 (1729)
....+..-..+-..-.-++.-.+++-.-++-||..+-.-++.|-.|+++| ...+..+-+.+++.+-.+.+.++.-.+
T Consensus 229 ~~~aEA~lAyelqaak~kq~i~~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~paeAe~~r~~klaEAnk~~~~~q 308 (428)
T KOG2668|consen 229 TNKAEADLAYELQAAKTKQAIREEEIQVAVVERTKQVAVREQEIQRRVEELNATVRTPAEAEVERETKLAEANKELYNKQ 308 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000279 425 QKREMERREKFLQKEYLRAEKRRLKEELRMEKQAA 459 (1729)
Q Consensus 425 ~~reeer~eke~ekE~~r~Ek~r~kEe~r~ekE~~ 459 (1729)
.+-|.+..++.-+.|.-..+.....+.++...+.+
T Consensus 309 aqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~ 343 (428)
T KOG2668|consen 309 AQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAE 343 (428)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHH
No 151
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=27.41 E-value=31 Score=40.50 Aligned_cols=10 Identities=10% Similarity=0.255 Sum_probs=6.4
Q ss_pred CCCcchhhcc
Q 000279 1615 HRNLDEEEWG 1624 (1729)
Q Consensus 1615 ~r~~~~e~w~ 1624 (1729)
+=|...+-|+
T Consensus 178 ~yn~~~~~fn 187 (303)
T KOG3064|consen 178 IYNFRQHAFN 187 (303)
T ss_pred cccchHHHHH
Confidence 4466667775
No 152
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=27.35 E-value=1.4e+02 Score=39.90 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=47.6
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhcc
Q 000279 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEK 91 (1729)
Q Consensus 31 k~rr~Rt~fT~~QL~~Le~~F~~~~yPs~~~ReeLA~~LgLserqVqVWFQNRRaK~KR~~ 91 (1729)
.+-+.|+.+...+-..|..++..+--++-..-..++..|...+.+|+|||++|+..-+...
T Consensus 625 ~p~kv~sp~k~~dq~ql~~a~elq~s~~n~~~pl~~t~~~n~~pv~ev~dhsrsstpsp~p 685 (1007)
T KOG3623|consen 625 RPVKVRSPIKEEDQQQLKQAYELQASPSNDEFPLIATRLQNDPPVVEVWDHSRSSTPSPMP 685 (1007)
T ss_pred CCccccCCCCccchhhhHhhhhcccCccCcccchhhhhccCCCcchhhcccCCCCCCCCCc
Confidence 4455667777777788888888877777666666677788889999999999998877743
No 153
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.15 E-value=1.6e+03 Score=31.44 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=25.7
Q ss_pred cchHHHHHHHHHHHHHHhcCChhHHhhhhchhHHHHHHhhhccCCCHHHH
Q 000279 1357 SLPLGIRLLKPLSAVIEAYIPPEALEASWTDERRKTWGMKLNMSSSAEEV 1406 (1729)
Q Consensus 1357 ~lp~~l~~LK~~l~~iEa~lp~eAl~~~W~~~~rk~W~~~l~~ass~~el 1406 (1729)
.||--|.+|=+-+++|.= .++|++.=+...-|+|...+-++=+++++
T Consensus 807 ILPeslKLlPly~la~lK---s~~l~~~~~~~DdRi~~~~~v~sl~v~~~ 853 (1007)
T KOG1984|consen 807 ILPESLKLLPLYMLALLK---SSALRPQEIRTDDRIYQLQLVTSLSVEQL 853 (1007)
T ss_pred echhhhHHHHHHHHHHHH---hhcccccccccchhHHHHHHhhcccHHhh
Confidence 567777777777777654 35666422223334444444444445544
No 154
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=27.12 E-value=6.7e+02 Score=31.79 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=4.2
Q ss_pred ccCCCCCCCC
Q 000279 297 HIFSSPNGGE 306 (1729)
Q Consensus 297 ~~~psp~~~~ 306 (1729)
+++-+|++.+
T Consensus 224 PVmHsp~rk~ 233 (506)
T KOG2441|consen 224 PVMHSPSRKM 233 (506)
T ss_pred CcccCCCccc
Confidence 3344444443
No 155
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=26.01 E-value=1.5e+03 Score=29.14 Aligned_cols=219 Identities=14% Similarity=-0.003 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-cccCCCCCCCCCCCCCCCCCCcCCchhhHHHHHHHHHHHhhCCC
Q 000279 104 VVMPESPIDELRAGAEPGSDYGSGSGSGSSPYLME-LRNAVGSSRGLMDDMPIVRRSYESQQSIMELRAIACVEAQLGEP 182 (1729)
Q Consensus 104 ~~~~~p~~~~p~~~~~~~s~~gsgs~sgssP~~~~-~rr~~~~s~~~P~~~~~~~ryy~p~~~~~e~~aI~~ve~qlge~ 182 (1729)
.+........++....++-.++..++.-.++-++. ..|-..++++.|.....+..-..+..... +
T Consensus 263 ~p~~~~~~~pp~~~~~~~~~~~q~g~g~a~~r~~~n~~rPt~pPP~ppl~~~~g~~p~as~~s~p--------------~ 328 (518)
T KOG1830|consen 263 APSGMTMHHPPQPPVMPHASQGQRGGGLASARPSSNVVRPTQPPPPPPLDSPPGPDPTASIPSTP--------------P 328 (518)
T ss_pred CCcCCCCCCCCCCCccccccccccCCcccCcCCCcCCCCCCCCCCCCCCCCCCCCCCcCCCCCCC--------------C
Q ss_pred ccCCCCcCCCCCCCCCCCCCCCCccCchhhhccCCCCccccccccccCCCCccccCcCCCCCCCCCCCCCCCCCCCCCcc
Q 000279 183 LREDGPILGMEFDSLPPDAFGAPIAGSSEQQKRSGHPYESKIYDRYDTKSNKVIPRAHHEYQSLSDQPYFHGSPIDGSRA 262 (1729)
Q Consensus 183 ~redgp~lg~efdPlpp~af~~pi~~~~~q~k~P~~~~~~k~y~~~~~~~~k~~~r~~~~~q~~P~~~~~~~~p~~~~~~ 262 (1729)
---|+++. |.||-.|++|| -+..|..+... .+.++-+-|.....-. ..+.+..
T Consensus 329 ~~~d~lpp-----Ppp~~~~~sp~-----~pppp~pp~~~----------------p~~~~~a~pp~~~pl~-~~~p~~a 381 (518)
T KOG1830|consen 329 DPRDDLPP-----PPPPLLMNSPI-----VPPPPSPPSTI----------------PFVEPAAPPPTNPPLC-NPFPSIA 381 (518)
T ss_pred CCccCCCC-----CCCcccccCCC-----CCCCCCCCCCC----------------CCcccCCCCCCCCCCC-CCCcccc
Q ss_pred ccccCCCCCCCCCCccccCCCCcccccccCCC--CCccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000279 263 RTSFLHANEPSSRVHGVQGHVARVRVLSQQDK--PAHIFSSPNGGEDSLLQRESTSNNRKNAQSTSHPIFGTEDPYLLSD 340 (1729)
Q Consensus 263 r~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~--p~~~~psp~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 340 (1729)
+++|+-.-.+++-|+.+-+..+..--.+..+. +++.+=+++......+...+ ......+-...+......++..-.-
T Consensus 382 ~~~~~~pphp~p~~~~~~sppPppppppppg~~~~p~~i~p~~S~a~g~p~~~P-~~p~~~~~~~~~~lP~~sDaRsdLL 460 (518)
T KOG1830|consen 382 MTSFLCPPHPLPQGAFFGSPPPPPPPPPPPGPKLPPSVICPSGSLAKGAPMLPP-SAPVSEAKRPKPVLPPISDARSDLL 460 (518)
T ss_pred ccccCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccCCCccCCCCCCcCCC-CCCchhccCCCCCCCCCCchHHHHH
Q ss_pred ccccCcHHHHHHHHHHHHHHHHHH
Q 000279 341 GQTFNNDAEQRMEKKRKCDEARIA 364 (1729)
Q Consensus 341 ~~~~~~ke~~r~E~~rk~eeer~~ 364 (1729)
..+..-=..+|.|+++++|.++++
T Consensus 461 ~aIr~GiqLrKVeeqreqeakr~~ 484 (518)
T KOG1830|consen 461 AAIRSGIQLRKVEEQREQEAKREA 484 (518)
T ss_pred HHHHhcchhHHHHHHHHHHHhhcc
No 156
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=26.00 E-value=48 Score=46.28 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=12.4
Q ss_pred HHHHHhhhhHHHH----HHhhh
Q 000279 1263 KAALERFQDFQWW----MWREC 1280 (1729)
Q Consensus 1263 ~~~~~r~~~f~~w----~w~~~ 1280 (1729)
+.+++++++--|| ||.+.
T Consensus 1064 ~~a~~~~k~i~kw~kk~~w~~~ 1085 (1640)
T KOG0262|consen 1064 KKASKYIKKILKWKKKHMWFEL 1085 (1640)
T ss_pred HHHHHHHHHHHHHHhhhccchh
Confidence 3566777888888 77743
No 157
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.60 E-value=1.2e+03 Score=31.48 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhCCCccCCCCcCCCCCCCC
Q 000279 168 ELRAIACVEAQLGEPLREDGPILGMEFDSL 197 (1729)
Q Consensus 168 e~~aI~~ve~qlge~~redgp~lg~efdPl 197 (1729)
-|.||-.+-+.+-+-|. --|++||--
T Consensus 162 vh~av~~~~reIee~L~----~agldyDl~ 187 (652)
T COG2433 162 VHGAVKRVVREIEEKLD----EAGLDYDLE 187 (652)
T ss_pred HHHHHHHHHHHHHHHHH----hcCCCceeE
Confidence 35566555544444443 235566543
No 158
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=24.64 E-value=47 Score=47.62 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=11.7
Q ss_pred CCCCCCcchhhcccccccccccccccccCccc
Q 000279 1612 SGLHRNLDEEEWGVGKERMINMEDAENSNSAE 1643 (1729)
Q Consensus 1612 ~~s~r~~~~e~w~~~~~~~~~~~~~~n~~~~e 1643 (1729)
+.-.|+|++|+ |---||-+..+
T Consensus 134 ~~~~r~l~eed----------~~~~~~~~~d~ 155 (2849)
T PTZ00415 134 RRRARHLAEED----------MSPRDNFVIDD 155 (2849)
T ss_pred hHHhhccchhh----------cCcccccccCC
Confidence 34456776443 44556655533
No 159
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=24.49 E-value=22 Score=29.66 Aligned_cols=25 Identities=24% Similarity=0.642 Sum_probs=17.9
Q ss_pred ccccccccccCccC---------CCCCccccccc
Q 000279 1301 VICDVCLDSYLCED---------AHCPSCHRTFG 1325 (1729)
Q Consensus 1301 ~~C~~C~~~y~~~e---------~hC~~CH~tf~ 1325 (1729)
..|+.|...|.-.+ -.|+.||.+|.
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWY 36 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEE
Confidence 56888888665542 47999988874
No 160
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=24.37 E-value=3.7e+02 Score=38.95 Aligned_cols=7 Identities=14% Similarity=0.197 Sum_probs=2.9
Q ss_pred hhccCCC
Q 000279 212 QQKRSGH 218 (1729)
Q Consensus 212 q~k~P~~ 218 (1729)
||..|..
T Consensus 1965 hq~~p~~ 1971 (2220)
T KOG3598|consen 1965 HQRNPLN 1971 (2220)
T ss_pred eecCcch
Confidence 3444433
No 161
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=22.19 E-value=91 Score=33.63 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=49.9
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHhhccccCCCCCCchhhHHHhhcccccchhccCCCcccccCCccCChhhHHHHHHHH
Q 000279 729 AAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRPAFRKDPADAEAILAAA 808 (1729)
Q Consensus 729 a~f~vls~~g~~gl~v~ela~~iqk~glrd~~ts~t~ea~i~~alsrd~~Lfer~apsty~~r~~~r~~p~~~~~~~~~~ 808 (1729)
.|+.+|... .+-++..+|...||+...-.-..-...-+-++.-|.=|. -|-.+-=++|.||.||-.+--+ |.|....
T Consensus 8 vAy~iL~~~-~~~m~f~dL~~ev~~~~~~s~e~~~~~iaq~YtdLn~DG-RFi~lG~n~WgLr~w~p~d~i~-e~~~~~~ 84 (129)
T PRK02363 8 VAYEILKEK-KEPMSFYDLVNEIQKYLGKSDEEIRERIAQFYTDLNLDG-RFISLGDNKWGLRSWYPVDEID-EEIIPLE 84 (129)
T ss_pred HHHHHHHHc-CCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhccC-CeeEcCCCceecccccChhhhh-hhhhcch
Confidence 356666655 567888888888886644211111122234455666677 7999999999999999887744 4555444
No 162
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=21.95 E-value=1.8e+03 Score=28.66 Aligned_cols=153 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCccccCCCCcccccccCCCCCccCCCCCCCCCCcccccCCCCCCCCCCC----CCCCCCCCCCCCCCCcccccCcHHHH
Q 000279 275 RVHGVQGHVARVRVLSQQDKPAHIFSSPNGGEDSLLQRESTSNNRKNAQS----TSHPIFGTEDPYLLSDGQTFNNDAEQ 350 (1729)
Q Consensus 275 ~~~~~~~~~~~~~~~s~~~~p~~~~psp~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~ke~~ 350 (1729)
+|..+.+|-+....+|.--+|-|.-. .+..|-..+...++...-. +.....|+..|++..+.-..-+-...
T Consensus 432 pgsh~sSH~sssVssSp~~~phh~~~-----~~~~p~~~~~a~~p~d~l~~~n~~~al~gG~~gp~i~ada~SS~eTll~ 506 (641)
T KOG3915|consen 432 PGSHASSHHSSSVSSSPVVPPHHRGS-----VDETPLSTPTARDPLDKLSLTNHGQALPGGFPGPFIFADALSSIETLLT 506 (641)
T ss_pred cccccccccccccccCCccCchhccc-----ccCCCCCCccccChhhhhccCCCCCcCCCCCCCcccccccchhHHHHHH
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000279 351 RMEKKRKC---DEARIAREVEANEIRIQKELERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKR 427 (1729)
Q Consensus 351 r~E~~rk~---eeer~~ke~e~eeer~~kE~Er~e~errkeEer~rkE~Er~ere~kkeeEr~erer~~EeEr~~rE~~r 427 (1729)
.++---|. -....+++.+-+.+.++++.-| ||+-|+--++.-..+|.-+.--+++.+.++|
T Consensus 507 niq~llkva~dnar~qekQiq~Ek~ELkmd~lr----------------erelreslekql~~ErklR~~~qkr~kkEkk 570 (641)
T KOG3915|consen 507 NIQGLLKVAIDNARAQEKQIQLEKTELKMDFLR----------------ERELRESLEKQLAMERKLRAIVQKRLKKEKK 570 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000279 428 EMERREKFLQKEYLRAEKRRL 448 (1729)
Q Consensus 428 eeer~eke~ekE~~r~Ek~r~ 448 (1729)
...+.+...+-+-++.|+..+
T Consensus 571 ~k~k~qe~L~~~sk~reqaeq 591 (641)
T KOG3915|consen 571 AKRKLQEALEFESKRREQAEQ 591 (641)
T ss_pred HHHHHHHHhhhccccchhhhh
No 163
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=21.50 E-value=1.2e+03 Score=26.31 Aligned_cols=90 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000279 381 QDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKREMERREKFLQKEYLRAEKRRLKEELRMEKQAAK 460 (1729)
Q Consensus 381 ~e~errkeEer~rkE~Er~ere~kkeeEr~erer~~EeEr~~rE~~reeer~eke~ekE~~r~Ek~r~kEe~r~ekE~~r 460 (1729)
.++...-...-..-+..+.+-+....+-+..-+..+.+.....+..+.+....++...+..+.+..+..+..+..-+.++
T Consensus 54 ~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek 133 (184)
T CHL00019 54 DNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQ 133 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 000279 461 RKVAIEKATA 470 (1729)
Q Consensus 461 ~k~~eEr~~~ 470 (1729)
+++..+-..+
T Consensus 134 ~~a~~~l~~e 143 (184)
T CHL00019 134 QRAINQVRQQ 143 (184)
T ss_pred HHHHHHHHHH
No 164
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=21.41 E-value=2.4e+03 Score=29.90 Aligned_cols=267 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCcccc--ccCCCCC-CCCCCccccCCCCcccccccCCCCCccCCCCCCCCCCcccccCCCCCCC
Q 000279 244 QSLSDQPYFHGSPIDGSRART--SFLHANE-PSSRVHGVQGHVARVRVLSQQDKPAHIFSSPNGGEDSLLQRESTSNNRK 320 (1729)
Q Consensus 244 q~~P~~~~~~~~p~~~~~~r~--~~~~g~~-~~~~~~~~~~~~~~~~~~s~~~~p~~~~psp~~~~~~~p~~~~~~~~~~ 320 (1729)
+-+|..++-|-...+.+.-.+ -|+++-+ |++.. ..-..+..+..++...+|.+.+.-.......|...... ++.
T Consensus 255 P~LP~~~Pnf~~~sdl~~~~~pvv~i~~Epsp~se~--~~~n~~~~s~~~pa~~~~~~~~~~~~~~~~~~~~~sqk-d~~ 331 (980)
T KOG0980|consen 255 PTLPEDAPNFLRQSDLESYITPVVYIPSEPSPVSED--EEMNLPDTSASTPAGHDPEPLDLFEAEPASDPPNASQK-DPR 331 (980)
T ss_pred CCCCCCCcccccccchhhcCCCceecCCCCCCCCCc--cccccccccccccccCCCCCccccccCcccCCcccccC-Chh
Q ss_pred CCCC----CCCCCCCCCCCCCCCcccccCcHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000279 321 NAQS----TSHPIFGTEDPYLLSDGQTFNNDAEQRMEKKRKC--DEARIAREVEANEIRIQKELERQDNLRRKNEERM-- 392 (1729)
Q Consensus 321 ~~~~----~~~~~~~~~~p~~~~~~~~~~~ke~~r~E~~rk~--eeer~~ke~e~eeer~~kE~Er~e~errkeEer~-- 392 (1729)
..++ ..-...+..-|......+..-..-..++..-.-+ +..+++.+..++.++++.|...+...|..-+...
T Consensus 332 ~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~ 411 (980)
T KOG0980|consen 332 ELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVL 411 (980)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000279 393 RKEMEKHERERRKEEERLMRERQREEERSLREQKREMERREKFLQKEYLRAEKRRLKEELRMEKQAAKRKVAIEKATARK 472 (1729)
Q Consensus 393 rkE~Er~ere~kkeeEr~erer~~EeEr~~rE~~reeer~eke~ekE~~r~Ek~r~kEe~r~ekE~~r~k~~eEr~~~~~ 472 (1729)
.++++++.-..+.+=++....--...+....-.++-.....+..-.+.-..+..++..+....-++..+...+-..+.+.
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~ 491 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTES 491 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q ss_pred HHHHhcchhhHHHHHHHHHHHhcCCCccccccchhhhcccc
Q 000279 473 MAKESMDLIEDEQLELMDLAAASKGLSSIIHLDLETLQNLD 513 (1729)
Q Consensus 473 ~ake~~e~~e~E~lel~klaa~sk~l~s~~~ld~e~Lq~l~ 513 (1729)
.++.......+..+-+.+++.....+..........++.+.
T Consensus 492 ~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~ 532 (980)
T KOG0980|consen 492 QAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLE 532 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
No 165
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=21.04 E-value=65 Score=42.07 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=21.9
Q ss_pred CHHHHHHHHHhcCcCCcchHHHHHHHHHHHH
Q 000279 1161 TVEAFDALLSSLDARGTRESHLRIMLQKIET 1191 (1729)
Q Consensus 1161 t~eeld~Ll~~Ld~rG~RE~~L~~~L~~~~~ 1191 (1729)
--++|-.-|..--.+|-|=+.|-++|+..+.
T Consensus 592 ~~~qF~rsit~rS~~g~rms~~fk~I~dlKK 622 (1001)
T COG5406 592 RGEQFLRSITSRSIRGNRMSDLFKEINDLKK 622 (1001)
T ss_pred cchhhhhheeeeeccCccHHHHHHHHHHHHh
Confidence 3456666666777788888888888776544
No 166
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.89 E-value=1.6e+03 Score=30.22 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=6.6
Q ss_pred cCCCCcCCCCC
Q 000279 184 REDGPILGMEF 194 (1729)
Q Consensus 184 redgp~lg~ef 194 (1729)
+..|=|.+-+|
T Consensus 190 ~~~gGi~~a~F 200 (652)
T COG2433 190 ESYGGISRAEF 200 (652)
T ss_pred eccCccceeEE
Confidence 44666666555
No 167
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=20.88 E-value=3.4e+03 Score=31.36 Aligned_cols=12 Identities=25% Similarity=0.108 Sum_probs=6.2
Q ss_pred ccCCccHHHHHH
Q 000279 644 LLNPLTWHEIFR 655 (1729)
Q Consensus 644 ~Ld~lTWpEILR 655 (1729)
.++..-|.||-+
T Consensus 1153 e~~~k~e~e~~~ 1164 (1930)
T KOG0161|consen 1153 ELNKKREAEVQK 1164 (1930)
T ss_pred HHHHHHHHHHHH
Confidence 345555555543
No 168
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=20.62 E-value=95 Score=41.74 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=19.0
Q ss_pred hhhchhHHHHHHhhhccCCCHHHHHHHHHHHHhhhhhhc
Q 000279 1383 ASWTDERRKTWGMKLNMSSSAEEVLQLLTILESGIKRSY 1421 (1729)
Q Consensus 1383 ~~W~~~~rk~W~~~l~~ass~~el~q~l~~le~~ik~d~ 1421 (1729)
.+.+..|||+---+|+.||--.-+ |.+|=.++|.|-
T Consensus 534 RyY~aLY~kLLdP~l~~sSKq~m~---LnLlykslK~D~ 569 (988)
T KOG2038|consen 534 RYYRALYRKLLDPRLMNSSKQAMF---LNLLYKSLKEDI 569 (988)
T ss_pred HHHHHHHHHhcCcccCchHHHHHH---HHHHHHHHHhhh
Confidence 345555566666666665544433 344445555553
No 169
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=20.27 E-value=57 Score=34.37 Aligned_cols=24 Identities=29% Similarity=0.753 Sum_probs=22.4
Q ss_pred ccccccccCccCCCCCcccccccc
Q 000279 1303 CDVCLDSYLCEDAHCPSCHRTFGA 1326 (1729)
Q Consensus 1303 C~~C~~~y~~~e~hC~~CH~tf~~ 1326 (1729)
|+.|....-..+-||+.|+.+...
T Consensus 1 CPvCg~~l~vt~l~C~~C~t~i~G 24 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGTEIEG 24 (113)
T ss_pred CCCCCCceEEEEEEcCCCCCEEEe
Confidence 899999999999999999999964
Done!