Query 000283
Match_columns 1724
No_of_seqs 325 out of 1182
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 17:17:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000283.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_61-64//hhsearch_pdb/000283hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ouo_A HUNK1 protein, bromodom 1.0 1 1 145.5 8.7 122 573-710 4-128 (130)
2 4alg_A Bromodomain-containing 1.0 1 1 136.8 9.0 122 576-712 16-137 (154)
3 3mb3_A PH-interacting protein; 1.0 1 1 134.2 10.4 108 596-714 19-127 (135)
4 3fkm_X Signaling protein; brom 1.0 1 1 133.0 10.6 110 595-713 18-127 (166)
5 3nxb_A CAT eye syndrome critic 1.0 1 1 132.6 8.3 101 597-708 15-115 (116)
6 3jvl_A Bromodomain-containing 1.0 1 1 131.9 7.4 107 595-711 7-116 (120)
7 3g0l_A Hwalp4, bromodomain adj 1.0 1 1 131.0 10.9 103 597-710 12-114 (117)
8 2oss_A HUNK1 protein, bromodom 1.0 1 1 130.1 9.9 107 595-710 18-124 (127)
9 2yyn_A Transcription intermedi 1.0 1 1 130.0 10.5 105 595-711 17-123 (135)
10 3d7c_A General control of amin 1.0 1 1 128.3 10.0 104 596-710 5-108 (112)
No 1
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=1.00 E-value=1 Score=145.49 Aligned_cols=122 Identities=24% Similarity=0.362 Sum_probs=104.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC---HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 235999989985357775444671588999999999999144---14655210135687877777878777664334778
Q 000283 573 DVCGEDQPQKPTRKRKNRCFTSVPDVIMKQCRKVLRCAAAAD---EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPL 649 (1724)
Q Consensus 573 ~~~ge~~~~~p~kk~K~~~~iS~sd~IlKrCr~ILk~Ll~s~---~s~~F~~pVd~~lLdleD~i~qGLlGYp~IIkRPM 649 (1724)
++.++..+.+|.++++ .++. +++|..||+.++.++ .+++|.+||+... .++++|+.+|++||
T Consensus 4 ~~p~s~~~~~~~k~~~------~~~~-l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~--------~~~pdY~~iIk~Pm 68 (130)
T 2ouo_A 4 DVPDSQQHPAPEKSSK------VSEQ-LKCCSGILKEMFAKKHAAYAWPFYKPVDVEA--------LGLHDYCDIIKHPM 68 (130)
T ss_dssp ---------------C------HHHH-HHHHHHHHHHHTSGGGHHHHGGGSSCCCTTS--------TTCTTHHHHCSSCC
T ss_pred CCCCCCCCCCCCCCCC------CHHH-HHHHHHHHHHHHHCCCCHHHHHHCCCCCHHH--------CCCCCHHHHCCCCC
T ss_conf 7998778999888755------6999-9999999999996776355787537899032--------36985898818988
Q ss_pred CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7367885510354489825667659999874422147986489998983124599999864
Q 000283 650 DFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 710 (1724)
Q Consensus 650 DLGTIDlRLaaG~Y~gs~E~FAeDVRLVWsNi~tyN~dgSEVv~LAesLSqiFEslYkKqV 710 (1724)
||+||+.|+..+.|. +.+.|.+|++++|.||..||+.++.|+.+|..|...|+..|.+++
T Consensus 69 DL~tI~~kl~~~~Y~-s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 69 DMSTIKSKLEAREYR-DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp CHHHHHHHHHTTCCS-SHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 899999999868999-899999999999999999869999999999999999999998777
No 2
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=1.00 E-value=1 Score=136.80 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=102.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99998998535777544467158899999999999914414655210135687877777878777664334778736788
Q 000283 576 GEDQPQKPTRKRKNRCFTSVPDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTID 655 (1724)
Q Consensus 576 ge~~~~~p~kk~K~~~~iS~sd~IlKrCr~ILk~Ll~s~~s~~F~~pVd~~lLdleD~i~qGLlGYp~IIkRPMDLGTID 655 (1724)
++.+.+.|.++++ ..+.+...|+.||+.+..++.+++|.+||+...+ ++++|+.+|++||||+||+
T Consensus 16 ~~~~~~~p~~~~r------~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~--------~~PdY~~iIk~PMDL~tI~ 81 (154)
T 4alg_A 16 RGSHMSNPKKPGR------VTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKL--------GLPDYHKIIKQPMDMGTIK 81 (154)
T ss_dssp ----------CCC------CBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTT--------TCTTHHHHCSSCCCHHHHH
T ss_pred CCCCCCCCCCCCC------CHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHC--------CCCCHHHHCCCCCCHHHHH
T ss_conf 9877799999876------5099999999999999858685320578991322--------4987898838998899999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 551035448982566765999987442214798648999898312459999986443
Q 000283 656 LRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 712 (1724)
Q Consensus 656 lRLaaG~Y~gs~E~FAeDVRLVWsNi~tyN~dgSEVv~LAesLSqiFEslYkKqVL~ 712 (1724)
.|+..+.|. +.+.|.+|++++|.||..||+.++.|+.+|..|...|+..+.+....
T Consensus 82 ~kl~~~~Y~-s~~ef~~Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 82 RRLENNYYW-AASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp HHHHTTCCS-SHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 998548999-99999999999999999987999999999999999999999978731
No 3
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=1.00 E-value=1 Score=134.17 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 15889999999999991441465521013568787777787877766433477873678855103544898256676599
Q 000283 596 PDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 675 (1724)
Q Consensus 596 sd~IlKrCr~ILk~Ll~s~~s~~F~~pVd~~lLdleD~i~qGLlGYp~IIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVR 675 (1724)
...+.++|..||+.+..++.+++|..||+. .++++|+.+|++||||+||+.|+..+.|. +++.|.+|++
T Consensus 19 ~~~l~~~~~~il~~l~~~~~s~~F~~pv~~----------~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~~ 87 (135)
T 3mb3_A 19 IQAWKKQCEELLNLIFQCEDSEPFRQPVDL----------LEYPDYRDIIDTPMDFATVRETLEAGNYE-SPMELCKDVR 87 (135)
T ss_dssp SSTHHHHHHHHHHHHHHSGGGGGGSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHCCCCCH----------HHCCCHHHHHCCCCCHHHHHHHHHCCCCC-CHHHHHHHHH
T ss_conf 999999999999999829887665689992----------32798899937985899999998179999-9999999999
Q ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998744221479-864899989831245999998644332
Q 000283 676 EVWHHICTAYSD-QSDLLQLAGKLCQNFEVLYKKEVLTLV 714 (1724)
Q Consensus 676 LVWsNi~tyN~d-gSEVv~LAesLSqiFEslYkKqVL~~v 714 (1724)
++|.||..||++ ++.|+.+|..|...|+..+.+.+-.+.
T Consensus 88 li~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 127 (135)
T 3mb3_A 88 LIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYK 127 (135)
T ss_dssp HHHHHHHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999978898989999999999999999999999899
No 4
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=1.00 E-value=1 Score=133.01 Aligned_cols=110 Identities=12% Similarity=0.166 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 71588999999999999144146552101356878777778787776643347787367885510354489825667659
Q 000283 595 VPDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDV 674 (1724)
Q Consensus 595 ~sd~IlKrCr~ILk~Ll~s~~s~~F~~pVd~~lLdleD~i~qGLlGYp~IIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDV 674 (1724)
......+.|..||..+..++.+++|..||++.. .++++|+.+|++||||+||+.|+..+.|. +++.|..||
T Consensus 18 ~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~--------~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~-s~~ef~~Dv 88 (166)
T 3fkm_X 18 GNKQWYLLANQLILSLSKYEGGHIFEKLVDAKK--------QNCPDYYDVIKNPMSFSCIKTKLKKGQYA-YPSEFVKDV 88 (166)
T ss_dssp TTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-------------CCCGGGCCSSCCCHHHHHHHHHHTCCC-SHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHH--------CCCCCHHHHCCCCCCHHHHHHHHCCCCCC-CHHHHHHHH
T ss_conf 419999999999999985889712148898232--------44997887668999999999997279997-999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999874422147986489998983124599999864433
Q 000283 675 REVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLTL 713 (1724)
Q Consensus 675 RLVWsNi~tyN~dgSEVv~LAesLSqiFEslYkKqVL~~ 713 (1724)
++||.||..||++++.|+.+|..|...|+..+.++.+.-
T Consensus 89 ~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~~~~ 127 (166)
T 3fkm_X 89 QLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMGYNN 127 (166)
T ss_dssp HHHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999879999999999999999999999866410
No 5
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=1.00 E-value=1 Score=132.55 Aligned_cols=101 Identities=18% Similarity=0.305 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 58899999999999914414655210135687877777878777664334778736788551035448982566765999
Q 000283 597 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 676 (1724)
Q Consensus 597 d~IlKrCr~ILk~Ll~s~~s~~F~~pVd~~lLdleD~i~qGLlGYp~IIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRL 676 (1724)
+...++|..+|..+..++.+++|..||+. ..+++|+.+|++||||+||+.|+..+.|. +.+.|.+|+++
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~----------~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~~l 83 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDE----------SYAPNYYQIIKAPMDISSMEKKLNGGLYC-TKEEFVNDMKT 83 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCCCCH----------HHCCCHHHHCCCCCCHHHHHHHHCCCCCC-CHHHHHHHHHH
T ss_conf 89999999999999809885765586983----------31667698838999999999998179998-99999999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98744221479864899989831245999998
Q 000283 677 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 708 (1724)
Q Consensus 677 VWsNi~tyN~dgSEVv~LAesLSqiFEslYkK 708 (1724)
+|.||..||++++.++.+|..|...|+..+.|
T Consensus 84 i~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 84 MFRNCRKYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998799999999999999999999866
No 6
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=1.00 E-value=1 Score=131.86 Aligned_cols=107 Identities=21% Similarity=0.344 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCH---HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 715889999999999991441---46552101356878777778787776643347787367885510354489825667
Q 000283 595 VPDVIMKQCRKVLRCAAAADE---ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFL 671 (1724)
Q Consensus 595 ~sd~IlKrCr~ILk~Ll~s~~---s~~F~~pVd~~lLdleD~i~qGLlGYp~IIkRPMDLGTIDlRLaaG~Y~gs~E~FA 671 (1724)
.++. +++|..||+.+..++. +|+|.+||+... .|+++|+.+|++||||+||+.|+..+.|. +.+.|.
T Consensus 7 ~~~~-l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~--------~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~-~~~~f~ 76 (120)
T 3jvl_A 7 ISEQ-LKCCSGILKEMFAKKHAAYAWPFYKPVDVEA--------LGLHDYCDIIKHPMDMSTIKSKLESREYR-DAQEFG 76 (120)
T ss_dssp SCHH-HHHHHHHHHHHTSGGGHHHHGGGSSCCCHHH--------HTCTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHCCCCCCCCHHCCCCCCHH--------CCCCCHHHHCCCCCCHHHHHHHHCCCCCC-CHHHHH
T ss_conf 2999-9999999999986767652536318999031--------48998899858999999999998269998-999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6599998744221479864899989831245999998644
Q 000283 672 EDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVL 711 (1724)
Q Consensus 672 eDVRLVWsNi~tyN~dgSEVv~LAesLSqiFEslYkKqVL 711 (1724)
.|++++|.||..||+.++.++.+|..|...|+..+.+.+.
T Consensus 77 ~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 77 ADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999998799999999999999999999987758
No 7
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=1.00 E-value=1 Score=130.98 Aligned_cols=103 Identities=23% Similarity=0.361 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 58899999999999914414655210135687877777878777664334778736788551035448982566765999
Q 000283 597 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 676 (1724)
Q Consensus 597 d~IlKrCr~ILk~Ll~s~~s~~F~~pVd~~lLdleD~i~qGLlGYp~IIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRL 676 (1724)
...++.|..||..+..++.+++|.+||+. ..+++|+.+|++||||+||+.|+..+.|. +.+.|.+|+++
T Consensus 12 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~----------~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~~l 80 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHEDAWPFLLPVNL----------KLVPGYKKVIKKPMDFSTIREKLSSGQYP-NLETFALDVRL 80 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTTCGGGSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCCCCH----------HHCCCHHHHCCCCCCHHHHHHHHHCCCCC-CHHHHHHHHHH
T ss_conf 99999999999999849896665285986----------55588287858999999999998079997-99999999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9874422147986489998983124599999864
Q 000283 677 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 710 (1724)
Q Consensus 677 VWsNi~tyN~dgSEVv~LAesLSqiFEslYkKqV 710 (1724)
+|.||..||++++.++.+|..|...|+..|.+.+
T Consensus 81 i~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 81 VFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999879999999999999999999999988
No 8
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=1.00 E-value=1 Score=130.06 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 71588999999999999144146552101356878777778787776643347787367885510354489825667659
Q 000283 595 VPDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDV 674 (1724)
Q Consensus 595 ~sd~IlKrCr~ILk~Ll~s~~s~~F~~pVd~~lLdleD~i~qGLlGYp~IIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDV 674 (1724)
..+.+...|..||+.+..++.+++|..||+... .++++|+.+|++||||+||+.|+..+.|. +.+.|.+|+
T Consensus 18 ~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~--------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~ 88 (127)
T 2oss_A 18 QTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVK--------LNLPDYYKIIKTPMDMGTIKKRLENNYYW-NAQECIQDF 88 (127)
T ss_dssp CCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTT--------TTCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHH--------CCCCCHHHHCCCCCCHHHHHHHHHCCCCC-CHHHHHHHH
T ss_conf 599999999999999994955464448998232--------35864898827999999999999869999-999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999874422147986489998983124599999864
Q 000283 675 REVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 710 (1724)
Q Consensus 675 RLVWsNi~tyN~dgSEVv~LAesLSqiFEslYkKqV 710 (1724)
+++|+||..||+.++.++.+|..|...|+..+.+.+
T Consensus 89 ~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 89 NTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999879999999999999999999999778
No 9
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=129.97 Aligned_cols=105 Identities=20% Similarity=0.308 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC--CCCCCCHHHHHH
Q ss_conf 715889999999999991441465521013568787777787877766433477873678855103--544898256676
Q 000283 595 VPDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAF--GAYGGSHEAFLE 672 (1724)
Q Consensus 595 ~sd~IlKrCr~ILk~Ll~s~~s~~F~~pVd~~lLdleD~i~qGLlGYp~IIkRPMDLGTIDlRLaa--G~Y~gs~E~FAe 672 (1724)
.+...+++|..||..+..++.+++|..||+. ++++|+.+|++||||+||+.|+.. +.|. +.+.|.+
T Consensus 17 m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~-----------~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~-s~~ef~~ 84 (135)
T 2yyn_A 17 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-----------TVPDYYKIIKNPMDLSTIKKRLQEDYSMYS-KPEDFVA 84 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT-----------TSTTHHHHCSSCCCHHHHHHHHHSSSCCCS-SHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHCCCCCC-----------CCCCHHHHCCCCCCHHHHHHHHHCCCCCCC-CHHHHHH
T ss_conf 9999999999999999938533433597866-----------588789883898799999999852665779-9999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 599998744221479864899989831245999998644
Q 000283 673 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVL 711 (1724)
Q Consensus 673 DVRLVWsNi~tyN~dgSEVv~LAesLSqiFEslYkKqVL 711 (1724)
|++++|.||..||..++.|+.+|..|...|+.++.+..-
T Consensus 85 Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 123 (135)
T 2yyn_A 85 DFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYP 123 (135)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999998799999999999999999999998365
No 10
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=1.00 E-value=1 Score=128.26 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 15889999999999991441465521013568787777787877766433477873678855103544898256676599
Q 000283 596 PDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 675 (1724)
Q Consensus 596 sd~IlKrCr~ILk~Ll~s~~s~~F~~pVd~~lLdleD~i~qGLlGYp~IIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVR 675 (1724)
++.+.+.|..||+.+..++.+++|..||+. .++++|+.+|++||||+||+.|+..|.|. +.+.|.+|++
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~f~~Dv~ 73 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKK----------SEAPDYYEVIRFPIDLKTMTERLRSRYYV-TRKLFVADLQ 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHCCCCCC----------CCCCCHHHHCCCCCCHHHHHHHHCCCCCC-CHHHHHHHHH
T ss_conf 899999999999999849994431687982----------11448888806785899999998079996-9999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99874422147986489998983124599999864
Q 000283 676 EVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 710 (1724)
Q Consensus 676 LVWsNi~tyN~dgSEVv~LAesLSqiFEslYkKqV 710 (1724)
++|.||..||++++.++.+|..|...|+..+.+..
T Consensus 74 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 74 RVIANCREYNPPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999879999999999999999999998777
Done!