BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000284
(1723 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 119 bits (298), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/218 (32%), Positives = 124/218 (56%), Gaps = 4/218 (1%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
KR K + ++F ++ GE FG +G NGAGKTTTL +IS P+ G +FGK++ +
Sbjct: 23 KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE 82
Query: 1428 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAK 1486
P R+LI Y P+ + E+L A + ++++V E+ E L + K
Sbjct: 83 PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMV-ERATEIAGLGEKIK 141
Query: 1487 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1546
T S G RKL +A A++ +P + ILDEP++G+D + R + +++ + ++++G T +
Sbjct: 142 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ-ASQEGLT-I 199
Query: 1547 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1584
++++H+M E + LC RI ++ G + G+ + LK R+
Sbjct: 200 LVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 237
Score = 109 bits (272), Expect = 1e-23, Method: Composition-based stats.
Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 1/207 (0%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528
+ + + E +I L+G NGAGK+TT+ ++ LI P++G VFGKN+ + E+RK +
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90
Query: 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGG 588
P+ + + E+L A +E +V + GL +K+ V S G
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKG 150
Query: 589 MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXX-XXXXXTTHSMDEAE 647
M RKL + AL+ + ++ ILDEPTSG+D + R + ++H+M E E
Sbjct: 151 MVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVE 210
Query: 648 ELGDRIAIMANGSLKCCGSSLFLKHQY 674
L DRIA++ NG++ G+ LK +Y
Sbjct: 211 FLCDRIALIHNGTIVETGTVEELKERY 237
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 117 bits (293), Expect = 5e-26, Method: Composition-based stats.
Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 7/229 (3%)
Query: 1360 LRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFI 1419
+ K+YPGG RS V ++F ++ GE G LG +G+GKTT L +I+G E PT G +I
Sbjct: 20 VEKIYPGGARS-----VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74
Query: 1420 FGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF 1479
GK + +D +R +G Q AL +++TV +++ R K V + MD V E L
Sbjct: 75 GGKRV-TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFM 133
Query: 1480 DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLST 1539
L +A + LSGG ++++++A A+ P +++ DEP +D +R + + ++
Sbjct: 134 RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 193
Query: 1540 RQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFL 1588
G T+V + TH EA + R+ ++ G + G+P+ + + G
Sbjct: 194 EMGVTSVFV-THDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
Score = 87.0 bits (214), Expect = 9e-17, Method: Composition-based stats.
Identities = 58/219 (26%), Positives = 112/219 (51%), Gaps = 6/219 (2%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+ + K+Y G +V + + E +++ LLG +G+GK+T + ++ GL PT GD
Sbjct: 15 IEFVGVEKIYP---GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD 71
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
+ GK +T D+ ++ +G+ Q LF +TV +++ K V ++ +++ V E++
Sbjct: 72 VWIGGKRVT-DLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR--LTWQXX 627
+ L N LSGG +++++L AL +V++ DEP + +D R T+
Sbjct: 131 RFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ 190
Query: 628 XXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGS 666
TH +EA E+ DR+ ++ G+++ G+
Sbjct: 191 VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGT 229
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 118/207 (57%), Gaps = 7/207 (3%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434
++ +L+ V++GE F LG GAGKT L +I+G P G + GKD+ +D +
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV-TDLSPEKHD 73
Query: 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDLLKHAKKPSFTLS 1493
I + Q +L ++ V+++LE R+K + + R+ D + +E L ++ TLS
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP----LTLS 129
Query: 1494 GGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSM 1553
GG ++++++A A++ +P I++LDEP + +DP + E++S L ++ K V+ TH
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH-KKNKLTVLHITHDQ 188
Query: 1554 NEAQALCTRIGIMVGGQLRCIGSPQHL 1580
EA+ + RI +++ G+L +G P+ +
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGKPEEI 215
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 100/200 (50%), Gaps = 6/200 (3%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
++++L L + + +LG GAGK+ + ++ G P +G L+ GK++T D+ +
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT-DLSPEKHD 73
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 587
+ Q LFP + V+++LE +K +K+ V + ++ + ++ LSG
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSG 130
Query: 588 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXX--XXXXXXXXXTTHSMDE 645
G +++++L AL+ + K+++LDEP S +DP + + TH E
Sbjct: 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190
Query: 646 AEELGDRIAIMANGSLKCCG 665
A + DRIA++ +G L G
Sbjct: 191 ARIMADRIAVVMDGKLIQVG 210
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 124/226 (54%), Gaps = 9/226 (3%)
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
D +I L N+ KV+ G R+ A+++++ V AG+ +G +G +GAGK+T + ++ E
Sbjct: 21 DKHMIKLSNITKVFHQGTRTIQ--ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78
Query: 1411 YPTDGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY 1466
PT+G+ + G+++ S+ ARR IG Q LL TV ++ L + +
Sbjct: 79 RPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD 138
Query: 1467 RMDDVVMEKLVEFDL-LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1525
+ V E L L KH PS LSGG K+++++A A+ +P +++ D+ ++ +DP
Sbjct: 139 EVKRRVTELLSLVGLGDKHDSYPS-NLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 1526 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
R + E++ ++ R G T ++L TH M+ + +C + ++ G+L
Sbjct: 198 TTRSILELLKDINRRLGLT-ILLITHEMDVVKRICDCVAVISNGEL 242
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 113/222 (50%), Gaps = 6/222 (2%)
Query: 446 DGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP 505
D I++ + KV+ A+N++ L + QI ++G +GAGKST I + L P
Sbjct: 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 506 TTGDALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELL 561
T G LV G+ +T +++ + R+ +G+ Q+ L TV ++ + L ++ +
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 140
Query: 562 ESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 621
+ V E++ VGL DK + LSGG K+++++ AL + KV++ D+ TS +DP + R
Sbjct: 141 KRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200
Query: 622 --LTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSL 661
L TH MD + + D +A+++NG L
Sbjct: 201 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 123/223 (55%), Gaps = 9/223 (4%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I L N+ KV+ G R+ A+++++ V AG+ +G +G +GAGK+T + ++ E PT
Sbjct: 1 MIKLSNITKVFHQGTRTIQ--ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT 58
Query: 1414 DGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1469
+G+ + G+++ S+ ARR IG Q LL TV ++ L + + +
Sbjct: 59 EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVK 118
Query: 1470 DVVMEKLVEFDL-LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1528
V E L L KH PS LSGG K+++++A A+ +P +++ DE ++ +DP R
Sbjct: 119 RRVTELLSLVGLGDKHDSYPS-NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 1529 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ E++ ++ R G T ++L TH M+ + +C + ++ G+L
Sbjct: 178 SILELLKDINRRLGLT-ILLITHEMDVVKRICDCVAVISNGEL 219
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 6/218 (2%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++ + KV+ A+N++ L + QI ++G +GAGKST I + L PT G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 510 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 565
LV G+ +T +++ + R+ +G+ Q+ L TV ++ + L ++ ++ V
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR--LT 623
E++ VGL DK + LSGG K+++++ AL + KV++ DE TS +DP + R L
Sbjct: 122 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 624 WQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSL 661
TH MD + + D +A+++NG L
Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 6/218 (2%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
KR AV+ L +++ GE LG +G GKTTTL MI+G E PT+G + +D+
Sbjct: 20 KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL 79
Query: 1428 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV--MEKLVEFDLLKHA 1485
P R I Q A+ ++TV E++ +IK + +D V +L++ + L +
Sbjct: 80 PPKDRN-ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN- 137
Query: 1486 KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTA 1545
+ P+ LSGG +++++VA A++ +P ++++DEP + +D + M I +L + K
Sbjct: 138 RYPA-QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVT 195
Query: 1546 VILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
I TH EA + RI +M GQL IGSP + R
Sbjct: 196 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 233
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 9/227 (3%)
Query: 447 GRCIQIRKLHKVYA---TKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL 502
G I++ K+ +V TKR GN AVN L LT+ + + L LLG +G GK+TT+ M+ GL
Sbjct: 2 GNNIEVIKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL 61
Query: 503 IPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLE 562
PT G + FG + + + + Q ++P +TV E++ +K ++ ++
Sbjct: 62 EEPTEG-RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEID 120
Query: 563 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
V + + + + +N LSGG ++++++ A++ + V+++DEP S +D +R+
Sbjct: 121 KRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA-KLRV 179
Query: 623 TWQXXXXXXXXXXXXXT---THSMDEAEELGDRIAIMANGSLKCCGS 666
+ T TH EA +GDRIA+M G L GS
Sbjct: 180 AMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 226
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 6/218 (2%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
KR AV+ L +++ GE LG +G GKTTTL MI+G E PT+G + +D+
Sbjct: 19 KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL 78
Query: 1428 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV--MEKLVEFDLLKHA 1485
P R I Q A+ ++TV E++ +IK + +D V +L++ + L +
Sbjct: 79 PPKDRN-ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN- 136
Query: 1486 KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTA 1545
+ P+ LSGG +++++VA A++ +P ++++DEP + +D + M I +L + K
Sbjct: 137 RYPA-QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVT 194
Query: 1546 VILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
I TH EA + RI +M GQL IGSP + R
Sbjct: 195 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 9/227 (3%)
Query: 447 GRCIQIRKLHKVYA---TKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL 502
G I++ K+ +V TKR GN AVN L LT+ + + L LLG +G GK+TT+ M+ GL
Sbjct: 1 GNNIEVIKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL 60
Query: 503 IPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLE 562
PT G + FG + + + + Q ++P +TV E++ +K ++ ++
Sbjct: 61 EEPTEG-RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEID 119
Query: 563 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
V + + + + +N LSGG ++++++ A++ + V+++DEP S +D +R+
Sbjct: 120 KRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA-KLRV 178
Query: 623 TWQXXXXXXXXXXXXXT---THSMDEAEELGDRIAIMANGSLKCCGS 666
+ T TH EA +GDRIA+M G L GS
Sbjct: 179 AMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 225
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 9/226 (3%)
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
D I L N+ KV+ G R+ A+++++ V AG+ +G +G +GAGK+T + ++ E
Sbjct: 21 DKHXIKLSNITKVFHQGTRTIQ--ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78
Query: 1411 YPTDGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY 1466
PT+G+ + G+++ S+ ARR IG Q LL TV ++ L + +
Sbjct: 79 RPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKD 138
Query: 1467 RMDDVVMEKLVEFDL-LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1525
+ V E L L KH PS LSGG K+++++A A+ +P +++ D+ ++ +DP
Sbjct: 139 EVKRRVTELLSLVGLGDKHDSYPS-NLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 1526 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
R + E++ ++ R G T ++L TH + + +C + ++ G+L
Sbjct: 198 TTRSILELLKDINRRLGLT-ILLITHEXDVVKRICDCVAVISNGEL 242
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 6/222 (2%)
Query: 446 DGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP 505
D I++ + KV+ A+N++ L + QI ++G +GAGKST I + L P
Sbjct: 21 DKHXIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 506 TTGDALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELL 561
T G LV G+ +T +++ + R+ +G Q+ L TV ++ + L ++ +
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 140
Query: 562 ESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 621
+ V E++ VGL DK + LSGG K+++++ AL + KV++ D+ TS +DP + R
Sbjct: 141 KRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200
Query: 622 --LTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSL 661
L TH D + + D +A+++NG L
Sbjct: 201 SILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGEL 242
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 155/318 (48%), Gaps = 30/318 (9%)
Query: 1374 VAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433
V + + GE F+G +G GK+T L MI+G E T G FI G+ +D A R
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPAER 75
Query: 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH--AKKPSFT 1491
+G Q AL +L+V E++ ++ G + ++ V ++ E L H +KP
Sbjct: 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV-NQVAEVLQLAHLLDRKPK-A 133
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
LSGG ++++++ ++ +P + +LDEP + +D + M ISRL R G+T +I TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT-MIYVTH 192
Query: 1552 SMNEAQALCTRIGIMVGGQLRCIGSPQHL----KTRF---------GNFLELEVKPTEVS 1598
EA L +I ++ G++ +G P L RF NFL ++V T +
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVKVTATAID 252
Query: 1599 SVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSEN---ATAAEISLSQEMLL 1655
V +E L +++V+ +P + R + + +G I E+ + A++ L E+ +
Sbjct: 253 QVQVE-LPMPNRQQVW-LPVESRDVQVGANMSLG----IRPEHLLPSDIADVILEGEVQV 306
Query: 1656 IVGRWLGNEERIKTLISS 1673
+ LGNE +I I S
Sbjct: 307 V--EQLGNETQIHIQIPS 322
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 113/227 (49%), Gaps = 9/227 (3%)
Query: 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 508
+Q++ + K + G + L ++E + + +G +G GKST + M+ GL T+G
Sbjct: 3 SVQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 509 DALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 568
D L G+ D +G+G+ Q L+P L+V E++ L G K+E++ V ++
Sbjct: 59 D-LFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV 117
Query: 569 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXX 628
+ + LA ++ +ALSGG ++++++G L+ + V +LDEP S +D ++R+ +
Sbjct: 118 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD-AALRVQMRIEI 176
Query: 629 XXXXX---XXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672
TH EA L D+I ++ G + G L L H
Sbjct: 177 SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 154/318 (48%), Gaps = 30/318 (9%)
Query: 1374 VAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433
V + + GE F+G +G GK+T L MI+G E T G FI K + P A R
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76
Query: 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH--AKKPSFT 1491
+G Q AL +L+V E++ ++ G + ++ V ++ E L H +KP
Sbjct: 77 -VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV-NQVAEVLQLAHLLDRKPK-A 133
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
LSGG ++++++ ++ +P + +LDEP + +D + M ISRL R G+T +I TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT-MIYVTH 192
Query: 1552 SMNEAQALCTRIGIMVGGQLRCIGSPQHL----KTRF---------GNFLELEVKPTEVS 1598
EA L +I ++ G++ +G P L RF NFL ++V T +
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVKVTATAID 252
Query: 1599 SVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSEN---ATAAEISLSQEMLL 1655
V +E L +++V+ +P + R + + +G I E+ + A++ L E+ +
Sbjct: 253 QVQVE-LPMPNRQQVW-LPVESRDVQVGANMSLG----IRPEHLLPSDIADVILEGEVQV 306
Query: 1656 IVGRWLGNEERIKTLISS 1673
+ LGNE +I I S
Sbjct: 307 V--EQLGNETQIHIQIPS 322
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 113/227 (49%), Gaps = 9/227 (3%)
Query: 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 508
+Q++ + K + G + L ++E + + +G +G GKST + M+ GL T+G
Sbjct: 3 SVQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 509 DALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 568
D L G+ D +G+G+ Q L+P L+V E++ L G K+E++ V ++
Sbjct: 59 D-LFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV 117
Query: 569 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXX 628
+ + LA ++ +ALSGG ++++++G L+ + V +LDEP S +D ++R+ +
Sbjct: 118 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD-AALRVQMRIEI 176
Query: 629 XXXXX---XXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672
TH EA L D+I ++ G + G L L H
Sbjct: 177 SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 97.8 bits (242), Expect = 4e-20, Method: Composition-based stats.
Identities = 67/215 (31%), Positives = 113/215 (52%), Gaps = 17/215 (7%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 523
G AV + L + + + + LLG +G GK+TT+ M+ GL P+ G + G + AD +
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPE- 71
Query: 524 IRKGLGVCPQ-YDI--------LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL 574
KG+ V P+ DI L+P +TV +++ L+ V + ++ V E+ + +GL
Sbjct: 72 --KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL 129
Query: 575 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXX 634
+ +N R LSGG +++++LG A++ +V ++DEP S +D +R+ +
Sbjct: 130 TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA-KLRVRMRAELKKLQRQ 188
Query: 635 XXXXT---THSMDEAEELGDRIAIMANGSLKCCGS 666
T TH EA +GDRIA+M G L+ GS
Sbjct: 189 LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223
Score = 95.1 bits (235), Expect = 3e-19, Method: Composition-based stats.
Identities = 64/218 (29%), Positives = 108/218 (49%), Gaps = 8/218 (3%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA--- 1431
AV ++ V+ GE LG +G GKTTTL MI+G E P+ G +I G + +DP+
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKGIFV 76
Query: 1432 ---RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKP 1488
R I Q AL ++TV +++ +++ V +D V E L + +
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK 136
Query: 1489 SFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1548
LSGG ++++++ A++ P + ++DEP + +D + M + +L + G T I
Sbjct: 137 PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT-TIY 195
Query: 1549 TTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1586
TH EA + RI +M G L+ +GSP + + N
Sbjct: 196 VTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPAN 233
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 155/318 (48%), Gaps = 30/318 (9%)
Query: 1374 VAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433
V + + GE F+G +G GK+T L MI+G E T G FI G+ +D A R
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPAER 75
Query: 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH--AKKPSFT 1491
+G Q AL +L+V E++ ++ G + ++ V ++ E L H +KP
Sbjct: 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV-NQVAEVLQLAHLLDRKPK-A 133
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
LSGG ++++++ ++ +P + +LD+P + +D + M ISRL R G+T +I TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRT-MIYVTH 192
Query: 1552 SMNEAQALCTRIGIMVGGQLRCIGSPQHL----KTRF---------GNFLELEVKPTEVS 1598
EA L +I ++ G++ +G P L RF NFL ++V T +
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVKVTATAID 252
Query: 1599 SVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSEN---ATAAEISLSQEMLL 1655
V +E L +++V+ +P + R + + +G I E+ + A++ L E+ +
Sbjct: 253 QVQVE-LPMPNRQQVW-LPVESRDVQVGANMSLG----IRPEHLLPSDIADVILEGEVQV 306
Query: 1656 IVGRWLGNEERIKTLISS 1673
+ LGNE +I I S
Sbjct: 307 V--EQLGNETQIHIQIPS 322
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 113/227 (49%), Gaps = 9/227 (3%)
Query: 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 508
+Q++ + K + G + L ++E + + +G +G GKST + M+ GL T+G
Sbjct: 3 SVQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 509 DALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 568
D L G+ D +G+G+ Q L+P L+V E++ L G K+E++ V ++
Sbjct: 59 D-LFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV 117
Query: 569 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXX 628
+ + LA ++ +ALSGG ++++++G L+ + V +LD+P S +D ++R+ +
Sbjct: 118 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLD-AALRVQMRIEI 176
Query: 629 XXXXX---XXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672
TH EA L D+I ++ G + G L L H
Sbjct: 177 SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 95.5 bits (236), Expect = 2e-19, Method: Composition-based stats.
Identities = 73/267 (27%), Positives = 131/267 (49%), Gaps = 13/267 (4%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434
A++++ ++ GE LG +G+GK+T L I+G PT G + KD+ P R
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN- 76
Query: 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSG 1494
+G Q AL ++TV +++ ++ +D V E + K + + LSG
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSG 136
Query: 1495 GNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1554
G ++++++A A++ +P +++LDEP + +D + + + + RL G T V + TH
Sbjct: 137 GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYV-THDQA 195
Query: 1555 EAQALCTRIGIMVGGQLRCIGSPQHL----KTRF-GNFLELEVKPTEVSSVDLEDLCQII 1609
EA A+ RI ++ G++ +G+P + K +F G F L P +ED +I
Sbjct: 196 EALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGF--LGNPPMNFVEAKVEDGKLVI 253
Query: 1610 QERV-FDIPSQRRSLLDD---LEVCIG 1632
E+ IP Q ++ + EV IG
Sbjct: 254 TEKSKLPIPKQYVEIVKETGITEVIIG 280
Score = 87.8 bits (216), Expect = 5e-17, Method: Composition-based stats.
Identities = 60/218 (27%), Positives = 114/218 (52%), Gaps = 7/218 (3%)
Query: 462 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM 521
K GN A+N++ L + + + +ALLG +G+GKST + + G+ PT+G K++T ++
Sbjct: 12 KFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVT-EL 70
Query: 522 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIV 581
+ +G+ Q L+P +TV +++ L+ E ++ V E+ + + +N
Sbjct: 71 PPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRY 130
Query: 582 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT-- 639
LSGG ++++++ AL+ + +V++LDEP S +D +RL + T
Sbjct: 131 PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDAL-LRLEVRAELKRLQKELGITTVY 189
Query: 640 -THSMDEAEELGDRIAIMANGSLKCCGS--SLFLKHQY 674
TH EA + DRIA++ G + G+ ++ K +Y
Sbjct: 190 VTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY 227
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 113/209 (54%), Gaps = 8/209 (3%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434
AV ++F V+ GE LG +G GKTTTL M++G PT G + F + +D R
Sbjct: 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY-FDDVLVNDIPPKYRE 76
Query: 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME---KLVEFDLLKHAKKPSFT 1491
+G Q AL ++TV E++ R + +++ ++ V+E KL+ +LL +KP+
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLD--RKPT-Q 133
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
LSGG ++++++A A++ P +++ DEP + +D + M I L G T+V + TH
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYV-TH 192
Query: 1552 SMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
EA + +RI + G+L G+P +
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 5/206 (2%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 523
G AV+ + + + + +ALLG +G GK+TT+ ML G+ PT+G+ + F + D+
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE-IYFDDVLVNDIPP 72
Query: 524 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 583
+ +G+ Q L+P +TV E++ + + ++ +E V E+ ++ + + ++
Sbjct: 73 KYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT 132
Query: 584 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT---T 640
LSGG +++++L AL+ KV++ DEP S +D ++R+ + + T
Sbjct: 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLD-ANLRMIMRAEIKHLQQELGITSVYVT 191
Query: 641 HSMDEAEELGDRIAIMANGSLKCCGS 666
H EA + RIA+ G L G+
Sbjct: 192 HDQAEAMTMASRIAVFNQGKLVQYGT 217
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 94.7 bits (234), Expect = 4e-19, Method: Composition-based stats.
Identities = 68/215 (31%), Positives = 108/215 (50%), Gaps = 17/215 (7%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 523
G+ AV L L + + + L LLG +G GK+TT+ + GL PT G + N+ AD +
Sbjct: 17 GDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYI-EDNLVADPE- 74
Query: 524 IRKGLGVCP---------QYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL 574
KG+ V P Q L+P TV +++ L+ V ++ ++ V E+ + +GL
Sbjct: 75 --KGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGL 132
Query: 575 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXX 634
+ +N R LSGG +++++LG A+I KV + DEP S +D +R+ +
Sbjct: 133 TELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDA-KLRVKXRAELKKLQRQ 191
Query: 635 XXXXT---THSMDEAEELGDRIAIMANGSLKCCGS 666
T TH EA GDRIA+ G L+ G+
Sbjct: 192 LGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGT 226
Score = 85.1 bits (209), Expect = 3e-16, Method: Composition-based stats.
Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 8/219 (3%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
KR AV L+ ++ GE LG +G GKTTTL I+G E PT G +I ++ +D
Sbjct: 14 KRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYI-EDNLVAD 72
Query: 1428 PKAA------RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL 1481
P+ R + Q AL + TV +++ +++ V + +D V E L
Sbjct: 73 PEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGL 132
Query: 1482 LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1541
+ + LSGG ++++++ A+I P + + DEP + +D + + +L +
Sbjct: 133 TELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL 192
Query: 1542 GKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
G T I TH EA RI + G+L+ +G+P +
Sbjct: 193 GVT-TIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 33/242 (13%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I ++N+ KV+ GK VA+ ++ +++ GE FG LG +GAGKTT + +I+G + P+
Sbjct: 4 IIVKNVSKVFKKGK----VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 1415 GTAFIFGKDIRSDPK----AARRLIGYCPQFDALLEYLTVQEHL------------ELYA 1458
G + + + S+ K R IG Q AL LT E++ E+
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 1459 RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP 1518
R++ VA+ L +L H + LSGG ++++++A A++ DP +++LDEP
Sbjct: 120 RVEEVAKI---------LDIHHVLNHFPR---ELSGGQQQRVALARALVKDPSLLLLDEP 167
Query: 1519 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
+ +D + ++ + +R G T +++ +H + A+ R+G++V G+L +G P+
Sbjct: 168 FSNLDARMRDSARALVKEVQSRLGVT-LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPE 226
Query: 1579 HL 1580
L
Sbjct: 227 DL 228
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 115/230 (50%), Gaps = 22/230 (9%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG- 508
I ++ + KV+ K+G A++++ + + + +LG +GAGK+T + ++ GL P+TG
Sbjct: 4 IIVKNVSKVF--KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 509 ----DALVF--GKNITADMDEIRKGLGVCPQYDILFPELTVREHLEM-FAVLKGVKEELL 561
D LV GK I D + +G+ Q L+P LT E++ +K KEE+
Sbjct: 62 LYFDDRLVASNGKLIVPPED---RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR 118
Query: 562 ESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 619
+ V VA+++D + +N R LSGG +++++L AL+ D +++LDEP S +D
Sbjct: 119 KRVEEVAKILD---IHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLD-AR 174
Query: 620 MRLTWQXXXXXXXX---XXXXXTTHSMDEAEELGDRIAIMANGSLKCCGS 666
MR + + +H + + DR+ ++ G L G
Sbjct: 175 MRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 125/242 (51%), Gaps = 33/242 (13%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I ++N+ KV+ GK VA+ ++ +++ GE FG LG +GAGKTT + +I+G + P+
Sbjct: 4 IIVKNVSKVFKKGK----VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 1415 GTAFIFGKDIRSDPK----AARRLIGYCPQFDALLEYLTVQEHL------------ELYA 1458
G + + + S+ K R IG Q AL LT E++ E+
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 1459 RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP 1518
R++ VA+ L +L H + LSG ++++++A A++ DP +++LDEP
Sbjct: 120 RVEEVAKI---------LDIHHVLNHFPR---ELSGAQQQRVALARALVKDPSLLLLDEP 167
Query: 1519 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
+ +D + ++ + +R G T +++ +H + A+ R+G++V G+L +G P+
Sbjct: 168 FSNLDARMRDSARALVKEVQSRLGVT-LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPE 226
Query: 1579 HL 1580
L
Sbjct: 227 DL 228
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 114/230 (49%), Gaps = 22/230 (9%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG- 508
I ++ + KV+ K+G A++++ + + + +LG +GAGK+T + ++ GL P+TG
Sbjct: 4 IIVKNVSKVF--KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 509 ----DALVF--GKNITADMDEIRKGLGVCPQYDILFPELTVREHLEM-FAVLKGVKEELL 561
D LV GK I D + +G+ Q L+P LT E++ +K KEE+
Sbjct: 62 LYFDDRLVASNGKLIVPPED---RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR 118
Query: 562 ESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 619
+ V VA+++D + +N R LSG +++++L AL+ D +++LDEP S +D
Sbjct: 119 KRVEEVAKILD---IHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD-AR 174
Query: 620 MRLTWQXXXXXXXX---XXXXXTTHSMDEAEELGDRIAIMANGSLKCCGS 666
MR + + +H + + DR+ ++ G L G
Sbjct: 175 MRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 87.0 bits (214), Expect = 9e-17, Method: Composition-based stats.
Identities = 58/215 (26%), Positives = 113/215 (52%), Gaps = 9/215 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I + +L K + G+ + + + + E +++ ++G +G+GKST + L L G+
Sbjct: 25 IDVHQLKKSF----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 80
Query: 510 ALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAV-LKGVKEELLESVV 565
++ G N+ A +++++R+ +G+ Q LFP +TV ++ + + ++ E E+
Sbjct: 81 IIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA 140
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM-RLTW 624
E++D+VGL DK + +LSGG +++++ AL + K+++ DEPTS +DP + +
Sbjct: 141 MELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS 200
Query: 625 QXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANG 659
TH M A E+GDR+ M G
Sbjct: 201 VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGG 235
Score = 67.4 bits (163), Expect = 6e-11, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 6/205 (2%)
Query: 1383 VQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR---SDPKAARRLIGYCP 1439
++ GE +G +G+GK+T L ++ E +G I G +++ ++ R +G
Sbjct: 47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVF 106
Query: 1440 QFDALLEYLTVQEHLELYA-RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKR 1498
Q L ++TV ++ L +++ + + ME L + L A +LSGG +
Sbjct: 107 QRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQ 166
Query: 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQA 1558
++++A A+ +P I++ DEP++ +DP + V+ +L+ +G T V++ TH M A+
Sbjct: 167 RVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVVV-THEMGFARE 224
Query: 1559 LCTRIGIMVGGQLRCIGSPQHLKTR 1583
+ R+ M GG + G P+ L R
Sbjct: 225 VGDRVLFMDGGYIIEEGKPEDLFDR 249
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 19/230 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT--- 506
I++ L VY + G A + + L + EN + A++G + +GKST I + +PP
Sbjct: 5 IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 507 -TGDALVFGKN-ITADMDEIR----KGLGVCPQ--YDILFPELTVREHLEMFAVLKGVK- 557
+G L GK+ +T +E+R K + + PQ L P + V EH + GV+
Sbjct: 65 LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRW 124
Query: 558 --EELLESVVAEMVDEVGLADK--VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 613
EL+E +E + V L + +N LSGGMK+++ + +AL+ D V+ILDEPTS
Sbjct: 125 SHSELIEK-ASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTS 183
Query: 614 GMDPYSMRLTWQXXXXXXXXXXXXX--TTHSMDEAEELGDRIAIMANGSL 661
+D + Q TH + A EL D++A++ G+L
Sbjct: 184 ALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNL 233
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 25/252 (9%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
II + +LR VY R A ++ + +G + +GK+T + ++ P
Sbjct: 4 IIRVEDLRAVY--LVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPN 61
Query: 1414 ----DGTAFIFGKDIRSDPKAARRLIGY-----CPQF--DALLEYLTVQEHLELYARIKG 1462
G GKD+ + + R I + PQ +L + V EH + G
Sbjct: 62 GRILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHG 121
Query: 1463 V--AEYRMDDVVMEKLVEFDLLKHAKKPSFTL--SGGNKRKLSVAIAMIGDPPIVILDEP 1518
V + + + EKL L A S+ L SGG K+++ +A+A++ DP ++ILDEP
Sbjct: 122 VRWSHSELIEKASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEP 181
Query: 1519 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL------- 1571
++ +D + + + +++ L T +I TH + A L ++ ++ GG L
Sbjct: 182 TSALDVLTQAHIIQLLKELKKMLKIT-LIFVTHDIAVAAELADKVAVIYGGNLVEYNSTF 240
Query: 1572 RCIGSPQHLKTR 1583
+ +P H TR
Sbjct: 241 QIFKNPLHPYTR 252
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 85.5 bits (210), Expect = 3e-16, Method: Composition-based stats.
Identities = 61/214 (28%), Positives = 113/214 (52%), Gaps = 14/214 (6%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I L+N+ K Y G+ + A+ ++ +++ GE +G +G+GK+T L++I + PT
Sbjct: 1 MIKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT 58
Query: 1414 DGTAFIFG---KDIRSD--PKAARRLIGYCPQFDALLEYLTVQEHLEL-----YARIKGV 1463
+G +I D+ D K R IG+ Q L+ LT E++EL Y
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 1464 AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
E R + K+ E + KP+ LSGG ++++++A A+ +PPI++ D+P+ +D
Sbjct: 119 EERRKRALECLKMAELEERFANHKPN-QLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 1524 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1557
+ +++ +L+ GKT V++ TH +N A+
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKT-VVVVTHDINVAR 210
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 55/230 (23%), Positives = 108/230 (46%), Gaps = 24/230 (10%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+++ + K Y A+ ++ L + E + ++++G +G+GKST ++++ L PT G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 510 ALVFGKNI-TADMDE------IRKGLGVCPQYDILFPELTVREHLEMFAVLK-------- 554
V+ NI T D+D+ R +G Q L P LT E++E+ + K
Sbjct: 62 --VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 555 GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 614
++ LE + ++E K N LSGG ++++++ AL + +++ D+PT
Sbjct: 120 ERRKRALECLKMAELEERFANHKPN----QLSGGQQQRVAIARALANNPPIILADQPTGA 175
Query: 615 MDPYSMRLTWQXXXXXXXX--XXXXXTTHSMDEAEELGDRIAIMANGSLK 662
+D + Q TH ++ A G+RI + +G ++
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE 224
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 122/235 (51%), Gaps = 13/235 (5%)
Query: 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT 507
+ I + +L K + G+ + + + + E +++ ++G +G+GKST + L L
Sbjct: 2 QMIDVHQLKKSF----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE 57
Query: 508 GDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK--EELLE 562
G+ ++ G N+ A +++++R+ +G+ Q LFP +TV ++ + A +K K E E
Sbjct: 58 GEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAE 116
Query: 563 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM-R 621
+ E++D+VGL DK + +LSGG +++++ AL + K+++ DEPTS +DP +
Sbjct: 117 AKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE 176
Query: 622 LTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCG--SSLFLKHQY 674
+ TH M A E+GDR+ M G + G LF + Q+
Sbjct: 177 VLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQH 231
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 105/210 (50%), Gaps = 6/210 (2%)
Query: 1378 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS---DPKAARRL 1434
+ ++ GE +G +G+GK+T L ++ E +G I G ++++ + R
Sbjct: 21 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 80
Query: 1435 IGYCPQFDALLEYLTVQEHLELYA-RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLS 1493
+G Q L ++TV ++ L +++ + + ME L + L A +LS
Sbjct: 81 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLS 140
Query: 1494 GGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSM 1553
GG +++++A A+ +P I++ DEP++ +DP + V+ +L+ +G T V++ TH M
Sbjct: 141 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVVV-THEM 198
Query: 1554 NEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
A+ + R+ M GG + G P+ L R
Sbjct: 199 GFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 84.0 bits (206), Expect = 7e-16, Method: Composition-based stats.
Identities = 62/213 (29%), Positives = 110/213 (51%), Gaps = 14/213 (6%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I L+N+ K Y G+ + A+ ++ +++ GE G +G+GK+T L++I + PT+
Sbjct: 2 IKLKNVTKTYKXGE--EIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTE 59
Query: 1415 GTAFIFG---KDIRSD--PKAARRLIGYCPQFDALLEYLTVQEHLEL-----YARIKGVA 1464
G +I D+ D K R IG+ Q L+ LT E++EL Y
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE 119
Query: 1465 EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1524
E R + K E + KP+ LSGG ++++++A A+ +PPI++ DEP+ +D
Sbjct: 120 ERRKRALECLKXAELEERFANHKPN-QLSGGQQQRVAIARALANNPPIILADEPTGALDS 178
Query: 1525 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1557
+ +++ +L+ GKT V++ TH +N A+
Sbjct: 179 KTGEKIXQLLKKLNEEDGKT-VVVVTHDINVAR 210
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 56/230 (24%), Positives = 107/230 (46%), Gaps = 24/230 (10%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+++ + K Y A+ ++ L + E + +++ G +G+GKST ++++ L PT G+
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 510 ALVFGKNI-TADMDE------IRKGLGVCPQYDILFPELTVREHLEMFAVLK-------- 554
V+ NI T D+D+ R +G Q L P LT E++E+ + K
Sbjct: 62 --VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE 119
Query: 555 GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 614
++ LE + ++E K N LSGG ++++++ AL + +++ DEPT
Sbjct: 120 ERRKRALECLKXAELEERFANHKPN----QLSGGQQQRVAIARALANNPPIILADEPTGA 175
Query: 615 MDPYSMRLTWQXXXXXXXX--XXXXXTTHSMDEAEELGDRIAIMANGSLK 662
+D + Q TH ++ A G+RI + +G ++
Sbjct: 176 LDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE 224
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 113/214 (52%), Gaps = 14/214 (6%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
++ L+N+ K Y G+ + A+ ++ +++ GE +G +G+GK+T L++I + PT
Sbjct: 1 MVKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT 58
Query: 1414 DGTAFIFG---KDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHLEL-----YARIKGV 1463
+G +I D+ D K R IG+ Q L+ LT E++EL Y
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 1464 AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
E R + K+ E + KP+ LSGG ++++++A A+ +PPI++ D+P+ +D
Sbjct: 119 EERRKRALECLKMAELEERFANHKPN-QLSGGQQQRVAIARALANNPPIILADQPTWALD 177
Query: 1524 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1557
+ +++ +L+ GKT V++ TH +N A+
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKT-VVVVTHDINVAR 210
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 106/226 (46%), Gaps = 16/226 (7%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++++ + K Y A+ ++ L + E + ++++G +G+GKST ++++ L PT G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 510 ALVFGKNI-TADMDE------IRKGLGVCPQYDILFPELTVREHLEMFAVLK---GVKEE 559
V+ NI T D+D+ R +G Q L P LT E++E+ + K + E
Sbjct: 62 --VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 560 LLESVVAEMVDEVGLADK-VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 618
E + L ++ N LSGG ++++++ AL + +++ D+PT +D
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSK 179
Query: 619 SMRLTWQ--XXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLK 662
+ Q TH ++ A G+RI + +G ++
Sbjct: 180 TGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE 224
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 81.3 bits (199), Expect = 5e-15, Method: Composition-based stats.
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 6/170 (3%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++++ LH Y G A+ + L + QI+ L+G NGAGK+TT+S + GL+ G
Sbjct: 7 LEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
Query: 510 ALVFGKNITADMDEI--RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE 567
+ G++IT + R G+ + P+ +FPELTV E+L A + KE + +
Sbjct: 63 IIFNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWI 122
Query: 568 MVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
L +++ + LSGG ++ L++G AL K++ DEP+ G+ P
Sbjct: 123 FSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAP 172
Score = 73.9 bits (180), Expect = 6e-13, Method: Composition-based stats.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 3/181 (1%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA--R 1432
A+ + V G+ +G NGAGKTTTLS I+G G G+DI + P R
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTL 1492
I P+ + LTV E+L A + E D+ + L + K+ TL
Sbjct: 81 XGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTL 140
Query: 1493 SGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHS 1552
SGG ++ L++ A+ P ++ DEPS G+ PI ++EVI +++ ++G T +++ ++
Sbjct: 141 SGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKIN-QEGTTILLVEQNA 199
Query: 1553 M 1553
+
Sbjct: 200 L 200
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 80.5 bits (197), Expect = 8e-15, Method: Composition-based stats.
Identities = 56/212 (26%), Positives = 108/212 (50%), Gaps = 10/212 (4%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRL 1434
++ ++ + +GE +G NGAGK+T L +++G P+ G + G+++ S PKA R
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSG 1494
Q+ L +V E +++ G ++ R + + + + D L A++ LSG
Sbjct: 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDR--QALQQVMAQTDCLALAQRDYRVLSG 144
Query: 1495 GNKRKLSVA--IAMIGDP-PI---VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1548
G ++++ +A +A + P P + LDEP++ +D ++ ++ +L TRQ AV
Sbjct: 145 GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQL-TRQEPLAVCC 203
Query: 1549 TTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
H +N A RI ++ G+L G+P+ +
Sbjct: 204 VLHDLNLAALYADRIMLLAQGKLVACGTPEEV 235
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 19/211 (9%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527
+N + L + +++A++G NGAGKST + +L G + P+ G+ + G+N+ + + +
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKE--ELLESVVAEMVDEVGLADKVNIVVRAL 585
V QY L +V E ++M G + + L+ V+A+ D + LA + R L
Sbjct: 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQ-TDCLALAQR---DYRVL 142
Query: 586 SGGMKRKLSLGIALIG------DSKVVILDEPTSGMDPY----SMRLTWQXXXXXXXXXX 635
SGG ++++ L L + + LDEPTS +D Y ++RL Q
Sbjct: 143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQ--LTRQEPLA 200
Query: 636 XXXTTHSMDEAEELGDRIAIMANGSLKCCGS 666
H ++ A DRI ++A G L CG+
Sbjct: 201 VCCVLHDLNLAALYADRIMLLAQGKLVACGT 231
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 78.6 bits (192), Expect = 3e-14, Method: Composition-based stats.
Identities = 55/180 (30%), Positives = 95/180 (52%), Gaps = 5/180 (2%)
Query: 484 LLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTV 543
LLG GAGKS + ++ G++ P G+ + G +IT E R+G+G PQ LFP L+V
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE-RRGIGFVPQDYALFPHLSV 87
Query: 544 REHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 603
++ L+ V+ + V EM +++G+A ++ LSGG +++++L AL+
Sbjct: 88 YRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP 145
Query: 604 KVVILDEPTSGMDPYSMRLTWQXXXXXXXX--XXXXXTTHSMDEAEELGDRIAIMANGSL 661
++++LDEP S +D + + + TH + EA L D +A+M NG +
Sbjct: 146 RLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRI 205
Score = 77.0 bits (188), Expect = 8e-14, Method: Composition-based stats.
Identities = 58/182 (31%), Positives = 93/182 (51%), Gaps = 6/182 (3%)
Query: 1391 FLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTV 1450
LG GAGK+ L +I+G P G + G DI P RR IG+ PQ AL +L+V
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP-PERRGIGFVPQDYALFPHLSV 87
Query: 1451 QEHLELYARIKGVAEYRMDDVVM-EKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509
++ R E M EKL LL +KP+ LSGG ++++++A A++
Sbjct: 88 YRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD--RKPA-RLSGGERQRVALARALVIQ 144
Query: 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1569
P +++LDEP + +D K + E + R R+ ++ TH + EA L + +M+ G
Sbjct: 145 PRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNG 203
Query: 1570 QL 1571
++
Sbjct: 204 RI 205
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 127/255 (49%), Gaps = 20/255 (7%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
+N+ YP R + ++ + L V++G+ +G +G GK+TT+ ++ P DG
Sbjct: 390 FKNIHFSYP--SRKEVQI-LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM 446
Query: 1417 AFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYAR--------IKGVAEYR 1467
I G+DIR+ + + R +IG Q + +L T+ E++ Y R K V E
Sbjct: 447 VSIDGQDIRTINVRYLREIIGVVSQ-EPVLFATTIAENIR-YGREDVTMDEIEKAVKEAN 504
Query: 1468 MDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527
D +M+ +FD L + LSGG K+++++A A++ +P I++LDE ++ +D ++
Sbjct: 505 AYDFIMKLPHQFDTLVGERGAQ--LSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNF 1587
+ + + R+G+T +++ H ++ + I GG + G+ L G +
Sbjct: 563 AVVQAALDK--AREGRTTIVI-AHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMREKGIY 618
Query: 1588 LELEVKPTEVSSVDL 1602
+L + T + ++L
Sbjct: 619 FKLVMTQTAGNEIEL 633
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 14/238 (5%)
Query: 463 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM 521
R + + L L + + Q LAL+G +G GKST + +L P G + GK I ++
Sbjct: 1043 RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV 1102
Query: 522 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELL----ESVVAEMVDEVGLAD 576
+R LG+ Q ILF + ++ E++ + V EE++ E+ + + +D L D
Sbjct: 1103 QWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDS--LPD 1159
Query: 577 KVNIVV----RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXX 632
K N V LSGG K+++++ AL+ +++LDE TS +D S ++ +
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219
Query: 633 XXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPDAS 690
H + + D I ++ NG +K G+ L Q G+ +++ V++ S
Sbjct: 1220 GRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 25/253 (9%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++ + +H Y +++ + L L + Q +AL+G++G GKSTT+ ++ L P G
Sbjct: 388 LEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM 446
Query: 510 ALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTV------REHLEMFAVLKGVKEELLE 562
+ G++I T ++ +R+ +GV Q +LF RE + M + K VKE
Sbjct: 447 VSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAY 506
Query: 563 SVVAE-------MVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 615
+ + +V E G LSGG K+++++ AL+ + K+++LDE TS +
Sbjct: 507 DFIMKLPHQFDTLVGERGA---------QLSGGQKQRIAIARALVRNPKILLLDEATSAL 557
Query: 616 DPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675
D S + H + D IA G + G+ L + G
Sbjct: 558 DTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMREKG 616
Query: 676 VGYTLTLVKSAPD 688
+ + L + ++A +
Sbjct: 617 IYFKLVMTQTAGN 629
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 114/223 (51%), Gaps = 13/223 (5%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRL 1434
+ L+ V+ G+ +G++G GK+T + ++ P G+ F+ GK+I+ + + R
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108
Query: 1435 IGYCPQ----FD-ALLEYLTVQEHLEL--YARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1487
+G Q FD ++ E + ++ + Y I A+ ++ L + + K
Sbjct: 1109 LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168
Query: 1488 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1547
+ LSGG K+++++A A++ P I++LDE ++ +D +++ + E + + R+G+T ++
Sbjct: 1169 GT-QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK--AREGRTCIV 1225
Query: 1548 LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
+ H ++ Q I ++ G+++ G+ Q L + G + +
Sbjct: 1226 I-AHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQKGIYFSM 1266
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 127/255 (49%), Gaps = 20/255 (7%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
+N+ YP R + ++ + L V++G+ +G +G GK+TT+ ++ P DG
Sbjct: 390 FKNIHFSYP--SRKEVQI-LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM 446
Query: 1417 AFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYAR--------IKGVAEYR 1467
I G+DIR+ + + R +IG Q + +L T+ E++ Y R K V E
Sbjct: 447 VSIDGQDIRTINVRYLREIIGVVSQ-EPVLFATTIAENIR-YGREDVTMDEIEKAVKEAN 504
Query: 1468 MDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527
D +M+ +FD L + LSGG K+++++A A++ +P I++LDE ++ +D ++
Sbjct: 505 AYDFIMKLPHQFDTLVGERGAQ--LSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNF 1587
+ + + R+G+T +++ H ++ + I GG + G+ L G +
Sbjct: 563 AVVQAALDK--AREGRTTIVI-AHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMREKGIY 618
Query: 1588 LELEVKPTEVSSVDL 1602
+L + T + ++L
Sbjct: 619 FKLVMTQTAGNEIEL 633
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 14/238 (5%)
Query: 463 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM 521
R + + L L + + Q LAL+G +G GKST + +L P G + GK I ++
Sbjct: 1043 RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV 1102
Query: 522 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELL----ESVVAEMVDEVGLAD 576
+R LG+ Q ILF + ++ E++ + V EE++ E+ + + +D L D
Sbjct: 1103 QWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDS--LPD 1159
Query: 577 KVNIVV----RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXX 632
K N V LSGG K+++++ AL+ +++LDE TS +D S ++ +
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219
Query: 633 XXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPDAS 690
H + + D I ++ NG +K G+ L Q G+ +++ V++ S
Sbjct: 1220 GRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 112/246 (45%), Gaps = 11/246 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++ + +H Y +++ + L L + Q +AL+G++G GKSTT+ ++ L P G
Sbjct: 388 LEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM 446
Query: 510 ALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTV------REHLEMFAVLKGVKEELLE 562
+ G++I T ++ +R+ +GV Q +LF RE + M + K VKE
Sbjct: 447 VSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAY 506
Query: 563 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
+ ++ + V LSGG K+++++ AL+ + K+++LDE TS +D S +
Sbjct: 507 DFIMKLPHQ--FDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 623 TWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTL 682
H + D IA G + G+ L + G+ + L +
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMREKGIYFKLVM 623
Query: 683 VKSAPD 688
++A +
Sbjct: 624 TQTAGN 629
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 114/223 (51%), Gaps = 13/223 (5%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRL 1434
+ L+ V+ G+ +G++G GK+T + ++ P G+ F+ GK+I+ + + R
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108
Query: 1435 IGYCPQ----FD-ALLEYLTVQEHLEL--YARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1487
+G Q FD ++ E + ++ + Y I A+ ++ L + + K
Sbjct: 1109 LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168
Query: 1488 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1547
+ LSGG K+++++A A++ P I++LDE ++ +D +++ + E + + R+G+T ++
Sbjct: 1169 GT-QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK--AREGRTCIV 1225
Query: 1548 LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
+ H ++ Q I ++ G+++ G+ Q L + G + +
Sbjct: 1226 I-AHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQKGIYFSM 1266
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 8/201 (3%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432
K A+ +++ + GEC G G+GK+T L +++G PT G G+ R R
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE--RKKGYEIR 77
Query: 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF---DLLKHAKKPS 1489
R IG Q+ ++ + E+ +K R +++K +EF D +
Sbjct: 78 RNIGIAFQYPED-QFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP 136
Query: 1490 FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILT 1549
F LSGG KR++++A ++ +P I+ILDEP G+D K + ++ + T GKT VIL
Sbjct: 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT-LGKT-VILI 194
Query: 1550 THSMNEAQALCTRIGIMVGGQ 1570
+H + R+ ++ G+
Sbjct: 195 SHDIETVINHVDRVVVLEKGK 215
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 14/156 (8%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
A+ ++ L + E + L + G+ G+GKST + ++ GLI PT+GD L G+ EIR+
Sbjct: 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG--YEIRRN 79
Query: 528 LGVCPQY--DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL-----ADKVNI 580
+G+ QY D F E E FAV + +V + ++ VGL D+V
Sbjct: 80 IGIAFQYPEDQFFAERVFDEV--AFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF 137
Query: 581 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
LSGG KR++++ ++ + ++ILDEP G+D
Sbjct: 138 F---LSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 75.1 bits (183), Expect = 3e-13, Method: Composition-based stats.
Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 17/217 (7%)
Query: 1367 GKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGK---D 1423
G+ K + +++ + G+ + G NGAGKTT L++++ E T GT +FGK
Sbjct: 28 GRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGK 87
Query: 1424 IRSDPKAARRLIGYCPQFDALLEYLTVQEHL---ELYARIKGVAEYR-MDDVVMEKLVEF 1479
+ + R+ IG+ +LLE E + + K + Y+ +DD + +
Sbjct: 88 VGYSAETVRQHIGFVSH--SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE--AH 143
Query: 1480 DLLK----HAKKPSFT--LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1533
LLK AK + LS G K+++ +A A+ G P ++ILDEP+ G+D IA+ + +
Sbjct: 144 QLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSI 203
Query: 1534 ISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1570
+ LS A I TH + E A ++I ++ GQ
Sbjct: 204 LDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQ 240
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 13/144 (9%)
Query: 484 LLGHNGAGKSTTISMLVGLIPPTTGDALVFGK---NITADMDEIRKGLGVCPQYDIL--F 538
L G NGAGK+T +++L P T+G +FGK + + +R+ +G + +L F
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVRQHIGFV-SHSLLEKF 110
Query: 539 PE------LTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRK 592
E + + + V + + +E+ + +++ VG + K + LS G K++
Sbjct: 111 QEGERVIDVVISGAFKSIGVYQDIDDEI-RNEAHQLLKLVGXSAKAQQYIGYLSTGEKQR 169
Query: 593 LSLGIALIGDSKVVILDEPTSGMD 616
+ + AL G +V+ILDEP +G+D
Sbjct: 170 VXIARALXGQPQVLILDEPAAGLD 193
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 8/201 (3%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432
K A+ +++ + GEC G G+GK+T L +++G PT G G+ R R
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE--RKKGYEIR 79
Query: 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF---DLLKHAKKPS 1489
R IG Q+ ++ + E+ +K R +++K +EF D +
Sbjct: 80 RNIGIAFQYPED-QFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP 138
Query: 1490 FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILT 1549
F LSGG KR++++A ++ +P I+ILDEP G+D K + ++ + T GKT VIL
Sbjct: 139 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT-LGKT-VILI 196
Query: 1550 THSMNEAQALCTRIGIMVGGQ 1570
+H + R+ ++ G+
Sbjct: 197 SHDIETVINHVDRVVVLEKGK 217
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 14/156 (8%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
A+ ++ L + E + L + G+ G+GKST + ++ GLI PT+GD L G+ EIR+
Sbjct: 24 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG--YEIRRN 81
Query: 528 LGVCPQY--DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL-----ADKVNI 580
+G+ QY D F E E FAV + +V + ++ VGL D+V
Sbjct: 82 IGIAFQYPEDQFFAERVFDEV--AFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF 139
Query: 581 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
LSGG KR++++ ++ + ++ILDEP G+D
Sbjct: 140 F---LSGGEKRRVAIASVIVHEPDILILDEPLVGLD 172
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 123/259 (47%), Gaps = 25/259 (9%)
Query: 1370 SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPK 1429
SD A+ + +++ GE LG NG GK+T +G P+ G K I K
Sbjct: 18 SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK 77
Query: 1430 AARRL---IGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL---- 1481
+L IG Q D L +V + + G ++ + + K V+ L
Sbjct: 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSF-----GAVNMKLPEDEIRKRVDNALKRTG 132
Query: 1482 LKHAK-KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTR 1540
++H K KP+ LS G K+++++A ++ +P ++ILDEP+ G+DP+ + +++ +
Sbjct: 133 IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 1541 QGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV-KPTEVSS 1599
G T +I+ TH ++ C + +M G++ G+P+ + F E EV + +
Sbjct: 193 LGIT-IIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV------FAEKEVIRKVNLRL 245
Query: 1600 VDLEDLCQIIQER---VFD 1615
+ L +I++E+ VFD
Sbjct: 246 PRIGHLMEILKEKDGFVFD 264
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 10/207 (4%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT---ADMDEI 524
A+ + + + ++ A+LG NG GKST G++ P++G L K I + ++
Sbjct: 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKL 82
Query: 525 RKGLGVCPQY-DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 583
R+ +G+ Q D +V + + AV + E+ + V + G+ +
Sbjct: 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTH 142
Query: 584 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS----MRLTWQXXXXXXXXXXXXXT 639
LS G K+++++ L+ + KV+ILDEPT+G+DP M+L +
Sbjct: 143 CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE--MQKELGITIIIA 200
Query: 640 THSMDEAEELGDRIAIMANGSLKCCGS 666
TH +D D + +M G + G+
Sbjct: 201 THDIDIVPLYCDNVFVMKEGRVILQGN 227
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 8/210 (3%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD----PKAA 1431
++ ++ S+ GE +G +G GKTT L ++G E P G + GK I S P
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH-AKKPSF 1490
RRL GY Q L +LTV ++ Y G + +E ++E + A +
Sbjct: 80 RRL-GYLVQEGVLFPHLTVYRNIA-YGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH 137
Query: 1491 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTT 1550
LSGG +++ ++A A+ DP +++LDEP + +D +R + E + GK+AV + +
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFV-S 196
Query: 1551 HSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
H EA RI +M G++ SP L
Sbjct: 197 HDREEALQYADRIAVMKQGRILQTASPHEL 226
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 11/217 (5%)
Query: 465 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD-----ALVFGKNITA 519
N +N + L+L +IL ++G +G GK+T + L G P +G+ +F KN
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 520 DMDEIRKGLGVCPQYDILFPELTVREHLEM-FAVLKGVKEELLESVVAEMVDEVGLADKV 578
+ E R LG Q +LFP LTV ++ KG + + + A M++ G+++
Sbjct: 76 PVRERR--LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEA-MLELTGISELA 132
Query: 579 NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXX 638
LSGG +++ +L AL D ++++LDEP S +D R +
Sbjct: 133 GRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSA 192
Query: 639 --TTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673
+H +EA + DRIA+M G + S L Q
Sbjct: 193 VFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/209 (23%), Positives = 102/209 (48%), Gaps = 13/209 (6%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
I+ N++KV G + + ++ SV+ GE +G +G+GK+T L ++ + PT
Sbjct: 4 ILRAENIKKVIRGYE------ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT 57
Query: 1414 DGTAFIFGKDIRSDPKAA-----RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1468
+G F+ GK++ + R +G+ QF L+ LT E++ + G +
Sbjct: 58 EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEA 117
Query: 1469 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1528
+ L E L + + LSGG ++++++A A+ +P ++ DEP+ +D +
Sbjct: 118 KERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177
Query: 1529 FMWEVISRLSTRQGKTAVILTTHSMNEAQ 1557
+ ++ L +G T++++ TH A+
Sbjct: 178 RVMDIF--LKINEGGTSIVMVTHERELAE 204
Score = 65.1 bits (157), Expect = 3e-10, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 92/174 (52%), Gaps = 12/174 (6%)
Query: 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT 507
R I+K+ + Y +G + L++ + + ++++G +G+GKST + +L L PT
Sbjct: 6 RAENIKKVIRGYEILKG-------ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE 58
Query: 508 GDALVFGKNI----TADMDEIR-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLE 562
G + GK + ++ +R + LG Q+ L PELT E++ + + G ++ +
Sbjct: 59 GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK 118
Query: 563 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
++ E+GL DK++ LSGG ++++++ AL + ++ DEPT +D
Sbjct: 119 ERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLD 172
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 114/238 (47%), Gaps = 27/238 (11%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I RN+R Y + D+ V + ++ S++ GE G +G +G+GK+T +I P +
Sbjct: 4 ITFRNIRFRY----KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 59
Query: 1415 GTAFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1462
G I G D+ +DP RR +G Q + LL + E + A++ G
Sbjct: 60 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 119
Query: 1463 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1522
D + E ++ + + LSGG ++++++A A++ +P I+I DE ++ +
Sbjct: 120 A-----HDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 172
Query: 1523 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
D ++ + + ++ +G+T VI+ H ++ + RI +M G++ G + L
Sbjct: 173 DYESEHVIMRNMHKIC--KGRT-VIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKEL 226
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 100/199 (50%), Gaps = 8/199 (4%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 527
++++ L++ + +++ ++G +G+GKST ++ P G L+ G ++ AD + +R+
Sbjct: 21 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVV---- 582
+GV Q ++L ++ +++ + V++ + + +A D + L + N +V
Sbjct: 81 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 139
Query: 583 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHS 642
LSGG ++++++ AL+ + K++I DE TS +D S + + H
Sbjct: 140 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHR 199
Query: 643 MDEAEELGDRIAIMANGSL 661
+ + DRI +M G +
Sbjct: 200 LSTVKN-ADRIIVMEKGKI 217
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 114/238 (47%), Gaps = 27/238 (11%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I RN+R Y + D+ V + ++ S++ GE G +G +G+GK+T +I P +
Sbjct: 2 ITFRNIRFRY----KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 57
Query: 1415 GTAFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1462
G I G D+ +DP RR +G Q + LL + E + A++ G
Sbjct: 58 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 117
Query: 1463 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1522
D + E ++ + + LSGG ++++++A A++ +P I+I DE ++ +
Sbjct: 118 A-----HDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 170
Query: 1523 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
D ++ + + ++ +G+T VI+ H ++ + RI +M G++ G + L
Sbjct: 171 DYESEHVIMRNMHKIC--KGRT-VIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKEL 224
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 100/199 (50%), Gaps = 8/199 (4%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 527
++++ L++ + +++ ++G +G+GKST ++ P G L+ G ++ AD + +R+
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVV---- 582
+GV Q ++L ++ +++ + V++ + + +A D + L + N +V
Sbjct: 79 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 137
Query: 583 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHS 642
LSGG ++++++ AL+ + K++I DE TS +D S + + H
Sbjct: 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHR 197
Query: 643 MDEAEELGDRIAIMANGSL 661
+ + DRI +M G +
Sbjct: 198 LSTVKN-ADRIIVMEKGKI 215
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 114/238 (47%), Gaps = 27/238 (11%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I RN+R Y + D+ V + ++ S++ GE G +G +G+GK+T +I P +
Sbjct: 8 ITFRNIRFRY----KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1415 GTAFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1462
G I G D+ +DP RR +G Q + LL + E + A++ G
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 123
Query: 1463 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1522
D + E ++ + + LSGG ++++++A A++ +P I+I DE ++ +
Sbjct: 124 A-----HDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 176
Query: 1523 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
D ++ + + ++ +G+T VI+ H ++ + RI +M G++ G + L
Sbjct: 177 DYESEHVIMRNMHKIC--KGRT-VIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKEL 230
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 100/199 (50%), Gaps = 8/199 (4%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 527
++++ L++ + +++ ++G +G+GKST ++ P G L+ G ++ AD + +R+
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVV---- 582
+GV Q ++L ++ +++ + V++ + + +A D + L + N +V
Sbjct: 85 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 143
Query: 583 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHS 642
LSGG ++++++ AL+ + K++I DE TS +D S + + H
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHR 203
Query: 643 MDEAEELGDRIAIMANGSL 661
+ + DRI +M G +
Sbjct: 204 LSTVKN-ADRIIVMEKGKI 221
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 6/186 (3%)
Query: 1369 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP 1428
R + + + + G+ + +G NG+GKTT L +++G G F+ G +DP
Sbjct: 20 RYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGL-LAAAGEIFLDGSP--ADP 76
Query: 1429 KAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1487
R+ +GY Q + + TV+E + I G+ E M + + L L A
Sbjct: 77 FLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAA 136
Query: 1488 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1547
LSGG K++L++A + D + LDEP + +DP ++R +++V+ L +GK +I
Sbjct: 137 DPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKN-EGK-GII 194
Query: 1548 LTTHSM 1553
L TH +
Sbjct: 195 LVTHEL 200
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 480 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC---PQYDI 536
+I ++G NG+GK+T + +L GL+ +F AD +RK +G P I
Sbjct: 38 KIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKNVGYVFQNPSSQI 94
Query: 537 LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLG 596
+ TV E + + G+ E + + ++++ VGL+ LSGG K++L++
Sbjct: 95 IGA--TVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIA 152
Query: 597 IALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXX-XXXXXTTHSMDEAEELGDRIAI 655
L D++ + LDEP S +DP S R +Q TH ++ +++ D I
Sbjct: 153 SMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDM-DFILH 211
Query: 656 MANGSLKCCGS 666
++NG++ CGS
Sbjct: 212 ISNGTIDFCGS 222
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 34/223 (15%)
Query: 1377 HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIG 1436
L F + G+ LG NG GK+T L ++ G P G ++ IG
Sbjct: 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQS------------IG 69
Query: 1437 YCPQF----------DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK 1486
+ PQF D +L + H+ +A+ K +Y+ V M+ L +L AK
Sbjct: 70 FVPQFFSSPFAYSVLDIVL--MGRSTHINTFAKPKS-HDYQ---VAMQALDYLNLTHLAK 123
Query: 1487 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1546
+ +LSGG ++ + +A A+ + +++LDEP++ +D + + ++ L+ Q T V
Sbjct: 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT-V 182
Query: 1547 ILTTHSMNEAQALCTRIGIMVG-----GQLRCIGSPQHLKTRF 1584
+ TTH N+ A+ + ++ G+ R I + ++L F
Sbjct: 183 VFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTSENLTALF 225
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 24/153 (15%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 531
L L + ILA+LG NG GKST + +L+G+ P G E+ + +G
Sbjct: 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI------------EVYQSIGFV 71
Query: 532 PQ-------YDILFPELTVRE-HLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 583
PQ Y +L L R H+ FA K + V + +D + L
Sbjct: 72 PQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ----VAMQALDYLNLTHLAKREFT 127
Query: 584 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
+LSGG ++ + + A+ + K+++LDEPTS +D
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALD 160
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 128/250 (51%), Gaps = 22/250 (8%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ +N+R YP +R + ++ + L+FSV+ G+ +G +G GK+T ++++
Sbjct: 1077 VIFKNVRFAYP--ERPEIEI-LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG 1133
Query: 1415 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELY---------ARIKGVA 1464
G FI G +I++ +P+ R I Q L + ++ E++ +Y A+++ A
Sbjct: 1134 GEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENI-IYGLDPSSVTMAQVEEAA 1191
Query: 1465 EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1524
+ +L E + + + LSGG K+++++A A++ +P I++LDE ++ +D
Sbjct: 1192 RLANIHNFIAELPEGFETRVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDT 1250
Query: 1525 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEA-QALCTRIGIMVGGQLRCIGSPQHLKTR 1583
+++ + E + R R+G+T +++ H +N A C I ++ G + G+ L +
Sbjct: 1251 ESEKVVQEALDR--AREGRTCIVI-AHRLNTVMNADC--IAVVSNGTIIEKGTHTQLMSE 1305
Query: 1584 FGNFLELEVK 1593
G + +L K
Sbjct: 1306 KGAYYKLTQK 1315
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 123/259 (47%), Gaps = 16/259 (6%)
Query: 433 VEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGK 492
++++SL +++++ G+ I + + Y +R + L ++ Q LAL+G +G GK
Sbjct: 1061 IDSLSLAGEKKKLYGKVI-FKNVRFAYP-ERPEIEILKGLSFSVEPGQTLALVGPSGCGK 1118
Query: 493 STTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHL---- 547
ST +++L G+ + G I T + + R + + Q LF + ++ E++
Sbjct: 1119 STVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF-DCSIAENIIYGL 1177
Query: 548 -----EMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 602
M V + + + + +AE+ + G +V LSGG K+++++ AL+ +
Sbjct: 1178 DPSSVTMAQVEEAARLANIHNFIAELPE--GFETRVGDRGTQLSGGQKQRIAIARALVRN 1235
Query: 603 SKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLK 662
K+++LDE TS +D S ++ + H ++ D IA+++NG++
Sbjct: 1236 PKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTII 1294
Query: 663 CCGSSLFLKHQYGVGYTLT 681
G+ L + G Y LT
Sbjct: 1295 EKGTHTQLMSEKGAYYKLT 1313
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 126/273 (46%), Gaps = 15/273 (5%)
Query: 430 EPVVEAIS-LDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHN 488
+PV+++ S K ++ G I + +H Y + R + + + L + Q +AL+G +
Sbjct: 396 KPVIDSSSKAGRKDMKIKGD-ITVENVHFTYPS-RPDVPILRGMNLRVNAGQTVALVGSS 453
Query: 489 GAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHL 547
G GKST IS+L+ G + G ++ +++ +RK + V Q LF T+ E++
Sbjct: 454 GCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALF-NCTIEENI 512
Query: 548 EMFAVLKGV-KEELLESVVAEMVDEV--GLADKVNIVV----RALSGGMKRKLSLGIALI 600
+ +G+ +EE++ + ++ L + N +V LSGG K+++++ AL+
Sbjct: 513 SLGK--EGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570
Query: 601 GDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGS 660
+ K+++LDE TS +D S + Q H + D I NG
Sbjct: 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRN-ADLIISCKNGQ 629
Query: 661 LKCCGSSLFLKHQYGVGYTLTLVKSAPDASAAA 693
+ G L Q G+ Y L ++ DA +A
Sbjct: 630 VVEVGDHRALMAQQGLYYDLVTAQTFTDAVDSA 662
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 138/294 (46%), Gaps = 39/294 (13%)
Query: 1318 EPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVH 1377
+P++ SSS++ D+ D+ VE N+ YP R D + +
Sbjct: 396 KPVIDSSSKAGRKDMKIKGDITVE-----------------NVHFTYP--SRPDVPI-LR 435
Query: 1378 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIG 1436
+ V AG+ +G++G GK+T +S++ G I G D+R + + R+ +
Sbjct: 436 GMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVA 495
Query: 1437 YCPQFDALLEYLTVQEHLEL----YARIKGVAEYRMDDVVMEKLVE-----FDLLKHAKK 1487
Q AL T++E++ L R + VA +M + EK ++ ++ L +
Sbjct: 496 VVSQEPALFN-CTIEENISLGKEGITREEMVAACKMANA--EKFIKTLPNGYNTLVGDRG 552
Query: 1488 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1547
LSGG K+++++A A++ +P I++LDE ++ +D ++ + + + + + +G+T +I
Sbjct: 553 TQ--LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTII 608
Query: 1548 LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVD 1601
+ H ++ + I GQ+ +G + L + G + +L T +VD
Sbjct: 609 I-AHRLSTIRNADLIISCK-NGQVVEVGDHRALMAQQGLYYDLVTAQTFTDAVD 660
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 113/238 (47%), Gaps = 27/238 (11%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I RN+R Y + D+ V + ++ S++ GE G +G G+GK+T +I P +
Sbjct: 4 ITFRNIRFRY----KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPEN 59
Query: 1415 GTAFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1462
G I G D+ +DP RR +G Q + LL + E + A++ G
Sbjct: 60 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 119
Query: 1463 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1522
D + E ++ + + LSGG ++++++A A++ +P I+I DE ++ +
Sbjct: 120 A-----HDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 172
Query: 1523 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
D ++ + + ++ +G+T VI+ H ++ + RI +M G++ G + L
Sbjct: 173 DYESEHVIMRNMHKIC--KGRT-VIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKEL 226
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 99/199 (49%), Gaps = 8/199 (4%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 527
++++ L++ + +++ ++G G+GKST ++ P G L+ G ++ AD + +R+
Sbjct: 21 LDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVV---- 582
+GV Q ++L ++ +++ + V++ + + +A D + L + N +V
Sbjct: 81 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 139
Query: 583 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHS 642
LSGG ++++++ AL+ + K++I DE TS +D S + + H
Sbjct: 140 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHR 199
Query: 643 MDEAEELGDRIAIMANGSL 661
+ + DRI +M G +
Sbjct: 200 LSTVKN-ADRIIVMEKGKI 217
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 114/238 (47%), Gaps = 27/238 (11%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I RN+R Y + D+ V + ++ S++ GE G +G +G+GK+T +I P +
Sbjct: 8 ITFRNIRFRY----KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1415 GTAFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1462
G I G D+ +DP RR +G Q + LL + E + A++ G
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 123
Query: 1463 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1522
D + E ++ + + LSGG ++++++A A++ +P I+I D+ ++ +
Sbjct: 124 A-----HDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSAL 176
Query: 1523 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
D ++ + + ++ +G+T VI+ H ++ + RI +M G++ G + L
Sbjct: 177 DYESEHVIMRNMHKIC--KGRT-VIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKEL 230
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 100/199 (50%), Gaps = 8/199 (4%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 527
++++ L++ + +++ ++G +G+GKST ++ P G L+ G ++ AD + +R+
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVV---- 582
+GV Q ++L ++ +++ + V++ + + +A D + L + N +V
Sbjct: 85 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 143
Query: 583 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHS 642
LSGG ++++++ AL+ + K++I D+ TS +D S + + H
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIIIAHR 203
Query: 643 MDEAEELGDRIAIMANGSL 661
+ + DRI +M G +
Sbjct: 204 LSTVKN-ADRIIVMEKGKI 221
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 111/238 (46%), Gaps = 27/238 (11%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I RN+R Y + D+ V + ++ S++ GE G +G +G+GK+T +I P +
Sbjct: 2 ITFRNIRFRY----KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 57
Query: 1415 GTAFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1462
G I G D+ +DP RR +G Q + LL + E + A++ G
Sbjct: 58 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 117
Query: 1463 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1522
D + E ++ + + LSGG ++++++A A++ +P I+I DE ++ +
Sbjct: 118 A-----HDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 170
Query: 1523 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
D ++ + + ++ +G+T +I+ A RI +M G++ G + L
Sbjct: 171 DYESEHVIMRNMHKIC--KGRTVIIIAARLSTVKNA--DRIIVMEKGKIVEQGKHKEL 224
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 87/154 (56%), Gaps = 7/154 (4%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 527
++++ L++ + +++ ++G +G+GKST ++ P G L+ G ++ AD + +R+
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVV---- 582
+GV Q ++L ++ +++ + V++ + + +A D + L + N +V
Sbjct: 79 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 137
Query: 583 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
LSGG ++++++ AL+ + K++I DE TS +D
Sbjct: 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALD 171
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 111/238 (46%), Gaps = 27/238 (11%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I RN+R Y + D+ V + ++ S++ GE G +G +G+GK+T +I P +
Sbjct: 8 ITFRNIRFRY----KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1415 GTAFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1462
G I G D+ +DP RR +G Q + LL + E + A++ G
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 123
Query: 1463 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1522
D + E ++ + + LSGG ++++++A A++ +P I+I DE ++ +
Sbjct: 124 A-----HDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 176
Query: 1523 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
D ++ + + ++ +G+T +I+ A RI +M G++ G + L
Sbjct: 177 DYESEHVIMRNMHKIC--KGRTVIIIAARLSTVKNA--DRIIVMEKGKIVEQGKHKEL 230
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 87/154 (56%), Gaps = 7/154 (4%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 527
++++ L++ + +++ ++G +G+GKST ++ P G L+ G ++ AD + +R+
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVV---- 582
+GV Q ++L ++ +++ + V++ + + +A D + L + N +V
Sbjct: 85 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 143
Query: 583 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
LSGG ++++++ AL+ + K++I DE TS +D
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 10/162 (6%)
Query: 462 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D 520
K+ N + S+ + AL+GH G+GKST I+ L+ GD + GKN+ +
Sbjct: 29 KQTNHRTLKSINFFIPSGTTCALVGHTGSGKST-IAKLLYRFYDAEGDIKIGGKNVNKYN 87
Query: 521 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-VAEMVDEV-GLADKV 578
+ IR +G+ PQ ILF E T++ ++ ++ L EE++++ A++ D + L K
Sbjct: 88 RNSIRSIIGIVPQDTILFNE-TIKYNI-LYGKLDATDEEVIKATKSAQLYDFIEALPKKW 145
Query: 579 NIVV----RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
+ +V LSGG ++++++ L+ D K+VI DE TS +D
Sbjct: 146 DTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLD 187
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 90/182 (49%), Gaps = 16/182 (8%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI-RSDPKAARRL 1434
+ S+ F + +G +G G+GK+T ++ Y +G I GK++ + + + R +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGGKNVNKYNRNSIRSI 94
Query: 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF--------DLLKHAK 1486
IG PQ D +L T++ ++ LY ++ E + +L +F D + K
Sbjct: 95 IGIVPQ-DTILFNETIKYNI-LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNK 152
Query: 1487 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1546
LSGG ++++++A ++ DP IVI DE ++ +D + + + L R+ +T +
Sbjct: 153 --GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL--RKNRTLI 208
Query: 1547 IL 1548
I+
Sbjct: 209 II 210
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 27/166 (16%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1489
+C QF ++ T++E++ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 102 SFCSQFSWIMPG-TIKENI-----IAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 1490 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
TLSGG + ++S+A A+ D + +LD P +D + ++ ++E
Sbjct: 156 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 201
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 91/201 (45%), Gaps = 27/201 (13%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528
+ + + Q+LA+ G GAGK++ + M++G + P+ G G+ +
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 529 GVCPQYDILFPELTVREHLEMFAVLKGVK--EELLESVVA--EMVDEVG-LADKVNIVVR 583
C Q+ + P T++E+ ++ GV E SV+ ++ +++ A+K NIV+
Sbjct: 102 SFCSQFSWIMPG-TIKEN-----IIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 584 ----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT 639
LSGG + ++SL A+ D+ + +LD P +D + + ++
Sbjct: 156 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 640 THSMDEAEELGDRIAIMANGS 660
S E + D+I I+ GS
Sbjct: 216 VTSKMEHLKKADKILILHEGS 236
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 481 ILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDILFP 539
++A+LG G+GKST ++++ LI P G V ++ T + ++R + PQ +LF
Sbjct: 371 LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS 430
Query: 540 ELTVREHLEMFAVLKGVKEELLESV-VAEMVDEV-----GLADKVNIVVRALSGGMKRKL 593
T++E+L+ + +E++E+ +A++ D + G +V R SGG K++L
Sbjct: 431 G-TIKENLK-WGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL 488
Query: 594 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRI 653
S+ AL+ KV+ILD+ TS +DP + + T + A L D+I
Sbjct: 489 SIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTA-LLADKI 547
Query: 654 AIMANGSLKCCGS 666
++ G + G+
Sbjct: 548 LVLHEGKVAGFGT 560
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 106/214 (49%), Gaps = 23/214 (10%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGY 1437
+ FSV+ G LG G+GK+T +++I P G + D+R+ K R I
Sbjct: 362 VNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISA 421
Query: 1438 CPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME--KLVEF-DLL--------KHAK 1486
PQ + +L T++E+L+ + R E DD ++E K+ + D + +
Sbjct: 422 VPQ-ETVLFSGTIKENLK-WGR-----EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474
Query: 1487 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1546
+ SGG K++LS+A A++ P ++ILD+ ++ +DPI ++ + + + R + +G T
Sbjct: 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTF 532
Query: 1547 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
I+T L +I ++ G++ G+ + L
Sbjct: 533 IITQKI--PTALLADKILVLHEGKVAGFGTHKEL 564
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 63.5 bits (153), Expect = 9e-10, Method: Composition-based stats.
Identities = 58/171 (33%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 1386 GECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALL 1445
GE LG NG+GKTT L ISG P G FI G ++R R I Y
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRK----IRNYIRYSTNLPEAY 84
Query: 1446 EY-LTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA-KKPSFTLSGGNKRKLSVA 1503
E +TV + + LY +KG+ D+ +E L L + ++ + LS G + +
Sbjct: 85 EIGVTVNDIVYLYEELKGLDR----DLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTS 140
Query: 1504 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1554
+A+ P IV LDEP +D A+R VISR GK IL TH ++
Sbjct: 141 LALASQPEIVGLDEPFENVDA-ARR---HVISRYIKEYGKEG-ILVTHELD 186
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 484 LLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTV 543
+LG NG+GK+T + + GL+ P +G+ + G + + IR + Y+I +TV
Sbjct: 35 ILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI---GVTV 90
Query: 544 REHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGD 602
+ + ++ LKG+ +L EM+ + L +++ + LS G + +AL
Sbjct: 91 NDIVYLYEELKGLDRDLF----LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQ 146
Query: 603 SKVVILDEPTSGMD 616
++V LDEP +D
Sbjct: 147 PEIVGLDEPFENVD 160
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 27/166 (16%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 36 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 83
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1489
+C QF ++ T++E++ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 84 SFCSQFSWIMPG-TIKENI-----IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 137
Query: 1490 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
TLSGG + ++S+A A+ D + +LD P +D + ++ ++E
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 183
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 23/206 (11%)
Query: 462 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM 521
+ G + + + Q+LA+ G GAGK++ + M++G + P+ G G+
Sbjct: 29 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------ 82
Query: 522 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVA--EMVDEVG-LADKV 578
+ C Q+ + P T++E++ +F V E SV+ ++ +++ A+K
Sbjct: 83 ------ISFCSQFSWIMPG-TIKENI-IFGV--SYDEYRYRSVIKACQLEEDISKFAEKD 132
Query: 579 NIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXX 634
NIV+ LSGG + ++SL A+ D+ + +LD P +D + + ++
Sbjct: 133 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 192
Query: 635 XXXXTTHSMDEAEELGDRIAIMANGS 660
S E + D+I I+ GS
Sbjct: 193 KTRILVTSKMEHLKKADKILILHEGS 218
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 17/241 (7%)
Query: 433 VEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGK 492
V A +++KQ +D H + + + L++ + + +A +G +G GK
Sbjct: 328 VGAQPIEIKQGRIDID-------HVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGK 380
Query: 493 STTISMLVGLIPPTTGDALVFGKNITADMD-EIRKGLGVCPQYDILFPELTVREHLEMFA 551
ST I+++ T+G L+ G NI + +R +G+ Q +ILF + TV+E++ +
Sbjct: 381 STLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENI-LLG 438
Query: 552 VLKGVKEELLESV-VAEMVDEV-----GLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605
EE++E+ +A D + G +V LSGG K++LS+ + + +
Sbjct: 439 RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI 498
Query: 606 VILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCG 665
+ILDE TS +D S + + H + D+I ++ NG + G
Sbjct: 499 LILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVETG 557
Query: 666 S 666
+
Sbjct: 558 T 558
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 13/219 (5%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA-RRLIGY 1437
+ S++ GE F+G +G GK+T +++I T G I G +I+ + R IG
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419
Query: 1438 CPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL------KHAKKPSFT 1491
Q D +L TV+E++ L R E ++ M +F + +
Sbjct: 420 VQQ-DNILFSDTVKENI-LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
LSGG K++LS+A + +PPI+ILDE ++ +D ++ + E + LS + +T +I+ H
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIV-AH 534
Query: 1552 SMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
++ +I ++ G + G+ + L + G + L
Sbjct: 535 RLSTITH-ADKIVVIENGHIVETGTHRELIAKQGAYEHL 572
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 27/166 (16%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 71
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1489
+C QF ++ T++E++ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 72 SFCSQFSWIMPG-TIKENI-----IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 125
Query: 1490 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
TLSGG + ++S+A A+ D + +LD P +D + ++ ++E
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 171
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 23/206 (11%)
Query: 462 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM 521
+ G + + + Q+LA+ G GAGK++ + M++G + P+ G G+
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------ 70
Query: 522 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVA--EMVDEVG-LADKV 578
+ C Q+ + P T++E++ +F V E SV+ ++ +++ A+K
Sbjct: 71 ------ISFCSQFSWIMPG-TIKENI-IFGV--SYDEYRYRSVIKACQLEEDISKFAEKD 120
Query: 579 NIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXX 634
NIV+ LSGG + ++SL A+ D+ + +LD P +D + + ++
Sbjct: 121 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 180
Query: 635 XXXXTTHSMDEAEELGDRIAIMANGS 660
S E + D+I I+ GS
Sbjct: 181 KTRILVTSKMEHLKKADKILILHEGS 206
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 28/166 (16%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 71
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1489
+C QF ++ T++E+ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 72 SFCSQFSWIMPG-TIKEN------IIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 124
Query: 1490 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
TLSGG + ++S+A A+ D + +LD P +D + ++ ++E
Sbjct: 125 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 170
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 90/208 (43%), Gaps = 28/208 (13%)
Query: 462 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM 521
+ G + + + Q+LA+ G GAGK++ + M++G + P+ G G+
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------ 70
Query: 522 DEIRKGLGVCPQYDILFPELTVREHL-----EMFAVLKGVKEELLESVVAEMVDEVGLAD 576
+ C Q+ + P T++E++ + + +K LE +++ A+
Sbjct: 71 ------ISFCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISK------FAE 117
Query: 577 KVNIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXX 632
K NIV+ LSGG + ++SL A+ D+ + +LD P +D + + ++
Sbjct: 118 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 177
Query: 633 XXXXXXTTHSMDEAEELGDRIAIMANGS 660
S E + D+I I+ GS
Sbjct: 178 ANKTRILVTSKMEHLKKADKILILHEGS 205
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 61.6 bits (148), Expect = 4e-09, Method: Composition-based stats.
Identities = 58/236 (24%), Positives = 123/236 (52%), Gaps = 23/236 (9%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR-- 1425
KR + ++ +AG+ +G++G+GK+T L I+ E P++G + G++I
Sbjct: 14 KRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLV 73
Query: 1426 ---------SDPKAAR----RLIGYCPQFDALLEYLTVQEH-LELYARIKGVAEYRMDDV 1471
+D R RL F+ L ++TV E+ +E ++ G++++ +
Sbjct: 74 RDKDGQLKVADKNQLRLLRTRLTMVFQHFN-LWSHMTVLENVMEAPIQVLGLSKHDARER 132
Query: 1472 VMEKLVEFDLLKHAK-KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
++ L + + + A+ K LSGG ++++S+A A+ +P +++ DEP++ +DP +
Sbjct: 133 ALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 192
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1586
++ +L+ +GKT V++ TH M A+ + + + + G++ G P+ + FGN
Sbjct: 193 LRIMQQLA-EEGKTMVVV-THEMGFARHVSSHVIFLHQGKIEEEGDPEQV---FGN 243
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 28/148 (18%)
Query: 492 KSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCP--QYDILFPELT-VREHLE 548
KST + + L P+ G +V G+NI D+ + L V Q +L LT V +H
Sbjct: 45 KSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ-LKVADKNQLRLLRTRLTMVFQHFN 103
Query: 549 MFAVLKGVKEELLESVVAEMVDEVGLAD------------KVNIVVRA-------LSGGM 589
+++ + +LE+V+ + +GL+ KV I RA LSGG
Sbjct: 104 LWSHMT-----VLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQ 158
Query: 590 KRKLSLGIALIGDSKVVILDEPTSGMDP 617
++++S+ AL + V++ DEPTS +DP
Sbjct: 159 QQRVSIARALAMEPDVLLFDEPTSALDP 186
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 27/166 (16%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1489
+C QF ++ T++E++ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 102 SFCSQFSWIMPG-TIKENI-----IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 1490 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
TLS G + K+S+A A+ D + +LD P +D + ++ ++E
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 201
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 23/199 (11%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528
+ + + Q+LA+ G GAGK++ + M++G + P+ G G+ +
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVA--EMVDEVG-LADKVNIVVR-- 583
C Q+ + P T++E++ +F V E SV+ ++ +++ A+K NIV+
Sbjct: 102 SFCSQFSWIMPG-TIKENI-IFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 584 --ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTH 641
LS G + K+SL A+ D+ + +LD P +D + + ++
Sbjct: 158 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 642 SMDEAEELGDRIAIMANGS 660
S E + D+I I+ GS
Sbjct: 218 SKMEHLKKADKILILHEGS 236
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 19/194 (9%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-EEYP-TDGTAFIFGKDIRSDPKA 1430
K + L+ V GE +G NG+GK+T + ++G E+Y T GT GKD+ +
Sbjct: 14 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 73
Query: 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYR---------MDDVVMEKLVEF-- 1479
R G F +E V L + V YR D++ EK+
Sbjct: 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 133
Query: 1480 --DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1537
DLL + F SGG K++ + + +P + ILDE +G+D A + + + ++ L
Sbjct: 134 PEDLLTRSVNVGF--SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL 191
Query: 1538 STRQGKTAVILTTH 1551
R GK + I+ TH
Sbjct: 192 --RDGKRSFIIVTH 203
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 29/192 (15%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-PTTG 508
+ I+ LH K + L L ++ ++ A++G NG+GKST + L G TG
Sbjct: 2 LSIKDLHVSVEDK----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG 57
Query: 509 DALVF-GKNITADMDEIRKGLGV--CPQYDILFPELTVREHLEMFAVLKGVK-------- 557
+ F GK++ A E R G G+ QY + P ++ + L+ L V+
Sbjct: 58 GTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQ--TALNAVRSYRGQETL 115
Query: 558 -----EELLESVVA--EMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDE 610
++L+E +A +M +++ L VN+ SGG K++ + + + ++ ILDE
Sbjct: 116 DRFDFQDLMEEKIALLKMPEDL-LTRSVNV---GFSGGEKKRNDILQMAVLEPELCILDE 171
Query: 611 PTSGMDPYSMRL 622
SG+D ++++
Sbjct: 172 SDSGLDIDALKV 183
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 19/194 (9%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-EEYP-TDGTAFIFGKDIRSDPKA 1430
K + L+ V GE +G NG+GK+T + ++G E+Y T GT GKD+ +
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 92
Query: 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYR---------MDDVVMEKLVEF-- 1479
R G F +E V L + V YR D++ EK+
Sbjct: 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 152
Query: 1480 --DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1537
DLL + F SGG K++ + + +P + ILDE +G+D A + + + ++ L
Sbjct: 153 PEDLLTRSVNVGF--SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL 210
Query: 1538 STRQGKTAVILTTH 1551
R GK + I+ TH
Sbjct: 211 --RDGKRSFIIVTH 222
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 29/192 (15%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-PTTG 508
+ I+ LH K + L L ++ ++ A++G NG+GKST + L G TG
Sbjct: 21 LSIKDLHVSVEDK----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG 76
Query: 509 DALVF-GKNITADMDEIRKGLGV--CPQYDILFPELTVREHLEMFAVLKGVK-------- 557
+ F GK++ A E R G G+ QY + P ++ + L+ L V+
Sbjct: 77 GTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQ--TALNAVRSYRGQETL 134
Query: 558 -----EELLESVVA--EMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDE 610
++L+E +A +M +++ L VN+ SGG K++ + + + ++ ILDE
Sbjct: 135 DRFDFQDLMEEKIALLKMPEDL-LTRSVNV---GFSGGEKKRNDILQMAVLEPELCILDE 190
Query: 611 PTSGMDPYSMRL 622
SG+D ++++
Sbjct: 191 SDSGLDIDALKV 202
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 465 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDE 523
N + L TLY ++ AL+G NG+GKST ++L L PT G L+ G+ + D
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 524 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEEL----LESVVAEMVD--EVGLADK 577
+ + Q +LF + RE++ EE+ +ES + + G +
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTE 149
Query: 578 VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
V LSGG ++ ++L ALI +++ILD+ TS +D
Sbjct: 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALD 188
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 102/230 (44%), Gaps = 30/230 (13%)
Query: 1346 LSGSVD----NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTT 1401
LSGS+ ++ +++ YP + +V + LTF++ G+ +G NG+GK+T
Sbjct: 4 LSGSLAPLNMKGLVKFQDVSFAYP--NHPNVQV-LQGLTFTLYPGKVTALVGPNGSGKST 60
Query: 1402 TLSMISGEEYPTDGTAFIFGKD-IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI 1460
+++ PT G + G+ ++ D + Q + LL + +E++ Y
Sbjct: 61 VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ-EPLLFGRSFRENIA-YGLT 118
Query: 1461 KGVAEYRMDDVVMEKLVE---------FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511
+ + V ME +D + LSGG ++ +++A A+I P
Sbjct: 119 RTPTMEEITAVAMESGAHDFISGFPQGYD--TEVGETGNQLSGGQRQAVALARALIRKPR 176
Query: 1512 IVILDEPSTGMDP----IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1557
++ILD+ ++ +D +R ++E S V+L TH ++ A+
Sbjct: 177 LLILDQATSALDAGNQLRVQRLLYE-----SPEWASRTVLLITHQLSLAE 221
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 19/205 (9%)
Query: 1358 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1417
+N+ YP R + + + S+ +G +G +G+GK+T LS++ P GT
Sbjct: 376 KNVHFAYPA--RPEVPI-FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 432
Query: 1418 FIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYA---------RIKGVAEYR 1467
+ G DIR +P R IG Q + +L ++ E++ A I+ VAE
Sbjct: 433 SLDGHDIRQLNPVWLRSKIGTVSQ-EPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVA 491
Query: 1468 MDDVVMEKLVE-FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1526
+ + F+ + K LSGG K+++++A A++ +P I++LDE ++ +D
Sbjct: 492 NAVAFIRNFPQGFNTVVGEK--GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN 549
Query: 1527 KRFMWEVISRLSTRQGKTAVILTTH 1551
+ + E + RL G+T +++ H
Sbjct: 550 EYLVQEALDRL--MDGRTVLVIAHH 572
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Query: 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 508
++ + +H Y R L++ + AL+G +G+GKST +S+L+ L P +G
Sbjct: 372 ALEFKNVHFAYPA-RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG 430
Query: 509 DALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAV-LKGVKEELLESVVA 566
+ G +I + +R +G Q ILF ++ E++ A V E ++ V A
Sbjct: 431 TISLDGHDIRQLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRV-A 488
Query: 567 EMVDEVGL----ADKVNIVVRA----LSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
E+ + V N VV LSGG K+++++ AL+ + K+++LDE TS +D
Sbjct: 489 EVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD 546
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 28/166 (16%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1489
+C QF ++ T++E+ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 102 SFCSQFSWIMPG-TIKEN------IIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 1490 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
TLS G + K+S+A A+ D + +LD P +D + ++ ++E
Sbjct: 155 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 28/201 (13%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528
+ + + Q+LA+ G GAGK++ + M++G + P+ G G+ +
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 529 GVCPQYDILFPELTVREHL-----EMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 583
C Q+ + P T++E++ + + +K LE +++ A+K NIV+
Sbjct: 102 SFCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISK------FAEKDNIVLG 154
Query: 584 ----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT 639
LS G + K+SL A+ D+ + +LD P +D + + ++
Sbjct: 155 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 640 THSMDEAEELGDRIAIMANGS 660
S E + D+I I+ GS
Sbjct: 215 VTSKMEHLKKADKILILHEGS 235
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 27/230 (11%)
Query: 1369 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP 1428
RSD ++ +TFS+ G +G G GK++ LS + E +G I G
Sbjct: 15 RSDPPT-LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS------ 67
Query: 1429 KAARRLIGYCPQFDALLEYLTVQEHL-------ELYARIKGVAEYRMDDVVMEKLVEFDL 1481
+ Y PQ A ++ +++E++ E Y R A + D +E L D
Sbjct: 68 ------VAYVPQ-QAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD--LEILPSGDR 118
Query: 1482 LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVISRLSTR 1540
+ +K LSGG K+++S+A A+ + I + D+P + +D + K VI
Sbjct: 119 TEIGEK-GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML 177
Query: 1541 QGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
+ KT IL THSM+ + I +M GG++ +GS Q L R G F E
Sbjct: 178 KNKTR-ILVTHSMSYLPQVDVII-VMSGGKISEMGSYQELLARDGAFAEF 225
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 33/217 (15%)
Query: 463 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG------KN 516
R + +N + ++ E ++A++G G GKS+ +S L+ + G + G +
Sbjct: 15 RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQ 74
Query: 517 ITADMDEIRKGLGVCPQYDILF----PELTVREHLEMFAVLKGVKEELLESVVAEMVDEV 572
D +R+ +ILF E R ++ A+L + E+L S + E
Sbjct: 75 AWIQNDSLRE--------NILFGCQLEEPYYRSVIQACALLPDL--EILPSGDRTEIGEK 124
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXX---XX 629
G VN LSGG K+++SL A+ ++ + + D+P S +D + + ++
Sbjct: 125 G----VN-----LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKG 175
Query: 630 XXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGS 666
THSM ++ D I +M+ G + GS
Sbjct: 176 MLKNKTRILVTHSMSYLPQV-DVIIVMSGGKISEMGS 211
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 60.5 bits (145), Expect = 9e-09, Method: Composition-based stats.
Identities = 62/259 (23%), Positives = 118/259 (45%), Gaps = 29/259 (11%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
++ +++ YP R D V + LTF+++ GE +G NG+GK+T +++ P
Sbjct: 13 GLVQFQDVSFAYP--NRPDVLV-LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 69
Query: 1413 TDGTAFIFGKDIRSDPKAARRL-------IGYCPQ-FDALLEY-----LTVQEHLE--LY 1457
T G + GK + P+ R +G PQ F L+ LT + +E
Sbjct: 70 TGGQLLLDGKPL---PQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA 126
Query: 1458 ARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1517
A +K A + + E D + LSGG ++ +++A A+I P ++ILD+
Sbjct: 127 AAVKSGAHSFISGLPQGYDTEVD------EAGSQLSGGQRQAVALARALIRKPCVLILDD 180
Query: 1518 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577
++ +D ++ + +++ R ++ +++T H QA I + GG +R G+
Sbjct: 181 ATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA--DHILFLEGGAIREGGTH 238
Query: 1578 QHLKTRFGNFLELEVKPTE 1596
Q L + G + + P +
Sbjct: 239 QQLMEKKGCYWAMVQAPAD 257
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 8/164 (4%)
Query: 463 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM 521
R + + L TL ++ AL+G NG+GKST ++L L PT G L+ GK + +
Sbjct: 27 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEH 86
Query: 522 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV------GLA 575
+ + + Q +F +++E++ K EE+ + V G
Sbjct: 87 RYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD 145
Query: 576 DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 619
+V+ LSGG ++ ++L ALI V+ILD+ TS +D S
Sbjct: 146 TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 189
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 465 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDE 523
N + L TLY ++ AL+G NG+GKST ++L L PT G L+ G+ + D
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 524 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEEL----LESVVAEMVD--EVGLADK 577
+ + Q +LF + RE++ EE+ +ES + + G +
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTE 149
Query: 578 VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
V LSGG ++ ++L ALI +++ILD TS +D
Sbjct: 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 86/192 (44%), Gaps = 21/192 (10%)
Query: 1346 LSGSVD----NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTT 1401
LSGS+ ++ +++ YP + +V + LTF++ G+ +G NG+GK+T
Sbjct: 4 LSGSLAPLNMKGLVKFQDVSFAYP--NHPNVQV-LQGLTFTLYPGKVTALVGPNGSGKST 60
Query: 1402 TLSMISGEEYPTDGTAFIFGKD-IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI 1460
+++ PT G + G+ ++ D + Q + LL + +E++ Y
Sbjct: 61 VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ-EPLLFGRSFRENIA-YGLT 118
Query: 1461 KGVAEYRMDDVVMEKLVE---------FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511
+ + V ME +D + LSGG ++ +++A A+I P
Sbjct: 119 RTPTMEEITAVAMESGAHDFISGFPQGYD--TEVGETGNQLSGGQRQAVALARALIRKPR 176
Query: 1512 IVILDEPSTGMD 1523
++ILD ++ +D
Sbjct: 177 LLILDNATSALD 188
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 28/166 (16%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1489
+C Q ++ + T++E+ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 102 SFCSQ-NSWIMPGTIKEN------IIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 1490 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
TLSGG + ++S+A A+ D + +LD P +D + ++ ++E
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 28/201 (13%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528
+ + + Q+LA+ G GAGK++ + M++G + P+ G G+ +
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 529 GVCPQYDILFPELTVREHL-----EMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 583
C Q + P T++E++ + + +K LE +++ A+K NIV+
Sbjct: 102 SFCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISK------FAEKDNIVLG 154
Query: 584 ----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT 639
LSGG + ++SL A+ D+ + +LD P +D + + ++
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 640 THSMDEAEELGDRIAIMANGS 660
S E + D+I I+ GS
Sbjct: 215 VTSKMEHLKKADKILILHEGS 235
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 28/166 (16%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1489
+C Q ++ + T++E+ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 102 SFCSQ-NSWIMPGTIKEN------IIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 1490 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
TLSGG + ++S+A A+ D + +LD P +D + ++ ++E
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 28/201 (13%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528
+ + + Q+LA+ G GAGK++ + M++G + P+ G G+ +
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 529 GVCPQYDILFPELTVREHL-----EMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 583
C Q + P T++E++ + + +K LE +++ A+K NIV+
Sbjct: 102 SFCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISK------FAEKDNIVLG 154
Query: 584 ----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT 639
LSGG + ++SL A+ D+ + +LD P +D + + ++
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 640 THSMDEAEELGDRIAIMANGS 660
S E + D+I I+ GS
Sbjct: 215 VTSKMEHLKKADKILILHEGS 235
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 30/218 (13%)
Query: 1384 QAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQ--- 1440
+ GE G LG NG GKTT ++ GE +G+ ++++ Y PQ
Sbjct: 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSV-----------TPEKQILSYKPQRIF 340
Query: 1441 --FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKR 1498
+D TVQ++LE ++ + V ++L LL+ LSGG +
Sbjct: 341 PNYDG-----TVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN---DLSGGELQ 392
Query: 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQA 1558
KL +A + + + +LD+PS+ +D + + + I R+ TR+ K + H ++
Sbjct: 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRV-TRERKAVTFIIDHDLSIHDY 451
Query: 1559 LCTRIGIMVGGQLRCIG---SPQHLKTRFGNFL-ELEV 1592
+ RI I+ G+ G SP LKT FL ELEV
Sbjct: 452 IADRI-IVFKGEPEKAGLATSPVTLKTGMNEFLRELEV 488
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 26/167 (15%)
Query: 469 VNSLQL----TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEI 524
VN +L T N IL +LG NG GK+T + +L G I P GD N DE+
Sbjct: 11 VNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP-----NSKVGKDEV 65
Query: 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVK--EELLESVVAEM---VDEVGLADKV- 578
K Y+ F EL E L++ ++ V+ + L+ V E+ +DE G D+V
Sbjct: 66 LKRFRGKEIYN-YFKELYSNE-LKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVK 123
Query: 579 ---------NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
N LSGG ++L + +L+ ++ V I D+P+S +D
Sbjct: 124 ELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 1388 CFGFLGTNGAGKTTTLSMISGEEYPTDGTA-FIFGKDIRSDPKAARRLIGYCPQ-FDALL 1445
G LG NG GKTT L +++GE P G GKD + + Y + + L
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNEL 86
Query: 1446 EYLTVQEHLELYAR-IKG--------VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGN 1496
+ + +++E ++ +KG + E D V E L ++ K + LSGG
Sbjct: 87 KIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELL---NMTNLWNKDANILSGGG 143
Query: 1497 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1556
++L VA +++ + + I D+PS+ +D + M + I L + VI+ H +
Sbjct: 144 LQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNK---YVIVVDHDLIVL 200
Query: 1557 QALCTRIGIMVGGQLRCIGSPQHLKTRFG--NFLE-------LEVKPTEVS 1598
L I I+ G + R G NFL+ ++++P E+
Sbjct: 201 DYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIK 251
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 478 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDIL 537
E +I+ +LG NG GK+T +LVG I G ++T + ++ L PQ +
Sbjct: 293 EGEIIGILGPNGIGKTTFARILVGEITADEG-------SVTPE----KQILSYKPQR--I 339
Query: 538 FPEL--TVREHLEMFAVLKGVKEELLES--VVAEMVDEVGLADKVNIVVRALSGGMKRKL 593
FP TV+++LE K+ L S E+ + L + V LSGG +KL
Sbjct: 340 FPNYDGTVQQYLE-----NASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKL 394
Query: 594 SLGIALIGDSKVVILDEPTSGMD 616
+ L ++ + +LD+P+S +D
Sbjct: 395 YIAATLAKEADLYVLDQPSSYLD 417
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 31/251 (12%)
Query: 1358 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1417
+N+ YP R + + + S+ +G +G +G+GK+T LS++ P GT
Sbjct: 345 KNVHFAYPA--RPEVPI-FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401
Query: 1418 FIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYA---------RIKGVAEYR 1467
+ G DIR +P R IG Q + +L ++ E++ A I+ VAE
Sbjct: 402 SLDGHDIRQLNPVWLRSKIGTVSQ-EPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVA 460
Query: 1468 MDDVVMEKLVE-FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1526
+ + F+ + K LSGG K+++++A A++ +P I++LDE ++ +D
Sbjct: 461 NAVAFIRNFPQGFNTVVGEK--GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN 518
Query: 1527 KRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1586
+ + E + RL G+T V++ H ++ + + ++ G++ T +G
Sbjct: 519 EYLVQEALDRL--MDGRT-VLVIAHRLSTIKN-ANMVAVLDQGKI----------TEYGK 564
Query: 1587 FLELEVKPTEV 1597
EL KP +
Sbjct: 565 HEELLSKPNGI 575
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 15/179 (8%)
Query: 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 508
++ + +H Y R L++ + AL+G +G+GKST +S+L+ L P +G
Sbjct: 341 ALEFKNVHFAYPA-RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG 399
Query: 509 DALVFGKNITADMDEI--RKGLGVCPQYDILFPELTVREHLEMFAV-LKGVKEELLESVV 565
+ G +I ++ + R +G Q ILF ++ E++ A V E ++ V
Sbjct: 400 TISLDGHDIR-QLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRV- 456
Query: 566 AEMVDEVGL----ADKVNIVVRA----LSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
AE+ + V N VV LSGG K+++++ AL+ + K+++LDE TS +D
Sbjct: 457 AEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD 515
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 29/233 (12%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD-GTAFIFGKDIRSDPKAA 1431
K + +TF ++ G+ +G G+GKTT ++++ Y D G + G DIR +++
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYDVDRGQILVDGIDIRKIKRSS 426
Query: 1432 -RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFD-LLKHAKKPS 1489
R IG Q D +L TV+E+L+ Y G + + + KL D +KH +
Sbjct: 427 LRSSIGIVLQ-DTILFSTTVKENLK-YGN-PGATDEEIKEAA--KLTHSDHFIKHLPEGY 481
Query: 1490 FT--------LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR----FMWEVISRL 1537
T LS G ++ L++ A + +P I+ILDE ++ +D ++ MW+++
Sbjct: 482 ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--- 538
Query: 1538 STRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
+GKT++I+ H +N + I ++ G++ +G L + G + EL
Sbjct: 539 ---EGKTSIII-AHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQKRGFYYEL 586
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 117/272 (43%), Gaps = 18/272 (6%)
Query: 422 CAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLH------KVYATKRGNCCAVNSLQLT 475
AL + E + E LD+++++ D +++R++ V+ + + +
Sbjct: 320 IQMALASAERIFEI--LDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFH 377
Query: 476 LYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQY 534
+ Q +AL+G G+GK+T +++L+ G LV G +I +R +G+ Q
Sbjct: 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQD 437
Query: 535 DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV--GLADKVNIVV----RALSGG 588
ILF TV+E+L+ + EE+ E+ D L + V+ LS G
Sbjct: 438 TILFST-TVKENLK-YGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQG 495
Query: 589 MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEE 648
++ L++ A + + K++ILDE TS +D + + H ++ +
Sbjct: 496 QRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN 555
Query: 649 LGDRIAIMANGSLKCCGSSLFLKHQYGVGYTL 680
D I ++ +G + G L + G Y L
Sbjct: 556 -ADLIIVLRDGEIVEMGKHDELIQKRGFYYEL 586
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 10/178 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+ +H YA R + + T+ Q LAL+G +GAGKST + +L ++G
Sbjct: 54 IEFENVHFSYADGRET---LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC 110
Query: 510 ALVFGKNIT-ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 568
+ G++I+ +R +GV PQ +LF + T+ +++ V G E + A +
Sbjct: 111 IRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAGI 169
Query: 569 VDEV-----GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 621
D + G +V LSGG K+++++ ++ +++LDE TS +D + R
Sbjct: 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 99/209 (47%), Gaps = 16/209 (7%)
Query: 1370 SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPK 1429
+D + + ++F+V G+ +G +GAGK+T L ++ + G I G+DI +
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 1430 AA-RRLIGYCPQFDALLEYLTVQEHLELYARIKG----VAEYRMDDVVMEKLVEF--DLL 1482
A+ R IG PQ D +L T+ +++ Y R+ V + + ++ F
Sbjct: 124 ASLRSHIGVVPQ-DTVLFNDTIADNIR-YGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYR 181
Query: 1483 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
+ LSGG K+++++A ++ P I++LDE ++ +D +R + ++++ +
Sbjct: 182 TQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR- 240
Query: 1543 KTAVILTTHSM----NEAQALCTRIGIMV 1567
I+ H + N Q L + G +V
Sbjct: 241 --TTIVVAHRLSTVVNADQILVIKDGCIV 267
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 27/166 (16%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435
+ ++ +++ GE G+ G+GKT+ L +I GE ++G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1489
+C QF ++ T++E++ I+GV+ EYR VV ++ D+ K A++ +
Sbjct: 102 SFCSQFSWIMPG-TIKENI-----IRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 155
Query: 1490 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
TLSGG + ++S+A A+ D + +LD P +D + ++E
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 89/201 (44%), Gaps = 27/201 (13%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528
+ ++ L + + ++LA+ G G+GK++ + +++G + + G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 529 GVCPQYDILFPELTVREHLEMFAVLKGVK--EELLESVVAE---MVDEVGLADKVNIVVR 583
C Q+ + P T++E+ +++GV E +SVV D A++ N V+
Sbjct: 102 SFCSQFSWIMPG-TIKEN-----IIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 155
Query: 584 ----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT 639
LSGG + ++SL A+ D+ + +LD P +D ++ ++
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 640 THSMDEAEELGDRIAIMANGS 660
S E D+I I+ GS
Sbjct: 216 VTSKMEHLRKADKILILHQGS 236
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 113/227 (49%), Gaps = 21/227 (9%)
Query: 1330 LDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECF 1389
LD ++ D E RV+ + + + RN+ YPG D A+ ++ + AG+
Sbjct: 322 LDSEQEKD---EGKRVIERATGD--VEFRNVTFTYPG---RDVP-ALRNINLKIPAGKTV 372
Query: 1390 GFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA-RRLIGYCPQFDALLEYL 1448
+G +G+GK+T S+I+ +G + G D+R A+ R + Q L
Sbjct: 373 ALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFND- 431
Query: 1449 TVQEHLELYARIKGVAEYRMDDVV-----MEKLVEFD--LLKHAKKPSFTLSGGNKRKLS 1501
TV ++ YAR + + ++++ M+ + + D L + LSGG +++++
Sbjct: 432 TVANNIA-YARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490
Query: 1502 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1548
+A A++ D PI+ILDE ++ +D ++R + + L ++ +T++++
Sbjct: 491 IARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTSLVI 535
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 118/252 (46%), Gaps = 15/252 (5%)
Query: 438 LDMKQQEVDGRCIQIR-----KLHKVYATKRG-NCCAVNSLQLTLYENQILALLGHNGAG 491
LD +Q++ +G+ + R + V T G + A+ ++ L + + +AL+G +G+G
Sbjct: 322 LDSEQEKDEGKRVIERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSG 381
Query: 492 KSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMF 550
KST S++ G+ L+ G ++ + +R + + Q LF + TV ++
Sbjct: 382 KSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYA 440
Query: 551 AVLKGVKEELLESV-VAEMVDEVGLADK-VNIVVRA----LSGGMKRKLSLGIALIGDSK 604
+ +E++ E+ +A +D + D ++ V+ LSGG ++++++ AL+ DS
Sbjct: 441 RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP 500
Query: 605 VVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCC 664
++ILDE TS +D S R H + E+ D I ++ +G +
Sbjct: 501 ILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK-ADEIVVVEDGVIVER 559
Query: 665 GSSLFLKHQYGV 676
G+ L GV
Sbjct: 560 GTHNDLLEHRGV 571
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 118/252 (46%), Gaps = 15/252 (5%)
Query: 438 LDMKQQEVDGRCIQIR-----KLHKVYATKRG-NCCAVNSLQLTLYENQILALLGHNGAG 491
LD +Q++ +G+ + R + V T G A+ ++ L + + +AL+G +G+G
Sbjct: 322 LDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSG 381
Query: 492 KSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMF 550
KST S++ G L+ G ++ + +R + + Q LF + TV ++
Sbjct: 382 KSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYA 440
Query: 551 AVLKGVKEELLESV-VAEMVDEVGLADK-VNIVVRA----LSGGMKRKLSLGIALIGDSK 604
+ +E++ E+ +A +D + D ++ ++ LSGG ++++++ AL+ DS
Sbjct: 441 RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP 500
Query: 605 VVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCC 664
++ILDE TS +D S R H + E+ D I ++ +G +
Sbjct: 501 ILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ-ADEIVVVEDGIIVER 559
Query: 665 GSSLFLKHQYGV 676
G+ L Q+GV
Sbjct: 560 GTHSELLAQHGV 571
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 101/199 (50%), Gaps = 16/199 (8%)
Query: 1358 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1417
RN+ YPG + A+ ++ + AG+ +G +G+GK+T S+I+ +G
Sbjct: 345 RNVTFTYPGREVP----ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400
Query: 1418 FIFGKDIRSDPKAA-RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV---- 1472
+ G D+R A+ R + Q L TV ++ YAR + + ++++
Sbjct: 401 LMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIA-YARTEEYSREQIEEAARMAY 458
Query: 1473 -MEKLVEFD--LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1529
M+ + + D L + LSGG ++++++A A++ D PI+ILDE ++ +D ++R
Sbjct: 459 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518
Query: 1530 MWEVISRLSTRQGKTAVIL 1548
+ + L ++ +T++++
Sbjct: 519 IQAALDEL--QKNRTSLVI 535
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 27/166 (16%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435
+ ++ +++ GE G+ G+GKT+ L +I GE ++G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1489
+C QF ++ T++E++ I GV+ EYR VV ++ D+ K A++ +
Sbjct: 102 SFCSQFSWIMPG-TIKENI-----ISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 155
Query: 1490 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
TLSGG + ++S+A A+ D + +LD P +D + ++E
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 27/201 (13%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528
+ ++ L + + ++LA+ G G+GK++ + +++G + + G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 529 GVCPQYDILFPELTVREHLEMFAVLKGVK--EELLESVVAE---MVDEVGLADKVNIVVR 583
C Q+ + P T++E+ ++ GV E +SVV D A++ N V+
Sbjct: 102 SFCSQFSWIMPG-TIKEN-----IISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 155
Query: 584 ----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT 639
LSGG + ++SL A+ D+ + +LD P +D ++ ++
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 640 THSMDEAEELGDRIAIMANGS 660
S E D+I I+ GS
Sbjct: 216 VTSKMEHLRKADKILILHQGS 236
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 8/159 (5%)
Query: 465 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDE 523
N + L TLY ++ AL+G NG+GKST ++L L PT G L+ G+ + D
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 524 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEEL----LESVVAEMVD--EVGLADK 577
+ + Q +LF + RE++ EE+ +ES + + G +
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTE 149
Query: 578 VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
V L+ G ++ ++L ALI +++ILD TS +D
Sbjct: 150 VGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALD 188
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 85/192 (44%), Gaps = 21/192 (10%)
Query: 1346 LSGSVD----NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTT 1401
LSGS+ ++ +++ YP + +V + LTF++ G+ +G NG+GK+T
Sbjct: 4 LSGSLAPLNMKGLVKFQDVSFAYP--NHPNVQV-LQGLTFTLYPGKVTALVGPNGSGKST 60
Query: 1402 TLSMISGEEYPTDGTAFIFGKD-IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI 1460
+++ PT G + G+ ++ D + Q + LL + +E++ Y
Sbjct: 61 VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ-EPLLFGRSFRENIA-YGLT 118
Query: 1461 KGVAEYRMDDVVMEKLVE---------FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511
+ + V ME +D + L+ G ++ +++A A+I P
Sbjct: 119 RTPTMEEITAVAMESGAHDFISGFPQGYD--TEVGETGNQLAVGQRQAVALARALIRKPR 176
Query: 1512 IVILDEPSTGMD 1523
++ILD ++ +D
Sbjct: 177 LLILDNATSALD 188
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 27/166 (16%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435
+ ++ +++ GE G+ G+GKT+ L +I GE ++G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1489
+C QF ++ T++E++ I GV+ EYR VV ++ D+ K A++ +
Sbjct: 102 SFCSQFSWIMPG-TIKENI-----IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 155
Query: 1490 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
TLSGG + ++S+A A+ D + +LD P +D + ++E
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 23/199 (11%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528
+ ++ L + + ++LA+ G G+GK++ + +++G + + G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE---MVDEVGLADKVNIVVR-- 583
C Q+ + P T++E++ +F V E +SVV D A++ N V+
Sbjct: 102 SFCSQFSWIMPG-TIKENI-IFGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 584 --ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTH 641
LSGG + ++SL A+ D+ + +LD P +D ++ ++
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 642 SMDEAEELGDRIAIMANGS 660
S E D+I I+ GS
Sbjct: 218 SKMEHLRKADKILILHQGS 236
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 27/166 (16%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435
+ ++ +++ GE G+ G+GKT+ L +I GE ++G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1489
+C QF ++ T++E++ I GV+ EYR VV ++ D+ K A++ +
Sbjct: 102 SFCSQFSWIMPG-TIKENI-----IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 155
Query: 1490 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
TLSGG + ++S+A A+ D + +LD P +D + ++E
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 23/199 (11%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528
+ ++ L + + ++LA+ G G+GK++ + +++G + + G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE---MVDEVGLADKVNIVVR-- 583
C Q+ + P T++E++ +F V E +SVV D A++ N V+
Sbjct: 102 SFCSQFSWIMPG-TIKENI-IFGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 584 --ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTH 641
LSGG + ++SL A+ D+ + +LD P +D ++ ++
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 642 SMDEAEELGDRIAIMANGS 660
S E D+I I+ GS
Sbjct: 218 SKMEHLRKADKILILHQGS 236
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 1382 SVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQF 1441
++ GE G +G NG GKTT + M++G E PT+G + D A Y PQ
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK-------VEWDLTVA-----YKPQ- 410
Query: 1442 DALLEYLTVQEHLELYARIKGVAEYRMDD--VVMEKLVEFDLLKHAKKPSFTLSGGNKRK 1499
Y+ + +Y + + +++ E L ++ + LSGG ++
Sbjct: 411 -----YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQR 465
Query: 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1548
+++A ++ D I +LDEPS +D + + I L + KTA+++
Sbjct: 466 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 20/143 (13%)
Query: 476 LYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYD 535
+ + +++ ++G NG GK+T + ML G+ PT G + D+ K PQY
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-------KVEWDLTVAYK-----PQYI 412
Query: 536 ILFPELTVREHLEMFAVLKGVKEELLES--VVAEMVDEVGLADKVNIVVRALSGGMKRKL 593
E TV + +L + L S E++ +G+ D + V LSGG +++
Sbjct: 413 KAEYEGTV------YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 466
Query: 594 SLGIALIGDSKVVILDEPTSGMD 616
++ L+ D+ + +LDEP++ +D
Sbjct: 467 AIAATLLRDADIYLLDEPSAYLD 489
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 106/258 (41%), Gaps = 33/258 (12%)
Query: 1383 VQAGECFGFLGTNGAGKTTTLSMISGEEYPT--------DGTAFIF-GKDI-----RSDP 1428
V+ G G +G NG GKTT + +++G+ P D F G ++ R
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
Query: 1429 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKP 1488
R ++ PQ+ LL + EL ++ V ++ +E D H
Sbjct: 160 GEIRPVVK--PQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELH---- 213
Query: 1489 SFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1548
LSGG +++++A A++ DEPS+ +D + + VI RL+ +GK AV++
Sbjct: 214 --QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGK-AVLV 269
Query: 1549 TTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKTRFGNFLE-------LEVKPTEVSS 1599
H + L I ++ G G P+ + FL+ + +P E+
Sbjct: 270 VEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRF 329
Query: 1600 VDLEDLCQIIQERVFDIP 1617
L + + +E + + P
Sbjct: 330 TKLSERVDVERETLVEYP 347
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 38/161 (23%)
Query: 478 ENQILALLGHNGAGKSTTISMLVG-LIPPTTGD--------ALVFGKNITADMDEIRKGL 528
+ ++ ++G NG GK+T + +L G LIP D G + + ++ G
Sbjct: 102 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGE 161
Query: 529 ---GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-------LADKV 578
V PQY L P+ +KG ELL+ V DEVG +
Sbjct: 162 IRPVVKPQYVDLLPK-----------AVKGKVRELLKKV-----DEVGKFEEVVKELELE 205
Query: 579 NIVVRAL---SGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
N++ R L SGG +++++ AL+ + DEP+S +D
Sbjct: 206 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 246
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 16/166 (9%)
Query: 1383 VQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFD 1442
++ GE G +G NG GKTT + ++G E PT+G I D A Y PQ+
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGK-------IEWDLTVA-----YKPQYI 356
Query: 1443 ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSV 1502
TV EL ++I ++ + E L ++ + LSGG +++++
Sbjct: 357 KADYEGTV---YELLSKIDA-SKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAI 412
Query: 1503 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1548
A ++ D I +LDEPS +D + + I L + KTA+++
Sbjct: 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 18/151 (11%)
Query: 478 ENQILALLGHNGAGKSTTISMLVG-LIPPTTGDALVF--------GKNITADMDEIRKGL 528
E ++ ++G NG GKST + +L G LIP GD + G + ++++ G
Sbjct: 46 EGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGE 105
Query: 529 ---GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRAL 585
V PQY L P+ + +E+ LK E + E+V + L + + ++ L
Sbjct: 106 IRPVVKPQYVDLIPKAVKGKVIEL---LKKADE---TGKLEEVVKALELENVLEREIQHL 159
Query: 586 SGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
SGG +++++ AL+ ++ DEP+S +D
Sbjct: 160 SGGELQRVAIAAALLRNATFYFFDEPSSYLD 190
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 20/141 (14%)
Query: 478 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDIL 537
+ +++ ++G NG GK+T + L G+ PT G I D+ K PQY
Sbjct: 311 KGEVIGIVGPNGIGKTTFVKXLAGVEEPTEG-------KIEWDLTVAYK-----PQYIKA 358
Query: 538 FPELTVREHLEMFAVLKGVKEELLES--VVAEMVDEVGLADKVNIVVRALSGGMKRKLSL 595
E TV E +L + L S E++ +G+ D + V LSGG +++++
Sbjct: 359 DYEGTVYE------LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAI 412
Query: 596 GIALIGDSKVVILDEPTSGMD 616
L+ D+ + +LDEP++ +D
Sbjct: 413 AATLLRDADIYLLDEPSAYLD 433
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 57/262 (21%), Positives = 113/262 (43%), Gaps = 41/262 (15%)
Query: 1383 VQAGECFGFLGTNGAGKTTTLSMISGEEYPT--------DGTAFIF-GKDIRS-----DP 1428
V+ G G +G NG GK+T + +++G+ P DG F G ++++
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 1429 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV----MEKLVEFDLLKH 1484
R ++ PQ+ L+ + +EL + ++++VV +E ++E ++ +H
Sbjct: 104 GEIRPVVK--PQYVDLIPKAVKGKVIELLKKADETG--KLEEVVKALELENVLEREI-QH 158
Query: 1485 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1544
LSGG +++++A A++ + DEPS+ +D + I RLS +GK+
Sbjct: 159 -------LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS-EEGKS 210
Query: 1545 AVILTTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKTRFGNFLE-------LEVKPT 1595
V++ H + L I ++ G G P+ + FL + +P
Sbjct: 211 -VLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFRPY 269
Query: 1596 EVSSVDLEDLCQIIQERVFDIP 1617
E+ + +I +E + P
Sbjct: 270 EIKFTKTGERVEIERETLVTYP 291
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 1382 SVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQF 1441
++ GE G +G NG GKTT + M++G E PT+G + D A Y PQ
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK-------VEWDLTVA-----YKPQ- 424
Query: 1442 DALLEYLTVQEHLELYARIKGVAEYRMDD--VVMEKLVEFDLLKHAKKPSFTLSGGNKRK 1499
Y+ + +Y + + +++ E L ++ + LSGG ++
Sbjct: 425 -----YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQR 479
Query: 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1548
+++A ++ D I +LDEPS +D + + I L + KTA+++
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 20/143 (13%)
Query: 476 LYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYD 535
+ + +++ ++G NG GK+T + ML G+ PT G + D+ K PQY
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-------KVEWDLTVAYK-----PQYI 426
Query: 536 ILFPELTVREHLEMFAVLKGVKEELLES--VVAEMVDEVGLADKVNIVVRALSGGMKRKL 593
E TV + +L + L S E++ +G+ D + V LSGG +++
Sbjct: 427 KAEYEGTV------YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 480
Query: 594 SLGIALIGDSKVVILDEPTSGMD 616
++ L+ D+ + +LDEP++ +D
Sbjct: 481 AIAATLLRDADIYLLDEPSAYLD 503
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 106/258 (41%), Gaps = 33/258 (12%)
Query: 1383 VQAGECFGFLGTNGAGKTTTLSMISGEEYPT--------DGTAFIF-GKDI-----RSDP 1428
V+ G G +G NG GKTT + +++G+ P D F G ++ R
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173
Query: 1429 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKP 1488
R ++ PQ+ LL + EL ++ V ++ +E D H
Sbjct: 174 GEIRPVVK--PQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELH---- 227
Query: 1489 SFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1548
LSGG +++++A A++ DEPS+ +D + + VI RL+ +GK AV++
Sbjct: 228 --QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGK-AVLV 283
Query: 1549 TTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKTRFGNFLE-------LEVKPTEVSS 1599
H + L I ++ G G P+ + FL+ + +P E+
Sbjct: 284 VEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRF 343
Query: 1600 VDLEDLCQIIQERVFDIP 1617
L + + +E + + P
Sbjct: 344 TKLSERVDVERETLVEYP 361
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 38/161 (23%)
Query: 478 ENQILALLGHNGAGKSTTISMLVG-LIPPTTGDALVF--------GKNITADMDEIRKGL 528
+ ++ ++G NG GK+T + +L G LIP D + G + + ++ G
Sbjct: 116 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGE 175
Query: 529 ---GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-------LADKV 578
V PQY L P+ +KG ELL+ V DEVG +
Sbjct: 176 IRPVVKPQYVDLLPK-----------AVKGKVRELLKKV-----DEVGKFEEVVKELELE 219
Query: 579 NIVVRAL---SGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
N++ R L SGG +++++ AL+ + DEP+S +D
Sbjct: 220 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 28/166 (16%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435
+ ++ +++ GE G+ G+GKT+ L +I GE ++G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1489
+C QF ++ T++E+ I GV+ EYR VV ++ D+ K A++ +
Sbjct: 102 SFCSQFSWIMPG-TIKEN------IIGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 154
Query: 1490 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
TLSGG + ++S+A A+ D + +LD P +D + ++E
Sbjct: 155 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 200
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 86/199 (43%), Gaps = 24/199 (12%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528
+ ++ L + + ++LA+ G G+GK++ + +++G + + G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE---MVDEVGLADKVNIVVR-- 583
C Q+ + P T++E++ + E +SVV D A++ N V+
Sbjct: 102 SFCSQFSWIMPG-TIKENI----IGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 156
Query: 584 --ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTH 641
LSGG + ++SL A+ D+ + +LD P +D ++ ++
Sbjct: 157 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 216
Query: 642 SMDEAEELGDRIAIMANGS 660
S E D+I I+ GS
Sbjct: 217 SKMEHLRKADKILILHQGS 235
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 57/238 (23%), Positives = 110/238 (46%), Gaps = 23/238 (9%)
Query: 1371 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE-EYPTD-GTAFIFGKDI--RS 1426
D + + + V GE +G NGAGK+T +++G+ EY + G + G++I S
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 1427 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIK-----GVAEYRMDDVVMEKLVEFDL 1481
+ AR+ + Q+ + +T+ L L + K GVAE+ +L+++D
Sbjct: 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDE 133
Query: 1482 LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1541
++ + SGG K++ + ++ +P +LDE +G+D A + + ++ + R
Sbjct: 134 SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAM--RG 191
Query: 1542 GKTAVILTTHS---MNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTE 1596
++ TH +N Q ++ +M+ G++ G P+ LELE K E
Sbjct: 192 PNFGALVITHYQRILNYIQP--DKVHVMMDGRVVATGGPELA-------LELEAKGYE 240
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 37/177 (20%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT---GDALVFGKNI--TADMDE 523
+ + L + + ++ AL+G NGAGKST +L G P T G+ L+ G+NI + +
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG-DPEYTVERGEILLDGENILELSPDER 77
Query: 524 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 583
RKGL + QY + P +T+ L + ++ A++ EVG+A+ V +
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRL-------------ALQAKLGREVGVAEFWTKVKK 124
Query: 584 AL------------------SGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
AL SGG K++ + L+ + +LDE SG+D ++++
Sbjct: 125 ALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKV 181
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 91/176 (51%), Gaps = 26/176 (14%)
Query: 461 TKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG---KNI 517
T+ GN N + ++ Q + LLG G+GKST +S + L+ T G+ + G +I
Sbjct: 30 TEGGNAILEN-ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSI 87
Query: 518 TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL--- 574
T +++ RK GV PQ +F T R++L+ A + + ++ DEVGL
Sbjct: 88 T--LEQWRKAFGVIPQKVFIFSG-TFRKNLDPNAAHS-------DQEIWKVADEVGLRSV 137
Query: 575 ----ADKVNIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
K++ V+ LS G K+ + L +++ +K+++LDEP++ +DP + ++
Sbjct: 138 IEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 145/329 (44%), Gaps = 55/329 (16%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRL 1434
+ +++FS+ G+ G LG G+GK+T LS T+G I G S + R+
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSWDSITLEQWRKA 95
Query: 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM-DDVVMEKLVEFDLLKHAKKPSFTL- 1492
G PQ + T +++L+ A +++ D+V + ++E + K F L
Sbjct: 96 FGVIPQ-KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIE----QFPGKLDFVLV 150
Query: 1493 ------SGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1546
S G+K+ + +A +++ I++LDEPS +DP+ +++I R +
Sbjct: 151 DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT----YQIIRRTLKQAFADCT 206
Query: 1547 ILTTHSMNEAQALCTRIGIMVGGQLRC-------------------IGSPQHLKTRFGNF 1587
++ + EA C + ++ ++R IGSP+ NF
Sbjct: 207 VILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKM------NF 260
Query: 1588 LELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSEN---ATA 1644
L ++V T + V +E L +++V+ +P + R + + +G I E+ +
Sbjct: 261 LPVKVTATAIDQVQVE-LPMPNRQQVW-LPVESRDVQVGANMSLG----IRPEHLLPSDI 314
Query: 1645 AEISLSQEMLLIVGRWLGNEERIKTLISS 1673
A++ L E+ ++ LGNE +I I S
Sbjct: 315 ADVILEGEVQVV--EQLGNETQIHIQIPS 341
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
A++ + +++ + + ++G NG+GKST I+++ G + G K+IT
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 528 LGVCPQYDILFP--ELTVREHLEMFAVLKG-------------VKEELLESVVAEMVDEV 572
G+ + P E+TV E+L + + G KEE + ++++ +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
L+ + LSGG + + +G AL+ + K++++DEP +G+ P
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/212 (23%), Positives = 100/212 (47%), Gaps = 17/212 (8%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434
A+ ++ SV G+ +G NG+GK+T +++I+G +G + KDI + A
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 1435 IGYCPQFDA--LLEYLTVQEHLELYARIKGVAEY----------RMDDVVME--KLVEFD 1480
G F L+ +TV E+L + G + + +++V + K++EF
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 1481 LLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLST 1539
L H + + LSGG + + + A++ +P ++++DEP G+ P ++ + L
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 1540 RQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ G T +I+ H ++ + +M GQ+
Sbjct: 202 K-GITFLII-EHRLDIVLNYIDHLYVMFNGQI 231
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 109/243 (44%), Gaps = 48/243 (19%)
Query: 1336 IDVQVER-NRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGT 1394
+D++ ER N N + ++++ Y G + K A+ ++FS+ G+ +G
Sbjct: 322 MDLETERDNGKYEAERVNGEVDVKDVTFTYQGKE----KPALSHVSFSIPQGKTVALVGR 377
Query: 1395 NGAGKTTTLSMISGEEYPTD-GTAFIFGKDIRSDPKAA--RRLIGYCPQ----------- 1440
+G+GK+T ++ + Y D G+ + G D+R D K RR Q
Sbjct: 378 SGSGKSTIANLFT-RFYDVDSGSICLDGHDVR-DYKLTNLRRHFALVSQNVHLFNDTIAN 435
Query: 1441 ---FDALLEYLTVQEHLELYARIKGVAEY------RMDDVVMEKLVEFDLLKHAKKPSFT 1491
+ A EY +E +E AR E+ +D V+ E +
Sbjct: 436 NIAYAAEGEY--TREQIEQAARQAHAMEFIENMPQGLDTVIGEN-------------GTS 480
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
LSGG ++++++A A++ D P++ILDE ++ +D ++R + + L Q V++ H
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL---QKNKTVLVIAH 537
Query: 1552 SMN 1554
++
Sbjct: 538 RLS 540
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 98/215 (45%), Gaps = 9/215 (4%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526
A++ + ++ + + +AL+G +G+GKST ++ +G + G ++ + +R+
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRR 417
Query: 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV----VAEMVDEV--GLADKVNI 580
+ Q LF + T+ ++ A + +E++ ++ E ++ + GL +
Sbjct: 418 HFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGE 476
Query: 581 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTT 640
+LSGG ++++++ AL+ D+ V+ILDE TS +D S R
Sbjct: 477 NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIA 536
Query: 641 HSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675
H + E+ D I ++ G + G L Q G
Sbjct: 537 HRLSTIEQ-ADEILVVDEGEIIERGRHADLLAQDG 570
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 7/170 (4%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432
K + +T +++ G F G NG GKTT L IS P G G I +
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK----VK 77
Query: 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTL 1492
I + P+ + ++V+++L+ A + GV + + +M+ L ++L KK L
Sbjct: 78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE--IMDALESVEVLDLKKKLG-EL 134
Query: 1493 SGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
S G R++ +A ++ + I +LD+P +D +K + + I + +G
Sbjct: 135 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 184
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 78/148 (52%), Gaps = 13/148 (8%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 531
+ +T+ + ++ G NG GK+T + + + P G+ + G IT +++ +
Sbjct: 28 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KVKGKIFFL 83
Query: 532 PQYDILFPELTVREHLEMFAVLKGV---KEELLESVVAEMVDEVGLADKVNIVVRALSGG 588
P+ I+ +++V ++L+ A L GV K E+++++ E V+ + L K+ LS G
Sbjct: 84 PEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDAL--ESVEVLDLKKKLG----ELSQG 137
Query: 589 MKRKLSLGIALIGDSKVVILDEPTSGMD 616
R++ L L+ ++++ +LD+P +D
Sbjct: 138 TIRRVQLASTLLVNAEIYVLDDPVVAID 165
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
A++ + +++ + + ++G NG+GKST I+++ G + G K+IT
Sbjct: 22 ALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 528 LGVCPQYDILFP--ELTVREHLEMFAVLKG-------------VKEELLESVVAEMVDEV 572
G+ + P E+TV E+L + + G KEE + ++++ +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
L+ + LSGG + + +G AL+ + K++++DEP +G+ P
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 19/213 (8%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434
A+ ++ SV G+ +G NG+GK+T +++I+G +G + KDI + A
Sbjct: 22 ALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 1435 IGYCPQFDA--LLEYLTVQEHL-------------ELYARIKGVAEYRMDDVVMEKLVEF 1479
G F L+ +TV E+L L+ + E M + K++EF
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAF-KILEF 140
Query: 1480 DLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS 1538
L H + + LSGG + + + A++ +P ++++DEP G+ P ++ + L
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 1539 TRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ G T +I+ H ++ + +M GQ+
Sbjct: 201 AK-GITFLII-EHRLDIVLNYIDHLYVMFNGQI 231
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 12/150 (8%)
Query: 479 NQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDIL 537
N I+A G +G GKST S+L PT G+ + G+ I ++ R +G Q D
Sbjct: 28 NSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQ-DSA 86
Query: 538 FPELTVREHLEMFAVLKGVKEELLE--------SVVAEMVDEVGLADKVNIVVRALSGGM 589
T+RE+L E+L + S V M D+ L +V +SGG
Sbjct: 87 IMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ--LNTEVGERGVKISGGQ 144
Query: 590 KRKLSLGIALIGDSKVVILDEPTSGMDPYS 619
+++L++ A + + K+++LDE T+ +D S
Sbjct: 145 RQRLAIARAFLRNPKILMLDEATASLDSES 174
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 86/185 (46%), Gaps = 10/185 (5%)
Query: 1371 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPK 1429
D++ + ++F Q F G +G GK+T S++ PT G I G+ I + +
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72
Query: 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE---YRMDDVVMEKLVEF---DLLK 1483
R IG+ Q A++ T++E+L E +D VE L
Sbjct: 73 NWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNT 131
Query: 1484 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
+ +SGG +++L++A A + +P I++LDE + +D ++ + + + L +G+
Sbjct: 132 EVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL--MKGR 189
Query: 1544 TAVIL 1548
T +++
Sbjct: 190 TTLVI 194
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
A++ + +++ + + ++G NG+GKST I+++ G + G K+IT
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 528 LGVCPQYDILFP--ELTVREHLEMFAVLKG-------------VKEELLESVVAEMVDEV 572
G+ + P E+TV E+L + + G KEE + ++++ +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
L+ + LSGG + + +G AL+ + K++++D+P +G+ P
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAP 186
Score = 50.4 bits (119), Expect = 8e-06, Method: Composition-based stats.
Identities = 50/213 (23%), Positives = 97/213 (45%), Gaps = 19/213 (8%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434
A+ ++ SV G+ +G NG+GK+T +++I+G +G + KDI + A
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 1435 IGYCPQFDA--LLEYLTVQEHL-------------ELYARIKGVAEYRMDDVVMEKLVEF 1479
G F L+ +TV E+L L+ + E M + K++EF
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAF-KILEF 140
Query: 1480 DLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS 1538
L H + + LSGG + + + A++ +P ++++D+P G+ P ++ + L
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELK 200
Query: 1539 TRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ G T +I+ H ++ + +M GQ+
Sbjct: 201 AK-GITFLII-EHRLDIVLNYIDHLYVMFNGQI 231
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 109/238 (45%), Gaps = 39/238 (16%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGY- 1437
L+ V+AGE +G NGAGK+T L+ ++G T G I + +A +L +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1438 -------CPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPS 1489
P F + YLT+ +H + + ++DV ++ L + +
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-------LNDVAGALALDDKLGRSTNQ-- 126
Query: 1490 FTLSGGNKRKLSVAIAMIGDPP-------IVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
LSGG +++ +A ++ P +++LD+P +D + + +++S LS Q
Sbjct: 127 --LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALS--QQ 182
Query: 1543 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG------SPQHLKTRFG-NFLELEVK 1593
A+++++H +N R ++ GG++ G +P +L +G NF L+++
Sbjct: 183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRLDIE 240
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 109/238 (45%), Gaps = 39/238 (16%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGY- 1437
L+ V+AGE +G NGAGK+T L+ ++G T G I + +A +L +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1438 -------CPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPS 1489
P F + YLT+ +H + + ++DV ++ L + +
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-------LNDVAGALALDDKLGRSTNQ-- 126
Query: 1490 FTLSGGNKRKLSVAIAMIGDPP-------IVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
LSGG +++ +A ++ P +++LD+P +D + + +++S LS Q
Sbjct: 127 --LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALS--QQ 182
Query: 1543 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG------SPQHLKTRFG-NFLELEVK 1593
A+++++H +N R ++ GG++ G +P +L +G NF L+++
Sbjct: 183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRLDIE 240
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 56/238 (23%), Positives = 106/238 (44%), Gaps = 39/238 (16%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGY- 1437
L+ V+AGE +G NGAGK+T L+ +G T G I + +A +L +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGX---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1438 -------CPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPS 1489
P F + YLT+ +H + + ++DV ++ L + +
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-------LNDVAGALALDDKLGRSTNQ-- 126
Query: 1490 FTLSGGNKRKLSVAIAMIGDPP-------IVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
LSGG +++ +A ++ P +++LDEP +D + + +++S LS Q
Sbjct: 127 --LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALS--QQ 182
Query: 1543 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG------SPQHLKTRFG-NFLELEVK 1593
A++ ++H +N R ++ GG+ G +P +L +G NF L+++
Sbjct: 183 GLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQAYGXNFRRLDIE 240
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 43/218 (19%)
Query: 1364 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1423
YP K++ ++ E +G NG GKTT + +++G P +G +D
Sbjct: 356 YPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG------QD 409
Query: 1424 IRSDPK--AARRLIGYCPQFDALLEYLTVQEHLELYARIKG-----------VAEYRMDD 1470
I PK + + P+F + L + +I+G V R+DD
Sbjct: 410 I---PKLNVSMKPQKIAPKFPGTVRQL-------FFKKIRGQFLNPQFQTDVVKPLRIDD 459
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
++ +++ +H LSGG +++++ +A+ I ++DEPS +D +
Sbjct: 460 IIDQEV------QH-------LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIIC 506
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG 1568
+VI R KTA I+ H A L ++ + G
Sbjct: 507 SKVIRRFILHNKKTAFIV-EHDFIMATYLADKVIVFEG 543
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 478 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDIL 537
+++IL ++G NG GK+T I +L G + P G + ++ K + P+
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-------PKLNVSMKPQKIAPK---- 425
Query: 538 FPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGI 597
FP TVR+ F ++G + L ++V + + D ++ V+ LSGG +++++ +
Sbjct: 426 FPG-TVRQLF--FKKIRG--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVL 480
Query: 598 ALIGDSKVVILDEPTSGMD 616
AL + + ++DEP++ +D
Sbjct: 481 ALGIPADIYLIDEPSAYLD 499
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 29/172 (16%)
Query: 468 AVNSLQL----TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD-------------- 509
+ NS +L T Q+L L+G NG GKST + +L G P G
Sbjct: 88 SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF 147
Query: 510 -----ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 564
F K + D+ I K PQY P ++ ++ L ++ E
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIK-----PQYVDNIPR-AIKGPVQKVGELLKLRMEKSPED 201
Query: 565 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
V + + L + + + LSGG ++ ++G++ + ++ V + DEP+S +D
Sbjct: 202 VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 37/165 (22%)
Query: 1384 QAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDA 1443
+ G+ G +GTNG GK+T L +++G++ P G DP + +I Y +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF--------DDPPEWQEIIKYF-RGSE 151
Query: 1444 LLEYLTVQEHLELYARIKGVAEYRMDDV------VMEKLVEFDLLKHAKKPSFT------ 1491
L Y T ++ A IK +Y +D++ ++K+ E L+ K P
Sbjct: 152 LQNYFTKMLEDDIKAIIK--PQY-VDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKI 208
Query: 1492 -------------LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
LSGG ++ ++ ++ + + + + DEPS+ +D
Sbjct: 209 LQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 105/238 (44%), Gaps = 39/238 (16%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGY- 1437
L+ V+AGE +G NGAGK+T L+ +G T G I + +A +L +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGX---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1438 -------CPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPS 1489
P F + YLT+ +H + + ++DV ++ L + +
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-------LNDVAGALALDDKLGRSTNQ-- 126
Query: 1490 FTLSGGNKRKLSVAIAMIGDPP-------IVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
LSGG +++ +A ++ P +++LDEP +D + + +++S L Q
Sbjct: 127 --LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALC--QQ 182
Query: 1543 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG------SPQHLKTRFG-NFLELEVK 1593
A++ ++H +N R ++ GG+ G +P +L +G NF L+++
Sbjct: 183 GLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQAYGXNFRRLDIE 240
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 30/161 (18%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISML----VGLIPPTTGDALVFGKNITADMDEI 524
+N QL L + + G NG GKST + + V P V+ + D+D
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVY---VEHDIDGT 507
Query: 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADK-VNIVVR 583
V D +F G KE + + ++ E G D+ + + +
Sbjct: 508 HSDTSV---LDFVFESGV------------GTKEAIKDKLI-----EFGFTDEMIAMPIS 547
Query: 584 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 624
ALSGG K KL+L A++ ++ +++LDEPT+ +D ++ + W
Sbjct: 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLD--TVNVAW 586
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 1333 NEDIDVQVERNRVLSG--SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFG 1390
N D++ + L G + AI+ + N+ YPG +K + + F
Sbjct: 648 NTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPG----TSKPQITDINFQCSLSSRIA 703
Query: 1391 FLGTNGAGKTTTLSMISGEEYPTDGTAF 1418
+G NGAGK+T +++++GE PT G +
Sbjct: 704 VIGPNGAGKSTLINVLTGELLPTSGEVY 731
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 26/158 (16%)
Query: 1372 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE---YPTDGTAFIFGKDIRSDP 1428
AK+ ++ ++ +G G NG GK+T + I+ + +PT
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEEC----------- 495
Query: 1429 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA-KK 1487
R + D +V + + GV + + +KL+EF
Sbjct: 496 ----RTVYVEHDIDGTHSDTSVLD----FVFESGVG---TKEAIKDKLIEFGFTDEMIAM 544
Query: 1488 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1525
P LSGG K KL++A A++ + I++LDEP+ +D +
Sbjct: 545 PISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTV 582
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 482 LALLGHNGAGKSTTISMLVGLIPPTTGD 509
+A++G NGAGKST I++L G + PT+G+
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGE 729
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
LSGG K KL +A P +++LDEP+ +D R +S+ + ++ + VI+ TH
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD----RDSLGALSK-ALKEFEGGVIIITH 956
Query: 1552 SMNEAQALCTRIGIMVGGQLRCIG 1575
S + L + + G++ G
Sbjct: 957 SAEFTKNLTEEVWAVKDGRMTPSG 980
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 582 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 620
+R LSGG K KL L +++LDEPT+ +D S+
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL 937
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 30/161 (18%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISML----VGLIPPTTGDALVFGKNITADMDEI 524
+N QL L + + G NG GKST + V P V+ + D+D
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVY---VEHDIDGT 507
Query: 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADK-VNIVVR 583
V D +F G KE + + ++ E G D+ + +
Sbjct: 508 HSDTSV---LDFVFESGV------------GTKEAIKDKLI-----EFGFTDEXIAXPIS 547
Query: 584 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 624
ALSGG K KL+L A++ ++ +++LDEPT+ +D ++ + W
Sbjct: 548 ALSGGWKXKLALARAVLRNADILLLDEPTNHLD--TVNVAW 586
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 1333 NEDIDVQVERNRVLSG--SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFG 1390
N D++ + L G + AI+ + N YPG +K + + F
Sbjct: 648 NTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPG----TSKPQITDINFQCSLSSRIA 703
Query: 1391 FLGTNGAGKTTTLSMISGEEYPTDGTAF 1418
+G NGAGK+T +++++GE PT G +
Sbjct: 704 VIGPNGAGKSTLINVLTGELLPTSGEVY 731
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1470 DVVMEKLVEFDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1525
+ + +KL+EF P LSGG K KL++A A++ + I++LDEP+ +D +
Sbjct: 526 EAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTV 582
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 482 LALLGHNGAGKSTTISMLVGLIPPTTGD 509
+A++G NGAGKST I++L G + PT+G+
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGE 729
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 582 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 620
+R LSGG K KL L +++LDEPT+ +D S+
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL 937
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
LSGG K KL +A P +++LDEP+ +D R +S+ + ++ + VI+ TH
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD----RDSLGALSK-ALKEFEGGVIIITH 956
Query: 1552 SMNEAQALCTRIGIMVGGQ 1570
S + L + + G+
Sbjct: 957 SAEFTKNLTEEVWAVKDGR 975
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 30/161 (18%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISML----VGLIPPTTGDALVFGKNITADMDEI 524
+N QL L + + G NG GKST + V P V+ + D+D
Sbjct: 445 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVY---VEHDIDGT 501
Query: 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADK-VNIVVR 583
V D +F G KE + + ++ E G D+ + +
Sbjct: 502 HSDTSV---LDFVFESGV------------GTKEAIKDKLI-----EFGFTDEXIAXPIS 541
Query: 584 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 624
ALSGG K KL+L A++ ++ +++LDEPT+ +D ++ + W
Sbjct: 542 ALSGGWKXKLALARAVLRNADILLLDEPTNHLD--TVNVAW 580
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 1333 NEDIDVQVERNRVLSG--SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFG 1390
N D++ + L G + AI+ + N YPG +K + + F
Sbjct: 642 NTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPG----TSKPQITDINFQCSLSSRIA 697
Query: 1391 FLGTNGAGKTTTLSMISGEEYPTDGTAF 1418
+G NGAGK+T +++++GE PT G +
Sbjct: 698 VIGPNGAGKSTLINVLTGELLPTSGEVY 725
Score = 37.7 bits (86), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1470 DVVMEKLVEFDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1525
+ + +KL+EF P LSGG K KL++A A++ + I++LDEP+ +D +
Sbjct: 520 EAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTV 576
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 482 LALLGHNGAGKSTTISMLVGLIPPTTGD 509
+A++G NGAGKST I++L G + PT+G+
Sbjct: 696 IAVIGPNGAGKSTLINVLTGELLPTSGE 723
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 582 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 620
+R LSGG K KL L +++LDEPT+ +D S+
Sbjct: 893 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL 931
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
LSGG K KL +A P +++LDEP+ +D R +S+ + ++ + VI+ TH
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD----RDSLGALSK-ALKEFEGGVIIITH 950
Query: 1552 SMNEAQALCTRIGIMVGGQ 1570
S + L + + G+
Sbjct: 951 SAEFTKNLTEEVWAVKDGR 969
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 21/144 (14%)
Query: 1448 LTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL-LKHAKKPSFTLSGGNKRKLSVAIAM 1506
+TV++ L+ +A I + +E L + L +P+ TLSGG +++ +A +
Sbjct: 505 MTVEDALDFFASIPKIKRK------LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAEL 558
Query: 1507 ---IGDPPIVILDEPSTGM--DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCT 1561
+ ILDEP+TG+ D IA+ + +V+ RL G T V++ H+++ +
Sbjct: 559 HRRSNGRTLYILDEPTTGLHVDDIAR--LLDVLHRL-VDNGDT-VLVIEHNLDVIKTADY 614
Query: 1562 RI-----GIMVGGQLRCIGSPQHL 1580
I G GGQ+ +G+P+ +
Sbjct: 615 IIDLGPEGGDRGGQIVAVGTPEEV 638
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.4 bits (80), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 21/144 (14%)
Query: 1448 LTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL-LKHAKKPSFTLSGGNKRKLSVAIAM 1506
+TV++ L+ +A I + +E L + L +P+ TLSGG +++ +A +
Sbjct: 807 MTVEDALDFFASIPKIKRK------LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAEL 860
Query: 1507 ---IGDPPIVILDEPSTGM--DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCT 1561
+ ILDEP+TG+ D IA+ + +V+ RL G T V++ H+++ +
Sbjct: 861 HRRSNGRTLYILDEPTTGLHVDDIAR--LLDVLHRL-VDNGDT-VLVIEHNLDVIKTADY 916
Query: 1562 RI-----GIMVGGQLRCIGSPQHL 1580
I G GGQ+ +G+P+ +
Sbjct: 917 IIDLGPEGGDRGGQIVAVGTPEEV 940
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 21/143 (14%)
Query: 1449 TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL-LKHAKKPSFTLSGGNKRKLSVAIAM- 1506
TV++ L+ +A I + +E L + L +P+ TLSGG +++ +A +
Sbjct: 808 TVEDALDFFASIPKIKRK------LETLYDVGLGYXKLGQPATTLSGGEAQRVKLAAELH 861
Query: 1507 --IGDPPIVILDEPSTGM--DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTR 1562
+ ILDEP+TG+ D IA+ + +V+ RL G T V++ H+++ +
Sbjct: 862 RRSNGRTLYILDEPTTGLHVDDIAR--LLDVLHRL-VDNGDT-VLVIEHNLDVIKTADYI 917
Query: 1563 I-----GIMVGGQLRCIGSPQHL 1580
I G GGQ+ +G+P+ +
Sbjct: 918 IDLGPEGGDRGGQIVAVGTPEEV 940
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.9 bits (76), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 1448 LTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL-LKHAKKPSFTLSGGNKRKLSVAIAM 1506
++++E E + I GV Y + LV+ L +P+ TLSGG +++ +A +
Sbjct: 825 MSIEEAAEFFEPIAGVHRY------LRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASEL 878
Query: 1507 IGDPP---IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1554
+ ILDEP+TG+ R + VI+ L +G T VI+ H+++
Sbjct: 879 QKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGL-VDKGNT-VIVIEHNLD 927
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.9 bits (76), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 1487 KPSFTLSGGNKRKLSVAIAMIGDPP---IVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
+P+ TLSGG +++ +A + + ILDEP+ G+ R + EV+ RL R G
Sbjct: 801 QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GN 859
Query: 1544 TAVILTTHSMNEAQALCTRI-----GIMVGGQLRCIGSPQHL 1580
T VI+ H+++ + I G GG + G+P+ +
Sbjct: 860 T-VIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEI 900
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And Amp-Pnp
Length = 359
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 1422 KDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI-KGVAEYRMDDVVME----KL 1476
KD+ LI ++ AL + + EL + I E + +VV+ K+
Sbjct: 194 KDLEKAKDFTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKV 253
Query: 1477 VEFDLLKHAKKPSFTLSGGNK------RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
F + + ++P LSGG + +L++++ + G+ ++ILDEP+ +D +R +
Sbjct: 254 RLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL 313
Query: 1531 WEVISRLSTRQGKTAVILTTH 1551
++ R + + VIL +H
Sbjct: 314 ITIMERYLKKIPQ--VILVSH 332
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 1422 KDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI-KGVAEYRMDDVVME----KL 1476
KD+ LI ++ AL + + EL + I E + +VV+ K+
Sbjct: 9 KDLEKAKDFTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKV 68
Query: 1477 VEFDLLKHAKKPSFTLSGGNK------RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
F + + ++P LSGG + +L++++ + G+ ++ILDEP+ +D +R +
Sbjct: 69 RLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL 128
Query: 1531 WEVISRLSTRQGKTAVILTTH 1551
++ R + + VIL +H
Sbjct: 129 ITIMERYLKKIPQ--VILVSH 147
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 1422 KDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI-KGVAEYRMDDVVME----KL 1476
KD+ LI ++ AL + + EL + I E + +VV+ K+
Sbjct: 14 KDLEKAKDFTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKV 73
Query: 1477 VEFDLLKHAKKPSFTLSGGNK------RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
F + + ++P LSGG + +L++++ + G+ ++ILDEP+ +D +R +
Sbjct: 74 RLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL 133
Query: 1531 WEVISRLSTRQGKTAVILTTH 1551
++ R + + VIL +H
Sbjct: 134 ITIMERYLKKIPQ--VILVSH 152
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In Complex
With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In Complex
With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In Complex
With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In Complex
With Amp- Pnp
Length = 339
Score = 30.8 bits (68), Expect = 6.7, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 1416 TAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI-KGVAEYRMDDVVME 1474
TA+ +++ LI ++ AL + + EL + I E + +VV+
Sbjct: 168 TAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVR 227
Query: 1475 ----KLVEFDLLKHAKKPSFTLSGGNK------RKLSVAIAMIGDPPIVILDEPSTGMDP 1524
K+ F + + ++P LSGG + +L++++ + G+ ++ILDEP+ +D
Sbjct: 228 AEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDE 287
Query: 1525 IAKRFMWEVISRLSTRQGKTAVILTTH 1551
+R + ++ R + + VIL +H
Sbjct: 288 ERRRKLITIMERYLKKIPQ--VILVSH 312
>pdb|2AU3|A Chain A, Crystal Structure Of The Aquifex Aeolicus Primase (Zinc
Binding And Rna Polymerase Domains)
Length = 407
Score = 30.8 bits (68), Expect = 7.4, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 1427 DPKAARRL-IGYCPQFDALLEYLTVQEHLELYARIKGV 1463
DPK AR+ +GY P +AL++ L + LE Y K +
Sbjct: 136 DPKVARKFDLGYAPSSEALVKVLKENDLLEAYLETKNL 173
>pdb|3LWJ|A Chain A, Crystal Structure Of Putative Tetr-family Transcriptional
Regulator (yp_752756.1) From Syntrophomonas Wolfei Str.
Goettingen At 2.07 A Resolution
Length = 202
Score = 30.8 bits (68), Expect = 7.7, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 700 IPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSK---VEADATE---DTDY 753
I + +SEVGT + + +++ + I S+S+ VE D E +T
Sbjct: 35 IRDIIALSEVGTGTFYNYFVDKEDILKNLLEDFAKQIISSISEYYLVEKDLYERFIETKR 94
Query: 754 LGIESFGISVTTLEEVFLRVAGCNLDESECISQ 786
L E F + TL E++ RVAG + +C+ Q
Sbjct: 95 LTXEVFAQN-ETLSEIYSRVAGSSAPIDQCLKQ 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,959,471
Number of Sequences: 62578
Number of extensions: 1790391
Number of successful extensions: 4325
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3859
Number of HSP's gapped (non-prelim): 269
length of query: 1723
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1611
effective length of database: 7,964,601
effective search space: 12830972211
effective search space used: 12830972211
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)