Query 000283
Match_columns 1724
No_of_seqs 339 out of 1182
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 02:43:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 99.8 6.6E-19 1.4E-23 218.3 8.3 108 598-714 222-329 (640)
2 cd05496 Bromo_WDR9_II Bromodom 99.6 5.7E-15 1.2E-19 149.7 8.8 104 599-713 6-110 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.6 1.2E-14 2.5E-19 144.9 9.7 103 597-708 2-105 (108)
4 cd05506 Bromo_plant1 Bromodoma 99.5 1E-14 2.2E-19 142.0 7.5 99 599-706 1-99 (99)
5 cd05503 Bromo_BAZ2A_B_like Bro 99.5 2.1E-14 4.6E-19 140.2 7.9 96 600-706 2-97 (97)
6 cd05505 Bromo_WSTF_like Bromod 99.5 2.5E-14 5.4E-19 140.3 8.0 94 600-704 2-95 (97)
7 cd05497 Bromo_Brdt_I_like Brom 99.5 2.8E-14 6.1E-19 142.1 8.3 100 600-708 6-106 (107)
8 cd05498 Bromo_Brdt_II_like Bro 99.5 5.4E-14 1.2E-18 137.9 7.9 98 600-706 2-102 (102)
9 cd05504 Bromo_Acf1_like Bromod 99.5 7.2E-14 1.6E-18 140.7 8.8 102 599-711 13-114 (115)
10 cd05501 Bromo_SP100C_like Brom 99.5 1E-13 2.2E-18 137.6 9.1 97 600-710 4-100 (102)
11 cd05502 Bromo_tif1_like Bromod 99.5 1.5E-13 3.2E-18 136.8 9.9 100 599-710 5-107 (109)
12 cd05500 Bromo_BDF1_2_I Bromodo 99.5 1.3E-13 2.9E-18 135.9 9.2 98 598-704 4-101 (103)
13 cd05509 Bromo_gcn5_like Bromod 99.4 2.5E-13 5.5E-18 132.9 8.9 98 600-708 3-100 (101)
14 cd05507 Bromo_brd8_like Bromod 99.4 2.6E-13 5.6E-18 134.4 9.0 98 599-707 4-101 (104)
15 cd05499 Bromo_BDF1_2_II Bromod 99.4 2E-13 4.3E-18 134.2 8.1 98 600-706 2-102 (102)
16 cd05516 Bromo_SNF2L2 Bromodoma 99.4 5.8E-13 1.3E-17 132.6 9.1 99 599-708 2-106 (107)
17 cd05510 Bromo_SPT7_like Bromod 99.4 8.6E-13 1.9E-17 132.7 8.7 102 597-709 6-109 (112)
18 cd05508 Bromo_RACK7 Bromodomai 99.4 1.5E-12 3.3E-17 128.4 8.5 94 599-704 4-97 (99)
19 cd05513 Bromo_brd7_like Bromod 99.3 1.7E-12 3.7E-17 127.9 7.4 92 599-701 2-93 (98)
20 cd05528 Bromo_AAA Bromodomain; 99.3 3.2E-12 7E-17 128.5 8.0 99 601-710 6-108 (112)
21 cd05512 Bromo_brd1_like Bromod 99.3 5.3E-12 1.2E-16 124.2 7.2 89 601-700 4-92 (98)
22 cd05511 Bromo_TFIID Bromodomai 99.3 1.3E-11 2.9E-16 124.0 8.5 97 604-711 6-102 (112)
23 cd05515 Bromo_polybromo_V Brom 99.2 1.8E-11 3.8E-16 121.7 8.9 103 600-707 2-104 (105)
24 cd05519 Bromo_SNF2 Bromodomain 99.2 1.6E-11 3.4E-16 121.3 8.5 96 600-706 2-103 (103)
25 cd05524 Bromo_polybromo_I Brom 99.2 2.4E-11 5.2E-16 122.3 9.4 106 600-710 4-109 (113)
26 smart00297 BROMO bromo domain. 99.2 5E-11 1.1E-15 116.2 9.0 100 598-708 7-106 (107)
27 cd05529 Bromo_WDR9_I_like Brom 99.2 5.2E-11 1.1E-15 122.3 9.5 99 597-705 23-124 (128)
28 PF00439 Bromodomain: Bromodom 99.2 5.3E-11 1.2E-15 111.4 7.5 84 603-697 1-84 (84)
29 cd04369 Bromodomain Bromodomai 99.1 8.4E-11 1.8E-15 110.5 7.8 95 600-705 2-98 (99)
30 cd05525 Bromo_ASH1 Bromodomain 99.1 1.5E-10 3.2E-15 115.7 9.3 101 599-704 3-103 (106)
31 cd05518 Bromo_polybromo_IV Bro 99.1 1.6E-10 3.5E-15 114.9 8.4 99 601-704 3-101 (103)
32 cd05517 Bromo_polybromo_II Bro 99.1 1.6E-10 3.4E-15 114.8 7.6 99 601-704 3-101 (103)
33 cd05520 Bromo_polybromo_III Br 99.1 2.7E-10 5.8E-15 113.2 7.3 68 636-704 34-101 (103)
34 cd05492 Bromo_ZMYND11 Bromodom 99.0 8.5E-10 1.8E-14 111.1 6.7 83 613-701 16-98 (109)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.0 1.3E-09 2.8E-14 109.0 7.6 99 599-704 2-100 (106)
36 cd05522 Bromo_Rsc1_2_II Bromod 98.9 3.4E-09 7.5E-14 105.4 8.9 94 600-704 6-102 (104)
37 KOG1244 Predicted transcriptio 98.9 3.1E-10 6.8E-15 126.8 1.4 58 744-801 271-331 (336)
38 KOG1245 Chromatin remodeling c 98.7 1.2E-08 2.6E-13 135.8 6.1 94 603-708 1306-1399(1404)
39 KOG0825 PHD Zn-finger protein 98.6 8.5E-09 1.8E-13 126.6 1.8 51 752-802 216-267 (1134)
40 PF00628 PHD: PHD-finger; Int 98.4 1E-07 2.2E-12 82.8 1.3 48 753-800 1-50 (51)
41 KOG4299 PHD Zn-finger protein 98.3 1.7E-07 3.6E-12 115.0 1.6 53 751-803 253-307 (613)
42 COG5076 Transcription factor i 98.3 1E-06 2.2E-11 104.6 7.8 113 599-716 143-255 (371)
43 KOG1246 DNA-binding protein ju 98.3 2.5E-07 5.4E-12 120.5 1.2 166 752-921 156-331 (904)
44 KOG1512 PHD Zn-finger protein 98.2 4.6E-07 9.9E-12 102.5 1.2 58 742-801 302-363 (381)
45 cd05526 Bromo_polybromo_VI Bro 98.2 6.5E-06 1.4E-10 83.7 8.7 104 600-710 5-108 (110)
46 smart00249 PHD PHD zinc finger 98.1 2.7E-06 5.9E-11 70.6 3.5 46 753-798 1-47 (47)
47 cd04718 BAH_plant_2 BAH, or Br 98.0 2.4E-06 5.2E-11 90.4 2.9 31 775-805 1-31 (148)
48 PF02791 DDT: DDT domain; Int 97.9 2.9E-05 6.2E-10 71.1 6.4 58 255-357 2-59 (61)
49 cd05494 Bromodomain_1 Bromodom 97.8 1.1E-05 2.3E-10 82.3 2.7 79 600-686 5-89 (114)
50 KOG4443 Putative transcription 97.7 1.8E-05 3.9E-10 97.9 2.2 49 751-799 68-116 (694)
51 smart00571 DDT domain in diffe 97.6 8.9E-05 1.9E-09 68.5 6.0 37 254-291 1-39 (63)
52 KOG1245 Chromatin remodeling c 97.6 8.9E-06 1.9E-10 109.3 -0.7 52 752-803 1109-1160(1404)
53 KOG1973 Chromatin remodeling p 97.5 4.5E-05 9.7E-10 87.9 2.6 48 752-803 220-270 (274)
54 KOG0957 PHD finger protein [Ge 97.5 2.7E-05 5.9E-10 93.4 0.7 48 752-799 545-596 (707)
55 PF15614 WHIM3: WSTF, HB1, Itc 97.5 0.00012 2.6E-09 64.4 3.8 36 1205-1240 1-37 (46)
56 KOG1472 Histone acetyltransfer 97.3 0.00011 2.4E-09 93.1 3.3 84 604-698 612-695 (720)
57 KOG0383 Predicted helicase [Ge 97.2 0.00013 2.7E-09 92.7 1.5 49 752-803 48-96 (696)
58 cd05491 Bromo_TBP7_like Bromod 97.1 0.0004 8.7E-09 71.7 3.6 40 647-687 63-102 (119)
59 KOG0955 PHD finger protein BR1 96.9 0.00046 1E-08 90.7 3.1 53 750-804 218-272 (1051)
60 smart00542 FYRC "FY-rich" doma 96.9 0.0011 2.4E-08 64.8 4.6 73 60-191 11-83 (86)
61 PF05965 FYRC: F/Y rich C-term 96.8 0.00064 1.4E-08 65.8 2.4 73 56-187 11-83 (86)
62 KOG0954 PHD finger protein [Ge 96.7 0.00099 2.1E-08 83.7 3.7 51 750-802 270-322 (893)
63 COG5034 TNG2 Chromatin remodel 96.7 0.00074 1.6E-08 76.8 1.6 44 753-800 223-269 (271)
64 KOG4323 Polycomb-like PHD Zn-f 96.2 0.0018 3.9E-08 79.2 1.6 52 753-804 170-227 (464)
65 COG5141 PHD zinc finger-contai 96.2 0.0021 4.6E-08 77.8 1.7 51 750-802 192-244 (669)
66 PF15613 WHIM2: WSTF, HB1, Itc 95.9 0.0061 1.3E-07 52.1 2.9 17 1141-1157 1-17 (38)
67 KOG0956 PHD finger protein AF1 95.8 0.0039 8.4E-08 78.0 1.7 49 753-803 7-59 (900)
68 PF15612 WHIM1: WSTF, HB1, Itc 95.8 0.0085 1.8E-07 52.7 3.3 44 838-881 5-48 (50)
69 KOG0955 PHD finger protein BR1 95.6 0.013 2.8E-07 77.8 5.5 100 599-709 566-665 (1051)
70 KOG1473 Nucleosome remodeling 95.6 0.0083 1.8E-07 78.4 3.4 49 751-802 344-392 (1414)
71 KOG1473 Nucleosome remodeling 95.2 0.039 8.4E-07 72.6 7.6 109 242-415 174-285 (1414)
72 KOG1474 Transcription initiati 93.8 0.019 4.1E-07 73.6 0.3 84 611-703 5-88 (640)
73 PF13831 PHD_2: PHD-finger; PD 93.5 0.015 3.3E-07 48.9 -0.7 34 764-799 2-36 (36)
74 KOG0008 Transcription initiati 93.1 0.095 2.1E-06 70.3 4.8 94 604-708 1267-1361(1563)
75 KOG0008 Transcription initiati 91.8 0.15 3.3E-06 68.5 4.3 73 606-689 1390-1462(1563)
76 KOG1472 Histone acetyltransfer 89.6 0.43 9.3E-06 61.9 5.4 75 597-689 292-366 (720)
77 KOG1827 Chromatin remodeling c 87.8 0.61 1.3E-05 59.8 5.0 103 600-707 54-156 (629)
78 KOG0957 PHD finger protein [Ge 82.6 0.89 1.9E-05 56.4 2.9 52 752-803 120-181 (707)
79 KOG0386 Chromatin remodeling c 74.6 4.2 9.1E-05 54.6 5.5 106 601-711 1027-1132(1157)
80 PF15446 zf-PHD-like: PHD/FYVE 73.1 1.7 3.8E-05 48.0 1.4 51 753-803 1-62 (175)
81 KOG1828 IRF-2-binding protein 69.1 1.9 4.1E-05 52.6 0.7 100 604-714 25-124 (418)
82 PF14446 Prok-RING_1: Prokaryo 69.0 2.6 5.6E-05 39.1 1.3 32 752-783 6-38 (54)
83 PF13901 DUF4206: Domain of un 67.6 4.3 9.3E-05 45.8 3.0 41 752-801 153-198 (202)
84 KOG4443 Putative transcription 65.5 2 4.3E-05 55.2 -0.1 50 751-800 18-70 (694)
85 KOG1512 PHD Zn-finger protein 63.5 3.2 7E-05 48.9 1.1 54 752-805 259-322 (381)
86 PF12171 zf-C2H2_jaz: Zinc-fin 54.5 5.4 0.00012 31.3 0.7 24 1328-1351 1-24 (27)
87 PF11793 FANCL_C: FANCL C-term 52.5 1.9 4.2E-05 41.1 -2.5 50 752-801 3-64 (70)
88 KOG1828 IRF-2-binding protein 51.8 10 0.00022 46.7 2.6 61 638-700 238-298 (418)
89 PF12874 zf-met: Zinc-finger o 49.3 4 8.6E-05 31.0 -0.8 23 1329-1351 1-23 (25)
90 KOG0383 Predicted helicase [Ge 45.9 3.7 7.9E-05 53.8 -2.3 49 750-801 505-554 (696)
91 KOG4299 PHD Zn-finger protein 42.3 15 0.00033 47.5 2.2 48 752-802 48-96 (613)
92 PF12861 zf-Apc11: Anaphase-pr 39.0 13 0.00028 37.4 0.8 46 754-801 35-80 (85)
93 KOG4628 Predicted E3 ubiquitin 37.0 29 0.00063 42.7 3.3 53 752-807 230-282 (348)
94 KOG1734 Predicted RING-contain 36.0 12 0.00027 44.2 0.1 61 740-802 213-280 (328)
95 cd05493 Bromo_ALL-1 Bromodomai 33.6 51 0.0011 35.7 4.1 44 648-692 59-102 (131)
96 PF04216 FdhE: Protein involve 31.5 22 0.00048 42.0 1.2 47 745-803 166-222 (290)
97 PF13832 zf-HC5HC2H_2: PHD-zin 30.8 27 0.00058 35.3 1.5 29 752-782 56-86 (110)
98 PF13639 zf-RING_2: Ring finge 30.8 3.9 8.6E-05 35.1 -3.7 42 753-799 2-44 (44)
99 PF07227 DUF1423: Protein of u 29.9 43 0.00094 42.3 3.3 49 753-801 130-192 (446)
100 PRK03564 formate dehydrogenase 28.6 44 0.00096 40.6 3.0 41 748-800 184-234 (309)
101 TIGR01562 FdhE formate dehydro 28.4 53 0.0012 39.8 3.6 42 748-801 181-233 (305)
102 PF00301 Rubredoxin: Rubredoxi 28.4 31 0.00067 31.4 1.3 18 784-802 27-44 (47)
103 PF10497 zf-4CXXC_R1: Zinc-fin 26.5 28 0.0006 36.1 0.8 48 752-800 8-69 (105)
104 PF10367 Vps39_2: Vacuolar sor 23.5 1.7E+02 0.0038 28.8 5.6 31 751-782 78-108 (109)
105 PF07649 C1_3: C1-like domain; 21.6 39 0.00085 27.4 0.6 28 753-780 2-29 (30)
106 PF00096 zf-C2H2: Zinc finger, 21.2 25 0.00055 26.1 -0.5 20 1330-1349 2-21 (23)
107 KOG2756 Predicted Mg2+-depende 21.0 22 0.00048 42.4 -1.3 39 138-178 206-244 (349)
108 cd02341 ZZ_ZZZ3 Zinc finger, Z 20.7 38 0.00083 30.8 0.4 21 1316-1336 1-23 (48)
109 COG1773 Rubredoxin [Energy pro 20.1 68 0.0015 30.3 1.8 41 752-801 4-45 (55)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.76 E-value=6.6e-19 Score=218.27 Aligned_cols=108 Identities=27% Similarity=0.408 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHH
Q 000283 598 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 677 (1724)
Q Consensus 598 ~ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLV 677 (1724)
.+|++|..||++|+.+.++|+|++|||...|+|+| |+.||++|||||||+.||..|.|. +++.|++|||+|
T Consensus 222 ~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpD--------Y~~IIK~PMDLgTIK~kL~~~~Y~-~~~eF~~DVRL~ 292 (640)
T KOG1474|consen 222 ELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPD--------YHDIIKHPMDLGTIKKKLEKGEYK-SAEEFAADVRLT 292 (640)
T ss_pred HHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcc--------hhhhcCCCccHHHHHhhhcccccC-CHHHHHHHHHHH
Confidence 46999999999999999999999999987776665 999999999999999999999999 666799999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhhhhHHHHHHhhhhhh
Q 000283 678 WHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLTLV 714 (1724)
Q Consensus 678 WsN~~tyN~dgSEVv~LAekLSqiFEsrYkKqVL~~v 714 (1724)
|+||++||+.+++|+.||..|+..|+++|+.+.+.+.
T Consensus 293 F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~ 329 (640)
T KOG1474|consen 293 FDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIE 329 (640)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999998776543
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.56 E-value=5.7e-15 Score=149.74 Aligned_cols=104 Identities=19% Similarity=0.302 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHH
Q 000283 599 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 678 (1724)
Q Consensus 599 ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVW 678 (1724)
..++|..||..++.++.+++|..||+. .++++|+.+|++||||+||+.|+..|.|. +++.|..||++||
T Consensus 6 w~~~c~~il~~l~~~~~s~~F~~PVd~----------~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~-~~~ef~~D~~lif 74 (119)
T cd05496 6 WKKQCKELVNLMWDCEDSEPFRQPVDL----------LKYPDYRDIIDTPMDLGTVKETLFGGNYD-DPMEFAKDVRLIF 74 (119)
T ss_pred HHHHHHHHHHHHHhCCccccccCCCCh----------hhcCcHHHHhCCcccHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Confidence 478999999999999999999999986 24788999999999999999999999999 6777999999999
Q ss_pred HhhhhhcCC-CchHHHHHHHhhhhhHHHHHHhhhhh
Q 000283 679 HHICTAYSD-QSDLLQLAGKLCQNFEVLYKKEVLTL 713 (1724)
Q Consensus 679 sN~~tyN~d-gSEVv~LAekLSqiFEsrYkKqVL~~ 713 (1724)
.||..||++ ++.|+.+|..|...|+..+.+.+..+
T Consensus 75 ~Na~~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 75 SNSKSYTPNKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999985 89999999999999999999988765
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.55 E-value=1.2e-14 Score=144.90 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHHhc-chhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHH
Q 000283 597 DVIMKQCRKVLRCAAAA-DEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 675 (1724)
Q Consensus 597 d~ImKrCr~VL~~Ll~s-~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVR 675 (1724)
+.+.++|..++..++.+ +.+++|..||++.. .++++|+.+|++||||+||+.|+..|.|. +...|..|++
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~--------~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~-s~~ef~~D~~ 72 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKL--------LGIPDYFDIVKNPMDLSTIRRKLDTGQYQ-DPWQYVDDVW 72 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccc--------cCCCcHHHHhCCCCCHHHHHHHHhcCCCC-CHHHHHHHHH
Confidence 56789999999999998 99999999998733 46778999999999999999999999999 6777999999
Q ss_pred HHHHhhhhhcCCCchHHHHHHHhhhhhHHHHHH
Q 000283 676 EVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 708 (1724)
Q Consensus 676 LVWsN~~tyN~dgSEVv~LAekLSqiFEsrYkK 708 (1724)
++|.||..||+.++.|..+|..|...|+..+..
T Consensus 73 li~~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~ 105 (108)
T cd05495 73 LMFDNAWLYNRKTSRVYKYCTKLAEVFEQEIDP 105 (108)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987764
No 4
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.54 E-value=1e-14 Score=142.01 Aligned_cols=99 Identities=27% Similarity=0.407 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHH
Q 000283 599 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 678 (1724)
Q Consensus 599 ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVW 678 (1724)
+|++|+.||..|+.++.+++|..||+. ...++++|..+|.+||||+||+.|+..+.|. +.+.|.+|++++|
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~--------~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~-s~~ef~~D~~li~ 71 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDV--------VALGLPDYFDIIKKPMDLGTVKKKLEKGEYS-SPEEFAADVRLTF 71 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCc--------cccCCCCHHHHHcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Confidence 489999999999999999999999965 3356788999999999999999999999999 6777999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHHHH
Q 000283 679 HHICTAYSDQSDLLQLAGKLCQNFEVLY 706 (1724)
Q Consensus 679 sN~~tyN~dgSEVv~LAekLSqiFEsrY 706 (1724)
.||..||+.++.+..+|..|.+.|+.+|
T Consensus 72 ~Na~~yn~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 72 ANAMRYNPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999764
No 5
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.52 E-value=2.1e-14 Score=140.19 Aligned_cols=96 Identities=26% Similarity=0.442 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHH
Q 000283 600 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 679 (1724)
Q Consensus 600 mKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWs 679 (1724)
|..|+.||..|..++.+++|..||+. ..+++|..+|++||||+||+.|+..|.|. +++.|.+|+++||.
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~----------~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~li~~ 70 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNT----------KLVPGYRKIIKKPMDFSTIREKLESGQYK-TLEEFAEDVRLVFD 70 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCc----------cccCCHHHHhCCCCCHHHHHHHHccCCCC-CHHHHHHHHHHHHH
Confidence 57899999999999999999999975 24678999999999999999999999998 77889999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhhhhHHHH
Q 000283 680 HICTAYSDQSDLLQLAGKLCQNFEVLY 706 (1724)
Q Consensus 680 N~~tyN~dgSEVv~LAekLSqiFEsrY 706 (1724)
||..||++++.+..+|..|.+.|+.+|
T Consensus 71 Na~~yN~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 71 NCETFNEDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998764
No 6
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.51 E-value=2.5e-14 Score=140.29 Aligned_cols=94 Identities=19% Similarity=0.334 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHH
Q 000283 600 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 679 (1724)
Q Consensus 600 mKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWs 679 (1724)
++.|..||..++.++.+++|..||+. .++++|+.+|++||||+||+.|+..|.|. +.+.|.+|++++|.
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~----------~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~D~~li~~ 70 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTA----------DEAEDYKKVITNPMDLQTMQTKCSCGSYS-SVQEFLDDMKLVFS 70 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCCh----------hhcccHHHHcCCcCCHHHHHHHHcCCCCC-CHHHHHHHHHHHHH
Confidence 57899999999999999999999975 34788999999999999999999999999 67789999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhhhhHH
Q 000283 680 HICTAYSDQSDLLQLAGKLCQNFEV 704 (1724)
Q Consensus 680 N~~tyN~dgSEVv~LAekLSqiFEs 704 (1724)
||..||++++.|...|.+|.+.|..
T Consensus 71 Na~~yN~~~s~i~~~a~~le~~f~~ 95 (97)
T cd05505 71 NAEKYYENGSYVLSCMRKTEQCCVN 95 (97)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999888865
No 7
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.51 E-value=2.8e-14 Score=142.08 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=89.8
Q ss_pred HHHH-HHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHH
Q 000283 600 MKQC-RKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 678 (1724)
Q Consensus 600 mKrC-r~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVW 678 (1724)
++.| ..||..+..++.+++|..||+. ...|+++|..+|++||||+||+.|+..+.|. +...|.+|+++||
T Consensus 6 ~~~~~~~il~~l~~~~~s~~F~~PVd~--------~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~-s~~ef~~D~~li~ 76 (107)
T cd05497 6 LQYLLKVVLKALWKHKFAWPFQQPVDA--------VKLNLPDYHKIIKTPMDLGTIKKRLENNYYW-SASECIQDFNTMF 76 (107)
T ss_pred HHHHHHHHHHHHHhCCcCccccCCCCc--------ccccCCcHHHHHcCcccHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Confidence 4555 5779999999999999999976 3346788999999999999999999999999 6777999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHHHHHH
Q 000283 679 HHICTAYSDQSDLLQLAGKLCQNFEVLYKK 708 (1724)
Q Consensus 679 sN~~tyN~dgSEVv~LAekLSqiFEsrYkK 708 (1724)
.||..||++++.|..+|..|.+.|+....+
T Consensus 77 ~Na~~yN~~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 77 TNCYIYNKPGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999877654
No 8
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.48 E-value=5.4e-14 Score=137.85 Aligned_cols=98 Identities=21% Similarity=0.352 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhc---chhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHH
Q 000283 600 MKQCRKVLRCAAAA---DEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 676 (1724)
Q Consensus 600 mKrCr~VL~~Ll~s---~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRL 676 (1724)
+++|..||+.|+.+ +.+++|..||++ ...++++|..+|.+||||++|+.|+..|.|. +.+.|..|+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~--------~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~-s~~ef~~D~~l 72 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDP--------EALGLHDYHDIIKHPMDLSTIKKKLDNREYA-DAQEFAADVRL 72 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCc--------cccCCCcHHHHccCCCcHHHHHHHHccCCCC-CHHHHHHHHHH
Confidence 58999999999988 889999999876 3456788999999999999999999999999 77889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhhhhHHHH
Q 000283 677 VWHHICTAYSDQSDLLQLAGKLCQNFEVLY 706 (1724)
Q Consensus 677 VWsN~~tyN~dgSEVv~LAekLSqiFEsrY 706 (1724)
+|+||..||+.++.+..+|..|.+.|+.+|
T Consensus 73 i~~Na~~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 73 MFSNCYKYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999764
No 9
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.48 E-value=7.2e-14 Score=140.73 Aligned_cols=102 Identities=18% Similarity=0.293 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHH
Q 000283 599 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 678 (1724)
Q Consensus 599 ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVW 678 (1724)
.+..|..||..++..+.+++|..||+. .++++|+.+|++||||+||..|+..|.|. +.+.|.+|+++||
T Consensus 13 ~~~~c~~il~~l~~~~~s~~F~~pvd~----------~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~-s~~~f~~Dv~LI~ 81 (115)
T cd05504 13 NLSALEQLLVEIVKHKDSWPFLRPVSK----------IEVPDYYDIIKKPMDLGTIKEKLNMGEYK-LAEEFLSDIQLVF 81 (115)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCc----------cccccHHHHhcCcccHHHHHHHHccCCCC-CHHHHHHHHHHHH
Confidence 479999999999999999999999975 35788999999999999999999999999 6777999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHHHHHHhhh
Q 000283 679 HHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVL 711 (1724)
Q Consensus 679 sN~~tyN~dgSEVv~LAekLSqiFEsrYkKqVL 711 (1724)
.||..||+.++.+..+|..|.+.|+..+++..+
T Consensus 82 ~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~~~~ 114 (115)
T cd05504 82 SNCFLYNPEHTSVYKAGTRLQRFFIKRCRKLGL 114 (115)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999987643
No 10
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.48 E-value=1e-13 Score=137.60 Aligned_cols=97 Identities=21% Similarity=0.304 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHH
Q 000283 600 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 679 (1724)
Q Consensus 600 mKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWs 679 (1724)
+++|..||.+|.+++.+++|..+ + .++++|+.+|++||||+||+.|+..|.|. +.+.|.+||++||.
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~--p----------~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~-s~~ef~~D~~Lif~ 70 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISK--P----------YYIRDYCQGIKEPMWLNKVKERLNERVYH-TVEGFVRDMRLIFH 70 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCC--C----------CCCCchHHHcCCCCCHHHHHHHHcCCCCC-CHHHHHHHHHHHHH
Confidence 57899999999999999999542 1 26788999999999999999999999999 77889999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhhhhHHHHHHhh
Q 000283 680 HICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 710 (1724)
Q Consensus 680 N~~tyN~dgSEVv~LAekLSqiFEsrYkKqV 710 (1724)
||..||+++ .+..+|..|+..|+..|.+.+
T Consensus 71 N~~~yN~~~-~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 71 NHKLFYKDD-DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred HHHHHcCCC-HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999888653
No 11
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.47 E-value=1.5e-13 Score=136.80 Aligned_cols=100 Identities=20% Similarity=0.301 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcc---cccCCChhhhHhhHH
Q 000283 599 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAF---GAYGGSHEAFLEDVR 675 (1724)
Q Consensus 599 ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaa---G~Y~gs~E~FAeDVR 675 (1724)
-.++|..||..++.++.+++|..||+. ++++|+.+|++||||+||+.|+.. |.|. +.+.|..|++
T Consensus 5 ~~~~c~~il~~l~~~~~s~~F~~pv~~-----------~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~-s~~~f~~D~~ 72 (109)
T cd05502 5 DQRKCERLLLELYCHELSLPFHEPVSP-----------SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYS-SPEEFVADVR 72 (109)
T ss_pred HHHHHHHHHHHHHhCCCChhhcCCCCC-----------CCCCHHHHCCCCccHHHHHHHHhcCCCCCCC-CHHHHHHHHH
Confidence 379999999999999999999999965 367799999999999999999998 5888 7888999999
Q ss_pred HHHHhhhhhcCCCchHHHHHHHhhhhhHHHHHHhh
Q 000283 676 EVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 710 (1724)
Q Consensus 676 LVWsN~~tyN~dgSEVv~LAekLSqiFEsrYkKqV 710 (1724)
++|+||..||++++.+..+|..|...|+..+.+++
T Consensus 73 li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 73 LMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999988764
No 12
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.47 E-value=1.3e-13 Score=135.88 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHH
Q 000283 598 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 677 (1724)
Q Consensus 598 ~ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLV 677 (1724)
.-.++|..+++.+..++.+++|..||++ ...++++|+.+|.+||||++|+.|+..|.|. +...|..|++++
T Consensus 4 ~~~~~~~~ii~~l~~~~~a~~F~~pv~~--------~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~-s~~~f~~D~~li 74 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKDARPFLVPVDP--------VKLNIPHYPTIIKKPMDLGTIERKLKSNVYT-SVEEFTADFNLM 74 (103)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCCCc--------ccccCCCHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHH
Confidence 3479999999999999999999999975 4467888999999999999999999999998 677799999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhhhhHH
Q 000283 678 WHHICTAYSDQSDLLQLAGKLCQNFEV 704 (1724)
Q Consensus 678 WsN~~tyN~dgSEVv~LAekLSqiFEs 704 (1724)
|+||..||+.++.+..+|..|.+.|+.
T Consensus 75 ~~Na~~yN~~~s~~~~~A~~l~~~fe~ 101 (103)
T cd05500 75 VDNCLTFNGPEHPVSQMGKRLQAAFEK 101 (103)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999886
No 13
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.44 E-value=2.5e-13 Score=132.91 Aligned_cols=98 Identities=19% Similarity=0.303 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHH
Q 000283 600 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 679 (1724)
Q Consensus 600 mKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWs 679 (1724)
.++|+.|+..++.++.+++|..||+.. .+++|..+|++||||+||..|+..|.|. +.+.|..||+++|.
T Consensus 3 ~~~~~~il~~l~~~~~a~~F~~pv~~~----------~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~-s~~~f~~Dv~li~~ 71 (101)
T cd05509 3 YTQLKKVLDSLKNHKSAWPFLEPVDKE----------EAPDYYDVIKKPMDLSTMEEKLENGYYV-TLEEFVADLKLIFD 71 (101)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChh----------hcCCHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHH
Confidence 589999999999999999999999762 3778999999999999999999999999 77889999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhhhhHHHHHH
Q 000283 680 HICTAYSDQSDLLQLAGKLCQNFEVLYKK 708 (1724)
Q Consensus 680 N~~tyN~dgSEVv~LAekLSqiFEsrYkK 708 (1724)
||..||+.++.+..+|..|.+.|+..+++
T Consensus 72 Na~~yN~~~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 72 NCRLYNGPDTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999987664
No 14
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.44 E-value=2.6e-13 Score=134.35 Aligned_cols=98 Identities=21% Similarity=0.250 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHH
Q 000283 599 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 678 (1724)
Q Consensus 599 ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVW 678 (1724)
.-+.|..|++.+..++.+++|..||+. .+.++|+.+|++||||+||+.|+..|.|. +.+.|..|++++|
T Consensus 4 ~~~~~~~il~~l~~~~~a~~F~~pV~~----------~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~D~~li~ 72 (104)
T cd05507 4 WKKAILLVYRTLASHRYASVFLKPVTE----------DIAPGYHSVVYRPMDLSTIKKNIENGTIR-STAEFQRDVLLMF 72 (104)
T ss_pred HHHHHHHHHHHHHcCCCCHhhcCCCCc----------cccCCHHHHhCCCcCHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Confidence 468999999999999999999999975 36788999999999999999999999999 7788999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHHHHH
Q 000283 679 HHICTAYSDQSDLLQLAGKLCQNFEVLYK 707 (1724)
Q Consensus 679 sN~~tyN~dgSEVv~LAekLSqiFEsrYk 707 (1724)
+||..||++++.|..+|..|...+.....
T Consensus 73 ~Na~~yN~~~s~v~~~A~~l~~~~~~~~~ 101 (104)
T cd05507 73 QNAIMYNSSDHDVYLMAVEMQREVMSQIQ 101 (104)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999887665443
No 15
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.44 E-value=2e-13 Score=134.16 Aligned_cols=98 Identities=21% Similarity=0.385 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHh---cchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHH
Q 000283 600 MKQCRKVLRCAAA---ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 676 (1724)
Q Consensus 600 mKrCr~VL~~Ll~---s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRL 676 (1724)
++.|..||..|+. .+.+++|..||+.. ..++++|..+|++||||++|..|+..+.|. +.+.|..|+++
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~--------~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~-s~~ef~~D~~l 72 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPV--------ALNIPNYFSIIKKPMDLGTISKKLQNGQYQ-SAKEFERDVRL 72 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCcc--------ccCCCCHHHHhcCCCCHHHHHHHHcCCCCC-CHHHHHHHHHH
Confidence 5899999999997 45689999999763 335778999999999999999999999999 67779999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhhhhHHHH
Q 000283 677 VWHHICTAYSDQSDLLQLAGKLCQNFEVLY 706 (1724)
Q Consensus 677 VWsN~~tyN~dgSEVv~LAekLSqiFEsrY 706 (1724)
+|.||..||++++.+..+|..|.+.|+..|
T Consensus 73 i~~N~~~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 73 IFKNCYTFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998753
No 16
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.41 E-value=5.8e-13 Score=132.58 Aligned_cols=99 Identities=22% Similarity=0.289 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhcch------hhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHh
Q 000283 599 IMKQCRKVLRCAAAADE------ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLE 672 (1724)
Q Consensus 599 ImKrCr~VL~~Ll~s~~------s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAe 672 (1724)
+.++|+.||+.++.... +++|.+|++. .++++|+.+|++||||+||+.|+..|.|. +...|..
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~----------~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~-s~~ef~~ 70 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSR----------KELPEYYELIRKPVDFKKIKERIRNHKYR-SLEDLEK 70 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCc----------ccCCCHHHHcCCCCCHHHHHHHHccCCCC-CHHHHHH
Confidence 46899999999997666 5677766543 46889999999999999999999999999 6777999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhhhhHHHHHH
Q 000283 673 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 708 (1724)
Q Consensus 673 DVRLVWsN~~tyN~dgSEVv~LAekLSqiFEsrYkK 708 (1724)
|++++|.||..||+.++.|+.+|..|...|+..+++
T Consensus 71 D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 71 DVMLLCQNAQTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988875
No 17
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.38 E-value=8.6e-13 Score=132.69 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHhc-chhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHH
Q 000283 597 DVIMKQCRKVLRCAAAA-DEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 675 (1724)
Q Consensus 597 d~ImKrCr~VL~~Ll~s-~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVR 675 (1724)
+.+.++|+.||+.+..+ +.+++|..||++ .++++|+.+|++||||+||+.|+..|.|. +.+.|.+|++
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~ 74 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSK----------REAPDYYDIIKKPMDLGTMLKKLKNLQYK-SKAEFVDDLN 74 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCCh----------hhcCCHHHHhcCccCHHHHHHHHhCCCCC-CHHHHHHHHH
Confidence 34689999999999998 899999999976 25788999999999999999999999999 6888999999
Q ss_pred HHHHhhhhhcCCCc-hHHHHHHHhhhhhHHHHHHh
Q 000283 676 EVWHHICTAYSDQS-DLLQLAGKLCQNFEVLYKKE 709 (1724)
Q Consensus 676 LVWsN~~tyN~dgS-EVv~LAekLSqiFEsrYkKq 709 (1724)
++|.||..||++++ .+..+|..|.+.|+......
T Consensus 75 Li~~N~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 75 LIWKNCLLYNSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999765 57789999999888766644
No 18
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.36 E-value=1.5e-12 Score=128.43 Aligned_cols=94 Identities=22% Similarity=0.301 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHH
Q 000283 599 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 678 (1724)
Q Consensus 599 ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVW 678 (1724)
+-...+.++..|. ++.+++|..||+. ..+++|+.+|++||||+||+.|+..|.|. +.+.|.+|++++|
T Consensus 4 l~~~L~~~~~~~~-~~~s~~F~~PV~~----------~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~Dv~LI~ 71 (99)
T cd05508 4 LSKLLKFALERMK-QPGAEPFLKPVDL----------EQFPDYAQYVFKPMDLSTLEKNVRKKAYG-STDAFLADAKWIL 71 (99)
T ss_pred HHHHHHHHHHHHh-CcCcchhcCCCCh----------hhCCCHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Confidence 3456677888888 8999999999976 24778999999999999999999999999 7888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHH
Q 000283 679 HHICTAYSDQSDLLQLAGKLCQNFEV 704 (1724)
Q Consensus 679 sN~~tyN~dgSEVv~LAekLSqiFEs 704 (1724)
.||..||++++.+..+|..|...++.
T Consensus 72 ~Na~~YN~~~s~i~~~A~~l~~~~~~ 97 (99)
T cd05508 72 HNAIIYNGGDHKLTQAAKAIVKICEQ 97 (99)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999877653
No 19
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.34 E-value=1.7e-12 Score=127.86 Aligned_cols=92 Identities=18% Similarity=0.282 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHH
Q 000283 599 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 678 (1724)
Q Consensus 599 ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVW 678 (1724)
+.+.|..|+..+..++.+++|..||+. ...++|.++|++||||+||+.|+..+.|. +.+.|.+|+++||
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~----------~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~-s~~~f~~D~~li~ 70 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTD----------FIAPGYSSIIKHPMDFSTMKEKIKNNDYQ-SIEEFKDDFKLMC 70 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCc----------cccccHHHHHcCccCHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Confidence 357899999999999999999999975 24688999999999999999999999999 7888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhh
Q 000283 679 HHICTAYSDQSDLLQLAGKLCQN 701 (1724)
Q Consensus 679 sN~~tyN~dgSEVv~LAekLSqi 701 (1724)
.||..||++++.++.+|..|.+.
T Consensus 71 ~Na~~yN~~~s~~~~~A~~L~~~ 93 (98)
T cd05513 71 ENAMKYNKPDTIYYKAAKKLLHS 93 (98)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHh
Confidence 99999999999999999988653
No 20
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.31 E-value=3.2e-12 Score=128.52 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHh
Q 000283 601 KQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHH 680 (1724)
Q Consensus 601 KrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN 680 (1724)
..|+.|++.++.++.+++|..||+. ..+++|..+|++||||+||+.|+..+.|. +...|..|++++|+|
T Consensus 6 ~~L~~il~~l~~~~~~~~F~~pv~~----------~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~-s~~ef~~Dv~li~~N 74 (112)
T cd05528 6 LFLRDVLKRLASDKRFNAFTKPVDE----------EEVPDYYEIIKQPMDLQTILQKLDTHQYL-TAKDFLKDIDLIVTN 74 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCc----------cccCcHHHHHcCCCCHHHHHHHHcCCCcC-CHHHHHHHHHHHHHH
Confidence 4678999999999999999999976 24788999999999999999999999998 677799999999999
Q ss_pred hhhhcCCC----chHHHHHHHhhhhhHHHHHHhh
Q 000283 681 ICTAYSDQ----SDLLQLAGKLCQNFEVLYKKEV 710 (1724)
Q Consensus 681 ~~tyN~dg----SEVv~LAekLSqiFEsrYkKqV 710 (1724)
|..||+.+ +.|+.+|..|.+.|...+.+.+
T Consensus 75 a~~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~ 108 (112)
T cd05528 75 ALEYNPDRDPADKLIRSRACELRDEVHAMIEAEL 108 (112)
T ss_pred HHHHCCCCCccccHHHHHHHHHHHHHHHHHHhcC
Confidence 99999984 6899999999999998887654
No 21
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.28 E-value=5.3e-12 Score=124.17 Aligned_cols=89 Identities=18% Similarity=0.260 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHh
Q 000283 601 KQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHH 680 (1724)
Q Consensus 601 KrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN 680 (1724)
..++.+|..|..++.+++|..||+. ..+++|..+|++||||+||+.|+..+.|. +.+.|..|++++|.|
T Consensus 4 ~~l~~il~~l~~~~~~~~F~~pVd~----------~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~D~~li~~N 72 (98)
T cd05512 4 VLLRKTLDQLQEKDTAEIFSEPVDL----------SEVPDYLDHIKQPMDFSTMRKKLESQRYR-TLEDFEADFNLIINN 72 (98)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCc----------cccCCHHHHhcCCcCHHHHHHHHhCCCCC-CHHHHHHHHHHHHHH
Confidence 4578899999999999999999976 24788999999999999999999999999 678899999999999
Q ss_pred hhhhcCCCchHHHHHHHhhh
Q 000283 681 ICTAYSDQSDLLQLAGKLCQ 700 (1724)
Q Consensus 681 ~~tyN~dgSEVv~LAekLSq 700 (1724)
|..||+.++.++..|..|..
T Consensus 73 a~~yN~~~s~~~~~A~~l~~ 92 (98)
T cd05512 73 CLAYNAKDTIFYRAAVRLRD 92 (98)
T ss_pred HHHHCCCCCHHHHHHHHHHH
Confidence 99999999999999998865
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.25 E-value=1.3e-11 Score=123.96 Aligned_cols=97 Identities=18% Similarity=0.247 Sum_probs=87.8
Q ss_pred HHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHhhhh
Q 000283 604 RKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICT 683 (1724)
Q Consensus 604 r~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN~~t 683 (1724)
+.|+..+..++.+++|..||++. ..++|..+|++||||+||+.|+..+.|. +.+.|.+|++++|.||..
T Consensus 6 ~~ii~~l~~~~~s~~F~~pv~~~----------~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~-s~~ef~~Dv~li~~Na~~ 74 (112)
T cd05511 6 DEIVNELKNLPDSWPFHTPVNKK----------KVPDYYKIIKRPMDLQTIRKKISKHKYQ-SREEFLEDIELIVDNSVL 74 (112)
T ss_pred HHHHHHHHhCCCchhhcCCCChh----------hcccHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999762 3678999999999999999999999999 778899999999999999
Q ss_pred hcCCCchHHHHHHHhhhhhHHHHHHhhh
Q 000283 684 AYSDQSDLLQLAGKLCQNFEVLYKKEVL 711 (1724)
Q Consensus 684 yN~dgSEVv~LAekLSqiFEsrYkKqVL 711 (1724)
||+.++.+..+|..|...|+..+.....
T Consensus 75 yN~~~s~i~~~A~~l~~~~~~~~~~~~~ 102 (112)
T cd05511 75 YNGPDSVYTKKAKEMLELAEELLAEREE 102 (112)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999887776543
No 23
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.25 E-value=1.8e-11 Score=121.65 Aligned_cols=103 Identities=12% Similarity=0.201 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHH
Q 000283 600 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 679 (1724)
Q Consensus 600 mKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWs 679 (1724)
+++|+.|+..+....... ..|+...++.++ ...++++|+.+|++||||+||+.|+..+.|. +.+.|..|++++|.
T Consensus 2 ~~~~~~~~~~i~~~~d~~--~~~~a~~F~~~p--~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~l~~~ 76 (105)
T cd05515 2 QQKLWELYNAVKNYTDGR--GRRLSLIFMRLP--SKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQ-SLDDMVSDFVLMFD 76 (105)
T ss_pred hHHHHHHHHHHHHhhCcC--CCcccHHhccCC--CcccCCcHHHHcCCCcCHHHHHHHHccCCCC-CHHHHHHHHHHHHH
Confidence 578999999998543321 333333333332 2356789999999999999999999999999 67789999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhhhhHHHHH
Q 000283 680 HICTAYSDQSDLLQLAGKLCQNFEVLYK 707 (1724)
Q Consensus 680 N~~tyN~dgSEVv~LAekLSqiFEsrYk 707 (1724)
|+.+||+.++.+...|..|.+.|...+.
T Consensus 77 Na~~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 77 NACKYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998887654
No 24
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.25 E-value=1.6e-11 Score=121.34 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhcc------hhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhh
Q 000283 600 MKQCRKVLRCAAAAD------EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLED 673 (1724)
Q Consensus 600 mKrCr~VL~~Ll~s~------~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeD 673 (1724)
-+.|+.|+..+.... -+++|..|++. ..+++|..+|++||||++|..|+..|.|. +...|..|
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~----------~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~-s~~~f~~D 70 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSK----------KLYPDYYVIIKRPIALDQIKRRIEGRAYK-SLEEFLED 70 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCC----------CCCcCHHHHcCCCcCHHHHHHHHccCCCC-CHHHHHHH
Confidence 478999999999443 36677766543 45788999999999999999999999999 67779999
Q ss_pred HHHHHHhhhhhcCCCchHHHHHHHhhhhhHHHH
Q 000283 674 VREVWHHICTAYSDQSDLLQLAGKLCQNFEVLY 706 (1724)
Q Consensus 674 VRLVWsN~~tyN~dgSEVv~LAekLSqiFEsrY 706 (1724)
++++|.|+..||++++.+..+|..|.+.|+..|
T Consensus 71 ~~li~~Na~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 71 FHLMFANARTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988754
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.24 E-value=2.4e-11 Score=122.34 Aligned_cols=106 Identities=16% Similarity=0.213 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHH
Q 000283 600 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 679 (1724)
Q Consensus 600 mKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWs 679 (1724)
++.|..|+..+...... -+.++...++.+. ...++|+|+.+|++||||+||+.|+..+.|. +...|.+|+++||.
T Consensus 4 ~~~c~~il~~l~~~~~~--~g~~l~~~F~~~p--~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~-s~~~f~~D~~lm~~ 78 (113)
T cd05524 4 IAVCQELYDTIRNYKSE--DGRILCESFIRVP--KRRNEPEYYEVVSNPIDLLKIQQKLKTEEYD-DVDDLTADFELLIN 78 (113)
T ss_pred HHHHHHHHHHHHhhccc--CCCchhHHHhcCC--CcccCCCHHHHhCCccCHHHHHHHhCcCCCC-CHHHHHHHHHHHHH
Confidence 68999999999954332 1222222233322 2467889999999999999999999999999 77779999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhhhhHHHHHHhh
Q 000283 680 HICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 710 (1724)
Q Consensus 680 N~~tyN~dgSEVv~LAekLSqiFEsrYkKqV 710 (1724)
|+..||+.++.+...|..|.+.|+..+.+++
T Consensus 79 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 79 NAKAYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999888765
No 26
>smart00297 BROMO bromo domain.
Probab=99.19 E-value=5e-11 Score=116.22 Aligned_cols=100 Identities=23% Similarity=0.311 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHH
Q 000283 598 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 677 (1724)
Q Consensus 598 ~ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLV 677 (1724)
.+...|..|++.+..++.+++|..|++.. .+++|..+|.+||||++|..|+..|.|. +...|..|++++
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~F~~~~~~~----------~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~-s~~ef~~D~~li 75 (107)
T smart00297 7 KLQSLLKAVLDKLDSHRLSWPFLKPVDRK----------EAPDYYDIIKKPMDLSTIKKKLENGKYS-SVEEFVADVQLM 75 (107)
T ss_pred HHHHHHHHHHHHHHhCccchhhccCCChh----------hccCHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHH
Confidence 35677888888888889999999998762 2678999999999999999999999998 677799999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhhhhHHHHHH
Q 000283 678 WHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 708 (1724)
Q Consensus 678 WsN~~tyN~dgSEVv~LAekLSqiFEsrYkK 708 (1724)
|.||..||+.++.++..|..|...|+..+.+
T Consensus 76 ~~Na~~~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 76 FSNAKTYNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987764
No 27
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.19 E-value=5.2e-11 Score=122.26 Aligned_cols=99 Identities=21% Similarity=0.136 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHHH---hcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhh
Q 000283 597 DVIMKQCRKVLRCAA---AADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLED 673 (1724)
Q Consensus 597 d~ImKrCr~VL~~Ll---~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeD 673 (1724)
+...++|..+++.++ ..+.+++|.+||+... +.++|..+|++||||+||..|+..|.|. +.+.|.+|
T Consensus 23 ~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~---------~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~-s~~~f~~D 92 (128)
T cd05529 23 DEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA---------WYPDYWNRVPVPMDLETIRSRLENRYYR-SLEALRHD 92 (128)
T ss_pred HHHHHHHHHHHHHHHhcccCcccccccCCCCccc---------cCCcHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHH
Confidence 445788999999999 8999999999997632 5788999999999999999999999999 68889999
Q ss_pred HHHHHHhhhhhcCCCchHHHHHHHhhhhhHHH
Q 000283 674 VREVWHHICTAYSDQSDLLQLAGKLCQNFEVL 705 (1724)
Q Consensus 674 VRLVWsN~~tyN~dgSEVv~LAekLSqiFEsr 705 (1724)
++++|.||..||+.++.+..+|..|.+.|+..
T Consensus 93 v~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~ 124 (128)
T cd05529 93 VRLILSNAETFNEPNSEIAKKAKRLSDWLLRI 124 (128)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887764
No 28
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.17 E-value=5.3e-11 Score=111.36 Aligned_cols=84 Identities=24% Similarity=0.374 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHhhh
Q 000283 603 CRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHIC 682 (1724)
Q Consensus 603 Cr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN~~ 682 (1724)
|+.||..++.++.+++|..|++. ..+++|..+|++||||.+|+.|+.+|.|. +.+.|..||+++|.|+.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~----------~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~-s~~~f~~Dv~~i~~Na~ 69 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDP----------KEYPDYYEIIKNPMDLSTIRKKLENGKYK-SIEEFEADVRLIFQNAR 69 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHT----------TTSTTHHHHSSSS--HHHHHHHHHTTSSS-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCCh----------hhCCCHHHHHhhccchhhhhHHhhccchh-hHHHHHHHHHHHHHHHH
Confidence 99999999999999999999844 55778999999999999999999999999 78889999999999999
Q ss_pred hhcCCCchHHHHHHH
Q 000283 683 TAYSDQSDLLQLAGK 697 (1724)
Q Consensus 683 tyN~dgSEVv~LAek 697 (1724)
.||+.++.+..+|++
T Consensus 70 ~yn~~~s~~~~~A~~ 84 (84)
T PF00439_consen 70 RYNPPDSPIYKAAEK 84 (84)
T ss_dssp HHSCTTSHHHHHHHH
T ss_pred HHCCCcCHHHHHhcC
Confidence 999999999998874
No 29
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.15 E-value=8.4e-11 Score=110.46 Aligned_cols=95 Identities=27% Similarity=0.339 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhc--chhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHH
Q 000283 600 MKQCRKVLRCAAAA--DEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 677 (1724)
Q Consensus 600 mKrCr~VL~~Ll~s--~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLV 677 (1724)
...|..++..+... +.+++|..|++. ..+++|..+|++||||++|..|+..|.|. +...|.+|++++
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~----------~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~-s~~~f~~D~~li 70 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDP----------KEAPDYYEVIKNPMDLSTIKKKLKNGEYK-SLEEFEADVRLI 70 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCCh----------hcCCCHHHHHhCcccHHHHHHHHhcCCCC-CHHHHHHHHHHH
Confidence 46799999999988 899999999976 45678999999999999999999999998 777799999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhhhhHHH
Q 000283 678 WHHICTAYSDQSDLLQLAGKLCQNFEVL 705 (1724)
Q Consensus 678 WsN~~tyN~dgSEVv~LAekLSqiFEsr 705 (1724)
|.||..||+.++.+..+|..|...|+..
T Consensus 71 ~~Na~~~n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 71 FSNAKTYNGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998888754
No 30
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.13 E-value=1.5e-10 Score=115.66 Aligned_cols=101 Identities=16% Similarity=0.248 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHH
Q 000283 599 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 678 (1724)
Q Consensus 599 ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVW 678 (1724)
+.+.|+.|+..+...... -+.++..+++.+++ ...+++|..+|++||||++|+.|+..|.|. +.+.|.+|+++||
T Consensus 3 l~~~l~~i~~~i~~~kd~--~g~~~s~~F~~lp~--k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~-s~~ef~~D~~l~f 77 (106)
T cd05525 3 LAQVLKEICDAIITYKDS--NGQSLAIPFINLPS--KKKNPDYYERITDPVDLSTIEKQILTGYYK-TPEAFDSDMLKVF 77 (106)
T ss_pred HHHHHHHHHHHHHHhhcc--CCCcccHhhccCCC--cccCCchhhhCCCCcCHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Confidence 357789999999854332 23444454554433 367789999999999999999999999999 6888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHH
Q 000283 679 HHICTAYSDQSDLLQLAGKLCQNFEV 704 (1724)
Q Consensus 679 sN~~tyN~dgSEVv~LAekLSqiFEs 704 (1724)
.|+..||++++.++..|..|.+.|+.
T Consensus 78 ~Na~~yn~~~S~i~~~A~~L~~~f~~ 103 (106)
T cd05525 78 RNAEKYYGRKSPIGRDVCRLRKAYYQ 103 (106)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998875
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.11 E-value=1.6e-10 Score=114.85 Aligned_cols=99 Identities=13% Similarity=0.216 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHh
Q 000283 601 KQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHH 680 (1724)
Q Consensus 601 KrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN 680 (1724)
||+..|+..++.... .-+.++...++.++ ...++++|..+|++||||+||+.|+..+.|. +.+.|.+|+++||.|
T Consensus 3 ~~~~~l~~~v~~~~d--~~gr~~~~~F~~~p--~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~-s~~ef~~D~~li~~N 77 (103)
T cd05518 3 KRMLALFLYVLEYRE--GSGRRLCDLFMEKP--SKKDYPDYYKIILEPIDLKTIEHNIRNDKYA-TEEELMDDFKLMFRN 77 (103)
T ss_pred HHHHHHHHHHHHhhc--cCCCcccHHHhcCC--CcccCccHHHHcCCCcCHHHHHHHHCCCCCC-CHHHHHHHHHHHHHH
Confidence 678888888884321 22333333344322 3467899999999999999999999999999 677799999999999
Q ss_pred hhhhcCCCchHHHHHHHhhhhhHH
Q 000283 681 ICTAYSDQSDLLQLAGKLCQNFEV 704 (1724)
Q Consensus 681 ~~tyN~dgSEVv~LAekLSqiFEs 704 (1724)
|..||+.++.|..+|..|...|+.
T Consensus 78 a~~yN~~~s~i~~~A~~le~~~~~ 101 (103)
T cd05518 78 ARHYNEEGSQVYEDANILEKVLKE 101 (103)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999877764
No 32
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.10 E-value=1.6e-10 Score=114.80 Aligned_cols=99 Identities=18% Similarity=0.228 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHh
Q 000283 601 KQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHH 680 (1724)
Q Consensus 601 KrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN 680 (1724)
+.|+.++..++..... .+.|+...++.++ ...++++|+.+|++||||+||+.|+..+.|. +...|..|+++||.|
T Consensus 3 ~~~~~l~~~i~~~~d~--~gr~~~~~F~~lp--~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~lm~~N 77 (103)
T cd05517 3 QILEQLLEAVMTATDP--SGRLISELFQKLP--SKVLYPDYYAVIKEPIDLKTIAQRIQSGYYK-SIEDMEKDLDLMVKN 77 (103)
T ss_pred HHHHHHHHHHHHhhCc--CCCChhHHHhcCC--CCCCCCCHHHHcCCCcCHHHHHHHHCcCCCC-CHHHHHHHHHHHHHH
Confidence 5789999999965543 4555555555543 3467889999999999999999999999999 777799999999999
Q ss_pred hhhhcCCCchHHHHHHHhhhhhHH
Q 000283 681 ICTAYSDQSDLLQLAGKLCQNFEV 704 (1724)
Q Consensus 681 ~~tyN~dgSEVv~LAekLSqiFEs 704 (1724)
+..||++++.+...|..|...|+.
T Consensus 78 a~~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 78 AKTFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999888763
No 33
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.06 E-value=2.7e-10 Score=113.18 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=64.2
Q ss_pred CCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCchHHHHHHHhhhhhHH
Q 000283 636 EGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEV 704 (1724)
Q Consensus 636 qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN~~tyN~dgSEVv~LAekLSqiFEs 704 (1724)
..+++|..+|++||||+||..|+..|.|. +...|..|+++||.||..||+.++.++.+|..|.+.|+.
T Consensus 34 ~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~~ 101 (103)
T cd05520 34 RKYPDYYQEIKNPISLQQIRTKLKNGEYE-TLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLMQA 101 (103)
T ss_pred ccCCCHHHHcCCCcCHHHHHHHHccCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999 677799999999999999999999999999999998875
No 34
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.97 E-value=8.5e-10 Score=111.08 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=72.1
Q ss_pred cchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCchHH
Q 000283 613 ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLL 692 (1724)
Q Consensus 613 s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN~~tyN~dgSEVv 692 (1724)
.+.+.+|.+||.... +...++++|..+|++||||+||+.|+..|.|. +.+.|.+|++++|+||..||++++.+.
T Consensus 16 lp~~~~~~~~v~~~~-----~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~Dv~LI~~N~~~yNg~~s~~~ 89 (109)
T cd05492 16 LPPDTTNRAIVLNKR-----GKATKLPKRRRLIHTHLDVADIQEKINSEKYT-SLEEFKADALLLLHNTAIFHGADSEQY 89 (109)
T ss_pred CcccccccccccccC-----chhccCCCHHHHhCCCCcHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 455788999986522 34457888999999999999999999999999 688899999999999999999999999
Q ss_pred HHHHHhhhh
Q 000283 693 QLAGKLCQN 701 (1724)
Q Consensus 693 ~LAekLSqi 701 (1724)
.+|..|.+.
T Consensus 90 ~~A~~l~~d 98 (109)
T cd05492 90 DAARWLYRD 98 (109)
T ss_pred HHHHHHHHH
Confidence 999988653
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.96 E-value=1.3e-09 Score=109.03 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHH
Q 000283 599 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 678 (1724)
Q Consensus 599 ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVW 678 (1724)
+-++|+.+++.+....... +.|+...+..+. ...++++|+.+|++||||+||+.|+.. |. +.+.|.+|++++|
T Consensus 2 l~~~~~~l~~~i~~~~~~~--g~~~~~~F~~lp--~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~-s~~ef~~D~~li~ 74 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEEN--GIEIHPIFNVLP--LRKDYPDYYKIIKNPLSLNTVKKRLPH--YT-NAQEFVNDLAQIP 74 (106)
T ss_pred HHHHHHHHHHHHHhhcCcC--CCCchHhhhcCC--ccccCccHHHHhcCCCCHHHHHHHHHc--CC-CHHHHHHHHHHHH
Confidence 3588999999998554432 455555555433 356889999999999999999999998 88 6777999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHH
Q 000283 679 HHICTAYSDQSDLLQLAGKLCQNFEV 704 (1724)
Q Consensus 679 sN~~tyN~dgSEVv~LAekLSqiFEs 704 (1724)
.|+..||+.++.+...|..|.+.|..
T Consensus 75 ~Na~~yN~~~s~i~~~A~~le~~~~~ 100 (106)
T cd05521 75 WNARLYNTKGSVIYKYALILEKYIND 100 (106)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988777664
No 36
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.92 E-value=3.4e-09 Score=105.40 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHh---cchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHH
Q 000283 600 MKQCRKVLRCAAA---ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 676 (1724)
Q Consensus 600 mKrCr~VL~~Ll~---s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRL 676 (1724)
|+.+-..++.+.. .+-+++|.+++++ ...++|..+|++||||++|+.|+..+.|. +...|..|+++
T Consensus 6 ~~~i~~~v~~~~d~~g~~l~~~F~~~p~~----------~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~-s~~~f~~D~~l 74 (104)
T cd05522 6 IKNILKGLRKERDENGRLLTLHFEKLPDK----------AREPEYYQEISNPISLDDIKKKVKRRKYK-SFDQFLNDLNL 74 (104)
T ss_pred HHHHHHHHHHHhCcCCCcccHHHhcCCCc----------cccCcHHHHhCCCcCHHHHHHHHccCCCC-CHHHHHHHHHH
Confidence 4444444444443 2345555555433 46788999999999999999999999998 67779999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhhhhHH
Q 000283 677 VWHHICTAYSDQSDLLQLAGKLCQNFEV 704 (1724)
Q Consensus 677 VWsN~~tyN~dgSEVv~LAekLSqiFEs 704 (1724)
+|.|+..||+.++.+..+|..|.+.|+.
T Consensus 75 i~~Na~~yn~~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 75 MFENAKLYNENDSQEYKDAVLLEKEARL 102 (104)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888875
No 37
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.91 E-value=3.1e-10 Score=126.83 Aligned_cols=58 Identities=45% Similarity=1.210 Sum_probs=51.3
Q ss_pred CCCCCccc---cccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCCC
Q 000283 744 IPKAPWDE---GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 801 (1724)
Q Consensus 744 lP~~pw~d---~~C~VCg~~~d~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~ 801 (1724)
+..+-|+| ..|.+||...+.+++|+||.||++||||||.|||.+.|+|.|.|..|...
T Consensus 271 vk~yrwqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 271 VKTYRWQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred HHhheeeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 44567875 46788898889999999999999999999999999999999999999754
No 38
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=98.70 E-value=1.2e-08 Score=135.81 Aligned_cols=94 Identities=22% Similarity=0.355 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHhhh
Q 000283 603 CRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHIC 682 (1724)
Q Consensus 603 Cr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN~~ 682 (1724)
|..||.+|..++.+|+|..||...+ ++||.+||++||||.||..++..|.|. .++.|+.|+++||+||.
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~----------vp~Y~~IIk~Pmdl~tir~k~~~~~Y~-~~eef~~Di~lvf~Nc~ 1374 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE----------VPDYYDIIKKPMDLSTIREKLSKGIYP-SPEEFATDIELVFDNCE 1374 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh----------cccHHHHhcChhHHHHHHHHHhcccCC-CHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998743 678999999999999999999999999 67779999999999999
Q ss_pred hhcCCCchHHHHHHHhhhhhHHHHHH
Q 000283 683 TAYSDQSDLLQLAGKLCQNFEVLYKK 708 (1724)
Q Consensus 683 tyN~dgSEVv~LAekLSqiFEsrYkK 708 (1724)
+||.+ ++|......|..-|+.++.+
T Consensus 1375 ~yN~~-s~i~~ag~~l~~ff~~~~~~ 1399 (1404)
T KOG1245|consen 1375 TYNED-SEIGRAGTCLRRFFHKRWRK 1399 (1404)
T ss_pred Hhccc-hhhhhhcchHHHHHHHHHHh
Confidence 99999 88988888888888865543
No 39
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.64 E-value=8.5e-09 Score=126.60 Aligned_cols=51 Identities=39% Similarity=1.041 Sum_probs=47.5
Q ss_pred cccccccCCCCCCCeEEecCCCCC-CcccccCCCCCCCCCCCccCccCCCCC
Q 000283 752 GVCKVCGIDKDDDNVLLCDTCDSG-YHTYCLTPPLTRVPEGNWYCPPCLSGN 802 (1724)
Q Consensus 752 ~~C~VCg~~~d~~~LLlCD~Cd~~-YHl~CL~PPL~~VP~GdW~Cp~C~~~~ 802 (1724)
..|.+|...+.++.||+||.|+.+ ||+|||+|+|.++|-+.|||++|+--+
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~ 267 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLE 267 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhh
Confidence 469999999999999999999999 999999999999999999999997653
No 40
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.38 E-value=1e-07 Score=82.80 Aligned_cols=48 Identities=44% Similarity=1.234 Sum_probs=42.9
Q ss_pred ccccccCCCCCCCeEEecCCCCCCcccccCCCCC--CCCCCCccCccCCC
Q 000283 753 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLT--RVPEGNWYCPPCLS 800 (1724)
Q Consensus 753 ~C~VCg~~~d~~~LLlCD~Cd~~YHl~CL~PPL~--~VP~GdW~Cp~C~~ 800 (1724)
+|.+|++..+.+.||.||.|+.+||+.|+.|++. .++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4899999889999999999999999999999987 55667999999963
No 41
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.32 E-value=1.7e-07 Score=114.96 Aligned_cols=53 Identities=32% Similarity=0.939 Sum_probs=47.0
Q ss_pred ccccccccCCCCCCCeEEecCCCCCCcccccCCC--CCCCCCCCccCccCCCCCc
Q 000283 751 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPP--LTRVPEGNWYCPPCLSGNC 803 (1724)
Q Consensus 751 d~~C~VCg~~~d~~~LLlCD~Cd~~YHl~CL~PP--L~~VP~GdW~Cp~C~~~~~ 803 (1724)
.++|..|++...-..+++||+|++.||++||.|| ...+|.|.|||+.|.+...
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~ 307 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSV 307 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeeee
Confidence 4589999877766778999999999999999999 5789999999999988743
No 42
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=98.31 E-value=1e-06 Score=104.55 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHH
Q 000283 599 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 678 (1724)
Q Consensus 599 ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVW 678 (1724)
+-++|..++..+.. .......++-..++.+ +...-.|+|+.||+.||||++|.+++..+.|. +.+.|..|..+||
T Consensus 143 ~~~~~~~i~~~~~~--~~~~~~~~~s~~F~~~--p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~-s~eef~~D~~lM~ 217 (371)
T COG5076 143 LYADNKAIAKFKKQ--LFLRDGRFLSSIFLGL--PSKREYPDYYEIIKSPMDLLTIQKKLKNGRYK-SFEEFVSDLNLMF 217 (371)
T ss_pred HHHHHHHHHHHHHH--hhcccccccccccccC--CccccCCChheeecchhhHHHHHHHHHhhhhh-hHHHHHHHHHHHH
Confidence 56777777776651 1122233332223222 23455778999999999999999999999999 7888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHHHHHHhhhhhhhc
Q 000283 679 HHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLTLVQK 716 (1724)
Q Consensus 679 sN~~tyN~dgSEVv~LAekLSqiFEsrYkKqVL~~vQk 716 (1724)
.||..||++++.|...|..|...|..++..+.....+.
T Consensus 218 ~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~~~~ 255 (371)
T COG5076 218 DNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEMLEL 255 (371)
T ss_pred HhhhhccCCCcchhhhhHHHHHHHHHHHHhccccchhh
Confidence 99999999999999999999999999999888766553
No 43
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=98.26 E-value=2.5e-07 Score=120.45 Aligned_cols=166 Identities=22% Similarity=0.437 Sum_probs=120.4
Q ss_pred cccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCCCCc----CCCCCCCCCccccCccccccchhh
Q 000283 752 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNC----KNKYMSQVPHVSSRIPKRRHQGEF 827 (1724)
Q Consensus 752 ~~C~VCg~~~d~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~~~----~~~g~se~~~l~s~~qrKk~~gef 827 (1724)
..|..|.+.... .+++|+.|...||.+|+.||++.+|.|+|.|+.|..... ...+|.....-++...+..+...+
T Consensus 156 ~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~~~ 234 (904)
T KOG1246|consen 156 PQCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYADNF 234 (904)
T ss_pred hhhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHhhhh
Confidence 479999988777 555999999999999999999999999999999988732 233555555556666666666677
Q ss_pred hhhhhhhhchhh--hhhhhcccccCChhH--HHHHHHHHHHHhhccchhhHHhhhhh--cccchhHHHHHHcHHHHhccc
Q 000283 828 TCRILEEVFHLA--ATMEMRDYWDYSDKE--RIFLLKFLCDELLNSTNIREHLERCA--SVSVDLQQKIRSLSLEWRNLK 901 (1724)
Q Consensus 828 ~~~f~e~l~~La--~d~iEKEFWeLSv~E--RIkLLKfLcDEaLsSa~IRehLeqce--d~stELrKK~rEl~rElKNLp 901 (1724)
...|+....+.. ++..|++||++.... .+.+ .|..|+. +........... ......+++|+...||++++|
T Consensus 235 ~~~~~~~~~~~~~~~~~vE~e~w~~v~~~~~~~~~-~~g~d~~--~~~~~s~~~~~~~~~~~~~~~~~y~~s~wnL~~i~ 311 (904)
T KOG1246|consen 235 KKDYFPKSKNSPDSTEDVEKEFWRLVASNLESVEV-LYGADLS--TKEFGSGFPKSASGPLLGSEAEKYSNSGWNLNNIP 311 (904)
T ss_pred hccccccccCCCCchHHHHHHHHHhhcccccceee-eeccchh--hccccccccccCCCCCCCcchhhhccCcccccccc
Confidence 777777766554 568999999986654 2222 3444431 111111111111 112257799999999999999
Q ss_pred chhhhhhhcccccccccccC
Q 000283 902 FREEILAGKVARDKASVLSG 921 (1724)
Q Consensus 902 ~~~eSLl~~~k~diSgm~d~ 921 (1724)
...++++++...+++|+...
T Consensus 312 ~~~~svl~~~~~di~g~~~p 331 (904)
T KOG1246|consen 312 RLEGSVLSHIDTDISGVTVP 331 (904)
T ss_pred cCCccccccccCCcCccccc
Confidence 99999999999999999885
No 44
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.19 E-value=4.6e-07 Score=102.53 Aligned_cols=58 Identities=31% Similarity=0.812 Sum_probs=48.6
Q ss_pred cCCCCCCcccc---ccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCc-cCCCC
Q 000283 742 SEIPKAPWDEG---VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCP-PCLSG 801 (1724)
Q Consensus 742 s~lP~~pw~d~---~C~VCg~~~d~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp-~C~~~ 801 (1724)
..+...+|.|. .|.+|++...++++++||.||++||++|.+ |..+|.|.|.|. .|...
T Consensus 302 ~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 302 GQYKTYFWKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCREA 363 (381)
T ss_pred hHHhhcchhhcccHhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHHh
Confidence 34455788765 577788888999999999999999999999 999999999998 45443
No 45
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.16 E-value=6.5e-06 Score=83.67 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHH
Q 000283 600 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 679 (1724)
Q Consensus 600 mKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWs 679 (1724)
-+.-..++..++.+.+. -+.++..++..++.... .|..+|++||||..|+.|+..|.|. ..+.|.+|+.++|.
T Consensus 5 q~~l~~l~~~V~~~~D~--~Gr~~s~~f~~LP~~~~----~~~~~ik~Pi~l~~Ik~ki~~~~Y~-~ld~~~~D~~lmf~ 77 (110)
T cd05526 5 QELLATLFVSVMNHQDE--EGRCYSDSLAELPELAV----DGVGPKKIPLTLDIIKRNVDKGRYR-RLDKFQEDMFEVLE 77 (110)
T ss_pred HHHHHHHHHHHHhccCC--CCCCchHHHHHCCCccc----CchhhhcCCccHHHHHHHHHcCCcC-cHHHHHHHHHHHHH
Confidence 44556677777754432 25556666666554222 2346899999999999999999999 78889999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhhhhHHHHHHhh
Q 000283 680 HICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 710 (1724)
Q Consensus 680 N~~tyN~dgSEVv~LAekLSqiFEsrYkKqV 710 (1724)
|+.+||..++.|...|..|+..|...+.+..
T Consensus 78 NAr~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 78 RARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998887653
No 46
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.04 E-value=2.4e-06 Score=90.42 Aligned_cols=31 Identities=48% Similarity=1.187 Sum_probs=28.0
Q ss_pred CCcccccCCCCCCCCCCCccCccCCCCCcCC
Q 000283 775 GYHTYCLTPPLTRVPEGNWYCPPCLSGNCKN 805 (1724)
Q Consensus 775 ~YHl~CL~PPL~~VP~GdW~Cp~C~~~~~~~ 805 (1724)
+||++||+|||+.+|+|+|+||.|.......
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~ 31 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQ 31 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCC
Confidence 6999999999999999999999999876543
No 48
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=97.87 E-value=2.9e-05 Score=71.10 Aligned_cols=58 Identities=36% Similarity=0.622 Sum_probs=49.7
Q ss_pred hhhhhHHHHHHHHHHhHhhcCCCCCCCHHHHHHHHccCCCccccCCCCccccccccccchhhhhhhHHHHHHHhhccccc
Q 000283 255 ELIGDVIQSWELLWRFSEVLGLEEPLSFKELEEELRNGSAFTLRSSSTSTVAQEIGQAFIAEEMESLREAAHVRLASNTS 334 (1724)
Q Consensus 255 ~lvgd~lq~we~l~rf~eilgl~e~~s~eele~el~~~~~~~~~~~~~~~v~~~~~~~~~~~e~~~~~e~~~~~~a~~t~ 334 (1724)
+.+||.|+|||||..|+++|+|+. +|++++|+.|.+.. .
T Consensus 2 ~~~~~~L~v~~Fl~~F~~~L~L~~-ftlddf~~AL~~~~------------------------~---------------- 40 (61)
T PF02791_consen 2 EAFGDLLMVWEFLNTFGEVLGLSP-FTLDDFEQALLCND------------------------P---------------- 40 (61)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCc-CCHHHHHHHHcCCC------------------------c----------------
Confidence 679999999999999999999998 79999999998710 0
Q ss_pred cCcccchhhhhHHHHHHHHHHHH
Q 000283 335 SGHANVGLANVLCSLLILLLGEL 357 (1724)
Q Consensus 335 ~~~~~v~l~~~h~~ll~~l~~el 357 (1724)
. ..|.++|++||+.++++.
T Consensus 41 ---~-~ll~ei~~~LL~~l~~~~ 59 (61)
T PF02791_consen 41 ---S-GLLAEIHCALLKALLADE 59 (61)
T ss_pred ---c-hhHHHHHHHHHHHHHhcc
Confidence 0 178999999999998764
No 49
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.80 E-value=1.1e-05 Score=82.28 Aligned_cols=79 Identities=10% Similarity=0.091 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhccccc------CCChhhhHhh
Q 000283 600 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAY------GGSHEAFLED 673 (1724)
Q Consensus 600 mKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y------~gs~E~FAeD 673 (1724)
+..|..+|+.+..++.+++|..||++. ..++++|+++|++||||+||+.++..+.+ ....+.+..+
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~--------~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~ 76 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPP--------RRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADK 76 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCch--------hcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccc
Confidence 678888888888888999999999763 46778899999999999999999887633 1123346667
Q ss_pred HHHHHHhhhhhcC
Q 000283 674 VREVWHHICTAYS 686 (1724)
Q Consensus 674 VRLVWsN~~tyN~ 686 (1724)
+...|.++..++.
T Consensus 77 ~~~~~~~~~~~~~ 89 (114)
T cd05494 77 QIDDEGRRSPSNI 89 (114)
T ss_pred ccccccccCcccc
Confidence 7777777666553
No 50
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.66 E-value=1.8e-05 Score=97.92 Aligned_cols=49 Identities=45% Similarity=1.135 Sum_probs=44.8
Q ss_pred ccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCC
Q 000283 751 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCL 799 (1724)
Q Consensus 751 d~~C~VCg~~~d~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~ 799 (1724)
+-+|..|+...++.+.++|+.||..||.||..||++.||.|.|+|+.|.
T Consensus 68 crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~ 116 (694)
T KOG4443|consen 68 CRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCT 116 (694)
T ss_pred ceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHH
Confidence 3467778877899999999999999999999999999999999999994
No 51
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=97.65 E-value=8.9e-05 Score=68.53 Aligned_cols=37 Identities=30% Similarity=0.583 Sum_probs=33.5
Q ss_pred hhhhhhHHHHHHHHHHhHhhcCCCCCCC--HHHHHHHHcc
Q 000283 254 IELIGDVIQSWELLWRFSEVLGLEEPLS--FKELEEELRN 291 (1724)
Q Consensus 254 ~~lvgd~lq~we~l~rf~eilgl~e~~s--~eele~el~~ 291 (1724)
.+.+||+|||||||..|+++|||.+ ++ ++++++.|..
T Consensus 1 ~~~~~d~l~V~eFl~~F~~~L~L~~-f~~~l~~f~~Al~~ 39 (63)
T smart00571 1 NEAFGDLLMVYEFLRSFGKVLGLSP-FRATLEDFIAALKC 39 (63)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCc-chhhHHHHHHHHhc
Confidence 3689999999999999999999976 88 9999998876
No 52
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.65 E-value=8.9e-06 Score=109.28 Aligned_cols=52 Identities=48% Similarity=1.198 Sum_probs=49.2
Q ss_pred cccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCCCCc
Q 000283 752 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNC 803 (1724)
Q Consensus 752 ~~C~VCg~~~d~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~~~ 803 (1724)
..|.+|.+......|++||.|..+||++|+.|.+..+|.|+|+||.|....+
T Consensus 1109 ~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1109 ALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred hhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 5799999999999999999999999999999999999999999999998764
No 53
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.51 E-value=4.5e-05 Score=87.91 Aligned_cols=48 Identities=31% Similarity=0.801 Sum_probs=40.8
Q ss_pred cccccccCCCCCCCeEEecC--CC-CCCcccccCCCCCCCCCCCccCccCCCCCc
Q 000283 752 GVCKVCGIDKDDDNVLLCDT--CD-SGYHTYCLTPPLTRVPEGNWYCPPCLSGNC 803 (1724)
Q Consensus 752 ~~C~VCg~~~d~~~LLlCD~--Cd-~~YHl~CL~PPL~~VP~GdW~Cp~C~~~~~ 803 (1724)
.+|..+ ....+.|+-||. |+ .+||+.|.+ |...|+|.||||.|.....
T Consensus 220 ~yC~Cn--qvsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 220 TYCICN--QVSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred EEEEec--ccccccccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhhh
Confidence 356433 367899999998 99 999999999 9999999999999987644
No 54
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.50 E-value=2.7e-05 Score=93.43 Aligned_cols=48 Identities=44% Similarity=0.992 Sum_probs=44.4
Q ss_pred cccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCC----ccCccCC
Q 000283 752 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGN----WYCPPCL 799 (1724)
Q Consensus 752 ~~C~VCg~~~d~~~LLlCD~Cd~~YHl~CL~PPL~~VP~Gd----W~Cp~C~ 799 (1724)
..|.+|.+.++...+++||.|..-||+-||.|||+.+|+.. |.|..|-
T Consensus 545 ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 545 YSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred eeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 36999999999999999999999999999999999999874 9999993
No 55
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=97.45 E-value=0.00012 Score=64.39 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=33.9
Q ss_pred ceEeCChHHHHHHHHhh-cCCChhhHHHHHHHHHHhh
Q 000283 1205 WFSYQSDTEIEELIQWL-SDSDPRDKELAESILRWTK 1240 (1724)
Q Consensus 1205 W~~YesdeEIeeLi~WL-~~~~~rE~eLK~SIl~W~k 1240 (1724)
|++|.+.++|++|+.|| +|.+.||++|++.+..-+|
T Consensus 1 W~~~~~~e~ld~L~~aL~~prG~RE~~L~~~L~~~~k 37 (46)
T PF15614_consen 1 WGYYDDPEELDELLKALENPRGKRESKLKKELDKHRK 37 (46)
T ss_pred CccccCHHHHHHHHHHHcCcccHhHHHHHHHHHHHhc
Confidence 99999999999999999 9999999999999987654
No 56
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=97.34 E-value=0.00011 Score=93.05 Aligned_cols=84 Identities=19% Similarity=0.323 Sum_probs=71.2
Q ss_pred HHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHhhhh
Q 000283 604 RKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICT 683 (1724)
Q Consensus 604 r~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN~~t 683 (1724)
..+|..+-.+..+|+|.+||+. .++++|+.+|.+||||.|+..++..+.|. ....|.+|+..+|.||.-
T Consensus 612 ~~il~~l~~h~~awPf~~Pv~~----------~e~pdyy~~I~~pmDl~tM~~~l~~~~y~-~~~~f~ad~~~vf~ncr~ 680 (720)
T KOG1472|consen 612 QNILDQLQNHGDAWPFLKPVNK----------KEVPDYYDVIKHPMDLRTMQNRLKDNQYT-EVELFMADVVRVFANCRM 680 (720)
T ss_pred HhHHhhhhcCCccCCccCcccc----------ccCCcHHHHhcccccHHHHhhhccccchh-hHHHHHHHHHHHHhhhhc
Confidence 4567777899999999999976 56788999999999999999999999999 677799999999999999
Q ss_pred hcCCCchHHHHHHHh
Q 000283 684 AYSDQSDLLQLAGKL 698 (1724)
Q Consensus 684 yN~dgSEVv~LAekL 698 (1724)
||+....-...|..|
T Consensus 681 yn~~~~~y~k~~~~l 695 (720)
T KOG1472|consen 681 YNGSDTQYYKCAQAL 695 (720)
T ss_pred cCCccchheecccch
Confidence 998766443333333
No 57
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.19 E-value=0.00013 Score=92.70 Aligned_cols=49 Identities=41% Similarity=1.101 Sum_probs=44.0
Q ss_pred cccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCCCCc
Q 000283 752 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNC 803 (1724)
Q Consensus 752 ~~C~VCg~~~d~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~~~ 803 (1724)
..|.+|+ +.+.+|+||+|+..||.+|++||+..+|.++|.|+.|.+...
T Consensus 48 e~c~ic~---~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 48 EACRICA---DGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred hhhhhhc---CCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 3699995 789999999999999999999999999999999999955543
No 58
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.08 E-value=0.0004 Score=71.67 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=37.4
Q ss_pred CCCChhHHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCC
Q 000283 647 RPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSD 687 (1724)
Q Consensus 647 RPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN~~tyN~d 687 (1724)
-||||.||+.||.+|.|. .++.|.+|++++|+||..||++
T Consensus 63 y~MDL~tIe~RL~ng~Y~-tp~~F~~DiklI~~Nc~~ynd~ 102 (119)
T cd05491 63 YNMDLDTIEERLWNGYYA-TPKDFLKDIKRIVRDAKTIGDR 102 (119)
T ss_pred eccCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHhCCH
Confidence 479999999999999999 7888999999999999999965
No 59
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.93 E-value=0.00046 Score=90.70 Aligned_cols=53 Identities=28% Similarity=0.820 Sum_probs=44.7
Q ss_pred cccccccccCCCC--CCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCCCCcC
Q 000283 750 DEGVCKVCGIDKD--DDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCK 804 (1724)
Q Consensus 750 ~d~~C~VCg~~~d--~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~~~~ 804 (1724)
.+.+|.+|....- ...+|+||.|+.++|++|++ ..-+|+|.|.|..|......
T Consensus 218 ~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~ 272 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQR 272 (1051)
T ss_pred CCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCc
Confidence 3568999976553 48899999999999999999 56899999999999877543
No 60
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=96.89 E-value=0.0011 Score=64.76 Aligned_cols=73 Identities=30% Similarity=0.526 Sum_probs=56.1
Q ss_pred ceEEeccCchhHHHHHHHHHHHHHHHHHHhcCceEEEeccccccccccccccccccccccchhHhhhhcCCCCccccccc
Q 000283 60 EFLVEGRSSASVWRMVSQTLVHACRKIYEQTGVCKFRCRHDVFKIWSSYFVSVSEEATESSDSLSKFCCLSGPVNIPHLI 139 (1724)
Q Consensus 60 ef~~e~~s~~s~w~~vs~~~~~ac~~~~~~~g~~~~~c~h~~~~~~~~~~~~~~~~~~~~~~~l~kfc~~~g~~~~p~~~ 139 (1724)
++.++|.|...+|++|=+++=++.++ .|.+.. .+.+ -+||
T Consensus 11 ~~~~~~~S~~~~W~~vl~~v~~~r~~----~~~~~~-----------------------~~~~------isG~------- 50 (86)
T smart00542 11 DEVFKGESPEKCWEMVLERVQEARIV----ARLLQL-----------------------LPEG------VSGE------- 50 (86)
T ss_pred CCeEEeCCHHHHHHHHHHHHHHHHHH----cccCCC-----------------------CCCC------CCcH-------
Confidence 69999999999999999999887743 221111 0011 1244
Q ss_pred ccchhHHHHHHHHHHhhccCccccCHHHHHHHHHhCccccccccchhhcccC
Q 000283 140 RSNDELETSCKALVKWLDQDRFGLDVEFVQEIVEQLPRVRVCAEYTFLDKRR 191 (1724)
Q Consensus 140 ~~~~~~~~~~~~l~~wl~qdr~g~d~~fvqe~~e~lp~~~~c~~y~~l~~r~ 191 (1724)
|-|||--..|+-+||+|||++.|.+|.|--+|.
T Consensus 51 -------------------~mFGls~p~V~~lie~Lpga~~C~~Y~~~~~~~ 83 (86)
T smart00542 51 -------------------DMFGLSSPAVVKLIEQLPGVHQCTNYWFRYHRS 83 (86)
T ss_pred -------------------HHhCCCcHHHHHHHHhCCCchhhhhhhhccCCC
Confidence 679999999999999999999999999976554
No 61
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=96.82 E-value=0.00064 Score=65.78 Aligned_cols=73 Identities=29% Similarity=0.478 Sum_probs=46.0
Q ss_pred CcccceEEeccCchhHHHHHHHHHHHHHHHHHHhcCceEEEeccccccccccccccccccccccchhHhhhhcCCCCccc
Q 000283 56 DDIGEFLVEGRSSASVWRMVSQTLVHACRKIYEQTGVCKFRCRHDVFKIWSSYFVSVSEEATESSDSLSKFCCLSGPVNI 135 (1724)
Q Consensus 56 d~igef~~e~~s~~s~w~~vs~~~~~ac~~~~~~~g~~~~~c~h~~~~~~~~~~~~~~~~~~~~~~~l~kfc~~~g~~~~ 135 (1724)
+|-.++.++|.|+..+|++|-+++-.+...- + . ....+..-+||
T Consensus 11 ~d~p~~~~~g~s~~~~W~~i~~~v~~~r~~~----~--------~---------------------~~~~~~~isG~--- 54 (86)
T PF05965_consen 11 EDDPGEVFEGSSPTEAWSEILERVNEARKQS----G--------L---------------------LKLPPNSISGP--- 54 (86)
T ss_dssp TT-GGG-EEESSHHHHHHHHHHHHHHHHT----------------------------------------TT----HH---
T ss_pred CCCCCCEEEeCCHHHHHHHHHHHHHHHHhhc----c--------c---------------------cccCCCCCCHh---
Confidence 3356799999999999999998887744321 1 0 00011112232
Q ss_pred ccccccchhHHHHHHHHHHhhccCccccCHHHHHHHHHhCccccccccchhh
Q 000283 136 PHLIRSNDELETSCKALVKWLDQDRFGLDVEFVQEIVEQLPRVRVCAEYTFL 187 (1724)
Q Consensus 136 p~~~~~~~~~~~~~~~l~~wl~qdr~g~d~~fvqe~~e~lp~~~~c~~y~~l 187 (1724)
+-|||...-|+.+||+|||++.|++|+|=
T Consensus 55 -----------------------~~FGls~p~V~~lie~Lp~a~~c~~Y~f~ 83 (86)
T PF05965_consen 55 -----------------------EMFGLSNPAVQRLIESLPGADKCSNYKFR 83 (86)
T ss_dssp -----------------------HHHSTTSHHHHHHHTTSTTGGG-TT----
T ss_pred -----------------------HhcCCCCHHHHHHHHhCCCcchhhcCCcc
Confidence 56999999999999999999999999774
No 62
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.74 E-value=0.00099 Score=83.66 Aligned_cols=51 Identities=31% Similarity=0.904 Sum_probs=44.8
Q ss_pred cccccccccCCC--CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCCCC
Q 000283 750 DEGVCKVCGIDK--DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGN 802 (1724)
Q Consensus 750 ~d~~C~VCg~~~--d~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~~ 802 (1724)
++.+|.+|...+ ...+|++||.|...-|+.|+. +.++|.|.|.|..|..+.
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg~ 322 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALGI 322 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhccccC
Confidence 456899997653 478999999999999999999 899999999999997763
No 63
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.66 E-value=0.00074 Score=76.80 Aligned_cols=44 Identities=34% Similarity=0.968 Sum_probs=36.8
Q ss_pred ccccccCCCCCCCeEEecC--CC-CCCcccccCCCCCCCCCCCccCccCCC
Q 000283 753 VCKVCGIDKDDDNVLLCDT--CD-SGYHTYCLTPPLTRVPEGNWYCPPCLS 800 (1724)
Q Consensus 753 ~C~VCg~~~d~~~LLlCD~--Cd-~~YHl~CL~PPL~~VP~GdW~Cp~C~~ 800 (1724)
+|. |++ ..-|+|+-||. |. -+||+.|.+ |...|+|.|||+.|..
T Consensus 223 YCf-Cqq-vSyGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~ 269 (271)
T COG5034 223 YCF-CQQ-VSYGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKK 269 (271)
T ss_pred EEE-ecc-cccccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHh
Confidence 563 443 46789999995 88 599999999 9999999999999964
No 64
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.23 E-value=0.0018 Score=79.16 Aligned_cols=52 Identities=33% Similarity=0.760 Sum_probs=41.0
Q ss_pred ccccccC--CCCCCCeEEecCCCCCCcccccCCCCCCC----CCCCccCccCCCCCcC
Q 000283 753 VCKVCGI--DKDDDNVLLCDTCDSGYHTYCLTPPLTRV----PEGNWYCPPCLSGNCK 804 (1724)
Q Consensus 753 ~C~VCg~--~~d~~~LLlCD~Cd~~YHl~CL~PPL~~V----P~GdW~Cp~C~~~~~~ 804 (1724)
.|.+|+. .....+||.|+.|..+||..|..|+.+.. |...|||..|..+...
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~ 227 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKK 227 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhh
Confidence 4777754 34566999999999999999999987654 4457999999877543
No 65
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.17 E-value=0.0021 Score=77.85 Aligned_cols=51 Identities=27% Similarity=0.856 Sum_probs=43.4
Q ss_pred cccccccccCCC--CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCCCC
Q 000283 750 DEGVCKVCGIDK--DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGN 802 (1724)
Q Consensus 750 ~d~~C~VCg~~~--d~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~~ 802 (1724)
-|+.|.+|...+ +.+.+++||+|+-.-|..|.+ +.-+|+|.|+|..|+.+.
T Consensus 192 ~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~~ 244 (669)
T COG5141 192 FDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYGE 244 (669)
T ss_pred hhhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcccc
Confidence 367899997644 356789999999999999999 679999999999998764
No 66
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=95.92 E-value=0.0061 Score=52.06 Aligned_cols=17 Identities=47% Similarity=0.925 Sum_probs=15.7
Q ss_pred hhhhcCCCCCCCeeeEe
Q 000283 1141 RKELLGRDSAGRLYWAF 1157 (1724)
Q Consensus 1141 RREfLG~Ds~GrlYW~~ 1157 (1724)
|.+.||+|++|++||||
T Consensus 1 R~~pLG~DR~~NrYwwf 17 (38)
T PF15613_consen 1 RLKPLGKDRYGNRYWWF 17 (38)
T ss_pred CcccccccCCCceEEEE
Confidence 56789999999999999
No 67
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.79 E-value=0.0039 Score=78.05 Aligned_cols=49 Identities=31% Similarity=0.871 Sum_probs=40.8
Q ss_pred ccccccCCC--CCCCeEEecC--CCCCCcccccCCCCCCCCCCCccCccCCCCCc
Q 000283 753 VCKVCGIDK--DDDNVLLCDT--CDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNC 803 (1724)
Q Consensus 753 ~C~VCg~~~--d~~~LLlCD~--Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~~~ 803 (1724)
=|.||.... .+..|+.||+ |.-+.|..|+. +.+||.|.|||..|-...+
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesqer 59 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQER 59 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhhhh
Confidence 488896443 3678999995 99999999999 8899999999999965543
No 68
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=95.78 E-value=0.0085 Score=52.73 Aligned_cols=44 Identities=34% Similarity=0.707 Sum_probs=37.0
Q ss_pred hhhhhhhcccccCChhHHHHHHHHHHHHhhccchhhHHhhhhhc
Q 000283 838 LAATMEMRDYWDYSDKERIFLLKFLCDELLNSTNIREHLERCAS 881 (1724)
Q Consensus 838 La~d~iEKEFWeLSv~ERIkLLKfLcDEaLsSa~IRehLeqced 881 (1724)
+...+....||.|++.+|+.+|++||+.++++..||++++++.+
T Consensus 5 ~~~~l~~~~y~~L~~~~kl~iL~~L~~~~l~s~~vr~~i~~~~e 48 (50)
T PF15612_consen 5 LAPPLETGEYYELSPEEKLEILRALCDQLLSSSSVRNEIEEREE 48 (50)
T ss_dssp G-CCCCCSTCCCS-HHHHHHHHHHHHHHHCC-CCHHHHHHHHHT
T ss_pred hhHHHHcCCcccCCHHHHHHHHHHHHHHHcCcHHHHHHHHHhhc
Confidence 34556778999999999999999999999999999999998865
No 69
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.63 E-value=0.013 Score=77.78 Aligned_cols=100 Identities=21% Similarity=0.300 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHH
Q 000283 599 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 678 (1724)
Q Consensus 599 ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVW 678 (1724)
..+-++.+|..+...+....|..|||. .-++||.++|+.||||.|+..++.+|.|. ..+.|-+|+.++-
T Consensus 566 ~~kLl~~~l~~lq~kD~~gif~~pvd~----------~e~pdy~~iik~pmd~~t~~~kl~s~~y~-tle~ieed~~l~~ 634 (1051)
T KOG0955|consen 566 FKKLLQKSLDKLQKKDSYGIFAEPVDP----------SELPDYIDIIKKPMDFFTMRLKLESGAYS-TLEPIEEDVNLIV 634 (1051)
T ss_pred HHHHHHHHHHHhhcccccCceeeccCh----------hhcccHHHHhcCccchhhhhhhccccchh-hhhHHHHhHhHhH
Confidence 357888999999999999999999976 34678999999999999999999999999 6777999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHHHHHHh
Q 000283 679 HHICTAYSDQSDLLQLAGKLCQNFEVLYKKE 709 (1724)
Q Consensus 679 sN~~tyN~dgSEVv~LAekLSqiFEsrYkKq 709 (1724)
.||+.||..+-.....|..+.+-....+.+.
T Consensus 635 ~nc~~yn~~dtv~~r~av~~~e~~~~~~~~a 665 (1051)
T KOG0955|consen 635 SNCMEYNAKDTVYYRAAVRLRELIKKDFRNA 665 (1051)
T ss_pred hHHHHhhccCeehHhhhHHHHhhhhhHHHhc
Confidence 9999999988888888888877666555543
No 70
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=95.56 E-value=0.0083 Score=78.39 Aligned_cols=49 Identities=31% Similarity=0.717 Sum_probs=44.5
Q ss_pred ccccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCCCC
Q 000283 751 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGN 802 (1724)
Q Consensus 751 d~~C~VCg~~~d~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~~ 802 (1724)
++.|++|. +.+.++||..|++.||+.|..||+..+|+..|-|--|...+
T Consensus 344 ddhcrf~~---d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hk 392 (1414)
T KOG1473|consen 344 DDHCRFCH---DLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHK 392 (1414)
T ss_pred cccccccC---cccceeecccCCceEEeeecCCccccCCCccchhhhhhhhc
Confidence 46799994 78999999999999999999999999999999999997543
No 71
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=95.20 E-value=0.039 Score=72.57 Aligned_cols=109 Identities=34% Similarity=0.500 Sum_probs=78.2
Q ss_pred CCCCCCcc---ccCChhhhhhHHHHHHHHHHhHhhcCCCCCCCHHHHHHHHccCCCccccCCCCccccccccccchhhhh
Q 000283 242 FPPGKPLS---SKLPIELIGDVIQSWELLWRFSEVLGLEEPLSFKELEEELRNGSAFTLRSSSTSTVAQEIGQAFIAEEM 318 (1724)
Q Consensus 242 ~p~g~~~~---~~~p~~lvgd~lq~we~l~rf~eilgl~e~~s~eele~el~~~~~~~~~~~~~~~v~~~~~~~~~~~e~ 318 (1724)
||.-=|=| +-||.+-|=|+|-|.|+|.+|+-.|-|. ||.||.+=--|+.
T Consensus 174 PpleLP~SSedi~IPne~Vm~alsIYevLRsF~~~Lris-PF~feDFcaAL~~--------------------------- 225 (1414)
T KOG1473|consen 174 PPLELPESSEDIGIPNEHVMDALSIYEVLRSFSRQLRIS-PFRFEDFCAALIS--------------------------- 225 (1414)
T ss_pred CCccCCCcccccCCcHHHHHHHHHHHHHHHhhcceEEeC-CccHHHHHHHHHh---------------------------
Confidence 55444444 3599999999999999999999999996 6999988665554
Q ss_pred hhHHHHHHHhhccccccCcccchhhhhHHHHHHHHHHHHhhhhhhccCCCCCCcchhhhhhcchhhchhhhhhhccCCcc
Q 000283 319 ESLREAAHVRLASNTSSGHANVGLANVLCSLLILLLGELQSKVAVLGDTSFDGTESKSRRRRKKDAENLMFAKKIMLDLL 398 (1724)
Q Consensus 319 ~~~~e~~~~~~a~~t~~~~~~v~l~~~h~~ll~~l~~el~~kva~~~dpn~d~~e~~~rrgrk~~~d~~~~~~~~~~~~l 398 (1724)
+ +.| -.|++||.+|||-|++|+-.-= ..|-.-++| |.=| ++.-
T Consensus 226 -------------~--~~s--sLlaeVHvaLLrA~lr~eD~~~-----Thfs~~d~K-------dsvn--------I~l~ 268 (1414)
T KOG1473|consen 226 -------------H--EQS--SLLAEVHVALLRALLREEDRLS-----THFSPLDSK-------DSVN--------IDLY 268 (1414)
T ss_pred -------------c--Cch--hHHHHHHHHHHHHHhhhhhhcc-----cccCccccc-------ccee--------eeee
Confidence 1 222 3799999999999999986432 233333332 2111 2233
Q ss_pred ccCcCChHHHHHHhhhe
Q 000283 399 PVNVLTWPELARRYLLT 415 (1724)
Q Consensus 399 pin~ltwpelarry~l~ 415 (1724)
=|..|||||..|-|+-+
T Consensus 269 liD~lTWPevLrqY~ea 285 (1414)
T KOG1473|consen 269 LIDTLTWPEVLRQYFEA 285 (1414)
T ss_pred hhccccHHHHHHHHHHh
Confidence 46789999999999854
No 72
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=93.79 E-value=0.019 Score=73.60 Aligned_cols=84 Identities=19% Similarity=0.272 Sum_probs=69.1
Q ss_pred HhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCch
Q 000283 611 AAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSD 690 (1724)
Q Consensus 611 l~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN~~tyN~dgSE 690 (1724)
-.+..+|.|..||+...++ ++.|+.+|.+|||.++|..+|.+ .|.........|...+|.||+.++...-+
T Consensus 5 ~~~~~~~~f~~~v~~v~l~--------~~~~~~~~~~~~d~~~~~~~~e~-n~~~~~~~~~~~f~~~~sn~~~~~~~~~~ 75 (640)
T KOG1474|consen 5 RKHKLAWPFLEPVDAVALN--------LPAYYEIIKRPMDIGTIEKRVEN-NYYFSASECIADFKTKFSNCYLFNDSGDD 75 (640)
T ss_pred ccccccccccCccchhhcc--------chhhhcccCCCCCchhhhhhhcc-CccccHhhhhhhccccccchhcccCCccc
Confidence 3566778999999876655 45599999999999999999999 55556666778888899999999988888
Q ss_pred HHHHHHHhhhhhH
Q 000283 691 LLQLAGKLCQNFE 703 (1724)
Q Consensus 691 Vv~LAekLSqiFE 703 (1724)
|..++..+...|.
T Consensus 76 v~~~~~~~~~~~~ 88 (640)
T KOG1474|consen 76 VVRMKQSLEKLFP 88 (640)
T ss_pred hhhccccchhhcc
Confidence 9988888877664
No 73
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=93.54 E-value=0.015 Score=48.92 Aligned_cols=34 Identities=35% Similarity=1.091 Sum_probs=20.7
Q ss_pred CCeEEecCCCCCCcccccCCCCCCCCCC-CccCccCC
Q 000283 764 DNVLLCDTCDSGYHTYCLTPPLTRVPEG-NWYCPPCL 799 (1724)
Q Consensus 764 ~~LLlCD~Cd~~YHl~CL~PPL~~VP~G-dW~Cp~C~ 799 (1724)
+.||.|+.|.-..|..|.. +..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 5789999999999999999 6788887 89999883
No 74
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=93.07 E-value=0.095 Score=70.34 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=77.3
Q ss_pred HHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHhhhh
Q 000283 604 RKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICT 683 (1724)
Q Consensus 604 r~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN~~t 683 (1724)
..+.+.+.+..+.-+|.+||+.. -+.+|+.||.+|||+.+++..+....|. .-+.|++|+.++++|-..
T Consensus 1267 ~~i~n~~~~~~~t~~f~~Pv~~k----------~v~dyy~vi~~P~~lq~~kk~v~kr~y~-~r~~fle~~~~~~~ns~~ 1335 (1563)
T KOG0008|consen 1267 ETIINQARSSPNTYPFPTPVNAK----------EVKDYYRVITPPMDLQTQKKLVRKRLYE-SREHFLEELPLIVSNSTK 1335 (1563)
T ss_pred HHHHHHHhcCCCCcCCCCccchh----------hccchhhccCCCcchHHHHHHHHHHHHH-HHHHHHHHhHHHhhchhh
Confidence 45778899999999999998763 3457999999999999999999999998 566699999999999999
Q ss_pred hcCCCchHHHHHH-HhhhhhHHHHHH
Q 000283 684 AYSDQSDLLQLAG-KLCQNFEVLYKK 708 (1724)
Q Consensus 684 yN~dgSEVv~LAe-kLSqiFEsrYkK 708 (1724)
||++.+.....+. .|+..|+.+-.+
T Consensus 1336 yng~~~~~t~~~q~mls~~~~~~~ek 1361 (1563)
T KOG0008|consen 1336 YNGPLASLTRQQQSMLSLCFEKLKEK 1361 (1563)
T ss_pred hcCchHHHHHHHHHHHHHHHHhhchh
Confidence 9998887766665 344466655444
No 75
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=91.76 E-value=0.15 Score=68.53 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=62.2
Q ss_pred HHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHhhhhhc
Q 000283 606 VLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAY 685 (1724)
Q Consensus 606 VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN~~tyN 685 (1724)
++..|..-+.+|+|++||+... +++|+.+|++||||.+|........|.+ ...|+.||.++..|+..||
T Consensus 1390 ~vs~~~~ipes~~f~~~v~~k~----------~~~yy~kik~pmdl~~i~~n~~~~~y~s-~~e~l~dv~~i~~n~~~~n 1458 (1563)
T KOG0008|consen 1390 IVSQMKEIPESWPFHEPVNKKR----------VPDYYKKIKNPMDLETILKNIPPHKYDS-RSEFLDDVNLIYVNSVEYN 1458 (1563)
T ss_pred HHHHHHhcchhcccccccchhh----------chHHHHHhcChhhHHHHhhcCCcccccc-HHHHhhhhHhhcccceeec
Confidence 3444557789999999998743 4569999999999999999999999995 4779999999999999999
Q ss_pred CCCc
Q 000283 686 SDQS 689 (1724)
Q Consensus 686 ~dgS 689 (1724)
+...
T Consensus 1459 g~e~ 1462 (1563)
T KOG0008|consen 1459 GAES 1462 (1563)
T ss_pred Cccc
Confidence 8655
No 76
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=89.61 E-value=0.43 Score=61.92 Aligned_cols=75 Identities=20% Similarity=0.395 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHH
Q 000283 597 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 676 (1724)
Q Consensus 597 d~ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRL 676 (1724)
+.+...|. ....+++|.++|+. ..-+.|+.|++-|||+.++..++..+-|. ..+.|+.|+.+
T Consensus 292 ~~~~~~~~-------~~~~s~~~~~kvs~----------~~a~~y~~i~k~pmdl~t~~~k~~~~~y~-~~~~fv~d~~~ 353 (720)
T KOG1472|consen 292 EELYEAAE-------RTEHSTPFLEKVSK----------EDAPNYYQIIKAPMDLSTELKKLKSGPYC-SKEEFVNDLML 353 (720)
T ss_pred HHHHHHhc-------ccccccccccCCCh----------hhCcchHHhhhcchHHHHHHHHhcccccc-chhHHHHHHHH
Confidence 44456665 37889999999976 34567999999999999999999999998 67779999999
Q ss_pred HHHhhhhhcCCCc
Q 000283 677 VWHHICTAYSDQS 689 (1724)
Q Consensus 677 VWsN~~tyN~dgS 689 (1724)
+|+||..||.+..
T Consensus 354 ~~~n~~~~n~ee~ 366 (720)
T KOG1472|consen 354 IWRNCEKYNSEES 366 (720)
T ss_pred HHhcchhhccccc
Confidence 9999999998654
No 77
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=87.75 E-value=0.61 Score=59.77 Aligned_cols=103 Identities=13% Similarity=0.154 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHH
Q 000283 600 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 679 (1724)
Q Consensus 600 mKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWs 679 (1724)
..+-..||+.++...... ++.+...+-.+.+ ....++|+.+|..||-|.-|+.|+..+.|. ..+-|..|+.+++.
T Consensus 54 ~~~f~~il~~~~~~~d~~--gk~~~d~feklp~--~~~~p~yy~~i~~pisl~~ik~kv~k~~y~-~~~~f~~D~~lm~e 128 (629)
T KOG1827|consen 54 IPKFKTILASLLDLKDDE--GKQLFDKFEKLPS--RKEFPEYYYVIQQPISLDQIKRKVKKGRYK-RLSFFQLDFLLMTE 128 (629)
T ss_pred HHHHHHHHHHHHhhcccc--CcccchhHhhccc--cccCCCcceeecCcccHHHHHHHHHhcccc-cHHHHHHHHHHHHH
Confidence 566666777776221111 1111222222222 334567999999999999999999999999 67779999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhhhhHHHHH
Q 000283 680 HICTAYSDQSDLLQLAGKLCQNFEVLYK 707 (1724)
Q Consensus 680 N~~tyN~dgSEVv~LAekLSqiFEsrYk 707 (1724)
|+..|+..++.+..++..|...|.++-.
T Consensus 129 na~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 129 NARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 9999999999999999999988887554
No 78
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=82.62 E-value=0.89 Score=56.44 Aligned_cols=52 Identities=33% Similarity=0.771 Sum_probs=40.6
Q ss_pred cccccccCC--CCCCCeEEecCCCCCCcccccCCC-CCCCCCC-------CccCccCCCCCc
Q 000283 752 GVCKVCGID--KDDDNVLLCDTCDSGYHTYCLTPP-LTRVPEG-------NWYCPPCLSGNC 803 (1724)
Q Consensus 752 ~~C~VCg~~--~d~~~LLlCD~Cd~~YHl~CL~PP-L~~VP~G-------dW~Cp~C~~~~~ 803 (1724)
.+|.||-.. .+.+++|.||.|+-..|-.|++-- -..||.| .|||..|.++..
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs 181 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVS 181 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCC
Confidence 489999544 478899999999999999998843 1345554 599999988754
No 79
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=74.61 E-value=4.2 Score=54.64 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHh
Q 000283 601 KQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHH 680 (1724)
Q Consensus 601 KrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN 680 (1724)
+.|.+|+........+ -..++...++.+ +-..-+++|+.+|++|+++..|+.++..+.|. ....--.|+-.+|.|
T Consensus 1027 ~~~~~i~~~~~~~~~~--~~r~~~~~~~~~--~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~n 1101 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDS--AGRELSEVFLKL--PSRKEYPDYYEIIKKPVAIDKIKKRIENHKYN-SLKELEKDFMLLFNN 1101 (1157)
T ss_pred HHHHHHHHHHHhcccc--cccccchhcccC--cccccccchHHHhcchhhHHHHhhhccccccc-hHHHHHHHHHhhcch
Confidence 4588888777743332 111222212221 12345678999999999999999999999999 566677899999999
Q ss_pred hhhhcCCCchHHHHHHHhhhhhHHHHHHhhh
Q 000283 681 ICTAYSDQSDLLQLAGKLCQNFEVLYKKEVL 711 (1724)
Q Consensus 681 ~~tyN~dgSEVv~LAekLSqiFEsrYkKqVL 711 (1724)
..+||..++.|..-|..|...|...+.+.-.
T Consensus 1102 a~~~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1102 ARTYNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hhhhccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999998888776543
No 80
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=73.13 E-value=1.7 Score=48.04 Aligned_cols=51 Identities=31% Similarity=0.808 Sum_probs=38.6
Q ss_pred ccccc---cCCCCCCCeEEecCCCCCCcccccCCCC------CCCCCCC--ccCccCCCCCc
Q 000283 753 VCKVC---GIDKDDDNVLLCDTCDSGYHTYCLTPPL------TRVPEGN--WYCPPCLSGNC 803 (1724)
Q Consensus 753 ~C~VC---g~~~d~~~LLlCD~Cd~~YHl~CL~PPL------~~VP~Gd--W~Cp~C~~~~~ 803 (1724)
+|.+| +.+..-+.|+.|-+|-.+||..||.|-- ++|-.++ -.|..|+--..
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~ 62 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAH 62 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhh
Confidence 37777 5556788999999999999999999864 4454443 67999975543
No 81
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=69.14 E-value=1.9 Score=52.61 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=75.0
Q ss_pred HHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHhhhh
Q 000283 604 RKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICT 683 (1724)
Q Consensus 604 r~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN~~t 683 (1724)
.++++.+.+.+.-..|--||-..+ -++|.++|.+|||+.|+..+.+-++|-. ...|-.|.+++-.|...
T Consensus 25 ehhlrkl~sKdp~q~fafplt~~m----------ap~y~~iis~Pmd~~t~r~kidd~~yl~-L~~m~~d~kl~~~na~~ 93 (418)
T KOG1828|consen 25 EHHLRKLPSKDPKQKFAFPLTDKM----------APNYLEIISEPMDRITKRSKIDDTRYLV-LSQMEFDRKLPDGNATL 93 (418)
T ss_pred HHHHHhccccChhhhhccccchhh----------ccchHhhhhcccccccccccCCCcccee-chhhhhhhcccccchhh
Confidence 356666677777677777764422 2479999999999999999999999995 44489999999999999
Q ss_pred hcCCCchHHHHHHHhhhhhHHHHHHhhhhhh
Q 000283 684 AYSDQSDLLQLAGKLCQNFEVLYKKEVLTLV 714 (1724)
Q Consensus 684 yN~dgSEVv~LAekLSqiFEsrYkKqVL~~v 714 (1724)
||...-.+...|..|+...-..+...++.+.
T Consensus 94 yn~~~Tv~~~aaKrL~~v~~~~~qe~~l~f~ 124 (418)
T KOG1828|consen 94 YNLHPTVPIVAAKRLCPVRLGMTQERLLSFV 124 (418)
T ss_pred hhcCCccccccccccchhhcchhhHHHHHhh
Confidence 9988776666677777755555555555443
No 82
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.02 E-value=2.6 Score=39.14 Aligned_cols=32 Identities=34% Similarity=0.884 Sum_probs=27.8
Q ss_pred cccccccCCC-CCCCeEEecCCCCCCcccccCC
Q 000283 752 GVCKVCGIDK-DDDNVLLCDTCDSGYHTYCLTP 783 (1724)
Q Consensus 752 ~~C~VCg~~~-d~~~LLlCD~Cd~~YHl~CL~P 783 (1724)
..|.+|+..- +.++++.|..|...||-.|+..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4799998765 4889999999999999999863
No 83
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=67.63 E-value=4.3 Score=45.80 Aligned_cols=41 Identities=29% Similarity=0.788 Sum_probs=32.1
Q ss_pred cccccccCCC-----CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCCC
Q 000283 752 GVCKVCGIDK-----DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 801 (1724)
Q Consensus 752 ~~C~VCg~~~-----d~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~ 801 (1724)
.+|.+|...+ +.+....|..|...||..|... =.||.|...
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R~ 198 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCARR 198 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHhH
Confidence 3799997653 3457889999999999999882 139999754
No 84
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=65.51 E-value=2 Score=55.23 Aligned_cols=50 Identities=32% Similarity=0.848 Sum_probs=36.8
Q ss_pred ccccccccCCC--CCCCeEEecCCCCCCcccccCCCCCCC-CCCCccCccCCC
Q 000283 751 EGVCKVCGIDK--DDDNVLLCDTCDSGYHTYCLTPPLTRV-PEGNWYCPPCLS 800 (1724)
Q Consensus 751 d~~C~VCg~~~--d~~~LLlCD~Cd~~YHl~CL~PPL~~V-P~GdW~Cp~C~~ 800 (1724)
+..|.+|+... .++.|+-|..|...||.+|+.--+... -.+-|.||.|+.
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 34688886543 578899999999999999988444333 223499999953
No 85
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=63.48 E-value=3.2 Score=48.94 Aligned_cols=54 Identities=19% Similarity=0.388 Sum_probs=38.6
Q ss_pred cccccccCC------CCCCCeEEecCCCCCCcccccCCCCC---CCCCCCccCccCC-CCCcCC
Q 000283 752 GVCKVCGID------KDDDNVLLCDTCDSGYHTYCLTPPLT---RVPEGNWYCPPCL-SGNCKN 805 (1724)
Q Consensus 752 ~~C~VCg~~------~d~~~LLlCD~Cd~~YHl~CL~PPL~---~VP~GdW~Cp~C~-~~~~~~ 805 (1724)
..|.+|... ...+.+++|..|...||.+|+.-+.. .+-...|.|..|. +..+..
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~ 322 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLG 322 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCC
Confidence 468888543 24678999999999999999885432 2334589999993 344443
No 86
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=54.47 E-value=5.4 Score=31.26 Aligned_cols=24 Identities=38% Similarity=0.785 Sum_probs=21.3
Q ss_pred ccchhhhccccccccccccccCcc
Q 000283 1328 RFHCRRCHLSFSARNELEEHNDAK 1351 (1724)
Q Consensus 1328 r~hc~~ch~t~~~~~e~e~h~~~k 1351 (1724)
++.|..|-+.|.+...|+.|..+|
T Consensus 1 q~~C~~C~k~f~~~~~~~~H~~sk 24 (27)
T PF12171_consen 1 QFYCDACDKYFSSENQLKQHMKSK 24 (27)
T ss_dssp -CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred CCCcccCCCCcCCHHHHHHHHccC
Confidence 368999999999999999998874
No 87
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=52.55 E-value=1.9 Score=41.11 Aligned_cols=50 Identities=24% Similarity=0.489 Sum_probs=19.7
Q ss_pred cccccccCCCC-C--CCeEEec--CCCCCCcccccCCCCCCCCCC-------CccCccCCCC
Q 000283 752 GVCKVCGIDKD-D--DNVLLCD--TCDSGYHTYCLTPPLTRVPEG-------NWYCPPCLSG 801 (1724)
Q Consensus 752 ~~C~VCg~~~d-~--~~LLlCD--~Cd~~YHl~CL~PPL~~VP~G-------dW~Cp~C~~~ 801 (1724)
..|.+|..... . ...+.|+ .|...||+.||.-=+...+.+ .+-||.|...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 45889976533 2 3458898 999999999986322221111 3569998754
No 88
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=51.84 E-value=10 Score=46.75 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=54.0
Q ss_pred CCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCchHHHHHHHhhh
Q 000283 638 LLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQ 700 (1724)
Q Consensus 638 LpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN~~tyN~dgSEVv~LAekLSq 700 (1724)
.++|.-+|+.|+|++|++-+..+.+|. + -.|..|-.++-.|+.+|+.+......||.++..
T Consensus 238 aP~YSm~Ik~~~~~~Tygdk~~andy~-S-~~f~~D~kl~~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 238 APGYSMTITEVEPPGTYGDKSSANDYE-S-LSFTQDRKLIALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred cccccccccccCCCcchhhhhhhhhhh-h-hhhhcccchhhHHHHhcCCcchHHHHHHHhhhh
Confidence 467877899999999999999999998 4 559999999999999999998888888887776
No 89
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=49.34 E-value=4 Score=30.98 Aligned_cols=23 Identities=43% Similarity=0.785 Sum_probs=20.7
Q ss_pred cchhhhccccccccccccccCcc
Q 000283 1329 FHCRRCHLSFSARNELEEHNDAK 1351 (1724)
Q Consensus 1329 ~hc~~ch~t~~~~~e~e~h~~~k 1351 (1724)
+.|..|..+|.+...|+.|..|+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 47999999999999999998774
No 90
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=45.94 E-value=3.7 Score=53.83 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=42.7
Q ss_pred cccccccccCCCCCCCeEEecCCCCCCcccccCC-CCCCCCCCCccCccCCCC
Q 000283 750 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTP-PLTRVPEGNWYCPPCLSG 801 (1724)
Q Consensus 750 ~d~~C~VCg~~~d~~~LLlCD~Cd~~YHl~CL~P-PL~~VP~GdW~Cp~C~~~ 801 (1724)
.+..|..|. .....++|+.|-+.||..|+.| |+...+.|.|-|+.|..+
T Consensus 505 ~d~~~~~~~---~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~ 554 (696)
T KOG0383|consen 505 HDISCEEQI---KKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKK 554 (696)
T ss_pred chhhHHHHH---HhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHH
Confidence 456788885 5667789999999999999999 999999999999999654
No 91
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=42.28 E-value=15 Score=47.54 Aligned_cols=48 Identities=31% Similarity=0.782 Sum_probs=38.2
Q ss_pred cccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCC-CCCccCccCCCCC
Q 000283 752 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVP-EGNWYCPPCLSGN 802 (1724)
Q Consensus 752 ~~C~VCg~~~d~~~LLlCD~Cd~~YHl~CL~PPL~~VP-~GdW~Cp~C~~~~ 802 (1724)
..|.+|. ..+.+++|+.|+..||..|-.|++...- .+.|.|..|..+.
T Consensus 48 ts~~~~~---~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~~ 96 (613)
T KOG4299|consen 48 TSCGICK---SGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPKGR 96 (613)
T ss_pred hhcchhh---hcCCccccccCccccchhccCcccCcccccccccccCCCccc
Confidence 4577774 6788999999999999999999987332 3479999987653
No 92
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=39.00 E-value=13 Score=37.45 Aligned_cols=46 Identities=24% Similarity=0.552 Sum_probs=29.2
Q ss_pred cccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCCC
Q 000283 754 CKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 801 (1724)
Q Consensus 754 C~VCg~~~d~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~ 801 (1724)
|..|....+.-.++++ .|...||+.|+.--|..-. ..=.||-|+..
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~-~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQS-SKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHcccc-CCCCCCCcCCe
Confidence 4444433344455544 4999999999886665532 23389999864
No 93
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.00 E-value=29 Score=42.66 Aligned_cols=53 Identities=25% Similarity=0.561 Sum_probs=40.3
Q ss_pred cccccccCCCCCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCCCCcCCCC
Q 000283 752 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCKNKY 807 (1724)
Q Consensus 752 ~~C~VCg~~~d~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~~~~~~g 807 (1724)
+.|.+|..+-..++.|-==-|...||..|.+|=|.+- .=+||-|........+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDIRTDSG 282 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcCCCCCC
Confidence 4799998766666666557899999999999887654 2389999887655433
No 94
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.98 E-value=12 Score=44.21 Aligned_cols=61 Identities=25% Similarity=0.490 Sum_probs=37.9
Q ss_pred hccCCCCCCccccccccccCCCCCCC-------eEEecCCCCCCcccccCCCCCCCCCCCccCccCCCCC
Q 000283 740 SASEIPKAPWDEGVCKVCGIDKDDDN-------VLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGN 802 (1724)
Q Consensus 740 s~s~lP~~pw~d~~C~VCg~~~d~~~-------LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~~ 802 (1724)
+.+.+|...-++.+|.+|++.-+.+. -+.==.|...||-+|.+-= -+--..=.||.|..+.
T Consensus 213 s~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGW--civGKkqtCPYCKekV 280 (328)
T KOG1734|consen 213 SPSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGW--CIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhh--eeecCCCCCchHHHHh
Confidence 35677877788899999987543222 1122268999999997610 0000123788887654
No 95
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=33.61 E-value=51 Score=35.74 Aligned_cols=44 Identities=23% Similarity=0.401 Sum_probs=35.8
Q ss_pred CCChhHHHhhhcccccCCChhhhHhhHHHHHHhhhhhcCCCchHH
Q 000283 648 PLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLL 692 (1724)
Q Consensus 648 PMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsN~~tyN~dgSEVv 692 (1724)
|.||..|+++|..|.|. +...|.+||-.+.......-+..+++.
T Consensus 59 p~dL~~V~kkl~~G~Y~-sv~~F~~DvvkIiqa~l~~e~~~pe~~ 102 (131)
T cd05493 59 PLDLEAVGKKLEAGFYT-SVLDFSDDIVKIIQAALNSEGGQPEIK 102 (131)
T ss_pred cccHHHHHHHHhcccee-hHHHHHHHHHHHHHHHHhhccCCcccc
Confidence 79999999999999999 666799999999877775555555443
No 96
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=31.49 E-value=22 Score=42.02 Aligned_cols=47 Identities=28% Similarity=0.726 Sum_probs=23.2
Q ss_pred CCCCccccccccccCCC-------C---CCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCCCCc
Q 000283 745 PKAPWDEGVCKVCGIDK-------D---DDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNC 803 (1724)
Q Consensus 745 P~~pw~d~~C~VCg~~~-------d---~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~~~ 803 (1724)
+...|..+.|.|||... . +...+.|..|...||.. ...||.|-....
T Consensus 166 ~~~~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~------------R~~Cp~Cg~~~~ 222 (290)
T PF04216_consen 166 PPEGWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV------------RIKCPYCGNTDH 222 (290)
T ss_dssp S---TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--------------TTS-TTT---SS
T ss_pred ccCCccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec------------CCCCcCCCCCCC
Confidence 34678889999998752 1 34889999999999954 246999966543
No 97
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=30.81 E-value=27 Score=35.34 Aligned_cols=29 Identities=24% Similarity=0.813 Sum_probs=24.8
Q ss_pred cccccccCCCCCCCeEEecC--CCCCCcccccC
Q 000283 752 GVCKVCGIDKDDDNVLLCDT--CDSGYHTYCLT 782 (1724)
Q Consensus 752 ~~C~VCg~~~d~~~LLlCD~--Cd~~YHl~CL~ 782 (1724)
..|.+|++. .|..+.|.. |...||..|..
T Consensus 56 ~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 56 LKCSICGKS--GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CcCcCCCCC--CceeEEcCCCCCCcCCCHHHHH
Confidence 479999853 788999987 99999999965
No 98
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=30.81 E-value=3.9 Score=35.06 Aligned_cols=42 Identities=26% Similarity=0.610 Sum_probs=28.1
Q ss_pred ccccccCCCC-CCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCC
Q 000283 753 VCKVCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCL 799 (1724)
Q Consensus 753 ~C~VCg~~~d-~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~ 799 (1724)
.|.+|...-. ++.++... |...||..|+..-+..- -.||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 5889976554 34444444 99999999988655442 2788874
No 99
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=29.86 E-value=43 Score=42.29 Aligned_cols=49 Identities=18% Similarity=0.435 Sum_probs=32.1
Q ss_pred ccccccCCC---CCCCeEEecCCCCCCcccccCCC--------CCC---CCCCCccCccCCCC
Q 000283 753 VCKVCGIDK---DDDNVLLCDTCDSGYHTYCLTPP--------LTR---VPEGNWYCPPCLSG 801 (1724)
Q Consensus 753 ~C~VCg~~~---d~~~LLlCD~Cd~~YHl~CL~PP--------L~~---VP~GdW~Cp~C~~~ 801 (1724)
.|.+|++.+ ++-..+-||.|..+-|+.|-.-- ... ..++..+|..|-..
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCCh
Confidence 467787754 45567899999999999994311 111 12346777777543
No 100
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=28.60 E-value=44 Score=40.55 Aligned_cols=41 Identities=27% Similarity=0.568 Sum_probs=31.5
Q ss_pred CccccccccccCCC----------CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCC
Q 000283 748 PWDEGVCKVCGIDK----------DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLS 800 (1724)
Q Consensus 748 pw~d~~C~VCg~~~----------d~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~ 800 (1724)
.|....|.|||... ++...+.|..|...||+.= =.|+.|-.
T Consensus 184 ~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R------------~~C~~Cg~ 234 (309)
T PRK03564 184 GEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVR------------VKCSNCEQ 234 (309)
T ss_pred ccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccC------------ccCCCCCC
Confidence 35678999998762 3557899999999999652 26888864
No 101
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=28.41 E-value=53 Score=39.83 Aligned_cols=42 Identities=21% Similarity=0.497 Sum_probs=31.7
Q ss_pred CccccccccccCCC-----------CCCCeEEecCCCCCCcccccCCCCCCCCCCCccCccCCCC
Q 000283 748 PWDEGVCKVCGIDK-----------DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 801 (1724)
Q Consensus 748 pw~d~~C~VCg~~~-----------d~~~LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~ 801 (1724)
.|+...|.|||... ++...+.|..|...||+.= =.|+.|-..
T Consensus 181 ~~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R------------~~C~~Cg~~ 233 (305)
T TIGR01562 181 RESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVR------------VKCSHCEES 233 (305)
T ss_pred cCCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccC------------ccCCCCCCC
Confidence 35667999998752 3457899999999999652 269999654
No 102
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=28.38 E-value=31 Score=31.35 Aligned_cols=18 Identities=33% Similarity=1.134 Sum_probs=10.2
Q ss_pred CCCCCCCCCccCccCCCCC
Q 000283 784 PLTRVPEGNWYCPPCLSGN 802 (1724)
Q Consensus 784 PL~~VP~GdW~Cp~C~~~~ 802 (1724)
+...+|+ +|.||.|-..+
T Consensus 27 ~F~~Lp~-~w~CP~C~a~K 44 (47)
T PF00301_consen 27 PFEDLPD-DWVCPVCGAPK 44 (47)
T ss_dssp -GGGS-T-T-B-TTTSSBG
T ss_pred CHHHCCC-CCcCcCCCCcc
Confidence 3456666 69999998764
No 103
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=26.48 E-value=28 Score=36.08 Aligned_cols=48 Identities=25% Similarity=0.679 Sum_probs=31.7
Q ss_pred cccccccCCCCCCCeEEe------cCC---CCCCcccccCCCC-----CCCCCCCccCccCCC
Q 000283 752 GVCKVCGIDKDDDNVLLC------DTC---DSGYHTYCLTPPL-----TRVPEGNWYCPPCLS 800 (1724)
Q Consensus 752 ~~C~VCg~~~d~~~LLlC------D~C---d~~YHl~CL~PPL-----~~VP~GdW~Cp~C~~ 800 (1724)
..|..|.+...+.. ..| ..| ...|--.||.-.. ..+..++|.||.|.-
T Consensus 8 ~~CHqCrqKt~~~~-~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFK-TICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCc-eEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 46999987665444 456 666 6667666765332 234567899999964
No 104
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=23.48 E-value=1.7e+02 Score=28.81 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=21.7
Q ss_pred ccccccccCCCCCCCeEEecCCCCCCcccccC
Q 000283 751 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLT 782 (1724)
Q Consensus 751 d~~C~VCg~~~d~~~LLlCD~Cd~~YHl~CL~ 782 (1724)
...|.+|++.-..+... ---|+..||..|..
T Consensus 78 ~~~C~vC~k~l~~~~f~-~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFV-VFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEE-EeCCCeEEeccccc
Confidence 45799998766554443 33556999999975
No 105
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=21.58 E-value=39 Score=27.40 Aligned_cols=28 Identities=32% Similarity=0.745 Sum_probs=12.4
Q ss_pred ccccccCCCCCCCeEEecCCCCCCcccc
Q 000283 753 VCKVCGIDKDDDNVLLCDTCDSGYHTYC 780 (1724)
Q Consensus 753 ~C~VCg~~~d~~~LLlCD~Cd~~YHl~C 780 (1724)
.|.+|+....++..-.|..|+-..|+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 4889987766667888999999999887
No 106
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=21.19 E-value=25 Score=26.12 Aligned_cols=20 Identities=35% Similarity=0.715 Sum_probs=18.1
Q ss_pred chhhhccccccccccccccC
Q 000283 1330 HCRRCHLSFSARNELEEHND 1349 (1724)
Q Consensus 1330 hc~~ch~t~~~~~e~e~h~~ 1349 (1724)
-|..|.++|.+..+|..|..
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMR 21 (23)
T ss_dssp EETTTTEEESSHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHh
Confidence 58999999999999999964
No 107
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=20.97 E-value=22 Score=42.37 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=33.8
Q ss_pred ccccchhHHHHHHHHHHhhccCccccCHHHHHHHHHhCccc
Q 000283 138 LIRSNDELETSCKALVKWLDQDRFGLDVEFVQEIVEQLPRV 178 (1724)
Q Consensus 138 ~~~~~~~~~~~~~~l~~wl~qdr~g~d~~fvqe~~e~lp~~ 178 (1724)
++--..-||++|.---+|-.| ||+-+|-|||+|||||+.
T Consensus 206 l~l~tsHLEStr~h~P~r~~q--F~~~~~k~~EaIe~lPnA 244 (349)
T KOG2756|consen 206 LCLMTSHLESTRGHAPERMNQ--FKMVLKKMQEAIESLPNA 244 (349)
T ss_pred EEEEeccccCCCCCChHHHHH--HHHHHHHHHHHHHhCCCc
Confidence 445567889999999999877 889999999999999986
No 108
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=20.65 E-value=38 Score=30.80 Aligned_cols=21 Identities=38% Similarity=1.127 Sum_probs=16.7
Q ss_pred Eeec-ccc-cCCCCccchhhhcc
Q 000283 1316 YRCE-CLE-PVLPTRFHCRRCHL 1336 (1724)
Q Consensus 1316 ~rc~-cle-pi~p~r~hc~~ch~ 1336 (1724)
|+|+ |.. ||.=.|+||+.|.+
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~ 23 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDD 23 (48)
T ss_pred CCCCCCCCCccccceEECCCCCC
Confidence 3443 665 99999999999985
No 109
>COG1773 Rubredoxin [Energy production and conversion]
Probab=20.07 E-value=68 Score=30.32 Aligned_cols=41 Identities=32% Similarity=0.818 Sum_probs=24.4
Q ss_pred cccccccCCCCCCC-eEEecCCCCCCcccccCCCCCCCCCCCccCccCCCC
Q 000283 752 GVCKVCGIDKDDDN-VLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 801 (1724)
Q Consensus 752 ~~C~VCg~~~d~~~-LLlCD~Cd~~YHl~CL~PPL~~VP~GdW~Cp~C~~~ 801 (1724)
..|.+||---+++. --.|+.|+. -+...+|. +|.||.|-.+
T Consensus 4 ~~C~~CG~vYd~e~Gdp~~gi~pg--------T~fedlPd-~w~CP~Cg~~ 45 (55)
T COG1773 4 WRCSVCGYVYDPEKGDPRCGIAPG--------TPFEDLPD-DWVCPECGVG 45 (55)
T ss_pred eEecCCceEeccccCCccCCCCCC--------CchhhCCC-ccCCCCCCCC
Confidence 35888865333221 122444433 34577887 7999999864
Done!