Query 000281
Match_columns 1728
No_of_seqs 653 out of 2815
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 02:38:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1473 Nucleosome remodeling 100.0 8.9E-33 1.9E-37 342.7 21.8 509 511-1426 159-701 (1414)
2 KOG0484 Transcription factor P 99.6 8.3E-16 1.8E-20 148.9 2.3 67 28-94 13-79 (125)
3 KOG0485 Transcription factor N 99.5 2E-14 4.4E-19 155.1 10.1 63 29-91 101-163 (268)
4 KOG0842 Transcription factor t 99.5 5.4E-14 1.2E-18 162.7 9.1 66 29-94 150-215 (307)
5 KOG0850 Transcription factor D 99.5 1.4E-13 3.1E-18 150.9 10.8 67 28-94 118-184 (245)
6 KOG0488 Transcription factor B 99.5 1E-13 2.2E-18 163.1 9.0 64 30-93 170-233 (309)
7 KOG0489 Transcription factor z 99.4 7.7E-14 1.7E-18 161.4 5.2 70 28-97 155-224 (261)
8 PF02791 DDT: DDT domain; Int 99.4 2.9E-13 6.2E-18 123.6 5.7 59 542-600 2-61 (61)
9 KOG0843 Transcription factor E 99.4 1.5E-13 3.2E-18 145.7 3.9 63 31-93 101-163 (197)
10 KOG2251 Homeobox transcription 99.4 6.8E-13 1.5E-17 145.3 8.6 68 27-94 32-99 (228)
11 KOG0492 Transcription factor M 99.4 1.9E-13 4.1E-18 147.1 4.1 71 30-100 142-212 (246)
12 smart00571 DDT domain in diffe 99.3 1.1E-12 2.5E-17 120.4 5.6 59 541-599 1-62 (63)
13 KOG0494 Transcription factor C 99.3 6.3E-13 1.4E-17 146.7 4.3 61 34-94 143-203 (332)
14 KOG0844 Transcription factor E 99.3 5E-12 1.1E-16 142.1 10.4 61 31-91 180-240 (408)
15 KOG0487 Transcription factor A 99.3 2.4E-12 5.3E-17 149.3 5.7 63 30-92 233-295 (308)
16 KOG4577 Transcription factor L 99.2 1.9E-11 4.1E-16 136.7 9.1 69 31-99 166-234 (383)
17 PF00046 Homeobox: Homeobox do 99.2 4.2E-12 9E-17 113.8 2.8 57 33-89 1-57 (57)
18 KOG0848 Transcription factor C 99.2 4.8E-12 1E-16 140.8 2.7 64 31-94 198-261 (317)
19 KOG1029 Endocytic adaptor prot 99.2 2.3E-09 4.9E-14 132.2 25.0 22 928-949 721-743 (1118)
20 TIGR01565 homeo_ZF_HD homeobox 99.1 4.6E-11 1E-15 107.6 5.6 53 32-84 1-57 (58)
21 KOG3802 Transcription factor O 99.1 1.5E-10 3.2E-15 136.7 8.3 62 31-92 293-354 (398)
22 KOG1245 Chromatin remodeling c 99.1 7E-10 1.5E-14 150.5 15.8 56 933-988 650-705 (1404)
23 KOG0491 Transcription factor B 99.1 2.8E-11 6.2E-16 126.5 1.5 63 31-93 99-161 (194)
24 KOG0493 Transcription factor E 99.0 8.1E-11 1.8E-15 130.3 3.1 57 33-89 247-303 (342)
25 COG5576 Homeodomain-containing 99.0 2.5E-10 5.5E-15 122.4 5.3 67 30-96 49-115 (156)
26 smart00389 HOX Homeodomain. DN 99.0 2E-10 4.3E-15 102.3 3.6 56 33-88 1-56 (56)
27 KOG0486 Transcription factor P 99.0 2.7E-10 5.9E-15 129.8 4.3 64 31-94 111-174 (351)
28 cd00086 homeodomain Homeodomai 99.0 3.2E-10 6.9E-15 101.6 3.6 57 33-89 1-57 (59)
29 PF15613 WHIM2: WSTF, HB1, Itc 98.9 7.2E-10 1.6E-14 91.6 3.6 37 1116-1152 1-37 (38)
30 KOG0847 Transcription factor, 98.9 3.1E-10 6.8E-15 123.1 1.6 64 30-93 165-228 (288)
31 KOG0483 Transcription factor H 98.9 8.8E-10 1.9E-14 122.0 3.0 61 32-92 50-110 (198)
32 KOG0490 Transcription factor, 98.8 6.5E-09 1.4E-13 117.8 7.3 64 29-92 57-120 (235)
33 PF15614 WHIM3: WSTF, HB1, Itc 98.8 5.9E-09 1.3E-13 89.1 3.8 36 1155-1190 1-37 (46)
34 KOG0849 Transcription factor P 98.6 5.3E-08 1.2E-12 117.6 8.9 66 28-93 172-237 (354)
35 KOG1168 Transcription factor A 98.5 3.2E-08 7E-13 111.4 3.0 75 17-91 294-368 (385)
36 PF15612 WHIM1: WSTF, HB1, Itc 98.4 2.3E-07 5E-12 81.6 4.5 48 934-981 3-50 (50)
37 PTZ00121 MAEBL; Provisional 98.4 1.6E-05 3.5E-10 104.3 21.6 13 1336-1348 1993-2005(2084)
38 PTZ00121 MAEBL; Provisional 98.2 6.2E-05 1.4E-09 99.1 21.2 13 1332-1344 2001-2013(2084)
39 PF05066 HARE-HTH: HB1, ASXL, 98.1 1.6E-06 3.6E-11 81.8 3.0 68 723-792 1-72 (72)
40 KOG0775 Transcription factor S 98.1 6.5E-06 1.4E-10 93.4 7.4 51 39-89 183-233 (304)
41 PTZ00266 NIMA-related protein 98.0 0.00018 3.9E-09 96.6 20.3 10 172-181 231-240 (1021)
42 KOG4364 Chromatin assembly fac 98.0 0.00037 8.1E-09 86.9 19.9 17 64-80 42-58 (811)
43 KOG0774 Transcription factor P 97.8 3.8E-05 8.2E-10 86.4 8.2 59 32-90 188-249 (334)
44 KOG1029 Endocytic adaptor prot 97.8 0.0012 2.5E-08 83.5 19.9 18 333-350 303-321 (1118)
45 KOG4364 Chromatin assembly fac 97.7 0.0021 4.4E-08 80.6 20.1 7 725-731 479-485 (811)
46 KOG2891 Surface glycoprotein [ 97.4 0.011 2.4E-07 67.6 20.0 18 350-367 278-295 (445)
47 PF05672 MAP7: MAP7 (E-MAP-115 97.3 0.037 8E-07 60.7 21.0 10 325-334 12-21 (171)
48 KOG0490 Transcription factor, 97.2 0.00024 5.2E-09 80.9 3.6 65 28-92 149-213 (235)
49 PF05920 Homeobox_KN: Homeobox 96.8 0.00034 7.4E-09 59.3 -0.1 34 53-86 7-40 (40)
50 KOG2891 Surface glycoprotein [ 96.6 0.12 2.5E-06 59.6 18.1 18 177-194 193-212 (445)
51 KOG2252 CCAAT displacement pro 96.6 0.0014 3.1E-08 81.3 3.4 58 30-87 418-475 (558)
52 KOG1144 Translation initiation 96.1 0.11 2.3E-06 67.0 16.2 9 1465-1473 911-919 (1064)
53 PF05262 Borrelia_P83: Borreli 95.7 0.36 7.9E-06 61.2 18.5 46 161-206 18-69 (489)
54 KOG1144 Translation initiation 95.7 0.16 3.4E-06 65.6 14.7 26 1393-1418 897-922 (1064)
55 KOG0163 Myosin class VI heavy 95.6 0.44 9.5E-06 61.2 18.0 30 561-590 1065-1099(1259)
56 KOG1146 Homeobox protein [Gene 95.6 0.015 3.3E-07 78.3 6.0 62 31-92 902-963 (1406)
57 KOG2072 Translation initiation 95.5 1.5 3.2E-05 57.7 22.4 16 183-198 389-404 (988)
58 KOG0163 Myosin class VI heavy 95.3 0.41 8.9E-06 61.5 16.6 18 640-660 1172-1189(1259)
59 KOG0742 AAA+-type ATPase [Post 94.1 5.4 0.00012 49.4 21.0 9 721-729 392-400 (630)
60 KOG4661 Hsp27-ERE-TATA-binding 94.0 0.75 1.6E-05 57.5 14.0 8 47-54 237-244 (940)
61 KOG2412 Nuclear-export-signal 93.2 1.1 2.3E-05 56.7 13.7 15 166-180 27-41 (591)
62 KOG2412 Nuclear-export-signal 92.9 1.2 2.5E-05 56.3 13.5 15 648-662 521-535 (591)
63 COG3064 TolA Membrane protein 92.5 9.1 0.0002 45.8 19.1 13 650-662 311-323 (387)
64 PF15236 CCDC66: Coiled-coil d 92.4 4.3 9.3E-05 44.6 15.5 7 417-423 89-95 (157)
65 COG3064 TolA Membrane protein 92.1 14 0.0003 44.3 19.9 15 582-596 305-319 (387)
66 PF13904 DUF4207: Domain of un 91.5 19 0.00042 42.9 21.0 9 494-502 235-243 (264)
67 KOG1924 RhoA GTPase effector D 90.8 0.98 2.1E-05 58.7 9.8 9 631-639 839-847 (1102)
68 KOG3054 Uncharacterized conser 90.5 1.8 3.8E-05 49.8 10.5 25 553-577 201-226 (299)
69 KOG3054 Uncharacterized conser 90.4 2.1 4.6E-05 49.3 10.9 7 742-748 276-282 (299)
70 KOG3654 Uncharacterized CH dom 89.9 29 0.00064 43.8 20.6 36 625-666 616-651 (708)
71 PRK00106 hypothetical protein; 88.7 42 0.00091 43.9 22.1 9 701-709 401-409 (535)
72 PRK12704 phosphodiesterase; Pr 87.1 88 0.0019 41.0 23.8 15 562-576 278-292 (520)
73 PRK12704 phosphodiesterase; Pr 86.0 49 0.0011 43.3 20.6 6 957-962 419-424 (520)
74 KOG2072 Translation initiation 85.6 84 0.0018 42.4 21.9 15 30-44 139-153 (988)
75 PF11569 Homez: Homeodomain le 83.5 0.41 8.9E-06 43.7 0.4 41 44-84 10-50 (56)
76 KOG3623 Homeobox transcription 82.3 1.3 2.9E-05 57.2 4.3 53 39-92 564-616 (1007)
77 PF06524 NOA36: NOA36 protein; 81.2 1.8 3.9E-05 50.2 4.4 9 1312-1320 50-58 (314)
78 KOG0579 Ste20-like serine/thre 80.0 2.2E+02 0.0048 37.9 26.8 74 171-246 622-703 (1187)
79 PF10446 DUF2457: Protein of u 78.0 1.5 3.3E-05 54.4 2.8 15 1701-1715 89-103 (458)
80 PF00769 ERM: Ezrin/radixin/mo 77.5 1.1E+02 0.0023 36.4 17.7 11 687-697 226-236 (246)
81 KOG3654 Uncharacterized CH dom 77.5 12 0.00026 47.0 10.0 15 581-595 508-522 (708)
82 PF09726 Macoilin: Transmembra 77.4 1.8E+02 0.0039 39.6 21.6 12 62-73 152-163 (697)
83 KOG0742 AAA+-type ATPase [Post 76.9 2.2E+02 0.0048 36.2 26.2 26 730-755 384-410 (630)
84 KOG0773 Transcription factor M 76.5 1.9 4.1E-05 52.8 3.1 58 32-89 239-299 (342)
85 PF06637 PV-1: PV-1 protein (P 76.2 54 0.0012 40.6 14.6 9 567-575 417-425 (442)
86 PF00769 ERM: Ezrin/radixin/mo 75.3 1.8E+02 0.004 34.5 18.9 8 592-599 192-199 (246)
87 KOG2507 Ubiquitin regulatory p 73.7 34 0.00073 42.8 12.3 9 547-555 337-345 (506)
88 KOG1832 HIV-1 Vpr-binding prot 73.6 2.5 5.4E-05 55.8 3.1 10 1592-1601 1368-1377(1516)
89 KOG0943 Predicted ubiquitin-pr 72.7 3.3 7.1E-05 55.8 3.9 12 171-182 219-230 (3015)
90 PF09756 DDRGK: DDRGK domain; 70.9 1.3 2.9E-05 49.9 0.0 40 553-597 100-140 (188)
91 KOG1832 HIV-1 Vpr-binding prot 69.7 3.2 6.9E-05 54.9 2.8 35 932-966 658-692 (1516)
92 KOG1924 RhoA GTPase effector D 68.6 21 0.00046 47.3 9.6 20 187-206 574-593 (1102)
93 KOG1830 Wiskott Aldrich syndro 67.8 2.6E+02 0.0057 35.4 17.8 9 47-55 121-129 (518)
94 KOG3598 Thyroid hormone recept 67.6 84 0.0018 44.6 14.8 7 78-84 1739-1745(2220)
95 PF07888 CALCOCO1: Calcium bin 65.9 4.3E+02 0.0094 35.0 23.7 32 460-491 427-458 (546)
96 PF02029 Caldesmon: Caldesmon; 65.5 44 0.00096 43.2 11.6 10 567-576 389-398 (492)
97 COG4942 Membrane-bound metallo 65.2 2.8E+02 0.0061 35.5 18.0 9 641-649 409-417 (420)
98 PF02029 Caldesmon: Caldesmon; 65.0 26 0.00057 45.2 9.5 8 83-90 13-20 (492)
99 PF05918 API5: Apoptosis inhib 64.8 2.1 4.6E-05 55.3 0.0 10 1445-1454 457-466 (556)
100 PF09726 Macoilin: Transmembra 62.9 5.5E+02 0.012 35.2 21.8 8 347-354 419-426 (697)
101 KOG3119 Basic region leucine z 62.7 2.5E+02 0.0054 33.9 16.5 29 177-206 16-44 (269)
102 PF04218 CENP-B_N: CENP-B N-te 62.4 6.8 0.00015 35.5 2.8 46 33-83 1-46 (53)
103 PRK12705 hypothetical protein; 61.6 5E+02 0.011 34.2 20.8 11 699-709 372-382 (508)
104 KOG0612 Rho-associated, coiled 60.3 7.3E+02 0.016 35.7 23.9 15 1403-1417 1176-1190(1317)
105 PRK00409 recombination and DNA 58.3 1.3E+02 0.0028 41.5 14.7 17 556-572 702-718 (782)
106 KOG1984 Vesicle coat complex C 57.7 3.1E+02 0.0067 37.8 17.1 48 1356-1406 807-854 (1007)
107 PF04147 Nop14: Nop14-like fam 57.5 9.2 0.0002 52.5 4.0 7 1597-1603 254-260 (840)
108 TIGR01069 mutS2 MutS2 family p 56.8 2.5E+02 0.0054 38.8 17.0 16 556-571 691-706 (771)
109 PLN03086 PRLI-interacting fact 55.9 50 0.0011 43.4 9.8 11 1331-1341 529-539 (567)
110 PTZ00491 major vault protein; 55.5 5E+02 0.011 36.0 18.8 8 174-181 420-427 (850)
111 KOG0577 Serine/threonine prote 55.1 6.7E+02 0.014 33.7 20.2 21 971-991 827-847 (948)
112 KOG0127 Nucleolar protein fibr 53.5 8.1 0.00018 49.1 2.2 7 1620-1626 190-196 (678)
113 PRK00409 recombination and DNA 53.3 3.7E+02 0.008 37.3 17.8 8 736-743 771-778 (782)
114 KOG2507 Ubiquitin regulatory p 52.5 1.3E+02 0.0027 38.1 11.7 10 566-575 366-375 (506)
115 PF13913 zf-C2HC_2: zinc-finge 51.5 4.8 0.0001 31.1 -0.1 23 1314-1340 3-25 (25)
116 COG4942 Membrane-bound metallo 51.1 6.5E+02 0.014 32.4 18.6 9 554-562 308-316 (420)
117 PF04931 DNA_pol_phi: DNA poly 50.9 11 0.00023 51.6 2.9 8 1379-1386 507-514 (784)
118 TIGR01069 mutS2 MutS2 family p 50.7 3.6E+02 0.0077 37.3 17.0 11 643-653 697-707 (771)
119 KOG3130 Uncharacterized conser 49.5 11 0.00023 46.4 2.4 45 1259-1303 6-53 (514)
120 KOG0579 Ste20-like serine/thre 44.4 9.7E+02 0.021 32.5 25.6 25 572-597 970-994 (1187)
121 KOG0982 Centrosomal protein Nu 43.5 8.3E+02 0.018 31.4 19.7 33 547-579 440-474 (502)
122 KOG0112 Large RNA-binding prot 42.7 1.6E+02 0.0035 40.3 11.3 35 160-194 493-527 (975)
123 PF09731 Mitofilin: Mitochondr 41.6 9.9E+02 0.021 31.7 23.5 18 720-737 534-551 (582)
124 PRK13428 F0F1 ATP synthase sub 40.6 3.1E+02 0.0068 35.4 13.4 18 518-535 154-171 (445)
125 KOG2038 CAATT-binding transcri 40.4 25 0.00054 46.7 3.7 29 530-558 269-299 (988)
126 COG2995 PqiA Uncharacterized p 40.4 18 0.00038 45.0 2.3 45 1272-1323 200-245 (418)
127 KOG0996 Structural maintenance 39.2 1.4E+03 0.031 32.9 19.5 15 695-709 651-665 (1293)
128 smart00017 OSTEO Osteopontin. 38.7 29 0.00062 40.3 3.4 30 1640-1680 44-73 (287)
129 KOG4691 Uncharacterized conser 37.6 6.6E+02 0.014 29.0 13.3 28 472-499 167-194 (227)
130 PF09731 Mitofilin: Mitochondr 37.2 1.1E+03 0.025 31.2 23.3 10 172-181 119-128 (582)
131 PRK14474 F0F1 ATP synthase sub 36.7 8E+02 0.017 29.3 15.1 7 536-542 183-189 (250)
132 KOG4849 mRNA cleavage factor I 36.6 9.4E+02 0.02 30.0 15.5 13 188-200 249-261 (498)
133 KOG2357 Uncharacterized conser 35.6 1.1E+02 0.0024 38.6 7.8 7 222-228 190-196 (440)
134 KOG2357 Uncharacterized conser 34.9 1.4E+02 0.003 37.8 8.5 12 77-88 136-147 (440)
135 COG5242 TFB4 RNA polymerase II 34.6 18 0.0004 41.5 1.1 31 1294-1324 255-285 (296)
136 KOG2253 U1 snRNP complex, subu 34.5 8.5E+02 0.018 32.8 15.6 38 934-975 598-635 (668)
137 KOG1189 Global transcriptional 34.5 32 0.00069 45.7 3.3 43 1284-1335 625-667 (960)
138 PF12172 DUF35_N: Rubredoxin-l 34.4 13 0.00027 31.1 -0.1 26 1296-1321 8-33 (37)
139 KOG0943 Predicted ubiquitin-pr 33.9 31 0.00067 47.4 3.1 15 1349-1363 1378-1393(3015)
140 PRK13428 F0F1 ATP synthase sub 31.5 1.3E+03 0.027 30.0 17.6 8 547-554 206-213 (445)
141 KOG1996 mRNA splicing factor [ 30.6 1.2E+02 0.0026 36.6 6.8 9 701-709 215-223 (378)
142 KOG2253 U1 snRNP complex, subu 29.7 1.5E+03 0.033 30.7 16.7 29 152-180 37-65 (668)
143 KOG4246 Predicted DNA-binding 29.4 29 0.00063 46.2 1.8 17 190-206 106-122 (1194)
144 TIGR03321 alt_F1F0_F0_B altern 29.2 1E+03 0.022 28.2 15.1 90 380-469 35-124 (246)
145 PTZ00415 transmission-blocking 28.6 41 0.00088 48.2 2.9 15 1675-1689 152-166 (2849)
146 KOG0681 Actin-related protein 28.5 7E+02 0.015 33.0 13.2 8 646-653 519-526 (645)
147 PRK15103 paraquat-inducible me 28.2 43 0.00093 42.6 3.0 30 1295-1324 217-246 (419)
148 PF12128 DUF3584: Protein of u 28.0 2.1E+03 0.046 31.6 23.0 13 949-961 1068-1080(1201)
149 KOG3064 RNA-binding nuclear pr 27.5 31 0.00068 40.5 1.5 10 1614-1623 178-187 (303)
150 COG2433 Uncharacterized conser 27.0 1.1E+03 0.023 31.8 14.6 17 168-184 162-178 (652)
151 KOG2441 mRNA splicing factor/p 26.3 7E+02 0.015 31.6 12.2 10 296-305 224-233 (506)
152 KOG0262 RNA polymerase I, larg 26.3 47 0.001 46.3 2.9 18 1262-1279 1064-1085(1640)
153 PF05071 NDUFA12: NADH ubiquin 25.6 55 0.0012 33.9 2.7 31 1118-1152 2-32 (105)
154 PRK06231 F0F1 ATP synthase sub 25.6 1.1E+03 0.024 27.3 15.1 90 380-469 78-167 (205)
155 TIGR00570 cdk7 CDK-activating 25.3 5E+02 0.011 32.1 10.9 6 565-570 286-291 (309)
156 PTZ00415 transmission-blocking 24.8 46 0.001 47.7 2.5 22 1611-1642 134-155 (2849)
157 TIGR02098 MJ0042_CXXC MJ0042 f 24.7 22 0.00048 29.7 -0.3 25 1300-1324 3-36 (38)
158 KOG1103 Predicted coiled-coil 23.9 1.5E+03 0.032 28.3 15.9 34 940-975 487-520 (561)
159 TIGR02680 conserved hypothetic 23.7 2.6E+03 0.057 31.2 19.9 33 625-660 487-519 (1353)
160 KOG3915 Transcription regulato 22.3 1.8E+03 0.039 28.7 15.7 157 274-447 432-591 (641)
161 COG2433 Uncharacterized conser 22.2 1.5E+03 0.032 30.6 14.6 11 184-194 190-200 (652)
162 PRK14472 F0F1 ATP synthase sub 22.0 1.1E+03 0.025 26.2 15.1 90 380-469 48-137 (175)
163 PRK02363 DNA-directed RNA poly 21.8 94 0.002 33.5 3.6 77 728-807 8-84 (129)
164 COG5406 Nucleosome binding fac 21.2 64 0.0014 42.1 2.5 31 1160-1190 592-622 (1001)
165 KOG2038 CAATT-binding transcri 20.8 94 0.002 41.8 3.9 35 1383-1420 535-569 (988)
166 KOG0161 Myosin class II heavy 20.7 3.4E+03 0.073 31.3 22.6 25 1452-1476 1801-1825(1930)
167 PF09862 DUF2089: Protein of u 20.3 57 0.0012 34.4 1.6 24 1302-1325 1-24 (113)
168 PF03154 Atrophin-1: Atrophin- 20.1 2.7E+03 0.057 29.8 20.7 8 649-656 762-769 (982)
No 1
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8.9e-33 Score=342.66 Aligned_cols=509 Identities=17% Similarity=0.157 Sum_probs=350.6
Q ss_pred cccccCCCCCCCCccccCCCCCCCCCCCCChhhhhhhhhhHHHHHhhhhccccCCCCHHHHHHHHh-ccchhHHHHHHHH
Q 000281 511 LDSFRDSLSVFPPKTVRLKRPFSVQPWSDSEENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFH-DHESRLLGEIHLA 589 (1728)
Q Consensus 511 l~s~R~~Lp~fPP~~v~lkrP~ps~Pl~vp~e~vg~LL~VweFL~~F~~~L~LspfTLddf~~AL~-~~ds~LL~eiH~a 589 (1728)
++.+.+.+-..|+.-+++..|-++.++.||+++|+++|.||+||++|+.+|.|+||+|+|||+||. +.++.||+|+|++
T Consensus 159 ~d~~~p~~~~e~~~vPpleLP~SSedi~IPne~Vm~alsIYevLRsF~~~LrisPF~feDFcaAL~~~~~ssLlaeVHva 238 (1414)
T KOG1473|consen 159 LDEPNPDLEEEPPLVPPLELPESSEDIGIPNEHVMDALSIYEVLRSFSRQLRISPFRFEDFCAALISHEQSSLLAEVHVA 238 (1414)
T ss_pred CCCCCCChhhccccCCCccCCCcccccCCcHHHHHHHHHHHHHHHhhcceEEeCCccHHHHHHHHHhcCchhHHHHHHHH
Confidence 344444555667777889999999999999999999999999999999999999999999999999 5777899999999
Q ss_pred HHHHHHhChhhhccCCCCCCCCccccCCCCCCCcchhhhhhhccccchhhhhhccCCccHHHHHHHHHHHhCCCCccccc
Q 000281 590 LLKSIIKDIEDVARTPSTGLGMNQYCAANPEGGHPRIIEGAYAWGFDIRNWQQLLNPLTWHEIFRQLALSAGFGPKLKKR 669 (1728)
Q Consensus 590 LLk~ll~d~ed~~~~~s~~~~~~~~~~~~~~~~~~~~~~~a~~wg~~~~~w~~~Ln~lTWpEILRq~lla~G~g~~~~~~ 669 (1728)
|||+|+++++ +++++||+.. .+|+++ +-..+||+||||||||||+.|.|+-..-
T Consensus 239 LLrA~lr~eD----~~~Thfs~~d--~Kdsvn-----------------I~l~liD~lTWPevLrqY~ea~~~ad~~--- 292 (1414)
T KOG1473|consen 239 LLRALLREED----RLSTHFSPLD--SKDSVN-----------------IDLYLIDTLTWPEVLRQYFEADKHADGP--- 292 (1414)
T ss_pred HHHHHhhhhh----hcccccCccc--ccccee-----------------eeeehhccccHHHHHHHHHHhccccCcc---
Confidence 9999999865 3466898843 444433 2225689999999999999999742110
Q ss_pred cccccCCCCCCCCCCcccchhhhcccchhHHHHHHHHHhcCCCccccccccCccchhHHHHHHHhhhcCCCcchhHHHHH
Q 000281 670 SSKWANVGDNHEGKGCEDIVSTIRNGSAAENAFAWMREKGLLLPRRSRHKLTPGTVKFAAFHVLSLEGSKGLTVLELADK 749 (1728)
Q Consensus 670 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~~m~~~g~~~~~~~~~rl~pgTvk~a~f~vls~~g~~gl~v~ela~~ 749 (1728)
T Consensus 293 -------------------------------------------------------------------------------- 292 (1414)
T KOG1473|consen 293 -------------------------------------------------------------------------------- 292 (1414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccccCCCCCCchhhHHHhhcccccchhccCCCcccccCCccCChhhHHHHHHHHHHHHHhhccCCCCCCCCCcccc
Q 000281 750 IQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRPAFRKDPADAEAILAAARKKIRIFENGFLGGEDADDVER 829 (1728)
Q Consensus 750 iqk~glrd~~ts~t~ea~i~~alsrd~~Lfer~apsty~~r~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~ 829 (1728)
||--++| |
T Consensus 293 ----------------------------v~~~~n~--------f------------------------------------ 300 (1414)
T KOG1473|consen 293 ----------------------------VWDIFNP--------F------------------------------------ 300 (1414)
T ss_pred ----------------------------hhhhhcc--------c------------------------------------
Confidence 0100100 0
Q ss_pred cccccCCCCCCccccccCCCCCCCcccccccccccccccCCCCcccccccccccccccCCCccCCCCCccccccCccccc
Q 000281 830 DEDSECDVEEDPEVEDLATPSSANKNIDRYDEANTCLVSGKDNACNDVALSVQNEVDKGFSSFSLNDSKDARCQGTADNY 909 (1728)
Q Consensus 830 ~~d~~~~~~~d~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1728)
T Consensus 301 -------------------------------------------------------------------------------- 300 (1414)
T KOG1473|consen 301 -------------------------------------------------------------------------------- 300 (1414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhccccCCcccchhcccCCCchhhHhhcccccccCCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 000281 910 VAVEDFGASHLNQENIEIDESKPGESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMW 989 (1728)
Q Consensus 910 ~~~~~~~~~~~~~~~~eides~~Ge~wl~~L~e~eY~dLsveeRL~aL~aLcdllLet~sIR~~LEerlE~a~aLkkq~r 989 (1728)
+.+.+|...+|.-||+||+|||+++|+++++|+.|+..-+
T Consensus 301 ------------------------------v~~~eY~~~pv~~klkILQ~L~Dq~l~~~s~R~e~~se~~---------- 340 (1414)
T KOG1473|consen 301 ------------------------------VVEDEYPYRPVSNKLKILQFLCDQFLTVNSLRDEIDSEGE---------- 340 (1414)
T ss_pred ------------------------------cccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccc----------
Confidence 1144677789999999999999999999999999872211
Q ss_pred HHHHHHHHHhHHHhhhcccCCcccCcchhhhhcccccCCCCCCCccccC------CCCCCCCCcccCcccccCccccccC
Q 000281 990 AEAQLDKSRLKEENITKLDFTPAMGSKAETHLASSAAEGGQSPLPVFVD------NKNEASPSLAEDQKPMFGSQVFQNH 1063 (1728)
Q Consensus 990 ~ea~edkrR~keE~~~r~~~~~~~~~K~e~~~~~~~~e~~~sp~~~~~~------~~~~~~p~~~~~~~~~~~~~~~~~~ 1063 (1728)
..-..+.+.+.......+.+++....+.|+.-.|..++.. .++-+...+.+++..+.+++
T Consensus 341 ---------~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~----- 406 (1414)
T KOG1473|consen 341 ---------IEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKN----- 406 (1414)
T ss_pred ---------eeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhc-----
Confidence 1124577788888888899988887776665544333221 11222222222222222211
Q ss_pred CCCCccccccccCCCCCCcchhhhhhhhhhhHhhHHHHHHHHHHHHHHhhccccccCCccCCCCceeecccCCCCCCCCC
Q 000281 1064 LSEFPNERTVAVQDPSTGLDNLATQQHGYASKRSRSQLKAYIAHMAEEMYVYRSLPLGQDRRRNRYWQFATSASRNDPCS 1143 (1728)
Q Consensus 1064 ~~~~~~E~~~~~~d~~~~~~~~~~r~~~~~aek~~~Qlk~~i~~~~ee~~~~R~~pLGkDR~~nRYW~F~~s~s~~dp~~ 1143 (1728)
...+|..|+|.||+.+.||+. .
T Consensus 407 ------------------------------------------------~~~iR~~~iG~dr~gr~ywfi----------~ 428 (1414)
T KOG1473|consen 407 ------------------------------------------------VDSIRHTPIGRDRYGRKYWFI----------S 428 (1414)
T ss_pred ------------------------------------------------ccceeccCCCcCccccchhce----------e
Confidence 133599999999999999988 6
Q ss_pred CceEEeccCC--cEEEEcCHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHHHHhhccCccccC---------Cchhh
Q 000281 1144 GRIFVELHDG--TWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETSFKDKVRRNLQGIDTVG---------QSWTA 1212 (1728)
Q Consensus 1144 gri~VE~~dg--~W~~ydt~eeld~Ll~~Ld~rG~RE~~Lk~~L~k~~~~I~~~M~~r~~~~~~~~---------~~~~~ 1212 (1728)
+||+||..|+ .| ||+|.-+|-.||..||.-=+ |..|...|-...+.|..+|.-.+..++... ++..+
T Consensus 429 rrl~Ie~~det~l~-yysT~pqly~ll~cLd~~~~-e~~L~d~i~~~~ee~~rqM~lT~~ltne~R~~~~f~~~~h~r~~ 506 (1414)
T KOG1473|consen 429 RRLRIEGMDETLLW-YYSTCPQLYHLLRCLDRTYV-EMYLCDGIWERREEIIRQMGLTEELTNELRGAVDFGEDPHGRLF 506 (1414)
T ss_pred eeeEEecCCCcEEE-EecCcHHHHHHHHHhchHHH-HHhhccchhhhHHHHHHhccchhhhhhhhhcccccccCCCccee
Confidence 7999999998 56 89999999999999985545 999999999999999999998876665555 22221
Q ss_pred hh-----------hhcccccCCCCCCCCCCCCCCccCCCCCcccc--ccchhhhcccchHHHHHHHHhhhhHHHHHHhhh
Q 000281 1213 IK-----------NEAAEMDVDPDFASSDSPSSTVCGLNSDTLET--SSSFRIELGRNEIEKKAALERFQDFQWWMWREC 1279 (1728)
Q Consensus 1213 ~~-----------~~~~~~~~~~~~~~~~sp~s~~~~~~~d~~~~--s~s~~iE~g~~~~e~~~~~~r~~~f~~wmw~~~ 1279 (1728)
+- |..-..+. +-+.+..+. +...+ |++..-| .-.|...+..+|++-. --+..
T Consensus 507 l~~~c~~~lv~~iq~~~da~l---------~e~~l~~i~-k~v~~~~S~s~~~e---E~~e~ck~is~~~d~p--~~n~~ 571 (1414)
T KOG1473|consen 507 LGRDCAVLLVLCIQVVEDAIL---------KEENLGDID-KVVLVLISASAHQE---EYVEICKAISQYWDLP--EGNLW 571 (1414)
T ss_pred eecchhhHHhhhhhhhhhhhh---------hHhhhcchH-hhhhhhhhcccchH---HHHHHHHHHhhccccc--ccchh
Confidence 10 00000000 000000000 00011 1111111 1334566777777665 22222
Q ss_pred ccccchhhhhccccccccccccccccccccCccCCCCCccccccc---cCCCcccccchhhhhhhhhccCCcccccCCCc
Q 000281 1280 FNSLSLCASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSCHRTFG---AVDKSSKFSEHSIQCEEKTKLGLRDIHVSDSS 1356 (1728)
Q Consensus 1280 ~~~~~l~a~k~Gkk~~~~~l~~C~~C~~~y~~~e~hC~~CH~tf~---~~d~e~~~~~h~~~c~~k~~~~~~~~~~~~~~ 1356 (1728)
+.+. -.+.++++.| .+.+++.-.....+.+...+.-|...+ ..++.++++..+. ....
T Consensus 572 ~~~e--~~~dqtf~~y--~ys~n~vse~~~~d~e~~dkk~~~~tkf~l~~nsd~~~~g~~~---------------t~gt 632 (1414)
T KOG1473|consen 572 RLRE--EGNDQTFMKY--YYSGNEVSEIFLTDSENADKKSHMQTKFALITNSDGVTAGNVT---------------TYGT 632 (1414)
T ss_pred hhhh--cccccchhhh--cccCCchhhccCCchhhhcccccccceecccccccceeccccc---------------cccc
Confidence 2222 3455666666 667777777788888888888888764 1123333332111 0011
Q ss_pred chHHHHHHHHHHHHHHhcCChhHHhhhhchhHHHHHHhhhccCCCHHHHHHHHHHHHhhhhhhccccccc
Q 000281 1357 LPLGIRLLKPLSAVIEAYIPPEALEASWTDERRKTWGMKLNMSSSAEEVLQLLTILESGIKRSYLSSNFE 1426 (1728)
Q Consensus 1357 lp~~l~~LK~~l~~iEa~lp~eAl~~~W~~~~rk~W~~~l~~ass~~ellq~l~~le~~ik~d~L~~~~~ 1426 (1728)
-.....++...|...++.+|...++..|-.- -|.|-..|..|-++.+|.-.|-.+.-+++-.-..+.||
T Consensus 633 ~~~~~~~~~~t~~~~lSniP~s~~n~~w~~~-tkg~~lavs~A~~~~el~s~t~~~d~s~~~~~~~~~ss 701 (1414)
T KOG1473|consen 633 GSQHKKLIARTLQQGLSNIPISYNNRKWPVY-TKGFELAVSAAADLAELSSETLEPDLSKRSNAFKAASS 701 (1414)
T ss_pred hhhcchHHHhhhhhhhccCchHhhhccchhh-ccchhhhhhccchHHHHHHhhcccchhhhhhhhccchh
Confidence 1224567778889999999999999999876 99999999999999999999999999999888888777
No 2
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.56 E-value=8.3e-16 Score=148.86 Aligned_cols=67 Identities=33% Similarity=0.556 Sum_probs=62.2
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccCC
Q 000281 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1728)
Q Consensus 28 ~~~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~ 94 (1728)
..++.||-||+||..||..||+.|..+|||++.+|++||.++.|++.+|||||||||+|.||+.+..
T Consensus 13 ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr~a 79 (125)
T KOG0484|consen 13 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQERAA 79 (125)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHH
Confidence 3457788899999999999999999999999999999999999999999999999999999976543
No 3
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.53 E-value=2e-14 Score=155.14 Aligned_cols=63 Identities=30% Similarity=0.467 Sum_probs=60.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhc
Q 000281 29 GQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEK 91 (1728)
Q Consensus 29 ~~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~ 91 (1728)
..+|||.||+|+..|+..||..|+..+|.+..+|.-||.+|.|++.||+|||||||.||||+-
T Consensus 101 ~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~ 163 (268)
T KOG0485|consen 101 DDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQY 163 (268)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHH
Confidence 348899999999999999999999999999999999999999999999999999999999954
No 4
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.48 E-value=5.4e-14 Score=162.71 Aligned_cols=66 Identities=26% Similarity=0.526 Sum_probs=61.2
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccCC
Q 000281 29 GQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1728)
Q Consensus 29 ~~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~ 94 (1728)
..++||+|..||..|+.+||+.|.+++|++.++|++||..|+||++||||||||||.|+||+++..
T Consensus 150 ~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk 215 (307)
T KOG0842|consen 150 KRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDK 215 (307)
T ss_pred cccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhh
Confidence 457788899999999999999999999999999999999999999999999999999999965443
No 5
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.47 E-value=1.4e-13 Score=150.90 Aligned_cols=67 Identities=33% Similarity=0.585 Sum_probs=62.8
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccCC
Q 000281 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1728)
Q Consensus 28 ~~~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~ 94 (1728)
.++|.|+.||.++..||..|.+.|+++.|+-.++|++||..||||.+||+|||||||.|.||..+.+
T Consensus 118 k~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g 184 (245)
T KOG0850|consen 118 KGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQG 184 (245)
T ss_pred CcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcC
Confidence 4467788999999999999999999999999999999999999999999999999999999987744
No 6
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.46 E-value=1e-13 Score=163.11 Aligned_cols=64 Identities=34% Similarity=0.550 Sum_probs=61.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccC
Q 000281 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1728)
Q Consensus 30 ~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~ 93 (1728)
+|+|+.||.||..||..||+.|++++|.+.++|.+||..|||+..||++||||||+||||+...
T Consensus 170 kK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 170 KKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred cccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 6888899999999999999999999999999999999999999999999999999999997755
No 7
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.43 E-value=7.7e-14 Score=161.39 Aligned_cols=70 Identities=36% Similarity=0.609 Sum_probs=63.8
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccCCCcc
Q 000281 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPKK 97 (1728)
Q Consensus 28 ~~~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~~~q 97 (1728)
.+++.||.||.||..||.+||+.|+.|+|.+...|.+||..|.|+|+||+|||||||+||||..+.....
T Consensus 155 ~~~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~~~~ 224 (261)
T KOG0489|consen 155 TGGKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAKSSQ 224 (261)
T ss_pred ccCCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3456899999999999999999999999999999999999999999999999999999999976655443
No 8
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=99.40 E-value=2.9e-13 Score=123.62 Aligned_cols=59 Identities=58% Similarity=0.940 Sum_probs=55.5
Q ss_pred hhhhhhhhhHHHHHhhhhccccCCCCHHHHHHHHhccchh-HHHHHHHHHHHHHHhChhh
Q 000281 542 ENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHDHESR-LLGEIHLALLKSIIKDIED 600 (1728)
Q Consensus 542 e~vg~LL~VweFL~~F~~~L~LspfTLddf~~AL~~~ds~-LL~eiH~aLLk~ll~d~ed 600 (1728)
++|+++||||+||++|+++|+|+|||||+|++||.+.++. ||.|||++||++|+++.+|
T Consensus 2 ~~~~~~L~v~~Fl~~F~~~L~L~~ftlddf~~AL~~~~~~~ll~ei~~~LL~~l~~~~~d 61 (61)
T PF02791_consen 2 EAFGDLLMVWEFLNTFGEVLGLSPFTLDDFEQALLCNDPSGLLAEIHCALLKALLADEED 61 (61)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHcCCCcchhHHHHHHHHHHHHHhccCC
Confidence 6799999999999999999999999999999999987665 9999999999999999874
No 9
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.39 E-value=1.5e-13 Score=145.74 Aligned_cols=63 Identities=35% Similarity=0.564 Sum_probs=60.3
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccC
Q 000281 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1728)
Q Consensus 31 k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~ 93 (1728)
+.||.||.||..||..||..|+.++|....+|+.||+.|+|++.||+|||||||.|.||.+..
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e 163 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQE 163 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999996544
No 10
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.38 E-value=6.8e-13 Score=145.29 Aligned_cols=68 Identities=32% Similarity=0.532 Sum_probs=63.7
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccCC
Q 000281 27 NEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1728)
Q Consensus 27 s~~~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~ 94 (1728)
...+|.||.||+||..|+.+||.+|..+.||++.+|++||.+|+|.+.+|||||.|||+|+|+++...
T Consensus 32 ~~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 32 SGPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred ccchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 44568899999999999999999999999999999999999999999999999999999999987654
No 11
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.38 E-value=1.9e-13 Score=147.14 Aligned_cols=71 Identities=32% Similarity=0.508 Sum_probs=63.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccCCCccccc
Q 000281 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPKKMRK 100 (1728)
Q Consensus 30 ~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~~~q~~~ 100 (1728)
+..|++||-||.+||..||+.|...+|.++.+|.+++..|.||++||+|||||||+|.||.+.....+...
T Consensus 142 k~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQeae~Ek~km 212 (246)
T KOG0492|consen 142 KPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQEAELEKLKM 212 (246)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHHHHHHhhh
Confidence 34578899999999999999999999999999999999999999999999999999999987654443333
No 12
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=99.33 E-value=1.1e-12 Score=120.43 Aligned_cols=59 Identities=44% Similarity=0.835 Sum_probs=55.3
Q ss_pred hhhhhhhhhhHHHHHhhhhccccCCCC--HHHHHHHHhccchh-HHHHHHHHHHHHHHhChh
Q 000281 541 EENVGNLLMVWRFFITFADVLGLWPFT--LDEFVQAFHDHESR-LLGEIHLALLKSIIKDIE 599 (1728)
Q Consensus 541 ~e~vg~LL~VweFL~~F~~~L~LspfT--Lddf~~AL~~~ds~-LL~eiH~aLLk~ll~d~e 599 (1728)
++.|+++||||+||++|+++|+|+||+ ||+|++||.+.++. +|.+||++||++|+++++
T Consensus 1 ~~~~~d~l~V~eFl~~F~~~L~L~~f~~~l~~f~~Al~~~~~~~ll~ei~~~LL~~i~~d~~ 62 (63)
T smart00571 1 NEAFGDLLMVYEFLRSFGKVLGLSPFRATLEDFIAALKCRDQNGLLTEVHVVLLRAILKDEG 62 (63)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHhcCCcchHHHHHHHHHHHHHHhCCC
Confidence 357999999999999999999999999 99999999987775 999999999999999875
No 13
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.33 E-value=6.3e-13 Score=146.68 Aligned_cols=61 Identities=36% Similarity=0.574 Sum_probs=57.2
Q ss_pred CCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccCC
Q 000281 34 PKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1728)
Q Consensus 34 r~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~ 94 (1728)
+-||.||..|+..||+.|...+||+...|+.||.++.|.+.+|||||||||+||||.++.-
T Consensus 143 h~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~w 203 (332)
T KOG0494|consen 143 HFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRW 203 (332)
T ss_pred cccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhc
Confidence 3499999999999999999999999999999999999999999999999999999966544
No 14
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.32 E-value=5e-12 Score=142.10 Aligned_cols=61 Identities=36% Similarity=0.602 Sum_probs=58.2
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhc
Q 000281 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEK 91 (1728)
Q Consensus 31 k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~ 91 (1728)
+-||.||.||.+||..||+.|-+..|-+.+.|.+||..|+|++..|+|||||||+|+||++
T Consensus 180 qmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQR 240 (408)
T KOG0844|consen 180 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR 240 (408)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhh
Confidence 4488999999999999999999999999999999999999999999999999999999953
No 15
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.28 E-value=2.4e-12 Score=149.27 Aligned_cols=63 Identities=38% Similarity=0.618 Sum_probs=60.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhcc
Q 000281 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1728)
Q Consensus 30 ~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~ 92 (1728)
++.||||--+|..|+.+||+.|..|.|.+...|.+|++.|+||++||+|||||||+|.||..+
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~r 295 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNR 295 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhh
Confidence 577889999999999999999999999999999999999999999999999999999999764
No 16
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.23 E-value=1.9e-11 Score=136.66 Aligned_cols=69 Identities=36% Similarity=0.551 Sum_probs=64.3
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccCCCcccc
Q 000281 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPKKMR 99 (1728)
Q Consensus 31 k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~~~q~~ 99 (1728)
..||+||++|..||+.|+.+|+..+.|....|++|+..+||..++|||||||||||.||.++...++..
T Consensus 166 ~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RW 234 (383)
T KOG4577|consen 166 SNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRW 234 (383)
T ss_pred ccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHH
Confidence 358999999999999999999999999999999999999999999999999999999999887776433
No 17
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.22 E-value=4.2e-12 Score=113.77 Aligned_cols=57 Identities=46% Similarity=0.733 Sum_probs=55.4
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhh
Q 000281 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1728)
Q Consensus 33 rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr 89 (1728)
|++|+.||..|+..|+..|..++||+..++..||..|||+..+|++||||||+++||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 578999999999999999999999999999999999999999999999999999986
No 18
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.20 E-value=4.8e-12 Score=140.81 Aligned_cols=64 Identities=33% Similarity=0.569 Sum_probs=58.9
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccCC
Q 000281 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1728)
Q Consensus 31 k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~ 94 (1728)
.+-+-|.++|..|..+||+.|.-++|.++..+.+||..|||+||||+|||||||+|+||..+..
T Consensus 198 TkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk 261 (317)
T KOG0848|consen 198 TKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKK 261 (317)
T ss_pred cccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHH
Confidence 3445688999999999999999999999999999999999999999999999999999976554
No 19
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=2.3e-09 Score=132.15 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=13.5
Q ss_pred ccCCCchh-hHhhcccccccCCC
Q 000281 928 DESKPGES-WIQGLAEGDYSHLS 949 (1728)
Q Consensus 928 des~~Ge~-wl~~L~e~eY~dLs 949 (1728)
++|+.||| ||.|=..|.+.=+.
T Consensus 721 ~esq~aEPGWlaGel~gktGWFP 743 (1118)
T KOG1029|consen 721 FESQAAEPGWLAGELRGKTGWFP 743 (1118)
T ss_pred ehhccCCcccccceeccccCcCc
Confidence 57777766 67666665554443
No 20
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.15 E-value=4.6e-11 Score=107.64 Aligned_cols=53 Identities=17% Similarity=0.326 Sum_probs=51.2
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCC----CCHHHHHHHHHHhCCCccceeeccccch
Q 000281 32 GKPKRQMKTPFQLETLEKAYASETY----PSESTRAELSEKLGLSDRQLQMWFCHRR 84 (1728)
Q Consensus 32 ~rr~Rt~fT~~Ql~~LE~~F~~~~y----Ps~~~R~eLA~~LgLserqVqVWFQNRR 84 (1728)
+||.||.||..|+..|+..|+.++| |+...|.+||..|||++++|+|||||.+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 4889999999999999999999999 9999999999999999999999999975
No 21
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.09 E-value=1.5e-10 Score=136.70 Aligned_cols=62 Identities=26% Similarity=0.476 Sum_probs=59.6
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhcc
Q 000281 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1728)
Q Consensus 31 k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~ 92 (1728)
||||+||+|+......||.+|..|+.|+..+...||.+|+|...+|+|||||||.|.||...
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRITP 354 (398)
T ss_pred cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCCC
Confidence 78999999999999999999999999999999999999999999999999999999999443
No 22
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.09 E-value=7e-10 Score=150.55 Aligned_cols=56 Identities=21% Similarity=0.147 Sum_probs=47.9
Q ss_pred chhhHhhcccccccCCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 000281 933 GESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQM 988 (1728)
Q Consensus 933 Ge~wl~~L~e~eY~dLsveeRL~aL~aLcdllLet~sIR~~LEerlE~a~aLkkq~ 988 (1728)
.+..++.|.+..|.+|...+++.+|..||+.++.+..++++|+.+.+....|+++.
T Consensus 650 ~~~~~~kl~~~~v~dl~~~~~~~il~~~~~~l~~~~e~~d~i~~~~~~~~eLk~~~ 705 (1404)
T KOG1245|consen 650 HEELMEKLHTLLVFDLRAEEKDKILRQLCQRLLMLGEVVDHIEDRQQLTRELKQEI 705 (1404)
T ss_pred hhhhhhhHHHHHHHhhhhhhhhhHHHHHHHHhccchhhhhhhhhHHHHHHHHhhhh
Confidence 45578899999999999999999999999999999999999999654445555543
No 23
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.08 E-value=2.8e-11 Score=126.54 Aligned_cols=63 Identities=37% Similarity=0.605 Sum_probs=59.3
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccC
Q 000281 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1728)
Q Consensus 31 k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~ 93 (1728)
++++.||+|+..|+..|++.|+.++|.+.++|.+||..|+|+++||+.||||||+|.||+.+.
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~ 161 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRN 161 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 457789999999999999999999999999999999999999999999999999999996544
No 24
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.04 E-value=8.1e-11 Score=130.27 Aligned_cols=57 Identities=37% Similarity=0.622 Sum_probs=55.9
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhh
Q 000281 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1728)
Q Consensus 33 rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr 89 (1728)
||+||.||.+||..|+..|+.|+|.....|.+||..|+|.+.||+|||||+|+|-||
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKK 303 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKK 303 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhh
Confidence 678999999999999999999999999999999999999999999999999999999
No 25
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.01 E-value=2.5e-10 Score=122.35 Aligned_cols=67 Identities=34% Similarity=0.550 Sum_probs=61.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccCCCc
Q 000281 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPK 96 (1728)
Q Consensus 30 ~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~~~ 96 (1728)
...+++|++.|..|+.+|+..|..+|||+..+|..|+..|+|+++-|||||||||++.|+.......
T Consensus 49 ~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~~ 115 (156)
T COG5576 49 SPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVE 115 (156)
T ss_pred CcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccchh
Confidence 4668889999999999999999999999999999999999999999999999999999996655433
No 26
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.01 E-value=2e-10 Score=102.25 Aligned_cols=56 Identities=52% Similarity=0.798 Sum_probs=52.9
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhh
Q 000281 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDK 88 (1728)
Q Consensus 33 rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~K 88 (1728)
++.|+.|+..|+..|+..|..++||+..++..||..+||+..+|+.||+|||++.+
T Consensus 1 ~k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 1 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 45688899999999999999999999999999999999999999999999998864
No 27
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=98.98 E-value=2.7e-10 Score=129.82 Aligned_cols=64 Identities=31% Similarity=0.529 Sum_probs=60.7
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccCC
Q 000281 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1728)
Q Consensus 31 k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~ 94 (1728)
|+||-||.||.+||..||..|.+|.||+..+|++||..++|++.+|+|||.|||+||||.++..
T Consensus 111 KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrErN~ 174 (351)
T KOG0486|consen 111 KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQ 174 (351)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhhhH
Confidence 7788899999999999999999999999999999999999999999999999999999976544
No 28
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=98.97 E-value=3.2e-10 Score=101.63 Aligned_cols=57 Identities=47% Similarity=0.803 Sum_probs=54.5
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhh
Q 000281 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1728)
Q Consensus 33 rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr 89 (1728)
++.|+.|+..|+..|+..|..++||+..++..||..+||+..+|++||+|||.+.++
T Consensus 1 ~~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 357889999999999999999999999999999999999999999999999999887
No 29
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=98.92 E-value=7.2e-10 Score=91.55 Aligned_cols=37 Identities=46% Similarity=0.744 Sum_probs=32.1
Q ss_pred ccccCCccCCCCceeecccCCCCCCCCCCceEEeccC
Q 000281 1116 RSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHD 1152 (1728)
Q Consensus 1116 R~~pLGkDR~~nRYW~F~~s~s~~dp~~gri~VE~~d 1152 (1728)
|.+|||+||++||||||..+...+...+++||||..+
T Consensus 1 R~~pLG~DR~~NrYwwf~~s~~~~~~~~~~~~v~~~~ 37 (38)
T PF15613_consen 1 RLKPLGKDRYGNRYWWFSSSSSNSQYYNGGRFVEQGP 37 (38)
T ss_pred CcccccccCCCceEEEEecccccCCCCCceEEEEeCC
Confidence 7899999999999999977666667779999999765
No 30
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=98.91 E-value=3.1e-10 Score=123.06 Aligned_cols=64 Identities=30% Similarity=0.518 Sum_probs=60.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccC
Q 000281 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1728)
Q Consensus 30 ~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~ 93 (1728)
++++..|.+|+..||..|+..|.+.+|+-.++|.+||..+||++.||+|||||||.||||+...
T Consensus 165 G~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 165 GQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred ccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhcc
Confidence 5778889999999999999999999999999999999999999999999999999999996543
No 31
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=98.87 E-value=8.8e-10 Score=121.95 Aligned_cols=61 Identities=34% Similarity=0.531 Sum_probs=56.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhcc
Q 000281 32 GKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1728)
Q Consensus 32 ~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~ 92 (1728)
...++.+||..|+..||..|+.+.|.....+..||..|||.++||.||||||||+||..+.
T Consensus 50 ~~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kql 110 (198)
T KOG0483|consen 50 GKGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQL 110 (198)
T ss_pred cccccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhh
Confidence 4556667999999999999999999999999999999999999999999999999998653
No 32
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.80 E-value=6.5e-09 Score=117.80 Aligned_cols=64 Identities=31% Similarity=0.386 Sum_probs=60.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhcc
Q 000281 29 GQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1728)
Q Consensus 29 ~~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~ 92 (1728)
..++|+.|+.|+..|+..|++.|..+|||+...|+.||..+++++..|||||||||+||+++..
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 3477999999999999999999999999999999999999999999999999999999999654
No 33
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=98.76 E-value=5.9e-09 Score=89.08 Aligned_cols=36 Identities=42% Similarity=0.675 Sum_probs=34.8
Q ss_pred EEEEcCHHHHHHHHHhc-CcCCcchHHHHHHHHHHHH
Q 000281 1155 WRLIDTVEAFDALLSSL-DARGTRESHLRIMLQKIET 1190 (1728)
Q Consensus 1155 W~~ydt~eeld~Ll~~L-d~rG~RE~~Lk~~L~k~~~ 1190 (1728)
|+||+++++||+||.|| ||||+||+.|+++|.+.+.
T Consensus 1 W~~~~~~e~ld~L~~aL~~prG~RE~~L~~~L~~~~k 37 (46)
T PF15614_consen 1 WGYYDDPEELDELLKALENPRGKRESKLKKELDKHRK 37 (46)
T ss_pred CccccCHHHHHHHHHHHcCcccHhHHHHHHHHHHHhc
Confidence 99999999999999999 9999999999999999883
No 34
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.65 E-value=5.3e-08 Score=117.57 Aligned_cols=66 Identities=30% Similarity=0.586 Sum_probs=61.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhccC
Q 000281 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1728)
Q Consensus 28 ~~~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~ 93 (1728)
..++.+|.||+|++.|+..|+..|..++||++..|++||.++++++..|+|||+|||+|++|....
T Consensus 172 ~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~~ 237 (354)
T KOG0849|consen 172 LQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHRD 237 (354)
T ss_pred ccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhcccc
Confidence 345677889999999999999999999999999999999999999999999999999999997643
No 35
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.55 E-value=3.2e-08 Score=111.40 Aligned_cols=75 Identities=29% Similarity=0.441 Sum_probs=65.0
Q ss_pred cccCCCCCCCCCCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhc
Q 000281 17 VVNNNNNNHSNEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEK 91 (1728)
Q Consensus 17 ~~~~~~~~~ss~~~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~ 91 (1728)
..+.+..+.--+++.+||+||++.......||..|..+|.|+......+|.+|.|...+|+|||||.|+|.||.+
T Consensus 294 K~~~pd~~~l~~~~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 294 KDTKPDINELLPGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred hccCCchhhccCccccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhh
Confidence 344443334445567899999999999999999999999999999999999999999999999999999999943
No 36
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=98.42 E-value=2.3e-07 Score=81.65 Aligned_cols=48 Identities=33% Similarity=0.414 Sum_probs=41.1
Q ss_pred hhhHhhcccccccCCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 000281 934 ESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAA 981 (1728)
Q Consensus 934 e~wl~~L~e~eY~dLsveeRL~aL~aLcdllLet~sIR~~LEerlE~a 981 (1728)
..|+..|..++|++|++++||.||++||+.++++.+||++|++|.|.+
T Consensus 3 ~~~~~~l~~~~y~~L~~~~kl~iL~~L~~~~l~s~~vr~~i~~~~e~~ 50 (50)
T PF15612_consen 3 PGLAPPLETGEYYELSPEEKLEILRALCDQLLSSSSVRNEIEEREEEQ 50 (50)
T ss_dssp GGG-CCCCCSTCCCS-HHHHHHHHHHHHHHHCC-CCHHHHHHHHHT--
T ss_pred hhhhHHHHcCCcccCCHHHHHHHHHHHHHHHcCcHHHHHHHHHhhccC
Confidence 358899999999999999999999999999999999999999998753
No 37
>PTZ00121 MAEBL; Provisional
Probab=98.39 E-value=1.6e-05 Score=104.30 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=8.5
Q ss_pred hhhhhhhhccCCc
Q 000281 1336 SIQCEEKTKLGLR 1348 (1728)
Q Consensus 1336 ~~~c~~k~~~~~~ 1348 (1728)
--.|..++=.+|.
T Consensus 1993 YynCmk~EF~dp~ 2005 (2084)
T PTZ00121 1993 YYDCMKEEFADKD 2005 (2084)
T ss_pred HHhhHHhhccCcc
Confidence 3567777766665
No 38
>PTZ00121 MAEBL; Provisional
Probab=98.22 E-value=6.2e-05 Score=99.10 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=6.3
Q ss_pred ccchhhhhhhhhc
Q 000281 1332 FSEHSIQCEEKTK 1344 (1728)
Q Consensus 1332 ~~~h~~~c~~k~~ 1344 (1728)
|..+.-.|=.|..
T Consensus 2001 F~dp~Y~CF~K~~ 2013 (2084)
T PTZ00121 2001 FADKDYKCFKKKE 2013 (2084)
T ss_pred ccCcchhhhcccC
Confidence 3344455655543
No 39
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=98.10 E-value=1.6e-06 Score=81.85 Aligned_cols=68 Identities=37% Similarity=0.517 Sum_probs=56.3
Q ss_pred cchhHHHHHHHhhhcCCCcchhHHHHHHHhhccccCCCCCCchhhHHHhhccccc----chhccCCCcccccCC
Q 000281 723 GTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTK----LFERIAPSTYCVRPA 792 (1728)
Q Consensus 723 gTvk~a~f~vls~~g~~gl~v~ela~~iqk~glrd~~ts~t~ea~i~~alsrd~~----Lfer~apsty~~r~~ 792 (1728)
+|++-||++||...| +.|+..||.+.|+..||-+.. +|||++.|+++|.+|++ .|.++.+++|+||.+
T Consensus 1 mt~~eaa~~vL~~~~-~pm~~~eI~~~i~~~~~~~~~-~k~p~~~i~a~ly~~~~~~d~~F~~vg~~~~~L~~w 72 (72)
T PF05066_consen 1 MTFKEAAYEVLEEAG-RPMTFKEIWEEIQERGLYKKS-GKTPEATIAAQLYTDIKNEDSRFVKVGPGRWGLRSW 72 (72)
T ss_dssp S-HHHHHHHHHHHH--S-EEHHHHHHHHHHHHTS----GGGGGHHHH-HHHHHHH-T-SS-EESSSSEEE-GGG
T ss_pred CCHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCCCCcc-cCCHHHHHHHHHHHHcccCCCCEEEeCCCcEEeeeC
Confidence 588999999999999 999999999999999999887 99999999999999998 999999999999854
No 40
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.07 E-value=6.5e-06 Score=93.42 Aligned_cols=51 Identities=31% Similarity=0.503 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhh
Q 000281 39 KTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1728)
Q Consensus 39 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr 89 (1728)
|...-...|...|.+++||+..++.+||+.+||+..||-.||.|||+++|-
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhh
Confidence 445567899999999999999999999999999999999999999999994
No 41
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.02 E-value=0.00018 Score=96.64 Aligned_cols=10 Identities=20% Similarity=0.056 Sum_probs=4.0
Q ss_pred HHHHHHHhCC
Q 000281 172 IACVEAQLGE 181 (1728)
Q Consensus 172 i~~ve~qlge 181 (1728)
+.+.+-..|.
T Consensus 231 ~ILYELLTGk 240 (1021)
T PTZ00266 231 CIIYELCSGK 240 (1021)
T ss_pred HHHHHHHHCC
Confidence 3334444443
No 42
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=97.96 E-value=0.00037 Score=86.88 Aligned_cols=17 Identities=24% Similarity=0.098 Sum_probs=9.8
Q ss_pred HHHHHhCCCccceeecc
Q 000281 64 ELSEKLGLSDRQLQMWF 80 (1728)
Q Consensus 64 eLA~~LgLserqVqVWF 80 (1728)
-+...+++...+.-|.|
T Consensus 42 ~~t~~~N~~~d~~~~d~ 58 (811)
T KOG4364|consen 42 SQTSSLNLEMDGLFDDF 58 (811)
T ss_pred cchhhhhcccchhHHHH
Confidence 34555566666666665
No 43
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.85 E-value=3.8e-05 Score=86.39 Aligned_cols=59 Identities=29% Similarity=0.529 Sum_probs=55.0
Q ss_pred CCCCCCcCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhh
Q 000281 32 GKPKRQMKTPFQLETLEKAY---ASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKE 90 (1728)
Q Consensus 32 ~rr~Rt~fT~~Ql~~LE~~F---~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~ 90 (1728)
.+|+|..|+..-.++|...| ..||||+...+++||.++|++..||..||.|.|-+.||-
T Consensus 188 arRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~ 249 (334)
T KOG0774|consen 188 ARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKN 249 (334)
T ss_pred HHHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhh
Confidence 37788999999999999999 468999999999999999999999999999999999983
No 44
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0012 Score=83.50 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=9.2
Q ss_pred CCCCCC-cccccCcHHHHH
Q 000281 333 DPYLLS-DGQTFNNDAEQR 350 (1728)
Q Consensus 333 ~p~~~~-~~~~~~~ke~~r 350 (1728)
.|.... ...+|++|.+.-
T Consensus 303 ep~kklP~~~TFEDKrkeN 321 (1118)
T KOG1029|consen 303 EPPKKLPAPVTFEDKRKEN 321 (1118)
T ss_pred CccccCCCCcchhhhhHHh
Confidence 343433 345788755443
No 45
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=97.69 E-value=0.0021 Score=80.60 Aligned_cols=7 Identities=14% Similarity=0.197 Sum_probs=2.7
Q ss_pred hhHHHHH
Q 000281 725 VKFAAFH 731 (1728)
Q Consensus 725 vk~a~f~ 731 (1728)
+|.-+||
T Consensus 479 mKaKlLq 485 (811)
T KOG4364|consen 479 MKAKLLQ 485 (811)
T ss_pred hHHHHhh
Confidence 3433333
No 46
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.44 E-value=0.011 Score=67.56 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000281 350 RMEKKRKCDEARIAREVE 367 (1728)
Q Consensus 350 r~Ek~rk~eeer~~ke~e 367 (1728)
+.++.++.+-++.+.+.+
T Consensus 278 raeerrqieterlrqeee 295 (445)
T KOG2891|consen 278 RAEERRQIETERLRQEEE 295 (445)
T ss_pred HHHHHhhhhHHHHhhhHh
Confidence 344455555555554443
No 47
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=97.27 E-value=0.037 Score=60.75 Aligned_cols=10 Identities=40% Similarity=0.617 Sum_probs=6.9
Q ss_pred CCCCCCCCCC
Q 000281 325 SHPIFGTEDP 334 (1728)
Q Consensus 325 ~~~~~~~~~p 334 (1728)
..+++|+.||
T Consensus 12 ~K~saGTtda 21 (171)
T PF05672_consen 12 GKPSAGTTDA 21 (171)
T ss_pred CCCCCCCCCH
Confidence 4567777776
No 48
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.19 E-value=0.00024 Score=80.85 Aligned_cols=65 Identities=35% Similarity=0.571 Sum_probs=60.5
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhcc
Q 000281 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1728)
Q Consensus 28 ~~~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~ 92 (1728)
...+.++.|+.++..|+..|...|..++||+...+..|+..+|++.+.|||||||+|++.++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 149 SNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred CccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 34577889999999999999999999999999999999999999999999999999999999544
No 49
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=96.75 E-value=0.00034 Score=59.25 Aligned_cols=34 Identities=35% Similarity=0.756 Sum_probs=28.8
Q ss_pred hcCCCCHHHHHHHHHHhCCCccceeeccccchhh
Q 000281 53 SETYPSESTRAELSEKLGLSDRQLQMWFCHRRLK 86 (1728)
Q Consensus 53 ~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK 86 (1728)
.+|||+..++..||..+||+..||..||-|.|.+
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 5799999999999999999999999999998853
No 50
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=96.57 E-value=0.12 Score=59.58 Aligned_cols=18 Identities=44% Similarity=0.931 Sum_probs=9.3
Q ss_pred HHhCCCccC--CCCccCCCC
Q 000281 177 AQLGEPLRE--DGPILGMEF 194 (1728)
Q Consensus 177 ~qlge~~re--dgP~lg~ef 194 (1728)
-.+|-|||+ .|-|.|+.|
T Consensus 193 ipicdplr~~mn~kisgiq~ 212 (445)
T KOG2891|consen 193 IPICDPLREEMNGKISGIQF 212 (445)
T ss_pred CcccchhHHHhcCcccccee
Confidence 344555554 455555555
No 51
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=96.57 E-value=0.0014 Score=81.35 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=53.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhh
Q 000281 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKD 87 (1728)
Q Consensus 30 ~k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~ 87 (1728)
-+.||+|.+||..|...|...|+.+++|+..+.+.|+.+|+|....|..||-|-|.+.
T Consensus 418 ~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 418 LQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred ccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 3568889999999999999999999999999999999999999999999999977554
No 52
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.11 Score=67.03 Aligned_cols=9 Identities=33% Similarity=0.515 Sum_probs=3.6
Q ss_pred cceeeccCC
Q 000281 1465 DASIMYVKP 1473 (1728)
Q Consensus 1465 Da~I~y~~~ 1473 (1728)
|+-..|...
T Consensus 911 D~f~~y~e~ 919 (1064)
T KOG1144|consen 911 DAFTKYIEE 919 (1064)
T ss_pred HHHHHHHHH
Confidence 333344433
No 53
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=95.74 E-value=0.36 Score=61.21 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=26.1
Q ss_pred CCchhHHHHHHHHHHHHHhCCCccCC--CCc----cCCCCCCCCCCCCCCCC
Q 000281 161 ESQQSIMELRAIACVEAQLGEPLRED--GPI----LGMEFDSLPPDAFGAPI 206 (1728)
Q Consensus 161 ~p~~~~~e~~ai~~ve~qlge~~red--gP~----lg~efdplPP~af~~pi 206 (1728)
.|...+-....|.-|=.-||+.+..+ +++ +-.-+||--...|+.-|
T Consensus 18 gp~~~~~t~~~i~~iG~~la~~~~~~~~~~~~~y~ii~~vd~~~~~~~~ADi 69 (489)
T PF05262_consen 18 GPHASIETAQQIRGIGSGLAEALKNGRAGSYGRYYIIHAVDPEEKKKLDADI 69 (489)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhcCCCCccCcEEEEEecCcccccCCCCcE
Confidence 44455555678888888888887643 222 11233444445556554
No 54
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.16 Score=65.57 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=13.0
Q ss_pred HhhhccCCCHHHHHHHHHHHHhhhhh
Q 000281 1393 GMKLNMSSSAEEVLQLLTILESGIKR 1418 (1728)
Q Consensus 1393 ~~~l~~ass~~ellq~l~~le~~ik~ 1418 (1728)
++++-.|..++-|+-+.+.+..-||+
T Consensus 897 gVkIF~adiIYhLfD~f~~y~e~~ke 922 (1064)
T KOG1144|consen 897 GVKIFCADIIYHLFDAFTKYIEEIKE 922 (1064)
T ss_pred CceeeehhHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555444444
No 55
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.59 E-value=0.44 Score=61.25 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=19.3
Q ss_pred cccCCCCHHHHHHHHh-ccchhHHH----HHHHHH
Q 000281 561 LGLWPFTLDEFVQAFH-DHESRLLG----EIHLAL 590 (1728)
Q Consensus 561 L~LspfTLddf~~AL~-~~ds~LL~----eiH~aL 590 (1728)
..|+...+.+|-.++. .-|-+||. |+|.-|
T Consensus 1065 YDl~~wkyaeLRDtINTS~DieLL~ACreEFhRRL 1099 (1259)
T KOG0163|consen 1065 YDLSKWKYAELRDTINTSCDIELLEACREEFHRRL 1099 (1259)
T ss_pred cccccccHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 4566777788888887 35556664 455543
No 56
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=95.58 E-value=0.015 Score=78.34 Aligned_cols=62 Identities=29% Similarity=0.511 Sum_probs=58.1
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhcc
Q 000281 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1728)
Q Consensus 31 k~rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~ 92 (1728)
.+++.||.++..||..|...|....||.....+-|...++++.+.|+|||||-|+|.++...
T Consensus 902 ~r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 902 GRRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999443
No 57
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=95.49 E-value=1.5 Score=57.65 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=10.0
Q ss_pred ccCCCCccCCCCCCCC
Q 000281 183 LREDGPILGMEFDSLP 198 (1728)
Q Consensus 183 ~redgP~lg~efdplP 198 (1728)
+++==-||-++|+||-
T Consensus 389 ~kdLY~iLEveF~PL~ 404 (988)
T KOG2072|consen 389 VKDLYNILEVEFHPLK 404 (988)
T ss_pred HHHHHHHHHhcCCHHH
Confidence 3444457778887774
No 58
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.33 E-value=0.41 Score=61.47 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=9.1
Q ss_pred hhhccCCccHHHHHHHHHHHh
Q 000281 640 WQQLLNPLTWHEIFRQLALSA 660 (1728)
Q Consensus 640 w~~~Ln~lTWpEILRq~lla~ 660 (1728)
|..|+|. +=|.||.-+-+
T Consensus 1172 WyaHFdG---q~I~RQm~l~~ 1189 (1259)
T KOG0163|consen 1172 WYAHFDG---QWIARQMELHP 1189 (1259)
T ss_pred EEEecCc---HHHHhhheecC
Confidence 4455443 34666654433
No 59
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=5.4 Score=49.40 Aligned_cols=9 Identities=44% Similarity=0.427 Sum_probs=4.3
Q ss_pred CccchhHHH
Q 000281 721 TPGTVKFAA 729 (1728)
Q Consensus 721 ~pgTvk~a~ 729 (1728)
.|||=|..+
T Consensus 392 PPGTGKTm~ 400 (630)
T KOG0742|consen 392 PPGTGKTMF 400 (630)
T ss_pred CCCCCchHH
Confidence 355555443
No 60
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=93.98 E-value=0.75 Score=57.51 Aligned_cols=8 Identities=38% Similarity=0.825 Sum_probs=3.1
Q ss_pred HHHHHhhc
Q 000281 47 LEKAYASE 54 (1728)
Q Consensus 47 LE~~F~~~ 54 (1728)
|++.|.+.
T Consensus 237 lEQpfaqD 244 (940)
T KOG4661|consen 237 LEQPFAQD 244 (940)
T ss_pred hhhhhhcc
Confidence 33334333
No 61
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=93.23 E-value=1.1 Score=56.71 Aligned_cols=15 Identities=33% Similarity=0.264 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhC
Q 000281 166 IMELRAIACVEAQLG 180 (1728)
Q Consensus 166 ~~e~~ai~~ve~qlg 180 (1728)
+...++|+.|+.-||
T Consensus 27 pdl~a~~as~~~~l~ 41 (591)
T KOG2412|consen 27 PDLVAEIASVEKKLN 41 (591)
T ss_pred hhHHHHhhhhhhhhc
Confidence 344577888887777
No 62
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=92.93 E-value=1.2 Score=56.33 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=7.6
Q ss_pred cHHHHHHHHHHHhCC
Q 000281 648 TWHEIFRQLALSAGF 662 (1728)
Q Consensus 648 TWpEILRq~lla~G~ 662 (1728)
|---||=.||-++||
T Consensus 521 ~tatll~s~Lq~aG~ 535 (591)
T KOG2412|consen 521 TTATLLNSFLQTAGF 535 (591)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444455555555554
No 63
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=92.50 E-value=9.1 Score=45.81 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhCC
Q 000281 650 HEIFRQLALSAGF 662 (1728)
Q Consensus 650 pEILRq~lla~G~ 662 (1728)
.+|-|.|+.+.-|
T Consensus 311 ~~Iq~rfl~~~sf 323 (387)
T COG3064 311 SAIQSRFLDADSF 323 (387)
T ss_pred HHHHHHHhccccc
Confidence 3555666665555
No 64
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=92.43 E-value=4.3 Score=44.63 Aligned_cols=7 Identities=71% Similarity=0.805 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 000281 417 EERSLRE 423 (1728)
Q Consensus 417 EEr~~rE 423 (1728)
++|..++
T Consensus 89 E~Rl~re 95 (157)
T PF15236_consen 89 EERLARE 95 (157)
T ss_pred HHHHHHH
Confidence 3333333
No 65
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=92.06 E-value=14 Score=44.33 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHh
Q 000281 582 LLGEIHLALLKSIIK 596 (1728)
Q Consensus 582 LL~eiH~aLLk~ll~ 596 (1728)
+.+-|-..|-+-++.
T Consensus 305 Yag~ik~~Iq~rfl~ 319 (387)
T COG3064 305 YAGQIKSAIQSRFLD 319 (387)
T ss_pred HHHHHHHHHHHHHhc
Confidence 444444444444444
No 66
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=91.51 E-value=19 Score=42.90 Aligned_cols=9 Identities=11% Similarity=0.047 Sum_probs=3.5
Q ss_pred cCCCCcccc
Q 000281 494 SKGLSSIIH 502 (1728)
Q Consensus 494 sk~l~s~~~ 502 (1728)
.+|.|....
T Consensus 235 ~kpkpvp~~ 243 (264)
T PF13904_consen 235 NKPKPVPLN 243 (264)
T ss_pred cCCCCCCcC
Confidence 334444333
No 67
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=90.80 E-value=0.98 Score=58.67 Aligned_cols=9 Identities=44% Similarity=0.770 Sum_probs=6.2
Q ss_pred hccccchhh
Q 000281 631 YAWGFDIRN 639 (1728)
Q Consensus 631 ~~wg~~~~~ 639 (1728)
.++||+|+.
T Consensus 839 ~afgF~is~ 847 (1102)
T KOG1924|consen 839 QAFGFNISF 847 (1102)
T ss_pred hhhccchHH
Confidence 367887765
No 68
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.55 E-value=1.8 Score=49.85 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=13.5
Q ss_pred HHHhhhhccccC-CCCHHHHHHHHhc
Q 000281 553 FFITFADVLGLW-PFTLDEFVQAFHD 577 (1728)
Q Consensus 553 FL~~F~~~L~Ls-pfTLddf~~AL~~ 577 (1728)
||.-|-+.+.-. ...|+||..++.-
T Consensus 201 ll~eFv~YIk~nKvV~ledLas~f~L 226 (299)
T KOG3054|consen 201 LLSEFVEYIKKNKVVPLEDLASEFGL 226 (299)
T ss_pred HHHHHHHHHHhcCeeeHHHHHHHhCc
Confidence 444444444443 3457777766664
No 69
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.40 E-value=2.1 Score=49.26 Aligned_cols=7 Identities=43% Similarity=0.767 Sum_probs=3.9
Q ss_pred chhHHHH
Q 000281 742 TVLELAD 748 (1728)
Q Consensus 742 ~v~ela~ 748 (1728)
+|.|||.
T Consensus 276 SIaelAe 282 (299)
T KOG3054|consen 276 SIAELAE 282 (299)
T ss_pred eHHHHHH
Confidence 4555555
No 70
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=89.90 E-value=29 Score=43.85 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=22.5
Q ss_pred hhhhhhhccccchhhhhhccCCccHHHHHHHHHHHhCCCCcc
Q 000281 625 RIIEGAYAWGFDIRNWQQLLNPLTWHEIFRQLALSAGFGPKL 666 (1728)
Q Consensus 625 ~~~~~a~~wg~~~~~w~~~Ln~lTWpEILRq~lla~G~g~~~ 666 (1728)
+|+-++|.-||.++. .-..+|=+|.+|..+ |.||..
T Consensus 616 ~FliLfrds~cqfra---lyT~~~ETeei~kl~---gmgpk~ 651 (708)
T KOG3654|consen 616 HFLILFRDSGCQFRA---LYTYMPETEEIRKLT---GMGPKM 651 (708)
T ss_pred hhhhhhhhccceeec---ccccCccHHHHhhhh---ccCchh
Confidence 344444444776654 467788888888753 677765
No 71
>PRK00106 hypothetical protein; Provisional
Probab=88.73 E-value=42 Score=43.91 Aligned_cols=9 Identities=11% Similarity=0.287 Sum_probs=3.8
Q ss_pred HHHHHHHhc
Q 000281 701 AFAWMREKG 709 (1728)
Q Consensus 701 ~~~~m~~~g 709 (1728)
...+++++|
T Consensus 401 Ga~ll~~~~ 409 (535)
T PRK00106 401 GMEFARKYK 409 (535)
T ss_pred HHHHHHHcC
Confidence 334444444
No 72
>PRK12704 phosphodiesterase; Provisional
Probab=87.11 E-value=88 Score=41.00 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=11.4
Q ss_pred ccCCCCHHHHHHHHh
Q 000281 562 GLWPFTLDEFVQAFH 576 (1728)
Q Consensus 562 ~LspfTLddf~~AL~ 576 (1728)
.+.||..++++....
T Consensus 278 ~i~P~~iee~~~~~~ 292 (520)
T PRK12704 278 RIHPARIEEMVEKAR 292 (520)
T ss_pred CcCCCCHHHHHHHHH
Confidence 567888888877665
No 73
>PRK12704 phosphodiesterase; Provisional
Probab=85.96 E-value=49 Score=43.29 Aligned_cols=6 Identities=50% Similarity=0.440 Sum_probs=2.2
Q ss_pred HHHHHH
Q 000281 957 LVALIG 962 (1728)
Q Consensus 957 L~aLcd 962 (1728)
++.++|
T Consensus 419 IV~~AD 424 (520)
T PRK12704 419 LVAAAD 424 (520)
T ss_pred HHHHHH
Confidence 333333
No 74
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=85.61 E-value=84 Score=42.43 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=10.8
Q ss_pred CCCCCCCCcCCHHHH
Q 000281 30 QQGKPKRQMKTPFQL 44 (1728)
Q Consensus 30 ~k~rr~Rt~fT~~Ql 44 (1728)
.+-+-.|+.+|+|-.
T Consensus 139 sqdR~DR~lltPWlk 153 (988)
T KOG2072|consen 139 SQDRSDRELLTPWLK 153 (988)
T ss_pred cccccchHHHHHHHH
Confidence 455777899998743
No 75
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=83.46 E-value=0.41 Score=43.74 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccch
Q 000281 44 LETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRR 84 (1728)
Q Consensus 44 l~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRR 84 (1728)
+..|+..|...+++.......|..+.+|+..||+.||-.|+
T Consensus 10 ~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 10 IQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp -HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 45699999999999999999999999999999999996554
No 76
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=82.30 E-value=1.3 Score=57.20 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhhhcc
Q 000281 39 KTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1728)
Q Consensus 39 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~ 92 (1728)
|+.. +..|...|..|.+|+..+...+|.+.||+.+.|+.||++++++.....+
T Consensus 564 ~~~p-~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv~r 616 (1007)
T KOG3623|consen 564 FNHP-TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSVER 616 (1007)
T ss_pred cCCc-HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhhcc
Confidence 4444 8889999999999999999999999999999999999999999888543
No 77
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=81.17 E-value=1.8 Score=50.25 Aligned_cols=9 Identities=33% Similarity=0.785 Sum_probs=3.5
Q ss_pred cCCCCCccc
Q 000281 1312 EDAHCPSCH 1320 (1728)
Q Consensus 1312 ~e~hC~~CH 1320 (1728)
++..|..|+
T Consensus 50 nRAFCYFC~ 58 (314)
T PF06524_consen 50 NRAFCYFCQ 58 (314)
T ss_pred ccceeehhh
Confidence 333444443
No 78
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.04 E-value=2.2e+02 Score=37.94 Aligned_cols=74 Identities=18% Similarity=0.150 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCccCCCCcc---CCCCCCCCCCCCCCCC-C--CcccccCCCCCcccccccccccccCccc--cCccCCC
Q 000281 171 AIACVEAQLGEPLREDGPIL---GMEFDSLPPDAFGAPI-G--SSEQQKRSGHPYESKIYDRYDTKSNKVI--PRAHHEY 242 (1728)
Q Consensus 171 ai~~ve~qlge~~redgP~l---g~efdplPP~af~~pi-~--~~~q~k~p~~~y~~k~y~~~~~~~~k~~--~r~~~~~ 242 (1728)
+..+|.+.+|.|.+.-.-++ .|+---||-.---+|. . .|+-.++||... ++...|++..++.. +.++++|
T Consensus 622 ~A~~~~~~~~~~~QdaS~~~t~~d~~k~e~~vs~~~~p~~t~~S~P~~~q~v~~~--ss~v~~~~ge~k~~vgt~a~~e~ 699 (1187)
T KOG0579|consen 622 EAEAVNALFKKPSQDASASLTVRDMAKTELRVSSASTPTKTRASPPKRAQSVRTS--SSVVQHSAGESKDYVGTSAVPEY 699 (1187)
T ss_pred HHHHHHHhhcCchhhhhhhhhhhhhhhhhcccccccCCcccccCCCCcccccccc--hhhhhccccccccccccccCccc
Confidence 55668889998866533222 2222223333333343 1 233333455543 33444555544443 3556665
Q ss_pred CCCC
Q 000281 243 QSLS 246 (1728)
Q Consensus 243 q~~P 246 (1728)
.--|
T Consensus 700 ~~pP 703 (1187)
T KOG0579|consen 700 FDPP 703 (1187)
T ss_pred cCCh
Confidence 4333
No 79
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=78.02 E-value=1.5 Score=54.38 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=8.7
Q ss_pred cCCCccCCCCCCCCC
Q 000281 1701 EGNIDMSEASDQNGI 1715 (1728)
Q Consensus 1701 ~~d~~~~~~~~~~~~ 1715 (1728)
++..+.++.+|||--
T Consensus 89 ~~~~~~~~~ddG~~T 103 (458)
T PF10446_consen 89 STVHDFDSDDDGNET 103 (458)
T ss_pred cccccccccccCccC
Confidence 333456667888444
No 80
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.55 E-value=1.1e+02 Score=36.42 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=4.4
Q ss_pred cchhhhcccch
Q 000281 687 DIVSTIRNGSA 697 (1728)
Q Consensus 687 d~~~~~~~g~~ 697 (1728)
.-+..||.|++
T Consensus 226 ~tl~~i~~g~t 236 (246)
T PF00769_consen 226 KTLRQIRQGNT 236 (246)
T ss_dssp HHHHHHT-S-H
T ss_pred HHHHHHhcCCH
Confidence 33445555655
No 81
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=77.48 E-value=12 Score=47.04 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHH
Q 000281 581 RLLGEIHLALLKSII 595 (1728)
Q Consensus 581 ~LL~eiH~aLLk~ll 595 (1728)
.-|.++|..||-+|-
T Consensus 508 ~tl~sv~~~~lcaid 522 (708)
T KOG3654|consen 508 ETLESVHSGLLCAID 522 (708)
T ss_pred CChHhhhhhhhcccc
Confidence 356677777665553
No 82
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.42 E-value=1.8e+02 Score=39.55 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=6.4
Q ss_pred HHHHHHHhCCCc
Q 000281 62 RAELSEKLGLSD 73 (1728)
Q Consensus 62 R~eLA~~LgLse 73 (1728)
|---|..+|.+.
T Consensus 152 ~~~~ah~igypv 163 (697)
T PF09726_consen 152 RPFAAHCIGYPV 163 (697)
T ss_pred ccHHHhhcCCce
Confidence 333466666554
No 83
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=76.95 E-value=2.2e+02 Score=36.22 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=10.5
Q ss_pred HHHHhhhcCCCcchhHHHHHH-Hhhcc
Q 000281 730 FHVLSLEGSKGLTVLELADKI-QKSGL 755 (1728)
Q Consensus 730 f~vls~~g~~gl~v~ela~~i-qk~gl 755 (1728)
|.-.-.-|+.|..-.=.|+.| ++|||
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SGl 410 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSGL 410 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcCC
Confidence 333334444444433333333 23444
No 84
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=76.55 E-value=1.9 Score=52.84 Aligned_cols=58 Identities=22% Similarity=0.337 Sum_probs=46.9
Q ss_pred CCCCCCcCCHHHHHHHHHH-Hh--hcCCCCHHHHHHHHHHhCCCccceeeccccchhhhhh
Q 000281 32 GKPKRQMKTPFQLETLEKA-YA--SETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1728)
Q Consensus 32 ~rr~Rt~fT~~Ql~~LE~~-F~--~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr 89 (1728)
++|++..+......+|+.- |. ..|||+...+..||.++||+..||..||-|.|-+..+
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~ 299 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWK 299 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCC
Confidence 4555567888888888754 22 2589999999999999999999999999999866655
No 85
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=76.15 E-value=54 Score=40.59 Aligned_cols=9 Identities=33% Similarity=0.704 Sum_probs=3.7
Q ss_pred CHHHHHHHH
Q 000281 567 TLDEFVQAF 575 (1728)
Q Consensus 567 TLddf~~AL 575 (1728)
+|++|-.-|
T Consensus 417 ~leefkrri 425 (442)
T PF06637_consen 417 SLEEFKRRI 425 (442)
T ss_pred HHHHHHHHH
Confidence 344443333
No 86
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=75.32 E-value=1.8e+02 Score=34.50 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=3.2
Q ss_pred HHHHhChh
Q 000281 592 KSIIKDIE 599 (1728)
Q Consensus 592 k~ll~d~e 599 (1728)
+.|-.+++
T Consensus 192 ~~L~~EL~ 199 (246)
T PF00769_consen 192 KELKSELE 199 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 87
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=73.70 E-value=34 Score=42.83 Aligned_cols=9 Identities=33% Similarity=0.386 Sum_probs=5.6
Q ss_pred hhhhHHHHH
Q 000281 547 LLMVWRFFI 555 (1728)
Q Consensus 547 LL~VweFL~ 555 (1728)
|-||-+|.+
T Consensus 337 L~~vr~yvr 345 (506)
T KOG2507|consen 337 LRMVRDYVR 345 (506)
T ss_pred HHHHHHHHH
Confidence 556666666
No 88
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.64 E-value=2.5 Score=55.80 Aligned_cols=10 Identities=20% Similarity=0.577 Sum_probs=4.5
Q ss_pred cccccccccc
Q 000281 1592 SKNETFQGQM 1601 (1728)
Q Consensus 1592 ~~~~~~~g~~ 1601 (1728)
.+.+..||.+
T Consensus 1368 ~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1368 EPTDSFLGVI 1377 (1516)
T ss_pred CCccceEEEE
Confidence 3444444444
No 89
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=72.69 E-value=3.3 Score=55.77 Aligned_cols=12 Identities=17% Similarity=0.122 Sum_probs=7.2
Q ss_pred HHHHHHHHhCCC
Q 000281 171 AIACVEAQLGEP 182 (1728)
Q Consensus 171 ai~~ve~qlge~ 182 (1728)
+..+|...|-+.
T Consensus 219 VNeAVNNLLSRD 230 (3015)
T KOG0943|consen 219 VNEAVNNLLSRD 230 (3015)
T ss_pred HHHHHHhhhccc
Confidence 555677776543
No 90
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=70.90 E-value=1.3 Score=49.87 Aligned_cols=40 Identities=8% Similarity=0.249 Sum_probs=21.3
Q ss_pred HHHhhhhccccCC-CCHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Q 000281 553 FFITFADVLGLWP-FTLDEFVQAFHDHESRLLGEIHLALLKSIIKD 597 (1728)
Q Consensus 553 FL~~F~~~L~Lsp-fTLddf~~AL~~~ds~LL~eiH~aLLk~ll~d 597 (1728)
||..|-..+...- ..|+||...+.-..... +.-|+.|..+
T Consensus 100 lL~~Fi~yIK~~Kvv~ledla~~f~l~t~~~-----i~ri~~L~~~ 140 (188)
T PF09756_consen 100 LLQEFINYIKEHKVVNLEDLAAEFGLRTQDV-----INRIQELEAE 140 (188)
T ss_dssp HHHHHHHHHHH-SEE-HHHHHHHH-S-HHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHcceeeHHHHHHHcCCCHHHH-----HHHHHHHHHC
Confidence 5556666666654 46889888887554333 3445555553
No 91
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=69.65 E-value=3.2 Score=54.89 Aligned_cols=35 Identities=26% Similarity=0.169 Sum_probs=18.1
Q ss_pred CchhhHhhcccccccCCCHHHHHHHHHHHHHHHhc
Q 000281 932 PGESWIQGLAEGDYSHLSVEERLNALVALIGIANE 966 (1728)
Q Consensus 932 ~Ge~wl~~L~e~eY~dLsveeRL~aL~aLcdllLe 966 (1728)
.|=.-+.....|.|+..+++.+.-||.+|++.+--
T Consensus 658 dGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~ 692 (1516)
T KOG1832|consen 658 DGIAIILDAANGSNSIVDPEIIQPALNVIINCVCP 692 (1516)
T ss_pred CceEEEeecccccccccCHHHHHHHHhhhheeecC
Confidence 34344444555555555555555555555554443
No 92
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=68.61 E-value=21 Score=47.26 Aligned_cols=20 Identities=25% Similarity=0.047 Sum_probs=8.8
Q ss_pred CCccCCCCCCCCCCCCCCCC
Q 000281 187 GPILGMEFDSLPPDAFGAPI 206 (1728)
Q Consensus 187 gP~lg~efdplPP~af~~pi 206 (1728)
+|+.|+-.-|.||.+.|+|=
T Consensus 574 ppppg~~gppPPPpp~g~~G 593 (1102)
T KOG1924|consen 574 PPPPGGGGPPPPPPPGGFLG 593 (1102)
T ss_pred CCCCCCCCCCCcCCCCCCCC
Confidence 34444444444444444443
No 93
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=67.75 E-value=2.6e+02 Score=35.39 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=4.1
Q ss_pred HHHHHhhcC
Q 000281 47 LEKAYASET 55 (1728)
Q Consensus 47 LE~~F~~~~ 55 (1728)
|-..|.+|-
T Consensus 121 l~etY~~cD 129 (518)
T KOG1830|consen 121 LTETYAQCD 129 (518)
T ss_pred HHHHHhccC
Confidence 344455443
No 94
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=67.58 E-value=84 Score=44.62 Aligned_cols=7 Identities=43% Similarity=0.961 Sum_probs=4.2
Q ss_pred eccccch
Q 000281 78 MWFCHRR 84 (1728)
Q Consensus 78 VWFQNRR 84 (1728)
-||+-=|
T Consensus 1739 ~wFgTvR 1745 (2220)
T KOG3598|consen 1739 KWFGTVR 1745 (2220)
T ss_pred eeeeeee
Confidence 4777544
No 95
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=65.87 E-value=4.3e+02 Score=34.96 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 000281 460 RKVAIEKATARKMAKESMDLIEDEQLELMDLA 491 (1728)
Q Consensus 460 ~k~~eEr~~~~r~ake~~e~~e~E~lel~kl~ 491 (1728)
+.++.||+.-..+.++.++-+++.+.++...+
T Consensus 427 rv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 427 RVAQKEKEQLQEEKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555666666666666777766665554
No 96
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=65.46 E-value=44 Score=43.21 Aligned_cols=10 Identities=20% Similarity=0.577 Sum_probs=5.9
Q ss_pred CHHHHHHHHh
Q 000281 567 TLDEFVQAFH 576 (1728)
Q Consensus 567 TLddf~~AL~ 576 (1728)
.|+.+..||.
T Consensus 389 rleqyt~a~~ 398 (492)
T PF02029_consen 389 RLEQYTSAIE 398 (492)
T ss_pred hHHHHHHHhh
Confidence 3566666665
No 97
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=65.20 E-value=2.8e+02 Score=35.47 Aligned_cols=9 Identities=44% Similarity=0.936 Sum_probs=5.9
Q ss_pred hhccCCccH
Q 000281 641 QQLLNPLTW 649 (1728)
Q Consensus 641 ~~~Ln~lTW 649 (1728)
.+.+||.+|
T Consensus 409 G~pvnP~pW 417 (420)
T COG4942 409 GQPVNPQPW 417 (420)
T ss_pred CCcCCchhh
Confidence 356777777
No 98
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=64.99 E-value=26 Score=45.15 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=4.3
Q ss_pred chhhhhhh
Q 000281 83 RRLKDKKE 90 (1728)
Q Consensus 83 RRaK~Kr~ 90 (1728)
||++..++
T Consensus 13 RRARqeR~ 20 (492)
T PF02029_consen 13 RRARQERL 20 (492)
T ss_pred HHHHHHHH
Confidence 55555553
No 99
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=64.76 E-value=2.1 Score=55.33 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=2.6
Q ss_pred ccCCCCcchH
Q 000281 1445 PILPWIPKTT 1454 (1728)
Q Consensus 1445 ~~~~~~p~T~ 1454 (1728)
..|.|++.+-
T Consensus 457 itlSWk~~~~ 466 (556)
T PF05918_consen 457 ITLSWKEAKK 466 (556)
T ss_dssp ---TTS----
T ss_pred cceeeeeccc
Confidence 5688888877
No 100
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=62.93 E-value=5.5e+02 Score=35.16 Aligned_cols=8 Identities=38% Similarity=0.463 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 000281 347 AEQRMEKK 354 (1728)
Q Consensus 347 e~~r~Ek~ 354 (1728)
...++|.+
T Consensus 419 a~~rLE~d 426 (697)
T PF09726_consen 419 AISRLEAD 426 (697)
T ss_pred HHHHHHHH
Confidence 33444433
No 101
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=62.70 E-value=2.5e+02 Score=33.88 Aligned_cols=29 Identities=34% Similarity=0.328 Sum_probs=13.1
Q ss_pred HHhCCCccCCCCccCCCCCCCCCCCCCCCC
Q 000281 177 AQLGEPLREDGPILGMEFDSLPPDAFGAPI 206 (1728)
Q Consensus 177 ~qlge~~redgP~lg~efdplPP~af~~pi 206 (1728)
++|+--.+..+|+.++ |-++.++.+-.++
T Consensus 16 a~~~~~~~~~~p~~~~-~~~~~~~~~~~~~ 44 (269)
T KOG3119|consen 16 AQLGQRARPLPPVFGP-ERELDLDAGLEAL 44 (269)
T ss_pred ccccccccCCCCCCcc-cccccccccchhc
Confidence 3444444455555554 4344444443333
No 102
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=62.41 E-value=6.8 Score=35.45 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=35.9
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeccccc
Q 000281 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHR 83 (1728)
Q Consensus 33 rr~Rt~fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNR 83 (1728)
||+|..+|-.+-..+-..++..+ ....||..+|++..+|.-|..|+
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 57899999999888888888776 57889999999999999998775
No 103
>PRK12705 hypothetical protein; Provisional
Probab=61.63 E-value=5e+02 Score=34.23 Aligned_cols=11 Identities=18% Similarity=0.021 Sum_probs=6.0
Q ss_pred HHHHHHHHHhc
Q 000281 699 ENAFAWMREKG 709 (1728)
Q Consensus 699 ~~~~~~m~~~g 709 (1728)
.....+++++|
T Consensus 372 ~iGaeLlkk~~ 382 (508)
T PRK12705 372 EIGAELARKFN 382 (508)
T ss_pred HHHHHHHHhcC
Confidence 34555566655
No 104
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=60.27 E-value=7.3e+02 Score=35.71 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhhh
Q 000281 1403 EEVLQLLTILESGIK 1417 (1728)
Q Consensus 1403 ~ellq~l~~le~~ik 1417 (1728)
..++|+|-+++|+..
T Consensus 1176 p~~fq~l~~~~~~~~ 1190 (1317)
T KOG0612|consen 1176 PRIFQILYANEGESG 1190 (1317)
T ss_pred chhHHHHHhhccccc
Confidence 667777777777733
No 105
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=58.30 E-value=1.3e+02 Score=41.53 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=11.2
Q ss_pred hhhhccccCCCCHHHHH
Q 000281 556 TFADVLGLWPFTLDEFV 572 (1728)
Q Consensus 556 ~F~~~L~LspfTLddf~ 572 (1728)
.+...|.|-.++.++-.
T Consensus 702 ~~~~~lDL~G~~~eeA~ 718 (782)
T PRK00409 702 TVSLELDLRGMRYEEAL 718 (782)
T ss_pred CCCceEECCCCCHHHHH
Confidence 45567777788776543
No 106
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.71 E-value=3.1e+02 Score=37.79 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=26.1
Q ss_pred cchHHHHHHHHHHHHHHhcCChhHHhhhhchhHHHHHHhhhccCCCHHHHH
Q 000281 1356 SLPLGIRLLKPLSAVIEAYIPPEALEASWTDERRKTWGMKLNMSSSAEEVL 1406 (1728)
Q Consensus 1356 ~lp~~l~~LK~~l~~iEa~lp~eAl~~~W~~~~rk~W~~~l~~ass~~ell 1406 (1728)
.||--|.+|=+-+++|.= .++|++.=+...-|+|...+-++=++++++
T Consensus 807 ILPeslKLlPly~la~lK---s~~l~~~~~~~DdRi~~~~~v~sl~v~~~~ 854 (1007)
T KOG1984|consen 807 ILPESLKLLPLYMLALLK---SSALRPQEIRTDDRIYQLQLVTSLSVEQLM 854 (1007)
T ss_pred echhhhHHHHHHHHHHHH---hhcccccccccchhHHHHHHhhcccHHhhh
Confidence 567777777777777654 356664222233344444444444455543
No 107
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=57.52 E-value=9.2 Score=52.47 Aligned_cols=7 Identities=0% Similarity=0.211 Sum_probs=2.9
Q ss_pred cccccCc
Q 000281 1597 FQGQMGH 1603 (1728)
Q Consensus 1597 ~~g~~~~ 1603 (1728)
+|-.|++
T Consensus 254 ~vrel~f 260 (840)
T PF04147_consen 254 LVRELAF 260 (840)
T ss_pred HHHHhcc
Confidence 4444443
No 108
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=56.77 E-value=2.5e+02 Score=38.76 Aligned_cols=16 Identities=19% Similarity=-0.024 Sum_probs=8.6
Q ss_pred hhhhccccCCCCHHHH
Q 000281 556 TFADVLGLWPFTLDEF 571 (1728)
Q Consensus 556 ~F~~~L~LspfTLddf 571 (1728)
.+...|.|-.++.++-
T Consensus 691 ~~~~~ldl~G~~~~eA 706 (771)
T TIGR01069 691 EASLTLDLRGQRSEEA 706 (771)
T ss_pred CCCceEECCCCCHHHH
Confidence 3445556666665543
No 109
>PLN03086 PRLI-interacting factor K; Provisional
Probab=55.95 E-value=50 Score=43.44 Aligned_cols=11 Identities=36% Similarity=0.598 Sum_probs=6.4
Q ss_pred cccchhhhhhh
Q 000281 1331 KFSEHSIQCEE 1341 (1728)
Q Consensus 1331 ~~~~h~~~c~~ 1341 (1728)
.+..|..+|-.
T Consensus 529 ~Lt~HE~~CG~ 539 (567)
T PLN03086 529 GMSEHESICGS 539 (567)
T ss_pred hHHHHHHhcCC
Confidence 44467766643
No 110
>PTZ00491 major vault protein; Provisional
Probab=55.47 E-value=5e+02 Score=35.98 Aligned_cols=8 Identities=38% Similarity=0.410 Sum_probs=3.7
Q ss_pred HHHHHhCC
Q 000281 174 CVEAQLGE 181 (1728)
Q Consensus 174 ~ve~qlge 181 (1728)
.||..|..
T Consensus 420 ~ve~lL~~ 427 (850)
T PTZ00491 420 NVEELLAQ 427 (850)
T ss_pred HHHHHHhc
Confidence 34444443
No 111
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.15 E-value=6.7e+02 Score=33.67 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000281 971 RAVLEDRLEAANALKKQMWAE 991 (1728)
Q Consensus 971 R~~LEerlE~a~aLkkq~r~e 991 (1728)
+..|+.-+|..+++....|..
T Consensus 827 ~~ql~qEle~l~ayq~k~k~~ 847 (948)
T KOG0577|consen 827 REQLEQELELLNAYQSKIKMQ 847 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554443
No 112
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=53.55 E-value=8.1 Score=49.14 Aligned_cols=7 Identities=43% Similarity=1.056 Sum_probs=4.4
Q ss_pred hhccccc
Q 000281 1620 EEWGVGK 1626 (1728)
Q Consensus 1620 e~w~~~~ 1626 (1728)
-||.+.|
T Consensus 190 VDWAV~K 196 (678)
T KOG0127|consen 190 VDWAVDK 196 (678)
T ss_pred Eeeeccc
Confidence 4576665
No 113
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=53.26 E-value=3.7e+02 Score=37.26 Aligned_cols=8 Identities=50% Similarity=0.887 Sum_probs=4.0
Q ss_pred hcCCCcch
Q 000281 736 EGSKGLTV 743 (1728)
Q Consensus 736 ~g~~gl~v 743 (1728)
+|..|.||
T Consensus 771 ~GG~Gat~ 778 (782)
T PRK00409 771 EGGFGVTI 778 (782)
T ss_pred cCCCeEEE
Confidence 45555554
No 114
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=52.48 E-value=1.3e+02 Score=38.14 Aligned_cols=10 Identities=20% Similarity=0.574 Sum_probs=4.5
Q ss_pred CCHHHHHHHH
Q 000281 566 FTLDEFVQAF 575 (1728)
Q Consensus 566 fTLddf~~AL 575 (1728)
||=+|+..-|
T Consensus 366 ft~eDy~Ktl 375 (506)
T KOG2507|consen 366 FTDEDYDKTL 375 (506)
T ss_pred ccchhhhhhH
Confidence 4445544333
No 115
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=51.46 E-value=4.8 Score=31.07 Aligned_cols=23 Identities=30% Similarity=0.875 Sum_probs=18.7
Q ss_pred CCCCccccccccCCCcccccchhhhhh
Q 000281 1314 AHCPSCHRTFGAVDKSSKFSEHSIQCE 1340 (1728)
Q Consensus 1314 ~hC~~CH~tf~~~d~e~~~~~h~~~c~ 1340 (1728)
..|++|.++|.. ..+.+|...|+
T Consensus 3 ~~C~~CgR~F~~----~~l~~H~~~C~ 25 (25)
T PF13913_consen 3 VPCPICGRKFNP----DRLEKHEKICK 25 (25)
T ss_pred CcCCCCCCEECH----HHHHHHHHhcC
Confidence 469999999975 47779988884
No 116
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=51.11 E-value=6.5e+02 Score=32.36 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=4.7
Q ss_pred HHhhhhccc
Q 000281 554 FITFADVLG 562 (1728)
Q Consensus 554 L~~F~~~L~ 562 (1728)
|+.||...+
T Consensus 308 l~rFG~~~~ 316 (420)
T COG4942 308 LRRFGQADG 316 (420)
T ss_pred HHHhcccCC
Confidence 455655543
No 117
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=50.89 E-value=11 Score=51.59 Aligned_cols=8 Identities=13% Similarity=0.638 Sum_probs=3.3
Q ss_pred HHhhhhch
Q 000281 1379 ALEASWTD 1386 (1728)
Q Consensus 1379 Al~~~W~~ 1386 (1728)
.++..|..
T Consensus 507 ~~~~~~~~ 514 (784)
T PF04931_consen 507 EQQQAWKT 514 (784)
T ss_pred HHHHHHHH
Confidence 34444433
No 118
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=50.72 E-value=3.6e+02 Score=37.32 Aligned_cols=11 Identities=18% Similarity=-0.034 Sum_probs=5.5
Q ss_pred ccCCccHHHHH
Q 000281 643 LLNPLTWHEIF 653 (1728)
Q Consensus 643 ~Ln~lTWpEIL 653 (1728)
+|-.+|--|-+
T Consensus 697 dl~G~~~~eA~ 707 (771)
T TIGR01069 697 DLRGQRSEEAL 707 (771)
T ss_pred ECCCCCHHHHH
Confidence 34445555544
No 119
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.48 E-value=11 Score=46.39 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=20.4
Q ss_pred HHHHHHHHhhh-hHHHH-HHhhhccccchhhhhccccccccccc-ccc
Q 000281 1259 IEKKAALERFQ-DFQWW-MWRECFNSLSLCASKNEKTRCRQLLV-ICD 1303 (1728)
Q Consensus 1259 ~e~~~~~~r~~-~f~~w-mw~~~~~~~~l~a~k~Gkk~~~~~l~-~C~ 1303 (1728)
.|..+++.|.+ ..+.| +...-|+...-.+-+|-||-..+-++ +|+
T Consensus 6 ~e~~~a~~~~~~ete~~~~v~~dye~~~erl~~~~kkLs~~Imvpig~ 53 (514)
T KOG3130|consen 6 AECNAAKARLEVETECRKKVDNDYEALRERLSTLPKKLSYNIMVPIGP 53 (514)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHhhhhcccceeeeccc
Confidence 34444444433 23333 22333443334566788885444443 444
No 120
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.41 E-value=9.7e+02 Score=32.46 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=13.1
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHhC
Q 000281 572 VQAFHDHESRLLGEIHLALLKSIIKD 597 (1728)
Q Consensus 572 ~~AL~~~ds~LL~eiH~aLLk~ll~d 597 (1728)
++||-.-+-.-|.|-|. |++.+++|
T Consensus 970 EaaiWElEe~qlqEkhq-L~kqqlKD 994 (1187)
T KOG0579|consen 970 EAAIWELEEKQLQEKHQ-LHKQQLKD 994 (1187)
T ss_pred HHHHhHhHHHHHHHHHH-HHHHHHHH
Confidence 34444323345666664 56666665
No 121
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=43.48 E-value=8.3e+02 Score=31.37 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=23.4
Q ss_pred hhhhHHHHHhhhhcc--ccCCCCHHHHHHHHhccc
Q 000281 547 LLMVWRFFITFADVL--GLWPFTLDEFVQAFHDHE 579 (1728)
Q Consensus 547 LL~VweFL~~F~~~L--~LspfTLddf~~AL~~~d 579 (1728)
+|.-|.|+.+|..-| .++.++=++|.+||....
T Consensus 440 ~lkn~ha~~~~~~Slaaeid~~sqdeLmqafqeqe 474 (502)
T KOG0982|consen 440 FLKNWHATFSLFFSLAAEIDEMSQDELMQAFQEQE 474 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456677777766655 345678899999999633
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=42.72 E-value=1.6e+02 Score=40.33 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=21.5
Q ss_pred cCCchhHHHHHHHHHHHHHhCCCccCCCCccCCCC
Q 000281 160 YESQQSIMELRAIACVEAQLGEPLREDGPILGMEF 194 (1728)
Q Consensus 160 y~p~~~~~e~~ai~~ve~qlge~~redgP~lg~ef 194 (1728)
|.+++-+.-+.++++++..-|.|+=..---+.+.|
T Consensus 493 yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 493 YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 34444555567888888888877744333355554
No 123
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=41.62 E-value=9.9e+02 Score=31.73 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=9.8
Q ss_pred cCccchhHHHHHHHhhhc
Q 000281 720 LTPGTVKFAAFHVLSLEG 737 (1728)
Q Consensus 720 l~pgTvk~a~f~vls~~g 737 (1728)
|.-|=+..|+=.|-.+.|
T Consensus 534 l~~gdL~~A~~~~~~L~g 551 (582)
T PF09731_consen 534 LERGDLDKAARELNQLKG 551 (582)
T ss_pred HHCCCHHHHHHHHHhCch
Confidence 444456666655555555
No 124
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=40.63 E-value=3.1e+02 Score=35.37 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=10.1
Q ss_pred CCCCCCccccCCCCCCCC
Q 000281 518 LSVFPPKTVRLKRPFSVQ 535 (1728)
Q Consensus 518 Lp~fPP~~v~lkrP~ps~ 535 (1728)
+..+||.......|.+..
T Consensus 154 l~~~~~~~~~~~~~~~~~ 171 (445)
T PRK13428 154 LDAMAPSTADVDYPLLAK 171 (445)
T ss_pred hhccCCCchhhcCchhhh
Confidence 344555556666666544
No 125
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=40.44 E-value=25 Score=46.72 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=15.2
Q ss_pred CCCCCCCCCC--ChhhhhhhhhhHHHHHhhh
Q 000281 530 RPFSVQPWSD--SEENVGNLLMVWRFFITFA 558 (1728)
Q Consensus 530 rP~ps~Pl~v--p~e~vg~LL~VweFL~~F~ 558 (1728)
+++.-+|+.. ....--.+|++|-|=+...
T Consensus 269 k~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK 299 (988)
T KOG2038|consen 269 KYFSQRPLLELTNKRLRDKILLMWYFEHELK 299 (988)
T ss_pred HHHhhChhhhccccccccceehHHHHHHHHH
Confidence 3444444443 3333345888997754433
No 126
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=40.43 E-value=18 Score=45.01 Aligned_cols=45 Identities=22% Similarity=0.606 Sum_probs=33.7
Q ss_pred HHHHHhhhccccchhhhhccccccccccccccccccccCc-cCCCCCcccccc
Q 000281 1272 QWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSYLC-EDAHCPSCHRTF 1323 (1728)
Q Consensus 1272 ~~wmw~~~~~~~~l~a~k~Gkk~~~~~l~~C~~C~~~y~~-~e~hC~~CH~tf 1323 (1728)
..|+|..++- ..+.-...+.+..|..||...-. ++-+|+.||..-
T Consensus 200 ~~~lwe~~~p-------q~~~~~~~~~~~~C~~C~~~~~~~~~~~CpRC~~~L 245 (418)
T COG2995 200 RRWLWERFYP-------QTLATGAREGLRSCLCCHYILPHDAEPRCPRCGSKL 245 (418)
T ss_pred HHHHHHhhcc-------ccCCCCCcccceecccccccCCHhhCCCCCCCCChh
Confidence 3689997774 11224566778889999996666 899999999876
No 127
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.25 E-value=1.4e+03 Score=32.94 Aligned_cols=15 Identities=7% Similarity=0.313 Sum_probs=11.8
Q ss_pred cchhHHHHHHHHHhc
Q 000281 695 GSAAENAFAWMREKG 709 (1728)
Q Consensus 695 g~~~~~~~~~m~~~g 709 (1728)
-..|-+.++-+++++
T Consensus 651 ~e~aq~cI~fl~~~n 665 (1293)
T KOG0996|consen 651 IETAQECINFLKKNN 665 (1293)
T ss_pred HHHHHHHHHHHHHcC
Confidence 455677889999988
No 128
>smart00017 OSTEO Osteopontin. Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite [1,2,3]. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone
Probab=38.73 E-value=29 Score=40.34 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=18.3
Q ss_pred ccccccccCCcccccccCCccccCCCCCCCCCCCCcccCCC
Q 000281 1640 SAEAVDSDDNVQAVEYEQGNWEVGFNGATNGWNRDVMEVSD 1680 (1728)
Q Consensus 1640 ~~e~~~~d~n~q~~~yd~~~~~~~fng~~~~~~~~~~~~~d 1680 (1728)
+.-+|+-||+-|++ |-+++|- |-+-|++-|
T Consensus 44 ~vSSEEtdD~kQet----------lPsksne-Shd~~DD~d 73 (287)
T smart00017 44 AVSSEETDDFKQET----------LPSKSNE-SHEHTDDLD 73 (287)
T ss_pred cccccccccccccc----------CCCCCcc-Chhhccccc
Confidence 34445666778888 7777666 445454433
No 129
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.58 E-value=6.6e+02 Score=29.00 Aligned_cols=28 Identities=25% Similarity=0.170 Sum_probs=19.5
Q ss_pred HHHHhcchhhHHHHHHHHHHHhcCCCCc
Q 000281 472 MAKESMDLIEDEQLELMDLAAASKGLSS 499 (1728)
Q Consensus 472 ~ake~~e~~e~E~lel~kl~a~sk~l~s 499 (1728)
...+..+.+.++-++.+-+.+..+|..-
T Consensus 167 ~iersknfITReNLea~Ie~AL~~p~~y 194 (227)
T KOG4691|consen 167 LIERSKNFITRENLEARIEAALDSPKNY 194 (227)
T ss_pred HHHHHhhhhhHHhHHHHHHHHHcCcccc
Confidence 3345567788888888888877775543
No 130
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=37.15 E-value=1.1e+03 Score=31.16 Aligned_cols=10 Identities=20% Similarity=0.145 Sum_probs=3.9
Q ss_pred HHHHHHHhCC
Q 000281 172 IACVEAQLGE 181 (1728)
Q Consensus 172 i~~ve~qlge 181 (1728)
....+..+..
T Consensus 119 ~~~~e~~~~~ 128 (582)
T PF09731_consen 119 EEALEEAAKE 128 (582)
T ss_pred hhhhhhhhhh
Confidence 3334443333
No 131
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=36.68 E-value=8e+02 Score=29.29 Aligned_cols=7 Identities=14% Similarity=0.325 Sum_probs=2.9
Q ss_pred CCCCChh
Q 000281 536 PWSDSEE 542 (1728)
Q Consensus 536 Pl~vp~e 542 (1728)
+|++|++
T Consensus 183 a~~l~~~ 189 (250)
T PRK14474 183 SFELSQD 189 (250)
T ss_pred CCCCCHH
Confidence 3344444
No 132
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=36.62 E-value=9.4e+02 Score=30.02 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=5.8
Q ss_pred CccCCCCCCCCCC
Q 000281 188 PILGMEFDSLPPD 200 (1728)
Q Consensus 188 P~lg~efdplPP~ 200 (1728)
-|.|..--|+||+
T Consensus 249 Q~~Gqppppmpp~ 261 (498)
T KOG4849|consen 249 QINGQPPPPMPPA 261 (498)
T ss_pred CcCCCCCCCCCCC
Confidence 3444444445544
No 133
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.56 E-value=1.1e+02 Score=38.57 Aligned_cols=7 Identities=43% Similarity=0.624 Sum_probs=3.2
Q ss_pred ccccccc
Q 000281 222 KIYDRYD 228 (1728)
Q Consensus 222 k~y~~~~ 228 (1728)
+++.|+|
T Consensus 190 ~l~~RqD 196 (440)
T KOG2357|consen 190 KLVKRQD 196 (440)
T ss_pred hhhhhcc
Confidence 4444444
No 134
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.89 E-value=1.4e+02 Score=37.77 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=6.2
Q ss_pred eeccccchhhhh
Q 000281 77 QMWFCHRRLKDK 88 (1728)
Q Consensus 77 qVWFQNRRaK~K 88 (1728)
+-||+-.|+-..
T Consensus 136 ~~wF~s~~s~le 147 (440)
T KOG2357|consen 136 QAWFGSLRSLLE 147 (440)
T ss_pred HHHHHHHHHHHH
Confidence 456665554443
No 135
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=34.61 E-value=18 Score=41.53 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=27.0
Q ss_pred ccccccccccccccccCccCCCCCccccccc
Q 000281 1294 RCRQLLVICDVCLDSYLCEDAHCPSCHRTFG 1324 (1728)
Q Consensus 1294 ~~~~~l~~C~~C~~~y~~~e~hC~~CH~tf~ 1324 (1728)
+-+..--+|..|+-.+-+-..||+.||.-|.
T Consensus 255 rvv~~GfvCsVCLsvfc~p~~~C~~C~skF~ 285 (296)
T COG5242 255 RVVLLGFVCSVCLSVFCRPVPVCKKCKSKFS 285 (296)
T ss_pred cEEEEeeehhhhheeecCCcCcCcccccccc
Confidence 4455667899999999999999999999995
No 136
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=34.55 E-value=8.5e+02 Score=32.84 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=20.5
Q ss_pred hhhHhhcccccccCCCHHHHHHHHHHHHHHHhcchhHHHHHH
Q 000281 934 ESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLE 975 (1728)
Q Consensus 934 e~wl~~L~e~eY~dLsveeRL~aL~aLcdllLet~sIR~~LE 975 (1728)
.+||...-. +| |.+++. -+.-|+|+.+.-..+--..|+
T Consensus 598 rpwV~KKIi-Ef--lGeeE~-tLVdFI~s~i~~h~~~q~iL~ 635 (668)
T KOG2253|consen 598 RPWVNKKII-EF--LGEEED-TLVDFICSNIRQHSSPQQILD 635 (668)
T ss_pred HHHHHHHHH-HH--hCCcch-hHHHHHHHHHHhcCCHHHHHH
Confidence 367766544 22 344443 245677887776665444333
No 137
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=34.54 E-value=32 Score=45.71 Aligned_cols=43 Identities=21% Similarity=0.119 Sum_probs=21.9
Q ss_pred chhhhhccccccccccccccccccccCccCCCCCccccccccCCCcccccch
Q 000281 1284 SLCASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSCHRTFGAVDKSSKFSEH 1335 (1728)
Q Consensus 1284 ~l~a~k~Gkk~~~~~l~~C~~C~~~y~~~e~hC~~CH~tf~~~d~e~~~~~h 1335 (1728)
.|-|..+|++-.. .| +.-.++.+.+-+ |.-|-+-+.|-+...|
T Consensus 625 ~lEaH~NGfRy~s---~R-~~~vdiLfsNIK-----hafFqpc~~Emi~llH 667 (960)
T KOG1189|consen 625 SLEAHENGFRYQS---LR-DERVDILFSNIK-----HAFFQPCEGEMIILLH 667 (960)
T ss_pred ceeeecCceeeee---cc-ccchhhhhhhhh-----hhhcCccccceeeEee
Confidence 3556666665322 22 334455555544 5666555555555544
No 138
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=34.41 E-value=13 Score=31.10 Aligned_cols=26 Identities=27% Similarity=0.467 Sum_probs=17.1
Q ss_pred ccccccccccccccCccCCCCCcccc
Q 000281 1296 RQLLVICDVCLDSYLCEDAHCPSCHR 1321 (1728)
Q Consensus 1296 ~~~l~~C~~C~~~y~~~e~hC~~CH~ 1321 (1728)
.=.+.+|..|-..+|+-...|+.||.
T Consensus 8 ~l~~~rC~~Cg~~~~pPr~~Cp~C~s 33 (37)
T PF12172_consen 8 RLLGQRCRDCGRVQFPPRPVCPHCGS 33 (37)
T ss_dssp -EEEEE-TTT--EEES--SEETTTT-
T ss_pred EEEEEEcCCCCCEecCCCcCCCCcCc
Confidence 34578999999999999999999984
No 139
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=33.92 E-value=31 Score=47.40 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=8.2
Q ss_pred ccccCCCcc-hHHHHH
Q 000281 1349 DIHVSDSSL-PLGIRL 1363 (1728)
Q Consensus 1349 ~~~~~~~~l-p~~l~~ 1363 (1728)
+...|++-| |..+..
T Consensus 1378 dS~~PdHdLePPkFAk 1393 (3015)
T KOG0943|consen 1378 DSDMPDHDLEPPKFAK 1393 (3015)
T ss_pred cCCCCccCCCCchHHH
Confidence 555666655 555443
No 140
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=31.49 E-value=1.3e+03 Score=30.00 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=3.4
Q ss_pred hhhhHHHH
Q 000281 547 LLMVWRFF 554 (1728)
Q Consensus 547 LL~VweFL 554 (1728)
|+.|.+.|
T Consensus 206 l~~v~~~l 213 (445)
T PRK13428 206 LVSVAKLL 213 (445)
T ss_pred HHHHHHHH
Confidence 44444444
No 141
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=30.61 E-value=1.2e+02 Score=36.55 Aligned_cols=9 Identities=33% Similarity=0.431 Sum_probs=3.9
Q ss_pred HHHHHHHhc
Q 000281 701 AFAWMREKG 709 (1728)
Q Consensus 701 ~~~~m~~~g 709 (1728)
|-++|++||
T Consensus 215 A~~im~k~G 223 (378)
T KOG1996|consen 215 AHKIMQKYG 223 (378)
T ss_pred HHHHHHHhC
Confidence 334444444
No 142
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=29.72 E-value=1.5e+03 Score=30.66 Aligned_cols=29 Identities=10% Similarity=-0.066 Sum_probs=15.9
Q ss_pred CCCCCCCCcCCchhHHHHHHHHHHHHHhC
Q 000281 152 DMPIVRRSYESQQSIMELRAIACVEAQLG 180 (1728)
Q Consensus 152 ~~~~~~ryy~p~~~~~e~~ai~~ve~qlg 180 (1728)
.|++-.-||.+.........+..|.+--|
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g 65 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSG 65 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCC
Confidence 33444555666555555556666666555
No 143
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=29.41 E-value=29 Score=46.20 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=8.0
Q ss_pred cCCCCCCCCCCCCCCCC
Q 000281 190 LGMEFDSLPPDAFGAPI 206 (1728)
Q Consensus 190 lg~efdplPP~af~~pi 206 (1728)
+|-.-|-||-.....|+
T Consensus 106 ~~Q~~~~l~s~~ls~~q 122 (1194)
T KOG4246|consen 106 YGQKTDDLYSDKLSGYQ 122 (1194)
T ss_pred cCCcccccccccccCCC
Confidence 33334445555554444
No 144
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=29.16 E-value=1e+03 Score=28.16 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000281 380 QDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKREMERREKFLQKEYLRAEKRRLKEELRMEKQAAK 459 (1728)
Q Consensus 380 qe~errkeEer~rkE~Er~ere~kkeeEr~ererq~EEEr~~rE~~re~er~eke~ekEker~Ek~r~kEe~r~ekE~~r 459 (1728)
.+++..-...-..-+..+.+.+..+++-+..-...+.+.....++.+.+...+++.-.++.+.+..+..+..+.+-+.++
T Consensus 35 ~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~ 114 (246)
T TIGR03321 35 DAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQ 114 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 000281 460 RKVAIEKATA 469 (1728)
Q Consensus 460 ~k~~eEr~~~ 469 (1728)
+++..+-...
T Consensus 115 ~~a~~~l~~e 124 (246)
T TIGR03321 115 AALSDELRRR 124 (246)
T ss_pred HHHHHHHHHH
No 145
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=28.56 E-value=41 Score=48.17 Aligned_cols=15 Identities=53% Similarity=0.722 Sum_probs=6.9
Q ss_pred cccCCCccccCCCCC
Q 000281 1675 VMEVSDEDEDAFGDD 1689 (1728)
Q Consensus 1675 ~~~~~d~d~~~~~~~ 1689 (1728)
+|++.|||+|.++||
T Consensus 152 ~~d~~~~~~~~~~~~ 166 (2849)
T PTZ00415 152 VIDDDDEDEDEDDDD 166 (2849)
T ss_pred ccCCccccccccccc
Confidence 555555444443333
No 146
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=28.52 E-value=7e+02 Score=33.01 Aligned_cols=8 Identities=25% Similarity=0.277 Sum_probs=5.0
Q ss_pred CccHHHHH
Q 000281 646 PLTWHEIF 653 (1728)
Q Consensus 646 ~lTWpEIL 653 (1728)
-+-.||||
T Consensus 519 riRvPEIi 526 (645)
T KOG0681|consen 519 RIRVPEII 526 (645)
T ss_pred eeccceee
Confidence 45666666
No 147
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=28.19 E-value=43 Score=42.62 Aligned_cols=30 Identities=30% Similarity=0.545 Sum_probs=24.8
Q ss_pred cccccccccccccccCccCCCCCccccccc
Q 000281 1295 CRQLLVICDVCLDSYLCEDAHCPSCHRTFG 1324 (1728)
Q Consensus 1295 ~~~~l~~C~~C~~~y~~~e~hC~~CH~tf~ 1324 (1728)
-.+-+..|..|.-++-.+..||+.||.+-.
T Consensus 217 ~~~~l~~C~~Cd~l~~~~~a~CpRC~~~L~ 246 (419)
T PRK15103 217 LRQGLRSCSCCTAILPADQPVCPRCHTKGY 246 (419)
T ss_pred cccCCCcCCCCCCCCCCCCCCCCCCCCcCc
Confidence 345677899999998777889999999873
No 148
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=28.04 E-value=2.1e+03 Score=31.58 Aligned_cols=13 Identities=46% Similarity=0.554 Sum_probs=4.7
Q ss_pred CHHHHHHHHHHHH
Q 000281 949 SVEERLNALVALI 961 (1728)
Q Consensus 949 sveeRL~aL~aLc 961 (1728)
+.++=+++|.-|+
T Consensus 1068 P~e~~~~~l~~l~ 1080 (1201)
T PF12128_consen 1068 PSEEYVNALRELL 1080 (1201)
T ss_pred CCHHHHHHHHHHH
Confidence 3333333333333
No 149
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=27.53 E-value=31 Score=40.53 Aligned_cols=10 Identities=10% Similarity=0.255 Sum_probs=6.4
Q ss_pred CCCcchhhcc
Q 000281 1614 HRNLDEEEWG 1623 (1728)
Q Consensus 1614 ~r~~~~e~w~ 1623 (1728)
+=|...+-|+
T Consensus 178 ~yn~~~~~fn 187 (303)
T KOG3064|consen 178 IYNFRQHAFN 187 (303)
T ss_pred cccchHHHHH
Confidence 4466667775
No 150
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.99 E-value=1.1e+03 Score=31.79 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhCCCcc
Q 000281 168 ELRAIACVEAQLGEPLR 184 (1728)
Q Consensus 168 e~~ai~~ve~qlge~~r 184 (1728)
-|.||..+-+.+-+-|.
T Consensus 162 vh~av~~~~reIee~L~ 178 (652)
T COG2433 162 VHGAVKRVVREIEEKLD 178 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455554444444443
No 151
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=26.33 E-value=7e+02 Score=31.59 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=4.4
Q ss_pred ccCCCCCCCC
Q 000281 296 HIFSSPNGGE 305 (1728)
Q Consensus 296 ~~~psp~~~~ 305 (1728)
+++-+|++.+
T Consensus 224 PVmHsp~rk~ 233 (506)
T KOG2441|consen 224 PVMHSPSRKM 233 (506)
T ss_pred CcccCCCccc
Confidence 3444444443
No 152
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=26.26 E-value=47 Score=46.35 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=12.5
Q ss_pred HHHHHhhhhHHHH----HHhhh
Q 000281 1262 KAALERFQDFQWW----MWREC 1279 (1728)
Q Consensus 1262 ~~~~~r~~~f~~w----mw~~~ 1279 (1728)
+.+++++++--|| ||.+.
T Consensus 1064 ~~a~~~~k~i~kw~kk~~w~~~ 1085 (1640)
T KOG0262|consen 1064 KKASKYIKKILKWKKKHMWFEL 1085 (1640)
T ss_pred HHHHHHHHHHHHHHhhhccchh
Confidence 3566778888888 77743
No 153
>PF05071 NDUFA12: NADH ubiquinone oxidoreductase subunit NDUFA12; InterPro: IPR007763 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents the 17.2kDa subunit from NADH:ubiquinone oxidoreductase and its homologues []. This subunit is believed to be one of the 36 structural complex I proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0009055 electron carrier activity, 0016020 membrane
Probab=25.63 E-value=55 Score=33.89 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=23.4
Q ss_pred ccCCccCCCCceeecccCCCCCCCCCCceEEeccC
Q 000281 1118 LPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHD 1152 (1728)
Q Consensus 1118 ~pLGkDR~~nRYW~F~~s~s~~dp~~gri~VE~~d 1152 (1728)
.+.|.|-++|+||-+. .++.+..+-||+..+
T Consensus 2 ~lVG~D~~GN~YyE~~----~~~~~~~rRwV~y~~ 32 (105)
T PF05071_consen 2 TLVGTDEFGNKYYENP----RDEQGRRRRWVEYAG 32 (105)
T ss_pred CEeeEeCCCCEEEeec----CCCcCCCcEEEEcCC
Confidence 4689999999999997 234456677887643
No 154
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=25.60 E-value=1.1e+03 Score=27.33 Aligned_cols=90 Identities=10% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000281 380 QDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKREMERREKFLQKEYLRAEKRRLKEELRMEKQAAK 459 (1728)
Q Consensus 380 qe~errkeEer~rkE~Er~ere~kkeeEr~ererq~EEEr~~rE~~re~er~eke~ekEker~Ek~r~kEe~r~ekE~~r 459 (1728)
.+++..-...-..-+..+++-+...++-+..-+..+.+........+++..+.++.-.++.+.+..+..+..+.+-+.++
T Consensus 78 ~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek 157 (205)
T PRK06231 78 NKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKER 157 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 000281 460 RKVAIEKATA 469 (1728)
Q Consensus 460 ~k~~eEr~~~ 469 (1728)
+++..+-...
T Consensus 158 ~~a~~~Lk~e 167 (205)
T PRK06231 158 RELKEQLQKE 167 (205)
T ss_pred HHHHHHHHHH
No 155
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.28 E-value=5e+02 Score=32.06 Aligned_cols=6 Identities=17% Similarity=0.185 Sum_probs=2.5
Q ss_pred CCCHHH
Q 000281 565 PFTLDE 570 (1728)
Q Consensus 565 pfTLdd 570 (1728)
+|+++.
T Consensus 286 Gy~~~~ 291 (309)
T TIGR00570 286 GYTSNL 291 (309)
T ss_pred CcCHHH
Confidence 344433
No 156
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=24.85 E-value=46 Score=47.68 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=11.7
Q ss_pred CCCCCCcchhhcccccccccccccccccCccc
Q 000281 1611 SGLHRNLDEEEWGVGKERMINMEDAENSNSAE 1642 (1728)
Q Consensus 1611 ~~s~r~~~~e~w~~~~~~~~~~~~~~n~~~~e 1642 (1728)
+.-.|+|++|+ |---||-+..+
T Consensus 134 ~~~~r~l~eed----------~~~~~~~~~d~ 155 (2849)
T PTZ00415 134 RRRARHLAEED----------MSPRDNFVIDD 155 (2849)
T ss_pred hHHhhccchhh----------cCcccccccCC
Confidence 34456776443 44556655533
No 157
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=24.70 E-value=22 Score=29.70 Aligned_cols=25 Identities=24% Similarity=0.642 Sum_probs=17.9
Q ss_pred ccccccccccCccC---------CCCCccccccc
Q 000281 1300 VICDVCLDSYLCED---------AHCPSCHRTFG 1324 (1728)
Q Consensus 1300 ~~C~~C~~~y~~~e---------~hC~~CH~tf~ 1324 (1728)
..|+.|...|.-.+ -.|+.||.+|.
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWY 36 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEE
Confidence 56888888665542 47999988874
No 158
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=23.89 E-value=1.5e+03 Score=28.28 Aligned_cols=34 Identities=38% Similarity=0.393 Sum_probs=19.5
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHhcchhHHHHHH
Q 000281 940 LAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLE 975 (1728)
Q Consensus 940 L~e~eY~dLsveeRL~aL~aLcdllLet~sIR~~LE 975 (1728)
|.+...-+||+. |.-|.+-+.++.++.++-..++
T Consensus 487 l~sp~s~dLSP~--L~d~~AA~Qla~~gps~~q~l~ 520 (561)
T KOG1103|consen 487 LNSPASMDLSPD--LEDLEAAIQLANAGPSSNQALE 520 (561)
T ss_pred cCCCccCCCCcc--HHHHHHHHHHHhcCCchhHHHH
Confidence 444555566665 2345555666666666665555
No 159
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=23.70 E-value=2.6e+03 Score=31.17 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=24.8
Q ss_pred hhhhhhhccccchhhhhhccCCccHHHHHHHHHHHh
Q 000281 625 RIIEGAYAWGFDIRNWQQLLNPLTWHEIFRQLALSA 660 (1728)
Q Consensus 625 ~~~~~a~~wg~~~~~w~~~Ln~lTWpEILRq~lla~ 660 (1728)
.....+|.| -..|..+++.++|..|++....-.
T Consensus 487 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 519 (1353)
T TIGR02680 487 HREGARLAW---VDAWQAQLRELTILAVDDQPGALA 519 (1353)
T ss_pred HHHHHHHHH---hhhHHhhhccchhhhhcchhhhhh
Confidence 345556667 577888999999999988776644
No 160
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=22.33 E-value=1.8e+03 Score=28.72 Aligned_cols=157 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCccccCCCCcccccccCCCCCccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcHHHHHHHH
Q 000281 274 RVHGVQGHVARVRVLSQQDKPAHIFSSPNGGEDSLLQRESTSNNRKNAQSTSHPIFGTEDPYLLSDGQTFNNDAEQRMEK 353 (1728)
Q Consensus 274 ~g~~~~~~~~~~~~~s~~~~p~~~~psp~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ke~~r~Ek 353 (1728)
+|..+.+|-+....+|.--+| |-.-+---.....|..-.+-..-.-+--+.....|+..|++..+.-..-+-...-++-
T Consensus 432 pgsh~sSH~sssVssSp~~~p-hh~~~~~~~p~~~~~a~~p~d~l~~~n~~~al~gG~~gp~i~ada~SS~eTll~niq~ 510 (641)
T KOG3915|consen 432 PGSHASSHHSSSVSSSPVVPP-HHRGSVDETPLSTPTARDPLDKLSLTNHGQALPGGFPGPFIFADALSSIETLLTNIQG 510 (641)
T ss_pred cccccccccccccccCCccCc-hhcccccCCCCCCccccChhhhhccCCCCCcCCCCCCCcccccccchhHHHHHHHHHH
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000281 354 KRKC---DEARIAREVEANEIRIQKELERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKREMER 430 (1728)
Q Consensus 354 ~rk~---eeer~~ke~e~eeer~~kE~Erqe~errkeEer~rkE~Er~ere~kkeeEr~ererq~EEEr~~rE~~re~er 430 (1728)
--+. .....+++.+-+.+.++++.-| ||+-|+-.++.-..||+-+.--+++.+.++|...+
T Consensus 511 llkva~dnar~qekQiq~Ek~ELkmd~lr----------------erelreslekql~~ErklR~~~qkr~kkEkk~k~k 574 (641)
T KOG3915|consen 511 LLKVAIDNARAQEKQIQLEKTELKMDFLR----------------ERELRESLEKQLAMERKLRAIVQKRLKKEKKAKRK 574 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000281 431 REKFLQKEYLRAEKRRL 447 (1728)
Q Consensus 431 ~eke~ekEker~Ek~r~ 447 (1728)
.++..+-+-++.|+..+
T Consensus 575 ~qe~L~~~sk~reqaeq 591 (641)
T KOG3915|consen 575 LQEALEFESKRREQAEQ 591 (641)
T ss_pred HHHHhhhccccchhhhh
No 161
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.20 E-value=1.5e+03 Score=30.57 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=6.0
Q ss_pred cCCCCccCCCC
Q 000281 184 REDGPILGMEF 194 (1728)
Q Consensus 184 redgP~lg~ef 194 (1728)
+..|=|.+-+|
T Consensus 190 ~~~gGi~~a~F 200 (652)
T COG2433 190 ESYGGISRAEF 200 (652)
T ss_pred eccCccceeEE
Confidence 34566666555
No 162
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=21.98 E-value=1.1e+03 Score=26.23 Aligned_cols=90 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000281 380 QDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKREMERREKFLQKEYLRAEKRRLKEELRMEKQAAK 459 (1728)
Q Consensus 380 qe~errkeEer~rkE~Er~ere~kkeeEr~ererq~EEEr~~rE~~re~er~eke~ekEker~Ek~r~kEe~r~ekE~~r 459 (1728)
.+++..-...-..-+..+.+.+...++-+..-+..+.+.....+..+++-...++...++.+.+..+..+..+.+-+.++
T Consensus 48 ~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~ 127 (175)
T PRK14472 48 EEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEK 127 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 000281 460 RKVAIEKATA 469 (1728)
Q Consensus 460 ~k~~eEr~~~ 469 (1728)
+++..+-...
T Consensus 128 ~~a~~~l~~~ 137 (175)
T PRK14472 128 RRALDVLRNE 137 (175)
T ss_pred HHHHHHHHHH
No 163
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=21.77 E-value=94 Score=33.53 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=49.9
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHhhccccCCCCCCchhhHHHhhcccccchhccCCCcccccCCccCChhhHHHHHHHH
Q 000281 728 AAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRPAFRKDPADAEAILAAA 807 (1728)
Q Consensus 728 a~f~vls~~g~~gl~v~ela~~iqk~glrd~~ts~t~ea~i~~alsrd~~Lfer~apsty~~r~~~r~~p~~~~~~~~~~ 807 (1728)
.|+.+|... .+-++..+|...||+...-.-..-...-+-++.-|.=|. -|-.+-=++|.||.||-.+--+ |.|....
T Consensus 8 vAy~iL~~~-~~~m~f~dL~~ev~~~~~~s~e~~~~~iaq~YtdLn~DG-RFi~lG~n~WgLr~w~p~d~i~-e~~~~~~ 84 (129)
T PRK02363 8 VAYEILKEK-KEPMSFYDLVNEIQKYLGKSDEEIRERIAQFYTDLNLDG-RFISLGDNKWGLRSWYPVDEID-EEIIPLE 84 (129)
T ss_pred HHHHHHHHc-CCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhccC-CeeEcCCCceecccccChhhhh-hhhhcch
Confidence 356666655 567888888888886644211111122234455666677 7999999999999999887744 4555444
No 164
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=21.22 E-value=64 Score=42.12 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=21.5
Q ss_pred CHHHHHHHHHhcCcCCcchHHHHHHHHHHHH
Q 000281 1160 TVEAFDALLSSLDARGTRESHLRIMLQKIET 1190 (1728)
Q Consensus 1160 t~eeld~Ll~~Ld~rG~RE~~Lk~~L~k~~~ 1190 (1728)
--++|-.-|..-..+|-|=+.|-++|+..+.
T Consensus 592 ~~~qF~rsit~rS~~g~rms~~fk~I~dlKK 622 (1001)
T COG5406 592 RGEQFLRSITSRSIRGNRMSDLFKEINDLKK 622 (1001)
T ss_pred cchhhhhheeeeeccCccHHHHHHHHHHHHh
Confidence 3456666666677788888888888776544
No 165
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=20.75 E-value=94 Score=41.78 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=18.0
Q ss_pred hhchhHHHHHHhhhccCCCHHHHHHHHHHHHhhhhhhc
Q 000281 1383 SWTDERRKTWGMKLNMSSSAEEVLQLLTILESGIKRSY 1420 (1728)
Q Consensus 1383 ~W~~~~rk~W~~~l~~ass~~ellq~l~~le~~ik~d~ 1420 (1728)
+.+..|||+---+|+.||--.-+ |.+|=.++|.|-
T Consensus 535 yY~aLY~kLLdP~l~~sSKq~m~---LnLlykslK~D~ 569 (988)
T KOG2038|consen 535 YYRALYRKLLDPRLMNSSKQAMF---LNLLYKSLKEDI 569 (988)
T ss_pred HHHHHHHHhcCcccCchHHHHHH---HHHHHHHHHhhh
Confidence 44555566666666665544333 344444555543
No 166
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=20.75 E-value=3.4e+03 Score=31.34 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=13.9
Q ss_pred chHHHHHHHHhhccceeeccCCCCc
Q 000281 1452 KTTAAVALRLLELDASIMYVKPEKP 1476 (1728)
Q Consensus 1452 ~T~savaLrl~~LDa~I~y~~~~~~ 1476 (1728)
.++++|==||-.|-+.+.=....+.
T Consensus 1801 ~~i~~Learir~LE~~l~~E~~~~~ 1825 (1930)
T KOG0161|consen 1801 KQIAKLEARIRELESELEGEQRRKA 1825 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhH
Confidence 4556666666666665544444333
No 167
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=20.28 E-value=57 Score=34.37 Aligned_cols=24 Identities=29% Similarity=0.753 Sum_probs=22.4
Q ss_pred ccccccccCccCCCCCcccccccc
Q 000281 1302 CDVCLDSYLCEDAHCPSCHRTFGA 1325 (1728)
Q Consensus 1302 C~~C~~~y~~~e~hC~~CH~tf~~ 1325 (1728)
|+.|....-..+-||+.|+.+...
T Consensus 1 CPvCg~~l~vt~l~C~~C~t~i~G 24 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGTEIEG 24 (113)
T ss_pred CCCCCCceEEEEEEcCCCCCEEEe
Confidence 899999999999999999999964
No 168
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=20.08 E-value=2.7e+03 Score=29.84 Aligned_cols=8 Identities=38% Similarity=0.243 Sum_probs=4.4
Q ss_pred HHHHHHHH
Q 000281 649 WHEIFRQL 656 (1728)
Q Consensus 649 WpEILRq~ 656 (1728)
|=|+.|.|
T Consensus 762 ~~e~~~r~ 769 (982)
T PF03154_consen 762 PLEHFRRH 769 (982)
T ss_pred cchhhhcc
Confidence 44555555
Done!