Query 000284
Match_columns 1723
No_of_seqs 568 out of 6375
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 17:59:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000284.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_61-64//hhsearch_pdb/000284hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 676.6 54.9 222 448-678 414-647 (1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 674.0 63.4 224 448-676 386-617 (1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 577.2 36.4 206 1353-1582 356-563 (607)
4 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 567.3 32.9 206 1353-1582 286-493 (538)
5 2iw3_A Elongation factor 3A; a 1.0 1 1 562.2 37.2 194 448-667 434-630 (986)
6 3j16_B RLI1P; ribosome recycli 1.0 1 1 541.0 25.7 193 1374-1583 361-560 (608)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 539.5 36.0 208 1353-1582 268-477 (538)
8 3ux8_A Excinuclease ABC, A sub 1.0 1 1 527.7 34.0 213 453-667 19-293 (670)
9 3tui_C Methionine import ATP-b 1.0 1 1 414.0 29.7 226 448-673 23-254 (366)
10 3tui_C Methionine import ATP-b 1.0 1 1 412.6 31.4 230 1351-1583 21-254 (366)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=676.56 Aligned_cols=222 Identities=26% Similarity=0.400 Sum_probs=193.1
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-CHHHHHC
Q ss_conf 309999679994376784110243457884791999987999947999999948999996229995614872-1898723
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526 (1723)
Q Consensus 448 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~-~~~~~r~ 526 (1723)
..|+++|++..|++++ ...+++|+||++++||.++++|++||||||++++|.|+++|++|+|.++|.|++. +.++.|+
T Consensus 414 g~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CCEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred CCEEEEEEEEECCCCC-CCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHH
T ss_conf 7679998554079999-874333318862288278998058985778888754565164486157996501125999850
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-----------CCCCCCCCCCCHHHHHHHHH
Q ss_conf 5299825888899999999999999950999788999999999993998-----------21063237889568999999
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-----------DKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 527 ~iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~-----------~~~~~~~~~LSGG~krkLsi 595 (1723)
++|||||++.||+. |++||+.+... ..+ ++++.+.++.+++. ........+||||||||+++
T Consensus 493 ~i~~v~Q~~~Lf~~-TI~eNI~~g~~--~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiai 565 (1321)
T 4f4c_A 493 NVAVVSQEPALFNC-TIEENISLGKE--GIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAI 565 (1321)
T ss_dssp HEEEECSSCCCCSE-EHHHHHHTTCT--TCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHH
T ss_pred CCCCCCCCCEEECC-CHHHHHHHHCC--CCH----HHHHHHHHHHCCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHH
T ss_conf 46665875332078-61678864155--220----999999998756546887088888607558988777778799999
Q ss_pred HHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHC
Q ss_conf 99972699686605998899999999999999997289699997179778985348999972987998359778986509
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675 (1723)
Q Consensus 596 A~Alig~p~vliLDEPTsGlDp~srr~iw~~l~~~~~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~~g 675 (1723)
|||++.+|++++||||||+||+.+.+.+.+.|.++.+|||+|++||++.-+.. ||+|++|++|++++.|+..+|.++-|
T Consensus 566 ARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~-aD~Iivl~~G~ive~Gth~eL~~~~g 644 (1321)
T 4f4c_A 566 ARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRN-ADLIISCKNGQVVEVGDHRALMAQQG 644 (1321)
T ss_dssp HHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTT-CSEEEEEETTEEEEEECHHHHHTTTC
T ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH-CCEEEEEECCEEECCCCHHHHHHHHH
T ss_conf 99872599989984554468878999999999998479889997363878986-89899963996513689999998532
Q ss_pred CCE
Q ss_conf 947
Q 000284 676 VGY 678 (1723)
Q Consensus 676 ~gy 678 (1723)
..+
T Consensus 645 ~y~ 647 (1321)
T 4f4c_A 645 LYY 647 (1321)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 799
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=674.01 Aligned_cols=224 Identities=25% Similarity=0.425 Sum_probs=191.0
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-CHHHHHC
Q ss_conf 309999679994376784110243457884791999987999947999999948999996229995614872-1898723
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526 (1723)
Q Consensus 448 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~-~~~~~r~ 526 (1723)
..|+++|+++.|+.+. ...+++|+||++++||+++++|+|||||||++++|.|+++|++|+|.++|.|+.. +....|+
T Consensus 386 g~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CCEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CEEEEEEEEEECCCCC-CCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHH
T ss_conf 7189999899769999-871012545897599889998999997999999980788999738999999877579999986
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 529982588889999999999999995099978899999-----9999993--998210632378895689999999997
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV-----AEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIAL 599 (1723)
Q Consensus 527 ~iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v-----~~~l~~~--~L~~~~~~~~~~LSGG~krkLsiA~Al 599 (1723)
.+|+|||++.+|+. |++||+.+... ..+.+++.+.. .+.++.+ |++...+....+||||||||+++|+|+
T Consensus 465 ~i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal 541 (1284)
T 3g5u_A 465 IIGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541 (1284)
T ss_dssp HEEEECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHH
T ss_pred HEEEECCCCCCCCC-CHHHHHHCCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 54898688753776-69999745798--9999999999998296999974656334501478786599999999999999
Q ss_pred HCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHCC
Q ss_conf 26996866059988999999999999999972896999971797789853489999729879983597789865099
Q 000284 600 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGV 676 (1723)
Q Consensus 600 ig~p~vliLDEPTsGlDp~srr~iw~~l~~~~~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~~g~ 676 (1723)
+.+|++++||||||+||+.+++.+.+.+++.++|+|+|++||+++++.. ||||.+|++|++++.|++.+|.++.|.
T Consensus 542 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~ 617 (1284)
T 3g5u_A 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMREKGI 617 (1284)
T ss_dssp HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHHTTSH
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCH
T ss_conf 5299989997987777999999999999997399989999407789974-998999989999997889999867877
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=577.19 Aligned_cols=206 Identities=23% Similarity=0.320 Sum_probs=179.7
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHC
Q ss_conf 41999968999399875676412543459975880999994899949889999919987995189996850899968760
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~ 1432 (1723)
.+++++|++|.|++ ..+++++|++++||++||+|||||||||++++|+|+++|++|+|.+ .
T Consensus 356 ~~l~~~~l~~~~~~-------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------------~ 416 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS-------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------------D 416 (607)
T ss_dssp EEEEECCEEEECSS-------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------------C
T ss_pred EEEEEECEEEEECC-------EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE------------E
T ss_conf 28999130987443-------4899351532799899999999989999999996698888628999------------0
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 54399805898799999999999999970999055999999999874995201899899895699999999999069988
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1512 (1723)
Q Consensus 1433 ~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~i 1512 (1723)
.++||+||+..+.+.+||.|++...... +. ...+.+.++++.+++.+..++++.+||||||||++||+||+.+|++
T Consensus 417 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~l 492 (607)
T 3bk7_A 417 LTVAYKPQYIKAEYEGTVYELLSKIDSS-KL---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI 492 (607)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHH-HH---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSE
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHCC-CC---CHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHHCCCE
T ss_conf 2799980576677898499999753125-87---7899999999876993375499223799999999999999748998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEEC--CEEEEECCHHHHHH
Q ss_conf 99938799999999999999999987416996999943778889977579999989--99999559557976
Q 000284 1513 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1513 llLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~--G~l~~~gs~~~l~~ 1582 (1723)
|+|||||+|||+.+++.++++|+++..+.| .|||++||+++++..+|||+++|.+ |++...|+++++..
T Consensus 493 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEECCCCCEEEECCCHHHHHH
T ss_conf 999687447899999999999999997479-89999909899999869999999598306974289899975
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=567.33 Aligned_cols=206 Identities=23% Similarity=0.323 Sum_probs=178.9
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHC
Q ss_conf 41999968999399875676412543459975880999994899949889999919987995189996850899968760
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~ 1432 (1723)
.+++++|+++.|++ ..+++++|++++||++||+|||||||||++++|+|+.+|++|+|.+ .
T Consensus 286 ~~l~~~~l~~~~~~-------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------------~ 346 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS-------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------------D 346 (538)
T ss_dssp EEEEECCEEEEETT-------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------------C
T ss_pred EEEEEEEEEEEECC-------EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE------------C
T ss_conf 18999307999899-------8999074412899899998899999999999996799899718998------------7
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 54399805898799999999999999970999055999999999874995201899899895699999999999069988
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1512 (1723)
Q Consensus 1433 ~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~i 1512 (1723)
..+||+||+....+.+|+.|++...... +.. ..+.+.++++.+++.+..++++.+||||||||++||+||+.+|++
T Consensus 347 ~~i~~v~Q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~l 422 (538)
T 1yqt_A 347 LTVAYKPQYIKADYEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADI 422 (538)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSE
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHCC-CCC---HHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCE
T ss_conf 4699982677678888599999864036-887---899999999974991565399444899999999999999728998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEEC--CEEEEECCHHHHHH
Q ss_conf 99938799999999999999999987416996999943778889977579999989--99999559557976
Q 000284 1513 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1513 llLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~--G~l~~~gs~~~l~~ 1582 (1723)
|+|||||+|||+.+++.++++|+++.++.| .|||++||+++++..+|||+++|.+ |++.+.|+++++..
T Consensus 423 LlLDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 423 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCCCEEEECCCHHHHHH
T ss_conf 999398010899999999999999998679-89999939899999968999999088315740489899974
No 5
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=562.16 Aligned_cols=194 Identities=20% Similarity=0.247 Sum_probs=166.1
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCC
Q ss_conf 30999967999437678411024345788479199998799994799999994899999622999561487218987235
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~ 527 (1723)
..+...|++|.|+ .+.+++++||++.+||+++|+|+|||||||++++|+| |++ .|.+... +..
T Consensus 434 ~~L~~~~ls~~yg----~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~-----~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYG----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE-----ECR 496 (986)
T ss_dssp CEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT-----TSC
T ss_pred CEEEEEEEEEEEC----CEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC------CCC--CCCCCCC-----CEE
T ss_conf 5248953899989----9876741269981897899999999879999999948------986--7976635-----416
Q ss_pred EEEECCCC-CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 29982588-8899999999999999950999788999999999993998-210632378895689999999997269968
Q 000284 528 LGVCPQYD-ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 528 iG~cpQ~~-~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSGG~krkLsiA~Alig~p~v 605 (1723)
+++++|+. .+++.+||.|++.+ ...+. ++++.++++.+|+. +..++++.+||||||||++||+||+.+|++
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~l 569 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADI 569 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSE
T ss_pred EEEECCCCCCCCCCCCHHHHHHH--HHCCH-----HHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 99973564324557809999998--61279-----999999999869984464398020799999999999999649999
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEE-EECCH
Q ss_conf 660599889999999999999999728969999717977898534899997298799-83597
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLK-CCGSS 667 (1723)
Q Consensus 606 liLDEPTsGlDp~srr~iw~~l~~~~~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~-~~Gs~ 667 (1723)
++|||||+|||+.+++.++++|++ .|+|||++||++++++.+||||.+|.+|+++ ..|+.
T Consensus 570 LLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~ 630 (986)
T 2iw3_A 570 LLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNF 630 (986)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEEECCEEECCCCCH
T ss_conf 999797667999999999999986--7998999979889999868999999799442677999
No 6
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=540.96 Aligned_cols=193 Identities=22% Similarity=0.297 Sum_probs=164.9
Q ss_pred CEEEEEEEEEECC-----CEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCCCC
Q ss_conf 1254345997588-----09999948999498899999199879951899968508999687605439980589879999
Q 000284 1374 VAVHSLTFSVQAG-----ECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYL 1448 (1723)
Q Consensus 1374 ~av~~is~~v~~G-----ei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~~~iG~~pQ~~~l~~~l 1448 (1723)
.++++++|++.+| |++||+|||||||||++++|+|+.+|++|+. +. +..++|+||+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~------~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP------KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC------SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCC------CC------CCCEEEECCCCCCCCCC
T ss_conf 4468658997068514651899988889869999999965787878858------66------77379860544445786
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
Q ss_conf 99999999999709990559999999998749952018998998956999999999990699889993879999999999
Q 000284 1449 TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1528 (1723)
Q Consensus 1449 Tv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~illLDEPt~GLDp~~r~ 1528 (1723)
|++|++. ...++... ..+.+.++++.++|.+.+++++.+||||||||++||+||+.+|++|+|||||+|||+.++.
T Consensus 429 tv~e~~~--~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~ 504 (608)
T 3j16_B 429 TVRQLFF--KKIRGQFL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRI 504 (608)
T ss_dssp BHHHHHH--HHCSSTTT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHH
T ss_pred CHHHHHH--HHHHCCCC--CHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
T ss_conf 6999998--77530324--6899999998749834651993238999999999999997389999998988889999999
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEEC--CEEEEECCHHHHHHH
Q ss_conf 9999999987416996999943778889977579999989--999995595579761
Q 000284 1529 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1529 ~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~--G~l~~~gs~~~l~~~ 1583 (1723)
.++++|+++..+.| .|||++||+++++..+|||+++|++ |++.+.|+|+++...
T Consensus 505 ~i~~ll~~l~~~~g-~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 505 ICSKVIRRFILHNK-KTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCCCEEEECCCHHHHHHH
T ss_conf 99999999997579-989999688999998689999995898737742986998630
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=539.51 Aligned_cols=208 Identities=23% Similarity=0.273 Sum_probs=176.1
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHC
Q ss_conf 41999968999399875676412543459975880999994899949889999919987995189996850899968760
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~ 1432 (1723)
.++++++++|.|++ ..++..+|++++||++||+|||||||||++++|+|+.+|++|+|.+.+
T Consensus 268 ~~l~~~~l~~~~~~-------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~----------- 329 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD-------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK----------- 329 (538)
T ss_dssp EEEEECCEEEEETT-------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-----------
T ss_pred CEEEECCEEEEECC-------EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------
T ss_conf 06998233999798-------899826646889989999999999899999999578889981899998-----------
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 54399805898799999999999999970999055999999999874995201899899895699999999999069988
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1512 (1723)
Q Consensus 1433 ~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~i 1512 (1723)
+.++|+||+......+|++|++...... .... ....+.++++.+++.+..++++.+||||||||++||+||+.+|++
T Consensus 330 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~l 406 (538)
T 3ozx_A 330 QILSYKPQRIFPNYDGTVQQYLENASKD-ALST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADL 406 (538)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHCSS-TTCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEEEECHHCCCCCCCCHHHHHHHHHHH-CCCH--HHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCE
T ss_conf 4567614000345477799999875531-1211--699999999875997786289322799999999999999708998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEEC--CEEEEECCHHHHHH
Q ss_conf 99938799999999999999999987416996999943778889977579999989--99999559557976
Q 000284 1513 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1513 llLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~--G~l~~~gs~~~l~~ 1582 (1723)
|+|||||+|||+.+++.++++|++++++.| .|||++||+++++..+||||++|.+ |+....+++..+..
T Consensus 407 LlLDEPT~gLD~~~~~~i~~~l~~l~~~~g-~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 407 YVLDQPSSYLDVEERYIVAKAIKRVTRERK-AVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCCCEECCCCCHHHHHH
T ss_conf 999698657999999999999999997389-89999958899999968999999698510116798477887
No 8
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=527.68 Aligned_cols=213 Identities=17% Similarity=0.266 Sum_probs=158.6
Q ss_pred EEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHH---------------------HHHHCCCCCC-----
Q ss_conf 96799943767841102434578847919999879999479999---------------------9994899999-----
Q 000284 453 RKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTI---------------------SMLVGLIPPT----- 506 (1723)
Q Consensus 453 ~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll---------------------~iL~Gl~~pt----- 506 (1723)
++++|.|... ....+|+|+||++++||+++|+||||||||||+ +++.|+..|+
T Consensus 19 ~~~~~~~~~~-~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~ 97 (670)
T 3ux8_A 19 SHMDKIIVKG-ARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIE 97 (670)
T ss_dssp ---CEEEEEE-ECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEE
T ss_pred CCCCEEEECC-CCCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEE
T ss_conf 8763589768-776402343899879989999899999988871510123211100011002445553034567756321
Q ss_pred --CCEEEECCCCCCCCH--------------HHHHCCEEEECCCC--CCCCCCCHHHHHHHHHHHCCCC--HHHHHH---
Q ss_conf --622999561487218--------------98723529982588--8899999999999999950999--788999---
Q 000284 507 --TGDALVFGKNITADM--------------DEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVK--EELLES--- 563 (1723)
Q Consensus 507 --sG~v~i~G~~i~~~~--------------~~~r~~iG~cpQ~~--~L~~~lTV~EhL~~~~~lkg~~--~~~~~~--- 563 (1723)
.|.+.++|.+..... ...+..+|+.+|.. ..++.+||.|++.++..+.... ....+.
T Consensus 98 ~~~~~i~~~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~ 177 (670)
T 3ux8_A 98 GLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILR 177 (670)
T ss_dssp SCCCEEEESSCC-----CCBHHHHTTCC-------------------------CC-------------------------
T ss_pred CCCCCEEECCCHHHCCCHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 35641574472010255000046511256677777531111234443334578599999975203643145677888899
Q ss_pred ---HHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCC--EEECCCCCCCCCHHHHHHHHHHHHHHH-CCCEE
Q ss_conf ---99999999399821-063237889568999999999726996--866059988999999999999999972-89699
Q 000284 564 ---VVAEMVDEVGLADK-VNIVVRALSGGMKRKLSLGIALIGDSK--VVILDEPTSGMDPYSMRLTWQLIKKIK-KGRII 636 (1723)
Q Consensus 564 ---~v~~~l~~~~L~~~-~~~~~~~LSGG~krkLsiA~Alig~p~--vliLDEPTsGlDp~srr~iw~~l~~~~-~~rti 636 (1723)
+..++++.+||.+. .++++.+||||||||++||+||+.+|+ +++|||||+||||.+++.++++|++++ +|.||
T Consensus 178 ~~~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tv 257 (670)
T 3ux8_A 178 EIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL 257 (670)
T ss_dssp -CHHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf 99999989997598434414970018999999999999996289987899979856899999999999999999749989
Q ss_pred EEECCCHHHHHHHCCEEEEE------ECCEEEEECCH
Q ss_conf 99717977898534899997------29879983597
Q 000284 637 LLTTHSMDEAEELGDRIAIM------ANGSLKCCGSS 667 (1723)
Q Consensus 637 iltTH~mdEa~~l~DrI~Im------~~G~l~~~Gs~ 667 (1723)
|++||++++++. ||||++| .+|++++.|++
T Consensus 258 i~vtHd~~~~~~-~d~ii~l~~g~~~~~G~i~~~g~~ 293 (670)
T 3ux8_A 258 IVVEHDEDTMLA-ADYLIDIGPGAGIHGGEVVAAGTP 293 (670)
T ss_dssp EEECCCHHHHHH-CSEEEEECSSSGGGCCSEEEEECH
T ss_pred EEEECCHHHHHH-CCEEEEECCCCCCCCCEEEEECCH
T ss_conf 999578799962-998999446665669889974089
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=413.98 Aligned_cols=226 Identities=31% Similarity=0.435 Sum_probs=206.2
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC----CHHH
Q ss_conf 309999679994376784110243457884791999987999947999999948999996229995614872----1898
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDE 523 (1723)
Q Consensus 448 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~----~~~~ 523 (1723)
+.|+++||+|.|+.+.+...||+|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.++.. +...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred CEEEEEEEEEEECCCCCCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHH
T ss_conf 65999848999389887737887469998489899999589955999999996699999629999999987589879998
Q ss_pred HHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 72352998258888999999999999999509997889999999999939982106323788956899999999972699
Q 000284 524 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 603 (1723)
Q Consensus 524 ~r~~iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p 603 (1723)
.|+.|||+||++.+++.+||+||+.+....++.+..+.++++.++++.+||.++.++.+.+||||||||++||+||+.+|
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P 182 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 182 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC
T ss_pred HHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 73868999278756888899999999998659987899999999999769934761994558999999999999996699
Q ss_pred CEEECCCCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 6866059988999999999999999972--896999971797789853489999729879983597789865
Q 000284 604 KVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 604 ~vliLDEPTsGlDp~srr~iw~~l~~~~--~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~ 673 (1723)
++++|||||+||||.+++.++++|++++ .|+|||++||+|+++..+||||++|.+|++++.|++.++...
T Consensus 183 ~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 999997987568999999999999999973799999995689999996999999989989997589999718
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=412.58 Aligned_cols=230 Identities=26% Similarity=0.453 Sum_probs=211.0
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCC-H-
Q ss_conf 86419999689993998756764125434599758809999948999498899999199879951899968508999-6-
Q 000284 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P- 1428 (1723)
Q Consensus 1351 ~~~~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~-~- 1428 (1723)
.+++|+++||+|.|+++. +...||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... .
T Consensus 21 ~~~mi~v~~ls~~y~~~~--~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGT--RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp --CCEEEEEEEEEEECSS--SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHH
T ss_pred CCCEEEEEEEEEEECCCC--CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH
T ss_conf 986599984899938988--773788746999848989999958995599999999669999962999999998758987
Q ss_pred --HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf --876054399805898799999999999999970999055999999999874995201899899895699999999999
Q 000284 1429 --KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1506 (1723)
Q Consensus 1429 --~~~~~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al 1506 (1723)
...|++|||+||++.+++.+||+||+.+....++.++.+.++++.++++.++|.+.+++++.+||||||||++||+||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL 178 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHH
T ss_conf 99987386899927875688889999999999865998789999999999976993476199455899999999999999
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 06998899938799999999999999999987416996999943778889977579999989999995595579761
Q 000284 1507 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1507 ~~~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~~~ 1583 (1723)
+.+|++|||||||+||||.+++.++++|++++++.| .|||++||+|+++..+||||++|++|++++.|+++++...
T Consensus 179 ~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g-~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 179 ASNPKVLLCDQATSALDPATTRSILELLKDINRRLG-LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC-CEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 669999999798756899999999999999997379-9999995689999996999999989989997589999718
Done!