Query 000280
Match_columns 1728
No_of_seqs 876 out of 6601
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:35:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.5E-79 9.7E-84 782.3 50.1 625 22-695 15-678 (889)
2 PLN03210 Resistant to P. syrin 100.0 7.1E-59 1.5E-63 635.6 53.5 661 154-978 182-885 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 7.2E-39 1.6E-43 377.6 20.7 276 161-446 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 3.4E-30 7.4E-35 356.4 27.1 174 513-698 70-249 (968)
5 PLN00113 leucine-rich repeat r 100.0 7.4E-30 1.6E-34 353.0 27.6 170 534-714 69-243 (968)
6 PLN03210 Resistant to P. syrin 99.8 4.4E-20 9.6E-25 254.1 24.3 344 532-979 556-910 (1153)
7 KOG4194 Membrane glycoprotein 99.8 4.1E-20 8.9E-25 210.8 7.8 346 533-973 77-427 (873)
8 KOG0472 Leucine-rich repeat pr 99.8 1.7E-22 3.6E-27 220.6 -12.1 185 504-702 37-223 (565)
9 KOG0444 Cytoskeletal regulator 99.8 6.7E-21 1.5E-25 217.5 -2.4 338 515-977 35-377 (1255)
10 KOG0618 Serine/threonine phosp 99.8 2.2E-20 4.7E-25 225.4 0.8 476 519-1158 5-486 (1081)
11 KOG0444 Cytoskeletal regulator 99.8 9.9E-21 2.1E-25 216.1 -3.6 170 514-696 9-184 (1255)
12 KOG4194 Membrane glycoprotein 99.8 1.7E-19 3.8E-24 205.7 4.6 362 513-971 79-448 (873)
13 KOG0618 Serine/threonine phosp 99.7 2E-19 4.3E-24 217.2 -3.3 86 1059-1157 376-461 (1081)
14 KOG0472 Leucine-rich repeat pr 99.7 1.8E-19 3.9E-24 197.1 -9.7 386 520-973 145-539 (565)
15 KOG4658 Apoptotic ATPase [Sign 99.6 2.4E-13 5.2E-18 176.8 26.0 126 559-695 522-652 (889)
16 KOG0617 Ras suppressor protein 99.5 1.3E-16 2.9E-21 154.5 -4.6 167 524-704 23-192 (264)
17 KOG0617 Ras suppressor protein 99.4 1.4E-14 3.1E-19 140.6 -2.9 160 512-685 33-196 (264)
18 PRK04841 transcriptional regul 99.3 1.7E-10 3.6E-15 159.8 25.9 296 152-493 10-333 (903)
19 PRK15387 E3 ubiquitin-protein 99.3 1.6E-11 3.5E-16 156.1 13.8 117 560-700 201-317 (788)
20 PRK15370 E3 ubiquitin-protein 99.3 1.4E-11 3E-16 158.2 12.3 136 514-665 180-316 (754)
21 PRK15387 E3 ubiquitin-protein 99.3 4.9E-11 1.1E-15 151.8 15.7 255 515-875 204-458 (788)
22 PRK15370 E3 ubiquitin-protein 99.2 5.3E-11 1.1E-15 152.9 9.3 162 512-700 199-361 (754)
23 PRK00411 cdc6 cell division co 99.1 9E-09 1.9E-13 127.3 27.6 292 155-471 29-356 (394)
24 KOG4341 F-box protein containi 99.1 1.1E-12 2.3E-17 146.4 -6.7 301 1186-1589 138-439 (483)
25 KOG4341 F-box protein containi 99.1 2.4E-12 5.2E-17 143.6 -4.5 305 1214-1629 138-445 (483)
26 KOG4237 Extracellular matrix p 99.1 1.1E-11 2.3E-16 137.2 -1.1 134 528-665 38-176 (498)
27 PF01637 Arch_ATPase: Archaeal 99.0 4E-10 8.7E-15 128.9 9.5 202 158-362 1-233 (234)
28 TIGR03015 pepcterm_ATPase puta 99.0 1.9E-08 4.2E-13 117.3 23.5 186 174-367 40-242 (269)
29 COG2909 MalT ATP-dependent tra 99.0 8.5E-09 1.8E-13 126.6 20.3 293 154-494 17-340 (894)
30 TIGR02928 orc1/cdc6 family rep 99.0 8.7E-08 1.9E-12 117.2 28.3 300 156-472 15-349 (365)
31 KOG4237 Extracellular matrix p 99.0 3.2E-11 6.9E-16 133.4 -3.5 138 523-664 57-199 (498)
32 TIGR00635 ruvB Holliday juncti 98.9 1.8E-08 3.8E-13 119.7 18.5 276 155-475 3-291 (305)
33 PF05729 NACHT: NACHT domain 98.9 5.6E-09 1.2E-13 112.0 11.7 150 178-333 1-163 (166)
34 PRK00080 ruvB Holliday junctio 98.9 2.8E-08 6.1E-13 118.5 18.2 279 152-475 21-312 (328)
35 PF14580 LRR_9: Leucine-rich r 98.8 2E-09 4.3E-14 112.4 3.9 128 558-692 17-147 (175)
36 PF14580 LRR_9: Leucine-rich r 98.8 3.8E-09 8.2E-14 110.4 5.4 107 583-698 19-126 (175)
37 cd00116 LRR_RI Leucine-rich re 98.8 1.7E-09 3.7E-14 130.1 1.0 137 554-696 17-176 (319)
38 KOG0532 Leucine-rich repeat (L 98.7 8.2E-10 1.8E-14 128.0 -3.1 184 515-714 78-264 (722)
39 COG2256 MGS1 ATPase related to 98.7 7.4E-07 1.6E-11 101.0 20.2 256 153-446 21-302 (436)
40 PTZ00112 origin recognition co 98.7 1.4E-06 3E-11 108.1 23.9 206 156-368 755-987 (1164)
41 KOG0532 Leucine-rich repeat (L 98.7 1.1E-09 2.4E-14 127.0 -3.4 163 537-715 78-242 (722)
42 KOG1259 Nischarin, modulator o 98.6 3.7E-09 8E-14 112.5 -0.9 134 560-703 284-417 (490)
43 cd00116 LRR_RI Leucine-rich re 98.6 2.4E-08 5.3E-13 120.2 2.8 135 556-696 47-204 (319)
44 PRK13342 recombination factor 98.6 5.6E-07 1.2E-11 110.7 14.7 179 153-366 9-199 (413)
45 PRK07003 DNA polymerase III su 98.6 2.9E-06 6.2E-11 105.4 20.5 188 152-365 12-223 (830)
46 PRK06893 DNA replication initi 98.5 8.4E-07 1.8E-11 99.5 12.6 156 174-365 36-205 (229)
47 COG1474 CDC6 Cdc6-related prot 98.4 1.5E-05 3.3E-10 94.6 21.6 200 157-366 18-241 (366)
48 PRK14960 DNA polymerase III su 98.4 8.7E-06 1.9E-10 100.4 19.7 184 153-362 12-218 (702)
49 COG3903 Predicted ATPase [Gene 98.4 4E-07 8.7E-12 104.1 7.0 289 177-494 14-316 (414)
50 PF13173 AAA_14: AAA domain 98.4 5.9E-07 1.3E-11 90.8 7.2 120 178-325 3-127 (128)
51 PRK14949 DNA polymerase III su 98.4 4.1E-06 8.8E-11 106.4 15.4 186 153-364 13-221 (944)
52 PRK14961 DNA polymerase III su 98.4 1.4E-05 3E-10 96.4 19.4 180 153-362 13-219 (363)
53 PRK04195 replication factor C 98.4 2.8E-05 6E-10 97.7 22.7 186 152-368 10-207 (482)
54 PRK14963 DNA polymerase III su 98.3 2.1E-05 4.5E-10 97.7 20.4 190 153-361 11-215 (504)
55 COG3899 Predicted ATPase [Gene 98.3 1.9E-05 4E-10 104.6 21.0 311 158-491 2-385 (849)
56 KOG1259 Nischarin, modulator o 98.3 1.1E-07 2.4E-12 101.5 -0.2 127 533-665 283-411 (490)
57 PRK12402 replication factor C 98.3 7.5E-06 1.6E-10 99.1 15.8 203 153-364 12-227 (337)
58 KOG2028 ATPase related to the 98.3 6.5E-06 1.4E-10 90.9 13.0 173 156-358 138-331 (554)
59 COG4886 Leucine-rich repeat (L 98.3 6.3E-07 1.4E-11 111.0 5.9 166 534-713 116-283 (394)
60 COG4886 Leucine-rich repeat (L 98.3 6.1E-07 1.3E-11 111.2 5.6 170 514-698 118-290 (394)
61 PRK12323 DNA polymerase III su 98.3 7.4E-06 1.6E-10 100.7 14.1 181 153-363 13-225 (700)
62 TIGR02903 spore_lon_C ATP-depe 98.3 0.00016 3.4E-09 92.8 26.8 202 154-364 152-396 (615)
63 PRK00440 rfc replication facto 98.3 3.3E-05 7.1E-10 92.8 19.7 185 153-363 14-203 (319)
64 PRK06645 DNA polymerase III su 98.3 1.6E-05 3.4E-10 98.1 16.9 178 153-360 18-226 (507)
65 TIGR03420 DnaA_homol_Hda DnaA 98.3 5.4E-06 1.2E-10 93.9 11.9 171 160-365 21-203 (226)
66 PRK14962 DNA polymerase III su 98.2 1.7E-05 3.6E-10 97.7 16.6 189 153-367 11-223 (472)
67 PRK08691 DNA polymerase III su 98.2 3.6E-05 7.8E-10 96.1 19.4 181 152-362 12-219 (709)
68 PF13401 AAA_22: AAA domain; P 98.2 2.9E-06 6.3E-11 86.6 8.2 119 177-301 4-125 (131)
69 PTZ00202 tuzin; Provisional 98.2 2.4E-05 5.3E-10 90.4 15.7 165 151-333 257-434 (550)
70 PF05496 RuvB_N: Holliday junc 98.2 1.9E-05 4.1E-10 84.2 13.6 182 152-363 20-221 (233)
71 PRK15386 type III secretion pr 98.2 2.9E-06 6.4E-11 99.3 8.3 38 1448-1489 73-110 (426)
72 PRK14956 DNA polymerase III su 98.2 1.4E-05 3.1E-10 96.1 14.3 195 153-359 15-218 (484)
73 PLN03025 replication factor C 98.2 1.3E-05 2.7E-10 95.3 13.9 185 152-360 9-197 (319)
74 PRK05564 DNA polymerase III su 98.2 2.8E-05 6E-10 92.2 16.4 177 156-362 4-189 (313)
75 PRK14957 DNA polymerase III su 98.2 2.8E-05 6E-10 96.5 16.6 189 153-367 13-225 (546)
76 PF14516 AAA_35: AAA-like doma 98.2 0.00059 1.3E-08 81.1 27.3 211 152-370 7-246 (331)
77 KOG3207 Beta-tubulin folding c 98.2 5.6E-07 1.2E-11 102.1 1.3 185 514-702 123-318 (505)
78 PRK14964 DNA polymerase III su 98.1 3.4E-05 7.4E-10 94.2 16.3 182 153-360 10-214 (491)
79 cd00009 AAA The AAA+ (ATPases 98.1 1.4E-05 3.1E-10 83.7 11.0 129 159-303 1-131 (151)
80 PRK08084 DNA replication initi 98.1 3E-05 6.6E-10 87.3 13.9 170 163-366 31-212 (235)
81 PRK14958 DNA polymerase III su 98.1 8.6E-05 1.9E-09 92.6 19.1 185 152-362 12-219 (509)
82 PRK08727 hypothetical protein; 98.1 2.5E-05 5.4E-10 87.9 13.0 172 155-360 18-201 (233)
83 PRK07994 DNA polymerase III su 98.1 3.7E-05 7.9E-10 96.9 15.6 196 153-363 13-220 (647)
84 PRK09112 DNA polymerase III su 98.1 8.3E-05 1.8E-09 88.1 17.7 200 151-363 18-240 (351)
85 PF13191 AAA_16: AAA ATPase do 98.1 1E-05 2.3E-10 88.4 9.5 74 157-232 1-82 (185)
86 cd01128 rho_factor Transcripti 98.1 5.6E-06 1.2E-10 92.7 7.3 92 177-269 16-115 (249)
87 TIGR00678 holB DNA polymerase 98.1 5.2E-05 1.1E-09 82.7 14.4 160 167-359 3-187 (188)
88 PRK14951 DNA polymerase III su 98.1 5E-05 1.1E-09 95.5 15.9 198 153-363 13-225 (618)
89 PRK13341 recombination factor 98.1 3.8E-05 8.2E-10 99.0 15.1 172 153-358 25-212 (725)
90 PRK05896 DNA polymerase III su 98.1 3.8E-05 8.3E-10 95.1 14.5 199 152-365 12-223 (605)
91 PRK07940 DNA polymerase III su 98.1 7.2E-05 1.6E-09 89.9 16.3 173 155-363 4-213 (394)
92 PRK07471 DNA polymerase III su 98.0 0.00011 2.4E-09 87.6 17.5 199 152-363 15-238 (365)
93 PRK14959 DNA polymerase III su 98.0 0.00015 3.2E-09 90.5 19.2 185 153-367 13-225 (624)
94 PRK14955 DNA polymerase III su 98.0 3.7E-05 8.1E-10 93.9 13.9 202 153-362 13-227 (397)
95 TIGR02397 dnaX_nterm DNA polym 98.0 8.9E-05 1.9E-09 90.4 17.2 185 153-364 11-219 (355)
96 PRK09087 hypothetical protein; 98.0 4.3E-05 9.3E-10 85.0 12.9 147 176-367 43-199 (226)
97 PRK14971 DNA polymerase III su 98.0 0.00015 3.3E-09 92.4 19.5 183 154-363 15-222 (614)
98 PF05621 TniB: Bacterial TniB 98.0 0.0001 2.2E-09 82.8 15.3 196 162-361 43-259 (302)
99 TIGR01242 26Sp45 26S proteasom 98.0 7.2E-05 1.6E-09 90.7 15.6 176 154-357 120-328 (364)
100 PRK09376 rho transcription ter 98.0 1.7E-05 3.6E-10 91.9 9.3 91 178-269 170-268 (416)
101 PF13855 LRR_8: Leucine rich r 98.0 3.8E-06 8.3E-11 72.1 3.0 57 606-663 2-59 (61)
102 PLN03150 hypothetical protein; 98.0 8.6E-06 1.9E-10 105.3 7.4 101 562-663 420-525 (623)
103 PF00308 Bac_DnaA: Bacterial d 98.0 5.9E-05 1.3E-09 83.7 12.2 164 177-364 34-209 (219)
104 PRK14969 DNA polymerase III su 98.0 7.7E-05 1.7E-09 93.7 14.6 189 153-367 13-225 (527)
105 PF13855 LRR_8: Leucine rich r 97.9 7.2E-06 1.6E-10 70.3 3.8 57 561-617 2-61 (61)
106 KOG3207 Beta-tubulin folding c 97.9 2.3E-06 4.9E-11 97.4 0.7 183 531-723 118-317 (505)
107 PRK14952 DNA polymerase III su 97.9 0.00032 6.9E-09 88.2 19.1 186 153-368 10-225 (584)
108 PRK07133 DNA polymerase III su 97.9 0.00016 3.5E-09 91.6 16.4 182 152-363 14-219 (725)
109 PRK09111 DNA polymerase III su 97.9 0.00015 3.3E-09 91.6 16.2 199 153-364 21-234 (598)
110 PLN03150 hypothetical protein; 97.9 2.2E-05 4.7E-10 101.7 8.9 109 535-645 419-532 (623)
111 PRK08451 DNA polymerase III su 97.9 0.00021 4.6E-09 88.3 16.9 186 153-364 11-219 (535)
112 PRK14970 DNA polymerase III su 97.9 0.0002 4.3E-09 87.4 16.7 182 153-360 14-206 (367)
113 KOG1859 Leucine-rich repeat pr 97.9 2.8E-07 6.1E-12 110.0 -7.8 177 510-701 107-295 (1096)
114 KOG2227 Pre-initiation complex 97.9 0.0011 2.4E-08 77.1 21.0 199 154-360 148-365 (529)
115 KOG2120 SCF ubiquitin ligase, 97.9 6.4E-07 1.4E-11 96.2 -4.7 187 1376-1648 185-373 (419)
116 PRK14087 dnaA chromosomal repl 97.9 0.0001 2.2E-09 90.9 13.5 170 177-367 141-323 (450)
117 PRK14954 DNA polymerase III su 97.9 0.00021 4.5E-09 90.5 16.2 203 153-363 13-229 (620)
118 PRK08903 DnaA regulatory inact 97.8 0.00013 2.8E-09 82.4 12.8 174 155-367 17-203 (227)
119 PRK07764 DNA polymerase III su 97.8 0.00022 4.7E-09 93.3 16.3 179 153-361 12-219 (824)
120 PRK03992 proteasome-activating 97.8 0.00018 3.8E-09 87.5 14.6 178 155-357 130-337 (389)
121 PRK05642 DNA replication initi 97.8 0.00022 4.8E-09 80.2 14.1 156 177-367 45-212 (234)
122 KOG2120 SCF ubiquitin ligase, 97.8 1.1E-06 2.4E-11 94.4 -4.5 123 1182-1315 206-328 (419)
123 KOG1947 Leucine rich repeat pr 97.8 2.4E-06 5.1E-11 109.7 -2.7 39 1552-1590 403-441 (482)
124 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00017 3.8E-09 95.6 14.5 183 153-357 184-390 (852)
125 PRK06305 DNA polymerase III su 97.8 0.00038 8.2E-09 85.9 16.5 184 153-363 14-223 (451)
126 TIGR00767 rho transcription te 97.8 4.9E-05 1.1E-09 88.7 8.2 92 177-269 168-267 (415)
127 PRK15386 type III secretion pr 97.8 5.2E-05 1.1E-09 89.1 8.3 71 1445-1558 50-120 (426)
128 TIGR02639 ClpA ATP-dependent C 97.8 0.00018 4E-09 95.0 14.5 159 154-333 180-358 (731)
129 PRK14953 DNA polymerase III su 97.8 0.00045 9.7E-09 85.7 16.9 182 153-364 13-221 (486)
130 KOG0989 Replication factor C, 97.8 0.00013 2.8E-09 80.0 10.3 183 152-357 32-224 (346)
131 PRK06647 DNA polymerase III su 97.7 0.00054 1.2E-08 86.4 17.1 181 152-363 12-220 (563)
132 PF12799 LRR_4: Leucine Rich r 97.7 3.1E-05 6.7E-10 60.5 3.6 41 605-646 1-41 (44)
133 PRK14948 DNA polymerase III su 97.7 0.00065 1.4E-08 86.7 17.2 200 153-365 13-224 (620)
134 PRK14950 DNA polymerase III su 97.7 0.00061 1.3E-08 87.4 16.8 198 154-365 14-223 (585)
135 PHA02544 44 clamp loader, smal 97.7 0.00075 1.6E-08 80.7 16.6 149 152-331 17-171 (316)
136 TIGR02881 spore_V_K stage V sp 97.7 0.00025 5.4E-09 81.7 12.0 155 156-334 6-192 (261)
137 KOG0531 Protein phosphatase 1, 97.7 8E-06 1.7E-10 101.1 -0.5 102 533-638 94-196 (414)
138 CHL00095 clpC Clp protease ATP 97.7 0.00026 5.6E-09 94.8 13.4 164 156-333 179-354 (821)
139 PF12799 LRR_4: Leucine Rich r 97.7 5.1E-05 1.1E-09 59.3 3.9 38 561-598 2-39 (44)
140 PRK05563 DNA polymerase III su 97.6 0.00082 1.8E-08 85.3 16.6 195 152-361 12-218 (559)
141 CHL00181 cbbX CbbX; Provisiona 97.6 0.0011 2.4E-08 76.6 16.1 133 178-334 60-210 (287)
142 TIGR03689 pup_AAA proteasome A 97.6 0.00093 2E-08 82.2 16.1 163 154-335 180-380 (512)
143 PTZ00454 26S protease regulato 97.6 0.0017 3.6E-08 78.5 18.1 176 154-357 143-351 (398)
144 TIGR00362 DnaA chromosomal rep 97.6 0.00052 1.1E-08 84.7 13.6 161 177-361 136-308 (405)
145 KOG2543 Origin recognition com 97.6 0.00051 1.1E-08 77.7 11.8 168 156-331 6-191 (438)
146 KOG1947 Leucine rich repeat pr 97.6 4.9E-06 1.1E-10 106.8 -4.6 227 1371-1655 209-444 (482)
147 COG1222 RPT1 ATP-dependent 26S 97.6 0.0018 3.9E-08 73.0 15.9 186 153-368 148-372 (406)
148 PRK14088 dnaA chromosomal repl 97.6 0.00099 2.2E-08 82.2 15.4 161 177-361 130-303 (440)
149 PRK14965 DNA polymerase III su 97.5 0.002 4.3E-08 82.3 18.4 183 153-365 13-223 (576)
150 TIGR02880 cbbX_cfxQ probable R 97.5 0.00098 2.1E-08 77.3 14.2 132 179-334 60-209 (284)
151 PTZ00361 26 proteosome regulat 97.5 0.00068 1.5E-08 82.3 13.0 181 153-358 180-390 (438)
152 KOG0531 Protein phosphatase 1, 97.5 2.6E-05 5.6E-10 96.6 -0.1 107 557-666 92-199 (414)
153 KOG1859 Leucine-rich repeat pr 97.5 6.3E-06 1.4E-10 98.8 -5.1 119 585-716 166-288 (1096)
154 PRK11331 5-methylcytosine-spec 97.5 0.00047 1E-08 82.2 10.3 108 156-269 175-284 (459)
155 PRK14086 dnaA chromosomal repl 97.5 0.0011 2.3E-08 82.6 13.7 160 177-361 314-486 (617)
156 PRK00149 dnaA chromosomal repl 97.5 0.0016 3.4E-08 81.5 15.5 160 177-361 148-320 (450)
157 PF10443 RNA12: RNA12 protein; 97.4 0.0074 1.6E-07 71.1 19.1 196 161-373 1-288 (431)
158 KOG1909 Ran GTPase-activating 97.4 2.9E-05 6.4E-10 86.3 -0.7 85 557-642 27-133 (382)
159 PRK05707 DNA polymerase III su 97.4 0.0031 6.7E-08 74.3 15.6 153 176-363 21-203 (328)
160 COG0593 DnaA ATPase involved i 97.4 0.011 2.3E-07 70.3 19.9 135 176-334 112-258 (408)
161 TIGR01241 FtsH_fam ATP-depende 97.4 0.0025 5.3E-08 80.8 15.8 182 152-357 51-260 (495)
162 PRK11034 clpA ATP-dependent Cl 97.3 0.00055 1.2E-08 89.0 9.8 157 156-333 186-362 (758)
163 COG2255 RuvB Holliday junction 97.3 0.0032 6.9E-08 68.7 13.5 176 152-359 22-219 (332)
164 KOG3665 ZYG-1-like serine/thre 97.3 0.00011 2.3E-09 94.5 2.8 57 581-637 171-229 (699)
165 PRK10536 hypothetical protein; 97.3 0.0028 6.1E-08 70.0 13.3 59 153-213 52-110 (262)
166 KOG0739 AAA+-type ATPase [Post 97.3 0.056 1.2E-06 59.2 22.5 180 155-357 132-335 (439)
167 PRK07399 DNA polymerase III su 97.3 0.0036 7.8E-08 73.3 15.0 196 156-363 4-221 (314)
168 PRK10865 protein disaggregatio 97.3 0.0025 5.4E-08 85.3 15.2 158 154-333 176-354 (857)
169 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0023 5E-08 86.1 14.8 158 154-333 171-349 (852)
170 PRK12422 chromosomal replicati 97.3 0.002 4.4E-08 79.2 12.8 154 177-357 141-307 (445)
171 CHL00176 ftsH cell division pr 97.2 0.0073 1.6E-07 77.3 17.9 174 155-356 182-387 (638)
172 COG1223 Predicted ATPase (AAA+ 97.2 0.0026 5.7E-08 67.8 11.1 179 156-357 121-319 (368)
173 TIGR00602 rad24 checkpoint pro 97.2 0.001 2.3E-08 84.1 9.7 51 152-202 80-135 (637)
174 COG1373 Predicted ATPase (AAA+ 97.2 0.0033 7.1E-08 76.4 13.4 138 159-328 20-162 (398)
175 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0098 2.1E-07 73.6 17.6 182 155-357 227-429 (489)
176 PRK06620 hypothetical protein; 97.2 0.0011 2.5E-08 73.0 8.5 137 178-361 45-187 (214)
177 PF00004 AAA: ATPase family as 97.2 0.00051 1.1E-08 70.1 5.4 69 180-269 1-70 (132)
178 KOG3665 ZYG-1-like serine/thre 97.1 0.00022 4.7E-09 91.8 2.8 105 532-638 146-260 (699)
179 PF05673 DUF815: Protein of un 97.1 0.012 2.7E-07 64.2 15.5 52 153-204 24-79 (249)
180 COG0466 Lon ATP-dependent Lon 97.1 0.0066 1.4E-07 74.8 14.0 156 157-333 324-508 (782)
181 KOG0730 AAA+-type ATPase [Post 97.0 0.027 5.9E-07 68.9 18.8 155 155-335 433-617 (693)
182 KOG2004 Mitochondrial ATP-depe 97.0 0.023 4.9E-07 69.7 18.0 157 156-333 411-596 (906)
183 PRK08058 DNA polymerase III su 97.0 0.008 1.7E-07 71.5 14.5 144 158-331 7-180 (329)
184 KOG0733 Nuclear AAA ATPase (VC 97.0 0.014 3.1E-07 70.0 15.9 176 155-357 189-396 (802)
185 KOG0731 AAA+-type ATPase conta 97.0 0.0068 1.5E-07 76.4 14.1 178 156-360 311-521 (774)
186 PRK08116 hypothetical protein; 97.0 0.0057 1.2E-07 70.2 12.1 105 178-302 115-221 (268)
187 PRK08769 DNA polymerase III su 96.9 0.015 3.2E-07 67.9 15.2 173 163-363 11-208 (319)
188 PRK06090 DNA polymerase III su 96.9 0.033 7.3E-07 64.9 18.0 162 163-363 10-201 (319)
189 COG3267 ExeA Type II secretory 96.9 0.044 9.6E-07 59.6 17.1 193 162-365 37-247 (269)
190 PRK06871 DNA polymerase III su 96.9 0.022 4.8E-07 66.6 16.0 175 164-360 10-200 (325)
191 KOG2982 Uncharacterized conser 96.9 0.00016 3.5E-09 78.3 -1.5 78 582-664 70-157 (418)
192 KOG4579 Leucine-rich repeat (L 96.8 0.00016 3.5E-09 69.3 -1.5 102 560-663 27-133 (177)
193 smart00382 AAA ATPases associa 96.8 0.0028 6.1E-08 65.6 7.6 90 178-271 3-92 (148)
194 KOG0741 AAA+-type ATPase [Post 96.8 0.028 6E-07 66.4 15.7 152 176-353 537-704 (744)
195 KOG1514 Origin recognition com 96.8 0.034 7.4E-07 68.5 16.9 199 156-366 396-624 (767)
196 PRK12608 transcription termina 96.8 0.0078 1.7E-07 70.4 11.1 103 166-269 121-232 (380)
197 PF13177 DNA_pol3_delta2: DNA 96.7 0.0071 1.5E-07 63.7 9.7 136 160-320 1-161 (162)
198 TIGR00763 lon ATP-dependent pr 96.7 0.1 2.2E-06 69.8 22.8 46 157-202 321-372 (775)
199 KOG0991 Replication factor C, 96.7 0.0035 7.6E-08 65.8 6.7 100 153-269 24-125 (333)
200 PRK12377 putative replication 96.7 0.0039 8.4E-08 70.0 7.6 76 176-269 100-175 (248)
201 TIGR01243 CDC48 AAA family ATP 96.7 0.017 3.6E-07 77.1 15.0 174 156-357 453-657 (733)
202 KOG0733 Nuclear AAA ATPase (VC 96.7 0.018 3.9E-07 69.2 13.1 154 177-358 545-719 (802)
203 PHA00729 NTP-binding motif con 96.6 0.0089 1.9E-07 65.2 9.8 35 167-201 7-41 (226)
204 PRK08118 topology modulation p 96.6 0.00099 2.2E-08 70.5 2.5 35 178-212 2-37 (167)
205 TIGR02639 ClpA ATP-dependent C 96.6 0.015 3.1E-07 77.3 13.9 102 157-269 455-565 (731)
206 PRK10787 DNA-binding ATP-depen 96.6 0.062 1.3E-06 71.0 19.1 163 156-333 322-506 (784)
207 PF02562 PhoH: PhoH-like prote 96.6 0.0022 4.7E-08 69.1 4.5 52 161-214 5-56 (205)
208 KOG1644 U2-associated snRNP A' 96.6 0.0032 7E-08 65.2 5.4 83 556-638 60-150 (233)
209 PRK12727 flagellar biosynthesi 96.5 0.084 1.8E-06 64.7 17.9 88 177-267 350-438 (559)
210 COG2812 DnaX DNA polymerase II 96.5 0.009 2E-07 73.1 9.7 190 153-358 13-215 (515)
211 KOG4579 Leucine-rich repeat (L 96.5 0.00068 1.5E-08 65.2 -0.1 74 549-622 66-140 (177)
212 PRK07993 DNA polymerase III su 96.5 0.05 1.1E-06 64.4 15.5 165 163-360 9-201 (334)
213 PF00448 SRP54: SRP54-type pro 96.5 0.017 3.6E-07 62.8 10.6 89 177-267 1-93 (196)
214 PRK06964 DNA polymerase III su 96.5 0.06 1.3E-06 63.5 15.8 92 256-363 131-225 (342)
215 TIGR03345 VI_ClpV1 type VI sec 96.5 0.011 2.3E-07 79.0 10.9 106 156-269 566-680 (852)
216 PRK07952 DNA replication prote 96.5 0.0094 2E-07 66.7 8.8 90 163-269 83-174 (244)
217 KOG1644 U2-associated snRNP A' 96.4 0.0036 7.7E-08 64.9 4.7 104 584-693 43-148 (233)
218 TIGR02640 gas_vesic_GvpN gas v 96.4 0.056 1.2E-06 62.2 14.9 56 163-225 9-64 (262)
219 COG0542 clpA ATP-binding subun 96.4 0.08 1.7E-06 67.8 17.2 102 156-269 491-605 (786)
220 PF04665 Pox_A32: Poxvirus A32 96.4 0.0094 2E-07 65.8 8.0 36 178-215 14-49 (241)
221 KOG2228 Origin recognition com 96.3 0.04 8.7E-07 61.8 12.5 171 155-333 23-219 (408)
222 KOG0734 AAA+-type ATPase conta 96.3 0.0093 2E-07 70.2 8.0 89 160-269 311-408 (752)
223 TIGR01243 CDC48 AAA family ATP 96.3 0.04 8.7E-07 73.5 15.2 176 155-359 177-383 (733)
224 KOG0735 AAA+-type ATPase [Post 96.3 0.012 2.7E-07 71.8 9.0 160 177-356 431-608 (952)
225 PRK08181 transposase; Validate 96.3 0.0057 1.2E-07 69.6 6.0 79 170-269 101-179 (269)
226 TIGR02237 recomb_radB DNA repa 96.3 0.015 3.3E-07 64.6 9.1 88 177-268 12-108 (209)
227 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.017 3.7E-07 65.7 9.0 91 177-268 19-126 (235)
228 TIGR02012 tigrfam_recA protein 96.1 0.017 3.7E-07 67.0 8.9 86 177-269 55-145 (321)
229 KOG0743 AAA+-type ATPase [Post 96.1 0.89 1.9E-05 54.0 22.3 175 178-386 236-435 (457)
230 KOG0728 26S proteasome regulat 96.1 0.15 3.3E-06 54.3 14.5 152 156-333 147-331 (404)
231 cd00983 recA RecA is a bacter 96.0 0.019 4.2E-07 66.6 8.6 86 177-269 55-145 (325)
232 COG1875 NYN ribonuclease and A 96.0 0.022 4.9E-07 64.5 8.7 137 156-302 224-388 (436)
233 KOG1909 Ran GTPase-activating 96.0 0.0025 5.4E-08 71.5 1.3 85 533-617 156-253 (382)
234 PF01695 IstB_IS21: IstB-like 96.0 0.0063 1.4E-07 65.0 4.3 74 177-269 47-120 (178)
235 PRK00771 signal recognition pa 96.0 0.17 3.6E-06 61.9 16.8 88 176-267 94-185 (437)
236 PRK09354 recA recombinase A; P 96.0 0.024 5.1E-07 66.4 9.1 86 177-269 60-150 (349)
237 TIGR03346 chaperone_ClpB ATP-d 96.0 0.046 9.9E-07 73.8 13.2 106 156-269 565-679 (852)
238 cd01393 recA_like RecA is a b 96.0 0.038 8.3E-07 62.4 10.7 92 177-269 19-126 (226)
239 TIGR02902 spore_lonB ATP-depen 96.0 0.022 4.7E-07 72.3 9.5 49 154-202 63-111 (531)
240 PRK10865 protein disaggregatio 96.0 0.063 1.4E-06 72.1 14.3 106 156-269 568-682 (857)
241 COG0464 SpoVK ATPases of the A 95.9 0.062 1.3E-06 68.5 13.4 159 176-355 275-445 (494)
242 PF08423 Rad51: Rad51; InterP 95.9 0.037 8E-07 63.1 10.1 90 178-268 39-144 (256)
243 PRK06835 DNA replication prote 95.8 0.021 4.5E-07 67.2 7.9 37 177-215 183-219 (329)
244 COG0470 HolB ATPase involved i 95.8 0.051 1.1E-06 65.4 11.6 142 158-323 3-171 (325)
245 smart00763 AAA_PrkA PrkA AAA d 95.8 0.013 2.8E-07 68.3 6.0 47 157-203 52-104 (361)
246 TIGR01425 SRP54_euk signal rec 95.8 0.53 1.1E-05 57.1 19.6 38 176-215 99-136 (429)
247 KOG2739 Leucine-rich acidic nu 95.8 0.0058 1.3E-07 66.4 2.8 54 585-638 45-101 (260)
248 PRK06526 transposase; Provisio 95.8 0.011 2.3E-07 67.1 5.1 74 177-269 98-171 (254)
249 PRK08699 DNA polymerase III su 95.8 0.1 2.2E-06 61.5 13.3 157 174-359 18-202 (325)
250 PF13207 AAA_17: AAA domain; P 95.7 0.0084 1.8E-07 60.0 3.7 23 179-201 1-23 (121)
251 PF07693 KAP_NTPase: KAP famil 95.7 0.3 6.4E-06 58.7 17.6 44 161-204 1-47 (325)
252 TIGR02238 recomb_DMC1 meiotic 95.7 0.032 7E-07 65.2 8.8 91 177-268 96-202 (313)
253 KOG2035 Replication factor C, 95.7 0.25 5.5E-06 54.0 14.5 207 157-386 14-262 (351)
254 cd01133 F1-ATPase_beta F1 ATP 95.7 0.065 1.4E-06 60.5 10.6 91 178-269 70-175 (274)
255 KOG0744 AAA+-type ATPase [Post 95.7 0.042 9.2E-07 61.1 8.7 27 177-203 177-203 (423)
256 KOG0736 Peroxisome assembly fa 95.6 0.073 1.6E-06 66.1 11.3 94 155-269 671-776 (953)
257 KOG2123 Uncharacterized conser 95.6 0.0012 2.6E-08 71.1 -3.2 106 581-691 17-123 (388)
258 COG0542 clpA ATP-binding subun 95.6 0.013 2.9E-07 74.6 5.3 159 155-333 169-346 (786)
259 PRK10733 hflB ATP-dependent me 95.6 0.091 2E-06 68.5 13.1 174 155-356 151-356 (644)
260 KOG1969 DNA replication checkp 95.6 0.033 7.2E-07 68.6 8.3 74 176-269 325-399 (877)
261 COG1484 DnaC DNA replication p 95.6 0.06 1.3E-06 61.1 10.0 76 176-269 104-179 (254)
262 COG1102 Cmk Cytidylate kinase 95.5 0.034 7.5E-07 55.7 6.7 46 179-237 2-47 (179)
263 KOG2982 Uncharacterized conser 95.5 0.0056 1.2E-07 66.8 1.3 122 906-1041 144-265 (418)
264 PRK09361 radB DNA repair and r 95.5 0.046 9.9E-07 61.6 8.8 86 177-267 23-117 (225)
265 PLN03187 meiotic recombination 95.5 0.045 9.8E-07 64.5 8.9 91 177-268 126-232 (344)
266 PRK10867 signal recognition pa 95.5 0.84 1.8E-05 55.8 19.9 40 176-216 99-138 (433)
267 PRK04132 replication factor C 95.5 0.17 3.7E-06 66.4 14.8 154 183-361 570-729 (846)
268 PRK09183 transposase/IS protei 95.5 0.025 5.5E-07 64.5 6.7 35 178-214 103-137 (259)
269 KOG0727 26S proteasome regulat 95.5 0.8 1.7E-05 49.1 16.9 93 156-269 155-260 (408)
270 cd01120 RecA-like_NTPases RecA 95.5 0.069 1.5E-06 56.7 9.7 40 179-220 1-40 (165)
271 PRK07261 topology modulation p 95.4 0.024 5.2E-07 60.4 6.0 34 179-212 2-36 (171)
272 PRK04296 thymidine kinase; Pro 95.4 0.017 3.7E-07 62.8 4.9 112 178-304 3-118 (190)
273 PRK08939 primosomal protein Dn 95.4 0.082 1.8E-06 61.8 10.8 95 160-273 135-235 (306)
274 PRK06696 uridine kinase; Valid 95.4 0.023 5E-07 63.7 6.1 44 160-203 2-48 (223)
275 PRK11034 clpA ATP-dependent Cl 95.4 0.023 4.9E-07 74.3 6.6 102 157-269 459-569 (758)
276 PRK14722 flhF flagellar biosyn 95.4 0.06 1.3E-06 64.0 9.4 89 177-268 137-226 (374)
277 CHL00095 clpC Clp protease ATP 95.3 0.034 7.4E-07 74.8 8.4 106 156-269 509-623 (821)
278 PRK05541 adenylylsulfate kinas 95.2 0.042 9.2E-07 59.1 7.1 37 176-214 6-42 (176)
279 PRK04301 radA DNA repair and r 95.1 0.072 1.6E-06 63.3 9.4 57 177-234 102-162 (317)
280 PHA02244 ATPase-like protein 95.1 0.084 1.8E-06 61.7 9.4 33 167-201 111-143 (383)
281 TIGR03877 thermo_KaiC_1 KaiC d 95.1 0.12 2.6E-06 58.6 10.6 87 177-268 21-137 (237)
282 PRK11889 flhF flagellar biosyn 95.1 0.16 3.5E-06 59.8 11.6 90 176-268 240-331 (436)
283 PRK06921 hypothetical protein; 95.1 0.081 1.7E-06 60.6 9.1 72 176-267 116-187 (266)
284 PLN00020 ribulose bisphosphate 95.0 0.051 1.1E-06 62.9 7.2 28 175-202 146-173 (413)
285 PF01583 APS_kinase: Adenylyls 95.0 0.023 5E-07 58.3 4.1 35 178-214 3-37 (156)
286 PRK09270 nucleoside triphospha 95.0 0.16 3.4E-06 57.3 11.3 29 175-203 31-59 (229)
287 PLN03186 DNA repair protein RA 95.0 0.068 1.5E-06 63.2 8.4 91 177-268 123-229 (342)
288 PF00154 RecA: recA bacterial 95.0 0.11 2.3E-06 60.3 9.8 86 177-269 53-143 (322)
289 TIGR02239 recomb_RAD51 DNA rep 95.0 0.076 1.6E-06 62.5 8.7 57 177-234 96-156 (316)
290 KOG0652 26S proteasome regulat 94.9 0.63 1.4E-05 50.1 14.3 52 151-202 166-230 (424)
291 cd01125 repA Hexameric Replica 94.9 0.074 1.6E-06 60.4 8.4 144 179-327 3-198 (239)
292 TIGR03499 FlhF flagellar biosy 94.9 0.11 2.5E-06 60.2 10.0 88 176-266 193-281 (282)
293 cd01394 radB RadB. The archaea 94.9 0.082 1.8E-06 59.2 8.6 42 177-220 19-60 (218)
294 TIGR02236 recomb_radA DNA repa 94.9 0.097 2.1E-06 62.1 9.4 57 177-234 95-155 (310)
295 COG5238 RNA1 Ran GTPase-activa 94.9 0.0096 2.1E-07 64.2 0.8 127 557-703 27-175 (388)
296 PF03215 Rad17: Rad17 cell cyc 94.8 0.14 2.9E-06 64.2 10.9 57 155-215 18-79 (519)
297 PRK12723 flagellar biosynthesi 94.8 0.19 4E-06 60.5 11.6 90 176-268 173-265 (388)
298 PRK07132 DNA polymerase III su 94.8 0.52 1.1E-05 54.8 14.8 167 165-362 5-184 (299)
299 PTZ00035 Rad51 protein; Provis 94.8 0.11 2.4E-06 61.7 9.4 91 177-268 118-224 (337)
300 TIGR03878 thermo_KaiC_2 KaiC d 94.8 0.12 2.7E-06 59.1 9.6 41 177-219 36-76 (259)
301 PF06309 Torsin: Torsin; Inte 94.7 0.16 3.5E-06 49.5 8.7 45 157-201 26-77 (127)
302 PRK14974 cell division protein 94.7 0.27 6E-06 57.9 12.4 91 176-269 139-234 (336)
303 COG0468 RecA RecA/RadA recombi 94.7 0.18 4E-06 57.2 10.4 89 177-269 60-153 (279)
304 COG1618 Predicted nucleotide k 94.7 0.04 8.7E-07 55.3 4.5 31 177-208 5-35 (179)
305 PRK12726 flagellar biosynthesi 94.6 0.2 4.4E-06 58.8 10.7 90 176-268 205-296 (407)
306 COG0467 RAD55 RecA-superfamily 94.5 0.21 4.5E-06 57.7 10.9 42 176-219 22-63 (260)
307 PRK04328 hypothetical protein; 94.5 0.14 3.1E-06 58.3 9.3 41 177-219 23-63 (249)
308 PF00560 LRR_1: Leucine Rich R 94.5 0.013 2.7E-07 38.1 0.4 20 607-626 2-21 (22)
309 PRK12724 flagellar biosynthesi 94.5 0.13 2.7E-06 61.6 8.9 85 177-266 223-308 (432)
310 COG0465 HflB ATP-dependent Zn 94.5 0.21 4.6E-06 62.3 11.1 176 155-358 149-356 (596)
311 cd01135 V_A-ATPase_B V/A-type 94.4 0.14 3E-06 57.8 8.6 92 178-269 70-178 (276)
312 PF13481 AAA_25: AAA domain; P 94.4 0.056 1.2E-06 59.3 5.7 42 178-219 33-82 (193)
313 KOG0729 26S proteasome regulat 94.4 0.21 4.5E-06 53.8 9.3 47 155-201 176-235 (435)
314 cd03115 SRP The signal recogni 94.4 0.18 3.8E-06 54.2 9.3 88 179-268 2-93 (173)
315 PRK06547 hypothetical protein; 94.4 0.056 1.2E-06 57.4 5.3 35 167-201 5-39 (172)
316 KOG0735 AAA+-type ATPase [Post 94.3 0.7 1.5E-05 57.3 14.6 176 156-359 667-872 (952)
317 PF06745 KaiC: KaiC; InterPro 94.3 0.094 2E-06 59.1 7.3 89 177-269 19-127 (226)
318 PRK06067 flagellar accessory p 94.3 0.17 3.6E-06 57.4 9.4 86 177-267 25-130 (234)
319 PRK08533 flagellar accessory p 94.3 0.21 4.5E-06 56.1 9.9 48 177-228 24-71 (230)
320 COG1066 Sms Predicted ATP-depe 94.3 0.11 2.4E-06 60.3 7.6 98 166-269 80-180 (456)
321 TIGR00959 ffh signal recogniti 94.3 0.36 7.9E-06 58.9 12.5 91 176-267 98-192 (428)
322 PF00006 ATP-synt_ab: ATP synt 94.3 0.17 3.7E-06 55.5 8.8 87 178-268 16-116 (215)
323 PRK05703 flhF flagellar biosyn 94.2 0.31 6.8E-06 59.8 11.8 87 178-267 222-309 (424)
324 COG1419 FlhF Flagellar GTP-bin 94.2 2.2 4.8E-05 50.5 17.9 99 165-267 187-291 (407)
325 PRK15455 PrkA family serine pr 94.2 0.061 1.3E-06 66.0 5.5 47 156-202 76-128 (644)
326 KOG0737 AAA+-type ATPase [Post 94.2 0.39 8.4E-06 55.3 11.4 46 157-202 93-152 (386)
327 PRK07667 uridine kinase; Provi 94.1 0.075 1.6E-06 58.0 5.7 39 165-203 3-43 (193)
328 PRK13531 regulatory ATPase Rav 94.1 0.065 1.4E-06 65.0 5.5 45 156-202 20-64 (498)
329 TIGR00064 ftsY signal recognit 94.1 0.28 6.1E-06 56.4 10.5 89 176-268 71-165 (272)
330 KOG3347 Predicted nucleotide k 94.1 0.072 1.6E-06 52.5 4.7 69 177-255 7-75 (176)
331 KOG2739 Leucine-rich acidic nu 94.1 0.03 6.5E-07 61.1 2.4 81 581-662 63-152 (260)
332 cd03281 ABC_MSH5_euk MutS5 hom 94.1 0.034 7.3E-07 61.6 2.9 24 177-200 29-52 (213)
333 TIGR01359 UMP_CMP_kin_fam UMP- 94.0 0.13 2.8E-06 55.8 7.4 23 179-201 1-23 (183)
334 TIGR01069 mutS2 MutS2 family p 94.0 0.048 1E-06 71.9 4.6 194 176-386 321-524 (771)
335 PF13238 AAA_18: AAA domain; P 94.0 0.043 9.3E-07 55.5 3.3 22 180-201 1-22 (129)
336 COG3640 CooC CO dehydrogenase 94.0 0.1 2.2E-06 56.0 5.9 51 179-237 2-52 (255)
337 PF03308 ArgK: ArgK protein; 93.8 0.11 2.3E-06 57.3 6.1 59 164-222 14-74 (266)
338 PRK12597 F0F1 ATP synthase sub 93.8 0.27 5.8E-06 60.2 10.1 91 178-269 144-249 (461)
339 cd01124 KaiC KaiC is a circadi 93.8 0.23 4.9E-06 54.2 8.8 85 180-269 2-107 (187)
340 COG1428 Deoxynucleoside kinase 93.8 0.091 2E-06 55.8 5.2 48 177-229 4-51 (216)
341 COG1703 ArgK Putative periplas 93.8 0.11 2.4E-06 57.8 6.1 60 166-225 38-99 (323)
342 PRK12678 transcription termina 93.8 0.13 2.7E-06 63.0 7.0 91 178-269 417-515 (672)
343 COG4088 Predicted nucleotide k 93.7 0.08 1.7E-06 55.2 4.6 27 178-204 2-28 (261)
344 PF14532 Sigma54_activ_2: Sigm 93.7 0.031 6.7E-07 57.3 1.6 44 159-202 1-46 (138)
345 cd01121 Sms Sms (bacterial rad 93.7 0.17 3.6E-06 60.9 8.0 87 177-268 82-169 (372)
346 TIGR03305 alt_F1F0_F1_bet alte 93.6 0.19 4.2E-06 60.9 8.4 91 178-269 139-244 (449)
347 cd03214 ABC_Iron-Siderophores_ 93.6 0.18 4E-06 54.4 7.6 119 178-305 26-161 (180)
348 TIGR00554 panK_bact pantothena 93.6 0.25 5.4E-06 56.9 9.0 46 175-220 60-105 (290)
349 cd02027 APSK Adenosine 5'-phos 93.6 0.17 3.7E-06 52.5 7.0 24 179-202 1-24 (149)
350 COG0541 Ffh Signal recognition 93.6 6.9 0.00015 46.7 20.5 88 176-266 99-191 (451)
351 PRK09519 recA DNA recombinatio 93.6 0.21 4.6E-06 64.7 9.2 86 177-269 60-150 (790)
352 COG2884 FtsE Predicted ATPase 93.6 0.13 2.8E-06 53.3 5.7 27 177-203 28-54 (223)
353 PF07728 AAA_5: AAA domain (dy 93.6 0.15 3.2E-06 52.4 6.5 76 180-269 2-77 (139)
354 PF10236 DAP3: Mitochondrial r 93.5 4.9 0.00011 47.3 19.7 47 314-360 258-306 (309)
355 TIGR02858 spore_III_AA stage I 93.5 0.084 1.8E-06 60.2 4.9 124 165-305 98-232 (270)
356 cd00544 CobU Adenosylcobinamid 93.5 0.22 4.9E-06 52.6 7.7 82 180-268 2-84 (169)
357 cd03216 ABC_Carb_Monos_I This 93.5 0.16 3.5E-06 53.7 6.7 114 178-305 27-145 (163)
358 cd00561 CobA_CobO_BtuR ATP:cor 93.5 0.22 4.8E-06 51.5 7.3 116 178-303 3-139 (159)
359 PRK00889 adenylylsulfate kinas 93.5 0.23 5E-06 53.4 8.0 27 177-203 4-30 (175)
360 PRK09280 F0F1 ATP synthase sub 93.5 0.4 8.6E-06 58.4 10.6 91 178-269 145-250 (463)
361 KOG0738 AAA+-type ATPase [Post 93.4 0.21 4.6E-06 57.3 7.6 34 177-217 245-278 (491)
362 PRK00409 recombination and DNA 93.4 0.13 2.8E-06 68.1 7.1 186 175-386 325-529 (782)
363 COG0194 Gmk Guanylate kinase [ 93.4 0.27 5.9E-06 51.2 7.8 24 178-201 5-28 (191)
364 KOG2170 ATPase of the AAA+ sup 93.4 0.21 4.5E-06 55.6 7.2 99 157-269 83-190 (344)
365 COG4608 AppF ABC-type oligopep 93.4 0.14 3.1E-06 56.8 6.1 122 177-307 39-175 (268)
366 cd02025 PanK Pantothenate kina 93.4 0.3 6.4E-06 54.4 8.8 41 179-219 1-41 (220)
367 PRK13765 ATP-dependent proteas 93.4 0.14 3E-06 65.6 7.0 81 152-236 27-107 (637)
368 PF00560 LRR_1: Leucine Rich R 93.4 0.041 8.9E-07 35.7 1.2 22 561-582 1-22 (22)
369 cd02019 NK Nucleoside/nucleoti 93.4 0.067 1.5E-06 47.0 2.9 23 179-201 1-23 (69)
370 PRK05342 clpX ATP-dependent pr 93.3 0.21 4.5E-06 60.9 8.1 45 157-201 72-132 (412)
371 PF13306 LRR_5: Leucine rich r 93.3 0.16 3.5E-06 51.3 6.2 105 551-661 3-111 (129)
372 PF00485 PRK: Phosphoribulokin 93.3 0.069 1.5E-06 58.5 3.7 25 179-203 1-25 (194)
373 cd01131 PilT Pilus retraction 93.3 0.07 1.5E-06 58.5 3.7 110 178-305 2-112 (198)
374 PRK06851 hypothetical protein; 93.3 0.87 1.9E-05 54.1 12.9 44 174-218 211-254 (367)
375 COG0003 ArsA Predicted ATPase 93.3 0.16 3.4E-06 59.2 6.6 49 177-227 2-50 (322)
376 PRK05439 pantothenate kinase; 93.3 0.45 9.7E-06 55.3 10.2 46 175-220 84-129 (311)
377 PRK05917 DNA polymerase III su 93.2 1.2 2.5E-05 51.2 13.3 39 164-202 5-44 (290)
378 cd03228 ABCC_MRP_Like The MRP 93.2 0.16 3.4E-06 54.3 6.1 34 177-213 28-61 (171)
379 KOG0726 26S proteasome regulat 93.2 0.35 7.6E-06 53.0 8.5 96 152-269 181-290 (440)
380 COG2607 Predicted ATPase (AAA+ 93.2 0.47 1E-05 51.1 9.2 49 155-203 59-111 (287)
381 PRK13948 shikimate kinase; Pro 93.1 0.34 7.3E-06 51.9 8.4 27 175-201 8-34 (182)
382 CHL00206 ycf2 Ycf2; Provisiona 93.1 0.55 1.2E-05 65.3 12.0 27 176-202 1629-1655(2281)
383 PRK14721 flhF flagellar biosyn 93.1 0.44 9.5E-06 57.8 10.2 87 177-266 191-278 (420)
384 cd01122 GP4d_helicase GP4d_hel 93.1 0.48 1E-05 55.2 10.4 50 178-230 31-80 (271)
385 cd03247 ABCC_cytochrome_bd The 93.0 0.2 4.3E-06 54.0 6.6 24 178-201 29-52 (178)
386 PRK08233 hypothetical protein; 93.0 0.082 1.8E-06 57.3 3.7 25 177-201 3-27 (182)
387 TIGR00390 hslU ATP-dependent p 93.0 0.26 5.5E-06 58.8 7.8 47 156-202 12-72 (441)
388 cd03283 ABC_MutS-like MutS-lik 93.0 0.19 4.2E-06 54.9 6.5 24 178-201 26-49 (199)
389 TIGR02655 circ_KaiC circadian 93.0 0.28 6.1E-06 61.9 8.9 87 177-268 263-364 (484)
390 PRK14723 flhF flagellar biosyn 92.9 0.57 1.2E-05 60.6 11.4 87 177-267 185-273 (767)
391 PF13671 AAA_33: AAA domain; P 92.9 0.086 1.9E-06 54.5 3.5 23 179-201 1-23 (143)
392 PTZ00301 uridine kinase; Provi 92.9 0.097 2.1E-06 57.4 4.0 26 177-202 3-28 (210)
393 TIGR01039 atpD ATP synthase, F 92.9 0.58 1.3E-05 56.8 10.7 91 178-269 144-249 (461)
394 PF13245 AAA_19: Part of AAA d 92.8 0.27 5.9E-06 44.0 6.0 26 176-201 9-34 (76)
395 PRK05973 replicative DNA helic 92.8 0.4 8.6E-06 53.4 8.5 46 178-227 65-110 (237)
396 TIGR03881 KaiC_arch_4 KaiC dom 92.7 0.71 1.5E-05 52.1 11.0 40 177-218 20-59 (229)
397 PRK05480 uridine/cytidine kina 92.7 0.1 2.2E-06 58.0 4.0 26 176-201 5-30 (209)
398 PF03205 MobB: Molybdopterin g 92.7 0.18 3.9E-06 51.4 5.5 39 178-217 1-39 (140)
399 PRK08972 fliI flagellum-specif 92.7 0.31 6.7E-06 58.8 8.2 89 177-269 162-264 (444)
400 cd01132 F1_ATPase_alpha F1 ATP 92.7 0.53 1.1E-05 53.2 9.5 93 178-275 70-180 (274)
401 PRK06762 hypothetical protein; 92.7 0.1 2.2E-06 55.6 3.8 25 177-201 2-26 (166)
402 PTZ00494 tuzin-like protein; P 92.6 2.9 6.3E-05 49.5 15.2 166 152-333 367-544 (664)
403 cd03223 ABCD_peroxisomal_ALDP 92.6 0.29 6.2E-06 52.0 7.1 121 178-317 28-160 (166)
404 PF00910 RNA_helicase: RNA hel 92.6 0.12 2.7E-06 50.0 4.0 24 180-203 1-24 (107)
405 COG4240 Predicted kinase [Gene 92.6 0.47 1E-05 50.4 8.2 82 175-257 48-133 (300)
406 COG0488 Uup ATPase components 92.5 2.1 4.6E-05 53.9 15.4 131 178-319 349-511 (530)
407 CHL00060 atpB ATP synthase CF1 92.5 0.48 1E-05 58.0 9.4 91 178-269 162-274 (494)
408 COG0529 CysC Adenylylsulfate k 92.5 0.41 8.9E-06 49.1 7.4 33 171-203 17-49 (197)
409 PF08433 KTI12: Chromatin asso 92.5 0.12 2.5E-06 59.2 4.0 26 178-203 2-27 (270)
410 PRK03839 putative kinase; Prov 92.4 0.11 2.3E-06 56.3 3.5 23 179-201 2-24 (180)
411 TIGR00764 lon_rel lon-related 92.4 0.24 5.3E-06 63.7 7.2 78 153-234 15-92 (608)
412 KOG1532 GTPase XAB1, interacts 92.4 0.15 3.2E-06 55.5 4.3 31 176-206 18-48 (366)
413 PRK06995 flhF flagellar biosyn 92.3 0.45 9.7E-06 58.7 9.1 87 178-267 257-344 (484)
414 PRK08149 ATP synthase SpaL; Va 92.3 0.35 7.6E-06 58.6 7.9 89 177-269 151-253 (428)
415 PRK13407 bchI magnesium chelat 92.3 0.17 3.7E-06 59.6 5.3 49 153-201 5-53 (334)
416 PRK08927 fliI flagellum-specif 92.3 0.59 1.3E-05 56.7 9.8 89 177-269 158-260 (442)
417 TIGR01040 V-ATPase_V1_B V-type 92.2 0.38 8.2E-06 58.2 8.0 92 178-269 142-259 (466)
418 COG0572 Udk Uridine kinase [Nu 92.2 0.13 2.9E-06 55.4 3.8 27 176-202 7-33 (218)
419 KOG2123 Uncharacterized conser 92.2 0.016 3.5E-07 62.8 -3.0 79 581-659 39-123 (388)
420 PF03029 ATP_bind_1: Conserved 92.2 0.058 1.3E-06 60.6 1.2 33 182-216 1-33 (238)
421 PF07726 AAA_3: ATPase family 92.2 0.09 2E-06 51.4 2.3 27 180-208 2-28 (131)
422 TIGR00235 udk uridine kinase. 92.2 0.13 2.8E-06 57.0 4.0 27 176-202 5-31 (207)
423 PRK00625 shikimate kinase; Pro 92.2 0.12 2.5E-06 55.0 3.3 23 179-201 2-24 (173)
424 TIGR01360 aden_kin_iso1 adenyl 92.1 0.13 2.8E-06 56.1 3.9 26 176-201 2-27 (188)
425 cd01134 V_A-ATPase_A V/A-type 92.1 0.45 9.8E-06 55.3 8.1 86 178-268 158-265 (369)
426 COG2274 SunT ABC-type bacterio 92.1 15 0.00033 48.2 22.9 26 177-202 499-524 (709)
427 TIGR01041 ATP_syn_B_arch ATP s 92.1 0.49 1.1E-05 58.0 8.9 92 178-269 142-250 (458)
428 PF07724 AAA_2: AAA domain (Cd 92.1 0.15 3.2E-06 54.1 4.0 43 177-220 3-45 (171)
429 TIGR01313 therm_gnt_kin carboh 92.0 0.28 6E-06 52.0 6.1 22 180-201 1-22 (163)
430 PTZ00185 ATPase alpha subunit; 92.0 0.7 1.5E-05 56.2 9.9 91 178-269 190-301 (574)
431 PRK11823 DNA repair protein Ra 92.0 0.34 7.3E-06 60.1 7.7 83 177-268 80-167 (446)
432 TIGR03575 selen_PSTK_euk L-ser 92.0 0.49 1.1E-05 55.7 8.5 37 180-217 2-38 (340)
433 TIGR00382 clpX endopeptidase C 92.0 0.44 9.5E-06 57.7 8.3 46 156-201 77-140 (413)
434 PRK06002 fliI flagellum-specif 92.0 0.39 8.5E-06 58.3 7.8 89 178-269 166-266 (450)
435 PRK13949 shikimate kinase; Pro 92.0 0.24 5.1E-06 52.6 5.4 25 178-202 2-26 (169)
436 PRK04040 adenylate kinase; Pro 92.0 0.14 3E-06 55.3 3.7 25 177-201 2-26 (188)
437 PTZ00088 adenylate kinase 1; P 91.9 0.24 5.1E-06 55.3 5.5 23 179-201 8-30 (229)
438 cd03246 ABCC_Protease_Secretio 91.9 0.51 1.1E-05 50.5 8.0 24 178-201 29-52 (173)
439 KOG3864 Uncharacterized conser 91.9 0.023 5E-07 59.2 -2.2 41 1446-1487 150-190 (221)
440 COG3854 SpoIIIAA ncharacterize 91.8 0.37 8.1E-06 51.3 6.4 122 166-304 126-255 (308)
441 TIGR00150 HI0065_YjeE ATPase, 91.8 0.28 6.1E-06 49.0 5.3 39 164-202 7-47 (133)
442 PF13306 LRR_5: Leucine rich r 91.8 0.34 7.3E-06 48.9 6.2 115 532-655 10-128 (129)
443 cd03222 ABC_RNaseL_inhibitor T 91.8 0.32 7E-06 51.9 6.2 25 177-201 25-49 (177)
444 TIGR00416 sms DNA repair prote 91.7 0.4 8.7E-06 59.4 7.8 83 177-268 94-181 (454)
445 TIGR03574 selen_PSTK L-seryl-t 91.7 0.44 9.6E-06 54.5 7.7 25 179-203 1-25 (249)
446 PF02374 ArsA_ATPase: Anion-tr 91.7 0.25 5.5E-06 57.8 5.7 46 178-225 2-47 (305)
447 KOG3864 Uncharacterized conser 91.6 0.048 1E-06 57.0 -0.3 65 1067-1139 102-166 (221)
448 PRK09435 membrane ATPase/prote 91.6 1.4 2.9E-05 52.0 11.6 39 166-204 43-83 (332)
449 PRK05201 hslU ATP-dependent pr 91.6 0.44 9.5E-06 56.9 7.5 47 156-202 15-75 (443)
450 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.6 0.31 6.7E-06 50.3 5.7 102 178-306 27-131 (144)
451 PRK15429 formate hydrogenlyase 91.6 0.31 6.7E-06 64.7 7.1 61 155-217 375-437 (686)
452 PRK00131 aroK shikimate kinase 91.5 0.16 3.5E-06 54.5 3.7 25 177-201 4-28 (175)
453 cd00984 DnaB_C DnaB helicase C 91.4 0.93 2E-05 51.7 10.0 49 178-229 14-62 (242)
454 cd03230 ABC_DR_subfamily_A Thi 91.4 0.5 1.1E-05 50.6 7.3 33 178-213 27-59 (173)
455 cd02029 PRK_like Phosphoribulo 91.4 2.7 5.9E-05 47.2 12.9 36 179-216 1-36 (277)
456 PRK10416 signal recognition pa 91.4 1.9 4.1E-05 50.8 12.6 28 176-203 113-140 (318)
457 cd02024 NRK1 Nicotinamide ribo 91.3 0.14 3.1E-06 54.8 2.9 23 179-201 1-23 (187)
458 KOG0473 Leucine-rich repeat pr 91.3 0.014 3.1E-07 61.4 -4.4 76 584-661 43-119 (326)
459 TIGR02030 BchI-ChlI magnesium 91.3 0.28 6E-06 58.0 5.5 47 155-201 3-49 (337)
460 cd00267 ABC_ATPase ABC (ATP-bi 91.2 0.27 5.8E-06 51.7 4.9 114 178-306 26-144 (157)
461 PRK03846 adenylylsulfate kinas 91.2 0.45 9.7E-06 52.3 6.8 29 174-202 21-49 (198)
462 COG1936 Predicted nucleotide k 91.2 0.15 3.3E-06 52.2 2.8 20 179-198 2-21 (180)
463 COG3598 RepA RecA-family ATPas 91.2 0.57 1.2E-05 52.6 7.4 59 179-237 91-158 (402)
464 PRK10463 hydrogenase nickel in 91.2 0.33 7E-06 55.4 5.7 36 167-202 94-129 (290)
465 PRK06936 type III secretion sy 91.2 0.69 1.5E-05 56.1 8.7 89 177-269 162-264 (439)
466 PRK11608 pspF phage shock prot 91.1 0.23 4.9E-06 59.1 4.7 45 156-200 6-52 (326)
467 PF12775 AAA_7: P-loop contain 91.0 0.19 4E-06 57.9 3.7 88 166-269 23-112 (272)
468 PRK04196 V-type ATP synthase s 91.0 0.67 1.5E-05 57.0 8.5 92 178-269 144-252 (460)
469 TIGR01287 nifH nitrogenase iro 90.9 0.3 6.6E-06 56.9 5.5 40 178-219 1-40 (275)
470 PRK07276 DNA polymerase III su 90.9 5.1 0.00011 46.2 15.1 136 162-330 8-172 (290)
471 COG0396 sufC Cysteine desulfur 90.9 0.55 1.2E-05 50.5 6.6 57 247-307 153-209 (251)
472 COG5635 Predicted NTPase (NACH 90.9 0.77 1.7E-05 62.1 9.9 176 178-368 223-427 (824)
473 smart00534 MUTSac ATPase domai 90.8 0.077 1.7E-06 57.5 0.4 22 179-200 1-22 (185)
474 TIGR03498 FliI_clade3 flagella 90.8 0.51 1.1E-05 57.3 7.3 88 178-269 141-242 (418)
475 cd02028 UMPK_like Uridine mono 90.8 0.24 5.1E-06 53.3 4.0 24 179-202 1-24 (179)
476 PRK06217 hypothetical protein; 90.8 0.2 4.3E-06 54.2 3.5 24 179-202 3-26 (183)
477 TIGR00708 cobA cob(I)alamin ad 90.8 0.68 1.5E-05 48.5 7.1 119 177-303 5-141 (173)
478 PF13479 AAA_24: AAA domain 90.7 0.65 1.4E-05 51.6 7.5 31 178-218 4-34 (213)
479 KOG1051 Chaperone HSP104 and r 90.7 1.5 3.2E-05 57.5 11.5 103 156-269 562-672 (898)
480 cd02020 CMPK Cytidine monophos 90.6 0.18 4E-06 52.3 3.0 23 179-201 1-23 (147)
481 PRK05800 cobU adenosylcobinami 90.6 0.5 1.1E-05 50.1 6.2 82 179-268 3-87 (170)
482 COG0563 Adk Adenylate kinase a 90.6 0.2 4.4E-06 53.3 3.3 24 179-202 2-25 (178)
483 PRK14529 adenylate kinase; Pro 90.6 0.68 1.5E-05 51.2 7.4 85 179-269 2-88 (223)
484 CHL00081 chlI Mg-protoporyphyr 90.6 0.31 6.7E-06 57.6 5.0 49 154-202 15-63 (350)
485 PF13504 LRR_7: Leucine rich r 90.6 0.16 3.5E-06 30.5 1.4 16 606-621 2-17 (17)
486 PRK10751 molybdopterin-guanine 90.5 0.28 6.2E-06 51.6 4.2 28 176-203 5-32 (173)
487 cd01136 ATPase_flagellum-secre 90.5 0.72 1.6E-05 54.0 7.9 89 177-269 69-171 (326)
488 cd03243 ABC_MutS_homologs The 90.5 0.13 2.7E-06 56.8 1.6 23 178-200 30-52 (202)
489 cd00227 CPT Chloramphenicol (C 90.4 0.22 4.7E-06 53.5 3.3 24 178-201 3-26 (175)
490 cd02023 UMPK Uridine monophosp 90.4 0.18 4E-06 55.4 2.8 23 179-201 1-23 (198)
491 CHL00059 atpA ATP synthase CF1 90.4 1.3 2.8E-05 54.2 10.0 88 178-269 142-245 (485)
492 PRK13947 shikimate kinase; Pro 90.4 0.21 4.7E-06 53.4 3.3 23 179-201 3-25 (171)
493 cd02021 GntK Gluconate kinase 90.3 0.19 4.2E-06 52.4 2.8 23 179-201 1-23 (150)
494 TIGR02655 circ_KaiC circadian 90.3 0.96 2.1E-05 57.1 9.4 87 176-266 20-129 (484)
495 TIGR02322 phosphon_PhnN phosph 90.2 0.23 5E-06 53.6 3.4 24 178-201 2-25 (179)
496 PRK00279 adk adenylate kinase; 90.2 1.2 2.6E-05 49.6 9.2 23 179-201 2-24 (215)
497 cd01878 HflX HflX subfamily. 90.2 0.65 1.4E-05 51.3 7.1 27 175-201 39-65 (204)
498 COG2019 AdkA Archaeal adenylat 90.2 0.28 6.1E-06 49.7 3.5 25 177-201 4-28 (189)
499 PRK09302 circadian clock prote 90.2 0.92 2E-05 58.0 9.2 85 178-266 32-139 (509)
500 TIGR01650 PD_CobS cobaltochela 90.2 0.94 2E-05 52.7 8.3 63 156-225 45-107 (327)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-79 Score=782.28 Aligned_cols=625 Identities=29% Similarity=0.461 Sum_probs=491.3
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHh-----CC---
Q 000280 22 PIRREISYVFNYQSNVEELRTLDKELAYKREMVEQPVIQARRQGDEIYKRVEDWLNNVDDFTEDVVKSIT-----GG--- 93 (1728)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~~v~~wl~~v~~~~~dv~~~~~-----~~--- 93 (1728)
.+.+++..+.++++++..+++++..|+.. +++|++..+ ....+..|.+.++++.|+ +++.. ..
T Consensus 15 ~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~-------l~d~~a~~~-~~~~~~~~~e~~~~~~~~-~e~~~~~~~v~~~~~ 85 (889)
T KOG4658|consen 15 LLNRESECLDGKDNYILELKENLKALQSA-------LEDLDAKRD-DLERRVNWEEDVGDLVYL-AEDIIWLFLVEEIER 85 (889)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHH-------HHHHHhhcc-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34667777777666666666655555554 455554433 256788899999888777 32221 00
Q ss_pred ----cc-----ccccccccCCCc-chHHHhHHHHHHHHHHHHHHHhhcCCCCCccccC-CCCCCccCcccCccccccchH
Q 000280 94 ----ED-----EAKKRCFKGLCP-NLIKRYSLGKKAVKAAKEGADLLGTGNFGTVSFR-PTVERTTPVSYTAYEQFDSRM 162 (1728)
Q Consensus 94 ----~~-----~~~~~~~~~~~~-~~~~r~~~~~~i~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gR~ 162 (1728)
.. ....-|+.+++. ++..-+.+++++.++.+.++.+..++.|+.++.. .+.......+...... +|.+
T Consensus 86 ~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e 164 (889)
T KOG4658|consen 86 KANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLE 164 (889)
T ss_pred HHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHH
Confidence 00 011123333333 4566678889999999999999888777766532 2111122222222333 9999
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHH-hccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhcc--C
Q 000280 163 KIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVI-EDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ--N 239 (1728)
Q Consensus 163 ~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~ 239 (1728)
..++++.+.|.+++..+++|+||||+||||||++++++.. ++.+||.++||.||+.++..+++.+|+..++..... .
T Consensus 165 ~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~ 244 (889)
T KOG4658|consen 165 TMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWED 244 (889)
T ss_pred HHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccch
Confidence 9999999999987779999999999999999999999998 899999999999999999999999999999874432 2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCcccccccCCCCCCeEEEEEeCCchhhcccCCCccEEEccC
Q 000280 240 ENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFFLIEV 319 (1728)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~~~~~~~~~~l~~ 319 (1728)
....+.+..+.+.|. ++||+|||||||+..+|+.++.|+|. ...||||++|||++.|+...|++...++++.
T Consensus 245 ~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~-------~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~ 316 (889)
T KOG4658|consen 245 KEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPS-------RENGSKVVLTTRSEEVCGRAMGVDYPIEVEC 316 (889)
T ss_pred hhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCC-------ccCCeEEEEEeccHhhhhccccCCccccccc
Confidence 234677888889987 89999999999999999999999998 7889999999999999996689999999999
Q ss_pred CCHHHHHHHHHHHhCCC--CCCCchHHHHHHHHHHhCCChHHHHHHHHHHhcCCchh-HHHHHHHHhcccccccccchhh
Q 000280 320 LSYEEAWCLFEKIVGDS--AKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYV-WNDSLERLRNSTSRQIHGMEEN 396 (1728)
Q Consensus 320 L~~~ea~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~glPLai~~~a~~L~~~~~~~-w~~~~~~l~~~~~~~~~~~~~~ 396 (1728)
|+++|||.||.+.+|+. ..++.++++|++|+++|+|+|||+.++|+.|+.|...+ |+++.+.+.+....+.+++.+.
T Consensus 317 L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 317 LTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred cCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 99999999999999754 33455899999999999999999999999999998775 9999999988755556677888
Q ss_pred HHHHHHHhHhcCCchhHHHHHHhhcccCCCCCcCHHHHHHHHHhcCcccCcccHHHHHHHHHHHHHHHHhccccccCCC-
Q 000280 397 VYSSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAARNRVYTLVDNLKASSLLLDGDK- 475 (1728)
Q Consensus 397 ~~~~l~lsy~~L~~~~~k~~fl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~- 475 (1728)
++.++++||+.||++ +|.||+|||+||+|+.|+++.|+.+|+|+||+++....+.+++.+++|+++|++++|++....
T Consensus 397 i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~ 475 (889)
T KOG4658|consen 397 ILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE 475 (889)
T ss_pred hHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc
Confidence 999999999999954 999999999999999999999999999999998866677788999999999999999987652
Q ss_pred ---CcEEEcHHHHHHHHHHhc-----ccCeEEeccCCccccccc----CceEEEEcCCCCCCCCCCCCCCCCeEEEEEec
Q 000280 476 ---DEVKLHDIIYAVAVSIAR-----DEFMFNIQSKDELKDKTQ----KDSIAISLPNRDIDELPERLECPKLSLFLLFA 543 (1728)
Q Consensus 476 ---~~~~mHdlv~~~a~~~~~-----~~~~~~~~~~~~~~~~~~----~~~~~lsl~~~~~~~l~~~~~~~~Lr~L~l~~ 543 (1728)
.+|+|||+||++|.++|+ +++.+ +..+....+.|. ..+|+++++++.+..++....+++|++|.+..
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~~i-v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~ 554 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFGKQEENQI-VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQR 554 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhccccccccceE-EECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEee
Confidence 899999999999999999 56543 332211111111 35699999999999999999999999999999
Q ss_pred cCCCCCcCChhHhcCCCcceEEEecCc-CccccCccccCCCcccEEEecCccCCCccccccccCCceeecCCCCCCccch
Q 000280 544 KYDSSLKIPDLFFEGMNELRVVHFTRT-CFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPR 622 (1728)
Q Consensus 544 ~~~~~~~i~~~~f~~l~~Lr~L~Ls~~-~i~~lp~~i~~L~~Lr~L~L~~~~i~~~~~i~~L~~L~~L~Ls~~~i~~LP~ 622 (1728)
|......++..||..|+.||||||++| .+.+||++|++|. |||||+|+++.++.||.
T Consensus 555 n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li----------------------~LryL~L~~t~I~~LP~ 612 (889)
T KOG4658|consen 555 NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV----------------------HLRYLDLSDTGISHLPS 612 (889)
T ss_pred cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh----------------------hhhcccccCCCccccch
Confidence 832377889999999999999999975 3456666655554 55555555667788888
Q ss_pred HhhccccccEEeccCcccccccCccccccCcccceeccCCCccccccccCCCccchhhhcCCCCCCeEEEEec
Q 000280 623 EIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIR 695 (1728)
Q Consensus 623 ~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 695 (1728)
++++|++|++||+..+..+..+ ++++..|.+||+|.+..... ..+.....++.+|.+|+.|.+...
T Consensus 613 ~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~------~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSAL------SNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred HHHHHHhhheeccccccccccc-cchhhhcccccEEEeecccc------ccchhhHHhhhcccchhhheeecc
Confidence 8888888888888887666655 44366688888888876542 223555677777777777776543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.1e-59 Score=635.61 Aligned_cols=661 Identities=21% Similarity=0.305 Sum_probs=418.6
Q ss_pred ccccccchHHHHHHHHHHHh--cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEE---CCCC---------
Q 000280 154 AYEQFDSRMKIFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEV---TQTP--------- 219 (1728)
Q Consensus 154 ~~~~~~gR~~~~~~l~~~L~--~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~~--------- 219 (1728)
+..+++||++.++++.++|. ..++++|+|+||||+||||||+++|++.. ..|++.+|+.. +...
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence 45679999999999998886 45789999999999999999999999874 57998888742 1110
Q ss_pred --C-HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCcccccccCCCCCCeEEE
Q 000280 220 --D-LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVL 296 (1728)
Q Consensus 220 --~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~g~~il 296 (1728)
+ ...++.+++.++........ .....++++++ ++|+||||||||+..+|+.+.....+ .+.|++||
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~---~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~-------~~~GsrII 328 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKI---YHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQW-------FGSGSRII 328 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCccc---CCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCcc-------CCCCcEEE
Confidence 1 12334444444322111000 01245677776 79999999999999999988765554 67899999
Q ss_pred EEeCCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCC-CCCCchHHHHHHHHHHhCCChHHHHHHHHHHhcCCchhH
Q 000280 297 LTSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDS-AKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVW 375 (1728)
Q Consensus 297 vTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~i~~~c~glPLai~~~a~~L~~~~~~~w 375 (1728)
||||++.++. .++..++|+++.++++|||+||.++|+.. ....++.+++++|+++|+|+||||+++|++|+.++..+|
T Consensus 329 iTTrd~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W 407 (1153)
T PLN03210 329 VITKDKHFLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDW 407 (1153)
T ss_pred EEeCcHHHHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHH
Confidence 9999999987 46778899999999999999999999643 344567899999999999999999999999999987779
Q ss_pred HHHHHHHhcccccccccchhhHHHHHHHhHhcCCchhHHHHHHhhcccCCCCCcCHHHHHHHHHhcCcccCcccHHHHHH
Q 000280 376 NDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAARN 455 (1728)
Q Consensus 376 ~~~~~~l~~~~~~~~~~~~~~~~~~l~lsy~~L~~~~~k~~fl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~ 455 (1728)
++++++++... +..+..+|++||+.|+++..|.||+++|.|+++..+ +.+..|++.+.+..
T Consensus 408 ~~~l~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~--------- 468 (1153)
T PLN03210 408 MDMLPRLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV--------- 468 (1153)
T ss_pred HHHHHHHHhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc---------
Confidence 99999987633 346999999999999875469999999999987665 34666777664431
Q ss_pred HHHHHHHHHHhccccccCCCCcEEEcHHHHHHHHHHhcccCeEEeccCCcccccc-------------cCceEEEEcCCC
Q 000280 456 RVYTLVDNLKASSLLLDGDKDEVKLHDIIYAVAVSIARDEFMFNIQSKDELKDKT-------------QKDSIAISLPNR 522 (1728)
Q Consensus 456 ~~~~~l~~L~~~~ll~~~~~~~~~mHdlv~~~a~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~lsl~~~ 522 (1728)
...++.|++++|++... ++++|||++|++|++++.++.- ..+.+..-|. ...+++|++..+
T Consensus 469 --~~~l~~L~~ksLi~~~~-~~~~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 469 --NIGLKNLVDKSLIHVRE-DIVEMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred --hhChHHHHhcCCEEEcC-CeEEhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence 11388899999997653 6799999999999999977531 1011111111 123344444433
Q ss_pred CCCCCCCCCCCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCc------c-ccCccccCCC-cccEEEecCcc
Q 000280 523 DIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCF------L-SLPSSLVCLI-SLRTLSLEGCQ 594 (1728)
Q Consensus 523 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i------~-~lp~~i~~L~-~Lr~L~L~~~~ 594 (1728)
.+. ...+....|.+|++|+.|.+..+.. . .+|..|..+. +||+|++.++.
T Consensus 543 ~~~----------------------~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~ 600 (1153)
T PLN03210 543 EID----------------------ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP 600 (1153)
T ss_pred ccc----------------------eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC
Confidence 222 1234445566666666666654421 1 3555555543 46667766666
Q ss_pred CCCccccccccCCceeecCCCCCCccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCccccccccCCC
Q 000280 595 VGDVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGS 674 (1728)
Q Consensus 595 i~~~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 674 (1728)
++.++....+.+|++|+++++.+..+|.++..+++|+.|++++|..++.+|. ++.+++|++|++++|...
T Consensus 601 l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L-------- 670 (1153)
T PLN03210 601 LRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL-------- 670 (1153)
T ss_pred CCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc--------
Confidence 6543222245667777777766666666666677777777766655666654 566667777776665432
Q ss_pred ccchhhhcCCCCCCeEEEEec-ccccCchhhhccccceeEEEEeccccccccccccceEeeccccchhhhhhhHHHhhcc
Q 000280 675 NASLVELKGLSKLTTLEIHIR-DARIMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKR 753 (1728)
Q Consensus 675 ~~~~~~L~~L~~L~~L~l~~~-~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~ 753 (1728)
...+..++++++|+.|+++.+ .+..+|..+.+ ++
T Consensus 671 ~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l---------------------------------------------~s 705 (1153)
T PLN03210 671 VELPSSIQYLNKLEDLDMSRCENLEILPTGINL---------------------------------------------KS 705 (1153)
T ss_pred cccchhhhccCCCCEEeCCCCCCcCccCCcCCC---------------------------------------------CC
Confidence 234455666666666666543 22333322211 12
Q ss_pred ccceEecccCCccccccccCcccccccCcEEeeeeccceeeeccccCcccccCCCccceeecccccccccccccC---CC
Q 000280 754 TEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNR---LH 830 (1728)
Q Consensus 754 L~~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~---~~ 830 (1728)
|+.|.+.+|...... +. ...+|+.|++.++. +..+|.. ..+++|.+|.+.++....-+.... ..
T Consensus 706 L~~L~Lsgc~~L~~~-p~-----~~~nL~~L~L~~n~-i~~lP~~------~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 706 LYRLNLSGCSRLKSF-PD-----ISTNISWLDLDETA-IEEFPSN------LRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred CCEEeCCCCCCcccc-cc-----ccCCcCeeecCCCc-ccccccc------ccccccccccccccchhhccccccccchh
Confidence 233333333221111 11 23467777776543 4455542 246777777776643211110000 00
Q ss_pred CCccCCCccEEEEeccCCccCCCCHHHHhhccCcceEEeccccccchhcccccccceecccccCcccCCCCCCceecccc
Q 000280 831 EDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSL 910 (1728)
Q Consensus 831 ~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 910 (1728)
....+++|+.|.+++|+.+..+|. .++++++|+.|++++|..++.++ ... .+++|
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP----------------------~~~-~L~sL 827 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLP----------------------TGI-NLESL 827 (1153)
T ss_pred hhhccccchheeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeC----------------------CCC-Ccccc
Confidence 112235677777777666666662 45666666666666666655544 111 25566
Q ss_pred ceecccccccccccCCCCccCCCCccCccEEEeccccccccccchHHHHhhcccceeEeecccccccc
Q 000280 911 EELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEGV 978 (1728)
Q Consensus 911 ~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~i 978 (1728)
+.|++++|..+..+ + ...++|+.|++++ +.++.++. .+..+++|+.|++++|++++.+
T Consensus 828 ~~L~Ls~c~~L~~~-p------~~~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 828 ESLDLSGCSRLRTF-P------DISTNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CEEECCCCCccccc-c------ccccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCcc
Confidence 66666666554422 1 1224566666655 44544322 3445555555555555555443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.2e-39 Score=377.63 Aligned_cols=276 Identities=32% Similarity=0.543 Sum_probs=224.4
Q ss_pred hHHHHHHHHHHHhc--CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhc-
Q 000280 161 RMKIFQNIMEVLKD--TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFK- 237 (1728)
Q Consensus 161 R~~~~~~l~~~L~~--~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 237 (1728)
|+.++++|.++|.+ ++.++|+|+||||+||||||++++++...+++|+.++|++++...+..+++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999997 789999999999999999999999997778999999999999999999999999999988743
Q ss_pred --cCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCcccccccCCCCCCeEEEEEeCCchhhcccCCCccEE
Q 000280 238 --QNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFF 315 (1728)
Q Consensus 238 --~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~~~~~~~~~ 315 (1728)
...+..+....+.+.+. ++++||||||||+...|+.+..+++. ...|++||||||+..++.........+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~-------~~~~~kilvTTR~~~v~~~~~~~~~~~ 152 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPS-------FSSGSKILVTTRDRSVAGSLGGTDKVI 152 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HC-------HHSS-EEEEEESCGGGGTTHHSCEEEE
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccc-------ccccccccccccccccccccccccccc
Confidence 24567778888999887 67999999999999999998887776 677999999999999887322237899
Q ss_pred EccCCCHHHHHHHHHHHhCCCC--CCCchHHHHHHHHHHhCCChHHHHHHHHHHhcCC-chhHHHHHHHHhccccccccc
Q 000280 316 LIEVLSYEEAWCLFEKIVGDSA--KASDFRVIADEIVRRCGGLPVAIKTIANALKNKR-LYVWNDSLERLRNSTSRQIHG 392 (1728)
Q Consensus 316 ~l~~L~~~ea~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~glPLai~~~a~~L~~~~-~~~w~~~~~~l~~~~~~~~~~ 392 (1728)
++++|+++||++||.+.++... ..+..++.+++|+++|+|+||||+++|++|+.+. ..+|+.+++++...... ..+
T Consensus 153 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~ 231 (287)
T PF00931_consen 153 ELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRD 231 (287)
T ss_dssp ECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 9999999999999999997433 4456678899999999999999999999996654 34499999988766532 222
Q ss_pred chhhHHHHHHHhHhcCCchhHHHHHHhhcccCCCCCcCHHHHHHHHHhcCcccC
Q 000280 393 MEENVYSSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSN 446 (1728)
Q Consensus 393 ~~~~~~~~l~lsy~~L~~~~~k~~fl~~a~fp~~~~i~~~~li~~w~~~g~~~~ 446 (1728)
....++.++.+||+.||++ +|+||+|||+||+++.|+++.++++|+++|+++.
T Consensus 232 ~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 232 YDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp SCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 4567999999999999997 7999999999999999999999999999999875
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=3.4e-30 Score=356.44 Aligned_cols=174 Identities=21% Similarity=0.350 Sum_probs=129.8
Q ss_pred ceEEEEcCCCCCCCC-CC-CCCCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCcc-ccCccccCCCcccEEE
Q 000280 513 DSIAISLPNRDIDEL-PE-RLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFL-SLPSSLVCLISLRTLS 589 (1728)
Q Consensus 513 ~~~~lsl~~~~~~~l-~~-~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~Lr~L~ 589 (1728)
.++.+.+.++.+... +. ...+++|+.|.+++| .-...+|..+|..+++||+|+|++|.+. .+|. +.+.+|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 577888887776543 22 235788888888877 3344788888878888888888888876 4553 4678888888
Q ss_pred ecCccCC--CccccccccCCceeecCCCCCC-ccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCccc
Q 000280 590 LEGCQVG--DVAIVGQLKKLEILSFRNSDIQ-QLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQ 666 (1728)
Q Consensus 590 L~~~~i~--~~~~i~~L~~L~~L~Ls~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 666 (1728)
|++|.+. .|..++++.+|++|+|++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence 8888876 2577888888888888888765 67888888888888888888544456665 888888888888887763
Q ss_pred cccccCCCccchhhhcCCCCCCeEEEEecccc
Q 000280 667 WEKVEGGSNASLVELKGLSKLTTLEIHIRDAR 698 (1728)
Q Consensus 667 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 698 (1728)
...+..++++++|+.|+++.|.+.
T Consensus 226 --------~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 226 --------GEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred --------CcCChhHhcCCCCCEEECcCceec
Confidence 455667888888888888776543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=7.4e-30 Score=353.04 Aligned_cols=170 Identities=18% Similarity=0.242 Sum_probs=137.0
Q ss_pred CCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCcc-ccCcccc-CCCcccEEEecCccCCCccccccccCCceee
Q 000280 534 PKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFL-SLPSSLV-CLISLRTLSLEGCQVGDVAIVGQLKKLEILS 611 (1728)
Q Consensus 534 ~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~-~lp~~i~-~L~~Lr~L~L~~~~i~~~~~i~~L~~L~~L~ 611 (1728)
.+++.|.++++ .........|..+++|++|+|++|.+. .+|..+. .+.+||+|+|++|.+......+.+.+|++|+
T Consensus 69 ~~v~~L~L~~~--~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGK--NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCC--CccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEE
Confidence 47899999887 333333455789999999999999987 7887754 8999999999999987543347799999999
Q ss_pred cCCCCCC-ccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCccccccccCCCccchhhhcCCCCCCeE
Q 000280 612 FRNSDIQ-QLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTL 690 (1728)
Q Consensus 612 Ls~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 690 (1728)
|++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+. ...+..++++++|+.|
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~--------~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLV--------GQIPRELGQMKSLKWI 217 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCc--------CcCChHHcCcCCccEE
Confidence 9999887 78999999999999999999544567766 899999999999998773 5567889999999999
Q ss_pred EEEecccc-cCchhh-hccccceeEE
Q 000280 691 EIHIRDAR-IMPQDL-ISMKLEIFRM 714 (1728)
Q Consensus 691 ~l~~~~~~-~~~~~~-~~~~L~~l~~ 714 (1728)
+++.|.+. .+|..+ .+.+|+.|++
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEEC
Confidence 99988766 455554 4455555544
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=4.4e-20 Score=254.10 Aligned_cols=344 Identities=18% Similarity=0.273 Sum_probs=222.3
Q ss_pred CCCCeEEEEEeccC-----CCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEecCccCCC-cccccccc
Q 000280 532 ECPKLSLFLLFAKY-----DSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD-VAIVGQLK 605 (1728)
Q Consensus 532 ~~~~Lr~L~l~~~~-----~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~-~~~i~~L~ 605 (1728)
.+++|+.|.+..+. .....+|+.+..-...||+|.+.++.+..+|..| .+.+|+.|++++|.+.. +..+..+.
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 35666666665431 1123455554333456777777777777777766 45677777777777664 35667777
Q ss_pred CCceeecCCC-CCCccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCccccccccCCCccchhhhcCC
Q 000280 606 KLEILSFRNS-DIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGL 684 (1728)
Q Consensus 606 ~L~~L~Ls~~-~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 684 (1728)
+|++|+|+++ .+..+|. ++.+++|++|++++|..+..+|.. +++|++|++|++++|... ...+..+ ++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L--------~~Lp~~i-~l 703 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENL--------EILPTGI-NL 703 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCc--------CccCCcC-CC
Confidence 7777777765 4566663 667777777777777667777766 777777777777765432 1122222 56
Q ss_pred CCCCeEEEEeccc-ccCchhhhccccceeEEEEeccccccccccccceEeeccccchhhhhhhHHHhhccccceEecccC
Q 000280 685 SKLTTLEIHIRDA-RIMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLK 763 (1728)
Q Consensus 685 ~~L~~L~l~~~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 763 (1728)
++|+.|+++++.. ..+|.. +.+++.|.+.+..
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~-----------------------------------------------~~nL~~L~L~~n~ 736 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI-----------------------------------------------STNISWLDLDETA 736 (1153)
T ss_pred CCCCEEeCCCCCCccccccc-----------------------------------------------cCCcCeeecCCCc
Confidence 6777777665421 111110 1122333333221
Q ss_pred CccccccccCcccccccCcEEeeeeccceeeeccccC---cccccCCCccceeecccccccccccccCCCCCccCCCccE
Q 000280 764 GFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIG---QVCCKVFPLLESLSLCRLFNLEKICHNRLHEDESFSNLRI 840 (1728)
Q Consensus 764 ~~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~---~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~~~~~~~L~~ 840 (1728)
. .. +|. ...+++|+.|.+.++.... +..... ......+++|+.|++++++.+..++. ..+.+++|+.
T Consensus 737 i-~~-lP~---~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~----si~~L~~L~~ 806 (1153)
T PLN03210 737 I-EE-FPS---NLRLENLDELILCEMKSEK-LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS----SIQNLHKLEH 806 (1153)
T ss_pred c-cc-ccc---cccccccccccccccchhh-ccccccccchhhhhccccchheeCCCCCCccccCh----hhhCCCCCCE
Confidence 1 11 111 1145667767665533211 111000 00023457999999999988888765 4678999999
Q ss_pred EEEeccCCccCCCCHHHHhhccCcceEEeccccccchhcccccccceecccccCcccCCCCCCceeccccceeccccccc
Q 000280 841 IKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSLEELDLYSLIT 920 (1728)
Q Consensus 841 L~L~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 920 (1728)
|++++|++++.+|.. .++++|+.|++++|..+..++. ..++|+.|+|+++ .
T Consensus 807 L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~-------------------------~~~nL~~L~Ls~n-~ 857 (1153)
T PLN03210 807 LEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPD-------------------------ISTNISDLNLSRT-G 857 (1153)
T ss_pred EECCCCCCcCeeCCC---CCccccCEEECCCCCccccccc-------------------------cccccCEeECCCC-C
Confidence 999999999999853 2689999999999988766541 1468999999997 6
Q ss_pred ccccCCCCccCCCCccCccEEEeccccccccccchHHHHhhcccceeEeeccccccccc
Q 000280 921 IEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEGVV 979 (1728)
Q Consensus 921 l~~~~~~~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~ 979 (1728)
++.+ +.+ +..+++|+.|++.+|++++.++. ....+++|+.+++++|.+++.+.
T Consensus 858 i~~i-P~s---i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 858 IEEV-PWW---IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CccC-hHH---HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCccccccc
Confidence 7644 222 36899999999999999998655 35678999999999999887553
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=4.1e-20 Score=210.80 Aligned_cols=346 Identities=17% Similarity=0.171 Sum_probs=240.7
Q ss_pred CCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEecCccCCCc--cccccccCCcee
Q 000280 533 CPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDV--AIVGQLKKLEIL 610 (1728)
Q Consensus 533 ~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~~--~~i~~L~~L~~L 610 (1728)
.+..++|.+++| ....+.-.+|.++.+|+.+.+..|.++.+|.......||..|+|.+|.|..+ +.+..+..||.|
T Consensus 77 p~~t~~LdlsnN--kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 77 PSQTQTLDLSNN--KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ccceeeeecccc--ccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 456778888887 6777777888999999999999999999998777778899999999998875 678888899999
Q ss_pred ecCCCCCCccch-HhhccccccEEeccCcccccccCccccccCcccceeccCCCccccccccCCCccchhhhcCCCCCCe
Q 000280 611 SFRNSDIQQLPR-EIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTT 689 (1728)
Q Consensus 611 ~Ls~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 689 (1728)
|||.|.|.++|. ++..=.++.+|+|++| .++.+..+.+..|.+|-+|.++.|.+. .-.+..+++|++|+.
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrit--------tLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRIT--------TLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCccc--------ccCHHHhhhcchhhh
Confidence 999998888875 4566678999999998 788888877888999999999888874 556677888999999
Q ss_pred EEEEecccccCchhh--hccccceeEEEEeccccccccccccceEeeccccchhhhhhhHHHhhccccceEecccCCccc
Q 000280 690 LEIHIRDARIMPQDL--ISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQN 767 (1728)
Q Consensus 690 L~l~~~~~~~~~~~~--~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 767 (1728)
|++..|.+....-.. .+..|+.+ .+...+..+-
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nl---------------------------------------------klqrN~I~kL 260 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNL---------------------------------------------KLQRNDISKL 260 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhh---------------------------------------------hhhhcCcccc
Confidence 988877654321110 12222222 1111110000
Q ss_pred cccccCcccccccCcEEeeeeccceeeeccccCcccccCCCccceeecccccccccccccCCCCCccCCCccEEEEeccC
Q 000280 768 VVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNRLHEDESFSNLRIIKVGECD 847 (1728)
Q Consensus 768 ~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~~~~~~~L~~L~L~~c~ 847 (1728)
.-.. +.++.++++|++..+. +..+.... ...+.+|+.|+++.. .+..|... .-...++|++|+++. +
T Consensus 261 ~DG~---Fy~l~kme~l~L~~N~-l~~vn~g~----lfgLt~L~~L~lS~N-aI~rih~d---~WsftqkL~~LdLs~-N 327 (873)
T KOG4194|consen 261 DDGA---FYGLEKMEHLNLETNR-LQAVNEGW----LFGLTSLEQLDLSYN-AIQRIHID---SWSFTQKLKELDLSS-N 327 (873)
T ss_pred cCcc---eeeecccceeecccch-hhhhhccc----ccccchhhhhccchh-hhheeecc---hhhhcccceeEeccc-c
Confidence 0001 2256677777776432 33322211 445667777777762 33333211 223457888888887 4
Q ss_pred CccCCCCHHHHhhccCcceEEeccccccchhcccccccceecccccCcccCCCCCCceeccccceecccccccccccCCC
Q 000280 848 KLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSLEELDLYSLITIEKLWPK 927 (1728)
Q Consensus 848 ~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~ 927 (1728)
.+..+++ ..+..+..|++|.++.+ .+..+. ...+..+.+|++|+|+++ .+.....+
T Consensus 328 ~i~~l~~-~sf~~L~~Le~LnLs~N-si~~l~---------------------e~af~~lssL~~LdLr~N-~ls~~IED 383 (873)
T KOG4194|consen 328 RITRLDE-GSFRVLSQLEELNLSHN-SIDHLA---------------------EGAFVGLSSLHKLDLRSN-ELSWCIED 383 (873)
T ss_pred ccccCCh-hHHHHHHHhhhhccccc-chHHHH---------------------hhHHHHhhhhhhhcCcCC-eEEEEEec
Confidence 6777765 46678888999998873 344433 134555889999999988 66655554
Q ss_pred CccCCCCccCccEEEeccccccccccchHHHHhhcccceeEeeccc
Q 000280 928 QFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCW 973 (1728)
Q Consensus 928 ~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~ 973 (1728)
.-.....+++|++|.+.+ ++++.+ +...+..++.|++|++.+..
T Consensus 384 aa~~f~gl~~LrkL~l~g-Nqlk~I-~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTG-NQLKSI-PKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred chhhhccchhhhheeecC-ceeeec-chhhhccCcccceecCCCCc
Confidence 444456799999999999 889884 45677889999999998744
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=1.7e-22 Score=220.58 Aligned_cols=185 Identities=24% Similarity=0.350 Sum_probs=139.3
Q ss_pred CcccccccCceEEEEcCCCCCCCCCCC-CCCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCC
Q 000280 504 DELKDKTQKDSIAISLPNRDIDELPER-LECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCL 582 (1728)
Q Consensus 504 ~~~~~~~~~~~~~lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L 582 (1728)
.....|-+.+...+-+.+|++..+.+. ..+.-+.+|.++.| .....|..+ +.+..+..|+.++|.+..+|+.++.+
T Consensus 37 e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n--~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~ 113 (565)
T KOG0472|consen 37 EGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDN--KLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSL 113 (565)
T ss_pred chhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccc--hhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhh
Confidence 344556666666677777777766433 35667777777776 566677765 66777888888888888888888888
Q ss_pred CcccEEEecCccCCC-ccccccccCCceeecCCCCCCccchHhhccccccEEeccCcccccccCccccccCcccceeccC
Q 000280 583 ISLRTLSLEGCQVGD-VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMG 661 (1728)
Q Consensus 583 ~~Lr~L~L~~~~i~~-~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~ 661 (1728)
..|+.|+.++|.+.. +++|+.+..|..|+..+|++.++|.+++.+.+|..|++.+| +++.+|++.+ +++.|++|+..
T Consensus 114 ~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i-~m~~L~~ld~~ 191 (565)
T KOG0472|consen 114 ISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHI-AMKRLKHLDCN 191 (565)
T ss_pred hhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHH-HHHHHHhcccc
Confidence 888888888888664 68888888888888888888888888888888888888888 6888888744 48888888876
Q ss_pred CCccccccccCCCccchhhhcCCCCCCeEEEEecccccCch
Q 000280 662 DSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQ 702 (1728)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~ 702 (1728)
.|.. +..+.+++.|.+|..|+++.|.+..+|+
T Consensus 192 ~N~L---------~tlP~~lg~l~~L~~LyL~~Nki~~lPe 223 (565)
T KOG0472|consen 192 SNLL---------ETLPPELGGLESLELLYLRRNKIRFLPE 223 (565)
T ss_pred hhhh---------hcCChhhcchhhhHHHHhhhcccccCCC
Confidence 6655 4567788888888888888777776663
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=6.7e-21 Score=217.49 Aligned_cols=338 Identities=21% Similarity=0.326 Sum_probs=178.4
Q ss_pred EEEEcCCCCCCCCCCCC-CCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCcc--ccCccccCCCcccEEEec
Q 000280 515 IAISLPNRDIDELPERL-ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFL--SLPSSLVCLISLRTLSLE 591 (1728)
Q Consensus 515 ~~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~--~lp~~i~~L~~Lr~L~L~ 591 (1728)
+.+.+....+..+|+.+ .+.+|..|.+..| ...++.... +.++.||.+++..|++. .+|..|-.|..|.+|||+
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN--~L~~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHN--QLISVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS 111 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhh--hhHhhhhhh-ccchhhHHHhhhccccccCCCCchhcccccceeeecc
Confidence 44555554555555443 3455555555554 333343332 44555555555555553 355555555555555555
Q ss_pred CccCCC-ccccccccCCceeecCCCCCCccchH-hhccccccEEeccCcccccccCccccccCcccceeccCCCcccccc
Q 000280 592 GCQVGD-VAIVGQLKKLEILSFRNSDIQQLPRE-IGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEK 669 (1728)
Q Consensus 592 ~~~i~~-~~~i~~L~~L~~L~Ls~~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 669 (1728)
+|++.. |..+..-+++-+|+||+|+|..+|.+ +-+|+.|-+||||+| .+..+|+. +.+|.+|++|.+++|.+.
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~--- 186 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLN--- 186 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhh---
Confidence 555553 45555555555555555555555544 245555555555555 45555555 555555555555555442
Q ss_pred ccCCCccchhhhcCCCCCCeEEEEecccccCchhhhccccceeEEEEeccccccccccccceEeeccccchhhhhhhHHH
Q 000280 670 VEGGSNASLVELKGLSKLTTLEIHIRDARIMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKM 749 (1728)
Q Consensus 670 ~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~ 749 (1728)
...+..|-.|+.|+.|.++..+-+
T Consensus 187 -----hfQLrQLPsmtsL~vLhms~TqRT--------------------------------------------------- 210 (1255)
T KOG0444|consen 187 -----HFQLRQLPSMTSLSVLHMSNTQRT--------------------------------------------------- 210 (1255)
T ss_pred -----HHHHhcCccchhhhhhhcccccch---------------------------------------------------
Confidence 223333333334444444322210
Q ss_pred hhccccceEecccCCccccccccCcccccccCcEEeeeeccceeeeccccCcccccCCCccceeecccccccccccccCC
Q 000280 750 FLKRTEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNRL 829 (1728)
Q Consensus 750 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~ 829 (1728)
..++.+++. .+.||..++++. +.+..+|.. .-.+++|+.|+|++. +++++.-
T Consensus 211 ---------------l~N~Ptsld---~l~NL~dvDlS~-N~Lp~vPec-----ly~l~~LrrLNLS~N-~iteL~~--- 262 (1255)
T KOG0444|consen 211 ---------------LDNIPTSLD---DLHNLRDVDLSE-NNLPIVPEC-----LYKLRNLRRLNLSGN-KITELNM--- 262 (1255)
T ss_pred ---------------hhcCCCchh---hhhhhhhccccc-cCCCcchHH-----HhhhhhhheeccCcC-ceeeeec---
Confidence 011223333 556666666653 334444443 344566666666652 3333322
Q ss_pred CCCccCCCccEEEEeccCCccCCCCHHHHhhccCcceEEeccccccchhcccccccceecccccCcccCCCCCCceeccc
Q 000280 830 HEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPS 909 (1728)
Q Consensus 830 ~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 909 (1728)
..+...+|+.|+++. +++..+| ..+..++.|+.|.+.++. +.+.|+ |..++.+.+
T Consensus 263 -~~~~W~~lEtLNlSr-NQLt~LP--~avcKL~kL~kLy~n~Nk----------------L~FeGi-----PSGIGKL~~ 317 (1255)
T KOG0444|consen 263 -TEGEWENLETLNLSR-NQLTVLP--DAVCKLTKLTKLYANNNK----------------LTFEGI-----PSGIGKLIQ 317 (1255)
T ss_pred -cHHHHhhhhhhcccc-chhccch--HHHhhhHHHHHHHhccCc----------------ccccCC-----ccchhhhhh
Confidence 344556677777776 3666666 455667777776665532 112233 455666677
Q ss_pred cceecccccccccccCCCCccCCCCccCccEEEeccccccccccchHHHHhhcccceeEeeccccccc
Q 000280 910 LEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEG 977 (1728)
Q Consensus 910 L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~ 977 (1728)
|+.+...++ +++-+ |+ ++..|..|+.|.+.. +.|..++. .+.-|+.|+.|++...+++.-
T Consensus 318 Levf~aanN-~LElV-PE---glcRC~kL~kL~L~~-NrLiTLPe--aIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 318 LEVFHAANN-KLELV-PE---GLCRCVKLQKLKLDH-NRLITLPE--AIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hHHHHhhcc-ccccC-ch---hhhhhHHHHHhcccc-cceeechh--hhhhcCCcceeeccCCcCccC
Confidence 777777665 55422 22 235677777777765 66665443 455667777777777666653
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=2.2e-20 Score=225.39 Aligned_cols=476 Identities=20% Similarity=0.223 Sum_probs=290.9
Q ss_pred cCCCCCCCCCCCC-CCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEecCccCCC
Q 000280 519 LPNRDIDELPERL-ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD 597 (1728)
Q Consensus 519 l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~ 597 (1728)
.++..++.+|..+ ....+..|.+..| .....|-.+..+.-+|++||+++|.+..+|..+..+.+|+.|+++.|.|..
T Consensus 5 ~s~~~l~~ip~~i~~~~~~~~ln~~~N--~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~ 82 (1081)
T KOG0618|consen 5 ASDEQLELIPEQILNNEALQILNLRRN--SLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRS 82 (1081)
T ss_pred cccccCcccchhhccHHHHHhhhcccc--ccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhh
Confidence 3344444444333 2223455555555 555556666666666999999999999999999999999999999999885
Q ss_pred -ccccccccCCceeecCCCCCCccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCccccccccCCCcc
Q 000280 598 -VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNA 676 (1728)
Q Consensus 598 -~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 676 (1728)
|.+++++.+|++|+|.+|.+..+|.++..+++|++|++++| ....+|.- |..++.++.+..++| .+
T Consensus 83 vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~-i~~lt~~~~~~~s~N-~~---------- 149 (1081)
T KOG0618|consen 83 VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN-HFGPIPLV-IEVLTAEEELAASNN-EK---------- 149 (1081)
T ss_pred CchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh-ccCCCchh-HHhhhHHHHHhhhcc-hh----------
Confidence 78899999999999999999999999999999999999999 68888875 889999999998887 21
Q ss_pred chhhhcCCCCCCeEEEEecccc-cCchhhhccccceeEEEEeccccccccccccceEeeccccchhhhhhhHHHhhcccc
Q 000280 677 SLVELKGLSKLTTLEIHIRDAR-IMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTE 755 (1728)
Q Consensus 677 ~~~~L~~L~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~L~ 755 (1728)
+..++... .+.+++..+.+. .++.++ ..++.
T Consensus 150 -~~~lg~~~-ik~~~l~~n~l~~~~~~~i--~~l~~-------------------------------------------- 181 (1081)
T KOG0618|consen 150 -IQRLGQTS-IKKLDLRLNVLGGSFLIDI--YNLTH-------------------------------------------- 181 (1081)
T ss_pred -hhhhcccc-chhhhhhhhhcccchhcch--hhhhe--------------------------------------------
Confidence 22333333 555555544322 122111 00000
Q ss_pred ceEecccCCccccccccCcccccccCcEEeeeeccceeeeccccCcccccCCCccceeecccccccccccccCCCCCccC
Q 000280 756 DLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNRLHEDESF 835 (1728)
Q Consensus 756 ~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~~~~~ 835 (1728)
.|.|.+..-. .-. ...+++|+.|....+.. ..+ ...-|+|+.|+..+++-.+... ...-
T Consensus 182 ~ldLr~N~~~---~~d---ls~~~~l~~l~c~rn~l-s~l--------~~~g~~l~~L~a~~n~l~~~~~------~p~p 240 (1081)
T KOG0618|consen 182 QLDLRYNEME---VLD---LSNLANLEVLHCERNQL-SEL--------EISGPSLTALYADHNPLTTLDV------HPVP 240 (1081)
T ss_pred eeecccchhh---hhh---hhhccchhhhhhhhccc-ceE--------EecCcchheeeeccCcceeecc------cccc
Confidence 1111111110 001 11444555555443221 111 1123567777777654332221 2233
Q ss_pred CCccEEEEeccCCccCCCCHHHHhhccCcceEEeccccccchhcccccccceecccccCcccCCCCCCceeccccceecc
Q 000280 836 SNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSLEELDL 915 (1728)
Q Consensus 836 ~~L~~L~L~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 915 (1728)
.+|+++.++. .++..+| .++..+.+|+.+.+..+. +..++ .......+|+.|.+
T Consensus 241 ~nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~N~-l~~lp----------------------~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNLP--EWIGACANLEALNANHNR-LVALP----------------------LRISRITSLVSLSA 294 (1081)
T ss_pred ccceeeecch-hhhhcch--HHHHhcccceEecccchh-HHhhH----------------------HHHhhhhhHHHHHh
Confidence 5788888887 4778887 678889999998887743 34333 33344678888888
Q ss_pred cccccccccCCCCccCCCCccCccEEEeccccccccccchHHHHhhc-ccceeEeecccccccccccCccccccccccce
Q 000280 916 YSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLV-QLQHLEICYCWSMEGVVETNSTESRRDEGRLI 994 (1728)
Q Consensus 916 ~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~~~~L~-~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~ 994 (1728)
..| .++.+.+. ...+.+|++|+|.. ++|..+++ ..+.-+. +|..|+.+. ..+...+....
T Consensus 295 ~~n-el~yip~~----le~~~sL~tLdL~~-N~L~~lp~-~~l~v~~~~l~~ln~s~-n~l~~lp~~~e----------- 355 (1081)
T KOG0618|consen 295 AYN-ELEYIPPF----LEGLKSLRTLDLQS-NNLPSLPD-NFLAVLNASLNTLNVSS-NKLSTLPSYEE----------- 355 (1081)
T ss_pred hhh-hhhhCCCc----ccccceeeeeeehh-ccccccch-HHHhhhhHHHHHHhhhh-ccccccccccc-----------
Confidence 887 67755332 24688899999998 78887555 3333332 366666653 44444332111
Q ss_pred eeeccccceeeccCCCCcccccccccccccCCccEEEeccCCCcceeeecccccccccCCCCCcccccccCCCcceeeec
Q 000280 995 EIVFPKLLYLRLIDLPKLMGFSIGIHSVEFPSLLELQIDDCPNMKRFISISSSQDNIHANPQPLFDEKVGTPNLMTLRVS 1074 (1728)
Q Consensus 995 ~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~sL~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 1074 (1728)
..++.|+.|.+.+.. |++-+..... .+..|+.|++++. .|..||.. ...+++.|++|++|
T Consensus 356 -~~~~~Lq~LylanN~-Ltd~c~p~l~-~~~hLKVLhLsyN-rL~~fpas----------------~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 356 -NNHAALQELYLANNH-LTDSCFPVLV-NFKHLKVLHLSYN-RLNSFPAS----------------KLRKLEELEELNLS 415 (1081)
T ss_pred -hhhHHHHHHHHhcCc-ccccchhhhc-cccceeeeeeccc-ccccCCHH----------------HHhchHHhHHHhcc
Confidence 247778888777643 2221111111 3677888888776 34544321 12356777888888
Q ss_pred cccchhHHHhccCccccccccccccccEEecCCCCCcceeecCCccccCCCccEEEeccCCCcc--ccccccccCccccc
Q 000280 1075 YCHNIEEIIRHVGEDVKENRITFNQLKNLELDDLPSLTSFCLGNCTLEFPSLERVFVRNCRNMK--TFSEGVVCAPKLKK 1152 (1728)
Q Consensus 1075 ~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~l~sL~~L~i~~C~~l~--~l~~~~~~~~~L~~ 1152 (1728)
++ .++.+|.... .+..|++|...++. +..+|. ...++.|+.++++ |.++. .++... .-|+|++
T Consensus 416 GN-kL~~Lp~tva--------~~~~L~tL~ahsN~-l~~fPe---~~~l~qL~~lDlS-~N~L~~~~l~~~~-p~p~Lky 480 (1081)
T KOG0618|consen 416 GN-KLTTLPDTVA--------NLGRLHTLRAHSNQ-LLSFPE---LAQLPQLKVLDLS-CNNLSEVTLPEAL-PSPNLKY 480 (1081)
T ss_pred cc-hhhhhhHHHH--------hhhhhHHHhhcCCc-eeechh---hhhcCcceEEecc-cchhhhhhhhhhC-CCcccce
Confidence 85 4666665444 26677777665544 455552 2356777888874 44443 223222 1267777
Q ss_pred eeeecc
Q 000280 1153 VQVTKK 1158 (1728)
Q Consensus 1153 L~i~~~ 1158 (1728)
|+++|+
T Consensus 481 LdlSGN 486 (1081)
T KOG0618|consen 481 LDLSGN 486 (1081)
T ss_pred eeccCC
Confidence 777763
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=9.9e-21 Score=216.11 Aligned_cols=170 Identities=16% Similarity=0.264 Sum_probs=115.3
Q ss_pred eEEEEcCCCCCC--CCCCCC-CCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEe
Q 000280 514 SIAISLPNRDID--ELPERL-ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSL 590 (1728)
Q Consensus 514 ~~~lsl~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 590 (1728)
+|-+.+++|+.. .+|... .+.+++-|.+... ....+|+.. +.+.+|..|.+++|++.++...++.|..||.+.+
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt--~L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT--KLEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechh--hhhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 456666666654 455544 3566666666554 555667664 6677777777777777777666777777777777
Q ss_pred cCccCC---CccccccccCCceeecCCCCCCccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCcccc
Q 000280 591 EGCQVG---DVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQW 667 (1728)
Q Consensus 591 ~~~~i~---~~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 667 (1728)
..|++. .|..|.+|..|.+||||+|.+.+.|..+.+-+++-+|+||+| +|..||...+-+|+.|-.|++++|.+
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrL-- 162 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRL-- 162 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchh--
Confidence 777765 256777777777777777777777777777777777777777 57777777667777777777777665
Q ss_pred ccccCCCccchhhhcCCCCCCeEEEEecc
Q 000280 668 EKVEGGSNASLVELKGLSKLTTLEIHIRD 696 (1728)
Q Consensus 668 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 696 (1728)
...+..++.|.+|++|.+++|.
T Consensus 163 -------e~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 163 -------EMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred -------hhcCHHHHHHhhhhhhhcCCCh
Confidence 3455666666777776666553
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=1.7e-19 Score=205.73 Aligned_cols=362 Identities=17% Similarity=0.202 Sum_probs=249.1
Q ss_pred ceEEEEcCCCCCCCCC--CCCCCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccC-ccccCCCcccEEE
Q 000280 513 DSIAISLPNRDIDELP--ERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLP-SSLVCLISLRTLS 589 (1728)
Q Consensus 513 ~~~~lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~ 589 (1728)
..+-+.+++|.+.+.. ...+.++|+.+.+..| ....||... ....+|..|+|.+|.|.++. +++..+..||.||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N--~Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN--ELTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccc--hhhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 4466777888776653 2357788888888777 677777632 34556888888888888765 3477788888888
Q ss_pred ecCccCCCc--cccccccCCceeecCCCCCCccc-hHhhccccccEEeccCcccccccCccccccCcccceeccCCCccc
Q 000280 590 LEGCQVGDV--AIVGQLKKLEILSFRNSDIQQLP-REIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQ 666 (1728)
Q Consensus 590 L~~~~i~~~--~~i~~L~~L~~L~Ls~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 666 (1728)
|+.|.|+.+ ++|..=.++++|+|++|.|+.+- ..+..|.+|-+|.|+.| .++.+|...+.+|++|+.|++..|.+.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccccee
Confidence 888888853 67777788888888888888775 35778888888888888 788888887788888888888887764
Q ss_pred cccccCCCccchhhhcCCCCCCeEEEEecccccCchhh--hccccceeEEEEeccccccccccccceEeeccccchhhhh
Q 000280 667 WEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQDL--ISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLG 744 (1728)
Q Consensus 667 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~ 744 (1728)
......+.+|+.|+.|.+..|++..+..+. .+.+++.+.+..+..
T Consensus 235 --------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l------------------------- 281 (873)
T KOG4194|consen 235 --------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL------------------------- 281 (873)
T ss_pred --------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh-------------------------
Confidence 223445678888888888888777666654 344444443321110
Q ss_pred hhHHHhhccccceEecccCCccccccccCcccccccCcEEeeeeccceeeeccccCcccccCCCccceeecccccccccc
Q 000280 745 QGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKI 824 (1728)
Q Consensus 745 ~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~L~~i 824 (1728)
..+. -.. ..++..|+.|+++.+ .++.|.... ....++|+.|+|+. +.++++
T Consensus 282 ----------~~vn----------~g~---lfgLt~L~~L~lS~N-aI~rih~d~----WsftqkL~~LdLs~-N~i~~l 332 (873)
T KOG4194|consen 282 ----------QAVN----------EGW---LFGLTSLEQLDLSYN-AIQRIHIDS----WSFTQKLKELDLSS-NRITRL 332 (873)
T ss_pred ----------hhhh----------ccc---ccccchhhhhccchh-hhheeecch----hhhcccceeEeccc-cccccC
Confidence 0000 011 227788888888854 344443332 44568899999987 456666
Q ss_pred cccCCCCCccCCCccEEEEeccCCccCCCCHHHHhhccCcceEEeccccccchhcccccccceecccccCcccCCCCCCc
Q 000280 825 CHNRLHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEK 904 (1728)
Q Consensus 825 ~~~~~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~ 904 (1728)
..+. ...+..|+.|.++.+ .+..+.. ..+.++++|++|++.++..--.|. +-...+
T Consensus 333 ~~~s---f~~L~~Le~LnLs~N-si~~l~e-~af~~lssL~~LdLr~N~ls~~IE-------------------Daa~~f 388 (873)
T KOG4194|consen 333 DEGS---FRVLSQLEELNLSHN-SIDHLAE-GAFVGLSSLHKLDLRSNELSWCIE-------------------DAAVAF 388 (873)
T ss_pred ChhH---HHHHHHhhhhccccc-chHHHHh-hHHHHhhhhhhhcCcCCeEEEEEe-------------------cchhhh
Confidence 5443 355778899999884 5665543 356788999999998753221111 112344
Q ss_pred eeccccceecccccccccccCCCCccCCCCccCccEEEeccccccccccchHHHHhhcccceeEeec
Q 000280 905 VIFPSLEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICY 971 (1728)
Q Consensus 905 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~l~~ 971 (1728)
..+++|++|.+.++ +++.+....| ..+++|++|++.+ +-+..+-+ ..+..+ .|++|.+..
T Consensus 389 ~gl~~LrkL~l~gN-qlk~I~krAf---sgl~~LE~LdL~~-NaiaSIq~-nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGN-QLKSIPKRAF---SGLEALEHLDLGD-NAIASIQP-NAFEPM-ELKELVMNS 448 (873)
T ss_pred ccchhhhheeecCc-eeeecchhhh---ccCcccceecCCC-Ccceeecc-cccccc-hhhhhhhcc
Confidence 55899999999998 8888877766 6789999999998 66665433 345555 777776664
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=2e-19 Score=217.22 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=49.4
Q ss_pred ccccccCCCcceeeeccccchhHHHhccCccccccccccccccEEecCCCCCcceeecCCccccCCCccEEEeccCCCcc
Q 000280 1059 FDEKVGTPNLMTLRVSYCHNIEEIIRHVGEDVKENRITFNQLKNLELDDLPSLTSFCLGNCTLEFPSLERVFVRNCRNMK 1138 (1728)
Q Consensus 1059 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~l~sL~~L~i~~C~~l~ 1138 (1728)
||.+.+++.|+.|+++++ .+.++|+.. ...+..|++|.++++. |+.++.. ...++.|++|...++ .+.
T Consensus 376 ~p~l~~~~hLKVLhLsyN-rL~~fpas~-------~~kle~LeeL~LSGNk-L~~Lp~t--va~~~~L~tL~ahsN-~l~ 443 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYN-RLNSFPASK-------LRKLEELEELNLSGNK-LTTLPDT--VANLGRLHTLRAHSN-QLL 443 (1081)
T ss_pred hhhhccccceeeeeeccc-ccccCCHHH-------HhchHHhHHHhcccch-hhhhhHH--HHhhhhhHHHhhcCC-cee
Confidence 455567777777777765 234443322 2345666666666654 5555422 334666666665433 455
Q ss_pred ccccccccCccccceeeec
Q 000280 1139 TFSEGVVCAPKLKKVQVTK 1157 (1728)
Q Consensus 1139 ~l~~~~~~~~~L~~L~i~~ 1157 (1728)
.|| ....++.|+.++++.
T Consensus 444 ~fP-e~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 444 SFP-ELAQLPQLKVLDLSC 461 (1081)
T ss_pred ech-hhhhcCcceEEeccc
Confidence 666 455677777777764
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=1.8e-19 Score=197.08 Aligned_cols=386 Identities=19% Similarity=0.182 Sum_probs=238.8
Q ss_pred CCCCCCCCCCCC-CCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEecCccCCCc
Q 000280 520 PNRDIDELPERL-ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDV 598 (1728)
Q Consensus 520 ~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~~ 598 (1728)
.+|.+..+|+.+ .+.++..+.+.+| ...+.|+.... |+.|+.||...|-++.+|+.++.+..|..|+|.+|++..+
T Consensus 145 ~~N~i~slp~~~~~~~~l~~l~~~~n--~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~l 221 (565)
T KOG0472|consen 145 TNNQISSLPEDMVNLSKLSKLDLEGN--KLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFL 221 (565)
T ss_pred cccccccCchHHHHHHHHHHhhcccc--chhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccC
Confidence 456777777654 5677877888777 67788888766 9999999999999999999999999999999999999987
Q ss_pred cccccccCCceeecCCCCCCccchHhh-ccccccEEeccCcccccccCccccccCcccceeccCCCccccccccCCCccc
Q 000280 599 AIVGQLKKLEILSFRNSDIQQLPREIG-QLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNAS 677 (1728)
Q Consensus 599 ~~i~~L~~L~~L~Ls~~~i~~LP~~i~-~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 677 (1728)
+.|+...-|..|.++.|.|+.+|++++ +|.+|-+||+++| +++++|.+ +..|.+|+.|++++|.+ ...
T Consensus 222 Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde-~clLrsL~rLDlSNN~i---------s~L 290 (565)
T KOG0472|consen 222 PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDE-ICLLRSLERLDLSNNDI---------SSL 290 (565)
T ss_pred CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchH-HHHhhhhhhhcccCCcc---------ccC
Confidence 799999999999999999999999987 8999999999999 79999998 89999999999999887 456
Q ss_pred hhhhcCCCCCCeEEEEecccccCchhh-------hccccceeEEEEeccccccccccccceEeeccccchhhhhhhHHHh
Q 000280 678 LVELKGLSKLTTLEIHIRDARIMPQDL-------ISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMF 750 (1728)
Q Consensus 678 ~~~L~~L~~L~~L~l~~~~~~~~~~~~-------~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~ 750 (1728)
+.++|+| +|+.|-+.+|.+..+.+++ .+..|+......|..-.-.+. .... .. -+... .+ ...
T Consensus 291 p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~-e~~~--t~--~~~~~--~~--~~~ 360 (565)
T KOG0472|consen 291 PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT-ETAM--TL--PSESF--PD--IYA 360 (565)
T ss_pred Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc-cccC--CC--CCCcc--cc--hhh
Confidence 7789999 9999999999887776665 122222211111110000000 0000 00 00000 00 000
Q ss_pred hccccceEecccCCccccccccCcccccccCcEEeeeeccceeeeccccCcccccCCCccceeecccccccccccccCCC
Q 000280 751 LKRTEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNRLH 830 (1728)
Q Consensus 751 ~~~L~~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~ 830 (1728)
.-+.+.|.+.+.+....+...+. ...-.-....+++++ .+..+|... ..+..+.+.-.... +...|...
T Consensus 361 ~i~tkiL~~s~~qlt~VPdEVfe-a~~~~~Vt~VnfskN-qL~elPk~L-----~~lkelvT~l~lsn-n~isfv~~--- 429 (565)
T KOG0472|consen 361 IITTKILDVSDKQLTLVPDEVFE-AAKSEIVTSVNFSKN-QLCELPKRL-----VELKELVTDLVLSN-NKISFVPL--- 429 (565)
T ss_pred hhhhhhhcccccccccCCHHHHH-HhhhcceEEEecccc-hHhhhhhhh-----HHHHHHHHHHHhhc-CccccchH---
Confidence 11222233222211111111110 000001122233321 122233221 11111111111111 11122211
Q ss_pred CCccCCCccEEEEeccCCccCCCCHHHHhhccCcceEEeccccccchhcccccccceecccccCcccCCCCCCceecccc
Q 000280 831 EDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSL 910 (1728)
Q Consensus 831 ~~~~~~~L~~L~L~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 910 (1728)
....+++|..|+++++ -+..+| ...+.+..|+.|+++.+ ....++ .....+..|
T Consensus 430 ~l~~l~kLt~L~L~NN-~Ln~LP--~e~~~lv~Lq~LnlS~N-rFr~lP----------------------~~~y~lq~l 483 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNN-LLNDLP--EEMGSLVRLQTLNLSFN-RFRMLP----------------------ECLYELQTL 483 (565)
T ss_pred HHHhhhcceeeecccc-hhhhcc--hhhhhhhhhheeccccc-ccccch----------------------HHHhhHHHH
Confidence 3467888888888874 566776 35567777888888874 333322 111123344
Q ss_pred ceecccccccccccCCCCccCCCCccCccEEEeccccccccccchHHHHhhcccceeEeeccc
Q 000280 911 EELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCW 973 (1728)
Q Consensus 911 ~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~ 973 (1728)
+.+-.+++ .+..+.+. ++..+.+|.+|++.+ +.+..+|| .++++++|++|++.+.+
T Consensus 484 Etllas~n-qi~~vd~~---~l~nm~nL~tLDL~n-Ndlq~IPp--~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 484 ETLLASNN-QIGSVDPS---GLKNMRNLTTLDLQN-NDLQQIPP--ILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHHHhccc-cccccChH---HhhhhhhcceeccCC-CchhhCCh--hhccccceeEEEecCCc
Confidence 44444444 66655443 347888999999998 77877666 78899999999999865
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.56 E-value=2.4e-13 Score=176.76 Aligned_cols=126 Identities=23% Similarity=0.308 Sum_probs=98.4
Q ss_pred CCcceEEEecCcCccccCccccCCCcccEEEecCcc--CCCc--cccccccCCceeecCCC-CCCccchHhhccccccEE
Q 000280 559 MNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQ--VGDV--AIVGQLKKLEILSFRNS-DIQQLPREIGQLVQLRLL 633 (1728)
Q Consensus 559 l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~--i~~~--~~i~~L~~L~~L~Ls~~-~i~~LP~~i~~L~~L~~L 633 (1728)
....|...+.++.+..++.+..+- .|++|-+.++. +..+ ..|..+++|++|||++| .+.+||.+|++|.+||+|
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hhheeEEEEeccchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 456677777777777666655443 68888888875 4443 44888999999999977 788999999999999999
Q ss_pred eccCcccccccCccccccCcccceeccCCCccccccccCCCccchhhhcCCCCCCeEEEEec
Q 000280 634 DLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIR 695 (1728)
Q Consensus 634 ~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 695 (1728)
+++++ .+..+|.+ +++|.+|.+|++..+... ...+.-+..|++|++|.+...
T Consensus 601 ~L~~t-~I~~LP~~-l~~Lk~L~~Lnl~~~~~l--------~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 601 DLSDT-GISHLPSG-LGNLKKLIYLNLEVTGRL--------ESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccCC-CccccchH-HHHHHhhheecccccccc--------ccccchhhhcccccEEEeecc
Confidence 99999 79999999 999999999999876542 223445566889999888644
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.3e-16 Score=154.45 Aligned_cols=167 Identities=22% Similarity=0.358 Sum_probs=146.5
Q ss_pred CCCCCCCCCCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEecCccCC-Cccccc
Q 000280 524 IDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVG-DVAIVG 602 (1728)
Q Consensus 524 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~-~~~~i~ 602 (1728)
+.+++.-+..+++..|.++.| ....+|+.+ ..+++|.+|++++|+++++|.+++.+..||.|++.-|++. .|..||
T Consensus 23 f~~~~gLf~~s~ITrLtLSHN--Kl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHN--KLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred HhhcccccchhhhhhhhcccC--ceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 345566667777778888877 677788876 7899999999999999999999999999999999999877 479999
Q ss_pred cccCCceeecCCCCCC--ccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCccccccccCCCccchhh
Q 000280 603 QLKKLEILSFRNSDIQ--QLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVE 680 (1728)
Q Consensus 603 ~L~~L~~L~Ls~~~i~--~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 680 (1728)
.++-|++|||.+|++. .+|..+-.++.|+.|.+++| ..+-+|++ +|+|++||.|.+..|.+ -..+.+
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndl---------l~lpke 168 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDL---------LSLPKE 168 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCch---------hhCcHH
Confidence 9999999999999776 78999999999999999999 78889999 99999999999988776 457889
Q ss_pred hcCCCCCCeEEEEecccccCchhh
Q 000280 681 LKGLSKLTTLEIHIRDARIMPQDL 704 (1728)
Q Consensus 681 L~~L~~L~~L~l~~~~~~~~~~~~ 704 (1728)
++.|++|+.|+|.+|.+..+|.++
T Consensus 169 ig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHhcccceeeecChhh
Confidence 999999999999999999888876
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=1.4e-14 Score=140.59 Aligned_cols=160 Identities=21% Similarity=0.348 Sum_probs=142.5
Q ss_pred CceEEEEcCCCCCCCCCCCC-CCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEe
Q 000280 512 KDSIAISLPNRDIDELPERL-ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSL 590 (1728)
Q Consensus 512 ~~~~~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 590 (1728)
..++++.++.|.+..+|..+ ++.+|+.|.+++| .+.++|.++ +.+.+||.|++.-|.+..+|..|+.+..|.+|||
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn--qie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN--QIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccc--hhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 45788999999998887655 7899999999988 778888886 8899999999999999999999999999999999
Q ss_pred cCccCCC---ccccccccCCceeecCCCCCCccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCcccc
Q 000280 591 EGCQVGD---VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQW 667 (1728)
Q Consensus 591 ~~~~i~~---~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 667 (1728)
.+|.+.. |..|..+.-|+-|.|++|.++-+|..+++|++||.|.+++| .+-.+|.. +|.|+.|++|++.+|.+.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceee-
Confidence 9999873 78888999999999999999999999999999999999999 68889998 999999999999998873
Q ss_pred ccccCCCccchhhhcCCC
Q 000280 668 EKVEGGSNASLVELKGLS 685 (1728)
Q Consensus 668 ~~~~~~~~~~~~~L~~L~ 685 (1728)
..+.+++++.
T Consensus 187 --------vlppel~~l~ 196 (264)
T KOG0617|consen 187 --------VLPPELANLD 196 (264)
T ss_pred --------ecChhhhhhh
Confidence 3456666553
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.29 E-value=1.7e-10 Score=159.84 Aligned_cols=296 Identities=14% Similarity=0.182 Sum_probs=184.6
Q ss_pred cCccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCHHHHHHHHHH
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT-PDLQTIQNKLSS 230 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~ 230 (1728)
|.....++-|...++.+-+ ....+++.|+|++|.||||++.++.+. ++.++|+++... .+...+...++.
T Consensus 10 p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence 3344567778766655532 235689999999999999999998853 226899999754 466777777777
Q ss_pred Hhhhhhcc-------------CCCHHHHHHHHHHHHHc-CCcEEEEEeCCCCcccc--c-cccCCCcccccccCCCCCCe
Q 000280 231 DLELEFKQ-------------NENVFQRAEKLRQRLKN-VKRVLVILDNIWKLLNL--D-AVGIPFGDVKKERNDDRSRC 293 (1728)
Q Consensus 231 ~l~~~~~~-------------~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~~--~-~l~~~~~~~~~~~~~~~~g~ 293 (1728)
.++..... ..+.......+...+.. +.+++|||||+...++- . .+..-+.. ...+.
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~-------~~~~~ 153 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH-------QPENL 153 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh-------CCCCe
Confidence 77532211 01222334444455543 68999999999775321 1 11111121 34567
Q ss_pred EEEEEeCCchhhcc-cC-CCccEEEcc----CCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000280 294 TVLLTSRNRDVLCN-DM-NSQKFFLIE----VLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANAL 367 (1728)
Q Consensus 294 ~ilvTtR~~~v~~~-~~-~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~~L 367 (1728)
++|||||...-... .. .......+. +|+.+|+.++|....|.... .+.+.+|.+.++|.|+++..++..+
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHH
Confidence 89899998532210 00 112344555 99999999999987764332 3457789999999999999999887
Q ss_pred hcCCchhHHHHHHHHhcccccccccchhhHHHHH-HHhHhcCCchhHHHHHHhhcccCCCCCcCHHHHHHHHHhcCcccC
Q 000280 368 KNKRLYVWNDSLERLRNSTSRQIHGMEENVYSSI-ELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSN 446 (1728)
Q Consensus 368 ~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l-~lsy~~L~~~~~k~~fl~~a~fp~~~~i~~~~li~~w~~~g~~~~ 446 (1728)
+..... .......+... ....+...+ .-.|+.||++ .+..++..|+++ .|+.+.+ .. +.+.
T Consensus 230 ~~~~~~-~~~~~~~~~~~-------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~l~-~~-----l~~~ 291 (903)
T PRK04841 230 RQNNSS-LHDSARRLAGI-------NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDALI-VR-----VTGE 291 (903)
T ss_pred hhCCCc-hhhhhHhhcCC-------CchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHHHH-HH-----HcCC
Confidence 654321 11111111100 012244333 3347899998 799999999987 3433322 11 1111
Q ss_pred cccHHHHHHHHHHHHHHHHhcccccc-CCC--CcEEEcHHHHHHHHHHhc
Q 000280 447 VRTSEAARNRVYTLVDNLKASSLLLD-GDK--DEVKLHDIIYAVAVSIAR 493 (1728)
Q Consensus 447 ~~~~~~~~~~~~~~l~~L~~~~ll~~-~~~--~~~~mHdlv~~~a~~~~~ 493 (1728)
. .....+++|.+++++.. .+. ..|+.|+++++++.....
T Consensus 292 -~-------~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 292 -E-------NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred -C-------cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 1 12346889999999653 232 589999999999988763
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.28 E-value=1.6e-11 Score=156.08 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=66.7
Q ss_pred CcceEEEecCcCccccCccccCCCcccEEEecCccCCCccccccccCCceeecCCCCCCccchHhhccccccEEeccCcc
Q 000280 560 NELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCR 639 (1728)
Q Consensus 560 ~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~ 639 (1728)
..-.+|+++++.++.+|..+. .+|+.|++.+|.++.++. .+.+|++|+|++|.++.+|.. ..+|+.|++++|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N- 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN- 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---ccccceeeccCC-
Confidence 334566777776666666654 366777777766665332 245677777777766666643 346666777666
Q ss_pred cccccCccccccCcccceeccCCCccccccccCCCccchhhhcCCCCCCeEEEEecccccC
Q 000280 640 RLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIM 700 (1728)
Q Consensus 640 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~ 700 (1728)
.+..+|.. +.+|+.|++++|.+. ..+. .+++|+.|+++.|.+..+
T Consensus 273 ~L~~Lp~l----p~~L~~L~Ls~N~Lt---------~LP~---~p~~L~~LdLS~N~L~~L 317 (788)
T PRK15387 273 PLTHLPAL----PSGLCKLWIFGNQLT---------SLPV---LPPGLQELSVSDNQLASL 317 (788)
T ss_pred chhhhhhc----hhhcCEEECcCCccc---------cccc---cccccceeECCCCccccC
Confidence 46655542 244556666666542 0111 134566666666554443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=1.4e-11 Score=158.18 Aligned_cols=136 Identities=13% Similarity=0.263 Sum_probs=94.7
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEecCc
Q 000280 514 SIAISLPNRDIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGC 593 (1728)
Q Consensus 514 ~~~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~ 593 (1728)
...+.+.++++..+|..+ .++++.|.+.+| ....+|..++ .+|++|++++|.++.+|..+. .+|+.|+|++|
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N--~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNN--ELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCC--CCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 356677777777777654 356778888777 5566777664 478888888888888877654 36788888888
Q ss_pred cCCC-ccccccccCCceeecCCCCCCccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCcc
Q 000280 594 QVGD-VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFS 665 (1728)
Q Consensus 594 ~i~~-~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 665 (1728)
.+.. |..+. .+|++|++++|++..+|..+. .+|++|++++| .++.+|.. +. .+|++|++++|.+
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSL 316 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCcc
Confidence 7765 34343 468888888888877777664 47888888887 67777765 32 4677777777655
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.25 E-value=4.9e-11 Score=151.81 Aligned_cols=255 Identities=16% Similarity=0.117 Sum_probs=163.7
Q ss_pred EEEEcCCCCCCCCCCCCCCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEecCcc
Q 000280 515 IAISLPNRDIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQ 594 (1728)
Q Consensus 515 ~~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~ 594 (1728)
..+.+..+.+..+|..+. ++|+.|.+..| ....+|. .+++|++|++++|.++.+|.. ..+|+.|++++|.
T Consensus 204 ~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N--~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP-AHITTLVIPDN--NLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred cEEEcCCCCCCcCCcchh-cCCCEEEccCC--cCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 345667777777777553 47888888877 5666664 257889999999988888863 3578888998888
Q ss_pred CCCccccccccCCceeecCCCCCCccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCccccccccCCC
Q 000280 595 VGDVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGS 674 (1728)
Q Consensus 595 i~~~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 674 (1728)
+..++. -+.+|+.|++++|.++.+|.. +.+|+.|++++| .+..+|.. . .+|+.|++++|.+.
T Consensus 274 L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~L~Ls~N~L~-------- 335 (788)
T PRK15387 274 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-P---SELCKLWAYNNQLT-------- 335 (788)
T ss_pred hhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC-c---ccccccccccCccc--------
Confidence 775432 235688889999988888863 467889999988 68877763 2 35677788777663
Q ss_pred ccchhhhcCCCCCCeEEEEecccccCchhhhccccceeEEEEeccccccccccccceEeeccccchhhhhhhHHHhhccc
Q 000280 675 NASLVELKGLSKLTTLEIHIRDARIMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRT 754 (1728)
Q Consensus 675 ~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~L 754 (1728)
..+ . -..+|+.|+++.|.+..+|... .+|..|
T Consensus 336 -~LP-~--lp~~Lq~LdLS~N~Ls~LP~lp--~~L~~L------------------------------------------ 367 (788)
T PRK15387 336 -SLP-T--LPSGLQELSVSDNQLASLPTLP--SELYKL------------------------------------------ 367 (788)
T ss_pred -ccc-c--cccccceEecCCCccCCCCCCC--ccccee------------------------------------------
Confidence 111 1 1246888888888777666421 222222
Q ss_pred cceEecccCCccccccccCcccccccCcEEeeeeccceeeeccccCcccccCCCccceeecccccccccccccCCCCCcc
Q 000280 755 EDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNRLHEDES 834 (1728)
Q Consensus 755 ~~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~L~~i~~~~~~~~~~ 834 (1728)
.+.+... .. ++. ...+|+.|+++++. +..+|. ..++|+.|+++++ .+..++. .
T Consensus 368 ---~Ls~N~L-~~-LP~-----l~~~L~~LdLs~N~-Lt~LP~--------l~s~L~~LdLS~N-~LssIP~-------l 420 (788)
T PRK15387 368 ---WAYNNRL-TS-LPA-----LPSGLKELIVSGNR-LTSLPV--------LPSELKELMVSGN-RLTSLPM-------L 420 (788)
T ss_pred ---hhhcccc-cc-Ccc-----cccccceEEecCCc-ccCCCC--------cccCCCEEEccCC-cCCCCCc-------c
Confidence 2211110 00 111 12457777776543 333332 2356777887774 3554432 2
Q ss_pred CCCccEEEEeccCCccCCCCHHHHhhccCcceEEecccccc
Q 000280 835 FSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSL 875 (1728)
Q Consensus 835 ~~~L~~L~L~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 875 (1728)
+.+|+.|+++++ +++.+| ..+..+++|+.|++++++.-
T Consensus 421 ~~~L~~L~Ls~N-qLt~LP--~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 421 PSGLLSLSVYRN-QLTRLP--ESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhhhhccC-cccccC--hHHhhccCCCeEECCCCCCC
Confidence 346788888874 677787 34678889999999887543
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.16 E-value=5.3e-11 Score=152.87 Aligned_cols=162 Identities=18% Similarity=0.299 Sum_probs=125.8
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEec
Q 000280 512 KDSIAISLPNRDIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLE 591 (1728)
Q Consensus 512 ~~~~~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 591 (1728)
..++.+.+.+|.+..+|..+. ++|++|.+.+| ....+|..++ .+|+.|+|++|.+..+|..+. .+|++|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N--~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ-GNIKTLYANSN--QLTSIPATLP---DTIQEMELSINRITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc-cCCCEEECCCC--ccccCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEECc
Confidence 467899999999999987653 69999999987 5667887663 579999999999999998775 589999999
Q ss_pred CccCCC-ccccccccCCceeecCCCCCCccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCccccccc
Q 000280 592 GCQVGD-VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKV 670 (1728)
Q Consensus 592 ~~~i~~-~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 670 (1728)
+|.++. |..+. .+|++|++++|+++.+|..+. .+|++|++++| .+..+|.. + .++|++|++++|.+.
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~-l--~~sL~~L~Ls~N~Lt---- 338 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-SLTALPET-L--PPGLKTLEAGENALT---- 338 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC-ccccCCcc-c--cccceeccccCCccc----
Confidence 999886 44454 589999999999999997664 47999999999 68888875 3 367888888887653
Q ss_pred cCCCccchhhhcCCCCCCeEEEEecccccC
Q 000280 671 EGGSNASLVELKGLSKLTTLEIHIRDARIM 700 (1728)
Q Consensus 671 ~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~ 700 (1728)
..+..+ .++|+.|+++.|.+..+
T Consensus 339 -----~LP~~l--~~sL~~L~Ls~N~L~~L 361 (754)
T PRK15370 339 -----SLPASL--PPELQVLDVSKNQITVL 361 (754)
T ss_pred -----cCChhh--cCcccEEECCCCCCCcC
Confidence 122222 24677777766654433
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.14 E-value=9e-09 Score=127.27 Aligned_cols=292 Identities=17% Similarity=0.157 Sum_probs=169.4
Q ss_pred cccccchHHHHHHHHHHHh----cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHH
Q 000280 155 YEQFDSRMKIFQNIMEVLK----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~----~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 230 (1728)
+..|+||++++++|...+. +.....+.|+|++|+|||++++.++++.......-.++||++....+...++..|+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 3568999999999999985 234567889999999999999999998865432334677777777788889999999
Q ss_pred Hhhhh-hc-cCCCHHHHHHHHHHHHHc-CCcEEEEEeCCCCcc------ccccccCCCcccccccCCCCCCeEEEEEeCC
Q 000280 231 DLELE-FK-QNENVFQRAEKLRQRLKN-VKRVLVILDNIWKLL------NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN 301 (1728)
Q Consensus 231 ~l~~~-~~-~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~ 301 (1728)
++... .+ ...+..+....+.+.+.+ ++..+||||+++... .+..+...+.. . .+.+..+|.++..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~----~--~~~~v~vI~i~~~ 182 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE----Y--PGARIGVIGISSD 182 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc----c--CCCeEEEEEEECC
Confidence 88652 11 123455666777777763 456899999998753 12222111111 0 1112335666665
Q ss_pred chhhcc------cCCCccEEEccCCCHHHHHHHHHHHhCCCC-CCCchHHHHHHHHHHh----CCChHHHHHHHHHH--h
Q 000280 302 RDVLCN------DMNSQKFFLIEVLSYEEAWCLFEKIVGDSA-KASDFRVIADEIVRRC----GGLPVAIKTIANAL--K 368 (1728)
Q Consensus 302 ~~v~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~i~~~c----~glPLai~~~a~~L--~ 368 (1728)
..+... ..-....+.+++++.++..+++..++.... ...-.+++++.|++.+ |..+.|+.++-.+. +
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 543221 011135689999999999999998773211 1111233444555544 55677776664432 1
Q ss_pred ---cCCchh---HHHHHHHHhcccccccccchhhHHHHHHHhHhcCCchhHHHHHHhhccc-C-CCCCcCHHHHHHH--H
Q 000280 369 ---NKRLYV---WNDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFRLCALR-K-DGSPIPIDDLMRY--G 438 (1728)
Q Consensus 369 ---~~~~~~---w~~~~~~l~~~~~~~~~~~~~~~~~~l~lsy~~L~~~~~k~~fl~~a~f-p-~~~~i~~~~li~~--w 438 (1728)
+..... ++.+.+.+. .....-.+..||.++ |..+..++.. . +...+...++... .
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~~-k~~L~ai~~~~~~~~~~~~~~~i~~~y~~ 327 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLHE-KLLLRAIVRLLKKGGDEVTTGEVYEEYKE 327 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHHH-HHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 112112 333333321 122344678898873 4443333322 1 1134555555432 2
Q ss_pred HhcCcccCcccHHHHHHHHHHHHHHHHhccccc
Q 000280 439 IGLGLFSNVRTSEAARNRVYTLVDNLKASSLLL 471 (1728)
Q Consensus 439 ~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~ 471 (1728)
++..+-.... ....+.++++.|...|+|.
T Consensus 328 l~~~~~~~~~----~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 328 LCEELGYEPR----THTRFYEYINKLDMLGIIN 356 (394)
T ss_pred HHHHcCCCcC----cHHHHHHHHHHHHhcCCeE
Confidence 2211100110 2244567889999999986
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.13 E-value=1.1e-12 Score=146.42 Aligned_cols=301 Identities=18% Similarity=0.187 Sum_probs=171.1
Q ss_pred cccccccccCCCCccccccCCCCCccccccccEEEeccCCCCcccCChhhhhhcCCCcEEEEeccCCcceeeeccccCCC
Q 000280 1186 HDIKDLKLSQFPHLKEIWHGQALNVSIFSNLRSLGVDNCTNMSSAIPANLLRCLNNLERLKVRNCDSLEEVFHLEDVNAD 1265 (1728)
Q Consensus 1186 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 1265 (1728)
..|+.|.+++|.....-... .....++++++|.+.+|.++++..-.+....++.|+.|++..|.+++...-.
T Consensus 138 g~lk~LSlrG~r~v~~sslr--t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk------ 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLR--TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK------ 209 (483)
T ss_pred cccccccccccccCCcchhh--HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH------
Confidence 34566666666543221111 1124457777777788877776555556667778888888888777654321
Q ss_pred CCcCCcccccceEecccCCCcceeccCcccccccccccceEeecCCCcceeccCcccccccccCcccccccCCccccccc
Q 000280 1266 EHFGPLFPKLYELELIDLPKLKRFCNFKWNIIELLSLSSLWIENCPNMETFISNSTSINLAESMEPQEMTSADVQPLFDE 1345 (1728)
Q Consensus 1266 ~~~~~~lp~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 1345 (1728)
.+...+|+|+.|+++.||....-. ...-...+..++.+...||.+++.-. +..
T Consensus 210 -~la~gC~kL~~lNlSwc~qi~~~g-v~~~~rG~~~l~~~~~kGC~e~~le~------------------------l~~- 262 (483)
T KOG4341|consen 210 -YLAEGCRKLKYLNLSWCPQISGNG-VQALQRGCKELEKLSLKGCLELELEA------------------------LLK- 262 (483)
T ss_pred -HHHHhhhhHHHhhhccCchhhcCc-chHHhccchhhhhhhhcccccccHHH------------------------HHH-
Confidence 122237778888888877766510 00011234445555555555433200 000
Q ss_pred ccccccccceeEeecCchhhhccCCCCCCCCCccEEEEecCCCcccccchhHHHhcCCCCceEecccccceeeecccccc
Q 000280 1346 KVALPILRQLTIICMDNLKIWQEKLTLDSFCNLYYLRIENCNKLSNIFPWSMLERLQNLDDLRVVCCDSVQEIFELRALN 1425 (1728)
Q Consensus 1346 ~~~l~~L~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~ 1425 (1728)
....+.-+-++++.+|..+++...+.+...+..|+.|+.++|..+.+.+-..
T Consensus 263 -------------------------~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a--- 314 (483)
T KOG4341|consen 263 -------------------------AAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA--- 314 (483)
T ss_pred -------------------------HhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH---
Confidence 1112234445556677777766666666667777777777776544322100
Q ss_pred CcccCCCcCCCCCCCCCccccCccceeeccCCCCcccccCCcccCCCcccceEEEeccccchhhcccccccccCCCCCcC
Q 000280 1426 GWDTHNRTTTQLPETIPSFVFPQLTFLILRGLPRLKSFYPGVHISEWPVLKKLVVWECAEVELLASEFFGLQETPANSQH 1505 (1728)
Q Consensus 1426 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~ 1505 (1728)
-.++.++|+.|.+..|.++++........+|+.|+.+++.+|..+.+-.-..+
T Consensus 315 ----------------Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl----------- 367 (483)
T KOG4341|consen 315 ----------------LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL----------- 367 (483)
T ss_pred ----------------HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh-----------
Confidence 01335677777777777776666555556677777777777765544311100
Q ss_pred CccccccccccccccccccceeecccccccccccCCCCCc-ccccCCccEEEEecCCCcccccchhhhhhcccccEEEEc
Q 000280 1506 DINVPQPLFSIYKIGFRCLEDLELSTLPKLLHLWKGKSKL-SHVFQNLTTLDVSICDGLINLVTLAAAESLVKLARMKIA 1584 (1728)
Q Consensus 1506 ~~~~~~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~-~~~~~~L~~L~i~~C~~l~~l~~~~~~~~L~~L~~L~i~ 1584 (1728)
--+++.||.|.|++|..+++-...+... ......|+.+++++|+.+++- ......++++|+.+++.
T Consensus 368 ------------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 368 ------------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA-TLEHLSICRNLERIELI 434 (483)
T ss_pred ------------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH-HHHHHhhCcccceeeee
Confidence 0034667777777776665542222211 233467777888888877775 44556677788888888
Q ss_pred cccch
Q 000280 1585 ACGKM 1589 (1728)
Q Consensus 1585 ~C~~l 1589 (1728)
+|..+
T Consensus 435 ~~q~v 439 (483)
T KOG4341|consen 435 DCQDV 439 (483)
T ss_pred chhhh
Confidence 87765
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.12 E-value=2.4e-12 Score=143.64 Aligned_cols=305 Identities=16% Similarity=0.162 Sum_probs=212.3
Q ss_pred ccccEEEeccCCCCcccCChhhhhhcCCCcEEEEeccCCcceeeeccccCCCCCcCCcccccceEecccCCCcceeccCc
Q 000280 1214 SNLRSLGVDNCTNMSSAIPANLLRCLNNLERLKVRNCDSLEEVFHLEDVNADEHFGPLFPKLYELELIDLPKLKRFCNFK 1293 (1728)
Q Consensus 1214 ~~L~~L~i~~c~~l~~~~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~lp~L~~L~l~~~~~L~~~~~~~ 1293 (1728)
..|++|.+.+|.....-..-....+++++++|.+.+|..++...-. ++...+++|+.|.+..|++++...-.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~-------sla~~C~~l~~l~L~~c~~iT~~~Lk- 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLL-------SLARYCRKLRHLNLHSCSSITDVSLK- 209 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHH-------HHHHhcchhhhhhhcccchhHHHHHH-
Confidence 5789999999998876555567788999999999999977654321 33344889999999999998865321
Q ss_pred ccccccccccceEeecCCCcceeccCcccccccccCcccccccCCcccccccccccccccceeEeecCchhhhccCCCCC
Q 000280 1294 WNIIELLSLSSLWIENCPNMETFISNSTSINLAESMEPQEMTSADVQPLFDEKVALPILRQLTIICMDNLKIWQEKLTLD 1373 (1728)
Q Consensus 1294 ~~~~~~~~L~~L~i~~C~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~~L~~l~l~~~~~~~~~~~~~ 1373 (1728)
.....|++|++|.++-|+.+++ +.++.+ ..
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~---------------------~gv~~~-----------------------------~r 239 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISG---------------------NGVQAL-----------------------------QR 239 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhc---------------------CcchHH-----------------------------hc
Confidence 1223589999999999988765 111111 12
Q ss_pred CCCCccEEEEecCCCcccccchhHHHhcCCCCceEecccccceeeeccccccCcccCCCcCCCCCCCCCccccCccceee
Q 000280 1374 SFCNLYYLRIENCNKLSNIFPWSMLERLQNLDDLRVVCCDSVQEIFELRALNGWDTHNRTTTQLPETIPSFVFPQLTFLI 1453 (1728)
Q Consensus 1374 ~~~~L~~L~i~~C~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 1453 (1728)
.+..|+.+...+|..+..-.-..+...+.-+-++++..|..+.+.-. |. ....+..||.|.
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~------~~-------------i~~~c~~lq~l~ 300 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL------WL-------------IACGCHALQVLC 300 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH------HH-------------HhhhhhHhhhhc
Confidence 23456667677888766433333455566677777779965543210 10 112366899999
Q ss_pred ccCCCCcccccCCcccCCCcccceEEEeccccchhhcccccccccCCCCCcCCccccccccccccccccccceeeccccc
Q 000280 1454 LRGLPRLKSFYPGVHISEWPVLKKLVVWECAEVELLASEFFGLQETPANSQHDINVPQPLFSIYKIGFRCLEDLELSTLP 1533 (1728)
Q Consensus 1454 l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~c~ 1533 (1728)
.++|.++++.........+++|+.+.+++|..+.+.-...++. +.+.|+.|.+.+|.
T Consensus 301 ~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r-----------------------n~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 301 YSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR-----------------------NCPHLERLDLEECG 357 (483)
T ss_pred ccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-----------------------CChhhhhhcccccc
Confidence 9999999888766666789999999999999866552211110 23567888888876
Q ss_pred ccccccCCCCCcccccCCccEEEEecCCCcccccch---hhhhhcccccEEEEccccchhhhcccccccccccccccccc
Q 000280 1534 KLLHLWKGKSKLSHVFQNLTTLDVSICDGLINLVTL---AAAESLVKLARMKIAACGKMEKVIQQVGAEVVEEDSIATFN 1610 (1728)
Q Consensus 1534 ~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~---~~~~~L~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~ 1610 (1728)
....-...+ .+..++.|+.|.+++|..+++.... +...++..|+.+.+.+|+.+.+..-.+ ....+
T Consensus 358 ~~~d~tL~s--ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~---------l~~c~ 426 (483)
T KOG4341|consen 358 LITDGTLAS--LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH---------LSICR 426 (483)
T ss_pred eehhhhHhh--hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH---------HhhCc
Confidence 654432121 2567899999999999999887322 233567889999999999887643332 24578
Q ss_pred ccceeccccCCCccccccC
Q 000280 1611 QLQYLGIDCLPSLTCFCFG 1629 (1728)
Q Consensus 1611 ~L~~L~L~~lp~L~~~~~~ 1629 (1728)
.|++++|..|...++-...
T Consensus 427 ~Leri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 427 NLERIELIDCQDVTKEAIS 445 (483)
T ss_pred ccceeeeechhhhhhhhhH
Confidence 9999999999888776665
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.09 E-value=1.1e-11 Score=137.17 Aligned_cols=134 Identities=20% Similarity=0.257 Sum_probs=71.7
Q ss_pred CCCCCCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCcc-ccCCCcccEEEecCccCCC--ccccccc
Q 000280 528 PERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSS-LVCLISLRTLSLEGCQVGD--VAIVGQL 604 (1728)
Q Consensus 528 ~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~L~L~~~~i~~--~~~i~~L 604 (1728)
|..-.|+...-..++........||.++ ...-..++|..|.|+.+|+. |+.++.||.|||++|.|+. |..|.+|
T Consensus 38 P~pC~Cs~~~g~~VdCr~~GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL 114 (498)
T KOG4237|consen 38 PAPCTCSDVEGGIVDCRGKGLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL 114 (498)
T ss_pred CCCcccCCCCCceEEccCCCcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhh
Confidence 4445555554444544434555666544 33444556666666666643 6666666666666666553 3555555
Q ss_pred cCCceeecCC-CCCCccchH-hhccccccEEeccCcccccccCccccccCcccceeccCCCcc
Q 000280 605 KKLEILSFRN-SDIQQLPRE-IGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFS 665 (1728)
Q Consensus 605 ~~L~~L~Ls~-~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 665 (1728)
..|-.|-+-+ |+|+.+|+. ++.|..||.|.+.-| .+.-++.+.+..|.+|..|.+.+|.+
T Consensus 115 ~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 115 ASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred HhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhh
Confidence 5544444433 455555543 455555555555554 34444444455555555555554443
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.05 E-value=4e-10 Score=128.87 Aligned_cols=202 Identities=21% Similarity=0.328 Sum_probs=109.0
Q ss_pred ccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHH---------HHH
Q 000280 158 FDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQ---------NKL 228 (1728)
Q Consensus 158 ~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~---------~~i 228 (1728)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++++.+..+.. .+ .++|+...+........ ..+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 79999999999999987767899999999999999999999987422 12 44555544443222211 112
Q ss_pred HHHhhhhhcc----------CCCHHHHHHHHHHHHHc-CCcEEEEEeCCCCcc-ccc---cccCCCcccccccCCCCCCe
Q 000280 229 SSDLELEFKQ----------NENVFQRAEKLRQRLKN-VKRVLVILDNIWKLL-NLD---AVGIPFGDVKKERNDDRSRC 293 (1728)
Q Consensus 229 ~~~l~~~~~~----------~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~-~~~---~l~~~~~~~~~~~~~~~~g~ 293 (1728)
...++...+. ..........+.+.+.+ +++++||+||+.... ..+ .+...+-...+... .....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ 157 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQNV 157 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccCCc
Confidence 2223222110 12233444555666653 356999999998776 211 22111111111222 23333
Q ss_pred EEEEEeCCchhhcc-------cCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000280 294 TVLLTSRNRDVLCN-------DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1728)
Q Consensus 294 ~ilvTtR~~~v~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1728)
.+|+++........ ..+....+.+++|+.+++++++...+.....-+.-++..++|+..+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 44455444333221 2333456999999999999999997743311122356678999999999988764
No 28
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.04 E-value=1.9e-08 Score=117.27 Aligned_cols=186 Identities=18% Similarity=0.228 Sum_probs=116.7
Q ss_pred cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHH--
Q 000280 174 DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQ-- 251 (1728)
Q Consensus 174 ~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-- 251 (1728)
+.+.+++.|+|++|+||||+++.+++..... .+ .++|+ +....+..+++..|+..++.+.. ..........+.+
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFL 115 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHH
Confidence 3445689999999999999999999887422 11 12233 33345777889999998887644 3333333334433
Q ss_pred --HHHcCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEEEeCCchhhc--------ccCCCccEEEccC
Q 000280 252 --RLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC--------NDMNSQKFFLIEV 319 (1728)
Q Consensus 252 --~l~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~--------~~~~~~~~~~l~~ 319 (1728)
....+++.++|+||++... .++.+.. +... .........|++|....-... ........+.+++
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~-l~~~---~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRM-LSNF---QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHH-HhCc---ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCC
Confidence 3335788999999998863 3333321 1110 000223334556654321100 0011234678999
Q ss_pred CCHHHHHHHHHHHhC---CCCCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000280 320 LSYEEAWCLFEKIVG---DSAKASDFRVIADEIVRRCGGLPVAIKTIANAL 367 (1728)
Q Consensus 320 L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~i~~~c~glPLai~~~a~~L 367 (1728)
++.+|..+++...+. ......-.++.++.|++.++|.|..|..++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999987763 211222335788999999999999999998776
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.03 E-value=8.5e-09 Score=126.57 Aligned_cols=293 Identities=17% Similarity=0.169 Sum_probs=188.5
Q ss_pred ccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHh
Q 000280 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDL 232 (1728)
Q Consensus 154 ~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l 232 (1728)
.....+-|...++.+.+ ..+.+.+.|..++|.||||++.+.+... ..-..|.|.++++.. ++..+...++..+
T Consensus 17 ~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~---~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 17 RPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELA---ADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred CcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhc---CcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 34556667665544432 2478999999999999999999998733 223568999998664 6888888888888
Q ss_pred hhhhcc-------------CCCHHHHHHHHHHHHHc-CCcEEEEEeCCCCcc------ccccccCCCcccccccCCCCCC
Q 000280 233 ELEFKQ-------------NENVFQRAEKLRQRLKN-VKRVLVILDNIWKLL------NLDAVGIPFGDVKKERNDDRSR 292 (1728)
Q Consensus 233 ~~~~~~-------------~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~~~~~~~~g 292 (1728)
+.-.+. ..+.......+...+.. .++..+||||-.-.. .++.+... ...+
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~----------~P~~ 160 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH----------APEN 160 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh----------CCCC
Confidence 743321 22333344555554442 378999999965442 23333333 3457
Q ss_pred eEEEEEeCCchhhcc--cCCCccEEEcc----CCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHH
Q 000280 293 CTVLLTSRNRDVLCN--DMNSQKFFLIE----VLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANA 366 (1728)
Q Consensus 293 ~~ilvTtR~~~v~~~--~~~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~~ 366 (1728)
-.+|||||+..-... ..-.+..++++ .|+.+|+.++|....+...+ +.-++.+.+...|-+-|+..++=.
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHH
Confidence 889999999854331 01112233333 68999999999987754333 233678999999999999999988
Q ss_pred HhcCCchhHHHHHHHHhcccccccccchhhHH-HHHHHhHhcCCchhHHHHHHhhcccCCCCCcCHHHHHHHHHhcCccc
Q 000280 367 LKNKRLYVWNDSLERLRNSTSRQIHGMEENVY-SSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFS 445 (1728)
Q Consensus 367 L~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~-~~l~lsy~~L~~~~~k~~fl~~a~fp~~~~i~~~~li~~w~~~g~~~ 445 (1728)
+++....+ ..... +.+....+. -...=-++.||++ ++..++.+|+++. +. +.|+..-.+
T Consensus 237 ~~~~~~~~--q~~~~--------LsG~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~-f~---~eL~~~Ltg----- 296 (894)
T COG2909 237 LRNNTSAE--QSLRG--------LSGAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSR-FN---DELCNALTG----- 296 (894)
T ss_pred ccCCCcHH--HHhhh--------ccchHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHH-hh---HHHHHHHhc-----
Confidence 88443322 11111 111111111 1223456789998 7999999999973 11 233222111
Q ss_pred CcccHHHHHHHHHHHHHHHHhccccc---cCCCCcEEEcHHHHHHHHHHhcc
Q 000280 446 NVRTSEAARNRVYTLVDNLKASSLLL---DGDKDEVKLHDIIYAVAVSIARD 494 (1728)
Q Consensus 446 ~~~~~~~~~~~~~~~l~~L~~~~ll~---~~~~~~~~mHdlv~~~a~~~~~~ 494 (1728)
++.+..++++|.+++|+. +.+...|+.|+++.+|.+..-+.
T Consensus 297 --------~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 297 --------EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred --------CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 122345799999999985 23338999999999999877665
No 30
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.01 E-value=8.7e-08 Score=117.23 Aligned_cols=300 Identities=14% Similarity=0.126 Sum_probs=167.5
Q ss_pred ccccchHHHHHHHHHHHhc----CCceEEEEEcCCcchHHHHHHHHHHHHHhcc-CC---CeeEEEEECCCCCHHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLKD----TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK-LF---DKVVFVEVTQTPDLQTIQNK 227 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~----~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~-~f---~~~~wv~~~~~~~~~~~~~~ 227 (1728)
..|+||++++++|..++.+ ...+.+.|+|++|+|||++++.+++...... .. -.++|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4689999999999999873 3456899999999999999999999774321 11 14678888777778889999
Q ss_pred HHHHhh---hhhc-cCCCHHHHHHHHHHHHH-cCCcEEEEEeCCCCcc-ccccccCCCcccccccCCCCCCeEEEEEeCC
Q 000280 228 LSSDLE---LEFK-QNENVFQRAEKLRQRLK-NVKRVLVILDNIWKLL-NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN 301 (1728)
Q Consensus 228 i~~~l~---~~~~-~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~-~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~ 301 (1728)
|+.++. ...+ ...+..+....+.+.+. .+++++||||+++... ..+.+...+.......-..+....+|++|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 999883 3222 12234455566666665 3467899999998772 1111111111000000001123445555544
Q ss_pred chhhcc------cCCCccEEEccCCCHHHHHHHHHHHhCC----CCCCCchHHHHHHHHHHhCCChHHH-HHHHHHH--h
Q 000280 302 RDVLCN------DMNSQKFFLIEVLSYEEAWCLFEKIVGD----SAKASDFRVIADEIVRRCGGLPVAI-KTIANAL--K 368 (1728)
Q Consensus 302 ~~v~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~----~~~~~~~~~~~~~i~~~c~glPLai-~~~a~~L--~ 368 (1728)
...... ..-....+.+++++.+|..+++..++.. ..-.++..+.+.+++....|.|-.+ .++-.+. .
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 432111 0111357899999999999999988731 1112222234445666677888443 3322211 1
Q ss_pred ---cCCchhHHHHHHHHhcccccccccchhhHHHHHHHhHhcCCchhHHHHHHhhccc--CCCCCcCHHHHHHHHH--hc
Q 000280 369 ---NKRLYVWNDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFRLCALR--KDGSPIPIDDLMRYGI--GL 441 (1728)
Q Consensus 369 ---~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~lsy~~L~~~~~k~~fl~~a~f--p~~~~i~~~~li~~w~--~~ 441 (1728)
+......+++.+.+.... .....-.+..||.++ +..+..++.. .++..+...++...+. ++
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~-----------~~~~~~~i~~l~~~~-~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIE-----------KDRLLELIRGLPTHS-KLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHH-----------HHHHHHHHHcCCHHH-HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 111122332222111110 123344667888773 5444443321 1344566666655331 11
Q ss_pred Cc-ccCcccHHHHHHHHHHHHHHHHhcccccc
Q 000280 442 GL-FSNVRTSEAARNRVYTLVDNLKASSLLLD 472 (1728)
Q Consensus 442 g~-~~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 472 (1728)
.+ +.+ .....+.++++.|...|++..
T Consensus 323 ~~~~~~-----~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 323 DIGVDP-----LTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred hcCCCC-----CcHHHHHHHHHHHHhcCCeEE
Confidence 11 111 123566778999999999863
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.97 E-value=3.2e-11 Score=133.43 Aligned_cols=138 Identities=23% Similarity=0.363 Sum_probs=116.7
Q ss_pred CCCCCCCCCCCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCcccc-CccccCCCcccEEEecC-ccCCCc--
Q 000280 523 DIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSL-PSSLVCLISLRTLSLEG-CQVGDV-- 598 (1728)
Q Consensus 523 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~-~~i~~~-- 598 (1728)
++.++|..+- +....+.+..| .+..||+.+|+.+++||.||||+|.|+.+ |+.|..|..|-.|-+-+ |+|+++
T Consensus 57 GL~eVP~~LP-~~tveirLdqN--~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 57 GLTEVPANLP-PETVEIRLDQN--QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcccCcccCC-CcceEEEeccC--CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 4555665442 24456778877 88999999999999999999999999986 78899999988776666 889975
Q ss_pred cccccccCCceeecCCCCCCccc-hHhhccccccEEeccCcccccccCccccccCcccceeccCCCc
Q 000280 599 AIVGQLKKLEILSFRNSDIQQLP-REIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSF 664 (1728)
Q Consensus 599 ~~i~~L~~L~~L~Ls~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 664 (1728)
..|++|..|+-|.+.-|++.-++ +.+..|.+|..|.+.+| .+..++...+..+.+++++.+..|.
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 78999999999999999998665 56899999999999999 7999999779999999999887654
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.95 E-value=1.8e-08 Score=119.73 Aligned_cols=276 Identities=14% Similarity=0.097 Sum_probs=150.5
Q ss_pred cccccchHHHHHHHHHHHh-----cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHH
Q 000280 155 YEQFDSRMKIFQNIMEVLK-----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLS 229 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~-----~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (1728)
...|+|+++.+++|..++. ......+.++|++|+|||+||+.+++..... + ..+..........+ ...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhH-HHHH
Confidence 3579999999999988886 2345678899999999999999999987421 1 12222111112222 2222
Q ss_pred HHhhhhh----ccCCC-HHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCcccccccCCCCCCeEEEEEeCCchh
Q 000280 230 SDLELEF----KQNEN-VFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDV 304 (1728)
Q Consensus 230 ~~l~~~~----~~~~~-~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v 304 (1728)
..++... ++... .......++..+. +.+..+|+|+..+...+... ..+.+-|..|||...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~~-------------~~~~~li~~t~~~~~l 142 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAME-DFRLDIVIGKGPSARSVRLD-------------LPPFTLVGATTRAGML 142 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHh-hhheeeeeccCccccceeec-------------CCCeEEEEecCCcccc
Confidence 2222110 00000 0112233444444 45666777776555444322 1234556677777544
Q ss_pred hccc-CCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHHhcCCchhHHHHHHHHh
Q 000280 305 LCND-MNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWNDSLERLR 383 (1728)
Q Consensus 305 ~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~~L~~~~~~~w~~~~~~l~ 383 (1728)
.... ......+.+++++.+|..+++.+.++.... .-.++.+..|++.|+|.|-.+..++..+ |..+. ...
T Consensus 143 ~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~-~~~ 213 (305)
T TIGR00635 143 TSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQ-VRG 213 (305)
T ss_pred CHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH-HcC
Confidence 3311 112356899999999999999998863221 2235677899999999997665554432 21110 000
Q ss_pred cccccccccchhhHHHHHHHhHhcCCchhHHHHHH-hhcccCCCCCcCHHHHHHHHHhcCcccCcccHHHHHHHHHHHHH
Q 000280 384 NSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFR-LCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAARNRVYTLVD 462 (1728)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~lsy~~L~~~~~k~~fl-~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~ 462 (1728)
... .. .+.-......+...|..++..+ +..+. ..+.++ +.++..+.+.... |. + .......++
T Consensus 214 ~~~-it-~~~v~~~l~~l~~~~~~l~~~~-~~~L~al~~~~~-~~~~~~~~ia~~l---g~--~-------~~~~~~~~e 277 (305)
T TIGR00635 214 QKI-IN-RDIALKALEMLMIDELGLDEID-RKLLSVLIEQFQ-GGPVGLKTLAAAL---GE--D-------ADTIEDVYE 277 (305)
T ss_pred CCC-cC-HHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHhC-CCcccHHHHHHHh---CC--C-------cchHHHhhh
Confidence 000 00 0000112222455677787764 55555 556665 4456665553322 11 1 112334467
Q ss_pred -HHHhccccccCCC
Q 000280 463 -NLKASSLLLDGDK 475 (1728)
Q Consensus 463 -~L~~~~ll~~~~~ 475 (1728)
.|++.+|++....
T Consensus 278 ~~Li~~~li~~~~~ 291 (305)
T TIGR00635 278 PYLLQIGFLQRTPR 291 (305)
T ss_pred HHHHHcCCcccCCc
Confidence 5999999975443
No 33
>PF05729 NACHT: NACHT domain
Probab=98.92 E-value=5.6e-09 Score=112.01 Aligned_cols=150 Identities=23% Similarity=0.285 Sum_probs=94.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCC----CeeEEEEECCCCCHH---HHHHHHHHHhhhhhccCCCHHHHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLF----DKVVFVEVTQTPDLQ---TIQNKLSSDLELEFKQNENVFQRAEKLR 250 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 250 (1728)
|++.|+|.+|+||||+++.++.+....... ..++|+..++..... .+...|..+...... .....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA------PIEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh------hhHHHHH
Confidence 589999999999999999999988765443 356677776554432 344444443322111 1111333
Q ss_pred HHHHcCCcEEEEEeCCCCccccccc--cCCCcccccccCC--CCCCeEEEEEeCCchh--hcccCCCccEEEccCCCHHH
Q 000280 251 QRLKNVKRVLVILDNIWKLLNLDAV--GIPFGDVKKERND--DRSRCTVLLTSRNRDV--LCNDMNSQKFFLIEVLSYEE 324 (1728)
Q Consensus 251 ~~l~~~~~~LlVlDdv~~~~~~~~l--~~~~~~~~~~~~~--~~~g~~ilvTtR~~~v--~~~~~~~~~~~~l~~L~~~e 324 (1728)
..+.+.++++||||++++...-... ...+......++. ...+++++||+|.... ..........+.+++|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 4445579999999999887431111 0000000111111 2468999999999876 22133444689999999999
Q ss_pred HHHHHHHHh
Q 000280 325 AWCLFEKIV 333 (1728)
Q Consensus 325 a~~Lf~~~~ 333 (1728)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998875
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.91 E-value=2.8e-08 Score=118.49 Aligned_cols=279 Identities=14% Similarity=0.090 Sum_probs=149.4
Q ss_pred cCccccccchHHHHHHHHHHHh-----cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHH
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLK-----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQN 226 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (1728)
|.....|+||++.++.+..++. ....+.+.|+|++|+|||++|+.+++..... ..++.... ......+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~-----~~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN-----IRITSGPA-LEKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC-----eEEEeccc-ccChHHHH
Confidence 3456789999999999887775 2345688999999999999999999987421 12222211 11111222
Q ss_pred HHHHHhhhhh----ccCCC-HHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCcccccccCCCCCCeEEEEEeCC
Q 000280 227 KLSSDLELEF----KQNEN-VFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRN 301 (1728)
Q Consensus 227 ~i~~~l~~~~----~~~~~-~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~ 301 (1728)
.++..++... ++... .....+.++..+. +.+..+|+|+..+...+... -...+-|..|+|.
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~~-------------l~~~~li~at~~~ 160 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRLD-------------LPPFTLIGATTRA 160 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceeec-------------CCCceEEeecCCc
Confidence 2333322110 00000 0111122333333 45555666655443322211 1224556667776
Q ss_pred chhhccc-CCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHHhcCCchhHHHHHH
Q 000280 302 RDVLCND-MNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWNDSLE 380 (1728)
Q Consensus 302 ~~v~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~~L~~~~~~~w~~~~~ 380 (1728)
..+.... ......+++++++.+|..+++.+.++... ..-.++++..|++.|+|.|-.+..+...+. .|....
T Consensus 161 ~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~- 233 (328)
T PRK00080 161 GLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG-VEIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK- 233 (328)
T ss_pred ccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc-
Confidence 5443310 11235789999999999999999886422 222356788999999999964444443321 121110
Q ss_pred HHhcccccccccchhhHHHHHHHhHhcCCchhHHHHHH-hhcccCCCCCcCHHHHHHHHHhcCcccCcccHHHHHHHHHH
Q 000280 381 RLRNSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFR-LCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAARNRVYT 459 (1728)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~~~l~lsy~~L~~~~~k~~fl-~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~ 459 (1728)
...... ...-......+...|..|++.+ +..+. ....|+.+ ++..+.+.... | .+..+ + ++
T Consensus 234 ---~~~~I~-~~~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~~~~~~-~~~~~~~a~~l---g--~~~~~---~----~~ 295 (328)
T PRK00080 234 ---GDGVIT-KEIADKALDMLGVDELGLDEMD-RKYLRTIIEKFGGG-PVGLDTLAAAL---G--EERDT---I----ED 295 (328)
T ss_pred ---CCCCCC-HHHHHHHHHHhCCCcCCCCHHH-HHHHHHHHHHcCCC-ceeHHHHHHHH---C--CCcch---H----HH
Confidence 000000 0011123344556677787774 56554 66677743 56666653322 1 11122 2 22
Q ss_pred HHH-HHHhccccccCCC
Q 000280 460 LVD-NLKASSLLLDGDK 475 (1728)
Q Consensus 460 ~l~-~L~~~~ll~~~~~ 475 (1728)
.++ .|++.+|++....
T Consensus 296 ~~e~~Li~~~li~~~~~ 312 (328)
T PRK00080 296 VYEPYLIQQGFIQRTPR 312 (328)
T ss_pred HhhHHHHHcCCcccCCc
Confidence 355 7889999975543
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=2e-09 Score=112.44 Aligned_cols=128 Identities=21% Similarity=0.257 Sum_probs=45.8
Q ss_pred CCCcceEEEecCcCccccCcccc-CCCcccEEEecCccCCCccccccccCCceeecCCCCCCccchHh-hccccccEEec
Q 000280 558 GMNELRVVHFTRTCFLSLPSSLV-CLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREI-GQLVQLRLLDL 635 (1728)
Q Consensus 558 ~l~~Lr~L~Ls~~~i~~lp~~i~-~L~~Lr~L~L~~~~i~~~~~i~~L~~L~~L~Ls~~~i~~LP~~i-~~L~~L~~L~L 635 (1728)
+...+|.|+|.++.|+.+. .++ .+.+|+.|+|++|.|+.++.+..|.+|++|++++|.|+.++..+ ..+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4456788888888877764 355 57778888888888887777777888888888888888776655 35778888888
Q ss_pred cCcccccccCc-cccccCcccceeccCCCccccccccCCCccchhhhcCCCCCCeEEE
Q 000280 636 RNCRRLQAIAP-NVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEI 692 (1728)
Q Consensus 636 ~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l 692 (1728)
++| .+..+.. ..++.+++|++|++.+|.+. ........-+..+++|+.||-
T Consensus 96 ~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~-----~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SNN-KISDLNELEPLSSLPKLRVLSLEGNPVC-----EKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGG-----GSTTHHHHHHHH-TT-SEETT
T ss_pred cCC-cCCChHHhHHHHcCCCcceeeccCCccc-----chhhHHHHHHHHcChhheeCC
Confidence 877 5655432 22556777777777776653 122333444566666766653
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=3.8e-09 Score=110.36 Aligned_cols=107 Identities=32% Similarity=0.494 Sum_probs=24.3
Q ss_pred CcccEEEecCccCCCccccc-cccCCceeecCCCCCCccchHhhccccccEEeccCcccccccCccccccCcccceeccC
Q 000280 583 ISLRTLSLEGCQVGDVAIVG-QLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMG 661 (1728)
Q Consensus 583 ~~Lr~L~L~~~~i~~~~~i~-~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~ 661 (1728)
.++|.|+|++|.|+.++.++ .+.+|+.|||++|.|+.++ .+..|++|++|++++| .++.++......+++|++|+++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECc
Confidence 34455555555544444444 3445555555555544443 3444555555555554 3444433211234455555555
Q ss_pred CCccccccccCCCccchhhhcCCCCCCeEEEEecccc
Q 000280 662 DSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDAR 698 (1728)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 698 (1728)
+|.+. +-..+..|+.+++|+.|++.+|.+.
T Consensus 97 ~N~I~-------~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 97 NNKIS-------DLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TS----------SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCcCC-------ChHHhHHHHcCCCcceeeccCCccc
Confidence 44442 1222344444455555555444443
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.76 E-value=1.7e-09 Score=130.15 Aligned_cols=137 Identities=20% Similarity=0.212 Sum_probs=90.7
Q ss_pred hHhcCCCcceEEEecCcCcc-----ccCccccCCCcccEEEecCccCCC--------ccccccccCCceeecCCCCCC-c
Q 000280 554 LFFEGMNELRVVHFTRTCFL-----SLPSSLVCLISLRTLSLEGCQVGD--------VAIVGQLKKLEILSFRNSDIQ-Q 619 (1728)
Q Consensus 554 ~~f~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~--------~~~i~~L~~L~~L~Ls~~~i~-~ 619 (1728)
.+|..+..|++|+++++.++ .++..+...+.|++|+++++.+.. +..+.++.+|++|++++|.+. .
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 45567777888888888773 356667777778888888877652 245667778888888888776 4
Q ss_pred cchHhhcccc---ccEEeccCcccccc-----cCccccccC-cccceeccCCCccccccccCCCccchhhhcCCCCCCeE
Q 000280 620 LPREIGQLVQ---LRLLDLRNCRRLQA-----IAPNVISKL-SRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTL 690 (1728)
Q Consensus 620 LP~~i~~L~~---L~~L~L~~~~~l~~-----lp~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 690 (1728)
.+..+..+.+ |++|++++| .+.. +... +..+ ++|++|++++|.+.... .......+..+++|++|
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~----~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS----CEALAKALRANRDLKEL 170 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH----HHHHHHHHHhCCCcCEE
Confidence 5556666665 888888887 3432 2122 4555 77888888887764110 11234455666778887
Q ss_pred EEEecc
Q 000280 691 EIHIRD 696 (1728)
Q Consensus 691 ~l~~~~ 696 (1728)
++..+.
T Consensus 171 ~l~~n~ 176 (319)
T cd00116 171 NLANNG 176 (319)
T ss_pred ECcCCC
Confidence 776654
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.73 E-value=8.2e-10 Score=128.01 Aligned_cols=184 Identities=22% Similarity=0.368 Sum_probs=139.2
Q ss_pred EEEEcCCCCCCCCCCCC-CCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEecCc
Q 000280 515 IAISLPNRDIDELPERL-ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGC 593 (1728)
Q Consensus 515 ~~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~ 593 (1728)
....++.|.+.++|... .|--|.++.+..| .+..+|..+ ..+..|.+|||+.|.+..+|..++.| -|++|-+++|
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n--~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHN--CIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhc--cceecchhh-hhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecC
Confidence 34456667777776543 3556667777766 455566655 67888888888888888888888776 4888888888
Q ss_pred cCCC-ccccccccCCceeecCCCCCCccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCccccccccC
Q 000280 594 QVGD-VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEG 672 (1728)
Q Consensus 594 ~i~~-~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~ 672 (1728)
+++. |..|+.+.+|..||.+.|.+..+|..++.|.+|+.|+++.| .+..+|.. +..| .|..|+++.|.+
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfScNki------- 223 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSCNKI------- 223 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecccCce-------
Confidence 8875 68888888888888888888888888888888888888888 67888887 6644 478888888776
Q ss_pred CCccchhhhcCCCCCCeEEEEecccccCchhh-hccccceeEE
Q 000280 673 GSNASLVELKGLSKLTTLEIHIRDARIMPQDL-ISMKLEIFRM 714 (1728)
Q Consensus 673 ~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~~ 714 (1728)
...+..+.+|++|++|-+.+|.++.-|..+ ...+...+++
T Consensus 224 --s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKy 264 (722)
T KOG0532|consen 224 --SYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKY 264 (722)
T ss_pred --eecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeee
Confidence 456778888888998888888888888777 3344444433
No 39
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.73 E-value=7.4e-07 Score=100.96 Aligned_cols=256 Identities=16% Similarity=0.213 Sum_probs=147.7
Q ss_pred CccccccchHHHHH---HHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCC-HHHHHHHH
Q 000280 153 TAYEQFDSRMKIFQ---NIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD-LQTIQNKL 228 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~---~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 228 (1728)
.....++|.+..+. -|..++....+....+||++|+||||||+.++.... .. |..++...+ ++++. ++
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~-----f~~~sAv~~gvkdlr-~i 92 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AA-----FEALSAVTSGVKDLR-EI 92 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--Cc-----eEEeccccccHHHHH-HH
Confidence 34556777766542 355666677888889999999999999999999763 22 444444433 33332 22
Q ss_pred HHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCcccccccCCCCCCeEEEE--EeCCchh
Q 000280 229 SSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLL--TSRNRDV 304 (1728)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~g~~ilv--TtR~~~v 304 (1728)
++ +-++....+++.+|++|.|+.- .+-+.+ +|. -..|..|+| ||.++..
T Consensus 93 ~e-----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~-------vE~G~iilIGATTENPsF 145 (436)
T COG2256 93 IE-----------------EARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPH-------VENGTIILIGATTENPSF 145 (436)
T ss_pred HH-----------------HHHHHHhcCCceEEEEehhhhcChhhhhhh---hhh-------hcCCeEEEEeccCCCCCe
Confidence 22 2223333479999999999765 444555 333 456777776 6776643
Q ss_pred hcc--cCCCccEEEccCCCHHHHHHHHHHHhCC-----CCCCC-chHHHHHHHHHHhCCChHHHHHHHHH---Hh-cCC-
Q 000280 305 LCN--DMNSQKFFLIEVLSYEEAWCLFEKIVGD-----SAKAS-DFRVIADEIVRRCGGLPVAIKTIANA---LK-NKR- 371 (1728)
Q Consensus 305 ~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~~~-----~~~~~-~~~~~~~~i~~~c~glPLai~~~a~~---L~-~~~- 371 (1728)
.-+ ......+|.+++|+.+|-.+++.+.+-+ ..... -.+++.+.|++.++|---++-...-. +. ...
T Consensus 146 ~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~ 225 (436)
T COG2256 146 ELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEV 225 (436)
T ss_pred eecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcc
Confidence 221 2345679999999999999999985521 11111 22456778889999976543332222 22 221
Q ss_pred -chh-HHHHHHHHhcccccccccchhhHHHHHHHhHhcCCchhHHHHHHhhcccCCCCC--cCHHHHHH-HHHhcCcccC
Q 000280 372 -LYV-WNDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFRLCALRKDGSP--IPIDDLMR-YGIGLGLFSN 446 (1728)
Q Consensus 372 -~~~-w~~~~~~l~~~~~~~~~~~~~~~~~~l~lsy~~L~~~~~k~~fl~~a~fp~~~~--i~~~~li~-~w~~~g~~~~ 446 (1728)
..+ .++.+++-.. ....-.+...++.++|.-|...=.++ ...+.++-++--|.+ +-.++|++ -|..-|+.++
T Consensus 226 ~~~~~l~~~l~~~~~-~~Dk~gD~hYdliSA~hKSvRGSD~d--AALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP 302 (436)
T COG2256 226 LILELLEEILQRRSA-RFDKDGDAHYDLISALHKSVRGSDPD--AALYYLARMIEAGEDPLYIARRLVRIASEDIGLADP 302 (436)
T ss_pred cCHHHHHHHHhhhhh-ccCCCcchHHHHHHHHHHhhccCCcC--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCCh
Confidence 111 3333332111 11111223346888999999887766 444444445543332 22234443 3555555543
No 40
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.72 E-value=1.4e-06 Score=108.12 Aligned_cols=206 Identities=15% Similarity=0.175 Sum_probs=121.7
Q ss_pred ccccchHHHHHHHHHHHhc----CC-ceEEEEEcCCcchHHHHHHHHHHHHHhc---cCCC--eeEEEEECCCCCHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLKD----TN-VGMIGVYGVNGVGKTTLVKQIAMQVIED---KLFD--KVVFVEVTQTPDLQTIQ 225 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~----~~-~~~i~I~G~gG~GKTtLa~~~~~~~~~~---~~f~--~~~wv~~~~~~~~~~~~ 225 (1728)
..+.||++++++|...|.+ .+ ..++.|+|++|+|||+.++.|.++.+.. .... .+++|++..-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4578999999999988872 23 3567899999999999999999877432 1222 36788877777888899
Q ss_pred HHHHHHhhhhhc-cCCCHHHHHHHHHHHHHc--CCcEEEEEeCCCCccc--cccccCCCcccccccCCCCCCeEEEE--E
Q 000280 226 NKLSSDLELEFK-QNENVFQRAEKLRQRLKN--VKRVLVILDNIWKLLN--LDAVGIPFGDVKKERNDDRSRCTVLL--T 298 (1728)
Q Consensus 226 ~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~g~~ilv--T 298 (1728)
..|+.++....+ ......+...++...+.. ....+||||+|+.... -+.+...+.+ ....+++|+| +
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~------~~~s~SKLiLIGI 908 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW------PTKINSKLVLIAI 908 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH------hhccCCeEEEEEe
Confidence 999988844332 122333445555555532 2345899999986531 0111110110 0123445443 3
Q ss_pred eCCchhhcc-------cCCCccEEEccCCCHHHHHHHHHHHhCCC---CCCCchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 000280 299 SRNRDVLCN-------DMNSQKFFLIEVLSYEEAWCLFEKIVGDS---AKASDFRVIADEIVRRCGGLPVAIKTIANALK 368 (1728)
Q Consensus 299 tR~~~v~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~---~~~~~~~~~~~~i~~~c~glPLai~~~a~~L~ 368 (1728)
|........ .++ ...+..++++.+|-.+++..++... .....++-+|+.++..-|-.=.||.++-.+..
T Consensus 909 SNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 909 SNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred cCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 432221110 121 2346779999999999999988531 22222333333333334444566665555443
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=1.1e-09 Score=127.03 Aligned_cols=163 Identities=21% Similarity=0.323 Sum_probs=140.3
Q ss_pred EEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEecCccCCC-ccccccccCCceeecCCC
Q 000280 537 SLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD-VAIVGQLKKLEILSFRNS 615 (1728)
Q Consensus 537 r~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~-~~~i~~L~~L~~L~Ls~~ 615 (1728)
....++.| +...+|..+ ..+-.|..|.|..|.+..+|..+++|..|.||+|+.|+++. |..++.| -|++|-+++|
T Consensus 78 ~~aDlsrN--R~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRN--RFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhhcccc--ccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecC
Confidence 34555555 667788775 66788999999999999999999999999999999999986 5666654 4999999999
Q ss_pred CCCccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCccccccccCCCccchhhhcCCCCCCeEEEEec
Q 000280 616 DIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIR 695 (1728)
Q Consensus 616 ~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 695 (1728)
+++.+|.+|+-+.+|.+||.+.| .+..+|+. ++.|.+|+.|.+..|.+ ...+.++..|+ |..|++++|
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l---------~~lp~El~~Lp-Li~lDfScN 221 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHL---------EDLPEELCSLP-LIRLDFSCN 221 (722)
T ss_pred ccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhh---------hhCCHHHhCCc-eeeeecccC
Confidence 99999999999999999999999 79999998 99999999999988877 45678888665 889999999
Q ss_pred ccccCchhh-hccccceeEEE
Q 000280 696 DARIMPQDL-ISMKLEIFRMF 715 (1728)
Q Consensus 696 ~~~~~~~~~-~~~~L~~l~~~ 715 (1728)
.+..+|-.+ .+..|+.+.+.
T Consensus 222 kis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 222 KISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred ceeecchhhhhhhhheeeeec
Confidence 999999887 67777777653
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=3.7e-09 Score=112.53 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=115.0
Q ss_pred CcceEEEecCcCccccCccccCCCcccEEEecCccCCCccccccccCCceeecCCCCCCccchHhhccccccEEeccCcc
Q 000280 560 NELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCR 639 (1728)
Q Consensus 560 ~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~ 639 (1728)
+.|..||||+|.|+.+-++..-+..+|+|++++|.|..+.++..|++|+.||||+|.+.++-..-.+|-|..+|.|++|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N- 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN- 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-
Confidence 5688899999999999999988999999999999999888899999999999999988887766678889999999999
Q ss_pred cccccCccccccCcccceeccCCCccccccccCCCccchhhhcCCCCCCeEEEEecccccCchh
Q 000280 640 RLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQD 703 (1728)
Q Consensus 640 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~ 703 (1728)
.+..+.. +++|-+|..|++.+|.+. .-.....+|+|+.|+.|.+..|.+..++..
T Consensus 363 ~iE~LSG--L~KLYSLvnLDl~~N~Ie-------~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 363 KIETLSG--LRKLYSLVNLDLSSNQIE-------ELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hHhhhhh--hHhhhhheeccccccchh-------hHHHhcccccccHHHHHhhcCCCccccchH
Confidence 6887744 899999999999998875 234466789999999999988877766543
No 43
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.56 E-value=2.4e-08 Score=120.17 Aligned_cols=135 Identities=21% Similarity=0.215 Sum_probs=77.4
Q ss_pred hcCCCcceEEEecCcCccc-------cCccccCCCcccEEEecCccCCC--ccccccccC---CceeecCCCCCC-----
Q 000280 556 FEGMNELRVVHFTRTCFLS-------LPSSLVCLISLRTLSLEGCQVGD--VAIVGQLKK---LEILSFRNSDIQ----- 618 (1728)
Q Consensus 556 f~~l~~Lr~L~Ls~~~i~~-------lp~~i~~L~~Lr~L~L~~~~i~~--~~~i~~L~~---L~~L~Ls~~~i~----- 618 (1728)
+...+.|+.|+++++.+.. ++..+..+.+|++|++++|.+.. +..+..+.+ |++|++++|.+.
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~ 126 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR 126 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH
Confidence 3455667777777665542 23445666777777777777652 344444444 777777777665
Q ss_pred ccchHhhcc-ccccEEeccCccccc-----ccCccccccCcccceeccCCCccccccccCCCccchhhhcCCCCCCeEEE
Q 000280 619 QLPREIGQL-VQLRLLDLRNCRRLQ-----AIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEI 692 (1728)
Q Consensus 619 ~LP~~i~~L-~~L~~L~L~~~~~l~-----~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l 692 (1728)
.++..+..+ .+|+.|++++| .+. .++.. +..+.+|++|++++|.+..+. .......+..+++|+.|++
T Consensus 127 ~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~----~~~l~~~l~~~~~L~~L~L 200 (319)
T cd00116 127 LLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKA-LRANRDLKELNLANNGIGDAG----IRALAEGLKANCNLEVLDL 200 (319)
T ss_pred HHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHH-HHhCCCcCEEECcCCCCchHH----HHHHHHHHHhCCCCCEEec
Confidence 233445566 77777777777 343 22222 455667777777776653100 0112334455567777777
Q ss_pred Eecc
Q 000280 693 HIRD 696 (1728)
Q Consensus 693 ~~~~ 696 (1728)
+.+.
T Consensus 201 ~~n~ 204 (319)
T cd00116 201 NNNG 204 (319)
T ss_pred cCCc
Confidence 6554
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.56 E-value=5.6e-07 Score=110.66 Aligned_cols=179 Identities=18% Similarity=0.235 Sum_probs=110.3
Q ss_pred CccccccchHHHHHH---HHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCC-HHHHHHHH
Q 000280 153 TAYEQFDSRMKIFQN---IMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD-LQTIQNKL 228 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~---l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 228 (1728)
.....|+|++..+.. +.+++.....+.+.++|++|+||||+|+.+++... .. |+.++.... ..++ +++
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~--~~-----~~~l~a~~~~~~~i-r~i 80 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD--AP-----FEALSAVTSGVKDL-REV 80 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----EEEEecccccHHHH-HHH
Confidence 345678999988776 88888777778899999999999999999998763 22 333332211 1111 111
Q ss_pred HHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEE--EeCCch-
Q 000280 229 SSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLL--TSRNRD- 303 (1728)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilv--TtR~~~- 303 (1728)
. .........+++.+|++|+++... ..+.+...+ ..|..++| ||.+..
T Consensus 81 i-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l----------e~~~iilI~att~n~~~ 133 (413)
T PRK13342 81 I-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV----------EDGTITLIGATTENPSF 133 (413)
T ss_pred H-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh----------hcCcEEEEEeCCCChhh
Confidence 1 111222223588999999998763 333332222 12444444 344432
Q ss_pred -hhcccCCCccEEEccCCCHHHHHHHHHHHhCCC-CCC-CchHHHHHHHHHHhCCChHHHHHHHHH
Q 000280 304 -VLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDS-AKA-SDFRVIADEIVRRCGGLPVAIKTIANA 366 (1728)
Q Consensus 304 -v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~-~~~~~~~~~i~~~c~glPLai~~~a~~ 366 (1728)
+..........+.+.+++.++.+.++.+.+... ... .-.+++.+.|++.++|.+..+..+...
T Consensus 134 ~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 134 EVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred hccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 111112234689999999999999999876321 111 233567788999999999766554433
No 45
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=2.9e-06 Score=105.45 Aligned_cols=188 Identities=13% Similarity=0.170 Sum_probs=116.0
Q ss_pred cCccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhcc-------------------CCCeeE
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK-------------------LFDKVV 211 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~-------------------~f~~~~ 211 (1728)
|.....++|.+..++.|.+++..+.+ +.+.++|..|+||||+|+.+++...-.. .|..++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 34467789999999999999986554 5668999999999999999998773211 111233
Q ss_pred EEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc--cccccCCCcccccccCCC
Q 000280 212 FVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN--LDAVGIPFGDVKKERNDD 289 (1728)
Q Consensus 212 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~ 289 (1728)
+++......+.++. ++++ .+...-..++.-++|||+++.... ++.+...+.+ -
T Consensus 92 EIDAas~rgVDdIR-eLIe-----------------~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE-------P 146 (830)
T PRK07003 92 EMDAASNRGVDEMA-ALLE-----------------RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-------P 146 (830)
T ss_pred EecccccccHHHHH-HHHH-----------------HHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh-------c
Confidence 33322222221111 1111 111111124566899999998743 5555433333 3
Q ss_pred CCCeEEEEEeCCch-hhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh-HHHHHHHH
Q 000280 290 RSRCTVLLTSRNRD-VLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP-VAIKTIAN 365 (1728)
Q Consensus 290 ~~g~~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~a~ 365 (1728)
....++|+||++.. +..........|++..++.++..+.+.+.++.+.- .-.++..+.|++.++|.. -|+.++-.
T Consensus 147 P~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 147 PPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI-AFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred CCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34677777776653 32212333568999999999999999988753221 223566788999998866 45555333
No 46
>PRK06893 DNA replication initiation factor; Validated
Probab=98.49 E-value=8.4e-07 Score=99.50 Aligned_cols=156 Identities=13% Similarity=0.199 Sum_probs=96.2
Q ss_pred cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHH
Q 000280 174 DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRL 253 (1728)
Q Consensus 174 ~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 253 (1728)
+...+.+.++|+.|+|||+||+++++....+ ...+.|+++..... . ...+.+.+
T Consensus 36 ~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~~---~---------------------~~~~~~~~ 89 (229)
T PRK06893 36 DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQY---F---------------------SPAVLENL 89 (229)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhhh---h---------------------hHHHHhhc
Confidence 3344678999999999999999999987543 34567776532100 0 01122223
Q ss_pred HcCCcEEEEEeCCCCc---ccccc-ccCCCcccccccCCCCCCeEEEEEeCCc----------hhhcccCCCccEEEccC
Q 000280 254 KNVKRVLVILDNIWKL---LNLDA-VGIPFGDVKKERNDDRSRCTVLLTSRNR----------DVLCNDMNSQKFFLIEV 319 (1728)
Q Consensus 254 ~~~~~~LlVlDdv~~~---~~~~~-l~~~~~~~~~~~~~~~~g~~ilvTtR~~----------~v~~~~~~~~~~~~l~~ 319 (1728)
. +.-+|||||+|.. .+|+. +...+.. . ...|..+||+|.+. .+.+ .+.....+++++
T Consensus 90 ~--~~dlLilDDi~~~~~~~~~~~~l~~l~n~----~--~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~ 160 (229)
T PRK06893 90 E--QQDLVCLDDLQAVIGNEEWELAIFDLFNR----I--KEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLND 160 (229)
T ss_pred c--cCCEEEEeChhhhcCChHHHHHHHHHHHH----H--HHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCC
Confidence 2 3459999999974 33432 2111221 1 12345555544433 3333 344567899999
Q ss_pred CCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 000280 320 LSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIAN 365 (1728)
Q Consensus 320 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~ 365 (1728)
+++++.++++++.+.... ..--+++.+-|++++.|-.-++..+-.
T Consensus 161 pd~e~~~~iL~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 161 LTDEQKIIVLQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred CCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 999999999998884321 222357788899999887765554443
No 47
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.5e-05 Score=94.57 Aligned_cols=200 Identities=19% Similarity=0.218 Sum_probs=132.0
Q ss_pred cccchHHHHHHHHHHHh----cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHh
Q 000280 157 QFDSRMKIFQNIMEVLK----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDL 232 (1728)
Q Consensus 157 ~~~gR~~~~~~l~~~L~----~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 232 (1728)
.+.+|+.+++++...|. +....-+.|+|..|+|||+.++.+.++.+....=..+++|++....+..+++..|++++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 38899999999998887 33444599999999999999999999987543222389999999999999999999999
Q ss_pred hhhhccCCCHHHHHHHHHHHHHc-CCcEEEEEeCCCCccccc-----cccCCCcccccccCCCCCCeEEE--EEeCCchh
Q 000280 233 ELEFKQNENVFQRAEKLRQRLKN-VKRVLVILDNIWKLLNLD-----AVGIPFGDVKKERNDDRSRCTVL--LTSRNRDV 304 (1728)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~~~-----~l~~~~~~~~~~~~~~~~g~~il--vTtR~~~v 304 (1728)
+..........+....+.+.+.+ ++.+++|||+++....-. .+.. .+ ....++|+ ..+-+...
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r-~~--------~~~~~~v~vi~i~n~~~~ 168 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLR-AP--------GENKVKVSIIAVSNDDKF 168 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHh-hc--------cccceeEEEEEEeccHHH
Confidence 74333345666777777777763 588999999998763322 2211 11 11244443 33333322
Q ss_pred hcc-------cCCCccEEEccCCCHHHHHHHHHHHhC----CCCCCCchHHHHHHHHHHhC-CChHHHHHHHHH
Q 000280 305 LCN-------DMNSQKFFLIEVLSYEEAWCLFEKIVG----DSAKASDFRVIADEIVRRCG-GLPVAIKTIANA 366 (1728)
Q Consensus 305 ~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~-glPLai~~~a~~ 366 (1728)
... ..+ ...+..+|-+.+|-...+..++. +..-.++.-+.+..++..-+ -.=.||..+-++
T Consensus 169 ~~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 169 LDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred HHHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 221 122 34588999999999999998872 22223333333334444444 444555554433
No 48
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=8.7e-06 Score=100.35 Aligned_cols=184 Identities=11% Similarity=0.140 Sum_probs=112.0
Q ss_pred CccccccchHHHHHHHHHHHhcCC-ceEEEEEcCCcchHHHHHHHHHHHHHhcc-------------------CCCeeEE
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDK-------------------LFDKVVF 212 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~-~~~i~I~G~gG~GKTtLa~~~~~~~~~~~-------------------~f~~~~w 212 (1728)
.....++|.+...+.|..++..+. .+.+.++|+.|+||||+|+.+++...-.. .|..++.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 446678999999999999998665 45779999999999999999998763211 1111222
Q ss_pred EEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCC
Q 000280 213 VEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDR 290 (1728)
Q Consensus 213 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 290 (1728)
++.+....+.++. +++. .+...-..+++-++|+|+|+... ..+.+...+.. ..
T Consensus 92 IDAAs~~~VddIR-eli~-----------------~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-------PP 146 (702)
T PRK14960 92 IDAASRTKVEDTR-ELLD-----------------NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-------PP 146 (702)
T ss_pred ecccccCCHHHHH-HHHH-----------------HHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-------CC
Confidence 2222221221111 1111 11111112566799999998763 33444332322 23
Q ss_pred CCeEEEEEeCCc-hhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000280 291 SRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1728)
Q Consensus 291 ~g~~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1728)
.+.++|++|.+. .+..........+++.+++.++..+.+.+.+..... .-..+....|++.++|-+..+..
T Consensus 147 ~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI-~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 147 EHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI-AADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred CCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 455777766553 222212334578999999999999999887743221 22245677899999998854443
No 49
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.40 E-value=4e-07 Score=104.10 Aligned_cols=289 Identities=24% Similarity=0.272 Sum_probs=184.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCC-CeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHc
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF-DKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1728)
.+.+.++|.|||||||++-+++. .+ .-| +.+.++....-.|...+.-.++..++....+.++ -+..+..++.
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~---~~~~~~~~~~- 86 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDS---AVDTLVRRIG- 86 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccchH---HHHHHHHHHh-
Confidence 47899999999999999999999 43 335 6677787777778888887777778776542222 2334455555
Q ss_pred CCcEEEEEeCCCCcccc-ccccCCCcccccccCCCCCCeEEEEEeCCchhhcccCCCccEEEccCCCHH-HHHHHHHHHh
Q 000280 256 VKRVLVILDNIWKLLNL-DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFFLIEVLSYE-EAWCLFEKIV 333 (1728)
Q Consensus 256 ~~~~LlVlDdv~~~~~~-~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~ 333 (1728)
++|.++|+||..+..+- ......+-. +...-.|+.|+|.... ........+++|+.- ++.++|...+
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~-------~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra 155 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLG-------ACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRA 155 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHc-------cchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHH
Confidence 69999999998765221 111111111 3334468889988753 335567778888776 7999998776
Q ss_pred CC----CCCCCchHHHHHHHHHHhCCChHHHHHHHHHHhcCCchh----HHHHHHHHhcccccccccchhhHHHHHHHhH
Q 000280 334 GD----SAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYV----WNDSLERLRNSTSRQIHGMEENVYSSIELSY 405 (1728)
Q Consensus 334 ~~----~~~~~~~~~~~~~i~~~c~glPLai~~~a~~L~~~~~~~----w~~~~~~l~~~~~~~~~~~~~~~~~~l~lsy 405 (1728)
.. -.-.........+|.++..|.|++|..+++..+.-...+ ..+-...+.... ....-........+.+||
T Consensus 156 ~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~-r~a~~~~qtl~asl~ws~ 234 (414)
T COG3903 156 VLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGA-RLAVLRQQTLRASLDWSY 234 (414)
T ss_pred HHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhccc-ccchhHHHhccchhhhhh
Confidence 31 111223345677999999999999999999988765443 222122222111 111112334678999999
Q ss_pred hcCCchhHHHHHHhhcccCCCCCcCHHHHHHHHHhcCcccCcccHHHHHHHHHHHHHHHHhccccccCCC---CcEEEcH
Q 000280 406 SFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAARNRVYTLVDNLKASSLLLDGDK---DEVKLHD 482 (1728)
Q Consensus 406 ~~L~~~~~k~~fl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~---~~~~mHd 482 (1728)
.-|...+ +..|..++.|...+... ...|.+.|-.. ...+-.+...+..+++.+++.-.+. ..|+.-+
T Consensus 235 ~lLtgwe-~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~e 304 (414)
T COG3903 235 ALLTGWE-RALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLE 304 (414)
T ss_pred HhhhhHH-HHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHH
Confidence 9999984 99999999998655543 23344433221 0111222334566788888743322 5677778
Q ss_pred HHHHHHHHHhcc
Q 000280 483 IIYAVAVSIARD 494 (1728)
Q Consensus 483 lv~~~a~~~~~~ 494 (1728)
-+|.|+..+..+
T Consensus 305 T~r~YalaeL~r 316 (414)
T COG3903 305 TGRRYALAELHR 316 (414)
T ss_pred HHHHHHHHHHHh
Confidence 888888777655
No 50
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=5.9e-07 Score=90.77 Aligned_cols=120 Identities=21% Similarity=0.271 Sum_probs=81.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCC
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (1728)
+++.|.|+.|+||||++++++++.. ....++|++..+......... +..+.+.+... .+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~-----------------~~~~~~~~~~~-~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP-----------------DLLEYFLELIK-PG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh-----------------hhHHHHHHhhc-cC
Confidence 6899999999999999999998874 346678887665433110000 01222333322 47
Q ss_pred cEEEEEeCCCCccccccccCCCcccccccCCCCCCeEEEEEeCCchhhcc-----cCCCccEEEccCCCHHHH
Q 000280 258 RVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN-----DMNSQKFFLIEVLSYEEA 325 (1728)
Q Consensus 258 ~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~-----~~~~~~~~~l~~L~~~ea 325 (1728)
+.+++||+|....+|......+-+ .....+|++|+.+...... ..+....+++.||+..|-
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d-------~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVD-------NGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHH-------hccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 889999999999888776554544 4456899999988766532 233456789999998773
No 51
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=4.1e-06 Score=106.37 Aligned_cols=186 Identities=13% Similarity=0.192 Sum_probs=113.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCceE-EEEEcCCcchHHHHHHHHHHHHHhccC-------------------CCeeEE
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVGM-IGVYGVNGVGKTTLVKQIAMQVIEDKL-------------------FDKVVF 212 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~~-i~I~G~gG~GKTtLa~~~~~~~~~~~~-------------------f~~~~w 212 (1728)
.....++|.+..++.|.+++..+++.. +.++|+.|+||||+|+.+++...-... |.-+++
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 345678999999999999998766554 589999999999999999998742211 111122
Q ss_pred EEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCcccccccCCCC
Q 000280 213 VEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDR 290 (1728)
Q Consensus 213 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~ 290 (1728)
++......+..+ ++|.. .+..+-..+++-++|||+++.. ...+.+...+-. -.
T Consensus 93 idAas~~kVDdI-ReLie-----------------~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-------PP 147 (944)
T PRK14949 93 VDAASRTKVDDT-RELLD-----------------NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-------PP 147 (944)
T ss_pred eccccccCHHHH-HHHHH-----------------HHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-------cC
Confidence 222111111111 11111 1111112357789999999877 334444333322 23
Q ss_pred CCeEEEEEe-CCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHH
Q 000280 291 SRCTVLLTS-RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 364 (1728)
Q Consensus 291 ~g~~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a 364 (1728)
...++|++| ....+..........|++.+++.++..+.+.+.+.... ..-..+.+..|++.++|.|-.+..+.
T Consensus 148 ~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 148 EHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 445665554 44444332233357899999999999999988774321 12235667889999999886444443
No 52
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.4e-05 Score=96.44 Aligned_cols=180 Identities=12% Similarity=0.151 Sum_probs=110.0
Q ss_pred CccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhccCC-------------------CeeEE
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLF-------------------DKVVF 212 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f-------------------~~~~w 212 (1728)
.....++|.+..++.+..++..+.. +.+.++|+.|+||||+|+.+++...-...+ ..+.+
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~ 92 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIE 92 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEE
Confidence 3456789999999999999886554 567899999999999999999876311111 11122
Q ss_pred EEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCccccccc
Q 000280 213 VEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKER 286 (1728)
Q Consensus 213 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~ 286 (1728)
++.+....+ +.+..+.+.+. .+++-++|+|+++... .++.+...+.+
T Consensus 93 ~~~~~~~~v----------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe----- 145 (363)
T PRK14961 93 IDAASRTKV----------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE----- 145 (363)
T ss_pred ecccccCCH----------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc-----
Confidence 211111111 11222222221 2356699999998774 34444333333
Q ss_pred CCCCCCeEEEEEeCCc-hhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000280 287 NDDRSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1728)
Q Consensus 287 ~~~~~g~~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1728)
.....++|++|.+. .+..........+++.+++.++..+.+...+.... ..-.++.+..|++.++|.|-.+..
T Consensus 146 --~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~~i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 146 --PPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-IDTDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred --CCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 33456667666443 33221223346899999999999988887663211 112245678899999998854433
No 53
>PRK04195 replication factor C large subunit; Provisional
Probab=98.35 E-value=2.8e-05 Score=97.74 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=112.8
Q ss_pred cCccccccchHHHHHHHHHHHhc----CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHH
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKD----TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNK 227 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~----~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (1728)
|.....++|+++.++.+.+|+.. ...+.+.|+|++|+||||+|+.++++.. |+ ++-++.++..+... ...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~-i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADV-IER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHH-HHH
Confidence 44466789999999999999873 2267899999999999999999999862 33 33445544333222 222
Q ss_pred HHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc------cccccCCCcccccccCCCCCCeEEEEEeCC
Q 000280 228 LSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN------LDAVGIPFGDVKKERNDDRSRCTVLLTSRN 301 (1728)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~ 301 (1728)
++....... .+...++-+||+|+++.... +..+...+. ..+..||+|+.+
T Consensus 84 ~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~---------~~~~~iIli~n~ 139 (482)
T PRK04195 84 VAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK---------KAKQPIILTAND 139 (482)
T ss_pred HHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH---------cCCCCEEEeccC
Confidence 222211100 01112678999999987632 222222111 233456666644
Q ss_pred chhhc--ccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 000280 302 RDVLC--NDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALK 368 (1728)
Q Consensus 302 ~~v~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~~L~ 368 (1728)
..-.. ........+.+.+++.++....+.+.+...... -..++...|++.++|-.-.+......+.
T Consensus 140 ~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 140 PYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE-CDDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred ccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 32111 012235678999999999999888877321111 1256788999999998766554444343
No 54
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=2.1e-05 Score=97.67 Aligned_cols=190 Identities=16% Similarity=0.184 Sum_probs=111.1
Q ss_pred CccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECC-------CCCHHHH
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ-------TPDLQTI 224 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-------~~~~~~~ 224 (1728)
.....++|.+..++.|..++..... +.+.++|+.|+||||+|+.+++.......+....|.+.+. .+++..+
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el 90 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEI 90 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEe
Confidence 3456789999999999999886654 4569999999999999999999875322222222221110 0000000
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEEE
Q 000280 225 QNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLT 298 (1728)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilvT 298 (1728)
.. ..... .+.+..+.+.+. .+++-++|+|+++... .++.+...+.. ....+.+|++
T Consensus 91 --------~~--~~~~~-vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe-------p~~~t~~Il~ 152 (504)
T PRK14963 91 --------DA--ASNNS-VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE-------PPEHVIFILA 152 (504)
T ss_pred --------cc--cccCC-HHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh-------CCCCEEEEEE
Confidence 00 00001 111222222221 2467799999998652 34444333332 2344555555
Q ss_pred eC-CchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000280 299 SR-NRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 361 (1728)
Q Consensus 299 tR-~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 361 (1728)
|. ...+..........+++.+++.++....+.+.+..... .-.++.+..|++.++|.+--+.
T Consensus 153 t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi-~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 153 TTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR-EAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred cCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 54 33333222333568999999999999999987732111 1135678899999999985443
No 55
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.33 E-value=1.9e-05 Score=104.65 Aligned_cols=311 Identities=15% Similarity=0.169 Sum_probs=172.6
Q ss_pred ccchHHHHHHHHHHHh---cCCceEEEEEcCCcchHHHHHHHHHHHHHhc-cCCCeeEEEEECCCCC---HHHHHHHHHH
Q 000280 158 FDSRMKIFQNIMEVLK---DTNVGMIGVYGVNGVGKTTLVKQIAMQVIED-KLFDKVVFVEVTQTPD---LQTIQNKLSS 230 (1728)
Q Consensus 158 ~~gR~~~~~~l~~~L~---~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~---~~~~~~~i~~ 230 (1728)
++||+.+++.|...+. .....++.|.|..|+|||+++++|.+....+ +.|-.-.+-....+.. ..+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6899999999999987 3456799999999999999999999988643 1111111111222222 2222333333
Q ss_pred Hh-------------------hhhhcc----------------------CCCHHHH-----HHHHHHHHHcCCcEEEEEe
Q 000280 231 DL-------------------ELEFKQ----------------------NENVFQR-----AEKLRQRLKNVKRVLVILD 264 (1728)
Q Consensus 231 ~l-------------------~~~~~~----------------------~~~~~~~-----~~~l~~~l~~~~~~LlVlD 264 (1728)
++ +..... +.....+ ...+.....+.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 111000 0011111 1223333345679999999
Q ss_pred CCCCccc--cccccCCCcccccccCCCCCCeEEEEEeCCc-hhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCc
Q 000280 265 NIWKLLN--LDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASD 341 (1728)
Q Consensus 265 dv~~~~~--~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 341 (1728)
|+.-.+. ++-+........ ......+..-.+.|.+.. ............+.|.||+..+...+.....+.... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~-~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~--~ 238 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIA-IGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL--L 238 (849)
T ss_pred cccccChhHHHHHHHHHHhcc-hhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc--c
Confidence 9854321 111110000000 000000011122333332 111112344678999999999999999999875332 2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHhcCCc------h-hHHHHHHHHhcccccccccchhhHHHHHHHhHhcCCchhHH
Q 000280 342 FRVIADEIVRRCGGLPVAIKTIANALKNKRL------Y-VWNDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEEK 414 (1728)
Q Consensus 342 ~~~~~~~i~~~c~glPLai~~~a~~L~~~~~------~-~w~~~~~~l~~~~~~~~~~~~~~~~~~l~lsy~~L~~~~~k 414 (1728)
..+....|.++..|+|+-+..+-+.+..... . .|..=..++.. .+..++ +-..+..-.+.||+. .+
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~-vv~~l~~rl~kL~~~-t~ 311 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDA-VVEFLAARLQKLPGT-TR 311 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHH-HHHHHHHHHhcCCHH-HH
Confidence 3466789999999999999999998876421 1 15322222211 111222 555688888999998 59
Q ss_pred HHHHhhcccCCCCCcCHHHHHHHHHhcCcccCcccHHHHHHHHHHHHHHHHhccccccC-----CC--Cc--E-EEcHHH
Q 000280 415 SMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAARNRVYTLVDNLKASSLLLDG-----DK--DE--V-KLHDII 484 (1728)
Q Consensus 415 ~~fl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~-----~~--~~--~-~mHdlv 484 (1728)
..+...|++. ..|+.+.|...+... ....+....+.|.....+-.+ .. .. | -.||.|
T Consensus 312 ~Vl~~AA~iG--~~F~l~~La~l~~~~-----------~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 312 EVLKAAACIG--NRFDLDTLAALAEDS-----------PALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHhC--ccCCHHHHHHHHhhc-----------hHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 9999999997 556666676655321 122223344444444444211 11 11 2 478888
Q ss_pred HHHHHHH
Q 000280 485 YAVAVSI 491 (1728)
Q Consensus 485 ~~~a~~~ 491 (1728)
++.|-..
T Consensus 379 qqaaY~~ 385 (849)
T COG3899 379 QQAAYNL 385 (849)
T ss_pred HHHHhcc
Confidence 8887544
No 56
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.31 E-value=1.1e-07 Score=101.55 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=78.9
Q ss_pred CCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEecCccCCCccc-cccccCCceee
Q 000280 533 CPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAI-VGQLKKLEILS 611 (1728)
Q Consensus 533 ~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~~~~-i~~L~~L~~L~ 611 (1728)
+..|.++.++.| .+..+.++. +-.+.+|+|++|+|.+..+-. +..|++|+.|||++|.++.+.. -.+|-|.+.|.
T Consensus 283 Wq~LtelDLS~N--~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGN--LITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhcccccc--chhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 344555566555 444444332 445667777777777665544 6667777777777777665432 24566677777
Q ss_pred cCCCCCCccchHhhccccccEEeccCcccccccCc-cccccCcccceeccCCCcc
Q 000280 612 FRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAP-NVISKLSRLEELYMGDSFS 665 (1728)
Q Consensus 612 Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~ 665 (1728)
|++|.|..| .++++|++|..||+++| ++..+.. ..||+|+-|++|.+.+|.+
T Consensus 359 La~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCc
Confidence 777766665 35677777777777777 4554421 2277777777777776655
No 57
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.31 E-value=7.5e-06 Score=99.14 Aligned_cols=203 Identities=13% Similarity=0.125 Sum_probs=114.1
Q ss_pred CccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCC-eeEEEEECCCCCH-HHHH-H--H
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD-KVVFVEVTQTPDL-QTIQ-N--K 227 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~-~~~~-~--~ 227 (1728)
.....|+|++..++.+.+++..+..+.+.++|+.|+||||+|+.+++..... .++ ..+++++++..+. .... . .
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCcc
Confidence 3456788999999999999987766678999999999999999999887422 222 2455554432110 0000 0 0
Q ss_pred HHHHhhhhhccCCCHHHHHHHHHHHHHc-----CCcEEEEEeCCCCccc--cccccCCCcccccccCCCCCCeEEEEEeC
Q 000280 228 LSSDLELEFKQNENVFQRAEKLRQRLKN-----VKRVLVILDNIWKLLN--LDAVGIPFGDVKKERNDDRSRCTVLLTSR 300 (1728)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-----~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~g~~ilvTtR 300 (1728)
....++..........+....+.+.... ..+-+||+||++.... .+.+...+.. ....+++|+||.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~-------~~~~~~~Il~~~ 163 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ-------YSRTCRFIIATR 163 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh-------ccCCCeEEEEeC
Confidence 0000000000001111222222222211 2455899999976531 2222221211 234467777775
Q ss_pred Cc-hhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHH
Q 000280 301 NR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 364 (1728)
Q Consensus 301 ~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a 364 (1728)
.. .+..........+.+.+++.++...++.+.+..... .-..+.++.+++.++|.+-.+....
T Consensus 164 ~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~~~~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 164 QPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-DYDDDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred ChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 43 222211223457889999999999999887642211 1235678889999999876554433
No 58
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.30 E-value=6.5e-06 Score=90.88 Aligned_cols=173 Identities=17% Similarity=0.264 Sum_probs=110.6
Q ss_pred ccccchHHHHH---HHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHh
Q 000280 156 EQFDSRMKIFQ---NIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDL 232 (1728)
Q Consensus 156 ~~~~gR~~~~~---~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 232 (1728)
..+||.+..+. -|..+++.+..+.+.+||++|+||||||+.++...+... +.||..+....-..-.+.|.++-
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHH
Confidence 34555554433 245556677889999999999999999999999875332 56888876654333334444332
Q ss_pred hhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCcccccccCCCCCCeEEEE--EeCCchhhcc-
Q 000280 233 ELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLL--TSRNRDVLCN- 307 (1728)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~g~~ilv--TtR~~~v~~~- 307 (1728)
. .. ..+. ++|.+|.+|.|..- .+-+.+ +|. ..+|..++| ||.++..--+
T Consensus 214 q--------------~~-~~l~-krkTilFiDEiHRFNksQQD~f---LP~-------VE~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 214 Q--------------NE-KSLT-KRKTILFIDEIHRFNKSQQDTF---LPH-------VENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred H--------------HH-Hhhh-cceeEEEeHHhhhhhhhhhhcc---cce-------eccCceEEEecccCCCccchhH
Confidence 1 11 1222 58999999999753 444444 444 567777766 7776643211
Q ss_pred -cCCCccEEEccCCCHHHHHHHHHHHh---CC------CCCCC---chHHHHHHHHHHhCCChH
Q 000280 308 -DMNSQKFFLIEVLSYEEAWCLFEKIV---GD------SAKAS---DFRVIADEIVRRCGGLPV 358 (1728)
Q Consensus 308 -~~~~~~~~~l~~L~~~ea~~Lf~~~~---~~------~~~~~---~~~~~~~~i~~~c~glPL 358 (1728)
......++.|+.|+.++-..++.+.. ++ ..+++ -...+.+-++..|.|-.-
T Consensus 268 aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 268 ALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 34456799999999999998887743 22 11221 124567778888888764
No 59
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=6.3e-07 Score=111.04 Aligned_cols=166 Identities=24% Similarity=0.301 Sum_probs=76.1
Q ss_pred CCeEEEEEeccCCCCCcCChhHhcCCC-cceEEEecCcCccccCccccCCCcccEEEecCccCCCc-cccccccCCceee
Q 000280 534 PKLSLFLLFAKYDSSLKIPDLFFEGMN-ELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDV-AIVGQLKKLEILS 611 (1728)
Q Consensus 534 ~~Lr~L~l~~~~~~~~~i~~~~f~~l~-~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~~-~~i~~L~~L~~L~ 611 (1728)
+.+..|.+..+ ....++... ..++ +|+.|++++|.+..+|..++.+++|+.|++++|++..+ ...+.+.+|+.|+
T Consensus 116 ~~l~~L~l~~n--~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNN--NITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCc--ccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 34444444444 333444332 2232 45555555555555554455555555555555555543 2233555555555
Q ss_pred cCCCCCCccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCccccccccCCCccchhhhcCCCCCCeEE
Q 000280 612 FRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLE 691 (1728)
Q Consensus 612 Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 691 (1728)
+++|.+..+|..++.+..|+.|.+++|. +..++.. +.++.++..|.+.++... ..+..++.++.|+.|+
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~---------~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE---------DLPESIGNLSNLETLD 261 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee---------eccchhccccccceec
Confidence 5555555555555455555555555542 2223332 445555555544433321 1133344444455555
Q ss_pred EEecccccCchhhhccccceeE
Q 000280 692 IHIRDARIMPQDLISMKLEIFR 713 (1728)
Q Consensus 692 l~~~~~~~~~~~~~~~~L~~l~ 713 (1728)
++.+.+..++......+++.+.
T Consensus 262 ~s~n~i~~i~~~~~~~~l~~L~ 283 (394)
T COG4886 262 LSNNQISSISSLGSLTNLRELD 283 (394)
T ss_pred cccccccccccccccCccCEEe
Confidence 5555544444422333344333
No 60
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=6.1e-07 Score=111.17 Aligned_cols=170 Identities=24% Similarity=0.359 Sum_probs=95.2
Q ss_pred eEEEEcCCCCCCCCCCCCCCC--CeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEec
Q 000280 514 SIAISLPNRDIDELPERLECP--KLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLE 591 (1728)
Q Consensus 514 ~~~lsl~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 591 (1728)
...+.+.++.+.+++...... +|+.|.+..| ....+|.. ...++.|+.|++++|.+..+|...+.+..|+.|+++
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N--~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN--KIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred eeEEecCCcccccCccccccchhhccccccccc--chhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 455556666666665554443 5666666655 34444322 255666666666666666666655566666666666
Q ss_pred CccCCCc-cccccccCCceeecCCCCCCccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCccccccc
Q 000280 592 GCQVGDV-AIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKV 670 (1728)
Q Consensus 592 ~~~i~~~-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 670 (1728)
+|.+..+ ..++.+.+|++|.+++|.+...|..+.++.++..|.+.++ .+..++.. ++++.+|+.|++++|.+.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~-~~~l~~l~~L~~s~n~i~---- 268 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPES-IGNLSNLETLDLSNNQIS---- 268 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccch-hccccccceecccccccc----
Confidence 6666553 3334555566666666655555666666666666665555 34444333 566666666666655542
Q ss_pred cCCCccchhhhcCCCCCCeEEEEecccc
Q 000280 671 EGGSNASLVELKGLSKLTTLEIHIRDAR 698 (1728)
Q Consensus 671 ~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 698 (1728)
.+..++.+.+|+.|+++.+...
T Consensus 269 ------~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 269 ------SISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ------ccccccccCccCEEeccCcccc
Confidence 1112556666666666555443
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=7.4e-06 Score=100.67 Aligned_cols=181 Identities=12% Similarity=0.168 Sum_probs=112.4
Q ss_pred CccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhcc------------------------CC
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK------------------------LF 207 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~------------------------~f 207 (1728)
.....++|.+..++.|.+++..++. +.+.++|..|+||||+|+.+++...-.. .|
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 4456789999999999999986655 4568999999999999999999774210 01
Q ss_pred CeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHH----HcCCcEEEEEeCCCCcc--ccccccCCCcc
Q 000280 208 DKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRL----KNVKRVLVILDNIWKLL--NLDAVGIPFGD 281 (1728)
Q Consensus 208 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlVlDdv~~~~--~~~~l~~~~~~ 281 (1728)
..+++++......+.+ +..+.+.+ ..++.-++|||+++... .++.+...+..
T Consensus 93 pDviEIdAas~~gVDd----------------------IReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE 150 (700)
T PRK12323 93 VDYIEMDAASNRGVDE----------------------MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE 150 (700)
T ss_pred CcceEecccccCCHHH----------------------HHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc
Confidence 1122222221111111 12222222 13567799999998773 34444333332
Q ss_pred cccccCCCCCCeEEEE-EeCCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHH
Q 000280 282 VKKERNDDRSRCTVLL-TSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1728)
Q Consensus 282 ~~~~~~~~~~g~~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1728)
-..++++|+ ||....+..........|.+..++.++..+.+.+.++.... ....+..+.|++.++|.|...
T Consensus 151 -------PP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi-~~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 151 -------PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI-AHEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred -------CCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 234455554 55545444322333568999999999999999887743221 122455678999999999654
Q ss_pred HHH
Q 000280 361 KTI 363 (1728)
Q Consensus 361 ~~~ 363 (1728)
..+
T Consensus 223 LsL 225 (700)
T PRK12323 223 LSL 225 (700)
T ss_pred HHH
Confidence 443
No 62
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.27 E-value=0.00016 Score=92.82 Aligned_cols=202 Identities=19% Similarity=0.104 Sum_probs=112.1
Q ss_pred ccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCC---CeeEEEEECCC---CCHHHHHHH
Q 000280 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF---DKVVFVEVTQT---PDLQTIQNK 227 (1728)
Q Consensus 154 ~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~~~ 227 (1728)
....++|++..+..+.+.+.......+.|+|++|+||||+|+.+++..+....+ ...-|+.+... .+...+...
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 345678999999998888876666789999999999999999998877543333 12345555421 122222211
Q ss_pred HH---------------HHhhhhh----------------cc-CCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccc
Q 000280 228 LS---------------SDLELEF----------------KQ-NENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLD 273 (1728)
Q Consensus 228 i~---------------~~l~~~~----------------~~-~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~ 273 (1728)
++ ...+... +. +.-....+..+.+.+. ++++.++-|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccch
Confidence 11 1111100 00 0111224456666665 57777776665544 3466
Q ss_pred cccCCCcccccccCCCCCCeEEEE--EeCCchhhcc-cCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHH
Q 000280 274 AVGIPFGDVKKERNDDRSRCTVLL--TSRNRDVLCN-DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIV 350 (1728)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~g~~ilv--TtR~~~v~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~ 350 (1728)
.+...+.. ..+...|+| ||++...... .......+.+.+++.+|.+.++++.+...... -.+++.+.|+
T Consensus 311 ~ik~~~~~-------~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~ 382 (615)
T TIGR02903 311 YIKKLFEE-------GAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIA 382 (615)
T ss_pred hhhhhccc-------CccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Confidence 66544443 333444444 5665432211 11223477899999999999999887532111 1133444444
Q ss_pred HHhCCChHHHHHHH
Q 000280 351 RRCGGLPVAIKTIA 364 (1728)
Q Consensus 351 ~~c~glPLai~~~a 364 (1728)
+....-+-|+..++
T Consensus 383 ~ys~~gRraln~L~ 396 (615)
T TIGR02903 383 RYTIEGRKAVNILA 396 (615)
T ss_pred HCCCcHHHHHHHHH
Confidence 44433344444443
No 63
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.26 E-value=3.3e-05 Score=92.79 Aligned_cols=185 Identities=13% Similarity=0.118 Sum_probs=108.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEE--CCCCCHHHHHHHHHH
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEV--TQTPDLQTIQNKLSS 230 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~ 230 (1728)
.....++|+++.++.+.+++.....+.+.++|..|+||||+|+.+++..... .+.. .++.+ +.......+ .+.+.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~~-~~i~~~~~~~~~~~~~-~~~i~ 90 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE-DWRE-NFLELNASDERGIDVI-RNKIK 90 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC-cccc-ceEEeccccccchHHH-HHHHH
Confidence 3456688999999999999987766778999999999999999999987422 2211 22322 222111111 11111
Q ss_pred HhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc--cccccCCCcccccccCCCCCCeEEEEEeCCc-hhhcc
Q 000280 231 DLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN--LDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCN 307 (1728)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~-~v~~~ 307 (1728)
.+....+ .....+-++|+|+++.... .+.+...+.. ....+++|+++... .+...
T Consensus 91 ~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~-------~~~~~~lIl~~~~~~~l~~~ 148 (319)
T PRK00440 91 EFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEM-------YSQNTRFILSCNYSSKIIDP 148 (319)
T ss_pred HHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhc-------CCCCCeEEEEeCCccccchh
Confidence 1110000 0012466899999876522 2223222222 23345677766432 22111
Q ss_pred cCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000280 308 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1728)
Q Consensus 308 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1728)
.......+++.+++.++....+...+..... .-.++.++.+++.++|.+..+...
T Consensus 149 l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r~~~~~ 203 (319)
T PRK00440 149 IQSRCAVFRFSPLKKEAVAERLRYIAENEGI-EITDDALEAIYYVSEGDMRKAINA 203 (319)
T ss_pred HHHHhheeeeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1122457899999999999998887742211 122567889999999988654433
No 64
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.6e-05 Score=98.06 Aligned_cols=178 Identities=16% Similarity=0.227 Sum_probs=110.5
Q ss_pred CccccccchHHHHHHHHHHHhcCC-ceEEEEEcCCcchHHHHHHHHHHHHHhccCC-----------------------C
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF-----------------------D 208 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~-~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f-----------------------~ 208 (1728)
.....++|.+..+..|..++..+. .+.+.++|+.|+||||+|+.+++...-.... .
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~ 97 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHP 97 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCC
Confidence 345678999999999988877654 4688899999999999999999977422111 0
Q ss_pred eeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCccc
Q 000280 209 KVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDV 282 (1728)
Q Consensus 209 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~ 282 (1728)
.++.++......+.++ ..+.+... .+++-++|+|+++.. ..++.+...+..
T Consensus 98 Dv~eidaas~~~vd~I----------------------r~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe- 154 (507)
T PRK06645 98 DIIEIDAASKTSVDDI----------------------RRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE- 154 (507)
T ss_pred cEEEeeccCCCCHHHH----------------------HHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh-
Confidence 1122222211122111 11111111 246779999999876 335555433333
Q ss_pred ccccCCCCCCeEEEE-EeCCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHH
Q 000280 283 KKERNDDRSRCTVLL-TSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1728)
Q Consensus 283 ~~~~~~~~~g~~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1728)
....+++|+ ||+...+..........+++.+++.+|....+.+.+..... .-.++.+..|++.++|.+--+
T Consensus 155 ------pp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi-~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 155 ------PPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL-KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred ------cCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 234556554 55555554422233467999999999999999988843221 122456778999999987443
No 65
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.25 E-value=5.4e-06 Score=93.85 Aligned_cols=171 Identities=13% Similarity=0.169 Sum_probs=104.2
Q ss_pred chHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccC
Q 000280 160 SRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQN 239 (1728)
Q Consensus 160 gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 239 (1728)
+.+..++.+.+++.....+.|.|+|..|+|||++|+.+++.... ....++|++++.-.+ ..
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHHH------hH-----------
Confidence 35567778887766666779999999999999999999998743 234556665443211 00
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc---cc-ccccCCCcccccccCCCCCCeEEEEEeCCchhhc--------c
Q 000280 240 ENVFQRAEKLRQRLKNVKRVLVILDNIWKLL---NL-DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC--------N 307 (1728)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---~~-~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~--------~ 307 (1728)
..+...+. +.-+|||||++... .| +.+...+.. . ...+.++|+||+...... .
T Consensus 82 -------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~----~--~~~~~~iIits~~~~~~~~~~~~~L~~ 146 (226)
T TIGR03420 82 -------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNR----V--REAGGRLLIAGRAAPAQLPLRLPDLRT 146 (226)
T ss_pred -------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHH----H--HHcCCeEEEECCCChHHCCcccHHHHH
Confidence 01112222 23489999998763 22 223221211 0 123347888887543111 0
Q ss_pred cCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 000280 308 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIAN 365 (1728)
Q Consensus 308 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~ 365 (1728)
.......+++.+++++|-..++...+.... ..--+++.+.|++.++|.|..+.-+..
T Consensus 147 r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHhcCeeEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 122246799999999999999887652111 122245677888889999877666543
No 66
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.7e-05 Score=97.68 Aligned_cols=189 Identities=17% Similarity=0.206 Sum_probs=110.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhccC-------------------CCeeEE
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKL-------------------FDKVVF 212 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~~-------------------f~~~~w 212 (1728)
.....++|.+.....|..++..+.. +.+.++|++|+||||+|+.+++....... +..++.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 3456789999988888888876665 56889999999999999999987632111 111223
Q ss_pred EEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCC
Q 000280 213 VEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDR 290 (1728)
Q Consensus 213 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 290 (1728)
++.+....+.++. +|.... ...-..+++-++|+|+++... ..+.+...+.. ..
T Consensus 91 l~aa~~~gid~iR-~i~~~~-----------------~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-------p~ 145 (472)
T PRK14962 91 LDAASNRGIDEIR-KIRDAV-----------------GYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-------PP 145 (472)
T ss_pred EeCcccCCHHHHH-HHHHHH-----------------hhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-------CC
Confidence 3332222222221 111111 000012467799999997652 23333332322 22
Q ss_pred CCeEEEEEeCC-chhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCC-ChHHHHHHHHHH
Q 000280 291 SRCTVLLTSRN-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGG-LPVAIKTIANAL 367 (1728)
Q Consensus 291 ~g~~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~a~~L 367 (1728)
....+|++|.+ ..+..........+.+.+++.++....+.+.+..... .-.++++..|++.++| ++.|+..+..+.
T Consensus 146 ~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 146 SHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33444444433 3333322334568999999999999988887732111 1225667889988765 467777766544
No 67
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=3.6e-05 Score=96.14 Aligned_cols=181 Identities=10% Similarity=0.169 Sum_probs=108.9
Q ss_pred cCccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhccC-------------------CCeeE
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKL-------------------FDKVV 211 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~~-------------------f~~~~ 211 (1728)
|.....++|.+..+..|..++..++. +.+.++|..|+||||+|+.+++...-... |-.++
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 34466789999999999999986654 56899999999999999999987532111 11112
Q ss_pred EEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHH----HcCCcEEEEEeCCCCccc--cccccCCCcccccc
Q 000280 212 FVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRL----KNVKRVLVILDNIWKLLN--LDAVGIPFGDVKKE 285 (1728)
Q Consensus 212 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~ 285 (1728)
.++......+. .++.+.... ..+++-++|+|+++.... .+.+...+..
T Consensus 92 EidaAs~~gVd----------------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE---- 145 (709)
T PRK08691 92 EIDAASNTGID----------------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE---- 145 (709)
T ss_pred EEeccccCCHH----------------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh----
Confidence 22222211111 111111111 124667999999987532 2233222222
Q ss_pred cCCCCCCeEEEEEeCCc-hhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000280 286 RNDDRSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1728)
Q Consensus 286 ~~~~~~g~~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1728)
-...+++|++|.+. .+.....+....|.+.+++.++....+.+.+..... .-..+.+..|++.++|.+.-+..
T Consensus 146 ---Pp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 146 ---PPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-AYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred ---CCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhCCCHHHHHH
Confidence 22345666666443 232212233457888899999999999887743221 12245678999999998854433
No 68
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.23 E-value=2.9e-06 Score=86.65 Aligned_cols=119 Identities=21% Similarity=0.273 Sum_probs=83.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhcc---CCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDK---LFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRL 253 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 253 (1728)
.+++.|+|.+|+|||++++++++...... .-..++|+.+....+...+...|+.+++.......+..+....+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46899999999999999999999874311 134577999988889999999999999987764456777778888888
Q ss_pred HcCCcEEEEEeCCCCccccccccCCCcccccccCCCCCCeEEEEEeCC
Q 000280 254 KNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRN 301 (1728)
Q Consensus 254 ~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~ 301 (1728)
.+.+..+||+|+++.... ......+.. +. +..+.++|++.+.
T Consensus 84 ~~~~~~~lviDe~~~l~~-~~~l~~l~~----l~-~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFS-DEFLEFLRS----LL-NESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHT-HHHHHHHHH----HT-CSCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCC-HHHHHHHHH----HH-hCCCCeEEEEECh
Confidence 866678999999987511 111111111 11 3567788887765
No 69
>PTZ00202 tuzin; Provisional
Probab=98.21 E-value=2.4e-05 Score=90.44 Aligned_cols=165 Identities=18% Similarity=0.215 Sum_probs=105.1
Q ss_pred ccCccccccchHHHHHHHHHHHhc---CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHH
Q 000280 151 SYTAYEQFDSRMKIFQNIMEVLKD---TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNK 227 (1728)
Q Consensus 151 ~~~~~~~~~gR~~~~~~l~~~L~~---~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (1728)
.|++..+|+||++++.++...|.+ +..++++|.|++|+|||||++.+..... ...++++.. +..+++..
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHHHHHH
Confidence 356678999999999999999963 2346899999999999999999996652 123444433 67999999
Q ss_pred HHHHhhhhhccCCCHHHHHHHHHHHHH----c-CCcEEEEEeCCCCcccccccc---CCCcccccccCCCCCCeEEEEEe
Q 000280 228 LSSDLELEFKQNENVFQRAEKLRQRLK----N-VKRVLVILDNIWKLLNLDAVG---IPFGDVKKERNDDRSRCTVLLTS 299 (1728)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~----~-~~~~LlVlDdv~~~~~~~~l~---~~~~~~~~~~~~~~~g~~ilvTt 299 (1728)
|+.+||.+. .....+....|.+.+. . +++.+||+-= .+...+..+. ..+.. ...-|+|++--
T Consensus 329 LL~ALGV~p--~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~-------drr~ch~v~ev 398 (550)
T PTZ00202 329 VVKALGVPN--VEACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALAC-------DRRLCHVVIEV 398 (550)
T ss_pred HHHHcCCCC--cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHc-------cchhheeeeee
Confidence 999999743 2333444444444443 3 6777777742 2222221110 01111 33457777654
Q ss_pred CCchhhc--ccCCCccEEEccCCCHHHHHHHHHHHh
Q 000280 300 RNRDVLC--NDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1728)
Q Consensus 300 R~~~v~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 333 (1728)
--+.+.. ...+.-.-|.+++++.++|..+-....
T Consensus 399 pleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 399 PLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 3332211 123345678899999999988765543
No 70
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.21 E-value=1.9e-05 Score=84.23 Aligned_cols=182 Identities=18% Similarity=0.156 Sum_probs=93.2
Q ss_pred cCccccccchHHHHHHHHHHHh-----cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHH
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLK-----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQN 226 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (1728)
|....+|+|.++.++.+.-++. +.....+.+||++|+||||||.-+++..... | .+++...-....++.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~dl~- 93 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGDLA- 93 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHHH-
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHHHH-
Confidence 4456789999998888655443 2356789999999999999999999987432 3 223221111111111
Q ss_pred HHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCcccc-cccCCCC-----------CC
Q 000280 227 KLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVK-KERNDDR-----------SR 292 (1728)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~-~~~~~~~-----------~g 292 (1728)
.++ ..+ +++-+|.+|+++... +-+.+..++.+.. +-..+.+ +=
T Consensus 94 ~il---------------------~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 94 AIL---------------------TNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp HHH---------------------HT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred HHH---------------------Hhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 111 122 245577778876641 1111110000000 0000111 12
Q ss_pred eEEEEEeCCchhhccc-CCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000280 293 CTVLLTSRNRDVLCND-MNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1728)
Q Consensus 293 ~~ilvTtR~~~v~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1728)
+-|=.|||...+.... .......+++..+.+|-.+..++.++. ...+-.++.+.+|++++.|-|--..-+
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~-l~i~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI-LNIEIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC-TT-EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH-hCCCcCHHHHHHHHHhcCCChHHHHHH
Confidence 2345688887655421 122345689999999999999887743 222334678999999999999644333
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=2.9e-06 Score=99.27 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=21.8
Q ss_pred ccceeeccCCCCcccccCCcccCCCcccceEEEeccccchhh
Q 000280 1448 QLTFLILRGLPRLKSFYPGVHISEWPVLKKLVVWECAEVELL 1489 (1728)
Q Consensus 1448 ~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~l 1489 (1728)
+|+.|.+++|.+++.++... +++|++|+|++|+++..+
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred CCcEEEccCCCCcccCCchh----hhhhhheEccCccccccc
Confidence 46666666666665555321 346666666666655554
No 72
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.4e-05 Score=96.10 Aligned_cols=195 Identities=15% Similarity=0.156 Sum_probs=111.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCce-EEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHH
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSD 231 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~-~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 231 (1728)
.....++|.+..+..|..++...... .+.++|+.|+||||+|+.+++...-...... ..+....+...+...+...
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g~~~d 91 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKGISSD 91 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHccCCcc
Confidence 44567899999999999999876654 5899999999999999999997632111000 0011111111111111000
Q ss_pred hh-hhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCcccccccCCCCCCeEEE-EEeCCch
Q 000280 232 LE-LEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVL-LTSRNRD 303 (1728)
Q Consensus 232 l~-~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~g~~il-vTtR~~~ 303 (1728)
+. .+.. .....+.+..+.+.+. .++.-++|+|+++.. ..++.+...+.. ......+| .||....
T Consensus 92 viEIdaa-s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-------Pp~~viFILaTte~~k 163 (484)
T PRK14956 92 VLEIDAA-SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-------PPAHIVFILATTEFHK 163 (484)
T ss_pred ceeechh-hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-------CCCceEEEeecCChhh
Confidence 00 0000 0000112223333322 346679999999876 345555443332 22344544 4454444
Q ss_pred hhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHH
Q 000280 304 VLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 359 (1728)
Q Consensus 304 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 359 (1728)
+..........|.+.+++.++..+.+.+.+..... .-.++....|++.++|.+.-
T Consensus 164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi-~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV-QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred ccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCChHHH
Confidence 43322333467999999999999998887642211 12356678899999998843
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=98.20 E-value=1.3e-05 Score=95.35 Aligned_cols=185 Identities=14% Similarity=0.107 Sum_probs=108.6
Q ss_pred cCccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCC-eeEEEEECCCCCHHHHHHHHHH
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD-KVVFVEVTQTPDLQTIQNKLSS 230 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 230 (1728)
|.....++|.++.++.|.+++..+..+.+.++|++|+||||+|+.+++...- ..|. .++-++.++......+ +++..
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~~v-r~~i~ 86 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGIDVV-RNKIK 86 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHHHH-HHHHH
Confidence 3445678899999999988888776777889999999999999999998732 1232 2222333332222211 11111
Q ss_pred HhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc--cccccCCCcccccccCCCCCCeEEEEEeCCc-hhhcc
Q 000280 231 DLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN--LDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCN 307 (1728)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~-~v~~~ 307 (1728)
.+..... .+..++.-++|||+++.... .+.+...+.. ....+++|+++... .+...
T Consensus 87 ~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-------~~~~t~~il~~n~~~~i~~~ 145 (319)
T PLN03025 87 MFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEI-------YSNTTRFALACNTSSKIIEP 145 (319)
T ss_pred HHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhc-------ccCCceEEEEeCCccccchh
Confidence 1110000 00113567999999987632 2222211211 23456677766432 22211
Q ss_pred cCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHH
Q 000280 308 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1728)
Q Consensus 308 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1728)
.......+++.++++++....+...+...... -.++....|++.++|-.-.+
T Consensus 146 L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~-i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 146 IQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP-YVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred HHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 11124579999999999999998877422111 12456788999999877433
No 74
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=2.8e-05 Score=92.22 Aligned_cols=177 Identities=15% Similarity=0.197 Sum_probs=113.7
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHH----hccCCCeeEEEEE-CCCCCHHHHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVI----EDKLFDKVVFVEV-TQTPDLQTIQNKLS 229 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~----~~~~f~~~~wv~~-~~~~~~~~~~~~i~ 229 (1728)
..++|.+..++.+.+++..+.. +...++|+.|+||||+|+.+++... ...|+|...|... +....+.++. ++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHH
Confidence 4567989999999999986554 5668999999999999999998752 2345666555442 2223333322 222
Q ss_pred HHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCcccccccCCCCCCeEEEEEeCCchhh-c
Q 000280 230 SDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL-C 306 (1728)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~-~ 306 (1728)
+.+.... . .+++-++|+|+++.. ..++.+...+.+ -..++.+|++|.+.... .
T Consensus 83 ~~~~~~p----------------~-~~~~kv~iI~~ad~m~~~a~naLLK~LEe-------pp~~t~~il~~~~~~~ll~ 138 (313)
T PRK05564 83 EEVNKKP----------------Y-EGDKKVIIIYNSEKMTEQAQNAFLKTIEE-------PPKGVFIILLCENLEQILD 138 (313)
T ss_pred HHHhcCc----------------c-cCCceEEEEechhhcCHHHHHHHHHHhcC-------CCCCeEEEEEeCChHhCcH
Confidence 2221110 0 246667777776554 456666555554 45678888888665422 1
Q ss_pred ccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000280 307 NDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1728)
Q Consensus 307 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1728)
........+.+.++++++....+.+.... ..++.++.++..++|.|..+..
T Consensus 139 TI~SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 139 TIKSRCQIYKLNRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred HHHhhceeeeCCCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 11223568999999999998888766531 1134467889999999875543
No 75
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.8e-05 Score=96.53 Aligned_cols=189 Identities=12% Similarity=0.177 Sum_probs=112.4
Q ss_pred CccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhc-------------------cCCCeeEE
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED-------------------KLFDKVVF 212 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~-------------------~~f~~~~w 212 (1728)
.....++|.+..++.|..++..... +.+.++|+.|+||||+|+.+++...-. ..|..+++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3456789999999999999986554 457899999999999999999866311 11222333
Q ss_pred EEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCC
Q 000280 213 VEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDR 290 (1728)
Q Consensus 213 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 290 (1728)
++......+.++ +++. ..+...-..+++-++|+|+++... .++.+...+.+ ..
T Consensus 93 idaas~~gvd~i-r~ii-----------------~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-------pp 147 (546)
T PRK14957 93 IDAASRTGVEET-KEIL-----------------DNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-------PP 147 (546)
T ss_pred eecccccCHHHH-HHHH-----------------HHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-------CC
Confidence 333222222211 1111 111111113577799999998663 34444333332 22
Q ss_pred CCeEEEE-EeCCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChH-HHHHHHHHH
Q 000280 291 SRCTVLL-TSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV-AIKTIANAL 367 (1728)
Q Consensus 291 ~g~~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~a~~L 367 (1728)
..+++|+ ||....+..........+++.+++.++....+.+.+.... ..-.++....|++.++|-+- |+..+-.++
T Consensus 148 ~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 148 EYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-INSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred CCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3455554 5444333321233357899999999998888887663211 12234566789999999664 555544333
No 76
>PF14516 AAA_35: AAA-like domain
Probab=98.18 E-value=0.00059 Score=81.10 Aligned_cols=211 Identities=15% Similarity=0.196 Sum_probs=124.1
Q ss_pred cCccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC-----CCHHHHHH
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT-----PDLQTIQN 226 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~ 226 (1728)
+.+...++.|...-+++.+.+.+++ ..+.|.|+-.+|||+|...+.+..+.. .| .++++++... .+..+.++
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHH
Confidence 4455667899977788888887643 589999999999999999999988643 33 4567877642 24555555
Q ss_pred HHH----HHhhhhhc--c-----CCCHHHHHHHHHHHHH--cCCcEEEEEeCCCCccccccccCCCcccccc----cCCC
Q 000280 227 KLS----SDLELEFK--Q-----NENVFQRAEKLRQRLK--NVKRVLVILDNIWKLLNLDAVGIPFGDVKKE----RNDD 289 (1728)
Q Consensus 227 ~i~----~~l~~~~~--~-----~~~~~~~~~~l~~~l~--~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~----~~~~ 289 (1728)
.++ ++++.... . ..........+.+.+. -+++.+|+||+|+.......+...|-.+.+. +...
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 444 44443221 0 1111222223333332 2589999999998763211110000000000 0000
Q ss_pred --CCCeEEE-EEe-CCchhhc---ccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000280 290 --RSRCTVL-LTS-RNRDVLC---NDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1728)
Q Consensus 290 --~~g~~il-vTt-R~~~v~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1728)
-..-+++ +.+ +...... ........++|++++.+|...|..++-.. . -....++|...+||+|..+..
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-~----~~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-F----SQEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-C----CHHHHHHHHHHHCCCHHHHHH
Confidence 0111122 211 1111111 01233468899999999999998876432 1 123388999999999999999
Q ss_pred HHHHHhcC
Q 000280 363 IANALKNK 370 (1728)
Q Consensus 363 ~a~~L~~~ 370 (1728)
++..+...
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99999764
No 77
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=5.6e-07 Score=102.12 Aligned_cols=185 Identities=21% Similarity=0.174 Sum_probs=123.5
Q ss_pred eEEEEcCCCCCCCCCC---CCCCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCcc--ccCCCcccEE
Q 000280 514 SIAISLPNRDIDELPE---RLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSS--LVCLISLRTL 588 (1728)
Q Consensus 514 ~~~lsl~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~--i~~L~~Lr~L 588 (1728)
.+.|++.++.+...+. .-.|+++|.|.++.|--.....--.+...+++|+.|.++.|.+...-++ -..+.||+.|
T Consensus 123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L 202 (505)
T KOG3207|consen 123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQL 202 (505)
T ss_pred hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheE
Confidence 3566777766665552 3368999999998882222222334557789999999999987654333 2367899999
Q ss_pred EecCccCC--Cc-cccccccCCceeecCCC-CCCccchHhhccccccEEeccCcccccccC--ccccccCcccceeccCC
Q 000280 589 SLEGCQVG--DV-AIVGQLKKLEILSFRNS-DIQQLPREIGQLVQLRLLDLRNCRRLQAIA--PNVISKLSRLEELYMGD 662 (1728)
Q Consensus 589 ~L~~~~i~--~~-~~i~~L~~L~~L~Ls~~-~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp--~~~i~~L~~L~~L~l~~ 662 (1728)
.|++|.++ ++ ...-.++.|+.|+|.+| .+..--.+..-+..|+.|||++| .+...+ .. ++.|+.|+.|+++.
T Consensus 203 ~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~-~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 203 VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYK-VGTLPGLNQLNLSS 280 (505)
T ss_pred EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccccc-cccccchhhhhccc
Confidence 99999987 23 45566788999999988 33322334556778999999998 455555 22 68899999998888
Q ss_pred CccccccccCCCccchhhhcCCCCCCeEEEEecccccCch
Q 000280 663 SFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQ 702 (1728)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~ 702 (1728)
+.+.- +..-+.........+.+|+.|++..|++...+.
T Consensus 281 tgi~s--i~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 281 TGIAS--IAEPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred cCcch--hcCCCccchhhhcccccceeeecccCccccccc
Confidence 77630 101111122234567788888888887755544
No 78
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=3.4e-05 Score=94.23 Aligned_cols=182 Identities=12% Similarity=0.146 Sum_probs=112.4
Q ss_pred CccccccchHHHHHHHHHHHhcCCce-EEEEEcCCcchHHHHHHHHHHHHHhc-------------------cCCCeeEE
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIED-------------------KLFDKVVF 212 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~-~i~I~G~gG~GKTtLa~~~~~~~~~~-------------------~~f~~~~w 212 (1728)
....+++|.+..++.|.+++..+... .+.++|+.|+||||+|+.+++...-. ..+..++.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 34567899999999998888866554 78999999999999999999854211 11222344
Q ss_pred EEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCC
Q 000280 213 VEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDR 290 (1728)
Q Consensus 213 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 290 (1728)
++.+....+.++. ++.+..... -. .+++-++|+|+++... ..+.+...+.+ -.
T Consensus 90 idaas~~~vddIR-~Iie~~~~~----------------P~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-------Pp 144 (491)
T PRK14964 90 IDAASNTSVDDIK-VILENSCYL----------------PI-SSKFKVYIIDEVHMLSNSAFNALLKTLEE-------PA 144 (491)
T ss_pred EecccCCCHHHHH-HHHHHHHhc----------------cc-cCCceEEEEeChHhCCHHHHHHHHHHHhC-------CC
Confidence 5444333333322 222211100 00 2466789999997763 23344333332 23
Q ss_pred CCeEEEEEe-CCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHH
Q 000280 291 SRCTVLLTS-RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1728)
Q Consensus 291 ~g~~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1728)
..+++|++| ....+..........+.+.+++.++....+.+.+..... .-.++.+..|++.++|.+-.+
T Consensus 145 ~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 145 PHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 455666555 444444322334568999999999999999888753221 122456778999999987543
No 79
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.12 E-value=1.4e-05 Score=83.71 Aligned_cols=129 Identities=17% Similarity=0.159 Sum_probs=74.7
Q ss_pred cchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhcc
Q 000280 159 DSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ 238 (1728)
Q Consensus 159 ~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 238 (1728)
.||+..+.++...+.....+.+.|+|.+|+|||++|+++++.... .-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc--CCCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 478889999999988766789999999999999999999998852 22446677665543322221111000
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCcccccccCCCCCCeEEEEEeCCch
Q 000280 239 NENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD 303 (1728)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~ 303 (1728)
............++.++|+||++.. .....+...+....... ....+..||+||....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-IDRENVRVIGATNRPL 131 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-ccCCCeEEEEecCccc
Confidence 0001111111247889999999864 11111111111100000 0136788888887654
No 80
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.11 E-value=3e-05 Score=87.31 Aligned_cols=170 Identities=13% Similarity=0.133 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCH
Q 000280 163 KIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENV 242 (1728)
Q Consensus 163 ~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 242 (1728)
..+..+.++......+.+.|+|+.|+|||+||+.+++..... -..+.|+++.....
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~---------------------- 86 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW---------------------- 86 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh----------------------
Confidence 345555555545555789999999999999999999987532 34567776543100
Q ss_pred HHHHHHHHHHHHcCCcEEEEEeCCCCc---ccccccc-CCCcccccccCCCCCCeEEEEEeCCchhhcc--------cCC
Q 000280 243 FQRAEKLRQRLKNVKRVLVILDNIWKL---LNLDAVG-IPFGDVKKERNDDRSRCTVLLTSRNRDVLCN--------DMN 310 (1728)
Q Consensus 243 ~~~~~~l~~~l~~~~~~LlVlDdv~~~---~~~~~l~-~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~--------~~~ 310 (1728)
....+.+.+. .--+|++||+... ..|+... ..+.. +. ...+.++|+||+...-... .+.
T Consensus 87 --~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~----~~-e~g~~~li~ts~~~p~~l~~~~~~L~SRl~ 157 (235)
T PRK08084 87 --FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNR----IL-ESGRTRLLITGDRPPRQLNLGLPDLASRLD 157 (235)
T ss_pred --hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHH----HH-HcCCCeEEEeCCCChHHcCcccHHHHHHHh
Confidence 0011222232 2248899999764 2343211 11111 10 1223479999986532210 344
Q ss_pred CccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHH
Q 000280 311 SQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANA 366 (1728)
Q Consensus 311 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~~ 366 (1728)
...+++++++++++-.+.+++++... .-.-.++++.-|++.+.|..-++..+-..
T Consensus 158 ~g~~~~l~~~~~~~~~~~l~~~a~~~-~~~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 158 WGQIYKLQPLSDEEKLQALQLRARLR-GFELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred CCceeeecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 45789999999999999998866422 12233677888999998877655544433
No 81
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=8.6e-05 Score=92.57 Aligned_cols=185 Identities=12% Similarity=0.167 Sum_probs=110.6
Q ss_pred cCccccccchHHHHHHHHHHHhcCCce-EEEEEcCCcchHHHHHHHHHHHHHhcc-------------------CCCeeE
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDK-------------------LFDKVV 211 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-~i~I~G~gG~GKTtLa~~~~~~~~~~~-------------------~f~~~~ 211 (1728)
|.....++|.+..++.|..++.....+ .+.++|+.|+||||+|+.+++...-.. .|..++
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 344667899999999999999866654 568999999999999999999773221 111233
Q ss_pred EEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCcccccccCCC
Q 000280 212 FVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDD 289 (1728)
Q Consensus 212 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 289 (1728)
.++.+....+.++ +++.+.+.. .-..++.-++|+|+|+... ..+.+...+.. -
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~-----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-------p 146 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPY-----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEE-------P 146 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhh-----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhc-------c
Confidence 3333322223322 122221111 0112566789999998762 33333332322 2
Q ss_pred CCCeEEEEEeCC-chhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000280 290 RSRCTVLLTSRN-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1728)
Q Consensus 290 ~~g~~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1728)
...+++|++|.+ ..+..........+++.+++.++....+...+..... .-.++.+..|++.++|-+.-+..
T Consensus 147 p~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 147 PSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV-EFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred CCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHH
Confidence 345666665543 3333212223457889999999988877776632211 11245577899999998854443
No 82
>PRK08727 hypothetical protein; Validated
Probab=98.11 E-value=2.5e-05 Score=87.89 Aligned_cols=172 Identities=12% Similarity=0.123 Sum_probs=101.1
Q ss_pred cccccchHH-HHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhh
Q 000280 155 YEQFDSRMK-IFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLE 233 (1728)
Q Consensus 155 ~~~~~gR~~-~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 233 (1728)
.+.|++... .+..+.....+.....+.|+|..|+|||.||+++++..... ...++|+++.+ ....+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~----- 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL----- 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH-----
Confidence 445654443 33333333334444679999999999999999999987543 33566776322 11111
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc---ccccccCCCcccccccCCCCCCeEEEEEeCCchhhcc---
Q 000280 234 LEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL---NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN--- 307 (1728)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~--- 307 (1728)
....+.+. ..-+||+||++... .|......+ ...+ ...|..||+||+...-...
T Consensus 85 -------------~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l---~n~~--~~~~~~vI~ts~~~p~~l~~~~ 144 (233)
T PRK08727 85 -------------RDALEALE--GRSLVALDGLESIAGQREDEVALFDF---HNRA--RAAGITLLYTARQMPDGLALVL 144 (233)
T ss_pred -------------HHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHH---HHHH--HHcCCeEEEECCCChhhhhhhh
Confidence 11223332 44599999997553 222211111 1111 1245679999986422110
Q ss_pred -----cCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHH
Q 000280 308 -----DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1728)
Q Consensus 308 -----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1728)
.+.....+++++++.++-..++++++.... -.-.+++...|++.++|-.-.+
T Consensus 145 ~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 145 PDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 222346899999999999999998774211 1223566778899988766544
No 83
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=3.7e-05 Score=96.86 Aligned_cols=196 Identities=12% Similarity=0.127 Sum_probs=110.4
Q ss_pred CccccccchHHHHHHHHHHHhcCCce-EEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHH
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSD 231 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~-~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 231 (1728)
.....++|.+..++.|...+..+... .+.++|..|+||||+|+.+++...-...+.. .....-.....|...
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~~g 85 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIEQG 85 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHHcC
Confidence 44667899999999999999876654 4689999999999999999987743211100 000000111111100
Q ss_pred hhhh---hccC-CCHHHHHHHHHHHH----HcCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEE-EeC
Q 000280 232 LELE---FKQN-ENVFQRAEKLRQRL----KNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLL-TSR 300 (1728)
Q Consensus 232 l~~~---~~~~-~~~~~~~~~l~~~l----~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilv-TtR 300 (1728)
-... .+.. ....+.++.+.+.+ ..+++-++|||+++... ..+.+...+-. -...+++|+ ||.
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-------Pp~~v~FIL~Tt~ 158 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------PPEHVKFLLATTD 158 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-------CCCCeEEEEecCC
Confidence 0000 0000 00011112222222 23577799999998763 33444332322 223455555 444
Q ss_pred CchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000280 301 NRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1728)
Q Consensus 301 ~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1728)
...+..........|.+.+++.++....+.+.+.... ....++....|++.++|.+-.+..+
T Consensus 159 ~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 159 PQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ-IPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred ccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4444332233357899999999999999988763211 1222455678999999988644443
No 84
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=8.3e-05 Score=88.13 Aligned_cols=200 Identities=11% Similarity=0.122 Sum_probs=116.3
Q ss_pred ccCccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhccC--CCeeEEEEECCCCCHHHHHHH
Q 000280 151 SYTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKL--FDKVVFVEVTQTPDLQTIQNK 227 (1728)
Q Consensus 151 ~~~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~ 227 (1728)
.|.....++|.++..+.+..++..+.. +.+.|+|+.|+||||+|..+++..-.... +.... .......-...+.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~ 94 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQ 94 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHH
Confidence 355667789999999999999986654 56899999999999999999998743110 11110 0111111112333
Q ss_pred HHHHhh-------hhhcc------CCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCC
Q 000280 228 LSSDLE-------LEFKQ------NENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERND 288 (1728)
Q Consensus 228 i~~~l~-------~~~~~------~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 288 (1728)
|...-. .+.+. ..-..+.+..+.+.+. .+++-++|+|+++... ..+.+...+..
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE------- 167 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE------- 167 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc-------
Confidence 332211 00000 0001233445555554 3577799999998763 22333222222
Q ss_pred CCCCeE-EEEEeCCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000280 289 DRSRCT-VLLTSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1728)
Q Consensus 289 ~~~g~~-ilvTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1728)
-..++. |++|++...+..........+++.+++.++...++...... .. -.++.+..|++.++|.|.....+
T Consensus 168 pp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~--~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 168 PPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG--SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 122344 44554444443322233468999999999999999874322 11 22455778999999999765443
No 85
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.09 E-value=1e-05 Score=88.36 Aligned_cols=74 Identities=19% Similarity=0.332 Sum_probs=43.6
Q ss_pred cccchHHHHHHHHHHHh---cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-----CHHHHHHHH
Q 000280 157 QFDSRMKIFQNIMEVLK---DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-----DLQTIQNKL 228 (1728)
Q Consensus 157 ~~~gR~~~~~~l~~~L~---~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~~~i 228 (1728)
.|+||+++++++.+.+. ....+.+.|+|.+|+|||+|+++++........+ ++.+.+.... ....+++++
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 78 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDSERNPYSPFRSALRQL 78 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETTTS-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEeccccchhhHHHHHHHHH
Confidence 48999999999999993 4456899999999999999999999998765222 3334443331 134555555
Q ss_pred HHHh
Q 000280 229 SSDL 232 (1728)
Q Consensus 229 ~~~l 232 (1728)
+.++
T Consensus 79 ~~~~ 82 (185)
T PF13191_consen 79 IDQL 82 (185)
T ss_dssp S---
T ss_pred HHHh
Confidence 5443
No 86
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.09 E-value=5.6e-06 Score=92.67 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=64.2
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC--CCHHHHHHHHHHHhhhhhccCCCHH------HHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT--PDLQTIQNKLSSDLELEFKQNENVF------QRAEK 248 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 248 (1728)
-..++|+|++|+|||||++++++..... +|+.++|+.+.+. .++.++++.+...+-....+..... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999988654 8999999997766 7899999999333222211111111 11122
Q ss_pred HHHHHHcCCcEEEEEeCCCCc
Q 000280 249 LRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 249 l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
......+++++++++|++...
T Consensus 95 a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHh
Confidence 222234579999999999764
No 87
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.07 E-value=5.2e-05 Score=82.72 Aligned_cols=160 Identities=17% Similarity=0.168 Sum_probs=94.0
Q ss_pred HHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhc--------------------cCCCeeEEEEECC-CCCHHHH
Q 000280 167 NIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVVFVEVTQ-TPDLQTI 224 (1728)
Q Consensus 167 ~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~--------------------~~f~~~~wv~~~~-~~~~~~~ 224 (1728)
.+.+.+...+. +.+.++|+.|+||||+|+.+++..... .+.|. .++.... ....+++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 45566665555 678999999999999999999987432 11122 2222111 1111111
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEEEeCCc
Q 000280 225 QNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR 302 (1728)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~ 302 (1728)
+++.+.+... -..+.+-++|+||++... .++.+...+.+ ....+.+|++|++.
T Consensus 82 -~~i~~~~~~~-----------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~-------~~~~~~~il~~~~~ 136 (188)
T TIGR00678 82 -RELVEFLSRT-----------------PQESGRRVVIIEDAERMNEAAANALLKTLEE-------PPPNTLFILITPSP 136 (188)
T ss_pred -HHHHHHHccC-----------------cccCCeEEEEEechhhhCHHHHHHHHHHhcC-------CCCCeEEEEEECCh
Confidence 1112111100 002467789999997763 23444333332 23455666666544
Q ss_pred -hhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHH
Q 000280 303 -DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 359 (1728)
Q Consensus 303 -~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 359 (1728)
.+..........+.+.+++.++..+.+.+. | . .++.+..|++.++|.|..
T Consensus 137 ~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 137 EKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G--I----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C--C----CHHHHHHHHHHcCCCccc
Confidence 222212223468999999999998888876 3 1 146688999999998853
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=5e-05 Score=95.52 Aligned_cols=198 Identities=12% Similarity=0.130 Sum_probs=110.2
Q ss_pred CccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhccCC--CeeEEEEECCCCCHHHHHHHHH
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLF--DKVVFVEVTQTPDLQTIQNKLS 229 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~ 229 (1728)
.....++|.+..+..|.+++..... +.+.++|..|+||||+|+.+++...-.... ++.-.- ....-.....|.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~----pCg~C~~C~~i~ 88 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT----PCGVCQACRDID 88 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC----CCCccHHHHHHH
Confidence 3456789999999999999986655 566899999999999999998876321100 000000 000001111110
Q ss_pred HHhh-----hhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEEE
Q 000280 230 SDLE-----LEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLT 298 (1728)
Q Consensus 230 ~~l~-----~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilvT 298 (1728)
..-. .+....... +.+..+.+... .++.-++|||+|+... .++.+...+.+ -...+++|++
T Consensus 89 ~g~h~D~~eldaas~~~V-d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE-------PP~~~~fIL~ 160 (618)
T PRK14951 89 SGRFVDYTELDAASNRGV-DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE-------PPEYLKFVLA 160 (618)
T ss_pred cCCCCceeecCcccccCH-HHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc-------CCCCeEEEEE
Confidence 0000 000000011 11122222221 2455689999998873 34444333332 2345566655
Q ss_pred e-CCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000280 299 S-RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1728)
Q Consensus 299 t-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1728)
| ....+..........+++.+++.++....+.+.+..... .-..+.+..|++.++|.+--+..+
T Consensus 161 Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-PAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred ECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5 434443322334578999999999999999887743221 122456788999999988544443
No 89
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.06 E-value=3.8e-05 Score=99.01 Aligned_cols=172 Identities=22% Similarity=0.293 Sum_probs=101.5
Q ss_pred CccccccchHHHHH---HHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHH
Q 000280 153 TAYEQFDSRMKIFQ---NIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLS 229 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~---~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (1728)
.....|+|++..+. .+.+++.......+.++|++|+||||+|+.+++... .+|. .++... ..+.++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~---~lna~~-~~i~di----- 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHFS---SLNAVL-AGVKDL----- 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccce---eehhhh-hhhHHH-----
Confidence 44567899998774 566777767777889999999999999999998763 3331 111110 011111
Q ss_pred HHhhhhhccCCCHHHHHHHHHHHHH-cCCcEEEEEeCCCCc--cccccccCCCcccccccCCCCCCeEEEEE--eCCch-
Q 000280 230 SDLELEFKQNENVFQRAEKLRQRLK-NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLT--SRNRD- 303 (1728)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~g~~ilvT--tR~~~- 303 (1728)
.+......+.+. .+++.+||||||+.. ..++.+... ...|..++|+ |.+..
T Consensus 94 -------------r~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~----------lE~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 94 -------------RAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW----------VENGTITLIGATTENPYF 150 (725)
T ss_pred -------------HHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH----------hcCceEEEEEecCCChHh
Confidence 111111222221 146789999999765 334444322 2235555553 34331
Q ss_pred -hhcccCCCccEEEccCCCHHHHHHHHHHHhCC------CCCCCchHHHHHHHHHHhCCChH
Q 000280 304 -VLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGD------SAKASDFRVIADEIVRRCGGLPV 358 (1728)
Q Consensus 304 -v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~------~~~~~~~~~~~~~i~~~c~glPL 358 (1728)
+..........+.+++++.++...++.+.+.+ .....-.+++.+.|++.+.|..-
T Consensus 151 ~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 151 EVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11111222457999999999999999887631 11112235667889999988754
No 90
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=3.8e-05 Score=95.10 Aligned_cols=199 Identities=11% Similarity=0.121 Sum_probs=108.3
Q ss_pred cCccccccchHHHHHHHHHHHhcCC-ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHH
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 230 (1728)
|.....++|++..++.+.+++..+. .+.+.++|+.|+||||+|+.+++...-.. |.... ....-...+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~ 84 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINT 84 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHc
Confidence 3445678999999999999987654 45788999999999999999999873211 11100 0000011111111
Q ss_pred Hhhhhh---cc-CCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCcccccccCCCCCCeEEEEEe-
Q 000280 231 DLELEF---KQ-NENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTS- 299 (1728)
Q Consensus 231 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~g~~ilvTt- 299 (1728)
...... +. .....+.++.+.+... .+++-++|+|+++.. ..++.+...+.. -...+.+|++|
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-------Pp~~tvfIL~Tt 157 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-------PPKHVVFIFATT 157 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-------CCCcEEEEEECC
Confidence 100000 00 0000011112222111 134457999999875 233444332322 22345555444
Q ss_pred CCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChH-HHHHHHH
Q 000280 300 RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV-AIKTIAN 365 (1728)
Q Consensus 300 R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~a~ 365 (1728)
....+..........+++.+++.++....+.+.+..... .-.++.+..+++.++|.+- |+..+-.
T Consensus 158 ~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 158 EFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred ChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 443333222233568999999999999988887642211 1124567889999999764 4444443
No 91
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=7.2e-05 Score=89.87 Aligned_cols=173 Identities=13% Similarity=0.108 Sum_probs=105.2
Q ss_pred cccccchHHHHHHHHHHHhcCC----------ceEEEEEcCCcchHHHHHHHHHHHHHhc-------------------c
Q 000280 155 YEQFDSRMKIFQNIMEVLKDTN----------VGMIGVYGVNGVGKTTLVKQIAMQVIED-------------------K 205 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~~~~----------~~~i~I~G~gG~GKTtLa~~~~~~~~~~-------------------~ 205 (1728)
...++|.+..++.|.+++..+. .+.+.++|+.|+|||++|+.+++...-. .
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 3467899999999999998542 4678899999999999999998865321 1
Q ss_pred CCCeeEEEEEC-CCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCC
Q 000280 206 LFDKVVFVEVT-QTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIP 278 (1728)
Q Consensus 206 ~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~ 278 (1728)
|.| +.++... ....+.+ ++.+.+... .+++-++|+|+++... ..+.+...
T Consensus 84 hpD-~~~i~~~~~~i~i~~----------------------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 84 HPD-VRVVAPEGLSIGVDE----------------------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CCC-EEEeccccccCCHHH----------------------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 111 1222111 1111111 222222222 2456688889998763 22333222
Q ss_pred CcccccccCCCCCCeEEEEEeCC-chhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000280 279 FGDVKKERNDDRSRCTVLLTSRN-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1728)
Q Consensus 279 ~~~~~~~~~~~~~g~~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1728)
+.. ...+..+|++|.+ ..+..........+.+.+++.++....+.+..+. ..+.+..+++.++|.|
T Consensus 141 LEe-------p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~------~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 141 VEE-------PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV------DPETARRAARASQGHI 207 (394)
T ss_pred hhc-------CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC------CHHHHHHHHHHcCCCH
Confidence 222 2334555555554 3444322333568999999999999888754431 1355778999999999
Q ss_pred HHHHHH
Q 000280 358 VAIKTI 363 (1728)
Q Consensus 358 Lai~~~ 363 (1728)
.....+
T Consensus 208 ~~A~~l 213 (394)
T PRK07940 208 GRARRL 213 (394)
T ss_pred HHHHHH
Confidence 754433
No 92
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=0.00011 Score=87.65 Aligned_cols=199 Identities=11% Similarity=0.038 Sum_probs=113.3
Q ss_pred cCccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeE----EEEECCCCCHHHHHH
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVV----FVEVTQTPDLQTIQN 226 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~----wv~~~~~~~~~~~~~ 226 (1728)
|+....++|.++..+.|.+++..+.. +.+.++|+.|+||+|+|..+++..--+....... -.++.. ...-...+
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c~ 93 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVAR 93 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHHH
Confidence 44566789999999999999987664 4688999999999999999999874221111000 000000 00001111
Q ss_pred HHHHHhhhh-------hcc------CCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccC
Q 000280 227 KLSSDLELE-------FKQ------NENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERN 287 (1728)
Q Consensus 227 ~i~~~l~~~-------~~~------~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~ 287 (1728)
.|...-..+ .++ ..-..+.+..+.+.+. .+++.++|+|+++... ..+.+...+..
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe------ 167 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE------ 167 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc------
Confidence 111111000 000 0001223444444443 3477799999998763 22333222222
Q ss_pred CCCCCeEEEEEeCCc-hhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000280 288 DDRSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1728)
Q Consensus 288 ~~~~g~~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1728)
-..++.+|++|.+. .+..........+.+.+++.++..+++.+..+... .+....+++.++|.|.....+
T Consensus 168 -pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 168 -PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred -CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 23456666666655 33322233456899999999999999988653211 122367899999999865444
No 93
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00015 Score=90.55 Aligned_cols=185 Identities=16% Similarity=0.210 Sum_probs=112.0
Q ss_pred CccccccchHHHHHHHHHHHhcCC-ceEEEEEcCCcchHHHHHHHHHHHHHhccCCC-------------------eeEE
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD-------------------KVVF 212 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~-~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~-------------------~~~w 212 (1728)
.....++|.+..++.|.+++.... .+.+.++|+.|+||||+|+.+++...-....+ .+++
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~e 92 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVE 92 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 345667899988888988888655 46788899999999999999998774211000 0222
Q ss_pred EEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCccccccc
Q 000280 213 VEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKER 286 (1728)
Q Consensus 213 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~ 286 (1728)
++......+.+ ++.+.+.+. .+++-++|+|+++.. ...+.+...+..
T Consensus 93 Id~a~~~~Id~----------------------iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE----- 145 (624)
T PRK14959 93 IDGASNRGIDD----------------------AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE----- 145 (624)
T ss_pred EecccccCHHH----------------------HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc-----
Confidence 32211111111 112222221 256779999999876 233444333322
Q ss_pred CCCCCCeEEEEEeCC-chhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh-HHHHHHH
Q 000280 287 NDDRSRCTVLLTSRN-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP-VAIKTIA 364 (1728)
Q Consensus 287 ~~~~~g~~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~a 364 (1728)
-.....+|++|.+ ..+..........+++.+++.++....+.+.+.... ..-.++.++.|++.++|.+ .|+..+.
T Consensus 146 --P~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-i~id~eal~lIA~~s~GdlR~Al~lLe 222 (624)
T PRK14959 146 --PPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-VDYDPAAVRLIARRAAGSVRDSMSLLG 222 (624)
T ss_pred --cCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2234555555544 444322222345789999999999988888664211 1123566788999999965 6777766
Q ss_pred HHH
Q 000280 365 NAL 367 (1728)
Q Consensus 365 ~~L 367 (1728)
..+
T Consensus 223 qll 225 (624)
T PRK14959 223 QVL 225 (624)
T ss_pred HHH
Confidence 554
No 94
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=3.7e-05 Score=93.88 Aligned_cols=202 Identities=16% Similarity=0.184 Sum_probs=111.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCce-EEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEE-CCCCCHHHHHHHHHH
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEV-TQTPDLQTIQNKLSS 230 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~-~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~ 230 (1728)
.....++|.+..++.|..++..+.++ .+.++|+.|+||||+|+.+++...-...++...|..- ......=.....+..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 34567889999999999999876654 5889999999999999999998742211111111100 000000001111111
Q ss_pred Hhhhhh---cc-CCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEEEe-
Q 000280 231 DLELEF---KQ-NENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTS- 299 (1728)
Q Consensus 231 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilvTt- 299 (1728)
.-..+. +. .....+.+..+.+.+. .+++-++|+|+++... .++.+...+.+ -...+.+|++|
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe-------p~~~t~~Il~t~ 165 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE-------PPPHAIFIFATT 165 (397)
T ss_pred CCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc-------CCCCeEEEEEeC
Confidence 100000 00 0011122223333332 2466789999998763 34444333332 23455665555
Q ss_pred CCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000280 300 RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1728)
Q Consensus 300 R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1728)
+...+..........+++.++++++....+...+.... ..-.++.++.|++.++|.+--+..
T Consensus 166 ~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 166 ELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred ChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 43433321112245788999999999988888773211 112356788999999998854444
No 95
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.04 E-value=8.9e-05 Score=90.45 Aligned_cols=185 Identities=13% Similarity=0.178 Sum_probs=110.4
Q ss_pred CccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhc--------------------cCCCeeE
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVV 211 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~--------------------~~f~~~~ 211 (1728)
.....++|.+..++.+.+++..... +.+.++|+.|+||||+|+.+++..... .+++. +
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 3455679999999999999986554 467899999999999999999886321 12222 2
Q ss_pred EEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCcccccccCCC
Q 000280 212 FVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDD 289 (1728)
Q Consensus 212 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~ 289 (1728)
+++......... .+++...+... .. .+++-++|+|+++.. ...+.+...+.+ .
T Consensus 90 ~~~~~~~~~~~~-~~~l~~~~~~~----------------p~-~~~~~vviidea~~l~~~~~~~Ll~~le~-------~ 144 (355)
T TIGR02397 90 EIDAASNNGVDD-IREILDNVKYA----------------PS-SGKYKVYIIDEVHMLSKSAFNALLKTLEE-------P 144 (355)
T ss_pred EeeccccCCHHH-HHHHHHHHhcC----------------cc-cCCceEEEEeChhhcCHHHHHHHHHHHhC-------C
Confidence 332221111111 11122211100 01 145668999998765 223333333322 2
Q ss_pred CCCeEEEEEeCCch-hhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHH
Q 000280 290 RSRCTVLLTSRNRD-VLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 364 (1728)
Q Consensus 290 ~~g~~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a 364 (1728)
...+.+|++|.+.. +..........+++.++++++....+...+..... .-.++.+..|++.++|.|..+....
T Consensus 145 ~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 145 PEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred ccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 34566666665443 22212223457889999999999998887732111 1124678889999999987665544
No 96
>PRK09087 hypothetical protein; Validated
Probab=98.03 E-value=4.3e-05 Score=85.03 Aligned_cols=147 Identities=15% Similarity=0.069 Sum_probs=89.7
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHc
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1728)
..+.+.|+|..|+|||+|++.+++... +.|++.. .+..++. ..+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~---------------------~~~~- 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAA---------------------NAAA- 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHH---------------------Hhhh-
Confidence 346799999999999999998887642 2244321 1111111 1111
Q ss_pred CCcEEEEEeCCCCcc-ccccccCCCcccccccCCCCCCeEEEEEeCCch---------hhcccCCCccEEEccCCCHHHH
Q 000280 256 VKRVLVILDNIWKLL-NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD---------VLCNDMNSQKFFLIEVLSYEEA 325 (1728)
Q Consensus 256 ~~~~LlVlDdv~~~~-~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~---------v~~~~~~~~~~~~l~~L~~~ea 325 (1728)
.-+|++||++... +-+.+...+.. + ...|..||+|++... ..+ .+.....+++++++.++-
T Consensus 88 --~~~l~iDDi~~~~~~~~~lf~l~n~----~--~~~g~~ilits~~~p~~~~~~~~dL~S-Rl~~gl~~~l~~pd~e~~ 158 (226)
T PRK09087 88 --EGPVLIEDIDAGGFDETGLFHLINS----V--RQAGTSLLMTSRLWPSSWNVKLPDLKS-RLKAATVVEIGEPDDALL 158 (226)
T ss_pred --cCeEEEECCCCCCCCHHHHHHHHHH----H--HhCCCeEEEECCCChHHhccccccHHH-HHhCCceeecCCCCHHHH
Confidence 1278889997542 11112111111 1 234667899887432 222 345567999999999999
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000280 326 WCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANAL 367 (1728)
Q Consensus 326 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~~L 367 (1728)
.+++++++... ...--+++.+.|++++.|..-++..+-..|
T Consensus 159 ~~iL~~~~~~~-~~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 159 SQVIFKLFADR-QLYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999988532 122236778889999988887666544333
No 97
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00015 Score=92.37 Aligned_cols=183 Identities=13% Similarity=0.173 Sum_probs=111.9
Q ss_pred ccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHh---------------------ccCCCeeE
Q 000280 154 AYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIE---------------------DKLFDKVV 211 (1728)
Q Consensus 154 ~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~---------------------~~~f~~~~ 211 (1728)
....++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+++...- ..+|+. .
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 356789999999999999987655 45789999999999999999987631 123332 2
Q ss_pred EEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCcccccccCCC
Q 000280 212 FVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDD 289 (1728)
Q Consensus 212 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 289 (1728)
.++.++...+.++. +++.++.... ..+++-++|+|+++... .++.+...+.. -
T Consensus 94 ~ld~~~~~~vd~Ir-~li~~~~~~P-----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEe-------p 148 (614)
T PRK14971 94 ELDAASNNSVDDIR-NLIEQVRIPP-----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEE-------P 148 (614)
T ss_pred EecccccCCHHHHH-HHHHHHhhCc-----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhC-------C
Confidence 23332222222222 1112111100 01466688999998763 34444333332 2
Q ss_pred CCCeEEEE-EeCCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000280 290 RSRCTVLL-TSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1728)
Q Consensus 290 ~~g~~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1728)
...+.+|+ ||+...+..........+++.+++.++....+.+.+....- .-..+.+..|++.++|-.--+...
T Consensus 149 p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i~~~al~~La~~s~gdlr~al~~ 222 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TAEPEALNVIAQKADGGMRDALSI 222 (614)
T ss_pred CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 23455555 54545444322334578999999999999999887743221 122456788999999977544333
No 98
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.02 E-value=0.0001 Score=82.79 Aligned_cols=196 Identities=15% Similarity=0.164 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHhc---CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCC----eeEEEEECCCCCHHHHHHHHHHHhhh
Q 000280 162 MKIFQNIMEVLKD---TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD----KVVFVEVTQTPDLQTIQNKLSSDLEL 234 (1728)
Q Consensus 162 ~~~~~~l~~~L~~---~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~~l~~ 234 (1728)
.+.++.+.+.+.. ...+.+.|+|..|.|||++++++.+.+-....-+ .|+.|.+...++...++..|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 3456666666663 3456899999999999999999998774321112 37788888999999999999999999
Q ss_pred hhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc-----cccccCCCcccccccCCCCCCeEEEEEeCCchhhcc--
Q 000280 235 EFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN-----LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN-- 307 (1728)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-----~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~-- 307 (1728)
+.............+.+.++.-+--+||+|++.+... -..+...+. .+.+.-.-+-|.|-|+.-.-+-.
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK----~L~NeL~ipiV~vGt~~A~~al~~D 198 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK----FLGNELQIPIVGVGTREAYRALRTD 198 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH----HHhhccCCCeEEeccHHHHHHhccC
Confidence 8865666666666666677655777999999988521 111111111 11112233445565554322211
Q ss_pred --cCCCccEEEccCCCHHHHH-HHHHHHhC----CCCCCCchHHHHHHHHHHhCCChHHHH
Q 000280 308 --DMNSQKFFLIEVLSYEEAW-CLFEKIVG----DSAKASDFRVIADEIVRRCGGLPVAIK 361 (1728)
Q Consensus 308 --~~~~~~~~~l~~L~~~ea~-~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~glPLai~ 361 (1728)
......++.++....++-. .|+..... .....-...++++.|...++|+.--+.
T Consensus 199 ~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 199 PQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 0112345666666655544 33333221 112223347889999999999874433
No 99
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.02 E-value=7.2e-05 Score=90.73 Aligned_cols=176 Identities=17% Similarity=0.215 Sum_probs=102.7
Q ss_pred ccccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCC
Q 000280 154 AYEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1728)
Q Consensus 154 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 220 (1728)
....+.|+++.++++.+++.- ...+-+.++|++|+|||++|+++++... ..| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCE-----Eecch---
Confidence 345688999999999888741 1245699999999999999999999763 222 22221
Q ss_pred HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccCCCccccc
Q 000280 221 LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN----------------LDAVGIPFGDVKK 284 (1728)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~~~~~~~ 284 (1728)
.++.... .+ ........+.+......+.+|+||+++.... +..+...+..
T Consensus 190 -~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~--- 255 (364)
T TIGR01242 190 -SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG--- 255 (364)
T ss_pred -HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC---
Confidence 1111110 10 1112233344444445678999999976411 0011000100
Q ss_pred ccCCCCCCeEEEEEeCCchhhcc----cCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000280 285 ERNDDRSRCTVLLTSRNRDVLCN----DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1728)
Q Consensus 285 ~~~~~~~g~~ilvTtR~~~v~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1728)
.....+.+||.||........ .......+.++..+.++..++|+.++.......+. -..++++.+.|..
T Consensus 256 --~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 256 --FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred --CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 002346778888875432211 11235678999999999999999887532222211 1456778887765
No 100
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.01 E-value=1.7e-05 Score=91.95 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=64.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC--CHHHHHHHHHHHhhhhhccCCCHH-----HHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP--DLQTIQNKLSSDLELEFKQNENVF-----QRAEKLR 250 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~l~ 250 (1728)
...+|+|++|+||||||+++|+..... +|+.++||.+.+.. ++.++++.|...+-....+..... ..+-...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999998754 89999999998887 788888888643222221111111 1111222
Q ss_pred HHH-HcCCcEEEEEeCCCCc
Q 000280 251 QRL-KNVKRVLVILDNIWKL 269 (1728)
Q Consensus 251 ~~l-~~~~~~LlVlDdv~~~ 269 (1728)
+++ ..+++++|++|++...
T Consensus 249 e~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHcCCCEEEEEEChHHH
Confidence 333 3579999999998654
No 101
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.00 E-value=3.8e-06 Score=72.06 Aligned_cols=57 Identities=32% Similarity=0.541 Sum_probs=31.4
Q ss_pred CCceeecCCCCCCccch-HhhccccccEEeccCcccccccCccccccCcccceeccCCC
Q 000280 606 KLEILSFRNSDIQQLPR-EIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDS 663 (1728)
Q Consensus 606 ~L~~L~Ls~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 663 (1728)
+|++|++++|.+..+|. .+..+++|++|++++| .++.+|++.+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555553 3455555555555555 455555555555555555555554
No 102
>PLN03150 hypothetical protein; Provisional
Probab=97.99 E-value=8.6e-06 Score=105.35 Aligned_cols=101 Identities=19% Similarity=0.361 Sum_probs=63.1
Q ss_pred ceEEEecCcCcc-ccCccccCCCcccEEEecCccCC--CccccccccCCceeecCCCCCC-ccchHhhccccccEEeccC
Q 000280 562 LRVVHFTRTCFL-SLPSSLVCLISLRTLSLEGCQVG--DVAIVGQLKKLEILSFRNSDIQ-QLPREIGQLVQLRLLDLRN 637 (1728)
Q Consensus 562 Lr~L~Ls~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~--~~~~i~~L~~L~~L~Ls~~~i~-~LP~~i~~L~~L~~L~L~~ 637 (1728)
++.|+|+++.+. .+|..|+.+.+|++|+|++|.+. .|..++.+.+|++|+|++|.+. .+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566667766665 46666777777777777777665 2456677777777777777665 5666677777777777776
Q ss_pred cccccccCcccccc-CcccceeccCCC
Q 000280 638 CRRLQAIAPNVISK-LSRLEELYMGDS 663 (1728)
Q Consensus 638 ~~~l~~lp~~~i~~-L~~L~~L~l~~~ 663 (1728)
|.....+|.. ++. +.++..+++.+|
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCC
Confidence 6434455554 443 234455555544
No 103
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.96 E-value=5.9e-05 Score=83.69 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=97.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1728)
...+.|+|..|+|||.|.+++++.......-..++|++ ..++...++..+... ....++..+.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~---------~~~~~~~~~~-- 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG---------EIEEFKDRLR-- 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT---------SHHHHHHHHC--
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc---------cchhhhhhhh--
Confidence 45789999999999999999999886432223467774 445555565555421 1233455553
Q ss_pred CcEEEEEeCCCCccc---ccc-ccCCCcccccccCCCCCCeEEEEEeCCchhh-cc-------cCCCccEEEccCCCHHH
Q 000280 257 KRVLVILDNIWKLLN---LDA-VGIPFGDVKKERNDDRSRCTVLLTSRNRDVL-CN-------DMNSQKFFLIEVLSYEE 324 (1728)
Q Consensus 257 ~~~LlVlDdv~~~~~---~~~-l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~-~~-------~~~~~~~~~l~~L~~~e 324 (1728)
.-=+|++||++.... |+. +..-+. .+ ...|-+||+|++..... .. .+...-++++++.+.++
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n----~~--~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~ 170 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFN----RL--IESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDED 170 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHH----HH--HHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHH----HH--HhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHH
Confidence 566899999987632 222 111111 11 12456899999654221 10 23345689999999999
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHH
Q 000280 325 AWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 364 (1728)
Q Consensus 325 a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a 364 (1728)
-.+++++++....- .-.+++++-|++.+.+..-.+..+-
T Consensus 171 r~~il~~~a~~~~~-~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 171 RRRILQKKAKERGI-ELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHHHHHHTT---S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 99999998842111 1235777888888877665554443
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=7.7e-05 Score=93.71 Aligned_cols=189 Identities=13% Similarity=0.202 Sum_probs=110.0
Q ss_pred CccccccchHHHHHHHHHHHhcCCce-EEEEEcCCcchHHHHHHHHHHHHHhcc-------------------CCCeeEE
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDK-------------------LFDKVVF 212 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~-~i~I~G~gG~GKTtLa~~~~~~~~~~~-------------------~f~~~~w 212 (1728)
.....++|.+..++.+..++...... .+.++|+.|+||||+|+.+++...-.. .|..+++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 34567899999999999999876554 568999999999999999998773211 1111223
Q ss_pred EEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc--cccccCCCcccccccCCCC
Q 000280 213 VEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN--LDAVGIPFGDVKKERNDDR 290 (1728)
Q Consensus 213 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~ 290 (1728)
++.+....+.++ +++...... .-..+++-++|+|+++.... .+.+...+.. -.
T Consensus 93 i~~~~~~~vd~i-r~l~~~~~~-----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-------pp 147 (527)
T PRK14969 93 VDAASNTQVDAM-RELLDNAQY-----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-------PP 147 (527)
T ss_pred eeccccCCHHHH-HHHHHHHhh-----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhC-------CC
Confidence 322222122111 111111110 00124677999999987632 3333333322 22
Q ss_pred CCeEEEEEeCC-chhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChH-HHHHHHHHH
Q 000280 291 SRCTVLLTSRN-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV-AIKTIANAL 367 (1728)
Q Consensus 291 ~g~~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~a~~L 367 (1728)
..+.+|++|.+ +.+..........+++.+++.++....+.+.+..... ...++.+..|++.++|.+- |+..+-.++
T Consensus 148 ~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-~~~~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 148 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-PFDATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred CCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45556655543 3332211222468899999999999888877632211 1224556789999999875 444443333
No 105
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.95 E-value=7.2e-06 Score=70.32 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=35.4
Q ss_pred cceEEEecCcCccccCc-cccCCCcccEEEecCccCCC--ccccccccCCceeecCCCCC
Q 000280 561 ELRVVHFTRTCFLSLPS-SLVCLISLRTLSLEGCQVGD--VAIVGQLKKLEILSFRNSDI 617 (1728)
Q Consensus 561 ~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~--~~~i~~L~~L~~L~Ls~~~i 617 (1728)
+|++|++++|.+..+|. .|..+.+|++|++++|.++. +..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45666666666666653 45666666666666666654 24566666666666666653
No 106
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=2.3e-06 Score=97.37 Aligned_cols=183 Identities=17% Similarity=0.153 Sum_probs=128.4
Q ss_pred CCCCCeEEEEEeccCCCCCcCCh-hHhcCCCcceEEEecCcCccc---cCccccCCCcccEEEecCccCCCc---ccccc
Q 000280 531 LECPKLSLFLLFAKYDSSLKIPD-LFFEGMNELRVVHFTRTCFLS---LPSSLVCLISLRTLSLEGCQVGDV---AIVGQ 603 (1728)
Q Consensus 531 ~~~~~Lr~L~l~~~~~~~~~i~~-~~f~~l~~Lr~L~Ls~~~i~~---lp~~i~~L~~Lr~L~L~~~~i~~~---~~i~~ 603 (1728)
.++++||...+.+. .....+. .....+.++|.||||+|-+.. +-.-...|++|+.|+|+.|.+..+ ..-..
T Consensus 118 sn~kkL~~IsLdn~--~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNY--RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCc--cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 46778888888765 2222221 355789999999999997654 333456789999999999998765 22347
Q ss_pred ccCCceeecCCCCCC--ccchHhhccccccEEeccCcccccccCccccccCcccceeccCCCccccccccCCCccchhhh
Q 000280 604 LKKLEILSFRNSDIQ--QLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVEL 681 (1728)
Q Consensus 604 L~~L~~L~Ls~~~i~--~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 681 (1728)
+.+|+.|.|+.|++. .+-.-.-.+++|..|+|.+|..+..-... ..-+..|++|++++|.+. ........
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li-------~~~~~~~~ 267 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI-------DFDQGYKV 267 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccc-------cccccccc
Confidence 889999999999887 22233456789999999998422221111 346788999999998874 23344567
Q ss_pred cCCCCCCeEEEEecccccC--chh------hhccccceeEEEEecccccc
Q 000280 682 KGLSKLTTLEIHIRDARIM--PQD------LISMKLEIFRMFIGNVVDWY 723 (1728)
Q Consensus 682 ~~L~~L~~L~l~~~~~~~~--~~~------~~~~~L~~l~~~~~~~~~~~ 723 (1728)
+.++.|+.|+++.+.+..+ |.. ..+.+|+.|.+..+...+|.
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 8899999999988876643 322 25677888877766665553
No 107
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00032 Score=88.20 Aligned_cols=186 Identities=14% Similarity=0.191 Sum_probs=111.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCce-EEEEEcCCcchHHHHHHHHHHHHHhccCCC---------------------ee
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDKLFD---------------------KV 210 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~-~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~---------------------~~ 210 (1728)
.....++|.+..++.|..++..+.+. .+.++|+.|+||||+|+.+++...-....+ .+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 34567899999999999999876655 468999999999999999998764211110 11
Q ss_pred EEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCccccc
Q 000280 211 VFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKK 284 (1728)
Q Consensus 211 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~ 284 (1728)
+.++.+....+. .+..+++... .+++-++|+|+++.. ...+.+...+..
T Consensus 90 ieidaas~~gvd----------------------~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE--- 144 (584)
T PRK14952 90 VELDAASHGGVD----------------------DTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE--- 144 (584)
T ss_pred EEeccccccCHH----------------------HHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc---
Confidence 222221111111 1122222221 246669999999866 233343333332
Q ss_pred ccCCCCCCeEEEE-EeCCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChH-HHHH
Q 000280 285 ERNDDRSRCTVLL-TSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV-AIKT 362 (1728)
Q Consensus 285 ~~~~~~~g~~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~ 362 (1728)
-...+.+|+ ||....+..........|++..++.++..+.+.+.+..... .-.++.+..|++..+|-+- |+..
T Consensus 145 ----pp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i~~~al~~Ia~~s~GdlR~aln~ 219 (584)
T PRK14952 145 ----PPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VVDDAVYPLVIRAGGGSPRDTLSV 219 (584)
T ss_pred ----CCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 233455554 54444444322233568999999999999888887642211 1124567789999999874 5555
Q ss_pred HHHHHh
Q 000280 363 IANALK 368 (1728)
Q Consensus 363 ~a~~L~ 368 (1728)
+-.++.
T Consensus 220 Ldql~~ 225 (584)
T PRK14952 220 LDQLLA 225 (584)
T ss_pred HHHHHh
Confidence 544443
No 108
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00016 Score=91.55 Aligned_cols=182 Identities=16% Similarity=0.180 Sum_probs=107.9
Q ss_pred cCccccccchHHHHHHHHHHHhcCC-ceEEEEEcCCcchHHHHHHHHHHHHHhccCCC----------------eeEEEE
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD----------------KVVFVE 214 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~----------------~~~wv~ 214 (1728)
|.....++|.+..++.|..++..++ .+.+.++|+.|+||||+|+.+++..--....+ .++++.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieid 93 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMD 93 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEe
Confidence 3445678999999999999998655 45668999999999999999998763211000 011111
Q ss_pred ECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCC
Q 000280 215 VTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERND 288 (1728)
Q Consensus 215 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 288 (1728)
...... .+.++.+.+.+. .+++-++|+|+++... .++.+...+..
T Consensus 94 aasn~~----------------------vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE------- 144 (725)
T PRK07133 94 AASNNG----------------------VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE------- 144 (725)
T ss_pred ccccCC----------------------HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc-------
Confidence 111011 111223333322 2466799999997662 34444332222
Q ss_pred CCCCeE-EEEEeCCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000280 289 DRSRCT-VLLTSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1728)
Q Consensus 289 ~~~g~~-ilvTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1728)
-...+. |++|++...+..........+++.+++.++....+...+..... ....+.+..|++.++|-+--+..+
T Consensus 145 PP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 145 PPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI-SYEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred CCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 123344 44555555544322333468999999999999888876532111 122456788999999977544333
No 109
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00015 Score=91.63 Aligned_cols=199 Identities=11% Similarity=0.136 Sum_probs=111.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhccCCC--eeEEEEECCCCCHHHHHHHHH
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD--KVVFVEVTQTPDLQTIQNKLS 229 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~ 229 (1728)
.....++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+++...-..... +..+-.. ..-.-...|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c----g~c~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC----GVGEHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC----cccHHHHHHh
Confidence 4456789999999999999986654 4788999999999999999999763211110 0000000 0001111111
Q ss_pred HHhhhhh-----ccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEEE
Q 000280 230 SDLELEF-----KQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLT 298 (1728)
Q Consensus 230 ~~l~~~~-----~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilvT 298 (1728)
..-.... ...... +.++.+...+. .+++-++|+|+++... ..+.+...+.+ -...+++|++
T Consensus 97 ~g~h~Dv~e~~a~s~~gv-d~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe-------Pp~~~~fIl~ 168 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGV-DDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE-------PPPHVKFIFA 168 (598)
T ss_pred cCCCCceEEecccccCCH-HHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh-------CCCCeEEEEE
Confidence 1111000 000011 11222222221 2456689999997763 23333332322 2345666554
Q ss_pred e-CCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHH
Q 000280 299 S-RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 364 (1728)
Q Consensus 299 t-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a 364 (1728)
| ....+..........+++..++.++....+.+.+..... .-.++.+..|++.++|.+.-+...-
T Consensus 169 tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 169 TTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 444443322233568999999999999999887742211 1224667889999999986554443
No 110
>PLN03150 hypothetical protein; Provisional
Probab=97.91 E-value=2.2e-05 Score=101.67 Aligned_cols=109 Identities=19% Similarity=0.275 Sum_probs=91.2
Q ss_pred CeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCcc-ccCccccCCCcccEEEecCccCC--CccccccccCCceee
Q 000280 535 KLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFL-SLPSSLVCLISLRTLSLEGCQVG--DVAIVGQLKKLEILS 611 (1728)
Q Consensus 535 ~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~--~~~~i~~L~~L~~L~ 611 (1728)
.++.|.+.++ .-...+|.. |..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+. .|..+++|.+|++|+
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCC-CccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 4777888777 344466765 588999999999999997 79999999999999999999987 368899999999999
Q ss_pred cCCCCCC-ccchHhhcc-ccccEEeccCcccccccC
Q 000280 612 FRNSDIQ-QLPREIGQL-VQLRLLDLRNCRRLQAIA 645 (1728)
Q Consensus 612 Ls~~~i~-~LP~~i~~L-~~L~~L~L~~~~~l~~lp 645 (1728)
|++|.+. .+|..++.+ .++..+++.+|..+...|
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999887 889998764 577889999886554443
No 111
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00021 Score=88.26 Aligned_cols=186 Identities=11% Similarity=0.170 Sum_probs=110.1
Q ss_pred CccccccchHHHHHHHHHHHhcCCce-EEEEEcCCcchHHHHHHHHHHHHHhccC------------------C-CeeEE
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDKL------------------F-DKVVF 212 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~-~i~I~G~gG~GKTtLa~~~~~~~~~~~~------------------f-~~~~w 212 (1728)
.....++|-+...+.+..++..+... +..++|+.|+||||+|+.+++..--... + ..++.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 34567899999999999999866554 5689999999999999999987631111 0 01222
Q ss_pred EEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCC
Q 000280 213 VEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDR 290 (1728)
Q Consensus 213 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 290 (1728)
++.+....+.++.. ++.... ..-..+++-++|+|+++... ..+.+...+.. -.
T Consensus 91 ldaas~~gId~IRe-lie~~~-----------------~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE-------pp 145 (535)
T PRK08451 91 MDAASNRGIDDIRE-LIEQTK-----------------YKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE-------PP 145 (535)
T ss_pred eccccccCHHHHHH-HHHHHh-----------------hCcccCCeEEEEEECcccCCHHHHHHHHHHHhh-------cC
Confidence 22211111222211 111100 00001466799999998763 23333333322 23
Q ss_pred CCeEEEEEeCCc-hhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHH
Q 000280 291 SRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 364 (1728)
Q Consensus 291 ~g~~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a 364 (1728)
..+++|++|.+. .+..........+++.+++.++....+...+..... .-.++.+..|++.++|.+.-+....
T Consensus 146 ~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 146 SYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-SYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred CceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 456667666553 222211223568999999999999988877642211 1225678899999999985554443
No 112
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.0002 Score=87.36 Aligned_cols=182 Identities=12% Similarity=0.196 Sum_probs=105.2
Q ss_pred CccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhc------cCCCe-eEEEEECCCCCHHHH
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED------KLFDK-VVFVEVTQTPDLQTI 224 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~------~~f~~-~~wv~~~~~~~~~~~ 224 (1728)
.....++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+++..... ..|.. ++.++........++
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 93 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI 93 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH
Confidence 3456789999999999999986554 588899999999999999998876421 11211 111111111111111
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEEEe-CC
Q 000280 225 QNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTS-RN 301 (1728)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilvTt-R~ 301 (1728)
.++.+++... .. .+++-++|+|+++... .++.+...+.. ....+.+|++| +.
T Consensus 94 -~~l~~~~~~~----------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~-------~~~~~~~Il~~~~~ 148 (367)
T PRK14970 94 -RNLIDQVRIP----------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEE-------PPAHAIFILATTEK 148 (367)
T ss_pred -HHHHHHHhhc----------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhC-------CCCceEEEEEeCCc
Confidence 1122211100 01 1356689999997653 23443222221 12344555554 33
Q ss_pred chhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHH
Q 000280 302 RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1728)
Q Consensus 302 ~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1728)
..+..........+++.++++++....+.+.+....- .-.++.++.|++.++|-+-.+
T Consensus 149 ~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 149 HKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred ccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHH
Confidence 3333212223457899999999999888887632111 112467888999999976533
No 113
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.90 E-value=2.8e-07 Score=109.95 Aligned_cols=177 Identities=22% Similarity=0.258 Sum_probs=129.7
Q ss_pred ccCceEEEEcCCCCCCCCCCCCCC-CCeEEEEEeccCCCCCcCChhHhcC----------CCcceEEEecCcCccccCcc
Q 000280 510 TQKDSIAISLPNRDIDELPERLEC-PKLSLFLLFAKYDSSLKIPDLFFEG----------MNELRVVHFTRTCFLSLPSS 578 (1728)
Q Consensus 510 ~~~~~~~lsl~~~~~~~l~~~~~~-~~Lr~L~l~~~~~~~~~i~~~~f~~----------l~~Lr~L~Ls~~~i~~lp~~ 578 (1728)
|-+..|++-+.++++........+ ..|++|+..+. ....+.+|.. -..|.+-++++|.+..+-.+
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~S----l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~S 182 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNS----LDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDES 182 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhcc----HHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHH
Confidence 445668888888777653322222 24555555432 1111111111 24677888899988888888
Q ss_pred ccCCCcccEEEecCccCCCccccccccCCceeecCCCCCCccchH-hhccccccEEeccCcccccccCccccccCcccce
Q 000280 579 LVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPRE-IGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEE 657 (1728)
Q Consensus 579 i~~L~~Lr~L~L~~~~i~~~~~i~~L~~L~~L~Ls~~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~ 657 (1728)
+.-+.+|+.|+|++|++.+...+..|.+|++|||++|.+..+|.- .... +|+.|++++| .++.+-. |.+|.+|+.
T Consensus 183 Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~g--ie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLRG--IENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhhh--HHhhhhhhc
Confidence 888999999999999999888999999999999999999988862 2233 4999999999 6887744 899999999
Q ss_pred eccCCCccccccccCCCccchhhhcCCCCCCeEEEEecccccCc
Q 000280 658 LYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMP 701 (1728)
Q Consensus 658 L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 701 (1728)
|+++.|.+. +...+.-|..|..|+.|.+.+|.+-.-|
T Consensus 259 LDlsyNll~-------~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 259 LDLSYNLLS-------EHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cchhHhhhh-------cchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 999998875 4555677788888999999988765443
No 114
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=0.0011 Score=77.06 Aligned_cols=199 Identities=14% Similarity=0.180 Sum_probs=126.8
Q ss_pred ccccccchHHHHHHHHHHHh----cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHH
Q 000280 154 AYEQFDSRMKIFQNIMEVLK----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLS 229 (1728)
Q Consensus 154 ~~~~~~gR~~~~~~l~~~L~----~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (1728)
.+...+||+.+++.+.+++. ....+.+-|.|-+|.|||.+...++.+......--.+++++...-.....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 34568999999999999987 34677899999999999999999999885432223568888777667778888888
Q ss_pred HHhhhhhccCCCHHHHHHHHHHHHHcCC-cEEEEEeCCCCccc--ccccc--CCCcccccccCCCCCCeEEEEEeCCch-
Q 000280 230 SDLELEFKQNENVFQRAEKLRQRLKNVK-RVLVILDNIWKLLN--LDAVG--IPFGDVKKERNDDRSRCTVLLTSRNRD- 303 (1728)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~~LlVlDdv~~~~~--~~~l~--~~~~~~~~~~~~~~~g~~ilvTtR~~~- 303 (1728)
..+-..........+....+.+..++.+ -+|+|+|.++.... -..+. ..||. -.++++|+.---..
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~--------lp~sr~iLiGiANsl 299 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK--------LPNSRIILIGIANSL 299 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc--------CCcceeeeeeehhhh
Confidence 7773322212233555566666666444 78999999876521 11111 22332 34555554321110
Q ss_pred ------hh--cc-cCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHH
Q 000280 304 ------VL--CN-DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1728)
Q Consensus 304 ------v~--~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1728)
.. .. ..-....+..+|.+.++-.+.|..+.............++-+|+++.|.---+
T Consensus 300 DlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDl 365 (529)
T KOG2227|consen 300 DLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDL 365 (529)
T ss_pred hHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhH
Confidence 00 10 12235678899999999999999988544433443445555666665544333
No 115
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=6.4e-07 Score=96.18 Aligned_cols=187 Identities=17% Similarity=0.113 Sum_probs=117.5
Q ss_pred CCccEEEEecCCCcccccchhHHHhcCCCCceEeccccccee-eeccccccCcccCCCcCCCCCCCCCccccCccceeec
Q 000280 1376 CNLYYLRIENCNKLSNIFPWSMLERLQNLDDLRVVCCDSVQE-IFELRALNGWDTHNRTTTQLPETIPSFVFPQLTFLIL 1454 (1728)
Q Consensus 1376 ~~L~~L~i~~C~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 1454 (1728)
+.|++|++++ ..++.-.-..++..|..|+.|.+.+.. +.+ |.. .+..=.+|+.|+|
T Consensus 185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~---------------------~iAkN~~L~~lnl 241 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVN---------------------TIAKNSNLVRLNL 241 (419)
T ss_pred hhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccc-cCcHHHH---------------------HHhccccceeecc
Confidence 4688999975 455543445678888999999888772 322 211 1122357888999
Q ss_pred cCCCCcccccCCcccCCCcccceEEEeccccchhhcccccccccCCCCCcCCccccccccccccccccccceeecccccc
Q 000280 1455 RGLPRLKSFYPGVHISEWPVLKKLVVWECAEVELLASEFFGLQETPANSQHDINVPQPLFSIYKIGFRCLEDLELSTLPK 1534 (1728)
Q Consensus 1455 ~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~c~~ 1534 (1728)
+.|..+++........+|+.|.+|+++-|.--+..... .
T Consensus 242 sm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv-----------------------------------------~ 280 (419)
T KOG2120|consen 242 SMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV-----------------------------------------A 280 (419)
T ss_pred ccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH-----------------------------------------H
Confidence 99988888876666677888888888888432211000 0
Q ss_pred cccccCCCCCcccccCCccEEEEecCCCcccccc-hhhhhhcccccEEEEccccchhhhccccccccccccccccccccc
Q 000280 1535 LLHLWKGKSKLSHVFQNLTTLDVSICDGLINLVT-LAAAESLVKLARMKIAACGKMEKVIQQVGAEVVEEDSIATFNQLQ 1613 (1728)
Q Consensus 1535 l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~-~~~~~~L~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~L~ 1613 (1728)
+.++ -++|+.|++++|.+--..-. ..+++.+++|.+|++++|.++..-... ....|+.|+
T Consensus 281 V~hi----------se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~---------~~~kf~~L~ 341 (419)
T KOG2120|consen 281 VAHI----------SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ---------EFFKFNYLQ 341 (419)
T ss_pred Hhhh----------chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH---------HHHhcchhe
Confidence 0011 14666677766654322211 235688999999999999887542222 134689999
Q ss_pred eeccccCCCccccccCCCcceeeCCCccEEEEecc
Q 000280 1614 YLGIDCLPSLTCFCFGRSKNKLEFPSLEQVVVREC 1648 (1728)
Q Consensus 1614 ~L~L~~lp~L~~~~~~~~~~~~~~psL~~l~i~~C 1648 (1728)
+|.|..|.-+-.--. -..-+.|+|.+|+|.+|
T Consensus 342 ~lSlsRCY~i~p~~~---~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETL---LELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCCChHHe---eeeccCcceEEEEeccc
Confidence 999988854422110 11223699999999987
No 116
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=0.0001 Score=90.85 Aligned_cols=170 Identities=16% Similarity=0.148 Sum_probs=106.7
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1728)
...+.|+|..|+|||+|++++++.......-..+++++ ..++...+...++... +....+++++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc--
Confidence 35689999999999999999999775433334556664 3456666666654311 12234444443
Q ss_pred CcEEEEEeCCCCcc---cc-ccccCCCcccccccCCCCCCeEEEEEeCCch-hhc-------ccCCCccEEEccCCCHHH
Q 000280 257 KRVLVILDNIWKLL---NL-DAVGIPFGDVKKERNDDRSRCTVLLTSRNRD-VLC-------NDMNSQKFFLIEVLSYEE 324 (1728)
Q Consensus 257 ~~~LlVlDdv~~~~---~~-~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~-v~~-------~~~~~~~~~~l~~L~~~e 324 (1728)
..-+||+||+.... .+ +.+...+.. + ...|..||+|+.... ... ......-++.+++++.++
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~----~--~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~ 279 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNN----F--IENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKT 279 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHH----H--HHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHH
Confidence 44588999997652 12 222221211 1 123446888876442 111 023345678899999999
Q ss_pred HHHHHHHHhCCCCC-CCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000280 325 AWCLFEKIVGDSAK-ASDFRVIADEIVRRCGGLPVAIKTIANAL 367 (1728)
Q Consensus 325 a~~Lf~~~~~~~~~-~~~~~~~~~~i~~~c~glPLai~~~a~~L 367 (1728)
-.+++++++..... ..-.++++..|++.++|.|-.+.-+...+
T Consensus 280 r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 280 ATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 99999998843211 12336788999999999998776665443
No 117
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00021 Score=90.47 Aligned_cols=203 Identities=16% Similarity=0.200 Sum_probs=109.8
Q ss_pred CccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEE-ECCCCCHHHHHHHHHH
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVE-VTQTPDLQTIQNKLSS 230 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~ 230 (1728)
.....++|.+..+..|.+++..+.+ +.+.++|+.|+||||+|+.+++...-...++...|.. +......-.....+..
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 3456789999999999999886655 4588999999999999999998874321111111110 0000000011111111
Q ss_pred Hhhhhh---cc-CCCHHHHHHHHHHHH----HcCCcEEEEEeCCCCccc--cccccCCCcccccccCCCCCCeEEEE-Ee
Q 000280 231 DLELEF---KQ-NENVFQRAEKLRQRL----KNVKRVLVILDNIWKLLN--LDAVGIPFGDVKKERNDDRSRCTVLL-TS 299 (1728)
Q Consensus 231 ~l~~~~---~~-~~~~~~~~~~l~~~l----~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~g~~ilv-Tt 299 (1728)
.-..+. +. .....+.+..+.+.+ ..+++-++|+|+++.... .+.+...+.. -...+.+|+ |+
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe-------Pp~~tv~IL~t~ 165 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE-------PPPHAIFIFATT 165 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC-------CCCCeEEEEEeC
Confidence 000000 00 001012222233333 124666899999987632 3333332322 123445554 44
Q ss_pred CCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChH-HHHHH
Q 000280 300 RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV-AIKTI 363 (1728)
Q Consensus 300 R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 363 (1728)
+...+..........+++.+++.++....+.+.+..... .-.++.++.|++.++|..- |+..+
T Consensus 166 ~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 166 ELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI-QIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred ChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 444443322334578999999999988888876632111 1225668889999999664 44433
No 118
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.85 E-value=0.00013 Score=82.40 Aligned_cols=174 Identities=10% Similarity=0.123 Sum_probs=99.3
Q ss_pred ccccc-chHH-HHHHHHHHHh-cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHH
Q 000280 155 YEQFD-SRMK-IFQNIMEVLK-DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSD 231 (1728)
Q Consensus 155 ~~~~~-gR~~-~~~~l~~~L~-~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 231 (1728)
...|+ |+.. .+..+.++.. ....+.+.|+|..|+|||+||+.+++..... . ..+++++..+.. ..
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~-~~~~~i~~~~~~------~~---- 84 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-G-RNARYLDAASPL------LA---- 84 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-C-CcEEEEehHHhH------HH----
Confidence 34444 4433 3344444443 2345688999999999999999999987422 1 234555543311 00
Q ss_pred hhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccccc--cccCCCcccccccCCCCCCe-EEEEEeCCchhhcc-
Q 000280 232 LELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLD--AVGIPFGDVKKERNDDRSRC-TVLLTSRNRDVLCN- 307 (1728)
Q Consensus 232 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~--~l~~~~~~~~~~~~~~~~g~-~ilvTtR~~~v~~~- 307 (1728)
+ ... ...-+||+||++....+. .+...+.. . ...+. .||+|++.......
T Consensus 85 ~------------------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~----~--~~~~~~~vl~~~~~~~~~~~l 138 (227)
T PRK08903 85 F------------------DFD--PEAELYAVDDVERLDDAQQIALFNLFNR----V--RAHGQGALLVAGPAAPLALPL 138 (227)
T ss_pred H------------------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHH----H--HHcCCcEEEEeCCCCHHhCCC
Confidence 0 011 234478899997653221 12111211 0 12233 46677665432211
Q ss_pred ------cCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000280 308 ------DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANAL 367 (1728)
Q Consensus 308 ------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~~L 367 (1728)
.......++++++++++-..++.+.+.... ..--+++.+.+++...|.+..+..+...+
T Consensus 139 ~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 139 REDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 112236899999999987777776552211 12235678889999999998877776655
No 119
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00022 Score=93.29 Aligned_cols=179 Identities=12% Similarity=0.138 Sum_probs=108.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCce-EEEEEcCCcchHHHHHHHHHHHHHhccCC---------------------Cee
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDKLF---------------------DKV 210 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~-~i~I~G~gG~GKTtLa~~~~~~~~~~~~f---------------------~~~ 210 (1728)
.....++|.+..++.|..++....+. .+.++|..|+||||+|+.+++...-.+.. ..+
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv 91 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDV 91 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcE
Confidence 34567899999999999999876654 57899999999999999999987421111 012
Q ss_pred EEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHH----HcCCcEEEEEeCCCCcc--ccccccCCCccccc
Q 000280 211 VFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRL----KNVKRVLVILDNIWKLL--NLDAVGIPFGDVKK 284 (1728)
Q Consensus 211 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~ 284 (1728)
++++......+.++ +.+++++ ..+++-++|||+++... ..+.+...+.+
T Consensus 92 ~eidaas~~~Vd~i----------------------R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE--- 146 (824)
T PRK07764 92 TEIDAASHGGVDDA----------------------RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE--- 146 (824)
T ss_pred EEecccccCCHHHH----------------------HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC---
Confidence 22222111111111 1222221 12466689999998772 33333333332
Q ss_pred ccCCCCCCeEEEEEe-CCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000280 285 ERNDDRSRCTVLLTS-RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 361 (1728)
Q Consensus 285 ~~~~~~~g~~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 361 (1728)
-...+.+|++| ....+..........|++..++.++..+.+.+.+..... .-..+....|++.++|.+..+.
T Consensus 147 ----pP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-~id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 147 ----PPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-PVEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred ----CCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 23455555555 444444322334578999999999999888887632211 1124556789999999884433
No 120
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.84 E-value=0.00018 Score=87.55 Aligned_cols=178 Identities=15% Similarity=0.198 Sum_probs=101.0
Q ss_pred cccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCH
Q 000280 155 YEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDL 221 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~~-------------~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 221 (1728)
...+.|+++.++++.+.+.- ...+.|.++|++|+|||++|+++++... .. |+.+..
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh----
Confidence 45678999999999887641 2356799999999999999999998763 11 333321
Q ss_pred HHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc------------c-ccccCCCcccccccCC
Q 000280 222 QTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN------------L-DAVGIPFGDVKKERND 288 (1728)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~------------~-~~l~~~~~~~~~~~~~ 288 (1728)
.++ ..... . ........+.+......+.+|+||+++.... + ..+...+.. .+. ..
T Consensus 199 ~~l----~~~~~-----g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~-ld~-~~ 266 (389)
T PRK03992 199 SEL----VQKFI-----G-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE-MDG-FD 266 (389)
T ss_pred HHH----hHhhc-----c-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHh-ccc-cC
Confidence 111 11110 0 1122333444444445778999999986410 0 001100100 000 00
Q ss_pred CCCCeEEEEEeCCchhhccc-C---CCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000280 289 DRSRCTVLLTSRNRDVLCND-M---NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1728)
Q Consensus 289 ~~~g~~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1728)
...+..||.||......... . .....+.++..+.++..++|+.++.......+. ....+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCC
Confidence 22356677777654322211 1 234679999999999999999887532221111 1345777776654
No 121
>PRK05642 DNA replication initiation factor; Validated
Probab=97.82 E-value=0.00022 Score=80.22 Aligned_cols=156 Identities=16% Similarity=0.201 Sum_probs=94.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1728)
...+.|+|..|+|||.||+++++....+ -..++|++..+ +... ...+.+.+. +
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~-~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR------------------GPELLDNLE-Q 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh------------------hHHHHHhhh-h
Confidence 3678999999999999999999877533 34577876432 2110 012344444 2
Q ss_pred CcEEEEEeCCCCc---ccccc-ccCCCcccccccCCCCCCeEEEEEeCCchhhcc--------cCCCccEEEccCCCHHH
Q 000280 257 KRVLVILDNIWKL---LNLDA-VGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN--------DMNSQKFFLIEVLSYEE 324 (1728)
Q Consensus 257 ~~~LlVlDdv~~~---~~~~~-l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~--------~~~~~~~~~l~~L~~~e 324 (1728)
-. +||+||+... ..|+. +...+.. + ...|..||+|++.....-. ......++++++++.++
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~----~--~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNR----L--RDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDED 170 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHH----H--HhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHH
Confidence 22 6888999743 24433 2221211 1 2345678888875432111 12234678999999999
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000280 325 AWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANAL 367 (1728)
Q Consensus 325 a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~~L 367 (1728)
-.+.+++++.... -.-.+++.+-|++++.|-.-.+..+-..|
T Consensus 171 ~~~il~~ka~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 171 KLRALQLRASRRG-LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999986663211 12225778889998888766555444333
No 122
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.1e-06 Score=94.44 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=83.2
Q ss_pred eecccccccccccCCCCccccccCCCCCccccccccEEEeccCCCCcccCChhhhhhcCCCcEEEEeccCCcceeeeccc
Q 000280 1182 VVGFHDIKDLKLSQFPHLKEIWHGQALNVSIFSNLRSLGVDNCTNMSSAIPANLLRCLNNLERLKVRNCDSLEEVFHLED 1261 (1728)
Q Consensus 1182 ~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~ 1261 (1728)
+.+|..|+.|.|.+..--..|. ..+..-.+|+.|+++.|..++.....-++.+++.|++|+++.|...++...+
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~----~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv-- 279 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIV----NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV-- 279 (419)
T ss_pred HHHHHhhhhccccccccCcHHH----HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH--
Confidence 4567777777776654211111 1122337899999999999987655667889999999999999876655331
Q ss_pred cCCCCCcCCcccccceEecccCCCcceeccCcccccccccccceEeecCCCcce
Q 000280 1262 VNADEHFGPLFPKLYELELIDLPKLKRFCNFKWNIIELLSLSSLWIENCPNMET 1315 (1728)
Q Consensus 1262 ~~~~~~~~~~lp~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~C~~L~~ 1315 (1728)
.+.++-+.|+.|+|++|..--.......-...+|.|.+|++++|..++.
T Consensus 280 -----~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 280 -----AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred -----HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 3345577899999999853211111011234689999999999988775
No 123
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.79 E-value=2.4e-06 Score=109.74 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=22.1
Q ss_pred ccEEEEecCCCcccccchhhhhhcccccEEEEccccchh
Q 000280 1552 LTTLDVSICDGLINLVTLAAAESLVKLARMKIAACGKME 1590 (1728)
Q Consensus 1552 L~~L~i~~C~~l~~l~~~~~~~~L~~L~~L~i~~C~~l~ 1590 (1728)
++.|++..|...+.-.......++..++.+++.+|+.+.
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 667777776666655333333335556666666666553
No 124
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.79 E-value=0.00017 Score=95.65 Aligned_cols=183 Identities=11% Similarity=0.114 Sum_probs=104.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccC----CCeeEE-EEECCCCCHHHHHHH
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKL----FDKVVF-VEVTQTPDLQTIQNK 227 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~~ 227 (1728)
.....++||+.++..+++.|.......+.++|.+|+||||+|+.++++...... .+..+| ++++.-.
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~-------- 255 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ-------- 255 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh--------
Confidence 344678999999999999998766677789999999999999999998743221 122232 3222100
Q ss_pred HHHHhhhhhccCCCHHHHHHHHHHHHH-cCCcEEEEEeCCCCccc-------cc--cccCCCcccccccCCCCCCeEEEE
Q 000280 228 LSSDLELEFKQNENVFQRAEKLRQRLK-NVKRVLVILDNIWKLLN-------LD--AVGIPFGDVKKERNDDRSRCTVLL 297 (1728)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~~-------~~--~l~~~~~~~~~~~~~~~~g~~ilv 297 (1728)
+ +.. . ....++....+.+.+. .+++.+|++|+++.... .+ .+..| . + ....-++|-
T Consensus 256 -a---g~~-~-~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp--~-----l-~~G~l~~Ig 321 (852)
T TIGR03345 256 -A---GAS-V-KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKP--A-----L-ARGELRTIA 321 (852)
T ss_pred -c---ccc-c-chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhH--H-----h-hCCCeEEEE
Confidence 0 000 0 1112233344444443 24789999999876521 11 11111 1 1 223345665
Q ss_pred EeCCchhhc------ccCCCccEEEccCCCHHHHHHHHHHHhC---CCCCCCchHHHHHHHHHHhCCCh
Q 000280 298 TSRNRDVLC------NDMNSQKFFLIEVLSYEEAWCLFEKIVG---DSAKASDFRVIADEIVRRCGGLP 357 (1728)
Q Consensus 298 TtR~~~v~~------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~i~~~c~glP 357 (1728)
||...+... ........+.+++++.+++.++++.... ....-.-.+++...+++.+.+..
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 555432211 0112345899999999999999765542 11111223455666777665543
No 125
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00038 Score=85.88 Aligned_cols=184 Identities=13% Similarity=0.141 Sum_probs=106.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhcc---------------------CCCee
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK---------------------LFDKV 210 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~---------------------~f~~~ 210 (1728)
.....++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+++...-.. +++ +
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 3456789999999999999986654 5678999999999999999998763210 111 1
Q ss_pred EEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccCCCcccccccCC
Q 000280 211 VFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERND 288 (1728)
Q Consensus 211 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 288 (1728)
+++.......+.++. ++.+.+ ...-..+++-++|+|+++... ..+.+...+.+
T Consensus 93 ~~i~g~~~~gid~ir-~i~~~l-----------------~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe------- 147 (451)
T PRK06305 93 LEIDGASHRGIEDIR-QINETV-----------------LFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE------- 147 (451)
T ss_pred EEeeccccCCHHHHH-HHHHHH-----------------HhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc-------
Confidence 112111111111111 111111 111012467789999987652 22333222222
Q ss_pred CCCCeEEEEEeC-CchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChH-HHHHH
Q 000280 289 DRSRCTVLLTSR-NRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV-AIKTI 363 (1728)
Q Consensus 289 ~~~g~~ilvTtR-~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 363 (1728)
....+.+|++|. ...+..........+++.++++++....+.+.+.... ..-.++.++.|++.++|.+- |+..+
T Consensus 148 p~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 148 PPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-IETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 223555666553 3333221222356799999999999988887763211 11235668889999999764 43333
No 126
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.79 E-value=4.9e-05 Score=88.73 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=64.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC--CCHHHHHHHHHHHhhhhhccCCCH--HH---H-HHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT--PDLQTIQNKLSSDLELEFKQNENV--FQ---R-AEK 248 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~--~~---~-~~~ 248 (1728)
-..++|+|++|+|||||++.+++.... ++|+..+||.+.+. .++.++++.+...+-...-+.... .. . .+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 358999999999999999999998864 48999999999866 689999999854333222111111 11 1 112
Q ss_pred HHHHHHcCCcEEEEEeCCCCc
Q 000280 249 LRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 249 l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
..+...++++++|++|++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 222223579999999999754
No 127
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=5.2e-05 Score=89.07 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=55.0
Q ss_pred ccCccceeeccCCCCcccccCCcccCCCcccceEEEeccccchhhcccccccccCCCCCcCCcccccccccccccccccc
Q 000280 1445 VFPQLTFLILRGLPRLKSFYPGVHISEWPVLKKLVVWECAEVELLASEFFGLQETPANSQHDINVPQPLFSIYKIGFRCL 1524 (1728)
Q Consensus 1445 ~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L 1524 (1728)
.++.++.|++++| +|+++|. ..++|++|.+++|.+++.+|.... ++|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~~LP---------------------------~nL 96 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-----LPNELTEITIENCNNLTTLPGSIP---------------------------EGL 96 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-----CCCCCcEEEccCCCCcccCCchhh---------------------------hhh
Confidence 4688999999999 8999972 256899999999999998864211 578
Q ss_pred ceeecccccccccccCCCCCcccccCCccEEEEe
Q 000280 1525 EDLELSTLPKLLHLWKGKSKLSHVFQNLTTLDVS 1558 (1728)
Q Consensus 1525 ~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~ 1558 (1728)
+.|.+++|+.+..++ ++|+.|++.
T Consensus 97 e~L~Ls~Cs~L~sLP----------~sLe~L~L~ 120 (426)
T PRK15386 97 EKLTVCHCPEISGLP----------ESVRSLEIK 120 (426)
T ss_pred hheEccCcccccccc----------cccceEEeC
Confidence 899999988776442 567777765
No 128
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.78 E-value=0.00018 Score=95.04 Aligned_cols=159 Identities=12% Similarity=0.168 Sum_probs=95.3
Q ss_pred ccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCC----CeeEEEEECCCCCHHHHHHHHH
Q 000280 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF----DKVVFVEVTQTPDLQTIQNKLS 229 (1728)
Q Consensus 154 ~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~ 229 (1728)
....++||+++++.+++.|......-+.++|.+|+|||++|+.++++.....-. +..+|. + +...+.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~---- 250 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL---- 250 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh----
Confidence 345789999999999999986666778899999999999999999987543211 333432 1 111111
Q ss_pred HHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc----------cccccCCCcccccccCCCCCCeEEEEEe
Q 000280 230 SDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN----------LDAVGIPFGDVKKERNDDRSRCTVLLTS 299 (1728)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----------~~~l~~~~~~~~~~~~~~~~g~~ilvTt 299 (1728)
... . . ....++....+.+.+.+.++.+|++|+++.... ...+.. |. + ....-++|-+|
T Consensus 251 a~~--~-~-~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~--~~-----l-~~g~i~~IgaT 318 (731)
T TIGR02639 251 AGT--K-Y-RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLK--PA-----L-SSGKLRCIGST 318 (731)
T ss_pred hhc--c-c-cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHH--HH-----H-hCCCeEEEEec
Confidence 100 0 0 123345556666666545789999999875421 111111 11 1 11223455444
Q ss_pred CCchh----h--cccCCCccEEEccCCCHHHHHHHHHHHh
Q 000280 300 RNRDV----L--CNDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1728)
Q Consensus 300 R~~~v----~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 333 (1728)
...+. . .........+.++.++.++..+++++..
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 43211 1 0011123579999999999999998765
No 129
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00045 Score=85.73 Aligned_cols=182 Identities=14% Similarity=0.149 Sum_probs=107.1
Q ss_pred CccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhc-------------------cCCCeeEE
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED-------------------KLFDKVVF 212 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~-------------------~~f~~~~w 212 (1728)
.....++|.+..+..+..++..... +.+.++|+.|+||||+|+.+++...-. ..|..+++
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 3456788999999999999986554 456789999999999999999876310 00111222
Q ss_pred EEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCccccccc
Q 000280 213 VEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKER 286 (1728)
Q Consensus 213 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~ 286 (1728)
++.+....+. .++.+.+... .+++-++|+|+++... ..+.+...+..
T Consensus 93 idaas~~gvd----------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe----- 145 (486)
T PRK14953 93 IDAASNRGID----------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE----- 145 (486)
T ss_pred EeCccCCCHH----------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc-----
Confidence 2221111111 1122222221 2467799999998652 23333222222
Q ss_pred CCCCCCeEEEE-EeCCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHH
Q 000280 287 NDDRSRCTVLL-TSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 364 (1728)
Q Consensus 287 ~~~~~g~~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a 364 (1728)
......+|+ ||+...+..........+.+.+++.++....+.+.+..... .-.++.+..|++.++|.+..+....
T Consensus 146 --pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 146 --PPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred --CCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 223344554 44433333211223457899999999999888887632111 2224667789999999876554444
No 130
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.76 E-value=0.00013 Score=80.03 Aligned_cols=183 Identities=16% Similarity=0.160 Sum_probs=114.7
Q ss_pred cCccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCee-EEEEECCCCCHHHHHHHHHH
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKV-VFVEVTQTPDLQTIQNKLSS 230 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~-~wv~~~~~~~~~~~~~~i~~ 230 (1728)
|.....++|.+..+..+.+.+.....++...+|++|.|||+-|+.+++..--.+.|.+. .=.+++......-+-..+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki-- 109 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI-- 109 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh--
Confidence 44566789999999999999988778899999999999999999999988655566554 334444433222000000
Q ss_pred HhhhhhccCCCHHHHHHHHHHHHH-----cCCc-EEEEEeCCCCc--cccccccCCCcccccccCCCCCCeEEE-EEeCC
Q 000280 231 DLELEFKQNENVFQRAEKLRQRLK-----NVKR-VLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVL-LTSRN 301 (1728)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~-----~~~~-~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~g~~il-vTtR~ 301 (1728)
.+. ..+..... .-++ -.+|||+++.. +.|..+...+.+ ....++.| ||+--
T Consensus 110 ---------k~f----akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-------~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 110 ---------KNF----AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED-------FSRTTRFILICNYL 169 (346)
T ss_pred ---------cCH----HHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-------cccceEEEEEcCCh
Confidence 000 01111110 0133 57899999887 567777655444 34455544 44433
Q ss_pred chhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000280 302 RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1728)
Q Consensus 302 ~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1728)
..+..........|+.++|..++...-++..+..+.- +-..++.+.|++.++|--
T Consensus 170 srii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v-~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 170 SRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGV-DIDDDALKLIAKISDGDL 224 (346)
T ss_pred hhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCcH
Confidence 3332212223457899999999999999888843222 222456778999998843
No 131
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00054 Score=86.36 Aligned_cols=181 Identities=12% Similarity=0.189 Sum_probs=109.4
Q ss_pred cCccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhcc--------------------CCCee
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK--------------------LFDKV 210 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~--------------------~f~~~ 210 (1728)
|.....++|-+..++.|..++..... +.+.++|+.|+||||+|+.+++..--.. +++ +
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v 90 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-V 90 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-e
Confidence 34456789999999999999986554 4688999999999999999999763211 111 1
Q ss_pred EEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCccccc
Q 000280 211 VFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKK 284 (1728)
Q Consensus 211 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~ 284 (1728)
+++.......+.+ +..+.+.+. .+++-++|+|+++... .++.+...+..
T Consensus 91 ~~idgas~~~vdd----------------------Ir~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe--- 145 (563)
T PRK06647 91 IEIDGASNTSVQD----------------------VRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE--- 145 (563)
T ss_pred EEecCcccCCHHH----------------------HHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc---
Confidence 1121111111111 112221111 2466789999998763 34444433332
Q ss_pred ccCCCCCCeEEEEEeCC-chhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000280 285 ERNDDRSRCTVLLTSRN-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1728)
Q Consensus 285 ~~~~~~~g~~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1728)
-...+.+|++|.. ..+..........+++.+++.++....+.+.+.... ..-.++.+..|++.++|.+-.+...
T Consensus 146 ----pp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-i~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 146 ----PPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-IKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred ----CCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2345566655543 333321222345789999999999888887763211 1223566788999999988544443
No 132
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=3.1e-05 Score=60.50 Aligned_cols=41 Identities=39% Similarity=0.622 Sum_probs=28.2
Q ss_pred cCCceeecCCCCCCccchHhhccccccEEeccCcccccccCc
Q 000280 605 KKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAP 646 (1728)
Q Consensus 605 ~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~ 646 (1728)
++|++|++++|.|+.+|.++++|++|++|++++| .++++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 3677777777777777777777888888888777 5665543
No 133
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00065 Score=86.70 Aligned_cols=200 Identities=13% Similarity=0.128 Sum_probs=110.9
Q ss_pred CccccccchHHHHHHHHHHHhcCC-ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHH
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSD 231 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~-~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 231 (1728)
.....++|.+..+..|..++.... .+.+.++|..|+||||+|+.+++..--.. .+.... .....-+..+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~~~----~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKPTP----EPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCCCC----CCCcccHHHHHHhcC
Confidence 345668899999999999998654 36788999999999999999999873211 110000 011111122222222
Q ss_pred hhhhh---cc-CCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEEEeCC
Q 000280 232 LELEF---KQ-NENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN 301 (1728)
Q Consensus 232 l~~~~---~~-~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~ 301 (1728)
..... .. .....+.++.+..... .+++-++|+|+++... .++.+...+.. -...+.+|++|.+
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe-------Pp~~tvfIL~t~~ 160 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE-------PPPRVVFVLATTD 160 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc-------CCcCeEEEEEeCC
Confidence 11100 00 0011122222222222 2456789999998763 34444333322 2234555554443
Q ss_pred -chhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 000280 302 -RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIAN 365 (1728)
Q Consensus 302 -~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~ 365 (1728)
..+..........+++..++.++....+.+.+...... -..+.+..|++.++|.+..+.....
T Consensus 161 ~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33332222335678888999999888888776432111 1235678899999998865544433
No 134
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00061 Score=87.45 Aligned_cols=198 Identities=13% Similarity=0.150 Sum_probs=111.7
Q ss_pred ccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHh
Q 000280 154 AYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDL 232 (1728)
Q Consensus 154 ~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 232 (1728)
....++|.+..++.|..++..... +.+.++|..|+||||+|+.+++.......... ......-.....|....
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~------~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK------GRPCGTCEMCRAIAEGS 87 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCccCHHHHHHhcCC
Confidence 456789999999999998886554 46789999999999999999987632110000 00111112222222221
Q ss_pred hhhh---cc-CCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEEEeCC-
Q 000280 233 ELEF---KQ-NENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN- 301 (1728)
Q Consensus 233 ~~~~---~~-~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~- 301 (1728)
+... +. .....+.+..+.+.+. ..++-++|+|+++... ..+.+...+.. ....+.+|++|.+
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe-------pp~~tv~Il~t~~~ 160 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE-------PPPHAIFILATTEV 160 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc-------CCCCeEEEEEeCCh
Confidence 1110 00 0001111222333222 2467799999997652 34444332322 2235566665543
Q ss_pred chhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 000280 302 RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIAN 365 (1728)
Q Consensus 302 ~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~ 365 (1728)
..+..........+.+..++.++....+.+.+..... .-.++.+..|++.++|.+..+...-.
T Consensus 161 ~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-NLEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred hhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3332212223457889999999999888887743211 12246688999999999865554433
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.69 E-value=0.00075 Score=80.69 Aligned_cols=149 Identities=15% Similarity=0.201 Sum_probs=86.7
Q ss_pred cCccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHH
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 230 (1728)
|.....++|.+...+.+.+++..+.. .++.++|++|+||||+|+.+++... ..+.+++.+. .....+...+ .
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~-----~~~~~i~~~~-~~~~~i~~~l-~ 89 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG-----AEVLFVNGSD-CRIDFVRNRL-T 89 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----ccceEeccCc-ccHHHHHHHH-H
Confidence 34566789999999999999886554 5666799999999999999988752 1234455444 2222111111 1
Q ss_pred HhhhhhccCCCHHHHHHHHHHHHH-cCCcEEEEEeCCCCcc--cc-ccccCCCcccccccCCCCCCeEEEEEeCCchhh-
Q 000280 231 DLELEFKQNENVFQRAEKLRQRLK-NVKRVLVILDNIWKLL--NL-DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL- 305 (1728)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~--~~-~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~- 305 (1728)
.+ ..... .+.+-++|+|+++... +. +.+...+.. ...++++|+||......
T Consensus 90 ~~-----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~-------~~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 90 RF-----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA-------YSKNCSFIITANNKNGII 145 (316)
T ss_pred HH-----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh-------cCCCceEEEEcCChhhch
Confidence 11 01110 1356689999997651 11 122111221 24567888888654211
Q ss_pred cccCCCccEEEccCCCHHHHHHHHHH
Q 000280 306 CNDMNSQKFFLIEVLSYEEAWCLFEK 331 (1728)
Q Consensus 306 ~~~~~~~~~~~l~~L~~~ea~~Lf~~ 331 (1728)
.........+.++..+.++..+++..
T Consensus 146 ~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 146 EPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 11112234677878888887766554
No 136
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.68 E-value=0.00025 Score=81.68 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=81.1
Q ss_pred ccccchHHHHHHHHHH---Hh------------cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCC
Q 000280 156 EQFDSRMKIFQNIMEV---LK------------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~---L~------------~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 220 (1728)
..++|.+...++|.+. .. .+....+.++|++|+||||+|+.+++.......-....++.++.
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~--- 82 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER--- 82 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH---
Confidence 3467877666555433 21 12345788999999999999999998764222111112333322
Q ss_pred HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc----------ccccccCCCcccccccCCCC
Q 000280 221 LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL----------NLDAVGIPFGDVKKERNDDR 290 (1728)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~~~~~ 290 (1728)
.++.. .. . .+. . ..+...+.+...-+|++|+++... ..+.+...+.+ ..
T Consensus 83 -~~l~~----~~---~--g~~-~---~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~-------~~ 141 (261)
T TIGR02881 83 -ADLVG----EY---I--GHT-A---QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED-------NR 141 (261)
T ss_pred -HHhhh----hh---c--cch-H---HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhc-------cC
Confidence 11111 10 0 011 1 122233332234589999997642 11222222221 22
Q ss_pred CCeEEEEEeCCchhhc------c-cCCCccEEEccCCCHHHHHHHHHHHhC
Q 000280 291 SRCTVLLTSRNRDVLC------N-DMNSQKFFLIEVLSYEEAWCLFEKIVG 334 (1728)
Q Consensus 291 ~g~~ilvTtR~~~v~~------~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 334 (1728)
....+|+++....... . .......+.+++++.+|-.+++++.+.
T Consensus 142 ~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 142 NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 3345555554332210 0 011235689999999999999988874
No 137
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.68 E-value=8e-06 Score=101.10 Aligned_cols=102 Identities=25% Similarity=0.391 Sum_probs=54.6
Q ss_pred CCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEecCccCCCccccccccCCceeec
Q 000280 533 CPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSF 612 (1728)
Q Consensus 533 ~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~~~~i~~L~~L~~L~L 612 (1728)
+.++..|.+..| .+.++... +..+.+|++|++++|.|.++.. +..+..|+.|++++|.|..+..+..+..|+.+++
T Consensus 94 ~~~l~~l~l~~n--~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 94 LKSLEALDLYDN--KIEKIENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred ccceeeeecccc--chhhcccc-hhhhhcchheeccccccccccc-hhhccchhhheeccCcchhccCCccchhhhcccC
Confidence 445555555544 33333321 2445566666666666555543 4455556666666666555555555666666666
Q ss_pred CCCCCCccchH-hhccccccEEeccCc
Q 000280 613 RNSDIQQLPRE-IGQLVQLRLLDLRNC 638 (1728)
Q Consensus 613 s~~~i~~LP~~-i~~L~~L~~L~L~~~ 638 (1728)
++|.+..++.. ...+.+|+.+++.+|
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCC
Confidence 66655555443 355555555555555
No 138
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.67 E-value=0.00026 Score=94.77 Aligned_cols=164 Identities=15% Similarity=0.228 Sum_probs=95.0
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCC----CeeEEEEECCCCCHHHHHHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF----DKVVFVEVTQTPDLQTIQNKLSSD 231 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~ 231 (1728)
..++||+++++.+++.|.....+-+.++|.+|+|||++|+.++.+.....-. +..+|. + +...++ .
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c-
Confidence 4679999999999999986666677899999999999999999987532111 234442 1 222111 1
Q ss_pred hhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcccccc-ccC-CCcccccccCCCCCCeEEEEEeCCchhhc---
Q 000280 232 LELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDA-VGI-PFGDVKKERNDDRSRCTVLLTSRNRDVLC--- 306 (1728)
Q Consensus 232 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~-l~~-~~~~~~~~~~~~~~g~~ilvTtR~~~v~~--- 306 (1728)
+... ....+++...+.+.+.+.++.+|++|+++....-.. -+. ...++.+..+ ....-++|.+|...+...
T Consensus 249 -g~~~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l-~rg~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 249 -GTKY--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL-ARGELQCIGATTLDEYRKHIE 324 (821)
T ss_pred -cCCC--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH-hCCCcEEEEeCCHHHHHHHHh
Confidence 1111 122344556666666656789999999975421000 000 0000010011 122345555555443211
Q ss_pred ---ccCCCccEEEccCCCHHHHHHHHHHHh
Q 000280 307 ---NDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1728)
Q Consensus 307 ---~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 333 (1728)
........+.++..+.++...+++...
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 012234578899999999888876543
No 139
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=5.1e-05 Score=59.32 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=22.1
Q ss_pred cceEEEecCcCccccCccccCCCcccEEEecCccCCCc
Q 000280 561 ELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDV 598 (1728)
Q Consensus 561 ~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~~ 598 (1728)
+|++|++++|.|+.+|..|++|++|++|++++|.++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 46666666666666665566666666666666655543
No 140
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.00082 Score=85.28 Aligned_cols=195 Identities=15% Similarity=0.141 Sum_probs=107.8
Q ss_pred cCccccccchHHHHHHHHHHHhcCC-ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHH
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 230 (1728)
|.....++|.+..++.+.+++.... .+.+.++|+.|+||||+|+.+++...-....++ .+.+.-.....|..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~~ 84 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAITN 84 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHhc
Confidence 3446678999999999999998654 456778999999999999999987632111000 00000011111111
Q ss_pred Hhhhhh---cc-CCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEE-Ee
Q 000280 231 DLELEF---KQ-NENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLL-TS 299 (1728)
Q Consensus 231 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilv-Tt 299 (1728)
....+. +. .....+.+..++.... .+++-++|+|+++... .++.+...+.. -...+.+|+ ||
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-------pp~~~ifIlatt 157 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-------PPAHVIFILATT 157 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC-------CCCCeEEEEEeC
Confidence 110000 00 0011112223333322 2467788999998662 34444332222 123344444 44
Q ss_pred CCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000280 300 RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 361 (1728)
Q Consensus 300 R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 361 (1728)
....+..........+.+.+++.++....+...+..... .-.++.+..|++.++|-+..+.
T Consensus 158 ~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi-~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 158 EPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI-EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred ChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 444433322233567889999999998888887732111 1124667788999999775433
No 141
>CHL00181 cbbX CbbX; Provisional
Probab=97.62 E-value=0.0011 Score=76.62 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=72.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCC
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (1728)
..+.++|.+|+||||+|+.+++.......-...-|+.++. .++. ..+.. ... . ...+.+.+..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~----~~~~g-----~~~-~---~~~~~l~~a~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLV----GQYIG-----HTA-P---KTKEVLKKAM 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHH----HHHhc-----cch-H---HHHHHHHHcc
Confidence 3588999999999999999999764322211112444442 1222 11111 111 1 1222232223
Q ss_pred cEEEEEeCCCCcc-----------ccccccCCCcccccccCCCCCCeEEEEEeCCchhhcc-------cCCCccEEEccC
Q 000280 258 RVLVILDNIWKLL-----------NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN-------DMNSQKFFLIEV 319 (1728)
Q Consensus 258 ~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~-------~~~~~~~~~l~~ 319 (1728)
.-+|+||+++... ..+.+...+.+ ...+.+||+++........ .......+.+++
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~-------~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~ 195 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN-------QRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPD 195 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhc-------CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCC
Confidence 4599999997531 11112122222 3345677777754332110 112245899999
Q ss_pred CCHHHHHHHHHHHhC
Q 000280 320 LSYEEAWCLFEKIVG 334 (1728)
Q Consensus 320 L~~~ea~~Lf~~~~~ 334 (1728)
++.+|..+++...+.
T Consensus 196 ~t~~el~~I~~~~l~ 210 (287)
T CHL00181 196 YTPEELLQIAKIMLE 210 (287)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988873
No 142
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.62 E-value=0.00093 Score=82.24 Aligned_cols=163 Identities=17% Similarity=0.208 Sum_probs=92.7
Q ss_pred ccccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCcchHHHHHHHHHHHHHhcc---CCCeeEEEEECC
Q 000280 154 AYEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK---LFDKVVFVEVTQ 217 (1728)
Q Consensus 154 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~ 217 (1728)
....+.|.+..++++.+.+.- ...+-|.++|++|+|||++|+++++...... ......|+++..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 345677899999999888641 2346799999999999999999999874221 112344555443
Q ss_pred CCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHH----HcCCcEEEEEeCCCCccc---------c-----ccccCCC
Q 000280 218 TPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRL----KNVKRVLVILDNIWKLLN---------L-----DAVGIPF 279 (1728)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlVlDdv~~~~~---------~-----~~l~~~~ 279 (1728)
.. + +.... ......+..+++.. ..+++++|+||+++.... . ..+...+
T Consensus 260 ~e----L----l~kyv------Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 PE----L----LNKYV------GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred hh----h----ccccc------chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 21 1 11100 00111222232222 235789999999986411 0 1111111
Q ss_pred cccccccCCCCCCeEEEEEeCCchhhccc-C---CCccEEEccCCCHHHHHHHHHHHhCC
Q 000280 280 GDVKKERNDDRSRCTVLLTSRNRDVLCND-M---NSQKFFLIEVLSYEEAWCLFEKIVGD 335 (1728)
Q Consensus 280 ~~~~~~~~~~~~g~~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~ 335 (1728)
.. . ....+..||.||-........ . .-+..+.++..+.++..++|+.+...
T Consensus 326 Dg----l-~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DG----V-ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cc----c-ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 11 0 012344455566444322211 1 22557999999999999999998754
No 143
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.62 E-value=0.0017 Score=78.50 Aligned_cols=176 Identities=14% Similarity=0.177 Sum_probs=100.8
Q ss_pred ccccccchHHHHHHHHHHHh----c---------CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCC
Q 000280 154 AYEQFDSRMKIFQNIMEVLK----D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1728)
Q Consensus 154 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 220 (1728)
....+.|.+..+++|.+.+. . ...+-|.++|++|+|||++|+++++... ..| +.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~f-----i~i~~--- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATF-----IRVVG--- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh---
Confidence 34567898888888877764 1 2357899999999999999999998763 122 22211
Q ss_pred HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc------------c----ccccCCCccccc
Q 000280 221 LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN------------L----DAVGIPFGDVKK 284 (1728)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~------------~----~~l~~~~~~~~~ 284 (1728)
..+ ..... .+ .......+.+......+.+|+||+++.... . ..+...+..
T Consensus 213 -s~l----~~k~~-----ge-~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~--- 278 (398)
T PTZ00454 213 -SEF----VQKYL-----GE-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG--- 278 (398)
T ss_pred -HHH----HHHhc-----ch-hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc---
Confidence 111 11110 01 122334444444446889999999875310 0 011000100
Q ss_pred ccCCCCCCeEEEEEeCCchhhcc-cC---CCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000280 285 ERNDDRSRCTVLLTSRNRDVLCN-DM---NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1728)
Q Consensus 285 ~~~~~~~g~~ilvTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1728)
.....+..||+||........ .. .-...+.++..+.++..++|+.+.......++. -..++++...|.-
T Consensus 279 --~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 279 --FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred --cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 012346678888875543321 11 235678999999999888888776432222211 1346677776665
No 144
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.59 E-value=0.00052 Score=84.75 Aligned_cols=161 Identities=19% Similarity=0.237 Sum_probs=96.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1728)
...+.|+|..|+|||+||+++++.......-..++|++. .++...+...+... . ...+.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~-- 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----K----MEEFKEKYR-- 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----C----HHHHHHHHH--
Confidence 357899999999999999999998864321234667643 33444444444311 1 223344444
Q ss_pred CcEEEEEeCCCCcccc----ccccCCCcccccccCCCCCCeEEEEEeCCch-hhc-------ccCCCccEEEccCCCHHH
Q 000280 257 KRVLVILDNIWKLLNL----DAVGIPFGDVKKERNDDRSRCTVLLTSRNRD-VLC-------NDMNSQKFFLIEVLSYEE 324 (1728)
Q Consensus 257 ~~~LlVlDdv~~~~~~----~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~-v~~-------~~~~~~~~~~l~~L~~~e 324 (1728)
..-+|||||++....- +.+...+.. + ...|..+|+||.... ... ..+.....+.+++.+.++
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~----~--~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~ 272 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNA----L--HENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLET 272 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHH----H--HHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHH
Confidence 2348899999864221 112111111 1 123456788776421 111 023334578999999999
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000280 325 AWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 361 (1728)
Q Consensus 325 a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 361 (1728)
-..++++.+.... ..-.++++..|++.+.|..-.+.
T Consensus 273 r~~il~~~~~~~~-~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 273 RLAILQKKAEEEG-LELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHH
Confidence 9999999885322 12236778889999988776433
No 145
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.58 E-value=0.00051 Score=77.74 Aligned_cols=168 Identities=18% Similarity=0.232 Sum_probs=107.3
Q ss_pred ccccchHHHHHHHHHHHhcCC---ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHh
Q 000280 156 EQFDSRMKIFQNIMEVLKDTN---VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDL 232 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~~~---~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 232 (1728)
..|.+|+..+..+...+.+.. +..|.|+|-+|.|||.+.+++.+... -..+|+++-+.++.+.+...|+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHh
Confidence 467899999999999987432 34568999999999999999998873 2358999999999999999999998
Q ss_pred hhhhccCC-------CHHHHHHHHHHH--HH-cCCcEEEEEeCCCCccccccccCCCcccccc--cCCCCCCeEEEEEeC
Q 000280 233 ELEFKQNE-------NVFQRAEKLRQR--LK-NVKRVLVILDNIWKLLNLDAVGIPFGDVKKE--RNDDRSRCTVLLTSR 300 (1728)
Q Consensus 233 ~~~~~~~~-------~~~~~~~~l~~~--l~-~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~--~~~~~~g~~ilvTtR 300 (1728)
+....+.. ...+.+..+.++ .. .++.++||||+++...|.+.+.. +.+.+. +. ..+...|+...-
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll--~~l~~L~el~-~~~~i~iils~~ 157 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILL--QCLFRLYELL-NEPTIVIILSAP 157 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHH--HHHHHHHHHh-CCCceEEEEecc
Confidence 62221111 111222233331 11 24689999999998877665422 111111 11 223333333222
Q ss_pred Cc-hhhcccCCC--ccEEEccCCCHHHHHHHHHH
Q 000280 301 NR-DVLCNDMNS--QKFFLIEVLSYEEAWCLFEK 331 (1728)
Q Consensus 301 ~~-~v~~~~~~~--~~~~~l~~L~~~ea~~Lf~~ 331 (1728)
.- ..-...++. ..++..+.-+.+|...++.+
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 21 111112344 34677888999999888866
No 146
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.58 E-value=4.9e-06 Score=106.80 Aligned_cols=227 Identities=17% Similarity=0.154 Sum_probs=130.4
Q ss_pred CCCCCCCccEEEEec-CCCccccc--chhHHHhcCCCCceEecccccceeeeccccccCcccCCCcCCCCCCCCCccccC
Q 000280 1371 TLDSFCNLYYLRIEN-CNKLSNIF--PWSMLERLQNLDDLRVVCCDSVQEIFELRALNGWDTHNRTTTQLPETIPSFVFP 1447 (1728)
Q Consensus 1371 ~~~~~~~L~~L~i~~-C~~l~~l~--~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1447 (1728)
....++.|+.|++.+ |....... .......+.+|+.|++++|..+.+..- . .-...++
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-~------------------~l~~~c~ 269 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-S------------------ALASRCP 269 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-H------------------HHHhhCC
Confidence 455678899999987 34333322 234567788899999999865443311 0 0012278
Q ss_pred ccceeeccCCCCcccccCCcccCCCcccceEEEeccccchhhcccccccccCCCCCcCCcccccccccccccccccccee
Q 000280 1448 QLTFLILRGLPRLKSFYPGVHISEWPVLKKLVVWECAEVELLASEFFGLQETPANSQHDINVPQPLFSIYKIGFRCLEDL 1527 (1728)
Q Consensus 1448 ~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L 1527 (1728)
+|+.|.+.+|+.+++.........|++|++|+++.|..+.+..- ..+ ...+++|+.|
T Consensus 270 ~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l----------------------~~~-~~~c~~l~~l 326 (482)
T KOG1947|consen 270 NLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGL----------------------EAL-LKNCPNLREL 326 (482)
T ss_pred CcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHH----------------------HHH-HHhCcchhhh
Confidence 99999988898887776555567789999999999988744311 111 1113334443
Q ss_pred eccc---ccccccccCCCCCccccc-CCccEEEEecCCCcccccchhhhhhccccc-EEEEccccch-hhhccccccccc
Q 000280 1528 ELST---LPKLLHLWKGKSKLSHVF-QNLTTLDVSICDGLINLVTLAAAESLVKLA-RMKIAACGKM-EKVIQQVGAEVV 1601 (1728)
Q Consensus 1528 ~l~~---c~~l~~~~~~~~~~~~~~-~~L~~L~i~~C~~l~~l~~~~~~~~L~~L~-~L~i~~C~~l-~~i~~~~~~~~~ 1601 (1728)
.+.. |+.++.....+.. ... ..+..+.+.+|++++++..... . ..... .+.+.+|+.+ +.+....
T Consensus 327 ~~~~~~~c~~l~~~~l~~~~--~~~~d~~~~~~~~~~~~l~~~~l~~~-~-~~~~~~~~~l~gc~~l~~~l~~~~----- 397 (482)
T KOG1947|consen 327 KLLSLNGCPSLTDLSLSGLL--TLTSDDLAELILRSCPKLTDLSLSYC-G-ISDLGLELSLRGCPNLTESLELRL----- 397 (482)
T ss_pred hhhhcCCCccHHHHHHHHhh--ccCchhHhHHHHhcCCCcchhhhhhh-h-ccCcchHHHhcCCcccchHHHHHh-----
Confidence 3333 3344444322211 111 2566666666666666533222 2 22222 4556777766 3222221
Q ss_pred cccccccccccceeccccCCCccccccCCCcceeeCCCccEEEEeccCCCcccC
Q 000280 1602 EEDSIATFNQLQYLGIDCLPSLTCFCFGRSKNKLEFPSLEQVVVRECPNMEMFS 1655 (1728)
Q Consensus 1602 ~~~~~~~~~~L~~L~L~~lp~L~~~~~~~~~~~~~~psL~~l~i~~C~~l~~~~ 1655 (1728)
..+++|+.|.+..|...+..... .....+..++.+.+.+|+.+..-.
T Consensus 398 -----~~~~~l~~L~l~~~~~~t~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 398 -----CRSDSLRVLNLSDCRLVTDKGLR--CLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred -----ccCCccceEecccCccccccchH--HHhhhhhccccCCccCcccccchh
Confidence 12344888888888777765554 111116677888888888776643
No 147
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0018 Score=72.98 Aligned_cols=186 Identities=19% Similarity=0.201 Sum_probs=113.6
Q ss_pred CccccccchHHHHHHHHHHHh----c---------CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC
Q 000280 153 TAYEQFDSRMKIFQNIMEVLK----D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP 219 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~----~---------~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 219 (1728)
..+..+-|-++.+++|.+.+. + ..++-|.+||++|.|||-||++|+++.... |+.+...
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS- 219 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS- 219 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH-
Confidence 345667789999999999876 1 246789999999999999999999987432 4444331
Q ss_pred CHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccCCCcccc
Q 000280 220 DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN----------------LDAVGIPFGDVK 283 (1728)
Q Consensus 220 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~~~~~~ 283 (1728)
++.+..-. .....+..+++.-++..+.+|.+|.++.... .-++...+..+.
T Consensus 220 -------ElVqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 220 -------ELVQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred -------HHHHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 22222211 1124556666666667899999999876410 001111111100
Q ss_pred cccCCCCCCeEEEEEeCCchhhcc---cCC-CccEEEccCCCHHHHHHHHHHHhCCC--CCCCchHHHHHHHHHHhCCCh
Q 000280 284 KERNDDRSRCTVLLTSRNRDVLCN---DMN-SQKFFLIEVLSYEEAWCLFEKIVGDS--AKASDFRVIADEIVRRCGGLP 357 (1728)
Q Consensus 284 ~~~~~~~~g~~ilvTtR~~~v~~~---~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~glP 357 (1728)
.....|||..|-..++..- ..| -++.++++.-+.+.-.+.|+-++... .+.-++ +.|++.+.|.-
T Consensus 287 -----~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~s 357 (406)
T COG1222 287 -----PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFS 357 (406)
T ss_pred -----CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCc
Confidence 2356789988866554432 122 25678888666666667777777532 222333 45777777765
Q ss_pred ----HHHHHHHHHHh
Q 000280 358 ----VAIKTIANALK 368 (1728)
Q Consensus 358 ----Lai~~~a~~L~ 368 (1728)
-||.+=|++++
T Consensus 358 GAdlkaictEAGm~A 372 (406)
T COG1222 358 GADLKAICTEAGMFA 372 (406)
T ss_pred hHHHHHHHHHHhHHH
Confidence 45556666654
No 148
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.56 E-value=0.00099 Score=82.19 Aligned_cols=161 Identities=15% Similarity=0.221 Sum_probs=96.9
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCC-eeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHc
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD-KVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1728)
...+.|+|..|+|||+||+++++..... +++ .++|++. .++..++...+... .. ..+++.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~----~~f~~~~~- 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEG-----KL----NEFREKYR- 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhcc-----cH----HHHHHHHH-
Confidence 4569999999999999999999987533 233 5677753 34555555554311 11 22333333
Q ss_pred CCcEEEEEeCCCCccc---c-ccccCCCcccccccCCCCCCeEEEEEeC-Cchhhcc-------cCCCccEEEccCCCHH
Q 000280 256 VKRVLVILDNIWKLLN---L-DAVGIPFGDVKKERNDDRSRCTVLLTSR-NRDVLCN-------DMNSQKFFLIEVLSYE 323 (1728)
Q Consensus 256 ~~~~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~g~~ilvTtR-~~~v~~~-------~~~~~~~~~l~~L~~~ 323 (1728)
...-+||+||++.... + +.+...+.. + ...|..||+||. .+.-... .......+.+++.+.+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~----l--~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e 266 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNE----L--HDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHH----H--HHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHH
Confidence 2455899999985421 1 122111111 1 123446888875 3221110 2334558899999999
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000280 324 EAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 361 (1728)
Q Consensus 324 ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 361 (1728)
+-..++++.+.... ..--++++..|++.+.|.--.+.
T Consensus 267 ~r~~IL~~~~~~~~-~~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 267 TRKKIARKMLEIEH-GELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHHHHHhcC-CCCCHHHHHHHHhccccCHHHHH
Confidence 99999999885321 12235778889999888654443
No 149
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.002 Score=82.28 Aligned_cols=183 Identities=13% Similarity=0.196 Sum_probs=108.2
Q ss_pred CccccccchHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhccCCC-------------------eeEE
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD-------------------KVVF 212 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~-------------------~~~w 212 (1728)
.....++|.+..+..|..++..+.+ +.+.++|+.|+||||+|+.+++...-....+ .++.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~e 92 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFE 92 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeee
Confidence 4456789999999999999986655 4568999999999999999998763211110 0111
Q ss_pred EEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCccccccc
Q 000280 213 VEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKER 286 (1728)
Q Consensus 213 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~ 286 (1728)
++......+. .++.++..+. .+++-++|+|+++... ..+.+...+.+
T Consensus 93 id~~s~~~v~----------------------~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe----- 145 (576)
T PRK14965 93 IDGASNTGVD----------------------DIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE----- 145 (576)
T ss_pred eeccCccCHH----------------------HHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc-----
Confidence 1111111111 1222232222 2456689999998763 23333322222
Q ss_pred CCCCCCeEEEE-EeCCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh-HHHHHHH
Q 000280 287 NDDRSRCTVLL-TSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP-VAIKTIA 364 (1728)
Q Consensus 287 ~~~~~g~~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~a 364 (1728)
-...+.+|+ ||....+..........+++.+++.++....+...+..... .-.++.+..|++.++|.. .|+..+-
T Consensus 146 --pp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-~i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 146 --PPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI-SISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred --CCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 223455554 55444444322333567889999999998888876632211 122456778999999966 4444443
Q ss_pred H
Q 000280 365 N 365 (1728)
Q Consensus 365 ~ 365 (1728)
.
T Consensus 223 q 223 (576)
T PRK14965 223 Q 223 (576)
T ss_pred H
Confidence 3
No 150
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.54 E-value=0.00098 Score=77.26 Aligned_cols=132 Identities=16% Similarity=0.158 Sum_probs=72.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCc
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKR 258 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 258 (1728)
.+.++|.+|+|||++|+.+++...........-|+.++. .++ ...+.. ... . .+.+.+.+-..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g-----~~~-~---~~~~~~~~a~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIG-----HTA-P---KTKEILKRAMG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcc-----cch-H---HHHHHHHHccC
Confidence 688999999999999999988775332222112444432 122 211111 111 1 12233332344
Q ss_pred EEEEEeCCCCcc------c-----cccccCCCcccccccCCCCCCeEEEEEeCCchhhcc-------cCCCccEEEccCC
Q 000280 259 VLVILDNIWKLL------N-----LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN-------DMNSQKFFLIEVL 320 (1728)
Q Consensus 259 ~LlVlDdv~~~~------~-----~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~-------~~~~~~~~~l~~L 320 (1728)
-+|+||++.... + ++.+...+.. ...+.+||+++........ .......+.++++
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~-------~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l 195 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN-------QRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDY 195 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhc-------CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCc
Confidence 689999997431 1 1222222222 3345667777654322110 0112467999999
Q ss_pred CHHHHHHHHHHHhC
Q 000280 321 SYEEAWCLFEKIVG 334 (1728)
Q Consensus 321 ~~~ea~~Lf~~~~~ 334 (1728)
+.+|-..++...+.
T Consensus 196 ~~edl~~I~~~~l~ 209 (284)
T TIGR02880 196 SEAELLVIAGLMLK 209 (284)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988774
No 151
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.52 E-value=0.00068 Score=82.28 Aligned_cols=181 Identities=16% Similarity=0.169 Sum_probs=100.1
Q ss_pred CccccccchHHHHHHHHHHHh----c---------CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC
Q 000280 153 TAYEQFDSRMKIFQNIMEVLK----D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP 219 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~----~---------~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 219 (1728)
..+.++.|.+..++++.+++. . ...+.|.++|++|+|||++|+.+++... ..| +.+...
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~f-----i~V~~s- 251 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATF-----LRVVGS- 251 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCE-----EEEecc-
Confidence 344567899999988888774 1 2345788999999999999999999763 223 222211
Q ss_pred CHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccccc-------------cccCCCccccccc
Q 000280 220 DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLD-------------AVGIPFGDVKKER 286 (1728)
Q Consensus 220 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~-------------~l~~~~~~~~~~~ 286 (1728)
+ +. .... . .....+..+.+......+.+|+||+++....=. .+...+..+ +..
T Consensus 252 e---L~----~k~~-----G-e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L-dg~ 317 (438)
T PTZ00361 252 E---LI----QKYL-----G-DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL-DGF 317 (438)
T ss_pred h---hh----hhhc-----c-hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH-hhh
Confidence 1 11 1110 0 111223344444444578899999986431100 000000000 000
Q ss_pred CCCCCCeEEEEEeCCchhhccc-C---CCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChH
Q 000280 287 NDDRSRCTVLLTSRNRDVLCND-M---NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV 358 (1728)
Q Consensus 287 ~~~~~g~~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 358 (1728)
....+.+||+||......... . .....+.++..+.++..++|..++.......+. -..+++..+.|+--
T Consensus 318 -~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~sg 390 (438)
T PTZ00361 318 -DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELSG 390 (438)
T ss_pred -cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCCH
Confidence 023456788888755433321 1 235688999999999999999887532221111 12345666655543
No 152
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.47 E-value=2.6e-05 Score=96.61 Aligned_cols=107 Identities=23% Similarity=0.333 Sum_probs=81.6
Q ss_pred cCCCcceEEEecCcCccccCccccCCCcccEEEecCccCCCccccccccCCceeecCCCCCCccchHhhccccccEEecc
Q 000280 557 EGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLR 636 (1728)
Q Consensus 557 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~ 636 (1728)
..+++|.+|++.+|.|..+...+..+.+|++|++++|.|+.+..+..+..|+.|++++|.|..++. +..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-CccchhhhcccCC
Confidence 567888888888888887776677788888888888888888888888888888888887776643 4557888888888
Q ss_pred CcccccccCc-cccccCcccceeccCCCccc
Q 000280 637 NCRRLQAIAP-NVISKLSRLEELYMGDSFSQ 666 (1728)
Q Consensus 637 ~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~ 666 (1728)
+| .+..++. . +..+.+|+.+++.+|.+.
T Consensus 171 ~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 171 YN-RIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cc-hhhhhhhhh-hhhccchHHHhccCCchh
Confidence 88 5666655 2 367777888887776653
No 153
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.47 E-value=6.3e-06 Score=98.85 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=88.4
Q ss_pred ccEEEecCccCCCc-cccccccCCceeecCCCCCCccchHhhccccccEEeccCcccccccCccccccCcccceeccCCC
Q 000280 585 LRTLSLEGCQVGDV-AIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDS 663 (1728)
Q Consensus 585 Lr~L~L~~~~i~~~-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 663 (1728)
|.+-+.++|.+... .++.-+.+|++|||++|.+.+.- .+..|.+|.||||++| .++.+|.-..... +|+.|.+++|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeeccc
Confidence 55666666766655 67778899999999999988775 7899999999999999 7888886322233 3899999887
Q ss_pred ccccccccCCCccchhhhcCCCCCCeEEEEecccccCchhh---hccccceeEEEE
Q 000280 664 FSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQDL---ISMKLEIFRMFI 716 (1728)
Q Consensus 664 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~---~~~~L~~l~~~~ 716 (1728)
.+. .+..+.+|.+|+.|+++.|-+....... .+..|..|.+..
T Consensus 243 ~l~----------tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 243 ALT----------TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred HHH----------hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 763 4667778889999999988766554432 455556555543
No 154
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.46 E-value=0.00047 Score=82.23 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=72.8
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhh
Q 000280 156 EQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELE 235 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 235 (1728)
...++.+..++.+...|... +.|.++|++|+|||++|+++++.......|+.+.||.+++..+..++...+.-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 34677888999999998753 578889999999999999999988656678889999999988877665422110 000
Q ss_pred hccCCCHHHHHHHHHHHHH--cCCcEEEEEeCCCCc
Q 000280 236 FKQNENVFQRAEKLRQRLK--NVKRVLVILDNIWKL 269 (1728)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~--~~~~~LlVlDdv~~~ 269 (1728)
..... ....++.+... .++++++|+|++...
T Consensus 252 y~~~~---G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 FRRKD---GIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred eEecC---chHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00001 11111122222 147899999998655
No 155
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.46 E-value=0.0011 Score=82.60 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=97.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1728)
...+.|+|..|+|||.|++++++.......-..++|++ ..++..++...+... ....+++++.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~---------~~~~f~~~y~-- 376 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG---------KGDSFRRRYR-- 376 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc---------cHHHHHHHhh--
Confidence 34689999999999999999999875322223466764 334444444333211 1123344443
Q ss_pred CcEEEEEeCCCCcc---ccc-cccCCCcccccccCCCCCCeEEEEEeCCch---------hhcccCCCccEEEccCCCHH
Q 000280 257 KRVLVILDNIWKLL---NLD-AVGIPFGDVKKERNDDRSRCTVLLTSRNRD---------VLCNDMNSQKFFLIEVLSYE 323 (1728)
Q Consensus 257 ~~~LlVlDdv~~~~---~~~-~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~---------v~~~~~~~~~~~~l~~L~~~ 323 (1728)
+-=+|||||+.... .|+ .+...+ +.+ ...|..|||||+... +.+ .+...-++.++..+.+
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~----N~l--~e~gk~IIITSd~~P~eL~~l~~rL~S-Rf~~GLvv~I~~PD~E 449 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTF----NTL--HNANKQIVLSSDRPPKQLVTLEDRLRN-RFEWGLITDVQPPELE 449 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHH----HHH--HhcCCCEEEecCCChHhhhhccHHHHh-hhhcCceEEcCCCCHH
Confidence 34578899997652 222 121111 112 223456888887631 111 3455678999999999
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000280 324 EAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 361 (1728)
Q Consensus 324 ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 361 (1728)
.-.+++++++.... ..--+++++-|++++.+..-.+.
T Consensus 450 tR~aIL~kka~~r~-l~l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 450 TRIAILRKKAVQEQ-LNAPPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHHHHHHHhcC-CCCCHHHHHHHHHhccCCHHHHH
Confidence 99999999885321 12236778888888877654433
No 156
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.45 E-value=0.0016 Score=81.49 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=97.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1728)
...+.|+|..|+|||+||+++++.......-..++|++.. ++...+...+... . ...+++.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~----~~~~~~~~~-- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----T----MEEFKEKYR-- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----c----HHHHHHHHh--
Confidence 3578999999999999999999998643222346676533 3333344443211 1 123444554
Q ss_pred CcEEEEEeCCCCccc---c-ccccCCCcccccccCCCCCCeEEEEEeCCch--h-------hcccCCCccEEEccCCCHH
Q 000280 257 KRVLVILDNIWKLLN---L-DAVGIPFGDVKKERNDDRSRCTVLLTSRNRD--V-------LCNDMNSQKFFLIEVLSYE 323 (1728)
Q Consensus 257 ~~~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~--v-------~~~~~~~~~~~~l~~L~~~ 323 (1728)
+.-+|||||++.... + +.+...+.. + ...|..||+||.... + .+ .......+.+++.+.+
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~----l--~~~~~~iiits~~~p~~l~~l~~~l~S-Rl~~gl~v~i~~pd~~ 283 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNA----L--HEAGKQIVLTSDRPPKELPGLEERLRS-RFEWGLTVDIEPPDLE 283 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHH----H--HHCCCcEEEECCCCHHHHHHHHHHHHh-HhcCCeeEEecCCCHH
Confidence 344899999975421 1 222111111 1 123445788776542 1 11 3444568999999999
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000280 324 EAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 361 (1728)
Q Consensus 324 ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 361 (1728)
+-..++++.+... ...-.++++..|++.++|..-.+.
T Consensus 284 ~r~~il~~~~~~~-~~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 284 TRIAILKKKAEEE-GIDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHcCcCCCHHHHH
Confidence 9999999988532 112235778899999998876433
No 157
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.42 E-value=0.0074 Score=71.09 Aligned_cols=196 Identities=17% Similarity=0.182 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHH-HHHHHHHHhccCCCeeEEEEECCC---CCHHHHHHHHHHHhhhhh
Q 000280 161 RMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLV-KQIAMQVIEDKLFDKVVFVEVTQT---PDLQTIQNKLSSDLELEF 236 (1728)
Q Consensus 161 R~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa-~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~ 236 (1728)
|.+.+++|..||.+..-..|.|.|+-|+||+.|+ .++.++. +.++.|++.+- .+-..+...++.++|-..
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 6678899999999888889999999999999999 7777654 23777776532 234455555555554210
Q ss_pred ------------------------ccCCCHHHHHHHHHHH----HHc-------------------------CCcEEEEE
Q 000280 237 ------------------------KQNENVFQRAEKLRQR----LKN-------------------------VKRVLVIL 263 (1728)
Q Consensus 237 ------------------------~~~~~~~~~~~~l~~~----l~~-------------------------~~~~LlVl 263 (1728)
.=.++.+.....+.+. |++ .++-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 0012333322222111 110 13779999
Q ss_pred eCCCCcc-----------ccccccCCCcccccccCCCCCCeEEEEEeCCchhhcc---cC--CCccEEEccCCCHHHHHH
Q 000280 264 DNIWKLL-----------NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN---DM--NSQKFFLIEVLSYEEAWC 327 (1728)
Q Consensus 264 Ddv~~~~-----------~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~---~~--~~~~~~~l~~L~~~ea~~ 327 (1728)
||..... +|..-.. .++-.+||++|-+...... .+ ...+.+.|...+.+.|..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv-----------~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV-----------QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH-----------hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 9975542 3333211 3456689999987655442 22 235788999999999999
Q ss_pred HHHHHhCCCCCC-------------------CchHHHHHHHHHHhCCChHHHHHHHHHHhcCCch
Q 000280 328 LFEKIVGDSAKA-------------------SDFRVIADEIVRRCGGLPVAIKTIANALKNKRLY 373 (1728)
Q Consensus 328 Lf~~~~~~~~~~-------------------~~~~~~~~~i~~~c~glPLai~~~a~~L~~~~~~ 373 (1728)
+...+.+..... .....-....+..+||=-.-+..+++.++....+
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 999888532110 1233445678889999999999999999876543
No 158
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.40 E-value=2.9e-05 Score=86.33 Aligned_cols=85 Identities=21% Similarity=0.264 Sum_probs=47.7
Q ss_pred cCCCcceEEEecCcCcc-----ccCccccCCCcccEEEecCccCCC-----cc-------ccccccCCceeecCCCCCC-
Q 000280 557 EGMNELRVVHFTRTCFL-----SLPSSLVCLISLRTLSLEGCQVGD-----VA-------IVGQLKKLEILSFRNSDIQ- 618 (1728)
Q Consensus 557 ~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~-----~~-------~i~~L~~L~~L~Ls~~~i~- 618 (1728)
..+..+..++||+|.+. .+-..+.+.+.||.-++++-.-.. |+ .+-...+|++||||+|.+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 45667777777777653 134445566677777776543211 11 2223347777777777543
Q ss_pred ccc----hHhhccccccEEeccCccccc
Q 000280 619 QLP----REIGQLVQLRLLDLRNCRRLQ 642 (1728)
Q Consensus 619 ~LP----~~i~~L~~L~~L~L~~~~~l~ 642 (1728)
.-| .-|...+.|++|.|.+| .+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~-Glg 133 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNC-GLG 133 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcC-CCC
Confidence 222 22455667777777766 444
No 159
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0031 Score=74.29 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=90.2
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhcc--------------------CCCeeEEEEEC---CCCCHHHHHHHHHHHh
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDK--------------------LFDKVVFVEVT---QTPDLQTIQNKLSSDL 232 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~---~~~~~~~~~~~i~~~l 232 (1728)
-.+.+.++|+.|+||||+|+.+++..--.. |.| +.|+.-. +...+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~i----------- 88 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKV----------- 88 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCH-----------
Confidence 356788999999999999999999874221 111 2222111 11111
Q ss_pred hhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEEEeCCc-hhh
Q 000280 233 ELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVL 305 (1728)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~-~v~ 305 (1728)
+.++.+.+.+. .+++-++|+|+++... ..+.+...+.+ -..++.+|+||.+. .+.
T Consensus 89 -----------d~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-------Pp~~~~fiL~t~~~~~ll 150 (328)
T PRK05707 89 -----------DQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE-------PSGDTVLLLISHQPSRLL 150 (328)
T ss_pred -----------HHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhC-------CCCCeEEEEEECChhhCc
Confidence 22222333332 2455566789998762 33333333322 23456677777665 333
Q ss_pred cccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000280 306 CNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1728)
Q Consensus 306 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1728)
.........+.+.+++.+++.+.+....+. ..++.+..++..++|.|.....+
T Consensus 151 ~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 151 PTIKSRCQQQACPLPSNEESLQWLQQALPE-----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHhhceeeeCCCcCHHHHHHHHHHhccc-----CChHHHHHHHHHcCCCHHHHHHH
Confidence 322334567999999999999988875421 11334567889999999755444
No 160
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.011 Score=70.25 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=81.9
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHc
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1728)
....+.|||..|.|||.|++++.+.......=..+++++ .+.....++..+.. ..+...++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 368999999999999999999999986442223455553 33344444444321 1122333333
Q ss_pred CCcEEEEEeCCCCccc---cc-cccCCCcccccccCCCCCCeEEEEEeCCchhhc--------ccCCCccEEEccCCCHH
Q 000280 256 VKRVLVILDNIWKLLN---LD-AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC--------NDMNSQKFFLIEVLSYE 323 (1728)
Q Consensus 256 ~~~~LlVlDdv~~~~~---~~-~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~--------~~~~~~~~~~l~~L~~~ 323 (1728)
.-=++++||++-... |+ .+...|.. + ...|-.||+|++...-.- ......-++.+++.+.+
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~----l--~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e 247 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNA----L--LENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDE 247 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHH----H--HhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHH
Confidence 223888999976532 22 22222221 1 223337999986542211 03444678999999999
Q ss_pred HHHHHHHHHhC
Q 000280 324 EAWCLFEKIVG 334 (1728)
Q Consensus 324 ea~~Lf~~~~~ 334 (1728)
.....+.+++.
T Consensus 248 ~r~aiL~kka~ 258 (408)
T COG0593 248 TRLAILRKKAE 258 (408)
T ss_pred HHHHHHHHHHH
Confidence 99999998773
No 161
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.36 E-value=0.0025 Score=80.78 Aligned_cols=182 Identities=14% Similarity=0.134 Sum_probs=96.9
Q ss_pred cCccccccchHHHHHHHHHHHh---c---------CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLK---D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP 219 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~---~---------~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 219 (1728)
.....+++|-+...+++.+++. + ...+-+.++|++|+|||++|+.+++.... . ++.++.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~--~-----~~~i~~-- 121 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--P-----FFSISG-- 121 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--C-----eeeccH--
Confidence 3345567888776665554443 1 12456889999999999999999987521 1 222221
Q ss_pred CHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcccc------------ccccCCCcccccccC
Q 000280 220 DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNL------------DAVGIPFGDVKKERN 287 (1728)
Q Consensus 220 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~------------~~l~~~~~~~~~~~~ 287 (1728)
.++.. ... .. .......+.+......+.+|+|||++....- ......+-...+..
T Consensus 122 --~~~~~----~~~-----g~-~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~- 188 (495)
T TIGR01241 122 --SDFVE----MFV-----GV-GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF- 188 (495)
T ss_pred --HHHHH----HHh-----cc-cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc-
Confidence 11111 110 01 1122333444444457789999999764110 00000000000000
Q ss_pred CCCCCeEEEEEeCCchhhcc---c-CCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000280 288 DDRSRCTVLLTSRNRDVLCN---D-MNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1728)
Q Consensus 288 ~~~~g~~ilvTtR~~~v~~~---~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1728)
....+..||.||........ . -.-...+.++..+.++-.++|+.+........+ ....++++.+.|.-
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 12334556666655432211 1 123568899999999999999888753222111 12447888888744
No 162
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00055 Score=88.97 Aligned_cols=157 Identities=15% Similarity=0.216 Sum_probs=94.4
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhcc-C---CCeeEEEEECCCCCHHHHHHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK-L---FDKVVFVEVTQTPDLQTIQNKLSSD 231 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~~~i~~~ 231 (1728)
..++||+++++++++.|.......+.++|.+|+|||++|+.+++...... . .++.+|.. +...+ ..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc-
Confidence 46899999999999999865556677999999999999999998764322 1 13444421 12111 11
Q ss_pred hhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc----------ccccccCCCcccccccCCCCCCeEEEEEeCC
Q 000280 232 LELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL----------NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN 301 (1728)
Q Consensus 232 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~ 301 (1728)
+... ....+.....+.+.+.+.++.+|++|+++... +...+..++- ....-+||-+|..
T Consensus 256 -G~~~--~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--------~~g~i~vIgATt~ 324 (758)
T PRK11034 256 -GTKY--RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--------SSGKIRVIGSTTY 324 (758)
T ss_pred -ccch--hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--------hCCCeEEEecCCh
Confidence 1110 11233455556666655577899999997541 1111111111 1223455555544
Q ss_pred chhhcc------cCCCccEEEccCCCHHHHHHHHHHHh
Q 000280 302 RDVLCN------DMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1728)
Q Consensus 302 ~~v~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 333 (1728)
.+.... .......+.++..+.+++.++++...
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 332110 11123579999999999999998765
No 163
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.0032 Score=68.71 Aligned_cols=176 Identities=19% Similarity=0.164 Sum_probs=101.1
Q ss_pred cCccccccchHHHHHHHHHHHh-----cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCH--HHH
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLK-----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDL--QTI 224 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~ 224 (1728)
|.....|+|.++..+++.=.+. +...-.|.++|++|.||||||.-+++...+. + - +.+.+-+ ..-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k--~tsGp~leK~gD 93 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----K--ITSGPALEKPGD 93 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----E--ecccccccChhh
Confidence 4456789999988888765554 3456799999999999999999999998543 1 1 1111111 001
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc-cccccc-CCCcc-cccccCCCCCCeE-------
Q 000280 225 QNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL-NLDAVG-IPFGD-VKKERNDDRSRCT------- 294 (1728)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-~~~~l~-~~~~~-~~~~~~~~~~g~~------- 294 (1728)
+..|+.. | .+.=++.+|.++... ..+++. .+..+ -++..++.+.++|
T Consensus 94 laaiLt~---------------------L--e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 94 LAAILTN---------------------L--EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred HHHHHhc---------------------C--CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 1111111 2 133445556665431 111110 00000 0001111233333
Q ss_pred ----EEEEeCCchhhcc-cCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHH
Q 000280 295 ----VLLTSRNRDVLCN-DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 359 (1728)
Q Consensus 295 ----ilvTtR~~~v~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 359 (1728)
|=.|||.-.+..- ......+.+++-.+.+|-.+...+.++. ....-.++.|.+|+++..|-|--
T Consensus 151 pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-l~i~i~~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-LGIEIDEEAALEIARRSRGTPRI 219 (332)
T ss_pred CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-hCCCCChHHHHHHHHhccCCcHH
Confidence 3458887655432 1122457889999999999999988842 12222356789999999999953
No 164
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=0.00011 Score=94.55 Aligned_cols=57 Identities=28% Similarity=0.556 Sum_probs=24.6
Q ss_pred CCCcccEEEecCccCCCccccccccCCceeecCCCCCCccc--hHhhccccccEEeccC
Q 000280 581 CLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLP--REIGQLVQLRLLDLRN 637 (1728)
Q Consensus 581 ~L~~Lr~L~L~~~~i~~~~~i~~L~~L~~L~Ls~~~i~~LP--~~i~~L~~L~~L~L~~ 637 (1728)
++++|+.||++++.++.+..|++|++|++|.+++-.+..-+ ..+-+|++|++||+|.
T Consensus 171 sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred ccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 34444444444444444444444444444444443333211 2334444444444444
No 165
>PRK10536 hypothetical protein; Provisional
Probab=97.31 E-value=0.0028 Score=70.00 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=45.0
Q ss_pred CccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEE
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv 213 (1728)
.+...+.+|......++.++.+. ..|.+.|.+|+|||+||.+++.+.-..+.|+.++..
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~ 110 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVT 110 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEe
Confidence 34456678888899999988764 499999999999999999999865333446555443
No 166
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.056 Score=59.20 Aligned_cols=180 Identities=18% Similarity=0.171 Sum_probs=101.3
Q ss_pred cccccchHHHHHHHHHHHh----------c--CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHH
Q 000280 155 YEQFDSRMKIFQNIMEVLK----------D--TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ 222 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~----------~--~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (1728)
...+.|-+...+.|.++.. . ..-+-|.++|++|.||+-||++|+.... .-|++|+...-+.
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-------STFFSvSSSDLvS 204 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-------STFFSVSSSDLVS 204 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-------CceEEeehHHHHH
Confidence 3456788878877777754 1 1357899999999999999999999873 1244555431111
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc---------cccccccCCCcccccccCCCCCCe
Q 000280 223 TIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL---------LNLDAVGIPFGDVKKERNDDRSRC 293 (1728)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~---------~~~~~l~~~~~~~~~~~~~~~~g~ 293 (1728)
..+| ..+.++..+++--++.++-+|.+|.|+.. +.-+.|...|---.+.......|.
T Consensus 205 -------KWmG-------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gv 270 (439)
T KOG0739|consen 205 -------KWMG-------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGV 270 (439)
T ss_pred -------HHhc-------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCce
Confidence 1222 22355666676666789999999999754 111222211111011111244555
Q ss_pred EEEEEeCCchhhcccC--CCccEEEccCCCHHHHH-HHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000280 294 TVLLTSRNRDVLCNDM--NSQKFFLIEVLSYEEAW-CLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1728)
Q Consensus 294 ~ilvTtR~~~v~~~~~--~~~~~~~l~~L~~~ea~-~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1728)
-|+=.|..+-+....+ ...+.|.+ ||++..|. .+|+-+.|+.... -.++-.++++++..|.-
T Consensus 271 LVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~-LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 271 LVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHV-LTEQDFKELARKTEGYS 335 (439)
T ss_pred EEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCccc-cchhhHHHHHhhcCCCC
Confidence 5555676665544311 11233333 45555554 5677777753322 12333566777776654
No 167
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0036 Score=73.35 Aligned_cols=196 Identities=13% Similarity=0.134 Sum_probs=111.5
Q ss_pred ccccchHHHHHHHHHHHhcCC-ceEEEEEcCCcchHHHHHHHHHHHHHhcc-------------CCCeeEEEEECCCCCH
Q 000280 156 EQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDK-------------LFDKVVFVEVTQTPDL 221 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~~~-~~~i~I~G~gG~GKTtLa~~~~~~~~~~~-------------~f~~~~wv~~~~~~~~ 221 (1728)
..++|.+..++.+.+.+..+. .+...++|+.|+||+++|..+++..--.. ...-..|+.-.-..+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 467899999999999998766 47899999999999999999998763221 1112334421100000
Q ss_pred HHHHHHHHHHhhhhhc-cCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeE
Q 000280 222 QTIQNKLSSDLELEFK-QNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCT 294 (1728)
Q Consensus 222 ~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ 294 (1728)
..+-..-+...+.... ...-..+.++.+.+.+. .+++-++|+|+++... ..+.+...+.+ -. .+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE-------Pp-~~~ 155 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-------PG-NGT 155 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC-------CC-CCe
Confidence 0000111111110000 00111223344555543 2577899999997763 23333333332 12 334
Q ss_pred EEEEe-CCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000280 295 VLLTS-RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1728)
Q Consensus 295 ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1728)
+|++| +...+..........+++.++++++..+.+.+....... ......++..++|.|..+..+
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHHH
Confidence 55444 444444323334678999999999999999886532111 111357899999999765443
No 168
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.28 E-value=0.0025 Score=85.27 Aligned_cols=158 Identities=13% Similarity=0.202 Sum_probs=91.9
Q ss_pred ccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccC----CCe-eEEEEECCCCCHHHHHHHH
Q 000280 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKL----FDK-VVFVEVTQTPDLQTIQNKL 228 (1728)
Q Consensus 154 ~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~----f~~-~~wv~~~~~~~~~~~~~~i 228 (1728)
....++||+.++..+++.|.......+.++|.+|+|||++|+.++.+...... .+. +++++++. +.
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~--- 246 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV--- 246 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh---
Confidence 34568999999999999998766677889999999999999999998743211 122 23332222 11
Q ss_pred HHHhhhhhccCCCHHHHHHHHHHHHH-cCCcEEEEEeCCCCccc---------cccccCCCcccccccCCCCCCeEEEEE
Q 000280 229 SSDLELEFKQNENVFQRAEKLRQRLK-NVKRVLVILDNIWKLLN---------LDAVGIPFGDVKKERNDDRSRCTVLLT 298 (1728)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~g~~ilvT 298 (1728)
.. ... ....++....+.+.+. .+++.+|++|+++.... ...+..|.- ....-++|-+
T Consensus 247 -ag--~~~--~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--------~~g~l~~Iga 313 (857)
T PRK10865 247 -AG--AKY--RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--------ARGELHCVGA 313 (857)
T ss_pred -hc--cch--hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--------hcCCCeEEEc
Confidence 00 000 1122334444444443 35789999999976521 111211111 1223455555
Q ss_pred eCCchhh------cccCCCccEEEccCCCHHHHHHHHHHHh
Q 000280 299 SRNRDVL------CNDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1728)
Q Consensus 299 tR~~~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 333 (1728)
|...+.. .........+.+...+.++...+++...
T Consensus 314 Tt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 314 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 5444321 1011123356777779999999887655
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.27 E-value=0.0023 Score=86.07 Aligned_cols=158 Identities=11% Similarity=0.201 Sum_probs=93.1
Q ss_pred ccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCC----CeeEE-EEECCCCCHHHHHHHH
Q 000280 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF----DKVVF-VEVTQTPDLQTIQNKL 228 (1728)
Q Consensus 154 ~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f----~~~~w-v~~~~~~~~~~~~~~i 228 (1728)
....++||+.++.++++.|.......+.++|.+|+|||++|+.++++......+ +..+| +++ ..+.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l~--- 241 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GALI--- 241 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHHh---
Confidence 345689999999999999986666677899999999999999999987432111 22233 221 1111
Q ss_pred HHHhhhhhccCCCHHHHHHHHHHHHHc-CCcEEEEEeCCCCccc---------cccccCCCcccccccCCCCCCeEEEEE
Q 000280 229 SSDLELEFKQNENVFQRAEKLRQRLKN-VKRVLVILDNIWKLLN---------LDAVGIPFGDVKKERNDDRSRCTVLLT 298 (1728)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~g~~ilvT 298 (1728)
. +... ....+.....+.+.+.+ +++.+|++|+++.... ...+..+. + ....-++|-+
T Consensus 242 -a--~~~~--~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~-------l-~~g~i~~Iga 308 (852)
T TIGR03346 242 -A--GAKY--RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA-------L-ARGELHCIGA 308 (852)
T ss_pred -h--cchh--hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh-------h-hcCceEEEEe
Confidence 0 0000 11233444555555542 4689999999986521 11111111 1 1223445555
Q ss_pred eCCchhhc------ccCCCccEEEccCCCHHHHHHHHHHHh
Q 000280 299 SRNRDVLC------NDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1728)
Q Consensus 299 tR~~~v~~------~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 333 (1728)
|.....-. ........+.++..+.++...++....
T Consensus 309 Tt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred CcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 54443211 011223568899999999999887665
No 170
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.25 E-value=0.002 Score=79.17 Aligned_cols=154 Identities=14% Similarity=0.161 Sum_probs=91.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1728)
...+.|+|..|+|||+||+++++..... ...++|++ ..++...+...+... ....+++.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~---------~~~~f~~~~~-- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG---------EMQRFRQFYR-- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc---------hHHHHHHHcc--
Confidence 3578999999999999999999988532 24456664 233444444443211 1122333332
Q ss_pred CcEEEEEeCCCCcccc----ccccCCCcccccccCCCCCCeEEEEEeCCc-h--------hhcccCCCccEEEccCCCHH
Q 000280 257 KRVLVILDNIWKLLNL----DAVGIPFGDVKKERNDDRSRCTVLLTSRNR-D--------VLCNDMNSQKFFLIEVLSYE 323 (1728)
Q Consensus 257 ~~~LlVlDdv~~~~~~----~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~-~--------v~~~~~~~~~~~~l~~L~~~ 323 (1728)
..-+|++||+...... +.+...+.. + ...|-.||+||... . +.+ .......+.+.+++.+
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~----l--~~~~k~IIlts~~~p~~l~~l~~rL~S-R~~~Gl~~~l~~pd~e 274 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNS----L--HTEGKLIVISSTCAPQDLKAMEERLIS-RFEWGIAIPLHPLTKE 274 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHH----H--HHCCCcEEEecCCCHHHHhhhHHHHHh-hhcCCeEEecCCCCHH
Confidence 4458889998765321 122211111 1 11345688887542 1 111 2334568999999999
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000280 324 EAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1728)
Q Consensus 324 ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1728)
+-..++++++.... ..-.++++.-|++.+.|.-
T Consensus 275 ~r~~iL~~k~~~~~-~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 275 GLRSFLERKAEALS-IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCH
Confidence 99999998884321 1222566777877777544
No 171
>CHL00176 ftsH cell division protein; Validated
Probab=97.23 E-value=0.0073 Score=77.35 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=96.1
Q ss_pred cccccchHHHHHHH---HHHHhcC---------CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHH
Q 000280 155 YEQFDSRMKIFQNI---MEVLKDT---------NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ 222 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l---~~~L~~~---------~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (1728)
..++.|.++..+++ ++++.+. ..+-|.++|++|+|||++|+++++.... -|+.++. .
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-------p~i~is~----s 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-------PFFSISG----S 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeeeccH----H
Confidence 34566766555544 4444422 2457899999999999999999987621 1333321 1
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccCCCccccccc
Q 000280 223 TIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN----------------LDAVGIPFGDVKKER 286 (1728)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~~~~~~~~~ 286 (1728)
++.. ... . ........+.+......+++|+|||++.... +..+...+.. .
T Consensus 251 ~f~~----~~~-----g-~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg----~ 316 (638)
T CHL00176 251 EFVE----MFV-----G-VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG----F 316 (638)
T ss_pred HHHH----Hhh-----h-hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc----c
Confidence 1111 000 0 0112233344444456889999999975410 1111111110 0
Q ss_pred CCCCCCeEEEEEeCCchhhccc-C---CCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCC
Q 000280 287 NDDRSRCTVLLTSRNRDVLCND-M---NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGL 356 (1728)
Q Consensus 287 ~~~~~g~~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 356 (1728)
....+..||.||......... . .-...+.++..+.++-.++++.++......+ ......+++.+.|.
T Consensus 317 -~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 317 -KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred -cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 123455666676554332211 1 2346889999999999999998885422111 23456788888873
No 172
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.21 E-value=0.0026 Score=67.84 Aligned_cols=179 Identities=13% Similarity=0.190 Sum_probs=104.3
Q ss_pred ccccchHHHHH---HHHHHHhcC------CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHH
Q 000280 156 EQFDSRMKIFQ---NIMEVLKDT------NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQN 226 (1728)
Q Consensus 156 ~~~~gR~~~~~---~l~~~L~~~------~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (1728)
.+++|.++... -|++.|.++ .++-|..+|++|.|||.+|+++++..++- ++.+.. .++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp-------~l~vka----t~l-- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP-------LLLVKA----TEL-- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc-------eEEech----HHH--
Confidence 45678776654 367777754 47899999999999999999999987432 222211 111
Q ss_pred HHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc---ccccccCCCcccccc------cCCCCCCeEEEE
Q 000280 227 KLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL---NLDAVGIPFGDVKKE------RNDDRSRCTVLL 297 (1728)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~~------~~~~~~g~~ilv 297 (1728)
|....| +...++.++.++-.+..++++.+|.++... .++.++......+.. .+..+.|...|-
T Consensus 188 -iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 188 -IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 111111 234566677777776799999999987651 112222111111111 122456666666
Q ss_pred EeCCchhhcccC--CCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000280 298 TSRNRDVLCNDM--NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1728)
Q Consensus 298 TtR~~~v~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1728)
.|-+.+...... .....++..--+++|-.+++..++..-.-+-+ .-.+.++++.+|.-
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~S 319 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGMS 319 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCCC
Confidence 666665544212 22346666677888999999888842211111 11445667766643
No 173
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.20 E-value=0.001 Score=84.08 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=42.5
Q ss_pred cCccccccchHHHHHHHHHHHhcC-----CceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKDT-----NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~~-----~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
|.....++|.++.++++..++.+. ..+++.|+|++|+||||+++.+++...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 455677899999999999998742 335799999999999999999998763
No 174
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.18 E-value=0.0033 Score=76.44 Aligned_cols=138 Identities=21% Similarity=0.244 Sum_probs=87.1
Q ss_pred cchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhcc
Q 000280 159 DSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ 238 (1728)
Q Consensus 159 ~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 238 (1728)
..|...+.++.+.+..... ++.|.|+-++||||+++.+.+..... .++++..+...-..-..+....
T Consensus 20 ~~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~~------- 86 (398)
T COG1373 20 IERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLRA------- 86 (398)
T ss_pred hhHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHHH-------
Confidence 3455566666666654333 99999999999999997766655322 5666544432111111111111
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCcccccccCCCCCCeEEEEEeCCchhhcc-----cCCCcc
Q 000280 239 NENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN-----DMNSQK 313 (1728)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~-----~~~~~~ 313 (1728)
+. .+...++..|+||.|....+|+.....+.+ .+.. +|++|+-+...... ..|...
T Consensus 87 ----------~~-~~~~~~~~yifLDEIq~v~~W~~~lk~l~d-------~~~~-~v~itgsss~ll~~~~~~~L~GR~~ 147 (398)
T COG1373 87 ----------YI-ELKEREKSYIFLDEIQNVPDWERALKYLYD-------RGNL-DVLITGSSSSLLSKEISESLAGRGK 147 (398)
T ss_pred ----------HH-HhhccCCceEEEecccCchhHHHHHHHHHc-------cccc-eEEEECCchhhhccchhhhcCCCce
Confidence 11 111127789999999999999887665555 4444 78888877654332 345567
Q ss_pred EEEccCCCHHHHHHH
Q 000280 314 FFLIEVLSYEEAWCL 328 (1728)
Q Consensus 314 ~~~l~~L~~~ea~~L 328 (1728)
.+.+-||+-.|-..+
T Consensus 148 ~~~l~PlSF~Efl~~ 162 (398)
T COG1373 148 DLELYPLSFREFLKL 162 (398)
T ss_pred eEEECCCCHHHHHhh
Confidence 899999999987664
No 175
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.17 E-value=0.0098 Score=73.63 Aligned_cols=182 Identities=14% Similarity=0.128 Sum_probs=94.4
Q ss_pred cccccchHHHHHHHHHHHh-------c---CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHH
Q 000280 155 YEQFDSRMKIFQNIMEVLK-------D---TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTI 224 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~-------~---~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 224 (1728)
..++.|.+...+.+.+... . ...+-|.++|++|+|||.+|+.+++.... .| +-++.+ .+
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~--~~---~~l~~~------~l 295 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL--PL---LRLDVG------KL 295 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CE---EEEEhH------Hh
Confidence 3456777766655554321 1 23567999999999999999999998732 11 222211 11
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcccc-ccccCC------CcccccccCCCCCCeEEEE
Q 000280 225 QNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNL-DAVGIP------FGDVKKERNDDRSRCTVLL 297 (1728)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~-~~l~~~------~~~~~~~~~~~~~g~~ilv 297 (1728)
. .... . ..+.....+.+......+++|++|+++....- ..-... +..+.........+.-||.
T Consensus 296 ~----~~~v-----G-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 296 F----GGIV-----G-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred c----cccc-----C-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 1 1100 1 11223344444444458999999999754110 000000 0000000000223334555
Q ss_pred EeCCchhhcc----cCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000280 298 TSRNRDVLCN----DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1728)
Q Consensus 298 TtR~~~v~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1728)
||.+...... .-.-+..+.++.-+.++-.++|+.+............-...+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 6655432111 11235688899999999999999887532211100112456777777765
No 176
>PRK06620 hypothetical protein; Validated
Probab=97.16 E-value=0.0011 Score=73.04 Aligned_cols=137 Identities=18% Similarity=0.043 Sum_probs=80.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCC
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (1728)
+.+.|+|++|+|||+|++.+++... ..++. .... . . +... .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-------~~~~~--~~~~----------------~----~--------~~~~--~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-------AYIIK--DIFF----------------N----E--------EILE--K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-------CEEcc--hhhh----------------c----h--------hHHh--c
Confidence 6699999999999999998776542 12221 0000 0 0 0111 3
Q ss_pred cEEEEEeCCCCccccccccCCCcccccccCCCCCCeEEEEEeCCchhhc------ccCCCccEEEccCCCHHHHHHHHHH
Q 000280 258 RVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC------NDMNSQKFFLIEVLSYEEAWCLFEK 331 (1728)
Q Consensus 258 ~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~------~~~~~~~~~~l~~L~~~ea~~Lf~~ 331 (1728)
.-++++||++...+ ..+ ..+.... ...|..||+|++.....- ..+...-++++++++.++-..++++
T Consensus 86 ~d~lliDdi~~~~~-~~l----f~l~N~~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k 158 (214)
T PRK06620 86 YNAFIIEDIENWQE-PAL----LHIFNII--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFK 158 (214)
T ss_pred CCEEEEeccccchH-HHH----HHHHHHH--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHH
Confidence 35788899974321 111 1111111 134668999887553311 1233455899999999999888888
Q ss_pred HhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000280 332 IVGDSAKASDFRVIADEIVRRCGGLPVAIK 361 (1728)
Q Consensus 332 ~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 361 (1728)
.+... .-.--+++++-|++.+.|---.+.
T Consensus 159 ~~~~~-~l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 159 HFSIS-SVTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred HHHHc-CCCCCHHHHHHHHHHccCCHHHHH
Confidence 77421 112235778888888877654433
No 177
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.16 E-value=0.00051 Score=70.09 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=42.5
Q ss_pred EEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCC-c
Q 000280 180 IGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK-R 258 (1728)
Q Consensus 180 i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~ 258 (1728)
|.|+|+.|+||||+|+.+++.... .++.++.+...+. . ..+....+..+.+..++.. +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~---------------~-~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS---------------Y-AGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS---------------S-TTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc---------------c-ccccccccccccccccccccc
Confidence 579999999999999999998731 2344443321100 0 1222233334444443344 8
Q ss_pred EEEEEeCCCCc
Q 000280 259 VLVILDNIWKL 269 (1728)
Q Consensus 259 ~LlVlDdv~~~ 269 (1728)
.+|++||++..
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999776
No 178
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.13 E-value=0.00022 Score=91.79 Aligned_cols=105 Identities=22% Similarity=0.248 Sum_probs=80.2
Q ss_pred CCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEecCccCC---CccccccccCCc
Q 000280 532 ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVG---DVAIVGQLKKLE 608 (1728)
Q Consensus 532 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~---~~~~i~~L~~L~ 608 (1728)
-+|.||+|.+.+-.-.... ....+.++++|+.||+|+++++.+ ..++.|++|++|.+.+=.+. ++..+.+|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 5789999998764111111 234567899999999999999988 67999999999999887765 367889999999
Q ss_pred eeecCCCCCCccchHh-------hccccccEEeccCc
Q 000280 609 ILSFRNSDIQQLPREI-------GQLVQLRLLDLRNC 638 (1728)
Q Consensus 609 ~L~Ls~~~i~~LP~~i-------~~L~~L~~L~L~~~ 638 (1728)
+||+|...-..-|.-+ ..|++||.||.|++
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 9999987544444211 34778888888776
No 179
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.13 E-value=0.012 Score=64.20 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=41.0
Q ss_pred CccccccchHHHHHHHHHHHh----cCCceEEEEEcCCcchHHHHHHHHHHHHHhc
Q 000280 153 TAYEQFDSRMKIFQNIMEVLK----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~----~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~ 204 (1728)
.....++|-+...+.|++-.. ......+.+||..|+|||++++++.+....+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 345678898888777765443 4566788999999999999999999988644
No 180
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0066 Score=74.81 Aligned_cols=156 Identities=21% Similarity=0.242 Sum_probs=94.1
Q ss_pred cccchHHHHHHHHHHHh------cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHH
Q 000280 157 QFDSRMKIFQNIMEVLK------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1728)
Q Consensus 157 ~~~gR~~~~~~l~~~L~------~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 230 (1728)
+-+|-++..+.|+++|. +-+-+++.++|++|||||.|++.+++-.. +.| +-++++.-.|..++...=-.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--Rkf---vR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKF---VRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCE---EEEecCccccHHHhcccccc
Confidence 34699999999999987 22347999999999999999999999873 334 44556666666555321111
Q ss_pred HhhhhhccCCCHHHHHHHHHHHHH--cCCcEEEEEeCCCCcc-c-----------------cccccCCCcccccccCCCC
Q 000280 231 DLELEFKQNENVFQRAEKLRQRLK--NVKRVLVILDNIWKLL-N-----------------LDAVGIPFGDVKKERNDDR 290 (1728)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~--~~~~~LlVlDdv~~~~-~-----------------~~~l~~~~~~~~~~~~~~~ 290 (1728)
-+| ... .++.+.++ +.++-+++||.|+... + =..|..+.-++ .-
T Consensus 399 YIG-------amP---GrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev------~y 462 (782)
T COG0466 399 YIG-------AMP---GKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEV------PY 462 (782)
T ss_pred ccc-------cCC---hHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccC------cc
Confidence 111 111 23334443 2488999999998651 1 01111111110 11
Q ss_pred CCeEEE-EEeCCc-h-hhcccCCCccEEEccCCCHHHHHHHHHHHh
Q 000280 291 SRCTVL-LTSRNR-D-VLCNDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1728)
Q Consensus 291 ~g~~il-vTtR~~-~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 333 (1728)
.=|+|+ |||-+. + +....++.-.++++.+.+++|-.+.-+++.
T Consensus 463 DLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 463 DLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred chhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 224455 444332 1 222134456799999999999888877765
No 181
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.027 Score=68.89 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=87.5
Q ss_pred cccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCH
Q 000280 155 YEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDL 221 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~~-------------~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 221 (1728)
...+-|-++...+|-+.+.- ...+-|..+|++|+|||++|+++++.... .| +.+..+
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~--nF-----lsvkgp--- 502 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM--NF-----LSVKGP--- 502 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC--Ce-----eeccCH---
Confidence 34555677666666555541 35678999999999999999999998743 23 333332
Q ss_pred HHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccccc-------------cccCCCcccccccCC
Q 000280 222 QTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLD-------------AVGIPFGDVKKERND 288 (1728)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~-------------~l~~~~~~~~~~~~~ 288 (1728)
+++.... ...+..+..++++-++-...+|.||.++...--+ .+...+.. +.
T Consensus 503 -----EL~sk~v------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG-----~e 566 (693)
T KOG0730|consen 503 -----ELFSKYV------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDG-----LE 566 (693)
T ss_pred -----HHHHHhc------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccc-----cc
Confidence 1222211 1223445556666555677999999987652111 11111111 00
Q ss_pred CCCCeEEEE-EeCCchhhcccCC---CccEEEccCCCHHHHHHHHHHHhCC
Q 000280 289 DRSRCTVLL-TSRNRDVLCNDMN---SQKFFLIEVLSYEEAWCLFEKIVGD 335 (1728)
Q Consensus 289 ~~~g~~ilv-TtR~~~v~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~ 335 (1728)
..++--||- |-|...+-...+. -+..+.++.-+.+.-.++|+.++..
T Consensus 567 ~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 567 ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 112222332 3344433332233 3567778777777778999998854
No 182
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.023 Score=69.72 Aligned_cols=157 Identities=19% Similarity=0.189 Sum_probs=94.1
Q ss_pred ccccchHHHHHHHHHHHh------cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLK------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLS 229 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~------~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (1728)
++-+|.++..+.|++++. ..+-+++..+|++|||||.+|+.+++-.. +.| +-++++.-.|..+|-..=-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkF---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKF---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--Cce---EEEeccccccHHhhcccce
Confidence 455799999999999986 23457999999999999999999999873 223 3456777667666532111
Q ss_pred HHhhhhhccCCCHHHHHHHHHHHHH--cCCcEEEEEeCCCCcc------------------ccccccCCCcccccccCCC
Q 000280 230 SDLELEFKQNENVFQRAEKLRQRLK--NVKRVLVILDNIWKLL------------------NLDAVGIPFGDVKKERNDD 289 (1728)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~~LlVlDdv~~~~------------------~~~~l~~~~~~~~~~~~~~ 289 (1728)
.-.| ..-.++.+.|+ +..+-|+.||.|+... +=..|..++-+ . -
T Consensus 486 TYVG----------AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLd---V---p 549 (906)
T KOG2004|consen 486 TYVG----------AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLD---V---P 549 (906)
T ss_pred eeec----------cCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccc---c---c
Confidence 1111 11124455555 2478899999997651 00111111111 0 0
Q ss_pred CCCeEEEEEeCCchhhcc---cCCCccEEEccCCCHHHHHHHHHHHh
Q 000280 290 RSRCTVLLTSRNRDVLCN---DMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1728)
Q Consensus 290 ~~g~~ilvTtR~~~v~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~~ 333 (1728)
-.=|||++...-..+... ..+.-..|++.+...+|-.+.-.++.
T Consensus 550 ~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 550 VDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred cchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 123567654333222220 12334688999999999877666554
No 183
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.008 Score=71.48 Aligned_cols=144 Identities=12% Similarity=0.132 Sum_probs=85.4
Q ss_pred ccc-hHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhcc--------------------CCCeeEEEEE
Q 000280 158 FDS-RMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK--------------------LFDKVVFVEV 215 (1728)
Q Consensus 158 ~~g-R~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~ 215 (1728)
++| .+..++.+.+.+..+++ +...++|+.|+||||+|+.+++..--.. |.|.. ++..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~-~i~~ 85 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH-LVAP 85 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE-Eecc
Confidence 455 67778888888876554 5668999999999999999988763211 22221 1111
Q ss_pred C-CCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCccc--cccccCCCcccccccCC
Q 000280 216 T-QTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLLN--LDAVGIPFGDVKKERND 288 (1728)
Q Consensus 216 ~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~ 288 (1728)
. ....+ +.+..+.+.+. .+++-++|+|+++.... .+.+...+.+
T Consensus 86 ~~~~i~i----------------------d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE------- 136 (329)
T PRK08058 86 DGQSIKK----------------------DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE------- 136 (329)
T ss_pred ccccCCH----------------------HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-------
Confidence 1 11111 12222333322 24666899999977632 2333333332
Q ss_pred CCCCeEEEEEeCCch-hhcccCCCccEEEccCCCHHHHHHHHHH
Q 000280 289 DRSRCTVLLTSRNRD-VLCNDMNSQKFFLIEVLSYEEAWCLFEK 331 (1728)
Q Consensus 289 ~~~g~~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 331 (1728)
-..++.+|++|.+.. +..........+++.+++.++..+.+.+
T Consensus 137 Pp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 PSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 234666776765543 3332233467899999999999888865
No 184
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.014 Score=69.99 Aligned_cols=176 Identities=15% Similarity=0.165 Sum_probs=102.5
Q ss_pred cccccchHHHHHHHHHHHh---c---------CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHH
Q 000280 155 YEQFDSRMKIFQNIMEVLK---D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ 222 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~---~---------~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (1728)
...+-|.++.+.++.+.+. . ...+-|.++|++|+|||.||++++++..+ -++.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v-------Pf~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV-------PFLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC-------ceEeecch----
Confidence 4567899999998888875 1 23577899999999999999999998843 24444443
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc---cc----------ccccCCCcccccccCCC
Q 000280 223 TIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL---NL----------DAVGIPFGDVKKERNDD 289 (1728)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---~~----------~~l~~~~~~~~~~~~~~ 289 (1728)
+|..+..+ ..++.+.++++.-....++++++|+++... +| ..+...+.. +...
T Consensus 258 ----eivSGvSG------ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~----l~~~ 323 (802)
T KOG0733|consen 258 ----EIVSGVSG------ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDE----LSNE 323 (802)
T ss_pred ----hhhcccCc------ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhc----cccc
Confidence 23333322 123455666666666799999999997651 11 111111111 1101
Q ss_pred ---CCCeEEEE-EeCCchhhcc--cCC-CccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000280 290 ---RSRCTVLL-TSRNRDVLCN--DMN-SQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1728)
Q Consensus 290 ---~~g~~ilv-TtR~~~v~~~--~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1728)
+.+.-||= |+|-..+-.. ..| -++.|.++.-++.+-.++++..+..-....++. .++|++..-|.-
T Consensus 324 ~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d--~~qlA~lTPGfV 396 (802)
T KOG0733|consen 324 KTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD--FKQLAKLTPGFV 396 (802)
T ss_pred ccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC--HHHHHhcCCCcc
Confidence 22322232 4454433221 122 357888888888888888877773211111111 346777666643
No 185
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0068 Score=76.42 Aligned_cols=178 Identities=13% Similarity=0.099 Sum_probs=111.0
Q ss_pred ccccchHH---HHHHHHHHHhcC---------CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHH
Q 000280 156 EQFDSRMK---IFQNIMEVLKDT---------NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQT 223 (1728)
Q Consensus 156 ~~~~gR~~---~~~~l~~~L~~~---------~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 223 (1728)
.++.|-++ |++++++.|.++ -++=|.++|++|+|||-||+++|....+ =|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH-----
Confidence 34566554 566666667632 2567899999999999999999998743 35555542
Q ss_pred HHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccccc-----------------cccCCCccccccc
Q 000280 224 IQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLD-----------------AVGIPFGDVKKER 286 (1728)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~-----------------~l~~~~~~~~~~~ 286 (1728)
+..+.+... ...++..+...-+...+.++.+|+++...--. .+...... .
T Consensus 379 ---EFvE~~~g~------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg----f 445 (774)
T KOG0731|consen 379 ---EFVEMFVGV------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG----F 445 (774)
T ss_pred ---HHHHHhccc------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC----C
Confidence 222222211 13456666766666789999999987652211 11111111 0
Q ss_pred CCCCCCeEEEEEeCCchhhcc---cCC-CccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHH
Q 000280 287 NDDRSRCTVLLTSRNRDVLCN---DMN-SQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1728)
Q Consensus 287 ~~~~~g~~ilvTtR~~~v~~~---~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1728)
....+-.++-+|...++... ..| -++.+.++.-+..+..++|+-++.......+..++.+ |+...-|.+=|.
T Consensus 446 -~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 446 -ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred -cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 01223334445665555433 122 2578888888999999999999975444455666676 999988888553
No 186
>PRK08116 hypothetical protein; Validated
Probab=96.97 E-value=0.0057 Score=70.16 Aligned_cols=105 Identities=23% Similarity=0.266 Sum_probs=59.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCC
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (1728)
..+.++|..|+|||.||.++++....+ ...++|++ ..+++..+........ ... ...+.+.+. +.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~--~~~----~~~~~~~l~-~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG--KED----ENEIIRSLV-NA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc--ccc----HHHHHHHhc-CC
Confidence 458999999999999999999998643 34566765 3445555544432111 111 223445554 23
Q ss_pred cEEEEEeCCCC--ccccccccCCCcccccccCCCCCCeEEEEEeCCc
Q 000280 258 RVLVILDNIWK--LLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR 302 (1728)
Q Consensus 258 ~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~ 302 (1728)
. ||||||+.. ..+|..- .+-.+.+.+ ...|..+||||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~--~l~~iin~r--~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWARE--KVYNIIDSR--YRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHH--HHHHHHHHH--HHCCCCEEEECCCC
Confidence 3 899999943 3444220 011111111 12345688888543
No 187
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.015 Score=67.92 Aligned_cols=173 Identities=15% Similarity=0.155 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhcc-----------------CCCeeEEEEECCCCCHHHH
Q 000280 163 KIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK-----------------LFDKVVFVEVTQTPDLQTI 224 (1728)
Q Consensus 163 ~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~-----------------~f~~~~wv~~~~~~~~~~~ 224 (1728)
...+.+...+..+.+ +.+.++|+.|+||+++|..+++..--.. |.| +.||.......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~---- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT---- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc----
Confidence 345667777765554 4688999999999999999998763221 111 11221000000
Q ss_pred HHHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEEE
Q 000280 225 QNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLT 298 (1728)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilvT 298 (1728)
+.... ..-..+.++.+.+.+. .+++-++|+|+++... .-+.+...+.+ -..++.+|++
T Consensus 86 --------~~k~~-~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~~~fiL~ 149 (319)
T PRK08769 86 --------GDKLR-TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-------PSPGRYLWLI 149 (319)
T ss_pred --------ccccc-ccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-------CCCCCeEEEE
Confidence 00000 0011223333444333 2467799999998773 22222222222 2345666666
Q ss_pred eCC-chhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000280 299 SRN-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1728)
Q Consensus 299 tR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1728)
|.+ ..+..........+.+.+++.+++.+.+.+. |. . +..+..++..++|.|+....+
T Consensus 150 ~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~--~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 150 SAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV--S----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-CC--C----hHHHHHHHHHcCCCHHHHHHH
Confidence 654 3444323334567899999999998888753 21 1 223667899999999865443
No 188
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.033 Score=64.89 Aligned_cols=162 Identities=13% Similarity=0.168 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCC-ceEEEEEcCCcchHHHHHHHHHHHHHhc-------------------cCCCeeEEEEEC---CCC
Q 000280 163 KIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIED-------------------KLFDKVVFVEVT---QTP 219 (1728)
Q Consensus 163 ~~~~~l~~~L~~~~-~~~i~I~G~gG~GKTtLa~~~~~~~~~~-------------------~~f~~~~wv~~~---~~~ 219 (1728)
...+.+.+.+..+. .+.+.++|+.|+||+++|+.+++..--. .|.| ..|+.-. +..
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I 88 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKSI 88 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCcC
Confidence 34556666666544 4678899999999999999998866321 1222 1222111 011
Q ss_pred CHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCe
Q 000280 220 DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRC 293 (1728)
Q Consensus 220 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~ 293 (1728)
.+ +.++.+.+.+. .+++-++|+|+++... ..+.+...+.+ -..++
T Consensus 89 ~v----------------------dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t 139 (319)
T PRK06090 89 TV----------------------EQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-------PAPNC 139 (319)
T ss_pred CH----------------------HHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-------CCCCe
Confidence 11 22223333332 2466789999998773 23333333332 23456
Q ss_pred EEEEEeCC-chhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000280 294 TVLLTSRN-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1728)
Q Consensus 294 ~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1728)
.+|++|.+ ..+..........+.+.+++.+++.+.+.+. |. . .+..+++.++|.|+....+
T Consensus 140 ~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~-~~--~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 140 LFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ-GI--T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHc-CC--c------hHHHHHHHcCCCHHHHHHH
Confidence 66665554 4444433444568999999999999888653 21 1 1356789999999866544
No 189
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.91 E-value=0.044 Score=59.57 Aligned_cols=193 Identities=20% Similarity=0.205 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEEC-CCCCHHHHHHHHHHHhhhhhccCC
Q 000280 162 MKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVT-QTPDLQTIQNKLSSDLELEFKQNE 240 (1728)
Q Consensus 162 ~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~ 240 (1728)
.+.+..+...+.+ +.+++.|+|.-|+|||.++++....... +.++-|.+. ...+...+...|+..+..+. ..
T Consensus 37 ~e~l~~l~~~i~d-~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~ 109 (269)
T COG3267 37 NEALLMLHAAIAD-GQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQP--KV 109 (269)
T ss_pred hHHHHHHHHHHhc-CCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCc--cc
Confidence 3444455544444 4579999999999999999955544421 222223333 34467778888888887632 22
Q ss_pred CH----HHHHHHHHHHHHcCCc-EEEEEeCCCCc--cccccccCCCcccccccCCCCCCeEEEEEeCCc--------hhh
Q 000280 241 NV----FQRAEKLRQRLKNVKR-VLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR--------DVL 305 (1728)
Q Consensus 241 ~~----~~~~~~l~~~l~~~~~-~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~--------~v~ 305 (1728)
.. +.....+....++++| ..+++|+..+. ...+.++..... ... ...--+|+..-..+ ...
T Consensus 110 ~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl-~~~---~~~~l~ivL~Gqp~L~~~lr~~~l~ 185 (269)
T COG3267 110 NVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNL-EED---SSKLLSIVLIGQPKLRPRLRLPVLR 185 (269)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhh-ccc---ccCceeeeecCCcccchhhchHHHH
Confidence 32 2333455555666788 99999998765 222222211110 000 11112233322211 111
Q ss_pred cccCCCccEEEccCCCHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHhCCChHHHHHHHH
Q 000280 306 CNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKA--SDFRVIADEIVRRCGGLPVAIKTIAN 365 (1728)
Q Consensus 306 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~--~~~~~~~~~i~~~c~glPLai~~~a~ 365 (1728)
...-.....|.+.|++.++...+++.+.+....+ --.++....|.....|.|.+|..++.
T Consensus 186 e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 186 ELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 1011112238999999999998888776422211 12245677899999999999988874
No 190
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.022 Score=66.56 Aligned_cols=175 Identities=12% Similarity=0.150 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCC-ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCe--------eEEEEECCCCCHHHHHHHHHHHhhh
Q 000280 164 IFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK--------VVFVEVTQTPDLQTIQNKLSSDLEL 234 (1728)
Q Consensus 164 ~~~~l~~~L~~~~-~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~--------~~wv~~~~~~~~~~~~~~i~~~l~~ 234 (1728)
....+.+.+..+. .+...++|+.|+||+++|+.+++..--...... +-++..+.-+|+..+..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-------- 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP-------- 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc--------
Confidence 4455677776554 467779999999999999999987732211100 00011111111110000
Q ss_pred hhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEEEeCCc-hhhcc
Q 000280 235 EFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCN 307 (1728)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~-~v~~~ 307 (1728)
.+...-..+.++.+.+.+. .+++-++|+|+++... ..+.+...+.+ -..++.+|++|.+. .+...
T Consensus 82 -~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-------Pp~~~~fiL~t~~~~~llpT 153 (325)
T PRK06871 82 -IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-------PRPNTYFLLQADLSAALLPT 153 (325)
T ss_pred -ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-------CCCCeEEEEEECChHhCchH
Confidence 0000011223333333432 3567789999998873 23333322322 23455666666554 44432
Q ss_pred cCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHH
Q 000280 308 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1728)
Q Consensus 308 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1728)
.......+.+.++++++..+.+....+.. ...+...++.++|.|..+
T Consensus 154 I~SRC~~~~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 154 IYSRCQTWLIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 23335689999999999998888764321 123556788999999633
No 191
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.00016 Score=78.27 Aligned_cols=78 Identities=29% Similarity=0.441 Sum_probs=41.9
Q ss_pred CCcccEEEecCccCCCc----cccccccCCceeecCCCCC----CccchHhhccccccEEeccCccccc--ccCcccccc
Q 000280 582 LISLRTLSLEGCQVGDV----AIVGQLKKLEILSFRNSDI----QQLPREIGQLVQLRLLDLRNCRRLQ--AIAPNVISK 651 (1728)
Q Consensus 582 L~~Lr~L~L~~~~i~~~----~~i~~L~~L~~L~Ls~~~i----~~LP~~i~~L~~L~~L~L~~~~~l~--~lp~~~i~~ 651 (1728)
.++++.|||.+|.|++- ....+|++|++|+|+.|.+ ..+| ..+.+|++|-|.|.. +. .... .+..
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~-L~w~~~~s-~l~~ 144 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG-LSWTQSTS-SLDD 144 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC-CChhhhhh-hhhc
Confidence 45666667777766642 2234566677777766643 3333 345566666666652 21 1111 1455
Q ss_pred CcccceeccCCCc
Q 000280 652 LSRLEELYMGDSF 664 (1728)
Q Consensus 652 L~~L~~L~l~~~~ 664 (1728)
++.+++|+++.|.
T Consensus 145 lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 145 LPKVTELHMSDNS 157 (418)
T ss_pred chhhhhhhhccch
Confidence 6666666666553
No 192
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.84 E-value=0.00016 Score=69.33 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=61.5
Q ss_pred CcceEEEecCcCccccCc---cccCCCcccEEEecCccCCC-ccccc-cccCCceeecCCCCCCccchHhhccccccEEe
Q 000280 560 NELRVVHFTRTCFLSLPS---SLVCLISLRTLSLEGCQVGD-VAIVG-QLKKLEILSFRNSDIQQLPREIGQLVQLRLLD 634 (1728)
Q Consensus 560 ~~Lr~L~Ls~~~i~~lp~---~i~~L~~Lr~L~L~~~~i~~-~~~i~-~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~ 634 (1728)
+.+..+||+.+.+-.+++ .+...++|...+|++|.+.+ |+.|. +..-..+|+|++|.|..+|.++..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 445667777776554443 35556666666777776664 43333 33456667777777777777677777777777
Q ss_pred ccCcccccccCccccccCcccceeccCCC
Q 000280 635 LRNCRRLQAIAPNVISKLSRLEELYMGDS 663 (1728)
Q Consensus 635 L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 663 (1728)
++.| .+...|.- |..|.+|-.|+..++
T Consensus 107 l~~N-~l~~~p~v-i~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 107 LRFN-PLNAEPRV-IAPLIKLDMLDSPEN 133 (177)
T ss_pred cccC-ccccchHH-HHHHHhHHHhcCCCC
Confidence 7666 35555543 555666666655443
No 193
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.83 E-value=0.0028 Score=65.61 Aligned_cols=90 Identities=22% Similarity=0.165 Sum_probs=53.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCC
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (1728)
..+.|+|++|+||||+|+.+++..... ...+++++.+........... ....... ............+.......+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLL-LIIVGGK-KASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHH-hhhhhcc-CCCCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999987432 134666665544332222111 1111111 112233344445555555334
Q ss_pred cEEEEEeCCCCccc
Q 000280 258 RVLVILDNIWKLLN 271 (1728)
Q Consensus 258 ~~LlVlDdv~~~~~ 271 (1728)
..+|++|+++....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 49999999988744
No 194
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.028 Score=66.40 Aligned_cols=152 Identities=18% Similarity=0.288 Sum_probs=91.5
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH-
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK- 254 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 254 (1728)
....+.+.|++|+|||+||.+++..- .|..+--++..+ +. .-++......+.+.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~------mi-------------G~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPED------MI-------------GLSESAKCAHIKKIFED 593 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHH------cc-------------CccHHHHHHHHHHHHHH
Confidence 45678899999999999999999864 476554442211 10 1122233333333332
Q ss_pred --cCCcEEEEEeCCCCccccccccCCCcccccc--------cCCCCCCeEEEEEeCCchhhcccCCC----ccEEEccCC
Q 000280 255 --NVKRVLVILDNIWKLLNLDAVGIPFGDVKKE--------RNDDRSRCTVLLTSRNRDVLCNDMNS----QKFFLIEVL 320 (1728)
Q Consensus 255 --~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~--------~~~~~~g~~ilvTtR~~~v~~~~~~~----~~~~~l~~L 320 (1728)
+..=-.||+||++...+|-.++.-+.+.+-. ..+.++.--|+-||....+.. .|+- ...+.++.+
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNL 672 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCcc
Confidence 2456789999999999999998776652221 222333333455776677766 3443 467889988
Q ss_pred CH-HHHHHHHHHHhCCCCCCCchHHHHHHHHHHh
Q 000280 321 SY-EEAWCLFEKIVGDSAKASDFRVIADEIVRRC 353 (1728)
Q Consensus 321 ~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c 353 (1728)
+. ++..+.+...- .....+.+.++.+.+.+|
T Consensus 673 ~~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 673 TTGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred CchHHHHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 87 66666665532 122334445555555555
No 195
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.79 E-value=0.034 Score=68.47 Aligned_cols=199 Identities=17% Similarity=0.162 Sum_probs=122.5
Q ss_pred ccccchHHHHHHHHHHHh----c-CCceEEEEEcCCcchHHHHHHHHHHHHHh---ccCCCe--eEEEEECCCCCHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLK----D-TNVGMIGVYGVNGVGKTTLVKQIAMQVIE---DKLFDK--VVFVEVTQTPDLQTIQ 225 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~----~-~~~~~i~I~G~gG~GKTtLa~~~~~~~~~---~~~f~~--~~wv~~~~~~~~~~~~ 225 (1728)
....+|+.+..+|-+.+. + ..-..+-|.|.+|+|||..+..|.+..+. ++.-.. .+.|+.-.-..+.+++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 446789999999988886 3 33458999999999999999999996642 222222 3445555566799999
Q ss_pred HHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc-----ccccccCCCcccccccCCCCCCeEEE
Q 000280 226 NKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL-----NLDAVGIPFGDVKKERNDDRSRCTVL 296 (1728)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~~~~~g~~il 296 (1728)
..|...+..... ........+..++. ..+.+++++|+++..- .+..| ..+| ..+++|++
T Consensus 476 ~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~-fdWp--------t~~~sKLv 543 (767)
T KOG1514|consen 476 EKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI-FDWP--------TLKNSKLV 543 (767)
T ss_pred HHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH-hcCC--------cCCCCceE
Confidence 999999876433 23344455666664 2477899999986652 12222 1233 46778877
Q ss_pred EEeCCc--hhhccc-------CCCccEEEccCCCHHHHHHHHHHHhCC--CCCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 000280 297 LTSRNR--DVLCND-------MNSQKFFLIEVLSYEEAWCLFEKIVGD--SAKASDFRVIADEIVRRCGGLPVAIKTIAN 365 (1728)
Q Consensus 297 vTtR~~--~v~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~i~~~c~glPLai~~~a~ 365 (1728)
|.+=.. +..... .-....+..++.+.++-.+....+... .......+-+|+.|+...|..-.|+.+.-+
T Consensus 544 vi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 544 VIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred EEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 654221 111000 011346778888888888877776642 233344444555555555555555555444
Q ss_pred H
Q 000280 366 A 366 (1728)
Q Consensus 366 ~ 366 (1728)
+
T Consensus 624 A 624 (767)
T KOG1514|consen 624 A 624 (767)
T ss_pred H
Confidence 4
No 196
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.77 E-value=0.0078 Score=70.40 Aligned_cols=103 Identities=16% Similarity=0.219 Sum_probs=68.6
Q ss_pred HHHHHHHhc-CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCe-eEEEEECCCC-CHHHHHHHHHHHhhhhhccCCCH
Q 000280 166 QNIMEVLKD-TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK-VVFVEVTQTP-DLQTIQNKLSSDLELEFKQNENV 242 (1728)
Q Consensus 166 ~~l~~~L~~-~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~ 242 (1728)
..+++.+.- ..-..+.|+|..|+|||||++++++.... ++.+. ++|+.+.+.. ++.++.+.+...+.....+....
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 346677662 22346799999999999999999998753 24455 4777777665 68889988888777654322211
Q ss_pred H-----HHHHHHHHHH-HcCCcEEEEEeCCCCc
Q 000280 243 F-----QRAEKLRQRL-KNVKRVLVILDNIWKL 269 (1728)
Q Consensus 243 ~-----~~~~~l~~~l-~~~~~~LlVlDdv~~~ 269 (1728)
. ..+..+.+++ .++++++||+|++...
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1 1222333333 3579999999998654
No 197
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.74 E-value=0.0071 Score=63.66 Aligned_cols=136 Identities=16% Similarity=0.198 Sum_probs=75.4
Q ss_pred chHHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhccC------------------CCeeEEEEECCC--
Q 000280 160 SRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKL------------------FDKVVFVEVTQT-- 218 (1728)
Q Consensus 160 gR~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~~------------------f~~~~wv~~~~~-- 218 (1728)
|-++..+.|.+.+..+.. ..+.++|..|+||+++|..+++..--... ..-+.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 556777788888876655 46899999999999999999987632221 222334432221
Q ss_pred -CCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccCCCcccccccCCCCCCeEE
Q 000280 219 -PDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTV 295 (1728)
Q Consensus 219 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~g~~i 295 (1728)
..++++. ++...+..... .+++=++|+||++.. .....+...+.+ -..++++
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~-----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEe-------pp~~~~f 135 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS-----------------EGKYKVIIIDEADKLTEEAQNALLKTLEE-------PPENTYF 135 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T-----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHS-------TTTTEEE
T ss_pred hhhHHHHH-HHHHHHHHHHh-----------------cCCceEEEeehHhhhhHHHHHHHHHHhcC-------CCCCEEE
Confidence 2233322 33333222211 246779999999986 334444433333 3467888
Q ss_pred EEEeCCch-hhcccCCCccEEEccCC
Q 000280 296 LLTSRNRD-VLCNDMNSQKFFLIEVL 320 (1728)
Q Consensus 296 lvTtR~~~-v~~~~~~~~~~~~l~~L 320 (1728)
|++|++.. +..........+.+.++
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEEECChHHChHHHHhhceEEecCCC
Confidence 88887764 33222333456666655
No 198
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.73 E-value=0.1 Score=69.79 Aligned_cols=46 Identities=30% Similarity=0.350 Sum_probs=37.5
Q ss_pred cccchHHHHHHHHHHHh------cCCceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 157 QFDSRMKIFQNIMEVLK------DTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 157 ~~~gR~~~~~~l~~~L~------~~~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
.++|.++..+.|.+++. ....+++.++|++|+|||++|+.+++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 46788888888888764 12345799999999999999999999873
No 199
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.70 E-value=0.0035 Score=65.78 Aligned_cols=100 Identities=17% Similarity=0.297 Sum_probs=65.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHH--H
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLS--S 230 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~--~ 230 (1728)
....++||-++.++.+.-.-.+++.+.+.|.||+|+||||-+..+++..--...-+++.-.++|+...+.-+...|- .
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FA 103 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFA 103 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHH
Confidence 34567899999998887777788899999999999999999999998874332334555555554433322221111 1
Q ss_pred HhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 231 DLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
|-.. .+-.++.-++|||.+++.
T Consensus 104 Q~kv-----------------~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 104 QKKV-----------------TLPPGRHKIIILDEADSM 125 (333)
T ss_pred Hhhc-----------------cCCCCceeEEEeeccchh
Confidence 1000 111256678999999887
No 200
>PRK12377 putative replication protein; Provisional
Probab=96.68 E-value=0.0039 Score=69.99 Aligned_cols=76 Identities=25% Similarity=0.298 Sum_probs=48.6
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHc
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1728)
+...+.++|..|+|||.||.++++..... ...++++++. ++...+-..... .... ..+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~----~~~~----~~~l~~l~- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDN----GQSG----EKFLQELC- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhc----cchH----HHHHHHhc-
Confidence 34689999999999999999999998633 3446676543 344444333211 1111 23444453
Q ss_pred CCcEEEEEeCCCCc
Q 000280 256 VKRVLVILDNIWKL 269 (1728)
Q Consensus 256 ~~~~LlVlDdv~~~ 269 (1728)
+--||||||+...
T Consensus 163 -~~dLLiIDDlg~~ 175 (248)
T PRK12377 163 -KVDLLVLDEIGIQ 175 (248)
T ss_pred -CCCEEEEcCCCCC
Confidence 6779999999543
No 201
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.68 E-value=0.017 Score=77.05 Aligned_cols=174 Identities=15% Similarity=0.185 Sum_probs=98.7
Q ss_pred ccccchHHHHHHHHHHHh-------------cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHH
Q 000280 156 EQFDSRMKIFQNIMEVLK-------------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ 222 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~-------------~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (1728)
..+.|.+...++|.+.+. -...+-|.++|++|+|||++|+++++... ..| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh----H
Confidence 446787777777766653 02345689999999999999999999863 122 22222 1
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc--------------cccccCCCcccccccCC
Q 000280 223 TIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN--------------LDAVGIPFGDVKKERND 288 (1728)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--------------~~~l~~~~~~~~~~~~~ 288 (1728)
+ ++... ....+..+..+.+......+.+|+||+++.... ...+...+.. . .
T Consensus 522 ~----l~~~~------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg----~-~ 586 (733)
T TIGR01243 522 E----ILSKW------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDG----I-Q 586 (733)
T ss_pred H----Hhhcc------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhc----c-c
Confidence 1 11111 111223445555555556789999999975411 0111111110 0 0
Q ss_pred CCCCeEEEEEeCCchhhcc-cC---CCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000280 289 DRSRCTVLLTSRNRDVLCN-DM---NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 357 (1728)
Q Consensus 289 ~~~g~~ilvTtR~~~v~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 357 (1728)
...+..||.||...+.... .. ..+..+.++..+.++-.++|+.+.......++. -...+++.+.|.-
T Consensus 587 ~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 587 ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred CCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 2234456666655443321 11 235688899999999999998776432221111 1456778887765
No 202
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.018 Score=69.21 Aligned_cols=154 Identities=18% Similarity=0.282 Sum_probs=91.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1728)
..-|.+||++|+|||-||++|++..... |++|..+ +++....+ ..+..+..++++-+..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP--------ELlNkYVG------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP--------ELLNKYVG------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH--------HHHHHHhh------hHHHHHHHHHHHhhcC
Confidence 5678899999999999999999988432 5555543 12222111 1223455677777777
Q ss_pred CcEEEEEeCCCCcc-------c------cccccCCCcccccccCCCCCCeEEEEEeCCchhhcc---cCC-CccEEEccC
Q 000280 257 KRVLVILDNIWKLL-------N------LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN---DMN-SQKFFLIEV 319 (1728)
Q Consensus 257 ~~~LlVlDdv~~~~-------~------~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~---~~~-~~~~~~l~~ 319 (1728)
.+++|.||.++... . ++.+...+.. +....|.-||-.|-.+++... ..| -++..-++.
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDG-----l~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~l 678 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDG-----LEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGL 678 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcc-----cccccceEEEeecCCCcccchhhcCCCccCceeeecC
Confidence 99999999997651 1 1222222211 113345556666655544332 122 256778888
Q ss_pred CCHHHHHHHHHHHhCCCC----CCCchHHHHHHHHHHhCCChH
Q 000280 320 LSYEEAWCLFEKIVGDSA----KASDFRVIADEIVRRCGGLPV 358 (1728)
Q Consensus 320 L~~~ea~~Lf~~~~~~~~----~~~~~~~~~~~i~~~c~glPL 358 (1728)
-+.+|-.++++....... ..-+++++|.. .+|.|..-
T Consensus 679 Pn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gftG 719 (802)
T KOG0733|consen 679 PNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFTG 719 (802)
T ss_pred CCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCch
Confidence 899999999999886322 12234443321 35667653
No 203
>PHA00729 NTP-binding motif containing protein
Probab=96.65 E-value=0.0089 Score=65.16 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=29.2
Q ss_pred HHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 167 NIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 167 ~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
.+++.+...+...|.|+|.+|+||||||..++++.
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555666666789999999999999999999976
No 204
>PRK08118 topology modulation protein; Reviewed
Probab=96.64 E-value=0.00099 Score=70.50 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=29.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhc-cCCCeeEE
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIED-KLFDKVVF 212 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~-~~f~~~~w 212 (1728)
+.|.|+|++|+||||+|+++++..... -+||.++|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 368999999999999999999987543 45677776
No 205
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.64 E-value=0.015 Score=77.33 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=62.0
Q ss_pred cccchHHHHHHHHHHHhc-------C--CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHH
Q 000280 157 QFDSRMKIFQNIMEVLKD-------T--NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNK 227 (1728)
Q Consensus 157 ~~~gR~~~~~~l~~~L~~-------~--~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (1728)
.++|.+..++.+.+.+.. + ...++.++|+.|+|||++|+.+++.. +...+.++.++..+...+
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~~--- 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHTV--- 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcccH---
Confidence 467888888888888762 1 23467899999999999999999876 334566665543321111
Q ss_pred HHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 228 LSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
...++.... .... +....+.+.++....-+++||+++..
T Consensus 527 -~~lig~~~g-yvg~-~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 527 -SRLIGAPPG-YVGF-EQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred -HHHhcCCCC-Cccc-chhhHHHHHHHhCCCeEEEEechhhc
Confidence 111221111 1111 11223445555456679999999865
No 206
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.61 E-value=0.062 Score=71.00 Aligned_cols=163 Identities=20% Similarity=0.206 Sum_probs=87.8
Q ss_pred ccccchHHHHHHHHHHHhc------CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLKD------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLS 229 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~------~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (1728)
...+|.++..+.|++++.- .....+.++|++|+||||+|+.++.... ..| +-++.+...+..++...--
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKY---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCE---EEEEcCCCCCHHHhccchh
Confidence 4478999999999988861 2446899999999999999999998763 222 2234444444433322111
Q ss_pred HHhhhhhccCCCHHHHHHHHHHHHHc--CCcEEEEEeCCCCccc-c-----ccccCCCcc-----cccccC--C-CCCCe
Q 000280 230 SDLELEFKQNENVFQRAEKLRQRLKN--VKRVLVILDNIWKLLN-L-----DAVGIPFGD-----VKKERN--D-DRSRC 293 (1728)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~~~-~-----~~l~~~~~~-----~~~~~~--~-~~~g~ 293 (1728)
...+. .. ..+.+.+.. ..+-+++||.++.... . ..+...+.. +.+..+ . .-.+.
T Consensus 397 ~~~g~------~~----G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 397 TYIGS------MP----GKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred ccCCC------CC----cHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 11110 00 122223321 2455789999976521 1 111110100 000000 0 11333
Q ss_pred EEEEEeCCchhhcccCCCccEEEccCCCHHHHHHHHHHHh
Q 000280 294 TVLLTSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1728)
Q Consensus 294 ~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 333 (1728)
-+|.|+....+.....+....+++.+++.+|-.++.+++.
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4455554443333233344678999999999888777655
No 207
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.58 E-value=0.0022 Score=69.11 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEE
Q 000280 161 RMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVE 214 (1728)
Q Consensus 161 R~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~ 214 (1728)
+..+-...+++|. ...++.+.|++|+|||.||.+++.+.-..+.|+.++++.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4445556667776 456999999999999999999998776678899988875
No 208
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.57 E-value=0.0032 Score=65.17 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=53.6
Q ss_pred hcCCCcceEEEecCcCccccCccccC-CCcccEEEecCccCC---CccccccccCCceeecCCCCCCccch----Hhhcc
Q 000280 556 FEGMNELRVVHFTRTCFLSLPSSLVC-LISLRTLSLEGCQVG---DVAIVGQLKKLEILSFRNSDIQQLPR----EIGQL 627 (1728)
Q Consensus 556 f~~l~~Lr~L~Ls~~~i~~lp~~i~~-L~~Lr~L~L~~~~i~---~~~~i~~L~~L~~L~Ls~~~i~~LP~----~i~~L 627 (1728)
|..++.|.+|.|.+|.|..+-..+.. +.+|..|.|.+|.|. ++..+..++.|++|.+-+|.++..+. -+.++
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 45667777777777777766444443 345777777777655 34555666777777777776665443 25677
Q ss_pred ccccEEeccCc
Q 000280 628 VQLRLLDLRNC 638 (1728)
Q Consensus 628 ~~L~~L~L~~~ 638 (1728)
++|++||..+-
T Consensus 140 p~l~~LDF~kV 150 (233)
T KOG1644|consen 140 PSLRTLDFQKV 150 (233)
T ss_pred CcceEeehhhh
Confidence 77888877654
No 209
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.084 Score=64.66 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=50.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHc
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1728)
..+|+|+|.+|+||||++..++.....+.....+..++..... ...+-+......++.......+..+. ....+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L-~~aL~~l~- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESL-LDLLERLR- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHH-HHHHHHhc-
Confidence 4699999999999999999998876543223456666543211 12223333344454443322222222 23333443
Q ss_pred CCcEEEEEeCCC
Q 000280 256 VKRVLVILDNIW 267 (1728)
Q Consensus 256 ~~~~LlVlDdv~ 267 (1728)
..=+||+|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 45588888874
No 210
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.009 Score=73.11 Aligned_cols=190 Identities=13% Similarity=0.153 Sum_probs=112.6
Q ss_pred CccccccchHHHHHHHHHHHhcCC-ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHH
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSD 231 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~-~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 231 (1728)
....+++|.+.....|..++.... .+.....|+-|+||||+|+-+++-..-.. | ...++...=...++|...
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEG 85 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcC
Confidence 345667999999999999998554 45667899999999999999998763221 1 011111111112222222
Q ss_pred -----hhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccCCCcccccccCCCCCCeEEE-EEe
Q 000280 232 -----LELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVL-LTS 299 (1728)
Q Consensus 232 -----l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~g~~il-vTt 299 (1728)
+..+.. .....+.++.+.+... +++.=+.|+|+|+-. ..|+.+..-+-. -....+.| .||
T Consensus 86 ~~~DviEiDaA-Sn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-------PP~hV~FIlATT 157 (515)
T COG2812 86 SLIDVIEIDAA-SNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-------PPSHVKFILATT 157 (515)
T ss_pred Ccccchhhhhh-hccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-------CccCeEEEEecC
Confidence 001111 1112223344444443 346668999999866 445555443332 22234444 455
Q ss_pred CCchhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChH
Q 000280 300 RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV 358 (1728)
Q Consensus 300 R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 358 (1728)
-...+..........|.+..++.++-...+...+....- .-.++...-|++..+|...
T Consensus 158 e~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I-~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 158 EPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI-NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred CcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCC-ccCHHHHHHHHHHcCCChh
Confidence 555555544556778999999999999988888753222 2224556678888877554
No 211
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.48 E-value=0.00068 Score=65.20 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=40.5
Q ss_pred CcCChhHhcCCCcceEEEecCcCccccCccccCCCcccEEEecCccCC-CccccccccCCceeecCCCCCCccch
Q 000280 549 LKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVG-DVAIVGQLKKLEILSFRNSDIQQLPR 622 (1728)
Q Consensus 549 ~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~-~~~~i~~L~~L~~L~Ls~~~i~~LP~ 622 (1728)
.++|+.|-.+++.+..|+|++|.+..+|..+..++.||.|+++.|.+. .|..|..|.+|-+||..+|.+..+|-
T Consensus 66 k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 66 KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 344444444555556666666666666665666666666665555544 24444445555555555555544443
No 212
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.05 Score=64.39 Aligned_cols=165 Identities=11% Similarity=0.079 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcCC-ceEEEEEcCCcchHHHHHHHHHHHHHhc--------------------cCCCeeEEEEECCCCCH
Q 000280 163 KIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVVFVEVTQTPDL 221 (1728)
Q Consensus 163 ~~~~~l~~~L~~~~-~~~i~I~G~gG~GKTtLa~~~~~~~~~~--------------------~~f~~~~wv~~~~~~~~ 221 (1728)
..-+++.+.+..++ .+.+.+.|+.|+||+++|.++++..--. .|.|. .++.-....
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~~-- 85 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKGK-- 85 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEeccccc--
Confidence 34566777776544 5677899999999999999998876321 12221 122110000
Q ss_pred HHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEE
Q 000280 222 QTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTV 295 (1728)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~i 295 (1728)
..-..+.++.+.+.+. .+++-++|+|+++... .-+.+...+.+ -..++.+
T Consensus 86 -----------------~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~f 141 (334)
T PRK07993 86 -----------------SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-------PPENTWF 141 (334)
T ss_pred -----------------ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-------CCCCeEE
Confidence 0001222333333332 3577799999998763 22333222322 2345566
Q ss_pred EEEeCC-chhhcccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHH
Q 000280 296 LLTSRN-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 360 (1728)
Q Consensus 296 lvTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 360 (1728)
|++|.+ ..+..........+.+.+++.+++.+.+....+. + .+.+..+++.++|.|...
T Consensus 142 iL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~-----~-~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 142 FLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVTM-----S-QDALLAALRLSAGAPGAA 201 (334)
T ss_pred EEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccCC-----C-HHHHHHHHHHcCCCHHHH
Confidence 666655 4444322333457899999999998888654321 1 233678899999999644
No 213
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.47 E-value=0.017 Score=62.81 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=57.2
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCHHHHHHHHHHHhhhhhcc---CCCHHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT-PDLQTIQNKLSSDLELEFKQ---NENVFQRAEKLRQR 252 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 252 (1728)
+++|+++|+.|+||||.+.+++.+.+.+ -..+..|+.... ....+-++..++.++.+... ..+..+.+.+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4799999999999999999998888644 455777776532 23455667788888876532 22344444444444
Q ss_pred HHcCCcEEEEEeCCC
Q 000280 253 LKNVKRVLVILDNIW 267 (1728)
Q Consensus 253 l~~~~~~LlVlDdv~ 267 (1728)
...++.=++++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 443334477778653
No 214
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.06 Score=63.52 Aligned_cols=92 Identities=23% Similarity=0.230 Sum_probs=56.6
Q ss_pred CCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEEEe-CCchhhcccCCCccEEEccCCCHHHHHHHHHHH
Q 000280 256 VKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTS-RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKI 332 (1728)
Q Consensus 256 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 332 (1728)
+++-++|+|+++... ..+.+...+.+ -..++.+|++| +...+..........+.+.+++.++..+.+...
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEE-------PPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcC-------CCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 466789999998772 33443333332 23455555544 545554433334568999999999999888764
Q ss_pred hCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000280 333 VGDSAKASDFRVIADEIVRRCGGLPVAIKTI 363 (1728)
Q Consensus 333 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 363 (1728)
|. ++ ...++..++|.|.....+
T Consensus 204 -~~----~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 204 -GV----AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -CC----Ch----HHHHHHHcCCCHHHHHHH
Confidence 21 11 224678889999754433
No 215
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.46 E-value=0.011 Score=79.04 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=61.3
Q ss_pred ccccchHHHHHHHHHHHhc-------C--CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLKD-------T--NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQN 226 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~-------~--~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (1728)
..++|.+..++.+.+++.. + ...++.++|+.|+|||.+|+++++..-.. .+..+-++++...+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhh----
Confidence 4578999999999988851 1 23578899999999999999998876211 1222333333221111
Q ss_pred HHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 227 KLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
.+.+-+|.+.. ..... ....+.+.+++...-+|+||+++..
T Consensus 640 ~~~~l~g~~~g-yvg~~-~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPPG-YVGYG-EGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCCC-ccccc-ccchHHHHHHhCCCcEEEEechhhc
Confidence 11111222111 11111 1123445555567789999999755
No 216
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.45 E-value=0.0094 Score=66.75 Aligned_cols=90 Identities=17% Similarity=0.280 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhc--CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCC
Q 000280 163 KIFQNIMEVLKD--TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNE 240 (1728)
Q Consensus 163 ~~~~~l~~~L~~--~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 240 (1728)
..+..+.++..+ .+...+.++|.+|+|||+||.++++..... -..+++++ ..++...+-.... . . ..
T Consensus 83 ~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~-~-~-~~ 151 (244)
T PRK07952 83 NALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFS-N-S-ET 151 (244)
T ss_pred HHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHh-h-c-cc
Confidence 345555555542 234578999999999999999999988543 34566664 3444444443332 1 0 11
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 241 NVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
. ...+.+.+. +.=+|||||+...
T Consensus 152 ~----~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 152 S----EEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred c----HHHHHHHhc--cCCEEEEeCCCCC
Confidence 1 123444554 4458888999665
No 217
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.42 E-value=0.0036 Score=64.85 Aligned_cols=104 Identities=21% Similarity=0.300 Sum_probs=54.7
Q ss_pred cccEEEecCccCCCccccccccCCceeecCCCCCCccchHhhc-cccccEEeccCcccccccCc-cccccCcccceeccC
Q 000280 584 SLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREIGQ-LVQLRLLDLRNCRRLQAIAP-NVISKLSRLEELYMG 661 (1728)
Q Consensus 584 ~Lr~L~L~~~~i~~~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~-L~~L~~L~L~~~~~l~~lp~-~~i~~L~~L~~L~l~ 661 (1728)
..-.+||++|.+..+..+..+..|.+|.|++|+|..+-..+.. +.+|..|.+.+| .+..+.. +-+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 4455666666666666666666677777766666666544443 345666666665 3433311 003445555555555
Q ss_pred CCccccccccCCCccchhhhcCCCCCCeEEEE
Q 000280 662 DSFSQWEKVEGGSNASLVELKGLSKLTTLEIH 693 (1728)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~ 693 (1728)
+|... +..+...--+..+++|+.|+..
T Consensus 122 ~Npv~-----~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 122 GNPVE-----HKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CCchh-----cccCceeEEEEecCcceEeehh
Confidence 54432 2222223334455555555543
No 218
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.39 E-value=0.056 Score=62.20 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHH
Q 000280 163 KIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQ 225 (1728)
Q Consensus 163 ~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 225 (1728)
+.++.+..++..+ +.|.+.|.+|+|||++|+.+++.. . ...++++.....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l--g---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR--D---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh--C---CCEEEEeCCccCCHHHHh
Confidence 3445555555433 366789999999999999999744 1 234556666655555544
No 219
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.08 Score=67.79 Aligned_cols=102 Identities=20% Similarity=0.289 Sum_probs=63.4
Q ss_pred ccccchHHHHHHHHHHHh-------c--CCceEEEEEcCCcchHHHHHHHHHHHHHhccCC---CeeEEEEECCCCCHHH
Q 000280 156 EQFDSRMKIFQNIMEVLK-------D--TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF---DKVVFVEVTQTPDLQT 223 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~-------~--~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~ 223 (1728)
..++|.+..++.+.+++. + ....+....|+.|||||.||++++... | +..+-++.|+...-.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L-----fg~e~aliR~DMSEy~EkH- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL-----FGDEQALIRIDMSEYMEKH- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh-----cCCCccceeechHHHHHHH-
Confidence 356899999999999987 1 235677789999999999999999877 6 334444444322211
Q ss_pred HHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcE-EEEEeCCCCc
Q 000280 224 IQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRV-LVILDNIWKL 269 (1728)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~-LlVlDdv~~~ 269 (1728)
-...|-+..+.-...++ ...+-+..+ .++| +|.||+|+..
T Consensus 565 ----sVSrLIGaPPGYVGyee-GG~LTEaVR-r~PySViLlDEIEKA 605 (786)
T COG0542 565 ----SVSRLIGAPPGYVGYEE-GGQLTEAVR-RKPYSVILLDEIEKA 605 (786)
T ss_pred ----HHHHHhCCCCCCceecc-ccchhHhhh-cCCCeEEEechhhhc
Confidence 12223222221222222 234555555 3545 8888999765
No 220
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.38 E-value=0.0094 Score=65.76 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=30.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEE
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEV 215 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 215 (1728)
-.++|+|..|+||||++..+.... .+.|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~--~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL--RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh--cccCCEEEEEec
Confidence 478899999999999999999876 456888877754
No 221
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.35 E-value=0.04 Score=61.82 Aligned_cols=171 Identities=17% Similarity=0.201 Sum_probs=105.5
Q ss_pred cccccchHHHHHHHHHHHh----cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCH-HHHHHHHH
Q 000280 155 YEQFDSRMKIFQNIMEVLK----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDL-QTIQNKLS 229 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~----~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~ 229 (1728)
...++|-.++-.++.+++. .++..-|.|+|+.|.|||+|...+..+. +..-+..+-|......-. +-.++.|.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~--q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI--QENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH--HhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3457788888888888876 3456788999999999999999888883 222244555666555433 22455666
Q ss_pred HHhhhhhc----cCCCHHHHHHHHHHHHHcC-----CcEEEEEeCCCCccc------cccccCCCcccccccCCCCCCeE
Q 000280 230 SDLELEFK----QNENVFQRAEKLRQRLKNV-----KRVLVILDNIWKLLN------LDAVGIPFGDVKKERNDDRSRCT 294 (1728)
Q Consensus 230 ~~l~~~~~----~~~~~~~~~~~l~~~l~~~-----~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~~~~~g~~ 294 (1728)
+++..... ...+..+....+...|+.+ .++++|+|.++--.. +..+.. .......+-|.
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfD------isqs~r~Pici 174 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFD------ISQSARAPICI 174 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHH------HHhhcCCCeEE
Confidence 66654332 1234445566677777643 558888888764311 111100 01111456777
Q ss_pred EEEEeCCchhhcc------cCCCccEEEccCCCHHHHHHHHHHHh
Q 000280 295 VLLTSRNRDVLCN------DMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1728)
Q Consensus 295 ilvTtR~~~v~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 333 (1728)
|-+|||-.-...- ......++-++.++-++-..++++..
T Consensus 175 ig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 175 IGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred EEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 8899997633211 22223366677888888888888876
No 222
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0093 Score=70.22 Aligned_cols=89 Identities=21% Similarity=0.247 Sum_probs=59.5
Q ss_pred chHHHHHHHHHHHhcCC---------ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHH
Q 000280 160 SRMKIFQNIMEVLKDTN---------VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1728)
Q Consensus 160 gR~~~~~~l~~~L~~~~---------~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 230 (1728)
--..|+++|+++|.++. ++-|.++|++|.|||-||++++....+- | |...+..+ .+++ .
T Consensus 311 EAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEF--dEm~----V 378 (752)
T KOG0734|consen 311 EAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEF--DEMF----V 378 (752)
T ss_pred HHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccch--hhhh----h
Confidence 34468889999998642 4678999999999999999999987432 2 22222222 2221 1
Q ss_pred HhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 231 DLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
.. -..+++.+++.-+..-+++|.+|.++..
T Consensus 379 Gv---------GArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 379 GV---------GARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred cc---------cHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 11 1234455555556678999999998765
No 223
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.33 E-value=0.04 Score=73.52 Aligned_cols=176 Identities=15% Similarity=0.139 Sum_probs=96.2
Q ss_pred cccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCH
Q 000280 155 YEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDL 221 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~~-------------~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 221 (1728)
..++.|.++.++++.+++.- ...+.|.++|++|+|||++|+.+++... .. .+.++..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~~---~i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--AY---FISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--Ce---EEEEecH-----
Confidence 44578999999888887641 2346788999999999999999998763 11 1223211
Q ss_pred HHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------cccccCCCcccccccCC
Q 000280 222 QTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN-------------LDAVGIPFGDVKKERND 288 (1728)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~~ 288 (1728)
++. ... ..........+.+........+|+||+++.... ...+...+.. .
T Consensus 247 -~i~----~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~----l-- 309 (733)
T TIGR01243 247 -EIM----SKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDG----L-- 309 (733)
T ss_pred -HHh----ccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhc----c--
Confidence 111 110 001122333444444445778999999865411 0111111111 1
Q ss_pred CCCCeEEEE-EeCCch-hhcc--cC-CCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHH
Q 000280 289 DRSRCTVLL-TSRNRD-VLCN--DM-NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 359 (1728)
Q Consensus 289 ~~~g~~ilv-TtR~~~-v~~~--~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 359 (1728)
...+..++| ||.... +... .. .-...+.+...+.++-.++++.+........ ......+++.+.|.--+
T Consensus 310 ~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 310 KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCHH
Confidence 122333444 444332 1110 11 1245778888899998888887664322111 11245788888887643
No 224
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.012 Score=71.77 Aligned_cols=160 Identities=19% Similarity=0.157 Sum_probs=88.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC--CCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT--PDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1728)
...|.|.|..|+|||+||+++++... +++.-.+.+|+++.- ..++.+++.+...+. ..+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfs-----------------e~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFS-----------------EALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHH-----------------HHHh
Confidence 45789999999999999999999986 555666777776643 234444443332221 1222
Q ss_pred cCCcEEEEEeCCCCcc--------ccc----cccCCCcccccccCCCCCCeEEEEEeCCchhhcc----cCCCccEEEcc
Q 000280 255 NVKRVLVILDNIWKLL--------NLD----AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN----DMNSQKFFLIE 318 (1728)
Q Consensus 255 ~~~~~LlVlDdv~~~~--------~~~----~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~----~~~~~~~~~l~ 318 (1728)
-.+-+|||||++-.. +|. .+...+.++.+.....+..-++|.|.....-... ..-.+.+..+.
T Consensus 493 -~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 493 -YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred -hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 478899999986541 121 1111111111111112222244555444332221 12235677899
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCC
Q 000280 319 VLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGL 356 (1728)
Q Consensus 319 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 356 (1728)
.+...+-.++++........ ....+..+-++.+|+|.
T Consensus 572 ap~~~~R~~IL~~~~s~~~~-~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLS-DITMDDLDFLSVKTEGY 608 (952)
T ss_pred CcchhHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCc
Confidence 99988888877766642221 11122233478888774
No 225
>PRK08181 transposase; Validated
Probab=96.29 E-value=0.0057 Score=69.56 Aligned_cols=79 Identities=25% Similarity=0.335 Sum_probs=48.9
Q ss_pred HHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHH
Q 000280 170 EVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKL 249 (1728)
Q Consensus 170 ~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 249 (1728)
+|+.. ...+.++|++|+|||.||..+++..... ...++|++ ..++...+.... . .... ..+
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~----~-~~~~----~~~ 161 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVAR----R-ELQL----ESA 161 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHH----h-CCcH----HHH
Confidence 45542 3569999999999999999999987532 33456664 344544443321 1 1111 223
Q ss_pred HHHHHcCCcEEEEEeCCCCc
Q 000280 250 RQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 250 ~~~l~~~~~~LlVlDdv~~~ 269 (1728)
.+.+. +-=||||||+...
T Consensus 162 l~~l~--~~dLLIIDDlg~~ 179 (269)
T PRK08181 162 IAKLD--KFDLLILDDLAYV 179 (269)
T ss_pred HHHHh--cCCEEEEeccccc
Confidence 44443 4569999999654
No 226
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.25 E-value=0.015 Score=64.63 Aligned_cols=88 Identities=18% Similarity=0.239 Sum_probs=55.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHh-hh---h--hccCCCHH---HHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDL-EL---E--FKQNENVF---QRAE 247 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-~~---~--~~~~~~~~---~~~~ 247 (1728)
-.++.|+|.+|+|||++|.+++..... .-..++|++... ++..++.+ ++... .. + ..+..+.. ....
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~--~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR--QGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 469999999999999999999887742 356799999876 55555443 33322 10 0 00111222 2344
Q ss_pred HHHHHHHcCCcEEEEEeCCCC
Q 000280 248 KLRQRLKNVKRVLVILDNIWK 268 (1728)
Q Consensus 248 ~l~~~l~~~~~~LlVlDdv~~ 268 (1728)
.+.+.+.+.+.-+||+|.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHH
Confidence 555555544566899999754
No 227
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.14 E-value=0.017 Score=65.67 Aligned_cols=91 Identities=24% Similarity=0.305 Sum_probs=57.5
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccC----CCeeEEEEECCCCCHHHHHHHHHHHhhhhhc---------cCCCH-
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKL----FDKVVFVEVTQTPDLQTIQNKLSSDLELEFK---------QNENV- 242 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~- 242 (1728)
-.++.|+|.+|+|||++|.+++........ -..++|++....++..++. ++++..+.... ...+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCHH
Confidence 468999999999999999999865432221 3679999988876655443 34444332211 01122
Q ss_pred --HHHHHHHHHHHHcC-CcEEEEEeCCCC
Q 000280 243 --FQRAEKLRQRLKNV-KRVLVILDNIWK 268 (1728)
Q Consensus 243 --~~~~~~l~~~l~~~-~~~LlVlDdv~~ 268 (1728)
.+....+.+.+.+. +.-+||+|.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 22334455555555 777999998864
No 228
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.13 E-value=0.017 Score=66.99 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=58.9
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhc-----cCCCHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFK-----QNENVFQRAEKLRQ 251 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 251 (1728)
-+++-|+|++|+||||||.+++..... .-..++||+..+.++.. .+++++.+.+ +....++....+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~--~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 369999999999999999998887753 24567899887766653 3555554322 13344455555555
Q ss_pred HHHcCCcEEEEEeCCCCc
Q 000280 252 RLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 252 ~l~~~~~~LlVlDdv~~~ 269 (1728)
.++++.--++|+|.|...
T Consensus 128 li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HhhccCCcEEEEcchhhh
Confidence 555556779999998643
No 229
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.89 Score=54.03 Aligned_cols=175 Identities=17% Similarity=0.192 Sum_probs=96.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH-cC
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK-NV 256 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~ 256 (1728)
|--.++|++|.|||+++.++|+... ||... ..++...+-. .+++.|. ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~n~-------------------------dLr~LL~~t~ 285 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKLDS-------------------------DLRHLLLATP 285 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccCcH-------------------------HHHHHHHhCC
Confidence 4567999999999999999999873 55432 1121111111 1233332 23
Q ss_pred CcEEEEEeCCCCccccccccCC-------------Cc---ccccccCCCCCCeEE-EEEeCCchhhcc---cCC-CccEE
Q 000280 257 KRVLVILDNIWKLLNLDAVGIP-------------FG---DVKKERNDDRSRCTV-LLTSRNRDVLCN---DMN-SQKFF 315 (1728)
Q Consensus 257 ~~~LlVlDdv~~~~~~~~l~~~-------------~~---~~~~~~~~~~~g~~i-lvTtR~~~v~~~---~~~-~~~~~ 315 (1728)
.+-+||+.||+-..+...-... +. +..+.+-....+=|| |+||-..+-... ..| -+..+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 7778888888765222110000 00 011111111112355 557766543322 122 24578
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHH-HhcCCchh--HHHHHHHHhccc
Q 000280 316 LIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANA-LKNKRLYV--WNDSLERLRNST 386 (1728)
Q Consensus 316 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~~-L~~~~~~~--w~~~~~~l~~~~ 386 (1728)
.++--+.+.-..|+.++.|...+ ..++.+|.+...|.-+.=+.+|.. |+++.+.. .+.+.+.++...
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~ 435 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEED----HRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKK 435 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCCC----cchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence 89999999999999999875332 234566666666766655666654 56653222 566666555443
No 230
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.15 Score=54.28 Aligned_cols=152 Identities=15% Similarity=0.174 Sum_probs=87.0
Q ss_pred ccccchHHHHHHHHHHHh-------------cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHH
Q 000280 156 EQFDSRMKIFQNIMEVLK-------------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ 222 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~-------------~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (1728)
+.+-|-++.+.+|.+.+. -..++-+.++|++|.|||-||++||++- .+.|+.|+...
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgse--- 216 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE--- 216 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechHH---
Confidence 334566777777776654 1356788999999999999999999865 34567777631
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcccc----------------ccccCCCccccccc
Q 000280 223 TIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNL----------------DAVGIPFGDVKKER 286 (1728)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~----------------~~l~~~~~~~~~~~ 286 (1728)
-+++-|.+. ...+.+++---++..+-+|..|.+++...- -++...+..+
T Consensus 217 lvqk~igeg-----------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf---- 281 (404)
T KOG0728|consen 217 LVQKYIGEG-----------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF---- 281 (404)
T ss_pred HHHHHhhhh-----------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc----
Confidence 111111111 122233333333457778888988765110 0011111110
Q ss_pred CCCCCCeEEEEEeCCchhhcc---cCC-CccEEEccCCCHHHHHHHHHHHh
Q 000280 287 NDDRSRCTVLLTSRNRDVLCN---DMN-SQKFFLIEVLSYEEAWCLFEKIV 333 (1728)
Q Consensus 287 ~~~~~g~~ilvTtR~~~v~~~---~~~-~~~~~~l~~L~~~ea~~Lf~~~~ 333 (1728)
...++-|||..|..-++... ..+ .++.++.++-+++.-.++++-+.
T Consensus 282 -eatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 282 -EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred -ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 13567788887755544432 122 25677888887777777776555
No 231
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.03 E-value=0.019 Score=66.63 Aligned_cols=86 Identities=22% Similarity=0.296 Sum_probs=58.7
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhc-----cCCCHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFK-----QNENVFQRAEKLRQ 251 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 251 (1728)
-+++-|+|++|+||||||.+++..... .-..++||+..+.++.. .+.+++.+.+ +..+.++....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 468889999999999999998887743 34568899987776653 3445554322 13344445555555
Q ss_pred HHHcCCcEEEEEeCCCCc
Q 000280 252 RLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 252 ~l~~~~~~LlVlDdv~~~ 269 (1728)
.++++.--++|+|.|-..
T Consensus 128 li~s~~~~lIVIDSvaal 145 (325)
T cd00983 128 LVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHhccCCCEEEEcchHhh
Confidence 455556779999997643
No 232
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.03 E-value=0.022 Score=64.50 Aligned_cols=137 Identities=20% Similarity=0.305 Sum_probs=80.5
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHH-HhccCCCeeEE----EEECCCC---------CH
Q 000280 156 EQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV-IEDKLFDKVVF----VEVTQTP---------DL 221 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~-~~~~~f~~~~w----v~~~~~~---------~~ 221 (1728)
-++-+|..+-.--+++|.++.+..|.+.|.+|.|||.||.+++-.. -+++.|+.++- +.+++.. .+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm 303 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKM 303 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhc
Confidence 3456788888888899999999999999999999999998876543 34566766542 2233322 12
Q ss_pred HHHHHHHHHHhhhhhccCCCHHHHHHHHH--HHHH-------cC---CcEEEEEeCCCCcc--ccccccCCCcccccccC
Q 000280 222 QTIQNKLSSDLELEFKQNENVFQRAEKLR--QRLK-------NV---KRVLVILDNIWKLL--NLDAVGIPFGDVKKERN 287 (1728)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~--~~l~-------~~---~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~ 287 (1728)
.-..+.|.+-+..-....+......+.+. ..++ ++ .+-++|+|.+.+.. +...+ +..
T Consensus 304 ~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR------ 374 (436)
T COG1875 304 GPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTR------ 374 (436)
T ss_pred cchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHh------
Confidence 22333444433321111111111122221 1111 12 55789999998863 33333 333
Q ss_pred CCCCCeEEEEEeCCc
Q 000280 288 DDRSRCTVLLTSRNR 302 (1728)
Q Consensus 288 ~~~~g~~ilvTtR~~ 302 (1728)
.+.|+||+.|---.
T Consensus 375 -~G~GsKIVl~gd~a 388 (436)
T COG1875 375 -AGEGSKIVLTGDPA 388 (436)
T ss_pred -ccCCCEEEEcCCHH
Confidence 78899999887544
No 233
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.03 E-value=0.0025 Score=71.52 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=41.7
Q ss_pred CCCeEEEEEeccCC--CCCcCChhHhcCCCcceEEEecCcCccc-----cCccccCCCcccEEEecCccCCC-----c-c
Q 000280 533 CPKLSLFLLFAKYD--SSLKIPDLFFEGMNELRVVHFTRTCFLS-----LPSSLVCLISLRTLSLEGCQVGD-----V-A 599 (1728)
Q Consensus 533 ~~~Lr~L~l~~~~~--~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~-----lp~~i~~L~~Lr~L~L~~~~i~~-----~-~ 599 (1728)
-++||+++...|.- .........|...+.|+.+.++.|.|.. +-..+..++||++|||..|.++. + .
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 35666666666621 1111222345555666666666655431 23345555566666666555442 1 3
Q ss_pred ccccccCCceeecCCCCC
Q 000280 600 IVGQLKKLEILSFRNSDI 617 (1728)
Q Consensus 600 ~i~~L~~L~~L~Ls~~~i 617 (1728)
.+..+++|+.|++++|.+
T Consensus 236 aL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLL 253 (382)
T ss_pred Hhcccchheeeccccccc
Confidence 344444555555555544
No 234
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.02 E-value=0.0063 Score=65.05 Aligned_cols=74 Identities=30% Similarity=0.368 Sum_probs=45.7
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1728)
..-+.++|..|+|||.||.++++....+ -..+.|++ ..+++..+- .... .... ..+.+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~------~~~L~~~l~----~~~~-~~~~----~~~~~~l~-- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFIT------ASDLLDELK----QSRS-DGSY----EELLKRLK-- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEE------HHHHHHHHH----CCHC-CTTH----CHHHHHHH--
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEee------cCceecccc----cccc-ccch----hhhcCccc--
Confidence 4679999999999999999999988642 23456664 344444433 2221 1121 23445565
Q ss_pred CcEEEEEeCCCCc
Q 000280 257 KRVLVILDNIWKL 269 (1728)
Q Consensus 257 ~~~LlVlDdv~~~ 269 (1728)
+-=||||||+...
T Consensus 108 ~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 RVDLLILDDLGYE 120 (178)
T ss_dssp TSSCEEEETCTSS
T ss_pred cccEeccccccee
Confidence 4568889998765
No 235
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.00 E-value=0.17 Score=61.93 Aligned_cols=88 Identities=20% Similarity=0.264 Sum_probs=52.9
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCHHHHHHHHHHHhhhhhccC---CCHHHHHHHHHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT-PDLQTIQNKLSSDLELEFKQN---ENVFQRAEKLRQ 251 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 251 (1728)
...+|.++|.+|+||||.|..++...+.. .+ .++.|+.... +...+-+..++.+++.+.... .+....+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 35799999999999999999999888643 22 4445544321 123444556677766543321 233333333444
Q ss_pred HHHcCCcEEEEEeCCC
Q 000280 252 RLKNVKRVLVILDNIW 267 (1728)
Q Consensus 252 ~l~~~~~~LlVlDdv~ 267 (1728)
+.. +. -++|+|..-
T Consensus 172 ~~~-~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFK-KA-DVIIVDTAG 185 (437)
T ss_pred Hhh-cC-CEEEEECCC
Confidence 443 23 568888864
No 236
>PRK09354 recA recombinase A; Provisional
Probab=95.98 E-value=0.024 Score=66.40 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=60.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhc-----cCCCHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFK-----QNENVFQRAEKLRQ 251 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 251 (1728)
-+++-|+|++|+||||||.+++..... .-..++||+....++.. .+++++.+.+ +....++....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~--~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 468889999999999999999887753 34668999988877753 4555554322 13344455555555
Q ss_pred HHHcCCcEEEEEeCCCCc
Q 000280 252 RLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 252 ~l~~~~~~LlVlDdv~~~ 269 (1728)
.++++.--+||+|.|-..
T Consensus 133 li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HhhcCCCCEEEEeChhhh
Confidence 555567779999998644
No 237
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.98 E-value=0.046 Score=73.81 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=62.8
Q ss_pred ccccchHHHHHHHHHHHhcC---------CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLKDT---------NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQN 226 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~~---------~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (1728)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.++..... .-...+.++++...+...+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~--~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD--DEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC--CCCcEEEEechhhcccchH--
Confidence 35789999999999988731 2457889999999999999999987631 1233455555543321111
Q ss_pred HHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 227 KLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
..-+|.+.. ..... ....+...+++....+|+||+++..
T Consensus 641 --~~l~g~~~g-~~g~~-~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 --ARLIGAPPG-YVGYE-EGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred --HHhcCCCCC-ccCcc-cccHHHHHHHcCCCcEEEEeccccC
Confidence 111121111 01110 0123444444345569999999866
No 238
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.97 E-value=0.038 Score=62.39 Aligned_cols=92 Identities=23% Similarity=0.270 Sum_probs=56.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhcc----CCCeeEEEEECCCCCHHHHHHHHHHHhhhhh---------ccCCCHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFVEVTQTPDLQTIQNKLSSDLELEF---------KQNENVF 243 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 243 (1728)
-.++.|+|.+|+|||++|.+++....... .=..++|++....++...+. +++...+... ....+.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHH
Confidence 46999999999999999999988763221 01568999988777665543 3333322211 1122344
Q ss_pred HHHHHHHHHHH---cCCcEEEEEeCCCCc
Q 000280 244 QRAEKLRQRLK---NVKRVLVILDNIWKL 269 (1728)
Q Consensus 244 ~~~~~l~~~l~---~~~~~LlVlDdv~~~ 269 (1728)
+....+.+... ..+.-++|+|.+...
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis~l 126 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVAAL 126 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcchh
Confidence 44444433332 345669999998543
No 239
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.96 E-value=0.022 Score=72.26 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=41.0
Q ss_pred ccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 154 ~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
....++|.+..++.+..++.......|.|+|..|+|||++|+.+++..+
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999998887766566788999999999999999987653
No 240
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.96 E-value=0.063 Score=72.12 Aligned_cols=106 Identities=16% Similarity=0.214 Sum_probs=60.4
Q ss_pred ccccchHHHHHHHHHHHhc-------C--CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLKD-------T--NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQN 226 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~-------~--~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (1728)
..++|.+..++.+.+.+.. + ...++.++|+.|+|||++|+.+++.... .-...+.++++.-.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~--~~~~~i~id~se~~~~~---- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD--SDDAMVRIDMSEFMEKH---- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc--CCCcEEEEEhHHhhhhh----
Confidence 3578999999998888862 1 1247889999999999999999986631 12234555544322111
Q ss_pred HHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 227 KLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
.+.+-+|.+.. .....+ ...+...++....-+|+||+++..
T Consensus 642 ~~~~LiG~~pg-y~g~~~-~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 SVSRLVGAPPG-YVGYEE-GGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred hHHHHhCCCCc-ccccch-hHHHHHHHHhCCCCeEEEeehhhC
Confidence 11111221111 111111 122344444344569999999755
No 241
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.062 Score=68.46 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=85.3
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHc
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1728)
..+.+.++|++|.|||.||+++++... .+| +.+... + +..... -..+..+..+++.-.+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~--~~f-----i~v~~~----~----l~sk~v------Gesek~ir~~F~~A~~ 333 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR--SRF-----ISVKGS----E----LLSKWV------GESEKNIRELFEKARK 333 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC--CeE-----EEeeCH----H----Hhcccc------chHHHHHHHHHHHHHc
Confidence 456899999999999999999999653 223 332221 1 111111 1122344445555445
Q ss_pred CCcEEEEEeCCCCccccccccC------CCccccccc--CCCCCCeEEEEEeCCchhhccc--C--CCccEEEccCCCHH
Q 000280 256 VKRVLVILDNIWKLLNLDAVGI------PFGDVKKER--NDDRSRCTVLLTSRNRDVLCND--M--NSQKFFLIEVLSYE 323 (1728)
Q Consensus 256 ~~~~LlVlDdv~~~~~~~~l~~------~~~~~~~~~--~~~~~g~~ilvTtR~~~v~~~~--~--~~~~~~~l~~L~~~ 323 (1728)
..+..|.+|+++....+..-.. ....+.... .....+..||-||-........ . .-+..+.++.-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 7899999999987643332110 000000001 1123343344445443322211 1 23568999999999
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHhCC
Q 000280 324 EAWCLFEKIVGDSAKASDFRVIADEIVRRCGG 355 (1728)
Q Consensus 324 ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g 355 (1728)
+..+.|+.+..+...........+++++...|
T Consensus 414 ~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 414 ERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 99999999986422221112223445554444
No 242
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.89 E-value=0.037 Score=63.06 Aligned_cols=90 Identities=24% Similarity=0.326 Sum_probs=57.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccC----CCeeEEEEECCCCCHHHHHHHHHHHhhhhhc---------cCCCHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKL----FDKVVFVEVTQTPDLQTIQNKLSSDLELEFK---------QNENVFQ 244 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~~ 244 (1728)
.+.=|+|.+|+|||+||.+++-....... =..++||+-...+...++. +|++..+.+.+ ...+..+
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~ 117 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEE 117 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHH
Confidence 58889999999999999998876543221 2459999999989888775 56766543221 0122333
Q ss_pred H---HHHHHHHHHcCCcEEEEEeCCCC
Q 000280 245 R---AEKLRQRLKNVKRVLVILDNIWK 268 (1728)
Q Consensus 245 ~---~~~l~~~l~~~~~~LlVlDdv~~ 268 (1728)
. ...+...+.+.+--|||+|.+-.
T Consensus 118 l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 118 LLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHhhccccceEEEEecchHH
Confidence 3 23333444445666889998754
No 243
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.84 E-value=0.021 Score=67.19 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=29.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEE
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEV 215 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 215 (1728)
...+.++|..|+|||.||.++++....+ -..|+|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEH
Confidence 3789999999999999999999988543 235677754
No 244
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.82 E-value=0.051 Score=65.41 Aligned_cols=142 Identities=14% Similarity=0.105 Sum_probs=80.6
Q ss_pred ccchHHHHHHHHHHHh-cCCce-EEEEEcCCcchHHHHHHHHHHHHHhcc-------------------CCCeeEEEEEC
Q 000280 158 FDSRMKIFQNIMEVLK-DTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDK-------------------LFDKVVFVEVT 216 (1728)
Q Consensus 158 ~~gR~~~~~~l~~~L~-~~~~~-~i~I~G~gG~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~ 216 (1728)
++|.+....++..+.. ..+.+ .+.++|+.|+||||+|..+++..--.. ....+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566777778888877 33344 499999999999999999999874221 12344555544
Q ss_pred CCCC---HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc--cccccCCCcccccccCCCCC
Q 000280 217 QTPD---LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN--LDAVGIPFGDVKKERNDDRS 291 (1728)
Q Consensus 217 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~ 291 (1728)
+... ..+..+++.+....... .++.-++|+|+++.... -..+...+.. ...
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEe-------p~~ 138 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEE-------PPK 138 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhcc-------CCC
Confidence 4433 22333333333221110 25788999999988732 2222222222 345
Q ss_pred CeEEEEEeCCc-hhhcccCCCccEEEccCCCHH
Q 000280 292 RCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYE 323 (1728)
Q Consensus 292 g~~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ 323 (1728)
.+.+|++|... .+..........+++.+.+..
T Consensus 139 ~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 139 NTRFILITNDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred CeEEEEEcCChhhccchhhhcceeeecCCchHH
Confidence 67777777633 333212223456677664333
No 245
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.81 E-value=0.013 Score=68.34 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=41.0
Q ss_pred cccchHHHHHHHHHHHhc------CCceEEEEEcCCcchHHHHHHHHHHHHHh
Q 000280 157 QFDSRMKIFQNIMEVLKD------TNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1728)
Q Consensus 157 ~~~gR~~~~~~l~~~L~~------~~~~~i~I~G~gG~GKTtLa~~~~~~~~~ 203 (1728)
.++|.++.++++++++.. ...++++++|++|+||||||+.+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 688999999999999973 23578999999999999999999998853
No 246
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.80 E-value=0.53 Score=57.07 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=28.9
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEE
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEV 215 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 215 (1728)
...+|.++|..|+||||.|..++...+.+ .+ .++.|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~-kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK-GF-KPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CC-CEEEEcC
Confidence 35799999999999999999999877533 22 4455544
No 247
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.79 E-value=0.0058 Score=66.40 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=22.8
Q ss_pred ccEEEecCccCCCccccccccCCceeecCCC--CCC-ccchHhhccccccEEeccCc
Q 000280 585 LRTLSLEGCQVGDVAIVGQLKKLEILSFRNS--DIQ-QLPREIGQLVQLRLLDLRNC 638 (1728)
Q Consensus 585 Lr~L~L~~~~i~~~~~i~~L~~L~~L~Ls~~--~i~-~LP~~i~~L~~L~~L~L~~~ 638 (1728)
|+.|++.++.++....+-.|.+|++|+++.| ++. .++.-+-++.+|++|++++|
T Consensus 45 le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 45 LELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred hhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 3333333433333333444444444444444 222 33333333355555555554
No 248
>PRK06526 transposase; Provisional
Probab=95.78 E-value=0.011 Score=67.05 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=43.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1728)
...+.++|++|+|||+||..++...... .+ .+.|+ +..++...+.... . ..... .....+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~-g~-~v~f~------t~~~l~~~l~~~~----~-~~~~~----~~l~~l~-- 158 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA-GH-RVLFA------TAAQWVARLAAAH----H-AGRLQ----AELVKLG-- 158 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC-CC-chhhh------hHHHHHHHHHHHH----h-cCcHH----HHHHHhc--
Confidence 3568999999999999999999887532 22 34443 3334444443221 1 11111 1122332
Q ss_pred CcEEEEEeCCCCc
Q 000280 257 KRVLVILDNIWKL 269 (1728)
Q Consensus 257 ~~~LlVlDdv~~~ 269 (1728)
+.-+||+||+...
T Consensus 159 ~~dlLIIDD~g~~ 171 (254)
T PRK06526 159 RYPLLIVDEVGYI 171 (254)
T ss_pred cCCEEEEcccccC
Confidence 4568999999754
No 249
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.76 E-value=0.1 Score=61.53 Aligned_cols=157 Identities=13% Similarity=0.098 Sum_probs=79.6
Q ss_pred cCCceEEEEEcCCcchHHHHHHHHHHHHHhc---------------------cCCCeeEEEEECCCCCHHHHHHHHHHHh
Q 000280 174 DTNVGMIGVYGVNGVGKTTLVKQIAMQVIED---------------------KLFDKVVFVEVTQTPDLQTIQNKLSSDL 232 (1728)
Q Consensus 174 ~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~---------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l 232 (1728)
+.-.+.+.++|+.|+||||+|+.+++..--. .|.| +.++.-.....- -
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD-~~~~~p~~~~~~----------~ 86 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD-FYEITPLSDEPE----------N 86 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEEeccccccc----------c
Confidence 3345678899999999999999999976311 1122 112211000000 0
Q ss_pred hhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEEEeCCch-hh
Q 000280 233 ELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD-VL 305 (1728)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~-v~ 305 (1728)
+ ... ..-..+.++.+.+.+. .+++-++|+|+++..+ ..+.+...+.. ...++.+|++|.+.. +.
T Consensus 87 g-~~~-~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEe-------p~~~~~~Ilvth~~~~ll 157 (325)
T PRK08699 87 G-RKL-LQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEE-------PPPQVVFLLVSHAADKVL 157 (325)
T ss_pred c-ccC-CCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHh-------CcCCCEEEEEeCChHhCh
Confidence 0 000 0001222333333333 2345566678887653 12222221221 123455676776653 43
Q ss_pred cccCCCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHH
Q 000280 306 CNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 359 (1728)
Q Consensus 306 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 359 (1728)
.........+.+.+++.+++.+.+.+. |. .. .. ..+..++|-|+.
T Consensus 158 ~ti~SRc~~~~~~~~~~~~~~~~L~~~-~~----~~-~~---~~l~~~~g~p~~ 202 (325)
T PRK08699 158 PTIKSRCRKMVLPAPSHEEALAYLRER-GV----AE-PE---ERLAFHSGAPLF 202 (325)
T ss_pred HHHHHHhhhhcCCCCCHHHHHHHHHhc-CC----Cc-HH---HHHHHhCCChhh
Confidence 322233568899999999998888653 21 11 11 123568899964
No 250
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.75 E-value=0.0084 Score=60.01 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
+|+|.|++|+||||+|+++++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 251
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.72 E-value=0.3 Score=58.74 Aligned_cols=44 Identities=27% Similarity=0.517 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhc---CCceEEEEEcCCcchHHHHHHHHHHHHHhc
Q 000280 161 RMKIFQNIMEVLKD---TNVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1728)
Q Consensus 161 R~~~~~~l~~~L~~---~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~ 204 (1728)
|+...+.|.+.+.+ ....+|+|.|.=|+|||++.+++.+..+..
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34556677777774 467899999999999999999999988644
No 252
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.71 E-value=0.032 Score=65.25 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=59.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhc----cCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhcc---------CCCHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIED----KLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ---------NENVF 243 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 243 (1728)
-+++-|+|.+|+|||+++.+++-..... ..=..++||+....++.+++. +++++++.+.+. ..+.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHH
Confidence 3688899999999999999987644321 112468999999988888875 467777654321 11222
Q ss_pred HH---HHHHHHHHHcCCcEEEEEeCCCC
Q 000280 244 QR---AEKLRQRLKNVKRVLVILDNIWK 268 (1728)
Q Consensus 244 ~~---~~~l~~~l~~~~~~LlVlDdv~~ 268 (1728)
+. +..+...+.+.+--|||+|.+-.
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 22 23344445444556889998754
No 253
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.70 E-value=0.25 Score=54.04 Aligned_cols=207 Identities=12% Similarity=0.156 Sum_probs=113.6
Q ss_pred cccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHh----ccCCCeeEEEEECCC----------C---
Q 000280 157 QFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIE----DKLFDKVVFVEVTQT----------P--- 219 (1728)
Q Consensus 157 ~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~----------~--- 219 (1728)
...++++....+.......+.+...++|+.|.||-|.+..+.++.-- +-.-+..-|.+-+.. .
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 35667777777776666667889999999999999999888876621 111223344432222 1
Q ss_pred --------CHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcE-EEEEeCCCCc--cccccccCCCcccccccCC
Q 000280 220 --------DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRV-LVILDNIWKL--LNLDAVGIPFGDVKKERND 288 (1728)
Q Consensus 220 --------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~-LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~ 288 (1728)
.-.-+.++|+++.+.... +. .+..+.| ++|+-.+++. +.-.+++.-...
T Consensus 94 itPSDaG~~DRvViQellKevAQt~q-----------ie--~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk------- 153 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQ-----------IE--TQGQRPFKVVVINEADELTRDAQHALRRTMEK------- 153 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcc-----------hh--hccccceEEEEEechHhhhHHHHHHHHHHHHH-------
Confidence 112233444444432221 00 0012334 4555555443 111222222221
Q ss_pred CCCCeEEEEEeCC--chhhcccCCCccEEEccCCCHHHHHHHHHHHhCCC-CCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 000280 289 DRSRCTVLLTSRN--RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDS-AKASDFRVIADEIVRRCGGLPVAIKTIAN 365 (1728)
Q Consensus 289 ~~~g~~ilvTtR~--~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~i~~~c~glPLai~~~a~ 365 (1728)
-...||+|+..-+ +-+.. .....-.+++...+++|-...+.+.+..+ ..-+ .+++.+|+++++|.---...+-.
T Consensus 154 Ys~~~RlIl~cns~SriIep-IrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE 230 (351)
T KOG2035|consen 154 YSSNCRLILVCNSTSRIIEP-IRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLE 230 (351)
T ss_pred HhcCceEEEEecCcccchhH-HhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHH
Confidence 2456777763221 11111 12234578899999999999999887432 2223 68899999999987643333333
Q ss_pred HHh--cC---------CchhHHHHHHHHhccc
Q 000280 366 ALK--NK---------RLYVWNDSLERLRNST 386 (1728)
Q Consensus 366 ~L~--~~---------~~~~w~~~~~~l~~~~ 386 (1728)
+++ +. +..+|+-+++++....
T Consensus 231 ~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i 262 (351)
T KOG2035|consen 231 AVRVNNEPFTANSQVIPKPDWEIYIQEIARVI 262 (351)
T ss_pred HHHhccccccccCCCCCCccHHHHHHHHHHHH
Confidence 332 11 2345999888776543
No 254
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.68 E-value=0.065 Score=60.52 Aligned_cols=91 Identities=23% Similarity=0.361 Sum_probs=58.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhh------hccCCCHHH------
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELE------FKQNENVFQ------ 244 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~------ 244 (1728)
..++|+|..|+||||||+++++..+.+ +-+.++++-+++.. ++.++.+++...=... ...++....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~ 148 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVAL 148 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 578999999999999999999998642 23556777777765 4666666665431110 000121111
Q ss_pred HHHHHHHHHH-c-CCcEEEEEeCCCCc
Q 000280 245 RAEKLRQRLK-N-VKRVLVILDNIWKL 269 (1728)
Q Consensus 245 ~~~~l~~~l~-~-~~~~LlVlDdv~~~ 269 (1728)
.+-.+.+++. + ++++|+|+||+-..
T Consensus 149 ~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 2234556664 3 79999999998554
No 255
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.042 Score=61.08 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=24.6
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHh
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~ 203 (1728)
-|+|.++|++|.|||+|.++.++...+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 478999999999999999999998855
No 256
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.073 Score=66.11 Aligned_cols=94 Identities=18% Similarity=0.321 Sum_probs=66.7
Q ss_pred cccccchHHHHHHHHHHHh---------cCC---ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHH
Q 000280 155 YEQFDSRMKIFQNIMEVLK---------DTN---VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ 222 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~---------~~~---~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (1728)
..++-|-++...+|.+-+. ..+ ..-|.+||++|.|||-+|++|+.... .-|++|-.+
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP---- 739 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP---- 739 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH----
Confidence 3456788888888888765 122 34688999999999999999999874 235666553
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 223 TIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
+++..-- ...++.+++++++-++.+++.|.||.+++.
T Consensus 740 ----ELLNMYV------GqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ----ELLNMYV------GQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred ----HHHHHHh------cchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 1222211 123456777888888789999999999875
No 257
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.0012 Score=71.14 Aligned_cols=106 Identities=25% Similarity=0.398 Sum_probs=73.6
Q ss_pred CCCcccEEEecCccCCCccccccccCCceeecCCCCCCccchHhhccccccEEeccCcccccccCc-cccccCcccceec
Q 000280 581 CLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAP-NVISKLSRLEELY 659 (1728)
Q Consensus 581 ~L~~Lr~L~L~~~~i~~~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~L~~L~~L~ 659 (1728)
.|.+.+-|++-||.++++....++..|++|.||-|.|+.|- .+..+++|+.|.|..| .|.++.. ..+.+|++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 34566777888888888888888888888888888888773 3777888888888887 5655532 1256788888888
Q ss_pred cCCCccccccccCCCccchhhhcCCCCCCeEE
Q 000280 660 MGDSFSQWEKVEGGSNASLVELKGLSKLTTLE 691 (1728)
Q Consensus 660 l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 691 (1728)
+..|..- .....+....-|.-|++|++|+
T Consensus 95 L~ENPCc---~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCC---GEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcc---cccchhHHHHHHHHcccchhcc
Confidence 8776542 1111223344567778887776
No 258
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.013 Score=74.61 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=95.4
Q ss_pred cccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCC----eeEEEEECCCCCHHHHHHHHHH
Q 000280 155 YEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD----KVVFVEVTQTPDLQTIQNKLSS 230 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~ 230 (1728)
....+||++|++.+++.|....-.--.++|.+|||||++|.-++.+....+-.+ ..++. .| +..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD-------~g~ 236 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LD-------LGS 236 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ec-------HHH
Confidence 345789999999999999855444556899999999999999999885432221 11111 01 111
Q ss_pred HhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc--------cccccCCCcccccccCCCCCCeEEE-EEeCC
Q 000280 231 DLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN--------LDAVGIPFGDVKKERNDDRSRCTVL-LTSRN 301 (1728)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--------~~~l~~~~~~~~~~~~~~~~g~~il-vTtR~ 301 (1728)
-...... ..+.+++...+.+.+.+.++.+|++|.++.... .+.-..--|. +..+ .-++| .||-+
T Consensus 237 LvAGaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPa-----LARG-eL~~IGATT~~ 309 (786)
T COG0542 237 LVAGAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPA-----LARG-ELRCIGATTLD 309 (786)
T ss_pred Hhccccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHH-----HhcC-CeEEEEeccHH
Confidence 1111111 234667777788888766799999999887621 1111000111 1112 23444 45544
Q ss_pred chhhcc------cCCCccEEEccCCCHHHHHHHHHHHh
Q 000280 302 RDVLCN------DMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1728)
Q Consensus 302 ~~v~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 333 (1728)
+. -.. .......+.++.-+.+++...++...
T Consensus 310 EY-Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 310 EY-RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HH-HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 32 111 12235678899999999988887654
No 259
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.58 E-value=0.091 Score=68.45 Aligned_cols=174 Identities=15% Similarity=0.173 Sum_probs=90.9
Q ss_pred cccccchHHHHHHHH---HHHhc---------CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHH
Q 000280 155 YEQFDSRMKIFQNIM---EVLKD---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ 222 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~---~~L~~---------~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (1728)
...+.|.+...+++. +++.+ .-.+-|.++|++|+|||++|+.+++.... .| +.++.++
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~--~f---~~is~~~----- 220 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--PF---FTISGSD----- 220 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--CE---EEEehHH-----
Confidence 344566665554444 44332 11345999999999999999999887632 22 2222211
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcccc----------------ccccCCCccccccc
Q 000280 223 TIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNL----------------DAVGIPFGDVKKER 286 (1728)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~----------------~~l~~~~~~~~~~~ 286 (1728)
+.. +.. ... ......+........+.+|++|+++....- ..+...+.. .
T Consensus 221 -~~~-~~~--------g~~-~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg----~ 285 (644)
T PRK10733 221 -FVE-MFV--------GVG-ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG----F 285 (644)
T ss_pred -hHH-hhh--------ccc-HHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc----c
Confidence 111 000 001 112223333334457899999999765210 111000110 0
Q ss_pred CCCCCCeEEEEEeCCchhhccc-C---CCccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCC
Q 000280 287 NDDRSRCTVLLTSRNRDVLCND-M---NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGL 356 (1728)
Q Consensus 287 ~~~~~g~~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 356 (1728)
....+.-||.||...+..... . ..++.+.++..+.++-.++++.+.......++.. ...+++.+.|.
T Consensus 286 -~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G~ 356 (644)
T PRK10733 286 -EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID--AAIIARGTPGF 356 (644)
T ss_pred -cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC--HHHHHhhCCCC
Confidence 023445555677665433321 1 2357888999999888899988875432222211 23466666664
No 260
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.56 E-value=0.033 Score=68.63 Aligned_cols=74 Identities=23% Similarity=0.285 Sum_probs=56.1
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHH-H
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRL-K 254 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~ 254 (1728)
.-++..++|++|.||||||.-++++.- -.|+=|++|+..+...+-..|...+....- + .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG-----YsVvEINASDeRt~~~v~~kI~~avq~~s~---------------l~a 384 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG-----YSVVEINASDERTAPMVKEKIENAVQNHSV---------------LDA 384 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC-----ceEEEecccccccHHHHHHHHHHHHhhccc---------------ccc
Confidence 357899999999999999999999872 357888999888877777777665543221 1 1
Q ss_pred cCCcEEEEEeCCCCc
Q 000280 255 NVKRVLVILDNIWKL 269 (1728)
Q Consensus 255 ~~~~~LlVlDdv~~~ 269 (1728)
..++.-||+|.++..
T Consensus 385 dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCcceEEEecccCC
Confidence 257888999999876
No 261
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.56 E-value=0.06 Score=61.13 Aligned_cols=76 Identities=29% Similarity=0.323 Sum_probs=50.2
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHc
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1728)
...-+.++|.+|+|||.||.+++++.. +. --.|.+++ ..++..++...... .....++.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~-g~sv~f~~------~~el~~~Lk~~~~~--------~~~~~~l~~~l~- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KA-GISVLFIT------APDLLSKLKAAFDE--------GRLEEKLLRELK- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc-CCeEEEEE------HHHHHHHHHHHHhc--------CchHHHHHHHhh-
Confidence 567899999999999999999999996 32 33455654 44455555544432 111233444443
Q ss_pred CCcEEEEEeCCCCc
Q 000280 256 VKRVLVILDNIWKL 269 (1728)
Q Consensus 256 ~~~~LlVlDdv~~~ 269 (1728)
+-=||||||+-..
T Consensus 167 -~~dlLIiDDlG~~ 179 (254)
T COG1484 167 -KVDLLIIDDIGYE 179 (254)
T ss_pred -cCCEEEEecccCc
Confidence 5569999998664
No 262
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.51 E-value=0.034 Score=55.72 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=35.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhc
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFK 237 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 237 (1728)
+|.|.|++|+||||+|+.++++.--. .| +.-.++++||+..|+...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCHH
Confidence 68999999999999999999987321 11 234678889988887654
No 263
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.0056 Score=66.82 Aligned_cols=122 Identities=14% Similarity=0.150 Sum_probs=67.9
Q ss_pred eccccceecccccccccccCCCCccCCCCccCccEEEeccccccccccchHHHHhhcccceeEeecccccccccccCccc
Q 000280 906 IFPSLEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEGVVETNSTE 985 (1728)
Q Consensus 906 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~L~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~ 985 (1728)
.+|.++.|.++.+ +++.+..+.-..-.--+.+++|+...|............+-+|++..+.+..|+.- ........
T Consensus 144 ~lP~vtelHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK-~~s~ek~s- 220 (418)
T KOG2982|consen 144 DLPKVTELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLK-TESSEKGS- 220 (418)
T ss_pred cchhhhhhhhccc-hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCccc-chhhcccC-
Confidence 4666666666665 33322111100011224566777777765443333334456778888888877632 22222111
Q ss_pred cccccccceeeeccccceeeccCCCCcccccccccccccCCccEEEeccCCCccee
Q 000280 986 SRRDEGRLIEIVFPKLLYLRLIDLPKLMGFSIGIHSVEFPSLLELQIDDCPNMKRF 1041 (1728)
Q Consensus 986 ~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~sL~~L~l~~C~~L~~l 1041 (1728)
..||.+..|.|.. .++.+|..-.....||+|..|.+.+.|-...+
T Consensus 221 ----------e~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 221 ----------EPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred ----------CCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 1377777666654 45666665544456899999998888765554
No 264
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.49 E-value=0.046 Score=61.61 Aligned_cols=86 Identities=19% Similarity=0.279 Sum_probs=52.2
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHH-hhh-----hhccCCCHHH---HHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSD-LEL-----EFKQNENVFQ---RAE 247 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~-----~~~~~~~~~~---~~~ 247 (1728)
-.++.|+|.+|+|||++|.+++..... .-..++|++.. ..+...+. +++.. ... ......+..+ ...
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~--~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK--NGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 469999999999999999999987753 24678999887 55554443 23322 000 0001122222 223
Q ss_pred HHHHHHHcCCcEEEEEeCCC
Q 000280 248 KLRQRLKNVKRVLVILDNIW 267 (1728)
Q Consensus 248 ~l~~~l~~~~~~LlVlDdv~ 267 (1728)
.+.+.+. .+.-++|+|.+.
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~ 117 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHH-hcccEEEEeCcH
Confidence 3333343 466789999874
No 265
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.48 E-value=0.045 Score=64.45 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=58.9
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhc----cCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhcc---------CCCHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIED----KLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ---------NENVF 243 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 243 (1728)
-.++-|+|.+|+|||+|+.+++-..... ..-..++||+....++..++. +++++++.+.+. ..+.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEEEecCCCHH
Confidence 3678899999999999999987554321 122468999999999988875 467776654321 12233
Q ss_pred HHH---HHHHHHHHcCCcEEEEEeCCCC
Q 000280 244 QRA---EKLRQRLKNVKRVLVILDNIWK 268 (1728)
Q Consensus 244 ~~~---~~l~~~l~~~~~~LlVlDdv~~ 268 (1728)
+.. ..+...+.+.+--|||+|.+-.
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 322 2333344434556888888754
No 266
>PRK10867 signal recognition particle protein; Provisional
Probab=95.48 E-value=0.84 Score=55.81 Aligned_cols=40 Identities=28% Similarity=0.344 Sum_probs=29.1
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEEC
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVT 216 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 216 (1728)
...+|.++|.+|+||||.|..++...+.+ .-..++.|+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D 138 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAAD 138 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEcc
Confidence 46799999999999999999999877533 12234445443
No 267
>PRK04132 replication factor C small subunit; Provisional
Probab=95.48 E-value=0.17 Score=66.43 Aligned_cols=154 Identities=11% Similarity=0.046 Sum_probs=93.0
Q ss_pred Ec--CCcchHHHHHHHHHHHHHhccCC-CeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcE
Q 000280 183 YG--VNGVGKTTLVKQIAMQVIEDKLF-DKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRV 259 (1728)
Q Consensus 183 ~G--~gG~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 259 (1728)
.| +-|+||||+|..++++.--+ .+ ..++-+++++...+..+. ++...+....+ +...+.-
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~---------------~~~~~~K 632 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIR-EKVKEFARTKP---------------IGGASFK 632 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC---------------cCCCCCE
Confidence 36 78899999999999986211 22 246777777765555443 33322211110 0112457
Q ss_pred EEEEeCCCCcc--ccccccCCCcccccccCCCCCCeEEEEEeCCc-hhhcccCCCccEEEccCCCHHHHHHHHHHHhCCC
Q 000280 260 LVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDS 336 (1728)
Q Consensus 260 LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 336 (1728)
++|+|+++... ..+.+...+.. -...+++|++|.+. .+..........+++.+++.++-...+...+...
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEe-------p~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~E 705 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEM-------FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE 705 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhC-------CCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhc
Confidence 99999999873 34444333332 23456666665544 3332223335689999999999988888766321
Q ss_pred CCCCchHHHHHHHHHHhCCChHHHH
Q 000280 337 AKASDFRVIADEIVRRCGGLPVAIK 361 (1728)
Q Consensus 337 ~~~~~~~~~~~~i~~~c~glPLai~ 361 (1728)
.- .-.++....|++.++|-+..+.
T Consensus 706 gi-~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 706 GL-ELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred CC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 11 1125578899999999885443
No 268
>PRK09183 transposase/IS protein; Provisional
Probab=95.48 E-value=0.025 Score=64.55 Aligned_cols=35 Identities=31% Similarity=0.378 Sum_probs=26.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEE
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVE 214 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~ 214 (1728)
..+.|+|+.|+|||+||..+++..... -..+.+++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~--G~~v~~~~ 137 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTT 137 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 467899999999999999998876432 22344553
No 269
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.8 Score=49.12 Aligned_cols=93 Identities=20% Similarity=0.192 Sum_probs=57.2
Q ss_pred ccccchHHHHHHHHHHHh-------------cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHH
Q 000280 156 EQFDSRMKIFQNIMEVLK-------------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ 222 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~-------------~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (1728)
..+-|-+-...++.++.. -+..+-|.++|++|.|||.||++|+++.... ||.|-..
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~-------firvvgs---- 223 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA-------FIRVVGS---- 223 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh-------eeeeccH----
Confidence 344566655666666554 1356788999999999999999999987432 3333221
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 223 TIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
++.++ -+|. . ...+..+++.-+++.+-+|.+|.|+..
T Consensus 224 efvqk---ylge-g------prmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 224 EFVQK---YLGE-G------PRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred HHHHH---Hhcc-C------cHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 11111 1111 1 123445555556678889999998765
No 270
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.45 E-value=0.069 Score=56.66 Aligned_cols=40 Identities=38% Similarity=0.591 Sum_probs=31.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCC
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 220 (1728)
++.|+|.+|+||||+|+.++..... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 4689999999999999999998853 345678888766543
No 271
>PRK07261 topology modulation protein; Provisional
Probab=95.44 E-value=0.024 Score=60.43 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=25.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHHhc-cCCCeeEE
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVIED-KLFDKVVF 212 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~~~-~~f~~~~w 212 (1728)
.|+|+|++|+||||||++++...... -+.|.+.|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999998775321 23455555
No 272
>PRK04296 thymidine kinase; Provisional
Probab=95.42 E-value=0.017 Score=62.76 Aligned_cols=112 Identities=20% Similarity=0.115 Sum_probs=63.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhcc--CCCHHHHHHHHHHHHHc
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ--NENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 255 (1728)
.++.|+|..|.||||+|..++.+.... ...++.+. ...+.......++.+++..... .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 477899999999999999999988533 33444442 1112222233456666643321 1223333333433 32
Q ss_pred CCcEEEEEeCCCCc--cccccccCCCcccccccCCCCCCeEEEEEeCCchh
Q 000280 256 VKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDV 304 (1728)
Q Consensus 256 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v 304 (1728)
++.-+||+|.+.-. ++..++...+ ...|..||+|.++...
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---------~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---------DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---------HHcCCeEEEEecCccc
Confidence 34558999999543 1122221111 2467789999988653
No 273
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.42 E-value=0.082 Score=61.76 Aligned_cols=95 Identities=19% Similarity=0.287 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHhc----CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhh
Q 000280 160 SRMKIFQNIMEVLKD----TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELE 235 (1728)
Q Consensus 160 gR~~~~~~l~~~L~~----~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 235 (1728)
+|........+++.+ ...+-+.++|..|+|||.||.++++....+ . ..+.|+++ .++..++....+
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g-~~v~~~~~------~~l~~~lk~~~~-- 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-G-VSSTLLHF------PEFIRELKNSIS-- 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-C-CCEEEEEH------HHHHHHHHHHHh--
Confidence 455555555566552 245679999999999999999999998632 2 33556644 344444444432
Q ss_pred hccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc--cccc
Q 000280 236 FKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL--LNLD 273 (1728)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~ 273 (1728)
..+. ....+.++ +-=||||||+... .+|.
T Consensus 205 ---~~~~----~~~l~~l~--~~dlLiIDDiG~e~~s~~~ 235 (306)
T PRK08939 205 ---DGSV----KEKIDAVK--EAPVLMLDDIGAEQMSSWV 235 (306)
T ss_pred ---cCcH----HHHHHHhc--CCCEEEEecCCCccccHHH
Confidence 1111 22334443 6779999999654 4453
No 274
>PRK06696 uridine kinase; Validated
Probab=95.42 E-value=0.023 Score=63.71 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHh---cCCceEEEEEcCCcchHHHHHHHHHHHHHh
Q 000280 160 SRMKIFQNIMEVLK---DTNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1728)
Q Consensus 160 gR~~~~~~l~~~L~---~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~ 203 (1728)
.|.+.+++|.+.+. .....+|+|.|.+|+||||+|++++.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47778888888875 346789999999999999999999998753
No 275
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.38 E-value=0.023 Score=74.32 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=61.0
Q ss_pred cccchHHHHHHHHHHHhc---------CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHH
Q 000280 157 QFDSRMKIFQNIMEVLKD---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNK 227 (1728)
Q Consensus 157 ~~~gR~~~~~~l~~~L~~---------~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (1728)
.++|.++.++.+.+++.. .....+.++|+.|+|||++|+.++.... ...+.+++++..+...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CCcEEeechhhccccc----
Confidence 468889999998888861 1245788999999999999999988762 2234455443322111
Q ss_pred HHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 228 LSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
+.+-+|.+.. ... .+....+.+.+.+...-+|+||+++..
T Consensus 530 ~~~LiG~~~g-yvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPG-YVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCC-ccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 1111222111 000 011123444455456679999999876
No 276
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.37 E-value=0.06 Score=63.97 Aligned_cols=89 Identities=18% Similarity=0.175 Sum_probs=53.7
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHc
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT-PDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1728)
-.+++++|+.|+||||++.+++.....+.....+..|+.... ....+-++..++.++.+.....+..+.. .....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~-~~l~~l~- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ-LALAELR- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHH-HHHHHhc-
Confidence 369999999999999999999988743322245666654332 2344455566667776554222222222 2233443
Q ss_pred CCcEEEEEeCCCC
Q 000280 256 VKRVLVILDNIWK 268 (1728)
Q Consensus 256 ~~~~LlVlDdv~~ 268 (1728)
++=++++|..-.
T Consensus 215 -~~DlVLIDTaG~ 226 (374)
T PRK14722 215 -NKHMVLIDTIGM 226 (374)
T ss_pred -CCCEEEEcCCCC
Confidence 445666998753
No 277
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.34 E-value=0.034 Score=74.78 Aligned_cols=106 Identities=15% Similarity=0.212 Sum_probs=62.2
Q ss_pred ccccchHHHHHHHHHHHhc-------C--CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLKD-------T--NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQN 226 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~-------~--~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 226 (1728)
..++|.+..++.+.+++.. + ....+.++|+.|+|||+||+.+++..-.. -...+-++.++-.+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccHHH
Confidence 4578999999999888861 1 23456789999999999999999876211 12345555554332222111
Q ss_pred HHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 227 KLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
-+|.+.. .... +....+.+.+++...-+++||+++..
T Consensus 587 ----l~g~~~g-yvg~-~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 587 ----LIGSPPG-YVGY-NEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred ----hcCCCCc-ccCc-CccchHHHHHHhCCCeEEEECChhhC
Confidence 1121110 0000 01123455555445579999999865
No 278
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.22 E-value=0.042 Score=59.12 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=29.6
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEE
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVE 214 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~ 214 (1728)
...+|.+.|+.|+||||+|+.+++.... .+..+++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~--~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL--KYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEe
Confidence 3469999999999999999999998853 455666653
No 279
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.15 E-value=0.072 Score=63.29 Aligned_cols=57 Identities=26% Similarity=0.387 Sum_probs=42.5
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccC----CCeeEEEEECCCCCHHHHHHHHHHHhhh
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKL----FDKVVFVEVTQTPDLQTIQNKLSSDLEL 234 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 234 (1728)
-.++-|+|.+|+|||++|.+++........ =..++||+..+.++..++. ++++.++.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 468889999999999999999877542211 1479999999888877765 45555543
No 280
>PHA02244 ATPase-like protein
Probab=95.13 E-value=0.084 Score=61.75 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=24.7
Q ss_pred HHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 167 NIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 167 ~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
.+.+++.. + .-|.|+|++|+|||++|+++++..
T Consensus 111 ri~r~l~~-~-~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 111 DIAKIVNA-N-IPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred HHHHHHhc-C-CCEEEECCCCCCHHHHHHHHHHHh
Confidence 34444433 2 356789999999999999999875
No 281
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.11 E-value=0.12 Score=58.63 Aligned_cols=87 Identities=14% Similarity=0.320 Sum_probs=55.7
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhc-------------------
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFK------------------- 237 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------- 237 (1728)
-.++.|.|.+|+|||++|.+++..... .-+.++||+..+ +..++.+.+. +++.+..
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~--~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~~~ 95 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGGIG 95 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEeccccccc
Confidence 469999999999999999998776532 246788998766 3444544432 3332110
Q ss_pred -----------cCCCHHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 000280 238 -----------QNENVFQRAEKLRQRLKNVKRVLVILDNIWK 268 (1728)
Q Consensus 238 -----------~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~ 268 (1728)
...+..+....+.+.+.+.+.-.+|+|.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 96 EAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred cccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 0123445556666666544555799998765
No 282
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.16 Score=59.76 Aligned_cols=90 Identities=19% Similarity=0.218 Sum_probs=49.6
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1728)
+.++|+++|++|+||||++..++.....+ . ..+..++..... ...+-+...+..++.+.....+..+... ..+.++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~-aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-K-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTR-ALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-C-CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHH-HHHHHH
Confidence 35799999999999999999999877532 2 245555543221 1222223344455544332234444333 233333
Q ss_pred cC-CcEEEEEeCCCC
Q 000280 255 NV-KRVLVILDNIWK 268 (1728)
Q Consensus 255 ~~-~~~LlVlDdv~~ 268 (1728)
+. +.=++++|-.-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 21 234677787643
No 283
>PRK06921 hypothetical protein; Provisional
Probab=95.08 E-value=0.081 Score=60.65 Aligned_cols=72 Identities=22% Similarity=0.317 Sum_probs=45.3
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHc
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1728)
....+.++|..|+|||.||.++++....+ ....++|++. .+++..+...+ +......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~-~g~~v~y~~~------~~l~~~l~~~~-----------~~~~~~~~~~~- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK-KGVPVLYFPF------VEGFGDLKDDF-----------DLLEAKLNRMK- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh-cCceEEEEEH------HHHHHHHHHHH-----------HHHHHHHHHhc-
Confidence 45689999999999999999999987532 1345677764 22333332221 01112233443
Q ss_pred CCcEEEEEeCCC
Q 000280 256 VKRVLVILDNIW 267 (1728)
Q Consensus 256 ~~~~LlVlDdv~ 267 (1728)
+-=||||||+.
T Consensus 177 -~~dlLiIDDl~ 187 (266)
T PRK06921 177 -KVEVLFIDDLF 187 (266)
T ss_pred -CCCEEEEeccc
Confidence 55699999993
No 284
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.05 E-value=0.051 Score=62.91 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 175 ~~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
..++.++|||++|+|||.+|+++++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 3467899999999999999999999874
No 285
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.04 E-value=0.023 Score=58.29 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=28.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEE
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVE 214 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~ 214 (1728)
.+|.+.|.+|+||||||+++.++.... -..+++++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 589999999999999999999999644 34455554
No 286
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.03 E-value=0.16 Score=57.26 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=25.9
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHh
Q 000280 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1728)
Q Consensus 175 ~~~~~i~I~G~gG~GKTtLa~~~~~~~~~ 203 (1728)
....+|+|.|..|+|||||++.++...+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45789999999999999999999988854
No 287
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.00 E-value=0.068 Score=63.15 Aligned_cols=91 Identities=16% Similarity=0.186 Sum_probs=57.9
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhcc----CCCeeEEEEECCCCCHHHHHHHHHHHhhhhhcc---------CCCHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ---------NENVF 243 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 243 (1728)
-.++-|+|.+|+|||++|..++-...... .-..++||+....++.+++. +|++.++..... ..+.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCHH
Confidence 46888999999999999998886543211 11369999999998888764 667776654321 12223
Q ss_pred HHHHH---HHHHHHcCCcEEEEEeCCCC
Q 000280 244 QRAEK---LRQRLKNVKRVLVILDNIWK 268 (1728)
Q Consensus 244 ~~~~~---l~~~l~~~~~~LlVlDdv~~ 268 (1728)
..... +...+...+--|||+|.+-.
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 32222 22223334566888888754
No 288
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.99 E-value=0.11 Score=60.30 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=55.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhc-----cCCCHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFK-----QNENVFQRAEKLRQ 251 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 251 (1728)
-+++-|+|..|+||||||.++...... .-..++||+.....+.. .+.++|.+.+ +.+..++....+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~--~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQK--QGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--TT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhc--ccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 469999999999999999999987743 24568999988877654 3455555433 13444555555555
Q ss_pred HHHcCCcEEEEEeCCCCc
Q 000280 252 RLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 252 ~l~~~~~~LlVlDdv~~~ 269 (1728)
.++.+.--++|+|.|...
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 566555568999998765
No 289
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.96 E-value=0.076 Score=62.46 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=41.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhcc----CCCeeEEEEECCCCCHHHHHHHHHHHhhh
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFVEVTQTPDLQTIQNKLSSDLEL 234 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 234 (1728)
-.++.|+|.+|+||||+|.+++....... .-..++||+....++..++ .++++.++.
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 46899999999999999999886443211 1235799998887777764 445665544
No 290
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.63 Score=50.13 Aligned_cols=52 Identities=23% Similarity=0.274 Sum_probs=41.8
Q ss_pred ccCccccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 151 SYTAYEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 151 ~~~~~~~~~gR~~~~~~l~~~L~~-------------~~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
|...+..+-|-++.++++++++.= ..++-|..+|++|.|||-+|++.+.+-.
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 445567788999999999998751 2356788999999999999999887653
No 291
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.95 E-value=0.074 Score=60.45 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=75.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHHhccCC----------CeeEEEEECCCCC-HHHHHHHHHHHhhhhhc---------c
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLF----------DKVVFVEVTQTPD-LQTIQNKLSSDLELEFK---------Q 238 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~~~~~f----------~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~---------~ 238 (1728)
+..|+|++|+|||+||.+++........| ..|++++.....+ +.+-+..+...++.... .
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 56789999999999999999876543222 2356666555432 33334444443321000 0
Q ss_pred -------C---CCHHHHHHHHHHHHHcCCcEEEEEeCCCCc--------cccccccCCCcccccccCCCCCCeEEEEEeC
Q 000280 239 -------N---ENVFQRAEKLRQRLKNVKRVLVILDNIWKL--------LNLDAVGIPFGDVKKERNDDRSRCTVLLTSR 300 (1728)
Q Consensus 239 -------~---~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--------~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR 300 (1728)
. .........+.+.+...+.-+||+|-+... .....+...+..+ ....|+.||+++.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~-----a~~~g~avl~v~H 157 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRI-----AAQTGAAILLVHH 157 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHH-----HHHhCCEEEEEec
Confidence 0 012233444555454357789999975321 1122221111110 0234777888876
Q ss_pred Cchhhcc--------------cCCCccEEEccCCCHHHHHH
Q 000280 301 NRDVLCN--------------DMNSQKFFLIEVLSYEEAWC 327 (1728)
Q Consensus 301 ~~~v~~~--------------~~~~~~~~~l~~L~~~ea~~ 327 (1728)
...-... .-.+...+.+..++.+|+.+
T Consensus 158 ~~K~~~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 158 VRKGSAKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred cCcccccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 5532210 11123577788888888766
No 292
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.93 E-value=0.11 Score=60.17 Aligned_cols=88 Identities=22% Similarity=0.301 Sum_probs=49.2
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1728)
..++|+|+|++|+||||++..++.....+..-..|..|+..... ...+-+...++.++.+.....+..+. ....+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l-~~~l~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKEL-RKALDRLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHH-HHHHHHcc
Confidence 34699999999999999999999887543111356666654321 12223333444455444322333333 23333333
Q ss_pred cCCcEEEEEeCC
Q 000280 255 NVKRVLVILDNI 266 (1728)
Q Consensus 255 ~~~~~LlVlDdv 266 (1728)
..=+|++|..
T Consensus 272 --~~d~vliDt~ 281 (282)
T TIGR03499 272 --DKDLILIDTA 281 (282)
T ss_pred --CCCEEEEeCC
Confidence 2347777754
No 293
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.91 E-value=0.082 Score=59.22 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=33.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 220 (1728)
-.++.|+|.+|+||||+|.+++..... .-..++|++....++
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~--~g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAG--QGKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCCCCH
Confidence 468999999999999999999988742 235678887655543
No 294
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.85 E-value=0.097 Score=62.15 Aligned_cols=57 Identities=25% Similarity=0.341 Sum_probs=42.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccC----CCeeEEEEECCCCCHHHHHHHHHHHhhh
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKL----FDKVVFVEVTQTPDLQTIQNKLSSDLEL 234 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 234 (1728)
-.++-|+|.+|+||||++.+++........ =..++||+....++..++. +++..++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 468899999999999999999887642111 1379999999888877664 45555543
No 295
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.85 E-value=0.0096 Score=64.16 Aligned_cols=127 Identities=20% Similarity=0.221 Sum_probs=80.4
Q ss_pred cCCCcceEEEecCcCcc-----ccCccccCCCcccEEEecCccCC----C--------ccccccccCCceeecCCCCCC-
Q 000280 557 EGMNELRVVHFTRTCFL-----SLPSSLVCLISLRTLSLEGCQVG----D--------VAIVGQLKKLEILSFRNSDIQ- 618 (1728)
Q Consensus 557 ~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~----~--------~~~i~~L~~L~~L~Ls~~~i~- 618 (1728)
..|..+.-+|||||.|. .+-..|.+-.+|++.+++.-... . .+.+-++++|+..+||+|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 44788888999999875 25556777788888888765422 0 145567788888888888654
Q ss_pred ccchH----hhccccccEEeccCcccccccCccccccCcccceeccCCCccccccccCCCccchhhhcCCCCCCeEEEEe
Q 000280 619 QLPRE----IGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHI 694 (1728)
Q Consensus 619 ~LP~~----i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~ 694 (1728)
..|.. |+.-+.|.||.+++| .+..+..+-||+ .|++|-. ....++-+.|+...+..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigk--al~~la~-----------------nKKaa~kp~Le~vicgr 166 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGK--ALFHLAY-----------------NKKAADKPKLEVVICGR 166 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHH--HHHHHHH-----------------HhhhccCCCceEEEecc
Confidence 44443 566778888888888 565554332332 2333321 12334567777777766
Q ss_pred cccccCchh
Q 000280 695 RDARIMPQD 703 (1728)
Q Consensus 695 ~~~~~~~~~ 703 (1728)
|.+...+..
T Consensus 167 NRlengs~~ 175 (388)
T COG5238 167 NRLENGSKE 175 (388)
T ss_pred chhccCcHH
Confidence 666555543
No 296
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.84 E-value=0.14 Score=64.17 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=43.5
Q ss_pred cccccchHHHHHHHHHHHhc-----CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEE
Q 000280 155 YEQFDSRMKIFQNIMEVLKD-----TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEV 215 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~~-----~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 215 (1728)
..+.+--.+-++++.+||.+ ...+++.+.|++|+||||.++.+++... |+.+-|.+-
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 34455556678888888873 2357899999999999999999999873 677778653
No 297
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.84 E-value=0.19 Score=60.48 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=54.9
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhc--cCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIED--KLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQR 252 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 252 (1728)
..++|.++|+.|+||||.+..++...... ..-..|..|++.... ...+-++..++.++.+........+....+ ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L-~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI-TQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH-HH
Confidence 35799999999999999999999877532 122345666655321 122335566676776654334443333322 22
Q ss_pred HHcCCcEEEEEeCCCC
Q 000280 253 LKNVKRVLVILDNIWK 268 (1728)
Q Consensus 253 l~~~~~~LlVlDdv~~ 268 (1728)
+ .+.-++|+|.+..
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 3556888898754
No 298
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.82 E-value=0.52 Score=54.76 Aligned_cols=167 Identities=11% Similarity=0.035 Sum_probs=93.3
Q ss_pred HHHHHHHHhcCC-ceEEEEEcCCcchHHHHHHHHHHHH--------HhccCCCeeEEEEE-CCCCCHHHHHHHHHHHhhh
Q 000280 165 FQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQV--------IEDKLFDKVVFVEV-TQTPDLQTIQNKLSSDLEL 234 (1728)
Q Consensus 165 ~~~l~~~L~~~~-~~~i~I~G~gG~GKTtLa~~~~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 234 (1728)
++.+...+..+. .++..++|..|.||+++|+.+++.. ....|.+.+.+++. +....+.++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 444555665544 4566799999999999999999987 22223333444432 1222333332 22222221
Q ss_pred hhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc--cccccCCCcccccccCCCCCCeEEEEEe-CCchhhcccCCC
Q 000280 235 EFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN--LDAVGIPFGDVKKERNDDRSRCTVLLTS-RNRDVLCNDMNS 311 (1728)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~g~~ilvTt-R~~~v~~~~~~~ 311 (1728)
.. ...+++-++|+|+++.... .+.+...+.+ -..++.+|++| ....+.......
T Consensus 84 ~~----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-------Pp~~t~~il~~~~~~kll~TI~SR 140 (299)
T PRK07132 84 SS----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEE-------PPKDTYFLLTTKNINKVLPTIVSR 140 (299)
T ss_pred CC----------------cccCCceEEEEecccccCHHHHHHHHHHhhC-------CCCCeEEEEEeCChHhChHHHHhC
Confidence 11 0114788899999876632 3333333332 23456666555 444444322334
Q ss_pred ccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000280 312 QKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 362 (1728)
Q Consensus 312 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 362 (1728)
...+++.++++++..+.+... + . .++.+..++...+|.=-|+..
T Consensus 141 c~~~~f~~l~~~~l~~~l~~~-~--~----~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 141 CQVFNVKEPDQQKILAKLLSK-N--K----EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred eEEEECCCCCHHHHHHHHHHc-C--C----ChhHHHHHHHHcCCHHHHHHH
Confidence 678999999999998777654 2 1 123466677777763344444
No 299
>PTZ00035 Rad51 protein; Provisional
Probab=94.77 E-value=0.11 Score=61.69 Aligned_cols=91 Identities=15% Similarity=0.200 Sum_probs=56.6
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHh----ccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhc---------cCCCHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIE----DKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFK---------QNENVF 243 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 243 (1728)
-.++.|+|..|+|||||+.+++-..+. ...-..++||+....++..++ .++++.++.... ...+.+
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCHH
Confidence 468999999999999999998765531 112245789998887777764 455666554321 112222
Q ss_pred HHHHH---HHHHHHcCCcEEEEEeCCCC
Q 000280 244 QRAEK---LRQRLKNVKRVLVILDNIWK 268 (1728)
Q Consensus 244 ~~~~~---l~~~l~~~~~~LlVlDdv~~ 268 (1728)
+.... +.+.+.+.+--|||+|.+..
T Consensus 197 ~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 197 HQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 33222 33334444566888888754
No 300
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.77 E-value=0.12 Score=59.13 Aligned_cols=41 Identities=29% Similarity=0.441 Sum_probs=32.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP 219 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 219 (1728)
-.++.|.|.+|+|||++|.+++..... .=..++|++.....
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~--~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS--RGNPVLFVTVESPA 76 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh--CCCcEEEEEecCCc
Confidence 468999999999999999998876542 23578899887543
No 301
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.74 E-value=0.16 Score=49.54 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=34.3
Q ss_pred cccchHHHHHHHHHHHh----c---CCceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 157 QFDSRMKIFQNIMEVLK----D---TNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 157 ~~~gR~~~~~~l~~~L~----~---~~~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
.++|.+-..+.+++++. + .++-|++.+|..|+|||.+|+.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45666666666666665 2 345689999999999999999999984
No 302
>PRK14974 cell division protein FtsY; Provisional
Probab=94.72 E-value=0.27 Score=57.88 Aligned_cols=91 Identities=21% Similarity=0.198 Sum_probs=51.1
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCC--HHHHHHHHHHHhhhhhcc---CCCHHHHHHHHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD--LQTIQNKLSSDLELEFKQ---NENVFQRAEKLR 250 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 250 (1728)
+..+|+++|+.|+||||.+..++...+.. .+ .++.+.. +.+. ..+-+...+..++.+... ..+....+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 46799999999999999999999877533 23 3444432 2222 223345566666654321 122222222222
Q ss_pred HHHHcCCcEEEEEeCCCCc
Q 000280 251 QRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 251 ~~l~~~~~~LlVlDdv~~~ 269 (1728)
+.......=++++|.+...
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 2222122238899987544
No 303
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.69 E-value=0.18 Score=57.24 Aligned_cols=89 Identities=28% Similarity=0.326 Sum_probs=56.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHH-hhhh-hccCCCHHHH---HHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSD-LELE-FKQNENVFQR---AEKLRQ 251 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~~---~~~l~~ 251 (1728)
-+++=|+|+.|+||||+|.+++-... ..-..++||+....+++..+. +++.. +..- ..+..+.++. +..+.+
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 46888999999999999999887764 334589999999999988764 34444 2211 1112222222 222222
Q ss_pred HHHcCCcEEEEEeCCCCc
Q 000280 252 RLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 252 ~l~~~~~~LlVlDdv~~~ 269 (1728)
... .+--|+|+|.+-..
T Consensus 137 ~~~-~~i~LvVVDSvaa~ 153 (279)
T COG0468 137 SGA-EKIDLLVVDSVAAL 153 (279)
T ss_pred hcc-CCCCEEEEecCccc
Confidence 222 23678999987543
No 304
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.68 E-value=0.04 Score=55.28 Aligned_cols=31 Identities=42% Similarity=0.478 Sum_probs=26.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD 208 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~ 208 (1728)
...|+|.|++|+||||+++.++...+.+. |.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~k 35 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG-YK 35 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC-ce
Confidence 35789999999999999999999987543 54
No 305
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.60 E-value=0.2 Score=58.83 Aligned_cols=90 Identities=19% Similarity=0.230 Sum_probs=55.7
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1728)
+.++++++|+.|+||||++..++.....+ -..+.+|+..... ...+-++..++.++.+.....+..+... ..+.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~-al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEE-AVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHH-HHHHHH
Confidence 35799999999999999999999877433 2356677665332 2234455566666655432334444433 233343
Q ss_pred -cCCcEEEEEeCCCC
Q 000280 255 -NVKRVLVILDNIWK 268 (1728)
Q Consensus 255 -~~~~~LlVlDdv~~ 268 (1728)
.+..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13456788887754
No 306
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.54 E-value=0.21 Score=57.66 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=36.1
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP 219 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 219 (1728)
.-+++.|+|.+|+|||++|.+++...... ...++||+..+.+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~ 63 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESP 63 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCH
Confidence 45799999999999999999999988643 7889999988753
No 307
>PRK04328 hypothetical protein; Provisional
Probab=94.52 E-value=0.14 Score=58.26 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=32.6
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP 219 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 219 (1728)
-.++.|.|.+|+|||+||.+++..... .-+.++|++..+.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~--~ge~~lyis~ee~~ 63 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGVYVALEEHP 63 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh--cCCcEEEEEeeCCH
Confidence 468999999999999999998877532 24668899887643
No 308
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.49 E-value=0.013 Score=38.11 Aligned_cols=20 Identities=20% Similarity=0.537 Sum_probs=10.7
Q ss_pred CceeecCCCCCCccchHhhc
Q 000280 607 LEILSFRNSDIQQLPREIGQ 626 (1728)
Q Consensus 607 L~~L~Ls~~~i~~LP~~i~~ 626 (1728)
|++|||++|+++.+|.++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 45555555555555555443
No 309
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.48 E-value=0.13 Score=61.61 Aligned_cols=85 Identities=15% Similarity=0.190 Sum_probs=46.5
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHc
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT-PDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1728)
..+++++|++|+||||+|.+++........+ .+..++.... ....+.+...++.++.+.... .....+.+.+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~----~~~~~l~~~l~~ 297 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV----KDIKKFKETLAR 297 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeeh----HHHHHHHHHHHh
Confidence 4689999999999999999999865322222 3444443221 112333344445555433211 112344444543
Q ss_pred CCcEEEEEeCC
Q 000280 256 VKRVLVILDNI 266 (1728)
Q Consensus 256 ~~~~LlVlDdv 266 (1728)
...=++|+|-.
T Consensus 298 ~~~D~VLIDTa 308 (432)
T PRK12724 298 DGSELILIDTA 308 (432)
T ss_pred CCCCEEEEeCC
Confidence 34445888843
No 310
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.21 Score=62.27 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=93.1
Q ss_pred cccccchHHH---HHHHHHHHhcCC---------ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHH
Q 000280 155 YEQFDSRMKI---FQNIMEVLKDTN---------VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ 222 (1728)
Q Consensus 155 ~~~~~gR~~~---~~~l~~~L~~~~---------~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (1728)
.....|.++. +.++++.|.++. ++-|.++|++|.|||.||++++....+- | ++.|.. ++.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS-~FV 220 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGS-DFV 220 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccch-hhh
Confidence 3455787755 445666666532 5678999999999999999999987532 2 222221 111
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccCCCccccccc
Q 000280 223 TIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLN----------------LDAVGIPFGDVKKER 286 (1728)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~~~~~~~~~ 286 (1728)
+.+-. -...+++.+...-++.-++++++|.++.... +..+......
T Consensus 221 -------emfVG------vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG----- 282 (596)
T COG0465 221 -------EMFVG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG----- 282 (596)
T ss_pred -------hhhcC------CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc-----
Confidence 11110 1113333444444445689999999876521 1112111111
Q ss_pred CCCCCCeEEEEEeCCchhhcc---cCC-CccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChH
Q 000280 287 NDDRSRCTVLLTSRNRDVLCN---DMN-SQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV 358 (1728)
Q Consensus 287 ~~~~~g~~ilvTtR~~~v~~~---~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 358 (1728)
-..+.|-.|+..|-.++|... ..+ -++.+.++.-+-..-.+.++-++....-.++ .+ ...|++.+-|.-.
T Consensus 283 F~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~-Vd-l~~iAr~tpGfsG 356 (596)
T COG0465 283 FGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED-VD-LKKIARGTPGFSG 356 (596)
T ss_pred CCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc-CC-HHHHhhhCCCccc
Confidence 002234444444444444422 122 2556667766667777777766643222222 11 2237787777653
No 311
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.44 E-value=0.14 Score=57.77 Aligned_cols=92 Identities=25% Similarity=0.234 Sum_probs=60.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHH--hccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhh------ccCCCHHH----
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVI--EDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEF------KQNENVFQ---- 244 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~--~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~---- 244 (1728)
..++|+|-.|+|||+|+.+++++.. .+..-+.++++-+++.. +..++.+++...=.... ...+....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 5789999999999999999988763 12234778999998775 46777776655422110 00122111
Q ss_pred --HHHHHHHHHHc--CCcEEEEEeCCCCc
Q 000280 245 --RAEKLRQRLKN--VKRVLVILDNIWKL 269 (1728)
Q Consensus 245 --~~~~l~~~l~~--~~~~LlVlDdv~~~ 269 (1728)
.+-.+.++++. ++++|+++||+-..
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 22345566652 69999999998654
No 312
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.44 E-value=0.056 Score=59.26 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=30.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCC--------CeeEEEEECCCC
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLF--------DKVVFVEVTQTP 219 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f--------~~~~wv~~~~~~ 219 (1728)
.++.|.|.+|+||||++.+++........| ..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 488999999999999999999988754333 358888877653
No 313
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.21 Score=53.83 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=37.7
Q ss_pred cccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 155 YEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~~-------------~~~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
+..+-|=.+.++++.+...- +..+-|.++|++|.|||-.|++|+++-
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 44566778888888877651 245778999999999999999999976
No 314
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.40 E-value=0.18 Score=54.17 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=47.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhhcc---CCCHHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEFKQ---NENVFQRAEKLRQRLK 254 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l~ 254 (1728)
++.++|++|+||||+++.++...... -..++.++..... ...+.+...+...+.+... ..+..+..........
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999887533 1234555543221 2333344444544433221 2233333323333232
Q ss_pred cCCcEEEEEeCCCC
Q 000280 255 NVKRVLVILDNIWK 268 (1728)
Q Consensus 255 ~~~~~LlVlDdv~~ 268 (1728)
....-++|+|..-.
T Consensus 80 ~~~~d~viiDt~g~ 93 (173)
T cd03115 80 EENFDVVIVDTAGR 93 (173)
T ss_pred hCCCCEEEEECccc
Confidence 23333566887554
No 315
>PRK06547 hypothetical protein; Provisional
Probab=94.40 E-value=0.056 Score=57.35 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=28.7
Q ss_pred HHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 167 NIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 167 ~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
.+...+......+|+|.|..|+||||+|+.+++..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444556678899999999999999999999874
No 316
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.7 Score=57.27 Aligned_cols=176 Identities=18% Similarity=0.174 Sum_probs=97.2
Q ss_pred ccccchHHHHHHHHHHHhc----------CC---ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHH
Q 000280 156 EQFDSRMKIFQNIMEVLKD----------TN---VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ 222 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~----------~~---~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (1728)
+.+-|..+..+.+.+.+.- .. ..-|.++|++|+|||-||.+++..... -+|+|-.+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-------~fisvKGP---- 735 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-------RFISVKGP---- 735 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-------eEEEecCH----
Confidence 4455666666666666651 12 246889999999999999999987642 25666554
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCcc-------------ccccccCCCcccccccCCC
Q 000280 223 TIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKLL-------------NLDAVGIPFGDVKKERNDD 289 (1728)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~~~~~~ 289 (1728)
+++...- ...++.++.++.+-+.-+++++.||..++.. -++.+...+... .+
T Consensus 736 ----ElL~KyI------GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~-----Eg 800 (952)
T KOG0735|consen 736 ----ELLSKYI------GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGA-----EG 800 (952)
T ss_pred ----HHHHHHh------cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccc-----cc
Confidence 1222211 1223556677777777799999999987651 122232222210 02
Q ss_pred CCCeEEEE-EeCCchhhcc--cCCC-ccEEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHH
Q 000280 290 RSRCTVLL-TSRNRDVLCN--DMNS-QKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 359 (1728)
Q Consensus 290 ~~g~~ilv-TtR~~~v~~~--~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 359 (1728)
-.|.-|+- |||..-+-.+ ..|. ++.+.=+.-++.|-.+.|+..+..-.... ....+.++.+.+|..-|
T Consensus 801 l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~--~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 801 LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT--DVDLECLAQKTDGFTGA 872 (952)
T ss_pred cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc--ccchHHHhhhcCCCchh
Confidence 24555554 5565533222 1222 33444445566667777777663211110 11244566777776543
No 317
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.32 E-value=0.094 Score=59.12 Aligned_cols=89 Identities=20% Similarity=0.394 Sum_probs=56.6
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhcc------------------
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ------------------ 238 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------------ 238 (1728)
-.++.|.|.+|+|||++|.+++.....+ .=+.++||+..+++ .++.+.+. .++.+..+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 4699999999999999999988765322 13568888876643 44444332 33321110
Q ss_pred --CCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 239 --NENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 239 --~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
..+..+....+.+.+++.+...+|+|.+...
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 2356666777777776556689999986544
No 318
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.32 E-value=0.17 Score=57.39 Aligned_cols=86 Identities=16% Similarity=0.277 Sum_probs=55.9
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhcc------------------
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ------------------ 238 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------------ 238 (1728)
-.++.|+|.+|+|||++|.+++..... .=..++|++..+. ..++.+++ .+++....+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccc
Confidence 468999999999999999999776532 2457889988654 34454443 333322110
Q ss_pred --CCCHHHHHHHHHHHHHcCCcEEEEEeCCC
Q 000280 239 --NENVFQRAEKLRQRLKNVKRVLVILDNIW 267 (1728)
Q Consensus 239 --~~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 267 (1728)
.....+....+.+.+.+.+.-++|+|.+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 11234555666666654466689999976
No 319
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.31 E-value=0.21 Score=56.07 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=33.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKL 228 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (1728)
-.++.|.|..|+||||+|.+++.....+ -..++|++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCCC--CHHHHHHHH
Confidence 3599999999999999998877765322 24567777433 445555555
No 320
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.11 Score=60.32 Aligned_cols=98 Identities=28% Similarity=0.329 Sum_probs=63.7
Q ss_pred HHHHHHHhcC--CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhcc-CCCH
Q 000280 166 QNIMEVLKDT--NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ-NENV 242 (1728)
Q Consensus 166 ~~l~~~L~~~--~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~ 242 (1728)
.++-+.|... .-.+|.|-|-+|+|||||..+++.+...+. .++||+-.+. ..++ +--+++++...+. .--.
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~a 153 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLA 153 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEeh
Confidence 3444445432 235899999999999999999999996443 7888865543 3332 2345666643321 0112
Q ss_pred HHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 243 FQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 243 ~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
+...+.+.+.+.+.+.-++|+|-+...
T Consensus 154 Et~~e~I~~~l~~~~p~lvVIDSIQT~ 180 (456)
T COG1066 154 ETNLEDIIAELEQEKPDLVVIDSIQTL 180 (456)
T ss_pred hcCHHHHHHHHHhcCCCEEEEecccee
Confidence 233455667776679999999998654
No 321
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.27 E-value=0.36 Score=58.86 Aligned_cols=91 Identities=19% Similarity=0.157 Sum_probs=49.4
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhhcc---CCCHHHHHHHHHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEFKQ---NENVFQRAEKLRQ 251 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 251 (1728)
...++.++|.+|+||||.|..++.....+.. ..++.|+..... ...+-++..+...+.+... ..+..+.+....+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 3679999999999999999999988642221 234455443211 1223333445555443221 2233344444444
Q ss_pred HHHcCCcEEEEEeCCC
Q 000280 252 RLKNVKRVLVILDNIW 267 (1728)
Q Consensus 252 ~l~~~~~~LlVlDdv~ 267 (1728)
.......=++|+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4432222377777654
No 322
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.27 E-value=0.17 Score=55.52 Aligned_cols=87 Identities=28% Similarity=0.406 Sum_probs=56.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhh------ccCCCHHH------
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEF------KQNENVFQ------ 244 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~------ 244 (1728)
..++|.|.+|+|||+|+.++++... -+.++++-+++.. ++.++.+++...-.... ...+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5889999999999999999999873 4556888888764 46666666644311110 01222111
Q ss_pred HHHHHHHHHH-cCCcEEEEEeCCCC
Q 000280 245 RAEKLRQRLK-NVKRVLVILDNIWK 268 (1728)
Q Consensus 245 ~~~~l~~~l~-~~~~~LlVlDdv~~ 268 (1728)
.+-.+.+++. +++++|+|+||+..
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHH
Confidence 1123334443 47999999999744
No 323
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.18 E-value=0.31 Score=59.80 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=49.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCC-HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcC
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD-LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1728)
++++++|++|+||||++..++........-..+..|+...... ..+-+...++.++.+.....+..+....+. .+.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~-~~~-- 298 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALE-QLR-- 298 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHH-HhC--
Confidence 5899999999999999999988774112234567776543211 112233334445544432233333333332 232
Q ss_pred CcEEEEEeCCC
Q 000280 257 KRVLVILDNIW 267 (1728)
Q Consensus 257 ~~~LlVlDdv~ 267 (1728)
..=+||+|..-
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 45678889763
No 324
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.18 E-value=2.2 Score=50.54 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=54.2
Q ss_pred HHHHHHHHhcC----CceEEEEEcCCcchHHH-HHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhhcc
Q 000280 165 FQNIMEVLKDT----NVGMIGVYGVNGVGKTT-LVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEFKQ 238 (1728)
Q Consensus 165 ~~~l~~~L~~~----~~~~i~I~G~gG~GKTt-La~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~ 238 (1728)
...+..++.+. +-++|+++|+.|||||| ||+.+++..... .=..|..|+...-. ...+=++.-++-++.+...
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~-~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLK-KKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhc-cCcceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 33444444433 36899999999999994 566555554222 23456666654321 2334445566777777664
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEeCCC
Q 000280 239 NENVFQRAEKLRQRLKNVKRVLVILDNIW 267 (1728)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 267 (1728)
..+..+....+. .++ +. =+|.+|-+.
T Consensus 266 v~~~~el~~ai~-~l~-~~-d~ILVDTaG 291 (407)
T COG1419 266 VYSPKELAEAIE-ALR-DC-DVILVDTAG 291 (407)
T ss_pred ecCHHHHHHHHH-Hhh-cC-CEEEEeCCC
Confidence 445555444332 232 22 344456543
No 325
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.18 E-value=0.061 Score=66.00 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=41.2
Q ss_pred ccccchHHHHHHHHHHHh------cCCceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLK------DTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~------~~~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
..++|.++.+++|++.|. +..-+++.++|++|+||||||+.+++-.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 357899999999999994 44567999999999999999999999775
No 326
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.39 Score=55.26 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=33.8
Q ss_pred cccchHHHHHHHHHHHh----c----------CCceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 157 QFDSRMKIFQNIMEVLK----D----------TNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 157 ~~~gR~~~~~~l~~~L~----~----------~~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
.+-|-+..++++.+... . ...+-|.++|++|.|||-+|++++++..
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag 152 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG 152 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC
Confidence 34566666666655543 0 1356788999999999999999999873
No 327
>PRK07667 uridine kinase; Provisional
Probab=94.11 E-value=0.075 Score=58.00 Aligned_cols=39 Identities=23% Similarity=0.463 Sum_probs=30.5
Q ss_pred HHHHHHHHh--cCCceEEEEEcCCcchHHHHHHHHHHHHHh
Q 000280 165 FQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1728)
Q Consensus 165 ~~~l~~~L~--~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~ 203 (1728)
++.+.+.+. .+...+|+|.|.+|+||||+|+.++.....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345555655 344579999999999999999999998753
No 328
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.10 E-value=0.065 Score=65.04 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=38.7
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
..|+||++.++.+...+..+ ..|.|.|++|+|||++|+.++....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhc
Confidence 35889999999998888654 4789999999999999999998764
No 329
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.09 E-value=0.28 Score=56.42 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=50.1
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCH--HHHHHHHHHHhhhhhc---cCCCHHHHH-HHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDL--QTIQNKLSSDLELEFK---QNENVFQRA-EKL 249 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~~~-~~l 249 (1728)
+.++|+++|++|+||||.+..++...+.. -..+++++... +.. .+-+...+...+.... ...+..... ..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 45799999999999999999999887532 23566665442 222 2223334555554321 112222222 223
Q ss_pred HHHHHcCCcEEEEEeCCCC
Q 000280 250 RQRLKNVKRVLVILDNIWK 268 (1728)
Q Consensus 250 ~~~l~~~~~~LlVlDdv~~ 268 (1728)
..... ...=++|+|-.-.
T Consensus 148 ~~~~~-~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKA-RNIDVVLIDTAGR 165 (272)
T ss_pred HHHHH-CCCCEEEEeCCCC
Confidence 22222 3455788887643
No 330
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.06 E-value=0.072 Score=52.48 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=40.7
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHc
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1728)
.+-|.|.|.+|+||||+|.+++.... .-|+++++-..-..++...-....-. .-+++...+.+-..+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~vkEn~l~~gyDE~y~c~---i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLVKENNLYEGYDEEYKCH---ILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHHhhhcchhcccccccCc---cccHHHHHHHHHHHHhc
Confidence 35789999999999999999996542 34777765433333322111111110 22455566666666653
No 331
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.06 E-value=0.03 Score=61.07 Aligned_cols=81 Identities=27% Similarity=0.371 Sum_probs=41.1
Q ss_pred CCCcccEEEecCcc--CC--CccccccccCCceeecCCCCCCccc--hHhhccccccEEeccCcccccccC---cccccc
Q 000280 581 CLISLRTLSLEGCQ--VG--DVAIVGQLKKLEILSFRNSDIQQLP--REIGQLVQLRLLDLRNCRRLQAIA---PNVISK 651 (1728)
Q Consensus 581 ~L~~Lr~L~L~~~~--i~--~~~~i~~L~~L~~L~Ls~~~i~~LP--~~i~~L~~L~~L~L~~~~~l~~lp---~~~i~~ 651 (1728)
.|.+|++|.++.|. +. .+....++.+|++|++++|.|+.+- ....+|.+|..|++.+|. ...+- ..++.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~-~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS-VTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC-ccccccHHHHHHHH
Confidence 45566666666662 22 1222333466666666666554311 124556666666666663 22221 223556
Q ss_pred CcccceeccCC
Q 000280 652 LSRLEELYMGD 662 (1728)
Q Consensus 652 L~~L~~L~l~~ 662 (1728)
|++|.+|+...
T Consensus 142 l~~L~~LD~~d 152 (260)
T KOG2739|consen 142 LPSLKYLDGCD 152 (260)
T ss_pred hhhhccccccc
Confidence 77777776543
No 332
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.05 E-value=0.034 Score=61.57 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.6
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQ 200 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~ 200 (1728)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 489999999999999999999854
No 333
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.03 E-value=0.13 Score=55.82 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999876
No 334
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.00 E-value=0.048 Score=71.85 Aligned_cols=194 Identities=16% Similarity=0.167 Sum_probs=93.8
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHH-HhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhcc---CCCHHHHHHHHHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQV-IEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ---NENVFQRAEKLRQ 251 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 251 (1728)
+.++++|+|+.|.||||+.+.+.... ..... .+|.+.....+ ..+.++...++....- ..........+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 45799999999999999999998762 11111 11111111000 0011111111110000 0001111122222
Q ss_pred HHH-cCCcEEEEEeCCCCccccc---cccCCCcccccccCCCCCCeEEEEEeCCchhhcccCCCc--cEEEccCCCHHHH
Q 000280 252 RLK-NVKRVLVILDNIWKLLNLD---AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQ--KFFLIEVLSYEEA 325 (1728)
Q Consensus 252 ~l~-~~~~~LlVlDdv~~~~~~~---~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~~~~~~--~~~~l~~L~~~ea 325 (1728)
.+. ...+-|+++|+.....+.. .+...+- ..+ ...|+.+|+||....+........ ....+. ++.+.-
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiL---e~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~~l 469 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISIL---EYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDEETL 469 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHH---HHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCCCC
Confidence 232 1478999999987764322 1211110 001 235788999999987644211111 111111 111100
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHHhcCCchhHHHHHHHHhccc
Q 000280 326 WCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWNDSLERLRNST 386 (1728)
Q Consensus 326 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~~L~~~~~~~w~~~~~~l~~~~ 386 (1728)
.-.++-..|... ...|-+|++++ |+|-.|.--|..+......+++++++.|....
T Consensus 470 ~p~Ykl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~ 524 (771)
T TIGR01069 470 SPTYKLLKGIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSALE 524 (771)
T ss_pred ceEEEECCCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 000111112111 24477888877 88998888888877665556788887776543
No 335
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.97 E-value=0.043 Score=55.52 Aligned_cols=22 Identities=45% Similarity=0.838 Sum_probs=20.6
Q ss_pred EEEEcCCcchHHHHHHHHHHHH
Q 000280 180 IGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 180 i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
|+|.|..|+||||+|+++.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999984
No 336
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.96 E-value=0.1 Score=56.05 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=36.0
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhc
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFK 237 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 237 (1728)
.|+|+|-||+||||+|...+.+...++- ..+.-|+...++++ ..+||...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~-~~VLvVDaDpd~nL-------~~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGG-YNVLVVDADPDSNL-------PEALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCCh-------HHhcCCCCC
Confidence 6899999999999999997777754433 34555666666554 345565543
No 337
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.84 E-value=0.11 Score=57.33 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=38.4
Q ss_pred HHHHHHHHHh--cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHH
Q 000280 164 IFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ 222 (1728)
Q Consensus 164 ~~~~l~~~L~--~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 222 (1728)
...++++.+. ..+..+|+|.|++|+|||||+-++...++.+.+=-.|+=|+-+.+++--
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGG 74 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGG 74 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC--
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCC
Confidence 3445566655 3467899999999999999999999999765443445556555555533
No 338
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.82 E-value=0.27 Score=60.19 Aligned_cols=91 Identities=23% Similarity=0.401 Sum_probs=61.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhh------ccCCCHHH------
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEF------KQNENVFQ------ 244 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~------ 244 (1728)
..++|+|.+|+|||||+.++++..... +-+.++++-+++.. .+.++..++...-.... ..++....
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 589999999999999999999888533 56888888887665 46666666654321110 00122211
Q ss_pred HHHHHHHHHH-c-CCcEEEEEeCCCCc
Q 000280 245 RAEKLRQRLK-N-VKRVLVILDNIWKL 269 (1728)
Q Consensus 245 ~~~~l~~~l~-~-~~~~LlVlDdv~~~ 269 (1728)
.+..+.++++ + ++++|+++|++-..
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccchHH
Confidence 2334556664 2 79999999998543
No 339
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.79 E-value=0.23 Score=54.16 Aligned_cols=85 Identities=16% Similarity=0.285 Sum_probs=50.3
Q ss_pred EEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhcc----------CC-----CHH-
Q 000280 180 IGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ----------NE-----NVF- 243 (1728)
Q Consensus 180 i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------~~-----~~~- 243 (1728)
+.|.|.+|+|||++|.+++...... =..++|++.... ..++.+. +.+++..... .. ...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~--~~~~~~~-~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~ 76 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEES--PEELIEN-AESLGWDLERLEDEGLLAIVDADPDEIGPAE 76 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC--HHHHHHH-HHHcCCChHHHHhcCCeEEEecCccccchhh
Confidence 6799999999999999998876422 356788876553 4444333 2233322110 00 000
Q ss_pred -----HHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 244 -----QRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 244 -----~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
+....+.+.....+.-++|+|.+...
T Consensus 77 ~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~ 107 (187)
T cd01124 77 SSLRLELIQRLKDAIEEFKAKRVVIDSVSGL 107 (187)
T ss_pred hhhhHHHHHHHHHHHHHhCCCEEEEeCcHHH
Confidence 12344444444457779999997644
No 340
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.79 E-value=0.091 Score=55.75 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=33.2
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLS 229 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (1728)
..+|+|-||-|+||||||+.++++.... +++-.+.+++=+.....++-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~~ 51 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDPE 51 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhHH
Confidence 4689999999999999999999988421 23334445544444444443
No 341
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.76 E-value=0.11 Score=57.84 Aligned_cols=60 Identities=25% Similarity=0.352 Sum_probs=45.1
Q ss_pred HHHHHHHh--cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHH
Q 000280 166 QNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQ 225 (1728)
Q Consensus 166 ~~l~~~L~--~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 225 (1728)
.+++..+. ..+..+|+|.|.+|+|||||.-++....+.+.+=-.|+=|+-+.+++--.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 34555555 4567899999999999999999999999776665566777777777544443
No 342
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.76 E-value=0.13 Score=63.00 Aligned_cols=91 Identities=24% Similarity=0.277 Sum_probs=53.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCee-EEEEECCCCC-HHHHHHHHHHHhhhh-hccCC----CHHHHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKV-VFVEVTQTPD-LQTIQNKLSSDLELE-FKQNE----NVFQRAEKLR 250 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~-~wv~~~~~~~-~~~~~~~i~~~l~~~-~~~~~----~~~~~~~~l~ 250 (1728)
..+.|+|.+|+|||||++.+++.... .+-+.. +++-|.+.+. +.++.+.+-..+-.. .+... .....+-.+.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A 495 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA 495 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999997743 344443 3555666553 444443331111111 11011 1122233444
Q ss_pred HHHH-cCCcEEEEEeCCCCc
Q 000280 251 QRLK-NVKRVLVILDNIWKL 269 (1728)
Q Consensus 251 ~~l~-~~~~~LlVlDdv~~~ 269 (1728)
+++. +++.+||++|++-..
T Consensus 496 e~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 496 KRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHcCCCEEEEEeCchHH
Confidence 5553 579999999998644
No 343
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.73 E-value=0.08 Score=55.17 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=23.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhc
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~ 204 (1728)
+.|.+.|.+|+||||+|+++++..+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467889999999999999999988643
No 344
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.70 E-value=0.031 Score=57.29 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=31.4
Q ss_pred cchHHHHHHHHHHHh--cCCceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 159 DSRMKIFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 159 ~gR~~~~~~l~~~L~--~~~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
+|+...+.++.+.+. ......|.|+|..|+||+++|+.++....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 355566677766665 23446789999999999999998888653
No 345
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.69 E-value=0.17 Score=60.85 Aligned_cols=87 Identities=24% Similarity=0.290 Sum_probs=53.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCC-CHHHHHHHHHHHHHc
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNE-NVFQRAEKLRQRLKN 255 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 255 (1728)
-.++.|.|.+|+|||||+.+++...... -..++|++..+. ..++ ..-+++++...+... ........+.+.+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 3689999999999999999999877532 356888876543 3333 222445554322100 001123344555554
Q ss_pred CCcEEEEEeCCCC
Q 000280 256 VKRVLVILDNIWK 268 (1728)
Q Consensus 256 ~~~~LlVlDdv~~ 268 (1728)
.+.-++|+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 5777899999854
No 346
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.64 E-value=0.19 Score=60.90 Aligned_cols=91 Identities=21% Similarity=0.388 Sum_probs=61.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhh------ccCCCHHH------
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEF------KQNENVFQ------ 244 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~------ 244 (1728)
..++|.|.+|+|||+|+.++++... +.+-+.++|+-+++.. .+.++.+++...=.... ..++....
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 5889999999999999999988864 2345788899888765 46666666654321110 00122211
Q ss_pred HHHHHHHHHH--cCCcEEEEEeCCCCc
Q 000280 245 RAEKLRQRLK--NVKRVLVILDNIWKL 269 (1728)
Q Consensus 245 ~~~~l~~~l~--~~~~~LlVlDdv~~~ 269 (1728)
.+-.+.++++ +++++|+++||+-..
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHHH
Confidence 2345566665 379999999998654
No 347
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.63 E-value=0.18 Score=54.38 Aligned_cols=119 Identities=16% Similarity=0.173 Sum_probs=63.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECC--CCCHHHHHH------HHHHHhhhhhcc-----CCC-HH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ--TPDLQTIQN------KLSSDLELEFKQ-----NEN-VF 243 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~------~i~~~l~~~~~~-----~~~-~~ 243 (1728)
.+++|.|..|.|||||++.++.... ...+.+++.-.. ..+...... ++++.++..... .-+ -+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 5899999999999999999988652 345555543111 112222211 134444432110 111 12
Q ss_pred HHHHHHHHHHHcCCcEEEEEeCCCCcccc---ccccCCCcccccccCCCCCCeEEEEEeCCchhh
Q 000280 244 QRAEKLRQRLKNVKRVLVILDNIWKLLNL---DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL 305 (1728)
Q Consensus 244 ~~~~~l~~~l~~~~~~LlVlDdv~~~~~~---~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~ 305 (1728)
...-.+.+.+. ..+-++++|+--...|. +.+...+.. .. ...+..||++|.+....
T Consensus 103 ~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~----~~-~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRR----LA-RERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHH----HH-HhcCCEEEEEeCCHHHH
Confidence 22233455555 47889999997665332 222111211 00 11256788888876654
No 348
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.63 E-value=0.25 Score=56.89 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=30.6
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCC
Q 000280 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1728)
Q Consensus 175 ~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 220 (1728)
....+|||.|..|+||||+|+.+.........-..+..++......
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 4567999999999999999998877663111112355555554443
No 349
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.63 E-value=0.17 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=21.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999874
No 350
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.63 E-value=6.9 Score=46.69 Aligned_cols=88 Identities=20% Similarity=0.219 Sum_probs=51.0
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCC--HHHHHHHHHHHhhhhhccC---CCHHHHHHHHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD--LQTIQNKLSSDLELEFKQN---ENVFQRAEKLR 250 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~ 250 (1728)
.+.+|-.+|.-|.||||-|..+++..+. +...+-+...+.+. .-+=++.++.+.+.+.... .+..+.+..-.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al 175 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK---KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAAL 175 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH---cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHH
Confidence 3578999999999999999999999964 22222233333333 3334567777777654422 23333433333
Q ss_pred HHHHcCCcEEEEEeCC
Q 000280 251 QRLKNVKRVLVILDNI 266 (1728)
Q Consensus 251 ~~l~~~~~~LlVlDdv 266 (1728)
++.+....=++|+|-.
T Consensus 176 ~~ak~~~~DvvIvDTA 191 (451)
T COG0541 176 EKAKEEGYDVVIVDTA 191 (451)
T ss_pred HHHHHcCCCEEEEeCC
Confidence 3443223334455543
No 351
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.63 E-value=0.21 Score=64.66 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=60.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhc-----cCCCHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFK-----QNENVFQRAEKLRQ 251 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 251 (1728)
-+++-|+|.+|+||||||.+++..... .=..++||+..+.++. ..+++++.+.+ .....+.....+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~--~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQA--AGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 468889999999999999987776542 2356899988877774 36677776533 13344455555555
Q ss_pred HHHcCCcEEEEEeCCCCc
Q 000280 252 RLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 252 ~l~~~~~~LlVlDdv~~~ 269 (1728)
.+.+++--|||+|.+...
T Consensus 133 lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 133 LIRSGALDIVVIDSVAAL 150 (790)
T ss_pred HhhcCCCeEEEEcchhhh
Confidence 555557779999998643
No 352
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.59 E-value=0.13 Score=53.27 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=24.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHh
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~ 203 (1728)
-.++.|+|+.|.||||+.+.+|...+.
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 358999999999999999999998754
No 353
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.56 E-value=0.15 Score=52.39 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=45.5
Q ss_pred EEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCCcE
Q 000280 180 IGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVKRV 259 (1728)
Q Consensus 180 i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 259 (1728)
|.++|.+|+|||+||+.+++... ..+.-+.++...+..++....--. ..... ... ..+.+.+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~--~~~----~~l~~a~--~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPS-NGQFE--FKD----GPLVRAM--RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET--TTTTC--EEE-----CCCTTH--HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeec-ccccc--ccc----ccccccc--ccee
Confidence 67999999999999999999872 234556778877877765322211 00000 000 0011111 1789
Q ss_pred EEEEeCCCCc
Q 000280 260 LVILDNIWKL 269 (1728)
Q Consensus 260 LlVlDdv~~~ 269 (1728)
++|||++...
T Consensus 68 il~lDEin~a 77 (139)
T PF07728_consen 68 ILVLDEINRA 77 (139)
T ss_dssp EEEESSCGG-
T ss_pred EEEECCcccC
Confidence 9999999743
No 354
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.53 E-value=4.9 Score=47.34 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=33.7
Q ss_pred EEEccCCCHHHHHHHHHHHhCCC--CCCCchHHHHHHHHHHhCCChHHH
Q 000280 314 FFLIEVLSYEEAWCLFEKIVGDS--AKASDFRVIADEIVRRCGGLPVAI 360 (1728)
Q Consensus 314 ~~~l~~L~~~ea~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~glPLai 360 (1728)
++++++++.+|+..++..+.... ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999998887321 111334555667777779999643
No 355
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.51 E-value=0.084 Score=60.23 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=68.7
Q ss_pred HHHHHHHHh-cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEE---ECCCCCHHHHHHHHHHHhhh-hhcc-
Q 000280 165 FQNIMEVLK-DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVE---VTQTPDLQTIQNKLSSDLEL-EFKQ- 238 (1728)
Q Consensus 165 ~~~l~~~L~-~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~~-~~~~- 238 (1728)
.+.++..+. +.....++|+|..|+||||+.+.++.... ...+.+++. +....+.. +++..... ....
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~~ 170 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIVDERS----EIAGCVNGVPQHDV 170 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecchhHH----HHHHHhcccccccc
Confidence 334444444 34457899999999999999999998763 233444442 11111122 33322211 1000
Q ss_pred -----CCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCcccccccCCCCCCeEEEEEeCCchhh
Q 000280 239 -----NENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL 305 (1728)
Q Consensus 239 -----~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~ 305 (1728)
.-+....+..+...+....+-++|+|.+...+.+..+... ...|..||+||.+..+.
T Consensus 171 ~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~----------~~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 171 GIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEA----------LHAGVSIIATAHGRDVE 232 (270)
T ss_pred cccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHH----------HhCCCEEEEEechhHHH
Confidence 0011112333444444357889999999776655554322 12467899999876553
No 356
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.50 E-value=0.22 Score=52.55 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=48.9
Q ss_pred EEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcC-Cc
Q 000280 180 IGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV-KR 258 (1728)
Q Consensus 180 i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~ 258 (1728)
+.|.|..|+|||++|.+++.. ....++|+.-.+..+. ++.+.|..--... +......+....+.+.+.+. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRR-PAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCCC
Confidence 679999999999999999865 2346778877766654 3444444422222 11222223334455555322 33
Q ss_pred EEEEEeCCCC
Q 000280 259 VLVILDNIWK 268 (1728)
Q Consensus 259 ~LlVlDdv~~ 268 (1728)
-.+++|.+..
T Consensus 75 ~~VLIDclt~ 84 (169)
T cd00544 75 DVVLIDCLTL 84 (169)
T ss_pred CEEEEEcHhH
Confidence 4799998643
No 357
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.50 E-value=0.16 Score=53.68 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=60.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC--CCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHc
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT--PDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1728)
.+++|.|..|+|||||.+.++.... ...+.+++.-... .+..+. .....+.-.. -..-+...-.+.+.+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~q-LS~G~~qrl~laral~- 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDA---RRAGIAMVYQ-LSVGERQMVEIARALA- 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHH---HhcCeEEEEe-cCHHHHHHHHHHHHHh-
Confidence 5899999999999999999987652 3455565532111 111111 1111111111 1111222233445555
Q ss_pred CCcEEEEEeCCCCccccc---cccCCCcccccccCCCCCCeEEEEEeCCchhh
Q 000280 256 VKRVLVILDNIWKLLNLD---AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL 305 (1728)
Q Consensus 256 ~~~~LlVlDdv~~~~~~~---~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~ 305 (1728)
.++-++++|+.-...|.+ .+...+.. . ...|..||++|.+....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~----~--~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRR----L--RAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHH----H--HHCCCEEEEEeCCHHHH
Confidence 477888999976654322 22111211 0 12356788888887643
No 358
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.47 E-value=0.22 Score=51.49 Aligned_cols=116 Identities=24% Similarity=0.259 Sum_probs=61.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECC---CCCHHHHHHHHH----HHhhhh--hccCCCHHH----
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ---TPDLQTIQNKLS----SDLELE--FKQNENVFQ---- 244 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~----~~l~~~--~~~~~~~~~---- 244 (1728)
..|-|++..|.||||+|...+-+.... .+ .+.+|-.-. ......+++.+- .+.+.. .. ..+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~-~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH-GY-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWT-TENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccC-CCChHHHHHH
Confidence 478899999999999999999887533 22 344433322 223333333320 000100 00 011111
Q ss_pred ---HHHHHHHHHHcCCcEEEEEeCCCCcccc-----ccccCCCcccccccCCCCCCeEEEEEeCCch
Q 000280 245 ---RAEKLRQRLKNVKRVLVILDNIWKLLNL-----DAVGIPFGDVKKERNDDRSRCTVLLTSRNRD 303 (1728)
Q Consensus 245 ---~~~~l~~~l~~~~~~LlVlDdv~~~~~~-----~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~ 303 (1728)
..+..++.+..+.-=|+|||++-....+ +.+...+.. ...+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-------rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-------KPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-------CCCCCEEEEECCCCC
Confidence 1122333444445569999998655222 222222222 445678999999864
No 359
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.46 E-value=0.23 Score=53.37 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=24.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHh
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~ 203 (1728)
..+|+|.|++|+||||+|++++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999998853
No 360
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.46 E-value=0.4 Score=58.45 Aligned_cols=91 Identities=23% Similarity=0.408 Sum_probs=60.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhh------ccCCCHHH------
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEF------KQNENVFQ------ 244 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~------ 244 (1728)
..++|+|..|+|||||+.+++....... -+.++++-+++.. .+.++.+++...=.... ..+.....
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 5889999999999999999988875332 3567888887765 46777776665322110 00122221
Q ss_pred HHHHHHHHHH--cCCcEEEEEeCCCCc
Q 000280 245 RAEKLRQRLK--NVKRVLVILDNIWKL 269 (1728)
Q Consensus 245 ~~~~l~~~l~--~~~~~LlVlDdv~~~ 269 (1728)
.+-.+.++++ +++++||++|++-..
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHHH
Confidence 2334556663 479999999998654
No 361
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.21 Score=57.29 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=27.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ 217 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 217 (1728)
=+-|..+|++|.|||-||++||.... +-|++|+.
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~-------tTFFNVSs 278 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECG-------TTFFNVSS 278 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhc-------CeEEEech
Confidence 35788999999999999999999874 33556654
No 362
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.42 E-value=0.13 Score=68.14 Aligned_cols=186 Identities=18% Similarity=0.255 Sum_probs=95.8
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHH--hcc------------CCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCC
Q 000280 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVI--EDK------------LFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNE 240 (1728)
Q Consensus 175 ~~~~~i~I~G~gG~GKTtLa~~~~~~~~--~~~------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 240 (1728)
.+.+++.|+|+.+.||||+.+.++--.- .-. .|+ .++..++...++..-...+...+
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~~m-------- 395 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSGHM-------- 395 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHHHH--------
Confidence 3457899999999999999999865421 111 111 12333333322222211111111
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCCCccccc---cccCCCcccccccCCCCCCeEEEEEeCCchhhcccCCCc--cEE
Q 000280 241 NVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLD---AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQ--KFF 315 (1728)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~---~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~~~~~~--~~~ 315 (1728)
.....+.+.+ ..+-|+++|......+.. .+...+- ..+ ...|+.+|+||....+........ ...
T Consensus 396 ---~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~ail---e~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~ 465 (782)
T PRK00409 396 ---TNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISIL---EYL--RKRGAKIIATTHYKELKALMYNREGVENA 465 (782)
T ss_pred ---HHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHH---HHH--HHCCCEEEEECChHHHHHHHhcCCCeEEE
Confidence 1112222222 377899999987664422 2211100 001 235789999999987765311111 111
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHHhcCCchhHHHHHHHHhccc
Q 000280 316 LIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWNDSLERLRNST 386 (1728)
Q Consensus 316 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~a~~L~~~~~~~w~~~~~~l~~~~ 386 (1728)
.+. ++.+.-.-.++-..|... ...|-+|++++ |+|-.|.--|..+.......++++++.+....
T Consensus 466 ~~~-~d~~~l~~~Ykl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~ 529 (782)
T PRK00409 466 SVE-FDEETLRPTYRLLIGIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEELE 529 (782)
T ss_pred EEE-EecCcCcEEEEEeeCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 221 111110001111113211 34477888887 88998888888876666556788887776543
No 363
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.40 E-value=0.27 Score=51.20 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=22.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
..+.|.|+.|+|||||++++..+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999875
No 364
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.38 E-value=0.21 Score=55.62 Aligned_cols=99 Identities=22% Similarity=0.275 Sum_probs=59.4
Q ss_pred cccchHHHHHHHHHHHh----c---CCceEEEEEcCCcchHHHHHHHHHHHHHhccC-CCee-EEEEECCCCCHHHHHHH
Q 000280 157 QFDSRMKIFQNIMEVLK----D---TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKL-FDKV-VFVEVTQTPDLQTIQNK 227 (1728)
Q Consensus 157 ~~~gR~~~~~~l~~~L~----~---~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~-f~~~-~wv~~~~~~~~~~~~~~ 227 (1728)
..+|..-..+.++.++. + .++-+++.+|..|+||.-+|+.+++....... =+.| .|+..-+-+....+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i--- 159 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI--- 159 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHH---
Confidence 35676666666666665 2 24569999999999999999999997743211 0111 11111111221111
Q ss_pred HHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 228 LSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
+...+++...++...+.-+|-|+|||+|+..
T Consensus 160 -----------e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 160 -----------EDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred -----------HHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1122334445555555569999999999876
No 365
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.37 E-value=0.14 Score=56.78 Aligned_cols=122 Identities=18% Similarity=0.157 Sum_probs=70.9
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECC-----CCCHHHHHHHHHHHhhhhhcc------CCCHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ-----TPDLQTIQNKLSSDLELEFKQ------NENVFQR 245 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~------~~~~~~~ 245 (1728)
-.+++|+|..|+||||+|+.+..-... -.+.+++.-.+ .....+-..+++...+...+- +-+-.++
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 368999999999999999999987632 23444443221 112334455566665543210 1111222
Q ss_pred HH-HHHHHHHcCCcEEEEEeCCCCcccc---ccccCCCcccccccCCCCCCeEEEEEeCCchhhcc
Q 000280 246 AE-KLRQRLKNVKRVLVILDNIWKLLNL---DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN 307 (1728)
Q Consensus 246 ~~-~l~~~l~~~~~~LlVlDdv~~~~~~---~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~ 307 (1728)
+. .+.+.|. -++-++|.|..-+..|. ..+...+.++ ....|...++.|.+-.+++.
T Consensus 116 QRi~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~dl-----q~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 116 QRIGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLKDL-----QEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhHHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHHHH-----HHHhCCeEEEEEEEHHhhhh
Confidence 22 3445554 68999999997666443 1121112111 13456778999999888874
No 366
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.37 E-value=0.3 Score=54.42 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=28.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP 219 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 219 (1728)
+|+|.|..|+||||+|+.++........=..+..++...-.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 58999999999999999999887531111235556555444
No 367
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.37 E-value=0.14 Score=65.58 Aligned_cols=81 Identities=12% Similarity=0.116 Sum_probs=61.7
Q ss_pred cCccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHH
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSD 231 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 231 (1728)
+.....++|.++.++.|..++... +.+.++|.+|+||||+|+.+++... ..+++.++|+.- ...+..++++.++.+
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHHHh
Confidence 345667899999998888877655 4789999999999999999998763 334677788654 444677888888877
Q ss_pred hhhhh
Q 000280 232 LELEF 236 (1728)
Q Consensus 232 l~~~~ 236 (1728)
+|...
T Consensus 103 ~G~~~ 107 (637)
T PRK13765 103 KGKQI 107 (637)
T ss_pred cCHHH
Confidence 76543
No 368
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.36 E-value=0.041 Score=35.73 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=16.0
Q ss_pred cceEEEecCcCccccCccccCC
Q 000280 561 ELRVVHFTRTCFLSLPSSLVCL 582 (1728)
Q Consensus 561 ~Lr~L~Ls~~~i~~lp~~i~~L 582 (1728)
+|++||+++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4778888888888888776553
No 369
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.35 E-value=0.067 Score=46.99 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 370
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.34 E-value=0.21 Score=60.88 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=35.1
Q ss_pred cccchHHHHHHHHHHHhc-------C---------CceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 157 QFDSRMKIFQNIMEVLKD-------T---------NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 157 ~~~gR~~~~~~l~~~L~~-------~---------~~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
.++|.+..++.+..++.+ . ..+.|.++|++|+|||++|+.+++..
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999888887655521 0 23578999999999999999999765
No 371
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.32 E-value=0.16 Score=51.30 Aligned_cols=105 Identities=16% Similarity=0.318 Sum_probs=42.1
Q ss_pred CChhHhcCCCcceEEEecCcCccccCc-cccCCCcccEEEecCccCCCc--cccccccCCceeecCCCCCCccch-Hhhc
Q 000280 551 IPDLFFEGMNELRVVHFTRTCFLSLPS-SLVCLISLRTLSLEGCQVGDV--AIVGQLKKLEILSFRNSDIQQLPR-EIGQ 626 (1728)
Q Consensus 551 i~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~~--~~i~~L~~L~~L~Ls~~~i~~LP~-~i~~ 626 (1728)
+++..|.++.+|+.+.+.. .+..++. .|..+.+|+.+.+.++ +..+ ..|.+...|+.+.+.+ .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 3444555555555555553 3444433 2555555555555543 3332 3445555555555544 3444433 2344
Q ss_pred cccccEEeccCcccccccCccccccCcccceeccC
Q 000280 627 LVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMG 661 (1728)
Q Consensus 627 L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~ 661 (1728)
.++|+.+++..+ +..++...+.+. +|+.+.+.
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 556666665442 444544445554 55555543
No 372
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.32 E-value=0.069 Score=58.48 Aligned_cols=25 Identities=44% Similarity=0.686 Sum_probs=23.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHHh
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVIE 203 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~~ 203 (1728)
+|+|.|.+|+||||+|++++.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999998863
No 373
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.31 E-value=0.07 Score=58.47 Aligned_cols=110 Identities=13% Similarity=0.198 Sum_probs=58.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHH-HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcC
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQ-TIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1728)
..|.|+|+.|+||||++..++..... .....+++ +.++.... .-...+..+-.. ..+.......++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t-~e~~~E~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr~- 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILT-IEDPIEFVHESKRSLINQREV----GLDTLSFENALKAALRQ- 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEE-EcCCccccccCccceeeeccc----CCCccCHHHHHHHHhcC-
Confidence 47899999999999999998877632 23333332 22221110 000001111000 11122234455666653
Q ss_pred CcEEEEEeCCCCccccccccCCCcccccccCCCCCCeEEEEEeCCchhh
Q 000280 257 KRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL 305 (1728)
Q Consensus 257 ~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~ 305 (1728)
..=.+++|++.+.+.+...... ...|-.++.|+....+.
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~----------a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTA----------AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHH----------HHcCCEEEEEecCCcHH
Confidence 5669999999877655443221 23344577777655443
No 374
>PRK06851 hypothetical protein; Provisional
Probab=93.28 E-value=0.87 Score=54.10 Aligned_cols=44 Identities=27% Similarity=0.265 Sum_probs=34.3
Q ss_pred cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC
Q 000280 174 DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT 218 (1728)
Q Consensus 174 ~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 218 (1728)
++--+++.|.|.+|+||||++++++..... +-++..++-+...+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~-~G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEE-RGFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCC
Confidence 444578999999999999999999999864 45666666655554
No 375
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.25 E-value=0.16 Score=59.23 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=38.6
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNK 227 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (1728)
.+++.+.|.|||||||+|.+.+-...... ..++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999888876543 45778877777776666543
No 376
>PRK05439 pantothenate kinase; Provisional
Probab=93.25 E-value=0.45 Score=55.26 Aligned_cols=46 Identities=22% Similarity=0.139 Sum_probs=31.6
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCC
Q 000280 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1728)
Q Consensus 175 ~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 220 (1728)
....+|+|.|.+|+||||+|+.+.........-..+.-++..+-..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 3567999999999999999999988664221123355555555443
No 377
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.24 E-value=1.2 Score=51.21 Aligned_cols=39 Identities=10% Similarity=0.208 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCC-ceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 164 IFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 164 ~~~~l~~~L~~~~-~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
.-+++...+..+. .+...++|+.|+||+++|..++...-
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~ll 44 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLIL 44 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHh
Confidence 3456777777654 45777999999999999999998773
No 378
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.19 E-value=0.16 Score=54.33 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=26.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEE
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv 213 (1728)
-.+++|.|..|.|||||.+.++.... ...+.+++
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~ 61 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILI 61 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEE
Confidence 35899999999999999999998653 23454443
No 379
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=0.35 Score=53.05 Aligned_cols=96 Identities=24% Similarity=0.266 Sum_probs=61.2
Q ss_pred cCccccccchHHHHHHHHHHHh----c---------CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLK----D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT 218 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 218 (1728)
...+.++-|-+..+.+|.+... . ..++-|.++|.+|.|||-||++|+++-... |=.++
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlRvv------- 251 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLRVV------- 251 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhhhh-------
Confidence 3345566788888888888875 1 235678899999999999999999976322 31111
Q ss_pred CCHHHHHHHHH-HHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 219 PDLQTIQNKLS-SDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 219 ~~~~~~~~~i~-~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
=.++. ..+| +-..++..+++.-....+-++.+|.++..
T Consensus 252 ------GseLiQkylG-------dGpklvRqlF~vA~e~apSIvFiDEIdAi 290 (440)
T KOG0726|consen 252 ------GSELIQKYLG-------DGPKLVRELFRVAEEHAPSIVFIDEIDAI 290 (440)
T ss_pred ------hHHHHHHHhc-------cchHHHHHHHHHHHhcCCceEEeehhhhh
Confidence 01111 1121 22245555666555567788888887654
No 380
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.17 E-value=0.47 Score=51.08 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=36.8
Q ss_pred cccccchHHHHHHHHHH----HhcCCceEEEEEcCCcchHHHHHHHHHHHHHh
Q 000280 155 YEQFDSRMKIFQNIMEV----LKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~----L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~ 203 (1728)
...++|-+...+.+++- +.+-...-|.+||.-|+|||.|++++.+.+..
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~ 111 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD 111 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh
Confidence 34566766666655543 33556678999999999999999999998854
No 381
>PRK13948 shikimate kinase; Provisional
Probab=93.13 E-value=0.34 Score=51.90 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 175 TNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 175 ~~~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
...+.|.++|+.|+||||+++.+++..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999876
No 382
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.12 E-value=0.55 Score=65.26 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=24.1
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
..+-|.++|++|+|||.||+++|.+..
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 456889999999999999999999873
No 383
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.11 E-value=0.44 Score=57.78 Aligned_cols=87 Identities=18% Similarity=0.267 Sum_probs=49.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHc
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT-PDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1728)
-.+|+++|..|+||||+++.++.........+.+.++..... ....+-+...++.++.+.....+..+.. .....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~-~al~~l~- 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQ-LMLHELR- 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHH-HHHHHhc-
Confidence 369999999999999999999886533323344555543321 1233334556666666554333433332 2233333
Q ss_pred CCcEEEEEeCC
Q 000280 256 VKRVLVILDNI 266 (1728)
Q Consensus 256 ~~~~LlVlDdv 266 (1728)
..-++++|-.
T Consensus 269 -~~d~VLIDTa 278 (420)
T PRK14721 269 -GKHMVLIDTV 278 (420)
T ss_pred -CCCEEEecCC
Confidence 3445666764
No 384
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.05 E-value=0.48 Score=55.16 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=36.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSS 230 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 230 (1728)
.++.|.|.+|+||||+|.+++...... +-..++|+++... ..++...+..
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~~--~~~~~~r~~~ 80 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEEP--VVRTARRLLG 80 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEcccC--HHHHHHHHHH
Confidence 588899999999999999998876422 2356889887663 4445544443
No 385
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.01 E-value=0.2 Score=54.03 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=22.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
.+++|.|..|+|||||++.++...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 589999999999999999998865
No 386
>PRK08233 hypothetical protein; Provisional
Probab=93.00 E-value=0.082 Score=57.33 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.9
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999876
No 387
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.99 E-value=0.26 Score=58.76 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=37.3
Q ss_pred ccccchHHHHHHHHHHHhcC--------------CceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLKDT--------------NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~~--------------~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
..++|.++.++.+.-++... ..+.|.++|++|+|||++|+.++....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788888888876666521 246899999999999999999999874
No 388
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.98 E-value=0.19 Score=54.89 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=22.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
++++|.|+.|.||||+.+.++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998655
No 389
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.98 E-value=0.28 Score=61.86 Aligned_cols=87 Identities=13% Similarity=0.285 Sum_probs=57.9
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhcc---------------CCC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ---------------NEN 241 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------~~~ 241 (1728)
-.++.|.|.+|+|||||+.+++.....+ -+.++|++..+. ..++... ++.++.+..+ ...
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs--~~~i~~~-~~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEES--RAQLLRN-AYSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCC--HHHHHHH-HHHcCCChHHHhhCCcEEEEEcccccCC
Confidence 4699999999999999999999887532 356788876654 4444444 2445433221 122
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 000280 242 VFQRAEKLRQRLKNVKRVLVILDNIWK 268 (1728)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~LlVlDdv~~ 268 (1728)
.++.+..+++.+.+.+.-.+|+|.+..
T Consensus 338 ~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 338 LEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 356667777777655666788888753
No 390
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.94 E-value=0.57 Score=60.65 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=52.7
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCC--HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD--LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK 254 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 254 (1728)
.++|+++|+.|+||||.+..++...........+..++.. .+. ..+-++..++.++.+.....+..+.. ...+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~-~al~~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLR-FALAALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHH-HHHHHhc
Confidence 4699999999999999999999877432222355565543 222 34455566666666554233444432 3333443
Q ss_pred cCCcEEEEEeCCC
Q 000280 255 NVKRVLVILDNIW 267 (1728)
Q Consensus 255 ~~~~~LlVlDdv~ 267 (1728)
++ =++++|-.-
T Consensus 263 -~~-D~VLIDTAG 273 (767)
T PRK14723 263 -DK-HLVLIDTVG 273 (767)
T ss_pred -CC-CEEEEeCCC
Confidence 23 477888765
No 391
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.92 E-value=0.086 Score=54.50 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
+|.+.|++|+||||+|++++...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999998765
No 392
>PTZ00301 uridine kinase; Provisional
Probab=92.87 E-value=0.097 Score=57.43 Aligned_cols=26 Identities=31% Similarity=0.652 Sum_probs=23.5
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
..+|+|.|.+|+||||+|+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988774
No 393
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.87 E-value=0.58 Score=56.83 Aligned_cols=91 Identities=22% Similarity=0.393 Sum_probs=60.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhh------ccCCCHHH------
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEF------KQNENVFQ------ 244 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~------ 244 (1728)
..++|.|..|+|||||+.++++..... +-+.++++-+++.. .+.++.+++...=.... ..++....
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~ 222 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL 222 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 588999999999999999999877532 23577888887765 46777777654321110 11222222
Q ss_pred HHHHHHHHHH--cCCcEEEEEeCCCCc
Q 000280 245 RAEKLRQRLK--NVKRVLVILDNIWKL 269 (1728)
Q Consensus 245 ~~~~l~~~l~--~~~~~LlVlDdv~~~ 269 (1728)
.+-.+.++++ +++++|+++||+-..
T Consensus 223 ~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 223 TGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 2334566664 368999999998654
No 394
>PF13245 AAA_19: Part of AAA domain
Probab=92.83 E-value=0.27 Score=43.98 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=18.9
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
+.+++.|.|.+|.|||+++.+.....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34688889999999995555544444
No 395
>PRK05973 replicative DNA helicase; Provisional
Probab=92.75 E-value=0.4 Score=53.41 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=34.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNK 227 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (1728)
.++.|.|.+|+|||++|.+++...... -..++|++.... ..++...
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC--HHHHHHH
Confidence 589999999999999999998877532 356778877664 3444443
No 396
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.74 E-value=0.71 Score=52.11 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=31.2
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT 218 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 218 (1728)
-..+.|.|.+|+||||+|.+++..... .-+.++|++....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEccCC
Confidence 469999999999999999998765532 2457889887543
No 397
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.74 E-value=0.1 Score=57.99 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=23.9
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
+..+|+|.|.+|+||||||+.++...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999876
No 398
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.74 E-value=0.18 Score=51.44 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=29.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECC
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ 217 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 217 (1728)
++|.|+|..|+|||||++.+.+.... +.+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR-RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH-cCCceEEEEEccC
Confidence 48999999999999999999999863 4566666666655
No 399
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.74 E-value=0.31 Score=58.84 Aligned_cols=89 Identities=15% Similarity=0.249 Sum_probs=56.6
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhh------ccCCCHHH-----
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEF------KQNENVFQ----- 244 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----- 244 (1728)
-..++|+|..|+|||||++.+++.. ..+.++.+-+++.. ++.++.++++..-+... ..++....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 3589999999999999999998643 24677777777765 35666666544322110 00222222
Q ss_pred -HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 000280 245 -RAEKLRQRLK-NVKRVLVILDNIWKL 269 (1728)
Q Consensus 245 -~~~~l~~~l~-~~~~~LlVlDdv~~~ 269 (1728)
.+-.+.+++. +++++|+++||+-..
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1223445553 479999999998654
No 400
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.72 E-value=0.53 Score=53.21 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=56.2
Q ss_pred eEEEEEcCCcchHHHHH-HHHHHHHHhccCCCee-EEEEECCCC-CHHHHHHHHHHHhhh-------hhccCCCHHH---
Q 000280 178 GMIGVYGVNGVGKTTLV-KQIAMQVIEDKLFDKV-VFVEVTQTP-DLQTIQNKLSSDLEL-------EFKQNENVFQ--- 244 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa-~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~--- 244 (1728)
..++|+|..|+|||+|| ..+++.. .-+.+ +++-+++.. +..++.+++...=.. ... ++....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~-d~~~~~r~~ 144 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATA-SDPAPLQYL 144 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCC-CCchhHHHH
Confidence 57899999999999996 5555542 23454 777777764 466666666543211 111 111111
Q ss_pred ---HHHHHHHHHH-cCCcEEEEEeCCCCc-cccccc
Q 000280 245 ---RAEKLRQRLK-NVKRVLVILDNIWKL-LNLDAV 275 (1728)
Q Consensus 245 ---~~~~l~~~l~-~~~~~LlVlDdv~~~-~~~~~l 275 (1728)
.+-.+.+++. +++++|+|+||+-.. ..++++
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 1234445554 469999999998665 334444
No 401
>PRK06762 hypothetical protein; Provisional
Probab=92.70 E-value=0.1 Score=55.58 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=22.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
..+|.|.|+.|+||||+|+++++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 402
>PTZ00494 tuzin-like protein; Provisional
Probab=92.64 E-value=2.9 Score=49.45 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=100.3
Q ss_pred cCccccccchHHHHHHHHHHHh---cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHH
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLK---DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKL 228 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~l~~~L~---~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 228 (1728)
+.....|+.|+++-..+.+.|. -..++++++.|.-|.||++|.+.+..... -..++|++...-| -+..|
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~ED---tLrsV 438 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGTED---TLRSV 438 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCCcc---hHHHH
Confidence 4456678999988777777776 34688999999999999999999887652 3467898887654 34677
Q ss_pred HHHhhhhhcc-CCCHHHHHHHHHHHHH---cCCcEEEEEeCCCCcccccccc---CCCcccccccCCCCCCeEEEEEeCC
Q 000280 229 SSDLELEFKQ-NENVFQRAEKLRQRLK---NVKRVLVILDNIWKLLNLDAVG---IPFGDVKKERNDDRSRCTVLLTSRN 301 (1728)
Q Consensus 229 ~~~l~~~~~~-~~~~~~~~~~l~~~l~---~~~~~LlVlDdv~~~~~~~~l~---~~~~~~~~~~~~~~~g~~ilvTtR~ 301 (1728)
.+.++.+.-+ =.+.-+.+.+-.+.-+ .++.-+||+-== +...+..+. ..+.. ...-|+|++----
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGssL~RVYnE~vaLac-------DrRlCHvv~EVpl 510 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGSDLGRVYGEVVSLVS-------DCQACHIVLAVPM 510 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCCcHHHHHHHHHHHHc-------cchhheeeeechH
Confidence 8888875431 1233333333222222 355666666321 111111110 01111 3345677764333
Q ss_pred chhhc--ccCCCccEEEccCCCHHHHHHHHHHHh
Q 000280 302 RDVLC--NDMNSQKFFLIEVLSYEEAWCLFEKIV 333 (1728)
Q Consensus 302 ~~v~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 333 (1728)
+.+.. .....-.-|.+++++.++|.++-....
T Consensus 511 ESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 511 KALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 32211 123345678999999999998866544
No 403
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.64 E-value=0.29 Score=52.00 Aligned_cols=121 Identities=17% Similarity=0.077 Sum_probs=62.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEE-------EECCCCCH--HHHHHHHHHHhhhhhccCCCHHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV-------EVTQTPDL--QTIQNKLSSDLELEFKQNENVFQRAEK 248 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv-------~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~ 248 (1728)
.+++|+|..|.|||||++.++..... ..+.+++ .+.+.+.. ..+.+.+... ....-..-+.+.-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 58999999999999999999886532 2222222 12222211 1233333211 11101112223334
Q ss_pred HHHHHHcCCcEEEEEeCCCCcccccc---ccCCCcccccccCCCCCCeEEEEEeCCchhhcccCCCccEEEc
Q 000280 249 LRQRLKNVKRVLVILDNIWKLLNLDA---VGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFFLI 317 (1728)
Q Consensus 249 l~~~l~~~~~~LlVlDdv~~~~~~~~---l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~~~~~~~~~~l 317 (1728)
+.+.+. .++-++++|+--...|.+. +...+.. . +..||++|.+..... .+++.+.+
T Consensus 102 laral~-~~p~~lllDEPt~~LD~~~~~~l~~~l~~-------~--~~tiiivsh~~~~~~---~~d~i~~l 160 (166)
T cd03223 102 FARLLL-HKPKFVFLDEATSALDEESEDRLYQLLKE-------L--GITVISVGHRPSLWK---FHDRVLDL 160 (166)
T ss_pred HHHHHH-cCCCEEEEECCccccCHHHHHHHHHHHHH-------h--CCEEEEEeCChhHHh---hCCEEEEE
Confidence 555555 5778889999766544322 2111211 1 356888887765533 23444444
No 404
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.62 E-value=0.12 Score=50.01 Aligned_cols=24 Identities=42% Similarity=0.803 Sum_probs=21.4
Q ss_pred EEEEcCCcchHHHHHHHHHHHHHh
Q 000280 180 IGVYGVNGVGKTTLVKQIAMQVIE 203 (1728)
Q Consensus 180 i~I~G~gG~GKTtLa~~~~~~~~~ 203 (1728)
|-|+|.+|+|||++|+.++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999988854
No 405
>COG4240 Predicted kinase [General function prediction only]
Probab=92.60 E-value=0.47 Score=50.38 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=54.8
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhh----hhccCCCHHHHHHHHH
Q 000280 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLEL----EFKQNENVFQRAEKLR 250 (1728)
Q Consensus 175 ~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~----~~~~~~~~~~~~~~l~ 250 (1728)
+..-+++|.|+-|+||||++..+++....+.. +.++..++.+-+-...-+..++++... ...+..........+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 45679999999999999999999999875543 578888877766666666667776422 1111233334444555
Q ss_pred HHHHcCC
Q 000280 251 QRLKNVK 257 (1728)
Q Consensus 251 ~~l~~~~ 257 (1728)
+.+.+++
T Consensus 127 nai~~g~ 133 (300)
T COG4240 127 NAIARGG 133 (300)
T ss_pred HHHhcCC
Confidence 5555444
No 406
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.51 E-value=2.1 Score=53.86 Aligned_cols=131 Identities=21% Similarity=0.213 Sum_probs=70.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhc-c-----CCCeeEEEEECCCC-----CH------------HHHHHHHHHHhhh
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIED-K-----LFDKVVFVEVTQTP-----DL------------QTIQNKLSSDLEL 234 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~-~-----~f~~~~wv~~~~~~-----~~------------~~~~~~i~~~l~~ 234 (1728)
..|+|+|+.|+|||||.+.++...... . .--.+.|+.-.... ++ ..-.+..+.+++.
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 589999999999999999997765322 0 00112333221100 11 2233333444443
Q ss_pred hhccC------CCHHHHHHHHHHHHHcCCcEEEEEeCCCCccccccc---cCCCcccccccCCCCCCeEEEEEeCCchhh
Q 000280 235 EFKQN------ENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAV---GIPFGDVKKERNDDRSRCTVLLTSRNRDVL 305 (1728)
Q Consensus 235 ~~~~~------~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l---~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~ 305 (1728)
..+.. -+--++.+.....+.-.+.-+||||.=-|..|.+.+ ...+. .-.|+ ||+.|.++...
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~--------~f~Gt-vl~VSHDr~Fl 499 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL--------DFEGT-VLLVSHDRYFL 499 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHH--------hCCCe-EEEEeCCHHHH
Confidence 32211 122233444444444468899999998777554432 22222 23454 88889998776
Q ss_pred cccCCCccEEEccC
Q 000280 306 CNDMNSQKFFLIEV 319 (1728)
Q Consensus 306 ~~~~~~~~~~~l~~ 319 (1728)
.. -+.+++.+++
T Consensus 500 ~~--va~~i~~~~~ 511 (530)
T COG0488 500 DR--VATRIWLVED 511 (530)
T ss_pred Hh--hcceEEEEcC
Confidence 62 2344555553
No 407
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.49 E-value=0.48 Score=57.95 Aligned_cols=91 Identities=23% Similarity=0.351 Sum_probs=59.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhh-------------ccCCCHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEF-------------KQNENVF 243 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------------~~~~~~~ 243 (1728)
..++|.|..|+|||||+.+++..... .+-+.++++-+++.. .+.++...+...-.... ...+...
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~~~-~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~ 240 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 240 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHHHH-hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHH
Confidence 57899999999999999999988432 122788999888775 46777776655111000 0011111
Q ss_pred ------HHHHHHHHHHHc-C-CcEEEEEeCCCCc
Q 000280 244 ------QRAEKLRQRLKN-V-KRVLVILDNIWKL 269 (1728)
Q Consensus 244 ------~~~~~l~~~l~~-~-~~~LlVlDdv~~~ 269 (1728)
..+-.+.++++. + +++||++||+-..
T Consensus 241 ~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 241 ARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 223446677753 4 4999999998654
No 408
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.48 E-value=0.41 Score=49.12 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=27.5
Q ss_pred HHhcCCceEEEEEcCCcchHHHHHHHHHHHHHh
Q 000280 171 VLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1728)
Q Consensus 171 ~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~ 203 (1728)
.+...+..+|.+.|..|.||||+|.++++....
T Consensus 17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 17 ALKGQKGAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred HHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 333455679999999999999999999998854
No 409
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.45 E-value=0.12 Score=59.22 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=21.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHh
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~ 203 (1728)
+.|.|+|.+|+||||+|+++......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999998864
No 410
>PRK03839 putative kinase; Provisional
Probab=92.43 E-value=0.11 Score=56.30 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=21.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 411
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.38 E-value=0.24 Score=63.71 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=53.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHh
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDL 232 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 232 (1728)
.-...++|+++.++.+..++.... .+.++|+.|+||||+|+.+++..... .|..++++. ....+..+++..++.++
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~-n~~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYP-NPEDPNMPRIVEVPAGE 90 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEe-CCCCCchHHHHHHHHhh
Confidence 345678899998888887776653 66699999999999999999877432 333334332 22234556677777776
Q ss_pred hh
Q 000280 233 EL 234 (1728)
Q Consensus 233 ~~ 234 (1728)
+.
T Consensus 91 g~ 92 (608)
T TIGR00764 91 GR 92 (608)
T ss_pred ch
Confidence 64
No 412
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.37 E-value=0.15 Score=55.46 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=26.0
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccC
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKL 206 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~ 206 (1728)
....|.++||+|+||||..+.++.+...++.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ 48 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKT 48 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccC
Confidence 3468889999999999999999998865543
No 413
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.34 E-value=0.45 Score=58.65 Aligned_cols=87 Identities=20% Similarity=0.252 Sum_probs=47.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcC
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT-PDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1728)
++++++|+.|+||||.+.+++.....+.....+..|..... ....+-+...++.++.......+..+....+ ..+.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~-- 333 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR-- 333 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc--
Confidence 69999999999999999999987743322234555554321 1223334444555555433122222222211 2232
Q ss_pred CcEEEEEeCCC
Q 000280 257 KRVLVILDNIW 267 (1728)
Q Consensus 257 ~~~LlVlDdv~ 267 (1728)
..-.+++|..-
T Consensus 334 d~d~VLIDTaG 344 (484)
T PRK06995 334 NKHIVLIDTIG 344 (484)
T ss_pred CCCeEEeCCCC
Confidence 33466777754
No 414
>PRK08149 ATP synthase SpaL; Validated
Probab=92.28 E-value=0.35 Score=58.57 Aligned_cols=89 Identities=17% Similarity=0.289 Sum_probs=55.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCHHHHHHHHHHHhhhh-----hc-cCCCHH------
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT-PDLQTIQNKLSSDLELE-----FK-QNENVF------ 243 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-----~~-~~~~~~------ 243 (1728)
-..++|+|..|+|||||++.+++... .+.+++..+... .++.++..+........ .. .++...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 35899999999999999999987542 345555555544 35666666665543211 00 011111
Q ss_pred HHHHHHHHHHH-cCCcEEEEEeCCCCc
Q 000280 244 QRAEKLRQRLK-NVKRVLVILDNIWKL 269 (1728)
Q Consensus 244 ~~~~~l~~~l~-~~~~~LlVlDdv~~~ 269 (1728)
..+..+.+++. +++++||++||+-..
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 12334455553 479999999998654
No 415
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.27 E-value=0.17 Score=59.56 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=40.5
Q ss_pred CccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 153 ~~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
.+...++|.++.++.+.-.+.+.+..-+.+.|..|+||||+|+.+++-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3456789999998888766656666779999999999999999998765
No 416
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.27 E-value=0.59 Score=56.73 Aligned_cols=89 Identities=18% Similarity=0.249 Sum_probs=56.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhh------ccCCCHHH-----
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEF------KQNENVFQ----- 244 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----- 244 (1728)
-..++|+|..|+|||||++++++... .+.++++-+++.. .+.++..+.+..-+... ..++....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 46889999999999999999997653 3566677777665 35566554444322110 00122111
Q ss_pred -HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 000280 245 -RAEKLRQRLK-NVKRVLVILDNIWKL 269 (1728)
Q Consensus 245 -~~~~l~~~l~-~~~~~LlVlDdv~~~ 269 (1728)
.+-.+.+++. +++++|+++||+-..
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 2233555553 579999999998554
No 417
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.25 E-value=0.38 Score=58.16 Aligned_cols=92 Identities=21% Similarity=0.194 Sum_probs=59.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhcc--CCC---------eeEEEEECCCCCHHHHHHHHHHHhh-hhh------ccC
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDK--LFD---------KVVFVEVTQTPDLQTIQNKLSSDLE-LEF------KQN 239 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~--~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~------~~~ 239 (1728)
..++|.|-+|+|||||+.++++...... -.| .++++-+++..+..+.+.+.+..-+ ... ..+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 5789999999999999999998874100 012 5788888888666665555555444 110 001
Q ss_pred CCHHH------HHHHHHHHHH--cCCcEEEEEeCCCCc
Q 000280 240 ENVFQ------RAEKLRQRLK--NVKRVLVILDNIWKL 269 (1728)
Q Consensus 240 ~~~~~------~~~~l~~~l~--~~~~~LlVlDdv~~~ 269 (1728)
+.... .+-.+.+++. +++++|+++||+-..
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 21111 2234566666 479999999998543
No 418
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=92.21 E-value=0.13 Score=55.45 Aligned_cols=27 Identities=41% Similarity=0.581 Sum_probs=24.5
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
.+.+|||.|.+|+||||+|++++....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999999885
No 419
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.20 E-value=0.016 Score=62.81 Aligned_cols=79 Identities=25% Similarity=0.257 Sum_probs=38.5
Q ss_pred CCCcccEEEecCccCCCccccccccCCceeecCCCCCCccch--HhhccccccEEeccCcccccccCcc----ccccCcc
Q 000280 581 CLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPR--EIGQLVQLRLLDLRNCRRLQAIAPN----VISKLSR 654 (1728)
Q Consensus 581 ~L~~Lr~L~L~~~~i~~~~~i~~L~~L~~L~Ls~~~i~~LP~--~i~~L~~L~~L~L~~~~~l~~lp~~----~i~~L~~ 654 (1728)
++..|.+|.|+-|.|+.+..+..+++|+.|.|+.|.|..+-+ -+.+|++|+.|-|..|.....-+.+ ++.-|++
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn 118 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN 118 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHccc
Confidence 344444444444444444445555555555555555544422 2445556666655555433333322 2445666
Q ss_pred cceec
Q 000280 655 LEELY 659 (1728)
Q Consensus 655 L~~L~ 659 (1728)
|+.|+
T Consensus 119 LkKLD 123 (388)
T KOG2123|consen 119 LKKLD 123 (388)
T ss_pred chhcc
Confidence 66664
No 420
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.19 E-value=0.058 Score=60.62 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=23.0
Q ss_pred EEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEEC
Q 000280 182 VYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVT 216 (1728)
Q Consensus 182 I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 216 (1728)
|+|++|+||||+++.+.+..... -..++-|+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~--~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN--GRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc--cCCceEEEcc
Confidence 68999999999999999988543 2345555554
No 421
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.19 E-value=0.09 Score=51.42 Aligned_cols=27 Identities=44% Similarity=0.533 Sum_probs=19.0
Q ss_pred EEEEcCCcchHHHHHHHHHHHHHhccCCC
Q 000280 180 IGVYGVNGVGKTTLVKQIAMQVIEDKLFD 208 (1728)
Q Consensus 180 i~I~G~gG~GKTtLa~~~~~~~~~~~~f~ 208 (1728)
|.|+|.+|+||||+|+.+++... ..|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~--~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG--LSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EE
T ss_pred EeeECCCccHHHHHHHHHHHHcC--Ccee
Confidence 67999999999999999999873 3453
No 422
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.19 E-value=0.13 Score=56.97 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=23.9
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
...+|+|+|++|+||||||+.++....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999998763
No 423
>PRK00625 shikimate kinase; Provisional
Probab=92.15 E-value=0.12 Score=55.00 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=21.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
.|.++|+.|+||||+|+.++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 424
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.13 E-value=0.13 Score=56.09 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.4
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
+.++|+|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999765
No 425
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.12 E-value=0.45 Score=55.26 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=55.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHH----hhh----------hhccCCCH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSD----LEL----------EFKQNENV 242 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~----l~~----------~~~~~~~~ 242 (1728)
..++|.|..|+|||+|+++++++. +-+.++++-+++.. .+.+++.++-+. .+. +.. ....
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts-~~p~ 232 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTS-NMPV 232 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECC-CCCH
Confidence 589999999999999999999864 34678899988765 456666654321 110 011 1111
Q ss_pred HH------HHHHHHHHHH-cCCcEEEEEeCCCC
Q 000280 243 FQ------RAEKLRQRLK-NVKRVLVILDNIWK 268 (1728)
Q Consensus 243 ~~------~~~~l~~~l~-~~~~~LlVlDdv~~ 268 (1728)
.. .+-.+.++++ +++++|+++|++..
T Consensus 233 ~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR 265 (369)
T cd01134 233 AAREASIYTGITIAEYFRDMGYNVALMADSTSR 265 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhH
Confidence 11 1223445553 47999999999743
No 426
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.11 E-value=15 Score=48.20 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.7
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
-..|+|+|..|+|||||||.+..-..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999977653
No 427
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.06 E-value=0.49 Score=57.99 Aligned_cols=92 Identities=21% Similarity=0.175 Sum_probs=59.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCC--CeeEEEEECCCC-CHHHHHHHHHHHhhhhh------ccCCCHH-----
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLF--DKVVFVEVTQTP-DLQTIQNKLSSDLELEF------KQNENVF----- 243 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~----- 243 (1728)
..++|.|-.|+|||||+.++++.......+ ..++++-+++.. ++.++.+.+...=.... ..++...
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 578999999999999999999877533111 157788887665 46677766654322110 0011111
Q ss_pred -HHHHHHHHHHH--cCCcEEEEEeCCCCc
Q 000280 244 -QRAEKLRQRLK--NVKRVLVILDNIWKL 269 (1728)
Q Consensus 244 -~~~~~l~~~l~--~~~~~LlVlDdv~~~ 269 (1728)
-.+..+.++++ +++++|+++||+-..
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 12334667776 579999999998654
No 428
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.06 E-value=0.15 Score=54.12 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=32.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCC
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD 220 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 220 (1728)
..++.+.|+.|+|||.+|+++++.... +.....+-++++.-.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 467889999999999999999998842 2345666676665444
No 429
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.05 E-value=0.28 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEcCCcchHHHHHHHHHHHH
Q 000280 180 IGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 180 i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
|+|+|+.|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999875
No 430
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.04 E-value=0.7 Score=56.22 Aligned_cols=91 Identities=19% Similarity=0.199 Sum_probs=55.0
Q ss_pred eEEEEEcCCcchHHHHH-HHHHHHHHhc-----cCCCeeEEEEECCCCC-HHHHHHHHHHHhh-hhh------ccCCCHH
Q 000280 178 GMIGVYGVNGVGKTTLV-KQIAMQVIED-----KLFDKVVFVEVTQTPD-LQTIQNKLSSDLE-LEF------KQNENVF 243 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa-~~~~~~~~~~-----~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~-~~~------~~~~~~~ 243 (1728)
..++|.|..|+|||+|| -.+.++.... +.-+.++++-+++... +.++ .+.+.+-+ ... ...+...
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei-~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARI-HRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHH-HHHHHhcCCccceEEEEECCCCCHH
Confidence 57899999999999997 5667765321 2446788999988764 4443 33333332 110 0011111
Q ss_pred H------HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 000280 244 Q------RAEKLRQRLK-NVKRVLVILDNIWKL 269 (1728)
Q Consensus 244 ~------~~~~l~~~l~-~~~~~LlVlDdv~~~ 269 (1728)
. .+..+.+++. +++.+|+|+||+-..
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1 1233444553 479999999998654
No 431
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.04 E-value=0.34 Score=60.11 Aligned_cols=83 Identities=25% Similarity=0.343 Sum_probs=50.9
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhc-----cCCCHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFK-----QNENVFQRAEKLRQ 251 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 251 (1728)
-.++.|.|.+|+|||||+.+++...... -..++|++..+. ..++.. -++.++...+ .+.+. ..+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l----~~i~~ 150 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNL----EAILA 150 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCH----HHHHH
Confidence 4689999999999999999999887522 346788876543 333322 2455543221 11222 23444
Q ss_pred HHHcCCcEEEEEeCCCC
Q 000280 252 RLKNVKRVLVILDNIWK 268 (1728)
Q Consensus 252 ~l~~~~~~LlVlDdv~~ 268 (1728)
.+.+.+.-++|+|.+..
T Consensus 151 ~i~~~~~~lVVIDSIq~ 167 (446)
T PRK11823 151 TIEEEKPDLVVIDSIQT 167 (446)
T ss_pred HHHhhCCCEEEEechhh
Confidence 44434566788888743
No 432
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.01 E-value=0.49 Score=55.67 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=26.8
Q ss_pred EEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECC
Q 000280 180 IGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ 217 (1728)
Q Consensus 180 i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 217 (1728)
+++.|+.|+||||+|+.++........+ .+++++..+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~Dd 38 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITYDD 38 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEcccc
Confidence 6789999999999999999887532222 345555443
No 433
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=92.00 E-value=0.44 Score=57.73 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=35.8
Q ss_pred ccccchHHHHHHHHHHHh-------c-------C----CceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLK-------D-------T----NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~-------~-------~----~~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
..++|.++.++.+..++. . + ....|.++|++|+|||++|+.++...
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 346899998888876662 1 1 12579999999999999999999765
No 434
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=91.98 E-value=0.39 Score=58.28 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=51.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHh-----hhhhccCCCHHH------HH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDL-----ELEFKQNENVFQ------RA 246 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~------~~ 246 (1728)
..++|+|..|+|||||++.++.... ...+++++.-....++.++........ +.-...++.... .+
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5899999999999999998876542 222444443323445555544333322 111111222221 22
Q ss_pred HHHHHHHH-cCCcEEEEEeCCCCc
Q 000280 247 EKLRQRLK-NVKRVLVILDNIWKL 269 (1728)
Q Consensus 247 ~~l~~~l~-~~~~~LlVlDdv~~~ 269 (1728)
-.+.+++. +++++|+++||+-..
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchHHH
Confidence 33445554 479999999998554
No 435
>PRK13949 shikimate kinase; Provisional
Probab=91.97 E-value=0.24 Score=52.65 Aligned_cols=25 Identities=40% Similarity=0.392 Sum_probs=22.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
+.|.|+|+.|+||||+|+.+++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999999873
No 436
>PRK04040 adenylate kinase; Provisional
Probab=91.96 E-value=0.14 Score=55.34 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.9
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
..+|+|+|++|+||||+++.++...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999877
No 437
>PTZ00088 adenylate kinase 1; Provisional
Probab=91.92 E-value=0.24 Score=55.28 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
.|.|.|++|+||||+|+.+++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 438
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.86 E-value=0.51 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=22.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
.+++|+|..|.|||||++.++...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 589999999999999999999865
No 439
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.85 E-value=0.023 Score=59.23 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=21.1
Q ss_pred cCccceeeccCCCCcccccCCcccCCCcccceEEEeccccch
Q 000280 1446 FPQLTFLILRGLPRLKSFYPGVHISEWPVLKKLVVWECAEVE 1487 (1728)
Q Consensus 1446 l~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~ 1487 (1728)
.|+|+.|+|++|+.+++..-. +...+++|+.|.+++-+.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCchhhh
Confidence 455566666666665555321 22345556666555555433
No 440
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.85 E-value=0.37 Score=51.28 Aligned_cols=122 Identities=17% Similarity=0.189 Sum_probs=68.4
Q ss_pred HHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhc-cCCC--eeEEEEECCCCCHHH-----HHHHHHHHhhhhhc
Q 000280 166 QNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIED-KLFD--KVVFVEVTQTPDLQT-----IQNKLSSDLELEFK 237 (1728)
Q Consensus 166 ~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~-~~f~--~~~wv~~~~~~~~~~-----~~~~i~~~l~~~~~ 237 (1728)
+-+++.|.+.+.--..|.|++|+||||+.+.+++-.... +.|- .+.-|+-+. .+.. -+..+..+...-.
T Consensus 126 ~~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers--EIag~~~gvpq~~~g~R~dVld- 202 (308)
T COG3854 126 NPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS--EIAGCLNGVPQHGRGRRMDVLD- 202 (308)
T ss_pred hHHHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc--hhhccccCCchhhhhhhhhhcc-
Confidence 336666666666678899999999999999999877543 2342 233333221 1110 0011111111100
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCccccccccCCCcccccccCCCCCCeEEEEEeCCchh
Q 000280 238 QNENVFQRAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDV 304 (1728)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v 304 (1728)
... .+.-+......-.+=.+|.|.+...++-.++..+ .+.|.+++.|..-..+
T Consensus 203 -~cp---k~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta----------~~~GVkli~TaHG~~i 255 (308)
T COG3854 203 -PCP---KAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTA----------LHAGVKLITTAHGNGI 255 (308)
T ss_pred -cch---HHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHH----------HhcCcEEEEeeccccH
Confidence 111 1122223333346778999999988776666444 4568888777655443
No 441
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.82 E-value=0.28 Score=49.04 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=28.9
Q ss_pred HHHHHHHHHhc--CCceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 164 IFQNIMEVLKD--TNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 164 ~~~~l~~~L~~--~~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
+.+++-+.|.. ..-.+|.+.|.-|+||||+++.+++...
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44444444442 2335899999999999999999999764
No 442
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.79 E-value=0.34 Score=48.93 Aligned_cols=115 Identities=14% Similarity=0.290 Sum_probs=63.9
Q ss_pred CCCCeEEEEEeccCCCCCcCChhHhcCCCcceEEEecCcCccccCc-cccCCCcccEEEecCccCCC--ccccccccCCc
Q 000280 532 ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPS-SLVCLISLRTLSLEGCQVGD--VAIVGQLKKLE 608 (1728)
Q Consensus 532 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~--~~~i~~L~~L~ 608 (1728)
.|.+|+.+.+.. ....++...|.+++.|+.+.+..+ +..++. .|..+..|+.+.+.. .+.. ...|....+|+
T Consensus 10 ~~~~l~~i~~~~---~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN---TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS---T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC---CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 456788877653 456788888999999999999875 777764 478887899999976 4332 25677789999
Q ss_pred eeecCCCCCCccch-HhhccccccEEeccCcccccccCccccccCccc
Q 000280 609 ILSFRNSDIQQLPR-EIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRL 655 (1728)
Q Consensus 609 ~L~Ls~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L 655 (1728)
.+++..+ +..++. .+.+. +|+.+.+.. .+..++.+.+.+.++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 9999765 666655 35665 888888775 3666777666655554
No 443
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.76 E-value=0.32 Score=51.86 Aligned_cols=25 Identities=52% Similarity=0.664 Sum_probs=22.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
-.+++|+|..|+|||||++.++.-.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3599999999999999999998765
No 444
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.68 E-value=0.4 Score=59.44 Aligned_cols=83 Identities=27% Similarity=0.336 Sum_probs=49.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhc-----cCCCHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFK-----QNENVFQRAEKLRQ 251 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 251 (1728)
-.++.|.|.+|+|||||+.+++...... -..++|++..+. ..++.. -+..++...+ .+.+ ...+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~----~~~I~~ 164 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETN----WEQICA 164 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCC----HHHHHH
Confidence 4689999999999999999998877532 245888876543 333221 2334433221 0112 233444
Q ss_pred HHHcCCcEEEEEeCCCC
Q 000280 252 RLKNVKRVLVILDNIWK 268 (1728)
Q Consensus 252 ~l~~~~~~LlVlDdv~~ 268 (1728)
.+.+.+.-++|+|.+..
T Consensus 165 ~i~~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 165 NIEEENPQACVIDSIQT 181 (454)
T ss_pred HHHhcCCcEEEEecchh
Confidence 44444566788887754
No 445
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.68 E-value=0.44 Score=54.50 Aligned_cols=25 Identities=40% Similarity=0.644 Sum_probs=22.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHHh
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVIE 203 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~~ 203 (1728)
.|.++|.+|+||||+|+++++....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999988753
No 446
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.68 E-value=0.25 Score=57.85 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=32.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQ 225 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 225 (1728)
+++.+.|-|||||||+|.+.+-....+. ..+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 6889999999999999999988876432 345566655554444443
No 447
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.61 E-value=0.048 Score=56.98 Aligned_cols=65 Identities=18% Similarity=0.318 Sum_probs=47.3
Q ss_pred CcceeeeccccchhHHHhccCccccccccccccccEEecCCCCCcceeecCCccccCCCccEEEeccCCCccc
Q 000280 1067 NLMTLRVSYCHNIEEIIRHVGEDVKENRITFNQLKNLELDDLPSLTSFCLGNCTLEFPSLERVFVRNCRNMKT 1139 (1728)
Q Consensus 1067 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~l~sL~~L~i~~C~~l~~ 1139 (1728)
.++.++-+++..+.+-..... .+++++.|.+.+|..+.+++......-.++|+.|+|++|+.++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~--------~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR--------DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh--------ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 345566666654443333332 47888899999999998888776666789999999999999864
No 448
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.60 E-value=1.4 Score=52.01 Aligned_cols=39 Identities=38% Similarity=0.688 Sum_probs=30.6
Q ss_pred HHHHHHHh--cCCceEEEEEcCCcchHHHHHHHHHHHHHhc
Q 000280 166 QNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1728)
Q Consensus 166 ~~l~~~L~--~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~ 204 (1728)
.++++.+. ..+..+|+|.|.+|+|||||+..+....+..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34555544 3567899999999999999999999888643
No 449
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=91.60 E-value=0.44 Score=56.91 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=38.0
Q ss_pred ccccchHHHHHHHHHHHhc--------------CCceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLKD--------------TNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~--------------~~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
..++|.++.++.+..++.. -..+.|.++|+.|+|||++|+.+++...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3478999888888877742 0146899999999999999999999873
No 450
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.59 E-value=0.31 Score=50.29 Aligned_cols=102 Identities=27% Similarity=0.236 Sum_probs=55.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcCC
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNVK 257 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (1728)
.+++|.|..|.|||||++.++.... ...+.+|+.-.. .++.-.. -..-+.+.-.+.+.+. .+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~~-lS~G~~~rv~laral~-~~ 88 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFEQ-LSGGEKMRLALAKLLL-EN 88 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEcc-CCHHHHHHHHHHHHHh-cC
Confidence 5899999999999999999988653 234545442100 0000000 0111122233455555 47
Q ss_pred cEEEEEeCCCCcccc---ccccCCCcccccccCCCCCCeEEEEEeCCchhhc
Q 000280 258 RVLVILDNIWKLLNL---DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC 306 (1728)
Q Consensus 258 ~~LlVlDdv~~~~~~---~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~ 306 (1728)
+-++++|+-....|. +.+...+.. . +..||++|.+.....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~-------~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKE-------Y--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHH-------c--CCEEEEEECCHHHHH
Confidence 778999997665332 222222221 1 246888887766543
No 451
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=91.58 E-value=0.31 Score=64.69 Aligned_cols=61 Identities=11% Similarity=0.216 Sum_probs=43.1
Q ss_pred cccccchHHHHHHHHHHHh--cCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECC
Q 000280 155 YEQFDSRMKIFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ 217 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~--~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 217 (1728)
...++|+...+..+.+.+. ......|.|+|..|+|||++|+.+.+... ..-...+.+++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~--r~~~~~v~i~c~~ 437 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG--RNNRRMVKMNCAA 437 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC--CCCCCeEEEeccc
Confidence 3468899888888877665 23345789999999999999999987652 1122345555554
No 452
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.50 E-value=0.16 Score=54.53 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=23.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
...|.|+|++|+||||+|++++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999987
No 453
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.43 E-value=0.93 Score=51.72 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=36.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLS 229 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 229 (1728)
.++.|.|.+|+|||++|.+++.+.... +=..++|++... +..++...++
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCC--CHHHHHHHHH
Confidence 589999999999999999998877533 234677887665 4455555554
No 454
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.41 E-value=0.5 Score=50.60 Aligned_cols=33 Identities=36% Similarity=0.397 Sum_probs=25.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEE
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv 213 (1728)
.+++|+|..|.|||||++.++.... ...+.+++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~ 59 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKV 59 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE
Confidence 5899999999999999999988652 23444544
No 455
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.41 E-value=2.7 Score=47.21 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=26.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEEC
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVT 216 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 216 (1728)
+|+|.|..|+||||+|+++.+..+..+ ..++.++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D 36 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGD 36 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEecc
Confidence 589999999999999999998875322 224445443
No 456
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.41 E-value=1.9 Score=50.84 Aligned_cols=28 Identities=43% Similarity=0.481 Sum_probs=25.2
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHh
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~ 203 (1728)
+..+|+++|++|+||||++..++...+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4679999999999999999999998863
No 457
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.30 E-value=0.14 Score=54.84 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=21.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 458
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.29 E-value=0.014 Score=61.44 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=35.4
Q ss_pred cccEEEecCccCCCc-cccccccCCceeecCCCCCCccchHhhccccccEEeccCcccccccCccccccCcccceeccC
Q 000280 584 SLRTLSLEGCQVGDV-AIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMG 661 (1728)
Q Consensus 584 ~Lr~L~L~~~~i~~~-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~ 661 (1728)
.-.+||++.|++... ..|..+..|..||++.|.+..+|..++++..++++++..| .....|.+ .++++.++.++..
T Consensus 43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-QKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-ccccCCcchhhhc
Confidence 334444444443322 3344444444455555555555555555555555554444 34444444 4455555444443
No 459
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=91.29 E-value=0.28 Score=58.03 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=40.5
Q ss_pred cccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 155 YEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 155 ~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
...++|.++.+..++-.+.++...-|.|.|..|+||||+++.++.-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34678999999888777778777788899999999999999998766
No 460
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.24 E-value=0.27 Score=51.75 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=61.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCC--HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHc
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPD--LQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 255 (1728)
.+++|+|..|.|||||++.++.... ...+.+++.-..... ..+. ...++.-.. -..-+...-.+.+.+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~q-lS~G~~~r~~l~~~l~- 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEEL----RRRIGYVPQ-LSGGQRQRVALARALL- 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHH----HhceEEEee-CCHHHHHHHHHHHHHh-
Confidence 6999999999999999999987652 345666554321111 1111 111111110 1111222233455555
Q ss_pred CCcEEEEEeCCCCccccc---cccCCCcccccccCCCCCCeEEEEEeCCchhhc
Q 000280 256 VKRVLVILDNIWKLLNLD---AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC 306 (1728)
Q Consensus 256 ~~~~LlVlDdv~~~~~~~---~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~ 306 (1728)
...-++++|+.....|.+ .+...+.. . ...+..++++|.+.....
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~----~--~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRE----L--AEEGRTVIIVTHDPELAE 144 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHH----H--HHCCCEEEEEeCCHHHHH
Confidence 467899999987654322 12111111 0 112456888888776654
No 461
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.24 E-value=0.45 Score=52.27 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=25.4
Q ss_pred cCCceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 174 DTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 174 ~~~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
.....+|+|+|++|+||||+|+.+.....
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567999999999999999999999774
No 462
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.23 E-value=0.15 Score=52.16 Aligned_cols=20 Identities=45% Similarity=0.743 Sum_probs=18.9
Q ss_pred EEEEEcCCcchHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIA 198 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~ 198 (1728)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 463
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=91.22 E-value=0.57 Score=52.56 Aligned_cols=59 Identities=27% Similarity=0.432 Sum_probs=41.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHHhc-cCC-------CeeEEEEECCC-CCHHHHHHHHHHHhhhhhc
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVIED-KLF-------DKVVFVEVTQT-PDLQTIQNKLSSDLELEFK 237 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~~~-~~f-------~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~ 237 (1728)
++.|+|.||+||||++...+-..... +-| ..+++|++... .++.+-++.+..+++....
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPa 158 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPA 158 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChH
Confidence 55677999999999998876555432 223 46888888654 3566667778888876543
No 464
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=91.19 E-value=0.33 Score=55.45 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=30.3
Q ss_pred HHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 167 NIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 167 ~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
+..+++.+.+..+|.|.|.+|+|||||+..+.+...
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344555567889999999999999999999999874
No 465
>PRK06936 type III secretion system ATPase; Provisional
Probab=91.17 E-value=0.69 Score=56.11 Aligned_cols=89 Identities=18% Similarity=0.333 Sum_probs=57.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC-CHHHHHHHHHHHhhhhh------ccCCCHHHH----
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP-DLQTIQNKLSSDLELEF------KQNENVFQR---- 245 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~~---- 245 (1728)
-..++|.|..|+|||||.+.+++... .+.++++-+++.. .+.++.+..+..-+... ..++....+
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 35899999999999999999998753 4678888887765 45565544433211110 001222221
Q ss_pred --HHHHHHHHH-cCCcEEEEEeCCCCc
Q 000280 246 --AEKLRQRLK-NVKRVLVILDNIWKL 269 (1728)
Q Consensus 246 --~~~l~~~l~-~~~~~LlVlDdv~~~ 269 (1728)
+-.+.++++ +++++|+++||+-..
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 233455553 479999999998654
No 466
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=91.14 E-value=0.23 Score=59.14 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=35.9
Q ss_pred ccccchHHHHHHHHHHHh--cCCceEEEEEcCCcchHHHHHHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQ 200 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~--~~~~~~i~I~G~gG~GKTtLa~~~~~~ 200 (1728)
..++|+...+.++.+.+. .....-|.|+|..|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 357888888888887776 233457899999999999999998754
No 467
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.05 E-value=0.19 Score=57.86 Aligned_cols=88 Identities=17% Similarity=0.302 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHH
Q 000280 166 QNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQR 245 (1728)
Q Consensus 166 ~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 245 (1728)
..+++.+...+ +-|.++|+.|+|||++++.+....... .| .+.-++.+...+...++..+-..+.....
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~-~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~-------- 91 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSD-KY-LVITINFSAQTTSNQLQKIIESKLEKRRG-------- 91 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTC-CE-EEEEEES-TTHHHHHHHHCCCTTECECTT--------
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCcc-cc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC--------
Confidence 34566666554 567999999999999999988654211 11 13345555544444443322111111000
Q ss_pred HHHHHHHH--HcCCcEEEEEeCCCCc
Q 000280 246 AEKLRQRL--KNVKRVLVILDNIWKL 269 (1728)
Q Consensus 246 ~~~l~~~l--~~~~~~LlVlDdv~~~ 269 (1728)
+.+ ..+++.++.+||+.-.
T Consensus 92 -----~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 92 -----RVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp -----EEEEEESSSEEEEEEETTT-S
T ss_pred -----CCCCCCCCcEEEEEecccCCC
Confidence 000 1258899999998554
No 468
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=90.96 E-value=0.67 Score=57.01 Aligned_cols=92 Identities=21% Similarity=0.160 Sum_probs=59.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhcc-C-CCeeEEEEECCCC-CHHHHHHHHHHHhhhhh------ccCCCHHH----
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDK-L-FDKVVFVEVTQTP-DLQTIQNKLSSDLELEF------KQNENVFQ---- 244 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~-~-f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~---- 244 (1728)
..++|.|-.|+|||||+.+++++...++ . =-.++++-+++.. .+.++.+++...=.... ...+....
T Consensus 144 QR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 223 (460)
T PRK04196 144 QKLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILT 223 (460)
T ss_pred CEEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHH
Confidence 5789999999999999999998875321 0 0157888887765 46777776665422110 00112111
Q ss_pred --HHHHHHHHHH--cCCcEEEEEeCCCCc
Q 000280 245 --RAEKLRQRLK--NVKRVLVILDNIWKL 269 (1728)
Q Consensus 245 --~~~~l~~~l~--~~~~~LlVlDdv~~~ 269 (1728)
.+..+.++++ +++++|+|+||+-..
T Consensus 224 ~~~a~tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 224 PRMALTAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEcChHHH
Confidence 2345667776 579999999998554
No 469
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=90.93 E-value=0.3 Score=56.91 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=30.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCC
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTP 219 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 219 (1728)
+.|+|+|-||+||||+|..++.....++ + .|+-|+.....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D~q~ 40 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCDPKA 40 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCCCC
Confidence 4689999999999999999999886443 2 45556655443
No 470
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=90.93 E-value=5.1 Score=46.23 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcCCc-eEEEEEcCCcchHHHHHHHHHHHHHhcc--------------------CCCeeEEEEEC-CCC
Q 000280 162 MKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK--------------------LFDKVVFVEVT-QTP 219 (1728)
Q Consensus 162 ~~~~~~l~~~L~~~~~-~~i~I~G~gG~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~-~~~ 219 (1728)
...++.+..++..+++ +...++| |+||+++|+.++...--.+ |.| +.|+.-. ...
T Consensus 8 ~~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD-~~~i~p~~~~I 84 (290)
T PRK07276 8 PKVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD-VTVIEPQGQVI 84 (290)
T ss_pred HHHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-eeeecCCCCcC
Confidence 3455666666665554 4666777 6899999999988653211 111 2222110 001
Q ss_pred CHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccCCCcccccccCCCCCCe
Q 000280 220 DLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRC 293 (1728)
Q Consensus 220 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g~ 293 (1728)
. .+.+..+.+.+. .+++-++|+|+++... ..+.+...+.+ -..++
T Consensus 85 ~----------------------idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE-------Pp~~t 135 (290)
T PRK07276 85 K----------------------TDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE-------PQSEI 135 (290)
T ss_pred C----------------------HHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC-------CCCCe
Confidence 1 122223333332 2567799999998873 34444333333 23345
Q ss_pred EEEEEeCCc-hhhcccCCCccEEEccCCCHHHHHHHHH
Q 000280 294 TVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFE 330 (1728)
Q Consensus 294 ~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~ 330 (1728)
.+|++|.+. .+..........+.+.+ +.++..+.+.
T Consensus 136 ~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 136 YIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 666666544 45443333455777766 6666556554
No 471
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=0.55 Score=50.52 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCcEEEEEeCCCCccccccccCCCcccccccCCCCCCeEEEEEeCCchhhcc
Q 000280 247 EKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN 307 (1728)
Q Consensus 247 ~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~ 307 (1728)
.++.+.+. -++-+.|||..++-.|.+.+... ...+..+ ...|+-++|.|..+.++..
T Consensus 153 ~EilQ~~~-lePkl~ILDE~DSGLDIdalk~V-~~~i~~l--r~~~~~~liITHy~rll~~ 209 (251)
T COG0396 153 NEILQLLL-LEPKLAILDEPDSGLDIDALKIV-AEGINAL--REEGRGVLIITHYQRLLDY 209 (251)
T ss_pred HHHHHHHh-cCCCEEEecCCCcCccHHHHHHH-HHHHHHH--hcCCCeEEEEecHHHHHhh
Confidence 44555554 47889999999998777665431 1111122 2346678888888888773
No 472
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=90.89 E-value=0.77 Score=62.09 Aligned_cols=176 Identities=17% Similarity=0.195 Sum_probs=91.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCC---CeeEEEEECCCC----CHH--HHHHHHHHHhhhhhccCCCHHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLF---DKVVFVEVTQTP----DLQ--TIQNKLSSDLELEFKQNENVFQRAEK 248 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~~----~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~ 248 (1728)
..+.|+|.+|+||||+...++-....+ .+ +..+++.+.... ... .+..-+...+..... .......
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~-~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~~~ 297 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQR-TLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLIEA 297 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccC-cCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhhHH
Confidence 489999999999999999999877543 32 234454443111 111 122222222222111 1111111
Q ss_pred HHHHHHcCCcEEEEEeCCCCccc------cccccCCCcccccccCCCCCCeEEEEEeCCchhhcccCCCccEEEccCCCH
Q 000280 249 LRQRLKNVKRVLVILDNIWKLLN------LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFFLIEVLSY 322 (1728)
Q Consensus 249 l~~~l~~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~v~~~~~~~~~~~~l~~L~~ 322 (1728)
..+.++ ..++++++|.++.... ...+...++ .-+.+++|+|+|....-. .......+.+..+.+
T Consensus 298 ~~e~l~-~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~--------~~~~~~~iltcR~~~~~~-~~~~f~~~ei~~~~~ 367 (824)
T COG5635 298 HQELLK-TGKLLLLLDGLDELEPKNQRALIREINKFLQ--------EYPDAQVLLTCRPDTYKE-EFKGFAVFEIYKFLD 367 (824)
T ss_pred HHHHHh-ccchhhHhhccchhhhhhHHHHHHHHHHHhh--------hccCCeEEEEeccchhhh-hhhhhhhccchhhhH
Confidence 134444 7999999999877621 112222222 345688999998775544 233345566666666
Q ss_pred HHHHHHHH-----HHh----CCCCCC--CchHHH---HHHHHHHhCCChHHHHHHHHHHh
Q 000280 323 EEAWCLFE-----KIV----GDSAKA--SDFRVI---ADEIVRRCGGLPVAIKTIANALK 368 (1728)
Q Consensus 323 ~ea~~Lf~-----~~~----~~~~~~--~~~~~~---~~~i~~~c~glPLai~~~a~~L~ 368 (1728)
+.-..... ... +..... .....+ ...-.+.....|+++.+.+..-.
T Consensus 368 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 368 LQINQFILYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 55432222 111 111111 011111 12233444888999999985544
No 473
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=90.85 E-value=0.077 Score=57.47 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEEcCCcchHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQ 200 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~ 200 (1728)
++.|+|..|.||||+.+.++-.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999843
No 474
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.84 E-value=0.51 Score=57.27 Aligned_cols=88 Identities=22% Similarity=0.349 Sum_probs=51.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECC-CCCHHHHHHHHHHHhhhhh------ccCCCHHH------
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ-TPDLQTIQNKLSSDLELEF------KQNENVFQ------ 244 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~------~~~~~~~~------ 244 (1728)
..++|+|..|+|||||++.++...+ .+..+.+.+.+ ..++.++.++.+..-+... ..++....
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 5899999999999999998887652 23333333333 3346666655444322110 00121111
Q ss_pred HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 000280 245 RAEKLRQRLK-NVKRVLVILDNIWKL 269 (1728)
Q Consensus 245 ~~~~l~~~l~-~~~~~LlVlDdv~~~ 269 (1728)
.+-.+.+++. +++++|+++||+-..
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhHH
Confidence 2233555554 479999999998654
No 475
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=90.82 E-value=0.24 Score=53.27 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=22.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
+|+|.|..|+||||+|+.++....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998875
No 476
>PRK06217 hypothetical protein; Validated
Probab=90.82 E-value=0.2 Score=54.23 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=22.0
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
.|.|.|.+|+||||+|+++++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998763
No 477
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=90.75 E-value=0.68 Score=48.54 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=62.5
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCee-E-EEEECCCCCHHHHHHHHHH---Hhhhh--hccCC--CHHH---
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKV-V-FVEVTQTPDLQTIQNKLSS---DLELE--FKQNE--NVFQ--- 244 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~-~-wv~~~~~~~~~~~~~~i~~---~l~~~--~~~~~--~~~~--- 244 (1728)
...|-|++..|.||||.|...+-+..-. .+... + |+.-.........+..+.- +++.. +.... ....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 3688899999999999999999888532 23221 1 3433322233333333200 01110 00001 1111
Q ss_pred -HHHHHHHHHHcCCcEEEEEeCCCCcccc-----ccccCCCcccccccCCCCCCeEEEEEeCCch
Q 000280 245 -RAEKLRQRLKNVKRVLVILDNIWKLLNL-----DAVGIPFGDVKKERNDDRSRCTVLLTSRNRD 303 (1728)
Q Consensus 245 -~~~~l~~~l~~~~~~LlVlDdv~~~~~~-----~~l~~~~~~~~~~~~~~~~g~~ilvTtR~~~ 303 (1728)
.....++.+..+.-=|+|||.+-....+ +.+...+.. ...+..||+|-|+..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~-------rp~~~evVlTGR~~p 141 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE-------RPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh-------CCCCCEEEEECCCCC
Confidence 2223344444455669999998654322 233222222 455678999999873
No 478
>PF13479 AAA_24: AAA domain
Probab=90.69 E-value=0.65 Score=51.56 Aligned_cols=31 Identities=35% Similarity=0.543 Sum_probs=25.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCC
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQT 218 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 218 (1728)
-.+.|+|.+|+||||+|..+ +..++++....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 46899999999999999866 55677777655
No 479
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=1.5 Score=57.54 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=65.4
Q ss_pred ccccchHHHHHHHHHHHhc-------C-CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLKD-------T-NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNK 227 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~-------~-~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 227 (1728)
..++|.++.+..|.+++.. + ......+.|+.|+|||.||++++...- +..+..+-|+.++ ..+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhh------hhh-
Confidence 3467888888888888872 1 355788999999999999999998872 1223344444333 332
Q ss_pred HHHHhhhhhccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 000280 228 LSSDLELEFKQNENVFQRAEKLRQRLKNVKRVLVILDNIWKL 269 (1728)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 269 (1728)
+.+..+.+.. -... +....+.+.+++....+|+||||+..
T Consensus 633 vskligsp~g-yvG~-e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 VSKLIGSPPG-YVGK-EEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhhccCCCcc-cccc-hhHHHHHHHHhcCCceEEEEechhhc
Confidence 3333333221 1111 22236677777667778888999876
No 480
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.65 E-value=0.18 Score=52.26 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
+|.|.|..|+||||+|+.++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 481
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=90.64 E-value=0.5 Score=50.07 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=44.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhc---cCCCHHHHHHHHHHHHHc
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFK---QNENVFQRAEKLRQRLKN 255 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~ 255 (1728)
+|.|.|.+|+||||+|..++.... ..++++.-.... -.+..+.|......... .-+...+....+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~-----~~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~- 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG-----LQVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA- 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC-----CCcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC-
Confidence 689999999999999999987642 124455444433 33455555444332211 11112223333322222
Q ss_pred CCcEEEEEeCCCC
Q 000280 256 VKRVLVILDNIWK 268 (1728)
Q Consensus 256 ~~~~LlVlDdv~~ 268 (1728)
+.-++++|.+..
T Consensus 76 -~~~~VlID~Lt~ 87 (170)
T PRK05800 76 -PGRCVLVDCLTT 87 (170)
T ss_pred -CCCEEEehhHHH
Confidence 233788898643
No 482
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=90.62 E-value=0.2 Score=53.32 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
.|.|.|.+|+||||+|+.+++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999853
No 483
>PRK14529 adenylate kinase; Provisional
Probab=90.61 E-value=0.68 Score=51.18 Aligned_cols=85 Identities=14% Similarity=0.044 Sum_probs=46.0
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHHhccCCCe--eEEEEECCCCCHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHcC
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK--VVFVEVTQTPDLQTIQNKLSSDLELEFKQNENVFQRAEKLRQRLKNV 256 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 256 (1728)
.|.|.|++|+||||+|+.++...... +... ++.-.+.......+..++++..-. ....+-....+.+++.+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~-----lvpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGD-----LVPDDITIPMILETLKQD 75 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccC-----cchHHHHHHHHHHHHhcc
Confidence 37899999999999999999887422 2211 111112222223333333332211 122233445567777643
Q ss_pred CcEEEEEeCCCCc
Q 000280 257 KRVLVILDNIWKL 269 (1728)
Q Consensus 257 ~~~LlVlDdv~~~ 269 (1728)
...=+|||..=..
T Consensus 76 ~~~g~iLDGfPRt 88 (223)
T PRK14529 76 GKNGWLLDGFPRN 88 (223)
T ss_pred CCCcEEEeCCCCC
Confidence 3456889986443
No 484
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=90.57 E-value=0.31 Score=57.60 Aligned_cols=49 Identities=14% Similarity=0.288 Sum_probs=42.6
Q ss_pred ccccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHH
Q 000280 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1728)
Q Consensus 154 ~~~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~ 202 (1728)
+...++|.++.+..|.-.+.++...-|.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3566899999888888888888888888999999999999999988664
No 485
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.55 E-value=0.16 Score=30.54 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=6.6
Q ss_pred CCceeecCCCCCCccc
Q 000280 606 KLEILSFRNSDIQQLP 621 (1728)
Q Consensus 606 ~L~~L~Ls~~~i~~LP 621 (1728)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555554
No 486
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=90.54 E-value=0.28 Score=51.55 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=25.0
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHh
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~ 203 (1728)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999998854
No 487
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=90.51 E-value=0.72 Score=53.98 Aligned_cols=89 Identities=21% Similarity=0.322 Sum_probs=53.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECC-CCCHHHHHHHHHHHhhhhh------ccCCCHHH-----
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQ-TPDLQTIQNKLSSDLELEF------KQNENVFQ----- 244 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~------~~~~~~~~----- 244 (1728)
-..++|+|..|+|||||++.++.... .+..+..-+.. ..++.++.......-+... ..++....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35889999999999999999887653 33444454543 3356666655554422110 00121111
Q ss_pred -HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 000280 245 -RAEKLRQRLK-NVKRVLVILDNIWKL 269 (1728)
Q Consensus 245 -~~~~l~~~l~-~~~~~LlVlDdv~~~ 269 (1728)
.+-.+.+++. +++++|+++||+-..
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 2233445553 479999999997554
No 488
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=90.48 E-value=0.13 Score=56.84 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQ 200 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~ 200 (1728)
.+++|+|..|.||||+.+.++..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 69999999999999999999843
No 489
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=90.41 E-value=0.22 Score=53.50 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=22.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
++|.+.|++|+||||+|+++....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 490
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.36 E-value=0.18 Score=55.42 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=21.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
+|+|.|..|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 491
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=90.36 E-value=1.3 Score=54.25 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=53.8
Q ss_pred eEEEEEcCCcchHHHHHHH-HHHHHHhccCCCee-EEEEECCCC-CHHHHHHHHHHHhhhhh------ccCCCHHHH---
Q 000280 178 GMIGVYGVNGVGKTTLVKQ-IAMQVIEDKLFDKV-VFVEVTQTP-DLQTIQNKLSSDLELEF------KQNENVFQR--- 245 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~-~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~~--- 245 (1728)
..++|.|..|+||||||.. +++.. .-|.+ +++-+++.. ++.++.+.+...=.... ...+....+
T Consensus 142 QR~~I~g~~g~GKt~Lal~~I~~q~----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~a 217 (485)
T CHL00059 142 QRELIIGDRQTGKTAVATDTILNQK----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLA 217 (485)
T ss_pred CEEEeecCCCCCHHHHHHHHHHhcc----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHH
Confidence 5789999999999999654 44432 24554 888888665 46667666654322110 011111111
Q ss_pred ---HHHHHHHHH-cCCcEEEEEeCCCCc
Q 000280 246 ---AEKLRQRLK-NVKRVLVILDNIWKL 269 (1728)
Q Consensus 246 ---~~~l~~~l~-~~~~~LlVlDdv~~~ 269 (1728)
+..+.+++. +++++|+|+||+...
T Consensus 218 p~~a~aiAEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 218 PYTGAALAEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHhhHHHHHHHcCCCEEEEEcChhHH
Confidence 223444554 469999999998654
No 492
>PRK13947 shikimate kinase; Provisional
Probab=90.35 E-value=0.21 Score=53.38 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=21.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
.|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 493
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=90.33 E-value=0.19 Score=52.36 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=20.4
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
+|.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998864
No 494
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.29 E-value=0.96 Score=57.14 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=52.4
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhcc-----------------
Q 000280 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQ----------------- 238 (1728)
Q Consensus 176 ~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------------- 238 (1728)
.-+++.|.|.+|+||||+|.+++..-..+ .=+.++||+..+. ..++.+. +..++....+
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE~--~~~l~~~-~~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEES--PQDIIKN-ARSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEecC--HHHHHHH-HHHcCCCHHHHhhcCceEEEecCchhc
Confidence 34799999999999999999997664221 1257889988643 3444333 3344332210
Q ss_pred ------CCCHHHHHHHHHHHHHcCCcEEEEEeCC
Q 000280 239 ------NENVFQRAEKLRQRLKNVKRVLVILDNI 266 (1728)
Q Consensus 239 ------~~~~~~~~~~l~~~l~~~~~~LlVlDdv 266 (1728)
.-+.......+.+.+..+++-.+|+|-+
T Consensus 96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred cccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 1123344455555555556666777743
No 495
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=90.24 E-value=0.23 Score=53.58 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHH
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
.+++|.|+.|+||||+|+.++...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 496
>PRK00279 adk adenylate kinase; Reviewed
Probab=90.20 E-value=1.2 Score=49.60 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=21.0
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 000280 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 179 ~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
.|.|+|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998775
No 497
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=90.19 E-value=0.65 Score=51.34 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 175 TNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 175 ~~~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
+....|+|+|.+|+|||||...+....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 456799999999999999999998764
No 498
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=90.17 E-value=0.28 Score=49.67 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.5
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHHH
Q 000280 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1728)
Q Consensus 177 ~~~i~I~G~gG~GKTtLa~~~~~~~ 201 (1728)
.++|+|+|.+|+||||+.+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4799999999999999999888776
No 499
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=90.16 E-value=0.92 Score=58.02 Aligned_cols=85 Identities=20% Similarity=0.261 Sum_probs=0.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHHHHHHHHhhhhhccCC-----------------
Q 000280 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQNKLSSDLELEFKQNE----------------- 240 (1728)
Q Consensus 178 ~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~----------------- 240 (1728)
+++.|.|.+|+|||++|.+++.... .++-..++||+... +..++.+.+.. ++.+..+-.
T Consensus 32 s~~li~G~pGsGKT~l~~qf~~~~~-~~~ge~~lyis~ee--~~~~i~~~~~~-~g~d~~~~~~~g~l~~~~~~~~~~~~ 107 (509)
T PRK09302 32 RPTLVSGTAGTGKTLFALQFLVNGI-KRFDEPGVFVTFEE--SPEDIIRNVAS-FGWDLQKLIDEGKLFILDASPDPSEQ 107 (509)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCCEEEEEccC--CHHHHHHHHHH-cCCCHHHHhhCCeEEEEecCcccccc
Q ss_pred ------CHHHHHHHHHHHHHcCCcEEEEEeCC
Q 000280 241 ------NVFQRAEKLRQRLKNVKRVLVILDNI 266 (1728)
Q Consensus 241 ------~~~~~~~~l~~~l~~~~~~LlVlDdv 266 (1728)
+.......+.+.+.+.+.-.+|+|.+
T Consensus 108 ~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSl 139 (509)
T PRK09302 108 EEAGEYDLEALFIRIEYAIDKIGAKRVVLDSI 139 (509)
T ss_pred cccccccHHHHHHHHHHHHHhhCCCEEEECCH
No 500
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=90.15 E-value=0.94 Score=52.69 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=43.4
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCcchHHHHHHHHHHHHHhccCCCeeEEEEECCCCCHHHHH
Q 000280 156 EQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVEVTQTPDLQTIQ 225 (1728)
Q Consensus 156 ~~~~gR~~~~~~l~~~L~~~~~~~i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 225 (1728)
..|+=+.+....++.++... +.|.|.|..|+||||+|++++.... .. .+.|......+..++.
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~----~~-~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLN----WP-CVRVNLDSHVSRIDLV 107 (327)
T ss_pred CCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHC----CC-eEEEEecCCCChhhcC
Confidence 34555555666677777543 4699999999999999999999873 11 3456666655554443
Done!