Query 000280
Match_columns 1728
No_of_seqs 646 out of 6601
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 19:08:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000280.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_56-60//hhsearch_pdb/000280hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 412.0 16.4 308 159-497 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 373.6 27.2 314 151-495 119-452 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 338.2 21.2 282 158-488 130-436 (1221)
4 3rgz_A Protein brassinosteroid 1.0 1 1 328.5 34.4 109 556-665 73-190 (768)
5 3rgz_A Protein brassinosteroid 1.0 1 1 316.9 32.1 293 559-973 49-354 (768)
6 1z6t_A APAF-1, apoptotic prote 1.0 1 1 311.5 30.0 309 152-493 120-450 (591)
7 1ziw_A TOLL-like receptor 3; i 1.0 1 1 291.6 34.6 128 560-696 25-156 (680)
8 1ziw_A TOLL-like receptor 3; i 1.0 1 1 285.9 37.6 172 516-699 8-185 (680)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 274.0 33.3 104 561-665 34-141 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 273.7 31.9 130 560-697 32-165 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=411.96 Aligned_cols=308 Identities=14% Similarity=0.174 Sum_probs=248.9
Q ss_pred CCHHHHHHHHHHHHHCC---CCEEEEEECCCCCHHHHHHHHHHH--HHHHCCCCCEEEEEEECCCC--CHHHHHHHHHHH
Q ss_conf 32399999999998339---955999992796508999999999--98750379816999978898--989999999997
Q 000280 159 DSRMKIFQNIMEVLKDT---NVGMIGVYGVNGVGKTTLVKQIAM--QVIEDKLFDKVVFVEVTQTP--DLQTIQNKLSSD 231 (1728)
Q Consensus 159 ~gR~~~~~~i~~~L~~~---~~~vi~I~G~gGvGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~l~~~i~~~ 231 (1728)
+||+.++++|.++|.++ ..++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 78417999999987251578962899986999988999999998406987466995799997898787999999999999
Q ss_pred HHHHHC-------CCCCHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCH
Q ss_conf 311000-------49899999999999998388-1999995988743334226887664323689999809999818710
Q 000280 232 LELEFK-------QNENVFQRAEKLRQRLKNVK-RVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD 303 (1728)
Q Consensus 232 l~~~~~-------~~~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~iivTtR~~~ 303 (1728)
++.... ...+.......+.+.+. ++ |+||||||||+..++ . ++ ...||+||||||+..
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-~----~~--------~~~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-R----WA--------QELRLRCLVTTRDVE 276 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-H----HH--------HHTTCEEEEEESBGG
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCHHH-C----CC--------CCCCCEEEEECCCHH
T ss_conf 853755345555331469999999999976-898489999799971441-5----43--------269988999749779
Q ss_pred HHCCCCC-CCCEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 1101489-841798158999999999999849999988328999999999199928999999998149904699999999
Q 000280 304 VLCNDMN-SQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWNDSLERL 382 (1728)
Q Consensus 304 v~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ia~~L~~~~~~~w~~~l~~l 382 (1728)
++. .++ ....|++++|+++|||+||.+.++.....+++++++.+|+++|+|+||||+++|+.++.+ .|+.+ +.+
T Consensus 277 v~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~---~w~~~-~~l 351 (549)
T 2a5y_B 277 ISN-AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK---TFEKM-AQL 351 (549)
T ss_dssp GGG-GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS---SHHHH-HHH
T ss_pred HHH-HCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC---HHHHH-HHH
T ss_conf 999-7088973898999898999999998744899855689999999999599839999999984434---48999-875
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCCCCC--
Q ss_conf 402321025542668989988571178426999987-----------62344788875988999998750--766676--
Q 000280 383 RNSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFR-----------LCALRKDGSPIPIDDLMRYGIGL--GLFSNV-- 447 (1728)
Q Consensus 383 ~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~~fl-----------~~a~fp~~~~i~~~~Li~~w~~~--g~~~~~-- 447 (1728)
.... +.. ....+..++.+||+.||++ +|.||+ |||+||+++.|+ +++|+|+ |++...
T Consensus 352 ~~~l-~~~--~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~ 423 (549)
T 2a5y_B 352 NNKL-ESR--GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEE 423 (549)
T ss_dssp HHHH-HHH--CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------
T ss_pred HHHH-HCC--CHHHHHHHHHCCCCCCCHH-HHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCC
T ss_conf 7876-136--4777898975162022679-99997526522336743235608997666----53311013550026778
Q ss_pred -CCHHHHHHHHHHHHHHHHHCCCCCCCCC---CCEEECHHHHHHHHHHHCCCCE
Q ss_conf -4389999899999999874244323898---9199828999999998602575
Q 000280 448 -RTSEAARNRVYTLVDNLKASSLLLDGDK---DEVKLHDIIYAVAVSIARDEFM 497 (1728)
Q Consensus 448 -~~~~~~~~~~~~~i~~L~~~~ll~~~~~---~~~~mHdlvr~~a~~~~~~~~~ 497 (1728)
.+.+++.+ ++++|+++||++.... .+|+|||+||+||++++.+++.
T Consensus 424 ~~~~~~~~~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 424 EQLDDEVAD----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCCTHHHHH----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCCHHHHHH----HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 999999999----99999875883671479804999676999999999889899
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=373.55 Aligned_cols=314 Identities=22% Similarity=0.317 Sum_probs=252.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCCCCHHHHHHHHHHHHHHH-CCCC-CEEEEEEECCCCC--HHHH
Q ss_conf 66764443323999999999983--399559999927965089999999999875-0379-8169999788989--8999
Q 000280 151 SYTAYEQFDSRMKIFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIE-DKLF-DKVVFVEVTQTPD--LQTI 224 (1728)
Q Consensus 151 ~~~~~~~~~gR~~~~~~i~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~l 224 (1728)
.|.+...|+||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHH
T ss_conf 79998641257999999999986135887779999189888889999986075678862788179999788572679999
Q ss_pred HHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 9999997311000----49899999999999998388--19999959887433342268876643236899998099998
Q 000280 225 QNKLSSDLELEFK----QNENVFQRAEKLRQRLKNVK--RVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLT 298 (1728)
Q Consensus 225 ~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~iivT 298 (1728)
+..++..++.... ...........++..+. ++ |+||||||||+..+|+.+ ..||+||||
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~LlvlDd~~~~~~~~~~--------------~~~~~ilvT 263 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLML-RKHPRSLLILDDVWDPWVLKAF--------------DNQCQILLT 263 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS-SSSCSCEEEEESCCCHHHHTTT--------------CSSCEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCCEEEEEECCCCHHHHHHH--------------CCCCEEEEE
T ss_conf 9999998655303334788777899999999973-5678789999567997788763--------------689789999
Q ss_pred ECCCHHHCCCCCCCCEEECCC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 187101101489841798158-9999999999998499999883289999999991999289999999981499046999
Q 000280 299 SRNRDVLCNDMNSQKFFLIEV-LSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWND 377 (1728)
Q Consensus 299 tR~~~v~~~~~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ia~~L~~~~~~~w~~ 377 (1728)
||++.++...+.....+.+++ |+++||++||...++. ..+..++.+++|+++|+|+||||+++|+.|+.+. ..|++
T Consensus 264 tR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~ 340 (1249)
T 3sfz_A 264 TRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAY 340 (1249)
T ss_dssp ESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHH
T ss_pred CCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCC--CHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHH
T ss_conf 27789987634884379825888878899999986579--8134838899999984997799999999862480-57999
Q ss_pred HHHHHHCCCCCCCC----CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 99999402321025----54266898998857117842699998762344788875988999998750766676438999
Q 000280 378 SLERLRNSTSRQIH----GMEENVYSSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAA 453 (1728)
Q Consensus 378 ~l~~l~~~~~~~~~----~~~~~i~~~l~~sy~~L~~~~lk~~fl~~a~fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~ 453 (1728)
+++++......... .....+..++.+||+.|+++ +|.||+|||+||+++.|+.+.++.+|.+++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~----------- 408 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET----------- 408 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH-----------
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHH-HHHHHHHHCCCCCCCEECHHHHHHHHCCCH-----------
T ss_conf 99998650443034655644677999999899867999-999999728137997518999998858988-----------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC---CCEEECHHHHHHHHHHHCCC
Q ss_conf 9899999999874244323898---91998289999999986025
Q 000280 454 RNRVYTLVDNLKASSLLLDGDK---DEVKLHDIIYAVAVSIARDE 495 (1728)
Q Consensus 454 ~~~~~~~i~~L~~~~ll~~~~~---~~~~mHdlvr~~a~~~~~~~ 495 (1728)
..+..++++|++++|++.... .+|+|||+||+|++.++.++
T Consensus 409 -~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 -EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred -HHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf -89999999997446338963798118996689999987450678
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=338.20 Aligned_cols=282 Identities=19% Similarity=0.216 Sum_probs=223.6
Q ss_pred CCCHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 33239999999999833-99559999927965089999999999875037981-69999788989899999999973110
Q 000280 158 FDSRMKIFQNIMEVLKD-TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK-VVFVEVTQTPDLQTIQNKLSSDLELE 235 (1728)
Q Consensus 158 ~~gR~~~~~~i~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~l~~~i~~~l~~~ 235 (1728)
.+||+.++++|.++|.+ +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++..++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 78928999999999743589718999769996679999999971498874899389998289999999999999998622
Q ss_pred HC---CC----C----CHHHHHHHHHHHHH--CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 00---49----8----99999999999998--388199999598874333422688766432368999980999981871
Q 000280 236 FK---QN----E----NVFQRAEKLRQRLK--NVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR 302 (1728)
Q Consensus 236 ~~---~~----~----~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~iivTtR~~ 302 (1728)
.. .. . +.......+.+.+. .++|+||||||||+...|+.+. .||+||||||++
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~--------------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--------------LSCKILLTTRFK 275 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH--------------SSCCEEEECSCS
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC--------------CCEEEEEECCCH
T ss_conf 721022001346799999999999999998504788799871868189998647--------------982999944373
Q ss_pred HHHCCCCCCCCEEECC------CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC--CHH
Q ss_conf 0110148984179815------89999999999998499999883289999999991999289999999981499--046
Q 000280 303 DVLCNDMNSQKFFLIE------VLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKR--LYV 374 (1728)
Q Consensus 303 ~v~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ia~~L~~~~--~~~ 374 (1728)
.++. .+.....++++ +|+++|||+||.+..+.. ..++..+ .|+|+||||+++|+.|+.+. ...
T Consensus 276 ~Va~-~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHH-HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHH-HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC-----HHHHHHH---HHCCCHHHHHHHHHHHHCCCCCHHH
T ss_conf 7998-66897089946865568969999999999974998-----8999999---9698999999999998488997999
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 999999994023210255426689899885711784269-9998762344788875988999998750766676438999
Q 000280 375 WNDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEE-KSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAA 453 (1728)
Q Consensus 375 w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~l-k~~fl~~a~fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~ 453 (1728)
|+.. . ...+..+|++||+.|+++ . |.||++||+||+++.|+.+.++.+|+++|. +
T Consensus 347 W~~~-------~-------~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e-- 402 (1221)
T 1vt4_I 347 WKHV-------N-------CDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S-- 402 (1221)
T ss_dssp HHHC-------S-------CHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H--
T ss_pred HHCC-------C-------HHHHHHHHHHHHHHCCHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCH-------H--
T ss_conf 8669-------8-------618999999999848899-99999999717799998779999987667788-------9--
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC-CCEEECHHHHHHH
Q ss_conf 9899999999874244323898-9199828999999
Q 000280 454 RNRVYTLVDNLKASSLLLDGDK-DEVKLHDIIYAVA 488 (1728)
Q Consensus 454 ~~~~~~~i~~L~~~~ll~~~~~-~~~~mHdlvr~~a 488 (1728)
.+..++++|+++||++..+. .+|+|||++++++
T Consensus 403 --dAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 --DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp --HHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred --HHHHHHHHHHHHCCEEEECCCCEEEEHHHHHHHH
T ss_conf --9999999999619889868999898609999985
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=328.50 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=49.8
Q ss_pred HCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCC--CC--CCCCCCCCCEEECCCCCCC-CCCHHH-HCCCC
Q ss_conf 507986519984576755568444698765499814865899--20--0013357855643888888-664674-23555
Q 000280 556 FEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD--VA--IVGQLKKLEILSFRNSDIQ-QLPREI-GQLVQ 629 (1728)
Q Consensus 556 f~~~~~LrvL~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~--~~--~i~~L~~L~~L~L~~~~i~-~LP~~i-~~L~~ 629 (1728)
|..+++|++++++.+.+..+|..|+.+.+|++|+|++|.+.. |. .++++.+|++|++++|.+. ..|..+ .++++
T Consensus 73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 73168022467868886787033245788998989898578707896787278899989896882677479778563889
Q ss_pred CCEEECCCCCCCCCCCCCC---CCCCCCCCEECCCCCCC
Q ss_conf 6398023764311349610---03476544002588744
Q 000280 630 LRLLDLRNCRRLQAIAPNV---ISKLSRLEELYMGDSFS 665 (1728)
Q Consensus 630 L~~L~l~~~~~l~~ip~~~---i~~L~~L~~L~l~~~~~ 665 (1728)
|++|++++| .+...+... ++++++|++|++.+|.+
T Consensus 153 L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 190 (768)
T 3rgz_A 153 LEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKI 190 (768)
T ss_dssp CSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEE
T ss_pred CCEEECCCC-CCCCCCCHHHHHHCCCCCCCEEECCCCCC
T ss_conf 998989798-35885871556643589889898978803
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=316.94 Aligned_cols=293 Identities=17% Similarity=0.152 Sum_probs=168.2
Q ss_pred CCCCEEEEECCCCCCC----CCCCCCCCCCCCEEEECCCCCC-CCCCCCCCCCCCEEECCCCCCC-CCCH--HHHCCCCC
Q ss_conf 9865199845767555----6844469876549981486589-9200013357855643888888-6646--74235556
Q 000280 559 MNELRVVHFTRTCFLS----LPSSLVCLISLRTLSLEGCQVG-DVAIVGQLKKLEILSFRNSDIQ-QLPR--EIGQLVQL 630 (1728)
Q Consensus 559 ~~~LrvL~Ls~~~i~~----lp~~i~~L~~Lr~L~L~~~~i~-~~~~i~~L~~L~~L~L~~~~i~-~LP~--~i~~L~~L 630 (1728)
..+++.|+|++..+.. +|.++..|.+|++++++.+.+. .+..++.+.+|++|++++|.+. .+|. .++++++|
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf 99278987789986775576696573168022467868886787033245788998989898578707896787278899
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHH---HCCCCCCCEEEEEECCCCCCCHHHHCC
Q ss_conf 39802376431134961003476544002588744321123877655463---149999986899824544676010001
Q 000280 631 RLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVE---LKGLSKLTTLEIHIRDARIMPQDLISM 707 (1728)
Q Consensus 631 ~~L~l~~~~~l~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~---L~~L~~L~~L~l~~~~~~~~~~~~~~~ 707 (1728)
++|++++|.....+|...++++++|++|++++|.+. ...+.. ++++++|+.|+++.+.......
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----- 195 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS--------GANVVGWVLSDGCGELKHLAISGNKISGDVD----- 195 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE--------EETHHHHHHTTCCTTCCEEECCSSEEESCCB-----
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC--------CCCCHHHHHHCCCCCCCEEECCCCCCCCCCC-----
T ss_conf 989896882677479778563889998989798358--------8587155664358988989897880346578-----
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 22325899720102555444443586325664021235577764024635742457821223344763453468489663
Q 000280 708 KLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVE 787 (1728)
Q Consensus 708 ~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~ 787 (1728)
...+++|++|.+.
T Consensus 196 -------------------------------------------------------------------~~~l~~L~~L~Ls 208 (768)
T 3rgz_A 196 -------------------------------------------------------------------VSRCVNLEFLDVS 208 (768)
T ss_dssp -------------------------------------------------------------------CTTCTTCCEEECC
T ss_pred -------------------------------------------------------------------CCCCCCCCEEECC
T ss_conf -------------------------------------------------------------------4547868989892
Q ss_pred ECCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCE
Q ss_conf 03550351345574345678764452125434532-00235787886579833999811688567788788854247664
Q 000280 788 HSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLE-KICHNRLHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQK 866 (1728)
Q Consensus 788 ~~~~l~~i~~~~~~~~~~~fp~L~~L~L~~~~~L~-~i~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~ 866 (1728)
++.....++. ...+++|++|++.++. +. .++. ..+.+++|++|.+++|.-...+|.. .+++|++
T Consensus 209 ~n~l~~~~~~------l~~l~~L~~L~Ls~n~-l~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~ 273 (768)
T 3rgz_A 209 SNNFSTGIPF------LGDCSALQHLDISGNK-LSGDFSR----AISTCTELKLLNISSNQFVGPIPPL----PLKSLQY 273 (768)
T ss_dssp SSCCCSCCCB------CTTCCSCCEEECCSSC-CCSCHHH----HTTTCSSCCEEECCSSCCEESCCCC----CCTTCCE
T ss_pred CCCCCCCCCC------CCCCCCCCEEECCCCC-CCCCCCH----HHHCCCCCCEEECCCCCCCCCCCCC----CCCCCCE
T ss_conf 8827887711------1269999989794885-8781657----7744888898989888665716724----3687898
Q ss_pred EEECCCCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCCE-ECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 885135463000023454412203325754579999810-0133450112221142323877766888766752898634
Q 000280 867 ISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKV-IFPSLEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAF 945 (1728)
Q Consensus 867 L~i~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~l~~i~~~~~~~~~~l~~L~~L~l~~ 945 (1728)
|++++|.....++ .... .+++|++|++++| .+....+..+ ..+++|+.|++.+
T Consensus 274 L~L~~n~l~~~ip----------------------~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~---~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 274 LSLAENKFTGEIP----------------------DFLSGACDTLTGLDLSGN-HFYGAVPPFF---GSCSLLESLALSS 327 (768)
T ss_dssp EECCSSEEEESCC----------------------CCSCTTCTTCSEEECCSS-EEEECCCGGG---GGCTTCCEEECCS
T ss_pred EECCCCCCCCCCC----------------------HHHHHHCCCCCEEECCCC-CCCCCCCHHH---HCCCCCCEEECCC
T ss_conf 9791785577258----------------------888844686889989689-6778423677---5587766778978
Q ss_pred CCCCCCCCCHHHHHHHCCCCEEEEECCC
Q ss_conf 6564234556789862024435961135
Q 000280 946 CDRLKYLFSYSMVNSLVQLQHLEICYCW 973 (1728)
Q Consensus 946 C~~L~~l~~~~~~~~L~~L~~L~i~~c~ 973 (1728)
|. +....+...+..+++|++|++++|.
T Consensus 328 n~-l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 328 NN-FSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp SE-EEEECCHHHHTTCTTCCEEECCSSE
T ss_pred CC-CCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 85-2573797887248888788484784
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=311.50 Aligned_cols=309 Identities=21% Similarity=0.311 Sum_probs=236.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCCCCHHHHHHHHHHHHHHH-CCCC-CEEEEEEECCCCCHHHHHHH
Q ss_conf 6764443323999999999983--399559999927965089999999999875-0379-81699997889898999999
Q 000280 152 YTAYEQFDSRMKIFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIE-DKLF-DKVVFVEVTQTPDLQTIQNK 227 (1728)
Q Consensus 152 ~~~~~~~~gR~~~~~~i~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~l~~~ 227 (1728)
|.....|+||+.+++.|.++|. ++..++|+|+||||+||||||++++++.+. +.+| ++++|++++.. +...+...
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCC-CHHHHHHH
T ss_conf 99987140529999999999860368884699976998988999999983556888528996599977877-66889999
Q ss_pred H---HHHHHHH----HCCCCCHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 9---9973110----004989999999999999838-8199999598874333422688766432368999980999981
Q 000280 228 L---SSDLELE----FKQNENVFQRAEKLRQRLKNV-KRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTS 299 (1728)
Q Consensus 228 i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~~-k~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~iivTt 299 (1728)
+ +..++.. .....+.......+...+... +++||||||+|+...++.+ ..|++|||||
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------------~~~~~ilvTs 264 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------------DSQCQILLTT 264 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------------CSSCEEEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH--------------CCCCEEEEEC
T ss_conf 99999985035565567998899999999999706799869998589987999876--------------3798699989
Q ss_pred CCCHHHCCCCCCCCEEEC---CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 871011014898417981---58999999999999849999988328999999999199928999999998149904699
Q 000280 300 RNRDVLCNDMNSQKFFLI---EVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWN 376 (1728)
Q Consensus 300 R~~~v~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ia~~L~~~~~~~w~ 376 (1728)
|+..++.. +. ...+++ ++|+++|+++||...++.. .....+.+.+|+++|+|+|+||+++|+.++.+. ..|+
T Consensus 265 R~~~~~~~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~ 339 (591)
T 1z6t_A 265 RDKSVTDS-VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWE 339 (591)
T ss_dssp SCGGGGTT-CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHH
T ss_pred CCCHHHHH-CC-CCCEEEECCCCCCHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHH
T ss_conf 88177773-48-9826861588999899999999871898--310459999999995898379999999984484-3599
Q ss_pred HHHHHHHCCCCCCC----CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 99999940232102----55426689899885711784269999876234478887598899999875076667643899
Q 000280 377 DSLERLRNSTSRQI----HGMEENVYSSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEA 452 (1728)
Q Consensus 377 ~~l~~l~~~~~~~~----~~~~~~i~~~l~~sy~~L~~~~lk~~fl~~a~fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~ 452 (1728)
.+++.+........ ......+..++..||+.|+++ .|.||++||+||+|+.|+.+.+..+|.+.+
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~---------- 408 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET---------- 408 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH----------
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHH-HHHHHHHCCCCCCCCCCCHHHHHHHHCCCH----------
T ss_conf 999999886898765114654378999999999868999-999999745567998508999999966588----------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC---CCEEECHHHHHHHHHHHC
Q ss_conf 99899999999874244323898---919982899999999860
Q 000280 453 ARNRVYTLVDNLKASSLLLDGDK---DEVKLHDIIYAVAVSIAR 493 (1728)
Q Consensus 453 ~~~~~~~~i~~L~~~~ll~~~~~---~~~~mHdlvr~~a~~~~~ 493 (1728)
..+..++++|++++|++.... ..|+||++||+|+.....
T Consensus 409 --~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 409 --EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp --HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred --HHHHHHHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf --999999999985958688548985679976899999986535
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=291.63 Aligned_cols=128 Identities=19% Similarity=0.242 Sum_probs=62.9
Q ss_pred CCCEEEEECCCCCCCCCC-CCCCCCCCCEEEECCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCH-HHHCCCCCCEEEC
Q ss_conf 865199845767555684-44698765499814865899--2000133578556438888886646-7423555639802
Q 000280 560 NELRVVHFTRTCFLSLPS-SLVCLISLRTLSLEGCQVGD--VAIVGQLKKLEILSFRNSDIQQLPR-EIGQLVQLRLLDL 635 (1728)
Q Consensus 560 ~~LrvL~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~--~~~i~~L~~L~~L~L~~~~i~~LP~-~i~~L~~L~~L~l 635 (1728)
..+++|+++++.+..+|. .|+.+.+|++|++++|.+.. +..++++.+|++|++++|.+..+|. .++++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 88768889899778759788717876758878899648569778740667688889998567568545303888898989
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECC
Q ss_conf 3764311349610034765440025887443211238776554631499999868998245
Q 000280 636 RNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRD 696 (1728)
Q Consensus 636 ~~~~~l~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 696 (1728)
++| .+..++...++++++|++|++++|.+. ...+..++.+++|+.|+++.+.
T Consensus 105 ~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 105 MSN-SIQKIKNNPFVKQKNLITLDLSHNGLS--------STKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp CSS-CCCCCCSCTTTTCTTCCEEECCSSCCS--------CCCCCSSSCCTTCCEEECCSSC
T ss_pred CCC-CCCCCCHHHCCCCCCCCEEECCCCCCC--------CCCCHHHCCCCCCCEEECCCCC
T ss_conf 899-668539667415678888989899524--------6672111245567779745884
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=285.91 Aligned_cols=172 Identities=19% Similarity=0.233 Sum_probs=122.2
Q ss_pred EEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCEEEECCCC
Q ss_conf 997678898879877889970799991137888767946750798651998457675556-8444698765499814865
Q 000280 516 AISLPNRDIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSL-PSSLVCLISLRTLSLEGCQ 594 (1728)
Q Consensus 516 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~LrvL~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~ 594 (1728)
.+...+..+..+|..+. ++++.|.+.++ ....++...|.++++|++|+++++.+..+ |..|+.+.+|++|++++|.
T Consensus 8 ~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP-TNITVLNLTHN--QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCSSCCSCSC-TTCSEEECCSS--CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCCCCCC-CCCCEEECCCC--CCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 44877798052641248-88768889899--7787597887178767588788996485697787406676888899985
Q ss_pred CCCC--CCCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 8992--00013357855643888888664-67423555639802376431134961003476544002588744321123
Q 000280 595 VGDV--AIVGQLKKLEILSFRNSDIQQLP-REIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVE 671 (1728)
Q Consensus 595 i~~~--~~i~~L~~L~~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~ 671 (1728)
+..+ ..|+++.+|++|++++|.+..+| ..++++++|++|++++| .+...+...++++++|++|++.+|.+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~----- 158 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQ----- 158 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCC-----
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCC-CCCCCCCHHHCCCCCCCEEECCCCCCC-----
T ss_conf 67568545303888898989899668539667415678888989899-524667211124556777974588436-----
Q ss_pred CCCCCCHHHH--CCCCCCCEEEEEECCCCC
Q ss_conf 8776554631--499999868998245446
Q 000280 672 GGSNASLVEL--KGLSKLTTLEIHIRDARI 699 (1728)
Q Consensus 672 ~~~~~~~~~L--~~L~~L~~L~l~~~~~~~ 699 (1728)
......+ ..+++|+.|+++.+....
T Consensus 159 ---~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 159 ---ALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp ---CBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred ---CCCHHHHHCCCCCCCCEEECCCCCCCC
T ss_conf ---529788624466632179888982565
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=273.96 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=49.3
Q ss_pred CCEEEEECCCCCCCC-CCCCCCCCCCCEEEECCCCCCC--CCCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEECC
Q ss_conf 651998457675556-8444698765499814865899--20001335785564388888866-4674235556398023
Q 000280 561 ELRVVHFTRTCFLSL-PSSLVCLISLRTLSLEGCQVGD--VAIVGQLKKLEILSFRNSDIQQL-PREIGQLVQLRLLDLR 636 (1728)
Q Consensus 561 ~LrvL~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~--~~~i~~L~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~l~ 636 (1728)
.+++|+++++.+..+ |..|+.+.+|++|++++|.+.. +..|+++.+|++|++++|.+..+ |..++.+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 67589815873471796672567665289788983552485113684336764488985654586552344215376521
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 76431134961003476544002588744
Q 000280 637 NCRRLQAIAPNVISKLSRLEELYMGDSFS 665 (1728)
Q Consensus 637 ~~~~l~~ip~~~i~~L~~L~~L~l~~~~~ 665 (1728)
+| .+..++...++++++|++|++.+|.+
T Consensus 114 ~n-~i~~l~~~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 114 QT-GISSIDFIPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp TS-CCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred CC-CCCCCCCCHHCCCCCCCEEECCCCCC
T ss_conf 26-76657810122378223898879834
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=273.74 Aligned_cols=130 Identities=19% Similarity=0.247 Sum_probs=69.1
Q ss_pred CCCEEEEECCCCCCCCCC-CCCCCCCCCEEEECCCCCCC--CCCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEEC
Q ss_conf 865199845767555684-44698765499814865899--20001335785564388888866-467423555639802
Q 000280 560 NELRVVHFTRTCFLSLPS-SLVCLISLRTLSLEGCQVGD--VAIVGQLKKLEILSFRNSDIQQL-PREIGQLVQLRLLDL 635 (1728)
Q Consensus 560 ~~LrvL~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~--~~~i~~L~~L~~L~L~~~~i~~L-P~~i~~L~~L~~L~l 635 (1728)
..+++|+++++.+..++. .|..+.+|++|++++|.+.. +..|+++.+|++|++++|.+..+ |..++++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCC
Q ss_conf 37643113496100347654400258874432112387765546314999998689982454
Q 000280 636 RNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDA 697 (1728)
Q Consensus 636 ~~~~~l~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 697 (1728)
++| .+..++...++++++|++|++.+|.+. ....+..++++++|+.|+++.+..
T Consensus 112 ~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 112 VET-KLASLESFPIGQLITLKKLNVAHNFIH-------SCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp TTS-CCCCSSSSCCTTCTTCCEEECCSSCCC-------CCCCCGGGGTCTTCCEEECCSSCC
T ss_pred CCC-CCCCCCCCCCCCCCCCCEEECCCCCCC-------CEECHHHHHHCCCCCEEECCCCCC
T ss_conf 377-555445113489887798968788523-------253068673267777887668853
Done!