Query 000285
Match_columns 1722
No_of_seqs 647 out of 2803
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 02:49:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1473 Nucleosome remodeling 100.0 1.7E-32 3.6E-37 340.2 20.9 504 514-1420 162-701 (1414)
2 KOG0484 Transcription factor P 99.5 2.1E-15 4.5E-20 146.0 2.4 66 28-93 13-78 (125)
3 KOG0485 Transcription factor N 99.5 2.6E-14 5.7E-19 154.2 9.8 64 29-92 101-164 (268)
4 KOG0850 Transcription factor D 99.5 7.2E-14 1.6E-18 153.1 10.8 77 20-96 110-186 (245)
5 KOG0842 Transcription factor t 99.5 1E-13 2.2E-18 160.4 9.0 66 28-93 149-214 (307)
6 KOG0488 Transcription factor B 99.5 1.1E-13 2.3E-18 162.9 8.8 66 28-93 168-233 (309)
7 KOG0489 Transcription factor z 99.4 1.1E-13 2.4E-18 160.1 5.1 70 28-97 155-224 (261)
8 PF02791 DDT: DDT domain; Int 99.4 2.3E-13 5E-18 124.2 5.7 59 542-600 2-61 (61)
9 KOG0843 Transcription factor E 99.4 1.8E-13 4E-18 145.0 3.8 63 31-93 101-163 (197)
10 smart00571 DDT domain in diffe 99.4 6.4E-13 1.4E-17 122.0 5.6 58 542-599 2-62 (63)
11 KOG2251 Homeobox transcription 99.4 9.6E-13 2.1E-17 144.1 7.5 68 27-94 32-99 (228)
12 KOG0492 Transcription factor M 99.3 4E-13 8.7E-18 144.6 4.1 70 31-100 143-212 (246)
13 KOG0844 Transcription factor E 99.3 6.4E-12 1.4E-16 141.1 11.3 60 31-90 180-239 (408)
14 KOG0494 Transcription factor C 99.3 1.2E-12 2.5E-17 144.5 4.3 61 35-95 144-204 (332)
15 KOG0487 Transcription factor A 99.3 2E-12 4.4E-17 149.9 3.8 63 30-92 233-295 (308)
16 KOG1029 Endocytic adaptor prot 99.2 1.2E-09 2.6E-14 134.5 25.1 21 922-942 721-742 (1118)
17 KOG0848 Transcription factor C 99.2 3.4E-12 7.5E-17 141.8 2.4 64 31-94 198-261 (317)
18 PF00046 Homeobox: Homeobox do 99.2 5.9E-12 1.3E-16 112.7 2.7 57 33-89 1-57 (57)
19 KOG4577 Transcription factor L 99.1 2.5E-10 5.4E-15 127.8 12.5 68 32-99 167-234 (383)
20 TIGR01565 homeo_ZF_HD homeobox 99.1 7.5E-11 1.6E-15 106.2 5.6 53 32-84 1-57 (58)
21 KOG1245 Chromatin remodeling c 99.1 8.5E-10 1.8E-14 149.8 16.1 230 927-1179 650-936 (1404)
22 KOG3802 Transcription factor O 99.1 2.4E-10 5.2E-15 134.9 8.9 62 31-92 293-354 (398)
23 KOG0493 Transcription factor E 99.0 7.5E-11 1.6E-15 130.5 3.0 57 33-89 247-303 (342)
24 KOG0491 Transcription factor B 99.0 7.2E-11 1.6E-15 123.5 1.3 64 31-94 99-162 (194)
25 COG5576 Homeodomain-containing 99.0 2.7E-10 5.7E-15 122.1 5.2 67 30-96 49-115 (156)
26 smart00389 HOX Homeodomain. DN 99.0 3E-10 6.4E-15 101.1 3.6 56 33-88 1-56 (56)
27 KOG0486 Transcription factor P 98.9 4.4E-10 9.5E-15 128.1 4.2 65 31-95 111-175 (351)
28 cd00086 homeodomain Homeodomai 98.9 5E-10 1.1E-14 100.4 3.5 56 34-89 2-57 (59)
29 KOG0847 Transcription factor, 98.9 3.5E-10 7.6E-15 122.6 1.6 64 30-93 165-228 (288)
30 PF15613 WHIM2: WSTF, HB1, Itc 98.9 1.4E-09 2.9E-14 89.9 3.6 38 1110-1147 1-38 (38)
31 KOG0483 Transcription factor H 98.9 8.1E-10 1.8E-14 122.2 2.9 61 32-92 50-110 (198)
32 KOG0490 Transcription factor, 98.8 9.5E-09 2.1E-13 116.5 7.2 64 29-92 57-120 (235)
33 PF15614 WHIM3: WSTF, HB1, Itc 98.7 6.6E-09 1.4E-13 88.7 3.8 36 1149-1184 1-37 (46)
34 KOG0849 Transcription factor P 98.6 1.1E-07 2.3E-12 114.9 9.1 66 28-93 172-237 (354)
35 KOG1168 Transcription factor A 98.5 7.2E-08 1.6E-12 108.6 2.7 63 28-90 305-367 (385)
36 PF15612 WHIM1: WSTF, HB1, Itc 98.4 1.9E-07 4.2E-12 82.1 4.5 48 928-975 3-50 (50)
37 PTZ00121 MAEBL; Provisional 98.2 8.3E-05 1.8E-09 98.0 21.7 13 1330-1342 1993-2005(2084)
38 PTZ00121 MAEBL; Provisional 98.1 0.00014 3.1E-09 95.9 21.9 11 1327-1337 2002-2012(2084)
39 PF05066 HARE-HTH: HB1, ASXL, 98.1 1.4E-06 3.1E-11 82.2 3.1 68 717-786 1-72 (72)
40 KOG4364 Chromatin assembly fac 98.1 0.00018 4E-09 89.5 20.1 18 63-80 41-58 (811)
41 PTZ00266 NIMA-related protein 98.0 0.00016 3.4E-09 97.1 20.4 7 174-180 233-239 (1021)
42 KOG0775 Transcription factor S 98.0 1.8E-05 3.9E-10 89.9 9.6 51 39-89 183-233 (304)
43 KOG1029 Endocytic adaptor prot 98.0 0.00031 6.7E-09 88.4 19.4 12 338-349 309-320 (1118)
44 KOG4364 Chromatin assembly fac 97.8 0.00073 1.6E-08 84.3 19.5 12 425-436 320-331 (811)
45 KOG0774 Transcription factor P 97.8 5.8E-05 1.2E-09 84.9 8.1 60 32-91 188-250 (334)
46 KOG2891 Surface glycoprotein [ 97.5 0.0077 1.7E-07 68.8 20.2 20 348-367 276-295 (445)
47 PF05672 MAP7: MAP7 (E-MAP-115 97.1 0.076 1.6E-06 58.4 21.0 9 326-334 13-21 (171)
48 KOG0490 Transcription factor, 97.0 0.00041 9E-09 78.9 3.6 65 28-92 149-213 (235)
49 PF05920 Homeobox_KN: Homeobox 96.7 0.00041 8.8E-09 58.7 -0.2 34 53-86 7-40 (40)
50 KOG2252 CCAAT displacement pro 96.6 0.0013 2.7E-08 81.8 3.3 58 30-87 418-475 (558)
51 KOG2891 Surface glycoprotein [ 96.4 0.16 3.4E-06 58.5 17.9 19 176-194 192-212 (445)
52 KOG1144 Translation initiation 96.1 0.11 2.4E-06 66.9 16.2 12 1459-1470 911-922 (1064)
53 PF05262 Borrelia_P83: Borreli 95.7 0.4 8.7E-06 60.8 18.7 47 160-206 17-69 (489)
54 KOG1144 Translation initiation 95.4 0.21 4.6E-06 64.4 14.8 24 1388-1411 898-921 (1064)
55 KOG1146 Homeobox protein [Gene 95.4 0.02 4.3E-07 77.3 6.0 62 31-92 902-963 (1406)
56 KOG0163 Myosin class VI heavy 95.2 0.48 1E-05 60.9 16.6 23 561-583 1065-1088(1259)
57 PF05262 Borrelia_P83: Borreli 95.0 1 2.3E-05 57.2 19.1 7 564-570 426-432 (489)
58 KOG0163 Myosin class VI heavy 95.0 0.96 2.1E-05 58.3 18.2 18 66-83 377-394 (1259)
59 KOG4661 Hsp27-ERE-TATA-binding 94.8 0.36 7.9E-06 60.1 13.9 6 198-203 366-371 (940)
60 KOG2072 Translation initiation 94.8 3.2 6.9E-05 54.7 22.5 17 182-198 388-404 (988)
61 KOG0742 AAA+-type ATPase [Post 93.4 9.5 0.00021 47.4 21.5 9 715-723 392-400 (630)
62 KOG2412 Nuclear-export-signal 93.1 1.6 3.6E-05 55.1 15.2 15 166-180 27-41 (591)
63 KOG2412 Nuclear-export-signal 91.8 2 4.2E-05 54.4 13.5 19 644-662 517-535 (591)
64 KOG3054 Uncharacterized conser 91.0 1.5 3.3E-05 50.3 10.5 26 553-578 201-227 (299)
65 COG3064 TolA Membrane protein 90.8 24 0.00052 42.4 20.1 14 645-658 344-357 (387)
66 PF13904 DUF4207: Domain of un 90.8 22 0.00049 42.3 20.6 13 494-506 235-247 (264)
67 KOG3054 Uncharacterized conser 90.7 1.9 4.2E-05 49.5 10.9 7 736-742 276-282 (299)
68 KOG1924 RhoA GTPase effector D 89.4 1.5 3.2E-05 57.1 9.8 10 630-639 838-847 (1102)
69 PRK00106 hypothetical protein; 88.1 50 0.0011 43.3 22.2 6 951-956 434-439 (535)
70 KOG3623 Homeobox transcription 87.8 3 6.4E-05 54.2 10.8 49 44-92 568-616 (1007)
71 PRK12704 phosphodiesterase; Pr 86.0 1.1E+02 0.0025 40.0 23.9 15 562-576 278-292 (520)
72 PRK12704 phosphodiesterase; Pr 84.5 72 0.0016 41.8 21.2 12 948-959 416-427 (520)
73 KOG2002 TPR-containing nuclear 83.2 12 0.00025 50.8 13.3 7 170-176 630-636 (1018)
74 KOG2072 Translation initiation 82.2 1.1E+02 0.0024 41.3 21.0 14 31-44 140-153 (988)
75 PF11569 Homez: Homeodomain le 82.2 0.48 1E-05 43.3 0.3 41 44-84 10-50 (56)
76 PF06524 NOA36: NOA36 protein; 81.4 1.7 3.8E-05 50.3 4.4 9 1306-1314 50-58 (314)
77 PRK00106 hypothetical protein; 81.4 1.9E+02 0.0042 38.1 23.5 6 640-645 352-357 (535)
78 PF10446 DUF2457: Protein of u 78.3 1.5 3.2E-05 54.5 2.8 15 1695-1709 89-103 (458)
79 KOG3654 Uncharacterized CH dom 78.3 2.1E+02 0.0046 36.7 21.1 31 630-666 621-651 (708)
80 PF00769 ERM: Ezrin/radixin/mo 77.7 1.1E+02 0.0024 36.2 17.9 10 590-599 190-199 (246)
81 KOG0773 Transcription factor M 76.6 1.9 4.1E-05 52.8 3.2 58 32-89 239-299 (342)
82 KOG2507 Ubiquitin regulatory p 76.6 26 0.00057 43.7 12.4 9 547-555 337-345 (506)
83 PF07946 DUF1682: Protein of u 76.4 8.7 0.00019 46.9 8.7 6 76-81 32-37 (321)
84 KOG0579 Ste20-like serine/thre 76.2 2.8E+02 0.006 37.1 27.0 17 171-187 622-638 (1187)
85 PF00769 ERM: Ezrin/radixin/mo 74.6 1.9E+02 0.0041 34.3 18.9 10 682-691 227-236 (246)
86 KOG1924 RhoA GTPase effector D 74.1 13 0.00029 49.0 9.5 20 187-206 574-593 (1102)
87 KOG1832 HIV-1 Vpr-binding prot 73.9 2.4 5.2E-05 55.9 3.1 26 931-956 663-688 (1516)
88 KOG2689 Predicted ubiquitin re 73.5 35 0.00075 40.6 11.9 14 461-474 163-176 (290)
89 KOG0943 Predicted ubiquitin-pr 73.0 3.2 6.9E-05 55.9 3.9 12 171-182 219-230 (3015)
90 KOG3119 Basic region leucine z 71.2 1.3E+02 0.0028 36.2 16.4 29 177-206 16-44 (269)
91 PF09756 DDRGK: DDRGK domain; 70.2 1.4 3.1E-05 49.7 0.0 31 553-583 100-131 (188)
92 PF04931 DNA_pol_phi: DNA poly 69.9 3.6 7.7E-05 56.0 3.6 7 1120-1126 302-308 (784)
93 KOG3654 Uncharacterized CH dom 69.8 23 0.00049 44.8 9.8 13 582-594 509-521 (708)
94 KOG3598 Thyroid hormone recept 69.3 69 0.0015 45.4 14.6 7 78-84 1739-1745(2220)
95 KOG1984 Vesicle coat complex C 67.5 1.6E+02 0.0035 40.2 17.1 47 1350-1399 807-853 (1007)
96 KOG3598 Thyroid hormone recept 66.4 2.1E+02 0.0045 41.2 17.9 6 253-258 2008-2013(2220)
97 COG4942 Membrane-bound metallo 65.6 2.8E+02 0.0061 35.4 18.1 9 641-649 409-417 (420)
98 PF06637 PV-1: PV-1 protein (P 64.3 1.6E+02 0.0034 36.8 15.0 8 567-574 417-424 (442)
99 PF05918 API5: Apoptosis inhib 63.9 2.3 4.9E-05 55.1 0.0 10 1439-1448 457-466 (556)
100 PF09726 Macoilin: Transmembra 63.2 5.4E+02 0.012 35.2 21.9 12 62-73 152-163 (697)
101 PF02029 Caldesmon: Caldesmon; 62.1 32 0.0007 44.4 9.5 9 568-576 390-398 (492)
102 PF04218 CENP-B_N: CENP-B N-te 61.3 7.5 0.00016 35.2 2.8 46 33-83 1-46 (53)
103 PF02029 Caldesmon: Caldesmon; 61.1 59 0.0013 42.1 11.5 7 83-89 13-19 (492)
104 KOG0742 AAA+-type ATPase [Post 60.4 4.7E+02 0.01 33.5 26.4 28 723-750 383-411 (630)
105 KOG0579 Ste20-like serine/thre 58.7 6E+02 0.013 34.2 25.8 27 572-599 970-996 (1187)
106 PLN03086 PRLI-interacting fact 58.5 46 0.001 43.7 10.1 11 1325-1335 529-539 (567)
107 PF04147 Nop14: Nop14-like fam 57.7 9.1 0.0002 52.5 4.0 7 1591-1597 254-260 (840)
108 PTZ00491 major vault protein; 57.6 2.4E+02 0.0052 38.8 16.4 8 174-181 420-427 (850)
109 KOG0127 Nucleolar protein fibr 53.9 7.9 0.00017 49.2 2.2 7 1614-1620 190-196 (678)
110 KOG4848 Extracellular matrix-a 53.1 4E+02 0.0087 30.5 16.7 10 443-452 202-211 (225)
111 TIGR01069 mutS2 MutS2 family p 52.4 3.2E+02 0.0069 37.7 17.0 14 557-570 692-705 (771)
112 PF13913 zf-C2HC_2: zinc-finge 51.2 4.9 0.00011 31.0 -0.0 23 1308-1334 3-25 (25)
113 PF04931 DNA_pol_phi: DNA poly 51.1 10 0.00023 51.6 2.9 6 1461-1466 560-565 (784)
114 KOG0982 Centrosomal protein Nu 50.4 6.6E+02 0.014 32.2 19.8 34 547-580 440-475 (502)
115 KOG4849 mRNA cleavage factor I 50.4 4.8E+02 0.01 32.3 15.7 13 188-200 249-261 (498)
116 PRK00409 recombination and DNA 50.1 2E+02 0.0044 39.6 14.7 17 556-572 702-718 (782)
117 KOG3130 Uncharacterized conser 49.7 11 0.00023 46.4 2.4 45 1253-1297 6-53 (514)
118 PF07888 CALCOCO1: Calcium bin 49.7 7.7E+02 0.017 32.8 22.4 33 460-492 427-459 (546)
119 PRK12705 hypothetical protein; 48.9 7.7E+02 0.017 32.6 20.8 8 696-703 375-382 (508)
120 TIGR01069 mutS2 MutS2 family p 48.4 4E+02 0.0087 36.8 16.9 11 643-653 697-707 (771)
121 PRK00409 recombination and DNA 48.3 4.9E+02 0.011 36.1 17.7 9 644-652 709-717 (782)
122 KOG0612 Rho-associated, coiled 47.7 1.1E+03 0.024 34.1 23.9 15 1397-1411 1176-1190(1317)
123 PRK12705 hypothetical protein; 45.8 8.5E+02 0.018 32.2 22.2 7 764-770 352-358 (508)
124 KOG1830 Wiskott Aldrich syndro 45.3 7.7E+02 0.017 31.5 17.8 9 47-55 121-129 (518)
125 COG4942 Membrane-bound metallo 44.4 8.1E+02 0.018 31.5 18.7 9 554-562 308-316 (420)
126 KOG2507 Ubiquitin regulatory p 44.0 1.8E+02 0.0039 36.8 11.3 7 644-650 410-416 (506)
127 KOG0112 Large RNA-binding prot 43.9 1.2E+02 0.0026 41.5 10.4 35 160-194 493-527 (975)
128 KOG2229 Protein required for a 43.1 19 0.0004 45.9 3.1 101 644-770 50-151 (616)
129 KOG2038 CAATT-binding transcri 40.7 25 0.00053 46.8 3.7 24 945-968 496-519 (988)
130 COG2995 PqiA Uncharacterized p 40.2 18 0.00039 44.9 2.3 45 1266-1317 200-245 (418)
131 PRK13428 F0F1 ATP synthase sub 39.9 3.6E+02 0.0078 34.8 13.8 18 517-534 153-170 (445)
132 PF09731 Mitofilin: Mitochondr 39.3 1.1E+03 0.023 31.4 23.7 18 714-731 534-551 (582)
133 smart00017 OSTEO Osteopontin. 39.2 28 0.0006 40.4 3.4 30 1634-1674 44-73 (287)
134 KOG2357 Uncharacterized conser 35.3 1.3E+02 0.0029 37.8 8.5 7 222-228 190-196 (440)
135 COG5242 TFB4 RNA polymerase II 34.7 18 0.0004 41.5 1.1 31 1288-1318 255-285 (296)
136 KOG1189 Global transcriptional 34.5 32 0.00069 45.7 3.3 42 1279-1329 626-667 (960)
137 KOG0943 Predicted ubiquitin-pr 34.4 30 0.00065 47.5 3.1 15 1343-1357 1378-1393(3015)
138 PF12172 DUF35_N: Rubredoxin-l 34.2 13 0.00028 31.0 -0.1 26 1290-1315 8-33 (37)
139 KOG2253 U1 snRNP complex, subu 34.2 6.6E+02 0.014 33.8 14.6 37 929-969 599-635 (668)
140 PF09731 Mitofilin: Mitochondr 33.8 1.3E+03 0.028 30.7 22.5 14 582-595 495-508 (582)
141 KOG2357 Uncharacterized conser 31.6 1.6E+02 0.0034 37.2 8.3 12 77-88 136-147 (440)
142 KOG3634 Troponin [Cytoskeleton 31.5 2.6E+02 0.0056 34.4 9.8 11 583-593 239-249 (361)
143 TIGR00570 cdk7 CDK-activating 30.7 1.1E+03 0.024 29.2 15.1 8 342-349 62-69 (309)
144 KOG2253 U1 snRNP complex, subu 30.1 1.1E+03 0.024 31.8 15.6 28 153-180 38-65 (668)
145 KOG1103 Predicted coiled-coil 29.0 1.1E+03 0.025 29.2 14.3 34 934-969 487-520 (561)
146 PTZ00415 transmission-blocking 28.9 40 0.00087 48.2 2.9 15 1669-1683 152-166 (2849)
147 PRK15103 paraquat-inducible me 28.0 43 0.00094 42.6 3.0 30 1289-1318 217-246 (419)
148 KOG3064 RNA-binding nuclear pr 27.9 30 0.00066 40.6 1.5 10 1608-1617 178-187 (303)
149 KOG0681 Actin-related protein 27.9 6.3E+02 0.014 33.4 12.7 8 646-653 519-526 (645)
150 KOG3634 Troponin [Cytoskeleton 26.9 5.4E+02 0.012 31.9 11.3 8 547-554 239-246 (361)
151 KOG0262 RNA polymerase I, larg 26.6 46 0.00099 46.4 2.9 16 1257-1272 1065-1084(1640)
152 PF05071 NDUFA12: NADH ubiquin 26.6 52 0.0011 34.1 2.7 31 1112-1146 2-32 (105)
153 PRK02363 DNA-directed RNA poly 26.5 68 0.0015 34.5 3.6 77 722-801 8-84 (129)
154 KOG4691 Uncharacterized conser 26.5 7.2E+02 0.016 28.7 11.4 26 473-498 168-193 (227)
155 KOG2441 mRNA splicing factor/p 26.4 5.6E+02 0.012 32.4 11.4 126 290-426 218-364 (506)
156 KOG1996 mRNA splicing factor [ 25.4 1.9E+02 0.004 35.0 7.1 22 944-965 339-360 (378)
157 PTZ00415 transmission-blocking 25.1 45 0.00099 47.7 2.5 22 1605-1636 134-155 (2849)
158 TIGR02098 MJ0042_CXXC MJ0042 f 24.7 22 0.00048 29.7 -0.3 25 1294-1318 3-36 (38)
159 PF12128 DUF3584: Protein of u 23.8 2.5E+03 0.054 30.9 23.2 20 941-960 1066-1085(1201)
160 KOG1146 Homeobox protein [Gene 23.4 41 0.00088 47.4 1.6 61 31-91 443-503 (1406)
161 KOG3859 Septins (P-loop GTPase 21.9 1.5E+03 0.032 27.9 13.4 7 240-246 151-157 (406)
162 KOG0307 Vesicle coat complex C 21.8 2.5E+03 0.055 30.3 20.7 16 191-206 814-829 (1049)
163 KOG4246 Predicted DNA-binding 21.6 54 0.0012 43.9 2.1 17 190-206 106-122 (1194)
164 COG5406 Nucleosome binding fac 21.4 63 0.0014 42.1 2.5 29 1156-1184 594-622 (1001)
165 KOG2038 CAATT-binding transcri 21.0 92 0.002 41.8 3.9 7 547-553 288-294 (988)
166 PF09862 DUF2089: Protein of u 20.3 57 0.0012 34.3 1.6 24 1296-1319 1-24 (113)
167 PRK13428 F0F1 ATP synthase sub 20.3 1.9E+03 0.042 28.3 18.5 8 547-554 206-213 (445)
168 COG2433 Uncharacterized conser 20.2 1.7E+03 0.037 30.0 14.6 17 168-184 162-178 (652)
169 PF12128 DUF3584: Protein of u 20.2 2.9E+03 0.062 30.3 22.5 7 772-778 1024-1030(1201)
No 1
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.7e-32 Score=340.18 Aligned_cols=504 Identities=17% Similarity=0.157 Sum_probs=350.1
Q ss_pred ccCCCCCCCCccccCCCCCcCCCCCCchhhhhhhhhhHHhHhhhhhccccCCCCHHHHHHHhcc-CchhHHHHHHHHHHH
Q 000285 514 FRDSLSVFPPKTVRLKRPFSVQPWSDSEENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHD-HESRLLGEIHLALLK 592 (1722)
Q Consensus 514 ~R~~Lp~fPP~pv~LkrP~ps~Pl~vp~e~vgdLLmVw~FL~sF~~~L~LspfTLddf~~AL~~-~ds~LL~EiH~aLLk 592 (1722)
....+-..|+.-+++..|-++.++.+|.++|+++|.||+||++|+.+|.|+||+|+|||.||.. ..+.||+|+|++|||
T Consensus 162 ~~p~~~~e~~~vPpleLP~SSedi~IPne~Vm~alsIYevLRsF~~~LrisPF~feDFcaAL~~~~~ssLlaeVHvaLLr 241 (1414)
T KOG1473|consen 162 PNPDLEEEPPLVPPLELPESSEDIGIPNEHVMDALSIYEVLRSFSRQLRISPFRFEDFCAALISHEQSSLLAEVHVALLR 241 (1414)
T ss_pred CCCChhhccccCCCccCCCcccccCCcHHHHHHHHHHHHHHHhhcceEEeCCccHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 3334444566667788999999999999999999999999999999999999999999999995 777899999999999
Q ss_pred HHHhchhhhccCCCCCCCCcccccCCCCCCCchhhhhhhhcccchhhhhhccCCCCHHHHHHHHHHHhCC--CCcccccc
Q 000285 593 SIIKDIEDVARTPSTGLGMNQYCAANPEGGHPRIIEGAYAWGFDIRNWQQLLNPLTWHEIFRQLALSAGF--GPKLKKRS 670 (1722)
Q Consensus 593 ~ll~d~Ed~~~~~s~~~~~~~~~~~~~~~~~~~~~~~a~~wg~~~~~~~~~Ln~lTWpEiLR~~l~a~G~--g~~~~k~~ 670 (1722)
+|+++.+.. ++.+++... .+.+++-..+||.||||||||||+.|.|+ ||-|
T Consensus 242 A~lr~eD~~----~Thfs~~d~-------------------KdsvnI~l~liD~lTWPevLrqY~ea~~~ad~~v~---- 294 (1414)
T KOG1473|consen 242 ALLREEDRL----STHFSPLDS-------------------KDSVNIDLYLIDTLTWPEVLRQYFEADKHADGPVW---- 294 (1414)
T ss_pred HHhhhhhhc----ccccCcccc-------------------ccceeeeeehhccccHHHHHHHHHHhccccCcchh----
Confidence 999998743 456777543 34556667899999999999999999975 2222
Q ss_pred cccccCCCCcccchhhcccchhHHHHHHHHHhcCCCccccccccCccchhHHHHHHHhhhcCCCcchhHHHHHHHhhccc
Q 000285 671 SKWANGKGCEDIVSTIRNGSAAENAFAWMREKGLLLPRRSRHKLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLR 750 (1722)
Q Consensus 671 ~~~~~~~~~~d~~~~~~~g~~~~~a~~~m~~~g~~~~~~~~~rl~pgtvk~a~f~vls~~g~~gl~v~ela~~iqk~glr 750 (1722)
T Consensus 295 -------------------------------------------------------------------------------- 294 (1414)
T KOG1473|consen 295 -------------------------------------------------------------------------------- 294 (1414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCchhhHHHhhcccccchhccCCCcccccCCccCChhhHHHHHHHHHHHHHhhccCCCCCCCCCcccccccccCC
Q 000285 751 DLTTSKTPEASISVALTRDTKLFERIAPSTYCVRPAFRKDPADAEAILAAARKKIRIFENGFLGGEDADDVERDEDSECD 830 (1722)
Q Consensus 751 d~~ts~t~ea~i~~als~d~~Lfer~apsty~~r~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~ 830 (1722)
--++| |
T Consensus 295 -----------------------~~~n~--------f------------------------------------------- 300 (1414)
T KOG1473|consen 295 -----------------------DIFNP--------F------------------------------------------- 300 (1414)
T ss_pred -----------------------hhhcc--------c-------------------------------------------
Confidence 00000 0
Q ss_pred CCCCccccccCCCCCCCcccccccccccccccCCCCcccccccccccccccCCCccCCCCCccccccCcccccchhhhcc
Q 000285 831 VEEDPEVEDLATPSSANKNIDRYDEANTCLVSGKDNACNDVALSVQNEVDKGFSSFSLNDSKDARCQGTADNYVAVEDFG 910 (1722)
Q Consensus 831 ~~~d~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1722)
T Consensus 301 -------------------------------------------------------------------------------- 300 (1414)
T KOG1473|consen 301 -------------------------------------------------------------------------------- 300 (1414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccchhcccCCCchhhHhhcccccccCCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000285 911 ASHLNQENIEIDESKPGESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMWAEAQLDK 990 (1722)
Q Consensus 911 ~~~~~~~~~eides~~Ge~wl~~L~e~eY~dLsveeRL~aL~aL~dllL~t~sIR~~LEerlE~a~~LkKq~r~ea~edk 990 (1722)
+-+.+|...+|+.||+||+||||++|+++++|+.|+..-+.
T Consensus 301 -----------------------v~~~eY~~~pv~~klkILQ~L~Dq~l~~~s~R~e~~se~~~---------------- 341 (1414)
T KOG1473|consen 301 -----------------------VVEDEYPYRPVSNKLKILQFLCDQFLTVNSLRDEIDSEGEI---------------- 341 (1414)
T ss_pred -----------------------cccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccce----------------
Confidence 11456777899999999999999999999999998732210
Q ss_pred HHhHHHhhhcccCCCccCcchhhhhccccccCCCCCCCcccCC------CCCCCCCcccCcccccCCcccccCCCCCccc
Q 000285 991 SRLKEENITKLDFTPAMGSKAETHLASSAAEGGQSPLPVFVDN------KNEASPSLAEDQKPMFGSQVFQNHLSEFPNE 1064 (1722)
Q Consensus 991 RR~reE~~~r~~~~~~~~~K~e~~~~~~~~e~~~s~~~~~~~~------~~~~~p~~~~~~~~~~~~q~~~~~~~~~~~E 1064 (1722)
.=..+.+.++......+.+++....+.|+.-.|...+... ++-+...+++++..+..++
T Consensus 342 ---~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~------------ 406 (1414)
T KOG1473|consen 342 ---EYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKN------------ 406 (1414)
T ss_pred ---eecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhc------------
Confidence 1244677888878888888888777766655554433211 1111112222222111111
Q ss_pred cccccCCCCCCcchhhhhhhhhhhHhhHHHHHHHHHHHHHHhhhcccccCCccCCCCceeecccCCCCCCCCCCceEEec
Q 000285 1065 RTVAVQDPSTGLDNLATQQHGYASKRSRSQLKAYIAHMAEEMYVYRSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVEL 1144 (1722)
Q Consensus 1065 ~~~~~~d~~~~~~~~~~q~~~~~aek~~~Qlk~~i~~~~ee~~v~R~~pLG~DR~~nRYW~F~~~~s~~dp~~~rI~VE~ 1144 (1722)
...+|..|+|.||+++.||+. ..||+||.
T Consensus 407 -----------------------------------------~~~iR~~~iG~dr~gr~ywfi----------~rrl~Ie~ 435 (1414)
T KOG1473|consen 407 -----------------------------------------VDSIRHTPIGRDRYGRKYWFI----------SRRLRIEG 435 (1414)
T ss_pred -----------------------------------------ccceeccCCCcCccccchhce----------eeeeEEec
Confidence 133699999999999999998 67999999
Q ss_pred cCC--cEEEEcCHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHHHHhhccCccccC---------Cchhhhh-----
Q 000285 1145 HDG--TWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETSFKDKVRRNLQGIDTVG---------QSWTAIK----- 1208 (1722)
Q Consensus 1145 ~dg--~W~~ydt~eeld~Ll~~Ln~rG~RE~~Lk~~L~~~~~~i~~~m~~r~~~~~~~~---------~~~~~~~----- 1208 (1722)
-|+ .| ||+|.-+|-.||..|+.-=+ |..|...|....+.|..+|.-.+..++... ++..++-
T Consensus 436 ~det~l~-yysT~pqly~ll~cLd~~~~-e~~L~d~i~~~~ee~~rqM~lT~~ltne~R~~~~f~~~~h~r~~l~~~c~~ 513 (1414)
T KOG1473|consen 436 MDETLLW-YYSTCPQLYHLLRCLDRTYV-EMYLCDGIWERREEIIRQMGLTEELTNELRGAVDFGEDPHGRLFLGRDCAV 513 (1414)
T ss_pred CCCcEEE-EecCcHHHHHHHHHhchHHH-HHhhccchhhhHHHHHHhccchhhhhhhhhcccccccCCCcceeeecchhh
Confidence 998 56 99999999999999985555 999999999999999999998876655555 2221110
Q ss_pred ------hhhccccCCCCCCCCCCCCCCccCCCCCcccc--ccchhhhcccchHHHHHHHHhhhhHHHHHHhhhccccchh
Q 000285 1209 ------NEAAEMDVDPDFASSDSPSSTVCGLNSDTLET--SSSFRIELGRNEIEKKAALERFQDFQWWMWRECFNSLSLC 1280 (1722)
Q Consensus 1209 ------~~~~~~~~~~~~~~~~sp~s~~~~~~~d~~~~--~~s~~iE~g~~~~e~~~~~~r~~~f~~w~w~~~~~~~~l~ 1280 (1722)
|..-..+. +-+.+..+. +...+ |++..-| .-.|...+..+|++-. --+..+.+. -
T Consensus 514 ~lv~~iq~~~da~l---------~e~~l~~i~-k~v~~~~S~s~~~e---E~~e~ck~is~~~d~p--~~n~~~~~e--~ 576 (1414)
T KOG1473|consen 514 LLVLCIQVVEDAIL---------KEENLGDID-KVVLVLISASAHQE---EYVEICKAISQYWDLP--EGNLWRLRE--E 576 (1414)
T ss_pred HHhhhhhhhhhhhh---------hHhhhcchH-hhhhhhhhcccchH---HHHHHHHHHhhccccc--ccchhhhhh--c
Confidence 00000000 000000000 01011 1111111 1344566777777665 222222222 4
Q ss_pred hhhccccccccccccccccccccCccCCCCCccccccc---cCCCcccccchhhhhhhhhccCCcccccCCCcchHHHHH
Q 000285 1281 ASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSCHRTFG---AVDKSSKFSEHSIQCEEKTKLGLRDIHVSDSSLPLGIRL 1357 (1722)
Q Consensus 1281 a~k~Gkk~~~~~l~~C~~C~~~y~~~e~hC~~CH~tf~---~~d~e~~~~~h~~~c~~k~~~~~~~~~~~~~~lp~~l~~ 1357 (1722)
.+.++++.| .+.+++.-.....+.+...+.-|...+ ..++.++++..+. ....-.....+
T Consensus 577 ~~dqtf~~y--~ys~n~vse~~~~d~e~~dkk~~~~tkf~l~~nsd~~~~g~~~---------------t~gt~~~~~~~ 639 (1414)
T KOG1473|consen 577 GNDQTFMKY--YYSGNEVSEIFLTDSENADKKSHMQTKFALITNSDGVTAGNVT---------------TYGTGSQHKKL 639 (1414)
T ss_pred ccccchhhh--cccCCchhhccCCchhhhcccccccceecccccccceeccccc---------------cccchhhcchH
Confidence 456666666 667778777888888888888888764 1233333332111 00111224567
Q ss_pred HHHHHHHHHhcCChhHHhhhhchhHHHHHHhhhccCCCHHHHHHHHHHHHhhhhhhccccccc
Q 000285 1358 LKPLSAVIEAYIPPEALEASWTDERRKTWGMKLNMSSSAEEVLQLLTILESGIKRSYLSSNFE 1420 (1722)
Q Consensus 1358 LK~~l~~iEa~~p~eAl~~~W~~~~rk~W~~~l~~ass~~el~q~l~~le~~ik~d~L~~~~~ 1420 (1722)
+...|...++.+|...++..|-.- -|.|-..|..|-++.+|.-.|-.+.-+++-.-..+.||
T Consensus 640 ~~~t~~~~lSniP~s~~n~~w~~~-tkg~~lavs~A~~~~el~s~t~~~d~s~~~~~~~~~ss 701 (1414)
T KOG1473|consen 640 IARTLQQGLSNIPISYNNRKWPVY-TKGFELAVSAAADLAELSSETLEPDLSKRSNAFKAASS 701 (1414)
T ss_pred HHhhhhhhhccCchHhhhccchhh-ccchhhhhhccchHHHHHHhhcccchhhhhhhhccchh
Confidence 778889999999999999999876 99999999999999999999999999999888888777
No 2
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.53 E-value=2.1e-15 Score=145.99 Aligned_cols=66 Identities=33% Similarity=0.563 Sum_probs=61.8
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccC
Q 000285 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1722)
Q Consensus 28 ~~~~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~ 93 (1722)
..+++||-||+||..||..||+.|...|||++.+|++||.++.|++.+|||||||||+|.||+.+.
T Consensus 13 ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr~ 78 (125)
T KOG0484|consen 13 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQERA 78 (125)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHH
Confidence 445778889999999999999999999999999999999999999999999999999999997654
No 3
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.52 E-value=2.6e-14 Score=154.18 Aligned_cols=64 Identities=30% Similarity=0.460 Sum_probs=60.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhccc
Q 000285 29 GQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1722)
Q Consensus 29 ~~~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~ 92 (1722)
..+|||.||+|+..|+..||..|...+|++..+|..||.+|.||+.||+|||||||.||||+-.
T Consensus 101 ~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~a 164 (268)
T KOG0485|consen 101 DDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYA 164 (268)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHh
Confidence 3588899999999999999999999999999999999999999999999999999999999653
No 4
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.50 E-value=7.2e-14 Score=153.10 Aligned_cols=77 Identities=29% Similarity=0.513 Sum_probs=68.1
Q ss_pred CCCCCCCCCCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccCCCc
Q 000285 20 NNNNNHSNEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPK 96 (1722)
Q Consensus 20 ~~~~~~s~~~~~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~~~ 96 (1722)
........+++|.|+.||.++..||..|.+.|++++|+-.++|++||..||||.+||+|||||||.|.||..+.+..
T Consensus 110 ~~e~~~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g~~ 186 (245)
T KOG0850|consen 110 PSERRPNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQGSG 186 (245)
T ss_pred cceeccCCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcCCC
Confidence 33444455677888899999999999999999999999999999999999999999999999999999998874443
No 5
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.46 E-value=1e-13 Score=160.38 Aligned_cols=66 Identities=26% Similarity=0.525 Sum_probs=60.8
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccC
Q 000285 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1722)
Q Consensus 28 ~~~~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~ 93 (1722)
...++||.|..||..|+.+||+.|.+++|++.++|++||..|+||++||||||||||.|+||++..
T Consensus 149 ~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~d 214 (307)
T KOG0842|consen 149 GKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKD 214 (307)
T ss_pred ccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhh
Confidence 345677789999999999999999999999999999999999999999999999999999996543
No 6
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.45 E-value=1.1e-13 Score=162.92 Aligned_cols=66 Identities=33% Similarity=0.525 Sum_probs=62.1
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccC
Q 000285 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1722)
Q Consensus 28 ~~~~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~ 93 (1722)
..+|+|+.||.||..||..||+.|+++.|++..+|.+||..||||..||++||||||+||||+...
T Consensus 168 ~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 168 TPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 336778889999999999999999999999999999999999999999999999999999997755
No 7
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.41 E-value=1.1e-13 Score=160.12 Aligned_cols=70 Identities=36% Similarity=0.609 Sum_probs=63.7
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccCCCcc
Q 000285 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPKK 97 (1722)
Q Consensus 28 ~~~~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~~~~ 97 (1722)
.++..||.||.||..|+.+||+.|+.|+|++...|.+||..|.|+++||||||||||+||||..+.....
T Consensus 155 ~~~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~~~~ 224 (261)
T KOG0489|consen 155 TGGKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAKSSQ 224 (261)
T ss_pred ccCCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3456789999999999999999999999999999999999999999999999999999999976655443
No 8
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=99.41 E-value=2.3e-13 Score=124.17 Aligned_cols=59 Identities=58% Similarity=0.940 Sum_probs=55.6
Q ss_pred hhhhhhhhhHHhHhhhhhccccCCCCHHHHHHHhccCchh-HHHHHHHHHHHHHHhchhh
Q 000285 542 ENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHDHESR-LLGEIHLALLKSIIKDIED 600 (1722)
Q Consensus 542 e~vgdLLmVw~FL~sF~~~L~LspfTLddf~~AL~~~ds~-LL~EiH~aLLk~ll~d~Ed 600 (1722)
++|+++||||+||++|+++|+|+|||||+|++||.+.++. ||.|||++||++|+++.+|
T Consensus 2 ~~~~~~L~v~~Fl~~F~~~L~L~~ftlddf~~AL~~~~~~~ll~ei~~~LL~~l~~~~~d 61 (61)
T PF02791_consen 2 EAFGDLLMVWEFLNTFGEVLGLSPFTLDDFEQALLCNDPSGLLAEIHCALLKALLADEED 61 (61)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHcCCCcchhHHHHHHHHHHHHHhccCC
Confidence 6799999999999999999999999999999999987665 9999999999999999874
No 9
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.38 E-value=1.8e-13 Score=144.97 Aligned_cols=63 Identities=35% Similarity=0.564 Sum_probs=60.2
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccC
Q 000285 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1722)
Q Consensus 31 ~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~ 93 (1722)
+.||.||.||.+||..||..|+.++|-...+|+.||+.|+|++.||+|||||||.|.||.+..
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e 163 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQE 163 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999996644
No 10
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=99.36 E-value=6.4e-13 Score=122.05 Aligned_cols=58 Identities=45% Similarity=0.844 Sum_probs=55.3
Q ss_pred hhhhhhhhhHHhHhhhhhccccCCCC--HHHHHHHhccCchh-HHHHHHHHHHHHHHhchh
Q 000285 542 ENVGNLLMVWRFFITFADVLGLWPFT--LDEFVQAFHDHESR-LLGEIHLALLKSIIKDIE 599 (1722)
Q Consensus 542 e~vgdLLmVw~FL~sF~~~L~LspfT--Lddf~~AL~~~ds~-LL~EiH~aLLk~ll~d~E 599 (1722)
+.++++||||+||++|+++|+|+||+ |++|++||++.+++ +|.+||++||++|++|++
T Consensus 2 ~~~~d~l~V~eFl~~F~~~L~L~~f~~~l~~f~~Al~~~~~~~ll~ei~~~LL~~i~~d~~ 62 (63)
T smart00571 2 EAFGDLLMVYEFLRSFGKVLGLSPFRATLEDFIAALKCRDQNGLLTEVHVVLLRAILKDEG 62 (63)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHhcCCcchHHHHHHHHHHHHHHhCCC
Confidence 67999999999999999999999999 99999999987776 999999999999999876
No 11
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.36 E-value=9.6e-13 Score=144.06 Aligned_cols=68 Identities=32% Similarity=0.532 Sum_probs=63.7
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccCC
Q 000285 27 NEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1722)
Q Consensus 27 ~~~~~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~ 94 (1722)
...++.||.||+||..|+.+||.+|.+.+||+..+|++||.+|+|.+.+|||||.|||+|+|+++...
T Consensus 32 ~~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 32 SGPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred ccchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 45568899999999999999999999999999999999999999999999999999999999977654
No 12
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.35 E-value=4e-13 Score=144.56 Aligned_cols=70 Identities=33% Similarity=0.508 Sum_probs=62.9
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccCCCccccc
Q 000285 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPKKMRK 100 (1722)
Q Consensus 31 ~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~~~~~~~ 100 (1722)
..|+.||-||.+||..||+.|.+.+|+++.+|.+++..|.||++||+|||||||+|.||.+.....+...
T Consensus 143 ~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQeae~Ek~km 212 (246)
T KOG0492|consen 143 PNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQEAELEKLKM 212 (246)
T ss_pred CCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHHHHHHhhh
Confidence 3477899999999999999999999999999999999999999999999999999999987655444443
No 13
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.32 E-value=6.4e-12 Score=141.14 Aligned_cols=60 Identities=37% Similarity=0.597 Sum_probs=57.7
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhc
Q 000285 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKE 90 (1722)
Q Consensus 31 ~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~ 90 (1722)
.-||.||.||.+||..||+.|-+..|-+.+.|.+||..|+|.+..|+|||||||+|+||+
T Consensus 180 qmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQ 239 (408)
T KOG0844|consen 180 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 239 (408)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhh
Confidence 448889999999999999999999999999999999999999999999999999999994
No 14
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.30 E-value=1.2e-12 Score=144.50 Aligned_cols=61 Identities=36% Similarity=0.571 Sum_probs=57.2
Q ss_pred CCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccCCC
Q 000285 35 KRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPP 95 (1722)
Q Consensus 35 ~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~~ 95 (1722)
-||.||..|+..||..|+..+||+...|+.||.++.|.+.+|||||||||+||||..+.-.
T Consensus 144 ~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg 204 (332)
T KOG0494|consen 144 FRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWG 204 (332)
T ss_pred ccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcC
Confidence 3999999999999999999999999999999999999999999999999999999665443
No 15
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.26 E-value=2e-12 Score=149.87 Aligned_cols=63 Identities=38% Similarity=0.618 Sum_probs=60.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhccc
Q 000285 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1722)
Q Consensus 30 ~~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~ 92 (1722)
++.||||--+|..|+.+||+.|..|.|.+...|.+|++.|+||+|||+|||||||+|.||..+
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~r 295 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNR 295 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhh
Confidence 567888999999999999999999999999999999999999999999999999999999764
No 16
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.2e-09 Score=134.49 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=11.5
Q ss_pred ccCCCchh-hHhhcccccccCC
Q 000285 922 DESKPGES-WIQGLAEGDYSHL 942 (1722)
Q Consensus 922 des~~Ge~-wl~~L~e~eY~dL 942 (1722)
++|+.||| ||.|=-.|.+.=+
T Consensus 721 ~esq~aEPGWlaGel~gktGWF 742 (1118)
T KOG1029|consen 721 FESQAAEPGWLAGELRGKTGWF 742 (1118)
T ss_pred ehhccCCcccccceeccccCcC
Confidence 56666665 5655555554443
No 17
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.22 E-value=3.4e-12 Score=141.85 Aligned_cols=64 Identities=33% Similarity=0.569 Sum_probs=58.8
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccCC
Q 000285 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1722)
Q Consensus 31 ~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~ 94 (1722)
-+-+.|.++|..|+-+||+.|.-++|.++..+.+||..|||++|||+|||||||+|+||..+..
T Consensus 198 TkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk 261 (317)
T KOG0848|consen 198 TKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKK 261 (317)
T ss_pred cccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHH
Confidence 3445688999999999999999999999999999999999999999999999999999976554
No 18
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.20 E-value=5.9e-12 Score=112.75 Aligned_cols=57 Identities=46% Similarity=0.733 Sum_probs=55.2
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhh
Q 000285 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1722)
Q Consensus 33 rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr 89 (1722)
|++|+.||..|+..|+..|..++||+...+..||..|||+..+|++||||||+++||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 578999999999999999999999999999999999999999999999999999986
No 19
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.14 E-value=2.5e-10 Score=127.84 Aligned_cols=68 Identities=37% Similarity=0.558 Sum_probs=63.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccCCCcccc
Q 000285 32 GKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPKKMR 99 (1722)
Q Consensus 32 ~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~~~~~~ 99 (1722)
.||+||++|..||+.|+.+|+..+.|....|++|+..+||..++|||||||||+|.||.++...++..
T Consensus 167 nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RW 234 (383)
T KOG4577|consen 167 NKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRW 234 (383)
T ss_pred cCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHH
Confidence 48899999999999999999999999999999999999999999999999999999999988776433
No 20
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.12 E-value=7.5e-11 Score=106.23 Aligned_cols=53 Identities=17% Similarity=0.326 Sum_probs=51.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCC----CCHHHHHHHHHHhCCCCcceeeccccch
Q 000285 32 GKPKRQMKTPFQLETLEKAYASETY----PSESTRAELSEKLGLSDRQLQMWFCHRR 84 (1722)
Q Consensus 32 ~rr~Rt~fT~~Ql~~Le~~F~~~~y----Ps~~~R~eLA~~LgLserqVqVWFQNRR 84 (1722)
+||.||.||..|+..|+..|..++| |+...+.+||..|||++++|+|||||.+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 3789999999999999999999999 9999999999999999999999999975
No 21
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.08 E-value=8.5e-10 Score=149.76 Aligned_cols=230 Identities=20% Similarity=0.201 Sum_probs=123.3
Q ss_pred chhhHhhcccccccCCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HhHHHhhhc
Q 000285 927 GESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMWAEAQLD-KS-----RLKEENITK 1000 (1722)
Q Consensus 927 Ge~wl~~L~e~eY~dLsveeRL~aL~aL~dllL~t~sIR~~LEerlE~a~~LkKq~r~ea~ed-kR-----R~reE~~~r 1000 (1722)
.+..++.|.+..|.+|...+++.+|..||+.++.+..++++|+++.+....|+++....-+++ +. ..+.+...+
T Consensus 650 ~~~~~~kl~~~~v~dl~~~~~~~il~~~~~~l~~~~e~~d~i~~~~~~~~eLk~~~~~~~~~e~~a~~~~~~n~~e~~~~ 729 (1404)
T KOG1245|consen 650 HEELMEKLHTLLVFDLRAEEKDKILRQLCQRLLMLGEVVDHIEDRQQLTRELKQEITEKEKEENKAKSALEENRSESDKE 729 (1404)
T ss_pred hhhhhhhHHHHHHHhhhhhhhhhHHHHHHHHhccchhhhhhhhhHHHHHHHHhhhhhhhchHhHHhhhhHHhhHHHHHHh
Confidence 456788999999999999999999999999999999999999996655555555543311111 11 111122221
Q ss_pred ccCCCccCcchhhhhccccccCCCCCCCcccCCCCCCCCCcccCcccccCCcccccCCCCCccccccccCCCCCCcchhh
Q 000285 1001 LDFTPAMGSKAETHLASSAAEGGQSPLPVFVDNKNEASPSLAEDQKPMFGSQVFQNHLSEFPNERTVAVQDPSTGLDNLA 1080 (1722)
Q Consensus 1001 ~~~~~~~~~K~e~~~~~~~~e~~~s~~~~~~~~~~~~~p~~~~~~~~~~~~q~~~~~~~~~~~E~~~~~~d~~~~~~~~~ 1080 (1722)
+........+........+. .+..+.-......... ........+ | .. ....+..... ......
T Consensus 730 l~~~~~~~g~~~rk~~~~~~----e~~~~~~~~d~i~~~~---~~~~~~~~~-~--~~-~~~~~~~~~~-----~~~~~~ 793 (1404)
T KOG1245|consen 730 LDEVWNVEGKLDRKTEKKAP----ESDLDTENEDHIKAEK---EKRREDEEE-F--KG-FTRVEQEREE-----SDELES 793 (1404)
T ss_pred hhhhhccccccccccccccc----chhhcccchhhhcchh---hhhhhhhhh-h--cc-cccccccccc-----cchhhh
Confidence 11100000000000000000 0000000000000000 000000000 0 00 0000111111 111222
Q ss_pred hhhhhhhhHhhHHHHHHHHHHHHHHhhhcccccCCccCCCCceeecccCCCCCCCCCCceEEec----------------
Q 000285 1081 TQQHGYASKRSRSQLKAYIAHMAEEMYVYRSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVEL---------------- 1144 (1722)
Q Consensus 1081 ~q~~~~~aek~~~Qlk~~i~~~~ee~~v~R~~pLG~DR~~nRYW~F~~~~s~~dp~~~rI~VE~---------------- 1144 (1722)
........++.++....+.+++.....++|..|||+||+|||||||.. ..+++|+|.
T Consensus 794 ~~e~~~~~~~~~~~~~~~~eki~~~~~~~r~~~lG~DR~~rRYwvl~~-------~~~~~~ie~i~~~~~~~~~~~~~~~ 866 (1404)
T KOG1245|consen 794 IVEEERSIEEKRWAKIAFAEKILKASLVLRLNPLGKDRNYRRYWVLPD-------LVSGLFIEEIAKKEEIDYKCNGNED 866 (1404)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHhhccccccchhhceeeeeec-------cCcccchhHHhhhccccccchhhhh
Confidence 212222222333333445556666778999999999999999999973 134455542
Q ss_pred ---------------------------cC--------CcEEEEcCHHHHHHHHHhcCcCCcchHHHHHHH
Q 000285 1145 ---------------------------HD--------GTWRLIDTVEAFDALLSSLDARGTRESHLRIML 1179 (1722)
Q Consensus 1145 ---------------------------~d--------g~W~~ydt~eeld~Ll~~Ln~rG~RE~~Lk~~L 1179 (1722)
.+ ..|.+|++.++++.|+..++++|.+|..|...|
T Consensus 867 ~~~~~~~~e~~~~~~~~~~~~~~~~~gt~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~g~~e~~lse~l 936 (1404)
T KOG1245|consen 867 DEKASEDREYSLEASNTTNAAMNLQNGTDQKTPKTKQTRWFLVSIQEQEKELLYTLNPRGILESILSEGL 936 (1404)
T ss_pred hcccchhhcccccccchhhhhhcccccccccCCcchhhhHHHHHhhHHHHhhhhhcCccchHHHHHhhhh
Confidence 01 169999999999999999999999999999987
No 22
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.07 E-value=2.4e-10 Score=134.88 Aligned_cols=62 Identities=26% Similarity=0.476 Sum_probs=59.4
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhccc
Q 000285 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1722)
Q Consensus 31 ~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~ 92 (1722)
|+||+||+|+...+..||.+|..|+.|+..+...||.+|+|...+|+|||||||.|.||...
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRITP 354 (398)
T ss_pred cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCCC
Confidence 78889999999999999999999999999999999999999999999999999999999544
No 23
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.04 E-value=7.5e-11 Score=130.48 Aligned_cols=57 Identities=37% Similarity=0.622 Sum_probs=55.7
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhh
Q 000285 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1722)
Q Consensus 33 rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr 89 (1722)
||.||.||.+||..|+..|+.|+|+....|.+||..|||.+.||+|||||+|+|-||
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKK 303 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKK 303 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhh
Confidence 678999999999999999999999999999999999999999999999999999999
No 24
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.01 E-value=7.2e-11 Score=123.50 Aligned_cols=64 Identities=36% Similarity=0.591 Sum_probs=59.5
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccCC
Q 000285 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENP 94 (1722)
Q Consensus 31 ~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~ 94 (1722)
++++.||.|+..|+..|+..|+.+.|.+.++|.+||..|+|+++||+.||||||+|.||..+..
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~ 162 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNN 162 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 3466799999999999999999999999999999999999999999999999999999976543
No 25
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.01 E-value=2.7e-10 Score=122.14 Aligned_cols=67 Identities=34% Similarity=0.550 Sum_probs=61.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccCCCc
Q 000285 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPPK 96 (1722)
Q Consensus 30 ~~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~~~ 96 (1722)
...+++|++.|..|+.+|+..|..+|||+..+|..|+..|+|+++-|||||||||++.|+.......
T Consensus 49 ~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~~ 115 (156)
T COG5576 49 SPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVE 115 (156)
T ss_pred CcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccchh
Confidence 4668889999999999999999999999999999999999999999999999999999996554433
No 26
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=98.98 E-value=3e-10 Score=101.09 Aligned_cols=56 Identities=52% Similarity=0.798 Sum_probs=52.7
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhh
Q 000285 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDK 88 (1722)
Q Consensus 33 rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~K 88 (1722)
++.|+.|+..|+..|+..|..++||+..++..||..+||+..+|++||+|||.+.+
T Consensus 1 ~k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 1 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 35678899999999999999999999999999999999999999999999998864
No 27
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=98.94 E-value=4.4e-10 Score=128.14 Aligned_cols=65 Identities=31% Similarity=0.520 Sum_probs=61.2
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccCCC
Q 000285 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKENPP 95 (1722)
Q Consensus 31 ~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~~~ 95 (1722)
|+||-||.||.+|+..||..|.++.||+..+|+++|-.++|++.+|+|||.|||+||||..+...
T Consensus 111 KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrErN~~ 175 (351)
T KOG0486|consen 111 KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ 175 (351)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhhhHH
Confidence 77888999999999999999999999999999999999999999999999999999999765443
No 28
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=98.94 E-value=5e-10 Score=100.39 Aligned_cols=56 Identities=48% Similarity=0.801 Sum_probs=54.0
Q ss_pred CCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhh
Q 000285 34 PKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1722)
Q Consensus 34 r~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr 89 (1722)
+.|+.|+..|+.+|+..|..++||+..++..||..+||+..+|++||+|||.+.++
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999999999999999999999999999999887
No 29
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=98.91 E-value=3.5e-10 Score=122.61 Aligned_cols=64 Identities=30% Similarity=0.518 Sum_probs=59.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccC
Q 000285 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1722)
Q Consensus 30 ~~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~ 93 (1722)
++++..|.+|+..|+..|+..|.+.+|+-..+|.+||..+||++.||+|||||||.||||+...
T Consensus 165 G~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 165 GQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred ccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhcc
Confidence 4667789999999999999999999999999999999999999999999999999999996543
No 30
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=98.88 E-value=1.4e-09 Score=89.86 Aligned_cols=38 Identities=45% Similarity=0.726 Sum_probs=32.5
Q ss_pred ccccCCccCCCCceeecccCCCCCCCCCCceEEeccCC
Q 000285 1110 RSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHDG 1147 (1722)
Q Consensus 1110 R~~pLG~DR~~nRYW~F~~~~s~~dp~~~rI~VE~~dg 1147 (1722)
|.+|||+||++||||||..+.+.+...+++||||..++
T Consensus 1 R~~pLG~DR~~NrYwwf~~s~~~~~~~~~~~~v~~~~~ 38 (38)
T PF15613_consen 1 RLKPLGKDRYGNRYWWFSSSSSNSQYYNGGRFVEQGPD 38 (38)
T ss_pred CcccccccCCCceEEEEecccccCCCCCceEEEEeCCC
Confidence 78999999999999999766666778899999997653
No 31
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=98.87 E-value=8.1e-10 Score=122.19 Aligned_cols=61 Identities=34% Similarity=0.531 Sum_probs=56.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhccc
Q 000285 32 GKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1722)
Q Consensus 32 ~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~ 92 (1722)
...++.+||..|+..||..|+.+.|+....+..||..|||.+|||.||||||||+||..+.
T Consensus 50 ~~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kql 110 (198)
T KOG0483|consen 50 GKGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQL 110 (198)
T ss_pred cccccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhh
Confidence 3455667999999999999999999999999999999999999999999999999998653
No 32
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.77 E-value=9.5e-09 Score=116.53 Aligned_cols=64 Identities=31% Similarity=0.386 Sum_probs=60.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhccc
Q 000285 29 GQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1722)
Q Consensus 29 ~~~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~ 92 (1722)
..++|+.|+.|+..|+..|+++|..+|||+...|+.||..+++++..|||||||||+||++...
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 4577889999999999999999999999999999999999999999999999999999999654
No 33
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=98.75 E-value=6.6e-09 Score=88.70 Aligned_cols=36 Identities=42% Similarity=0.675 Sum_probs=34.8
Q ss_pred EEEEcCHHHHHHHHHhc-CcCCcchHHHHHHHHHHHH
Q 000285 1149 WRLIDTVEAFDALLSSL-DARGTRESHLRIMLQKIET 1184 (1722)
Q Consensus 1149 W~~ydt~eeld~Ll~~L-n~rG~RE~~Lk~~L~~~~~ 1184 (1722)
|+||+++++||+||.|| ||||+||+.|++.|.+.+.
T Consensus 1 W~~~~~~e~ld~L~~aL~~prG~RE~~L~~~L~~~~k 37 (46)
T PF15614_consen 1 WGYYDDPEELDELLKALENPRGKRESKLKKELDKHRK 37 (46)
T ss_pred CccccCHHHHHHHHHHHcCcccHhHHHHHHHHHHHhc
Confidence 99999999999999999 9999999999999999883
No 34
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.58 E-value=1.1e-07 Score=114.94 Aligned_cols=66 Identities=30% Similarity=0.586 Sum_probs=61.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcccC
Q 000285 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKEN 93 (1722)
Q Consensus 28 ~~~~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~~ 93 (1722)
..++.+|.||+|++.|+..|+..|..++||++..|++||..+++++..|+|||+|||+|++|....
T Consensus 172 ~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~~ 237 (354)
T KOG0849|consen 172 LQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHRD 237 (354)
T ss_pred ccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhcccc
Confidence 345667789999999999999999999999999999999999999999999999999999997644
No 35
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.45 E-value=7.2e-08 Score=108.62 Aligned_cols=63 Identities=32% Similarity=0.537 Sum_probs=59.4
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhc
Q 000285 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKE 90 (1722)
Q Consensus 28 ~~~~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~ 90 (1722)
+++.+||+||.+....-..||..|..+|.|+....+.+|.+|.|...+|+|||||.|+|.||.
T Consensus 305 ~~~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm 367 (385)
T KOG1168|consen 305 PGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 367 (385)
T ss_pred CccccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHh
Confidence 445679999999999999999999999999999999999999999999999999999999984
No 36
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=98.44 E-value=1.9e-07 Score=82.08 Aligned_cols=48 Identities=33% Similarity=0.414 Sum_probs=41.1
Q ss_pred hhhHhhcccccccCCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 000285 928 ESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAA 975 (1722)
Q Consensus 928 e~wl~~L~e~eY~dLsveeRL~aL~aL~dllL~t~sIR~~LEerlE~a 975 (1722)
..|+..|..++|++|++++||.||++||+.++++.+||++|++|.|++
T Consensus 3 ~~~~~~l~~~~y~~L~~~~kl~iL~~L~~~~l~s~~vr~~i~~~~e~~ 50 (50)
T PF15612_consen 3 PGLAPPLETGEYYELSPEEKLEILRALCDQLLSSSSVRNEIEEREEEQ 50 (50)
T ss_dssp GGG-CCCCCSTCCCS-HHHHHHHHHHHHHHHCC-CCHHHHHHHHHT--
T ss_pred hhhhHHHHcCCcccCCHHHHHHHHHHHHHHHcCcHHHHHHHHHhhccC
Confidence 358899999999999999999999999999999999999999998853
No 37
>PTZ00121 MAEBL; Provisional
Probab=98.20 E-value=8.3e-05 Score=97.97 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=8.5
Q ss_pred hhhhhhhhccCCc
Q 000285 1330 SIQCEEKTKLGLR 1342 (1722)
Q Consensus 1330 ~~~c~~k~~~~~~ 1342 (1722)
--.|..++=.||.
T Consensus 1993 YynCmk~EF~dp~ 2005 (2084)
T PTZ00121 1993 YYDCMKEEFADKD 2005 (2084)
T ss_pred HHhhHHhhccCcc
Confidence 3467777766665
No 38
>PTZ00121 MAEBL; Provisional
Probab=98.13 E-value=0.00014 Score=95.88 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=5.5
Q ss_pred cchhhhhhhhh
Q 000285 1327 SEHSIQCEEKT 1337 (1722)
Q Consensus 1327 ~~h~~~c~~k~ 1337 (1722)
..+.-.|=.|.
T Consensus 2002 ~dp~Y~CF~K~ 2012 (2084)
T PTZ00121 2002 ADKDYKCFKKK 2012 (2084)
T ss_pred cCcchhhhccc
Confidence 34445565544
No 39
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=98.13 E-value=1.4e-06 Score=82.21 Aligned_cols=68 Identities=37% Similarity=0.517 Sum_probs=56.3
Q ss_pred cchhHHHHHHHhhhcCCCcchhHHHHHHHhhccccCCCCCCchhhHHHhhccccc----chhccCCCcccccCC
Q 000285 717 GTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTK----LFERIAPSTYCVRPA 786 (1722)
Q Consensus 717 gtvk~a~f~vls~~g~~gl~v~ela~~iqk~glrd~~ts~t~ea~i~~als~d~~----Lfer~apsty~~r~~ 786 (1722)
+|++-||++||...| +.|+..||.+.|+..||-+.. +|||++.|+++|.+|++ .|-++.+++|+||.+
T Consensus 1 mt~~eaa~~vL~~~~-~pm~~~eI~~~i~~~~~~~~~-~k~p~~~i~a~ly~~~~~~d~~F~~vg~~~~~L~~w 72 (72)
T PF05066_consen 1 MTFKEAAYEVLEEAG-RPMTFKEIWEEIQERGLYKKS-GKTPEATIAAQLYTDIKNEDSRFVKVGPGRWGLRSW 72 (72)
T ss_dssp S-HHHHHHHHHHHH--S-EEHHHHHHHHHHHHTS----GGGGGHHHH-HHHHHHH-T-SS-EESSSSEEE-GGG
T ss_pred CCHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCCCCcc-cCCHHHHHHHHHHHHcccCCCCEEEeCCCcEEeeeC
Confidence 588999999999999 999999999999999999887 99999999999999998 999999999999854
No 40
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.07 E-value=0.00018 Score=89.47 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=10.3
Q ss_pred HHHHHHhCCCCcceeecc
Q 000285 63 AELSEKLGLSDRQLQMWF 80 (1722)
Q Consensus 63 ~eLA~~LgLserqVqVWF 80 (1722)
+-+...+++...+.-+.|
T Consensus 41 e~~t~~~N~~~d~~~~d~ 58 (811)
T KOG4364|consen 41 ESQTSSLNLEMDGLFDDF 58 (811)
T ss_pred ccchhhhhcccchhHHHH
Confidence 334555666666666666
No 41
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.03 E-value=0.00016 Score=97.15 Aligned_cols=7 Identities=29% Similarity=0.112 Sum_probs=2.9
Q ss_pred HHHHHhC
Q 000285 174 CVEAQLG 180 (1722)
Q Consensus 174 ~ve~qlg 180 (1722)
+.+-..|
T Consensus 233 LYELLTG 239 (1021)
T PTZ00266 233 IYELCSG 239 (1021)
T ss_pred HHHHHHC
Confidence 3344444
No 42
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.02 E-value=1.8e-05 Score=89.89 Aligned_cols=51 Identities=31% Similarity=0.503 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhh
Q 000285 39 KTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1722)
Q Consensus 39 fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr 89 (1722)
|...-+..|...|.+++||+..++.+||+.+||+..||-.||.|||+++|-
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhh
Confidence 444557799999999999999999999999999999999999999999994
No 43
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.00031 Score=88.36 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=6.8
Q ss_pred CcccccccHHHH
Q 000285 338 SDGQTFNNDAEQ 349 (1722)
Q Consensus 338 s~~~~~~~~e~~ 349 (1722)
+...+|+|+.++
T Consensus 309 P~~~TFEDKrke 320 (1118)
T KOG1029|consen 309 PAPVTFEDKRKE 320 (1118)
T ss_pred CCCcchhhhhHH
Confidence 334668775443
No 44
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=97.83 E-value=0.00073 Score=84.35 Aligned_cols=12 Identities=33% Similarity=0.288 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 000285 425 KREMERREKFLQ 436 (1722)
Q Consensus 425 ~reeer~eke~e 436 (1722)
+++++...+.++
T Consensus 320 KdE~Ek~kKqee 331 (811)
T KOG4364|consen 320 KDEQEKLKKQEE 331 (811)
T ss_pred hhHHHHHHHHHH
Confidence 333333333333
No 45
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.78 E-value=5.8e-05 Score=84.92 Aligned_cols=60 Identities=28% Similarity=0.512 Sum_probs=55.3
Q ss_pred CCCCCCcCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcc
Q 000285 32 GKPKRQMKTPFQLETLEKAY---ASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEK 91 (1722)
Q Consensus 32 ~rr~Rt~fT~~Ql~~Le~~F---~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~ 91 (1722)
.+|+|..|+..-..+|...| ..+|||+...+++||.++|++..||..||.|.|-+.||..
T Consensus 188 arRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~ 250 (334)
T KOG0774|consen 188 ARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNM 250 (334)
T ss_pred HHHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhh
Confidence 36788999999999999999 4689999999999999999999999999999999999843
No 46
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.53 E-value=0.0077 Score=68.77 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000285 348 EQRMEKKRKCDEARIAREVE 367 (1722)
Q Consensus 348 ~~r~Ek~rk~eeer~~ke~e 367 (1722)
+.+.+.+++.+.++.+.+.+
T Consensus 276 akraeerrqieterlrqeee 295 (445)
T KOG2891|consen 276 AKRAEERRQIETERLRQEEE 295 (445)
T ss_pred HHHHHHHhhhhHHHHhhhHh
Confidence 44556666666666665544
No 47
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=97.08 E-value=0.076 Score=58.37 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=5.2
Q ss_pred CCCCCCCCC
Q 000285 326 HPIFGTEDP 334 (1722)
Q Consensus 326 ~~~~~~~~P 334 (1722)
.+++|+.||
T Consensus 13 K~saGTtda 21 (171)
T PF05672_consen 13 KPSAGTTDA 21 (171)
T ss_pred CCCCCCCCH
Confidence 455666655
No 48
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.04 E-value=0.00041 Score=78.94 Aligned_cols=65 Identities=35% Similarity=0.571 Sum_probs=60.2
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhccc
Q 000285 28 EGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1722)
Q Consensus 28 ~~~~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~ 92 (1722)
...+.++.|+.++..|+..+...|..++||+...+..|+..+|++.+.|++||||+|++.++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 149 SNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred CccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 34577888999999999999999999999999999999999999999999999999999999544
No 49
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=96.67 E-value=0.00041 Score=58.73 Aligned_cols=34 Identities=35% Similarity=0.756 Sum_probs=28.8
Q ss_pred hcCCCCHHHHHHHHHHhCCCCcceeeccccchhh
Q 000285 53 SETYPSESTRAELSEKLGLSDRQLQMWFCHRRLK 86 (1722)
Q Consensus 53 ~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK 86 (1722)
.+|||+..++..||..+||+..||..||-|.|.+
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 5799999999999999999999999999998853
No 50
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=96.61 E-value=0.0013 Score=81.78 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=53.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhh
Q 000285 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKD 87 (1722)
Q Consensus 30 ~~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~ 87 (1722)
-..||.|.+||..|...|..+|+.+++|+..+.+.|+.+|+|..+.|..||-|-|.+.
T Consensus 418 ~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 418 LQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred ccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 3567789999999999999999999999999999999999999999999999987653
No 51
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=96.41 E-value=0.16 Score=58.54 Aligned_cols=19 Identities=42% Similarity=0.929 Sum_probs=9.7
Q ss_pred HHHhCCCccC--CCCccCCCC
Q 000285 176 EAQLGEPLRE--DGPILGMEF 194 (1722)
Q Consensus 176 e~qlge~~re--dgP~lg~ef 194 (1722)
.-.+|-|||+ .|-|.|+.|
T Consensus 192 dipicdplr~~mn~kisgiq~ 212 (445)
T KOG2891|consen 192 DIPICDPLREEMNGKISGIQF 212 (445)
T ss_pred CCcccchhHHHhcCcccccee
Confidence 3344555554 455555555
No 52
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.11 Score=66.88 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=5.5
Q ss_pred cceeeccCCCCc
Q 000285 1459 DASIMYVKPEKP 1470 (1722)
Q Consensus 1459 Da~I~y~~~~~~ 1470 (1722)
|+-..|...-|.
T Consensus 911 D~f~~y~e~~ke 922 (1064)
T KOG1144|consen 911 DAFTKYIEEIKE 922 (1064)
T ss_pred HHHHHHHHHHHH
Confidence 444455544443
No 53
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=95.70 E-value=0.4 Score=60.84 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=27.5
Q ss_pred CCCchhHHHHHHHHHHHHHhCCCccCC--CCc----cCCCCCCCCCCCCCCCC
Q 000285 160 YESQQSIMELRAIACVEAQLGEPLRED--GPI----LGMEFDSLPPDAFGAPI 206 (1722)
Q Consensus 160 y~P~~~~~e~~ai~~ve~qlge~~red--gP~----lg~efdplPP~~f~~pi 206 (1722)
-.|...+.....|.-|=.-||+.+..+ +++ +-.-+||--...|+.-|
T Consensus 17 ~gp~~~~~t~~~i~~iG~~la~~~~~~~~~~~~~y~ii~~vd~~~~~~~~ADi 69 (489)
T PF05262_consen 17 SGPHASIETAQQIRGIGSGLAEALKNGRAGSYGRYYIIHAVDPEEKKKLDADI 69 (489)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHhcCCCCccCcEEEEEecCcccccCCCCcE
Confidence 345555666688888888888887653 222 11234444455566555
No 54
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.21 Score=64.43 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=10.0
Q ss_pred hhhccCCCHHHHHHHHHHHHhhhh
Q 000285 1388 MKLNMSSSAEEVLQLLTILESGIK 1411 (1722)
Q Consensus 1388 ~~l~~ass~~el~q~l~~le~~ik 1411 (1722)
+++-.|..++-|+-+.+.+..-||
T Consensus 898 VkIF~adiIYhLfD~f~~y~e~~k 921 (1064)
T KOG1144|consen 898 VKIFCADIIYHLFDAFTKYIEEIK 921 (1064)
T ss_pred ceeeehhHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 55
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=95.37 E-value=0.02 Score=77.28 Aligned_cols=62 Identities=29% Similarity=0.511 Sum_probs=57.8
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhccc
Q 000285 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1722)
Q Consensus 31 ~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~ 92 (1722)
.+++.||.++..||.++...|....||.....+-|...+++..+.|+|||||-|+|.++...
T Consensus 902 ~r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 902 GRRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 45778999999999999999999999999999999999999999999999999999999443
No 56
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.18 E-value=0.48 Score=60.88 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=14.0
Q ss_pred cccCCCCHHHHHHHhcc-CchhHH
Q 000285 561 LGLWPFTLDEFVQAFHD-HESRLL 583 (1722)
Q Consensus 561 L~LspfTLddf~~AL~~-~ds~LL 583 (1722)
..|+...+.+|-.+|.. -|=+||
T Consensus 1065 YDl~~wkyaeLRDtINTS~DieLL 1088 (1259)
T KOG0163|consen 1065 YDLSKWKYAELRDTINTSCDIELL 1088 (1259)
T ss_pred cccccccHHHHHHhhcccccHHHH
Confidence 35566677777777774 333454
No 57
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=95.00 E-value=1 Score=57.22 Aligned_cols=7 Identities=43% Similarity=0.278 Sum_probs=3.2
Q ss_pred CCCCHHH
Q 000285 564 WPFTLDE 570 (1722)
Q Consensus 564 spfTLdd 570 (1722)
.|.||+-
T Consensus 426 d~~tLev 432 (489)
T PF05262_consen 426 DPETLEV 432 (489)
T ss_pred Cccccee
Confidence 4555443
No 58
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.95 E-value=0.96 Score=58.34 Aligned_cols=18 Identities=39% Similarity=0.711 Sum_probs=7.4
Q ss_pred HHHhCCCCcceeeccccc
Q 000285 66 SEKLGLSDRQLQMWFCHR 83 (1722)
Q Consensus 66 A~~LgLserqVqVWFQNR 83 (1722)
|..|||....+++=.|-|
T Consensus 377 a~LLGld~~elr~~L~aR 394 (1259)
T KOG0163|consen 377 AELLGLDQTELRTGLCAR 394 (1259)
T ss_pred HHHhCCCHHHHHHHHHHH
Confidence 333444444444444433
No 59
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=94.82 E-value=0.36 Score=60.12 Aligned_cols=6 Identities=33% Similarity=0.617 Sum_probs=2.6
Q ss_pred CCCCCC
Q 000285 198 PPDAFG 203 (1722)
Q Consensus 198 PP~~f~ 203 (1722)
||++-.
T Consensus 366 pPapke 371 (940)
T KOG4661|consen 366 PPAPKE 371 (940)
T ss_pred CCCCcc
Confidence 444433
No 60
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=94.81 E-value=3.2 Score=54.72 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=10.7
Q ss_pred CccCCCCccCCCCCCCC
Q 000285 182 PLREDGPILGMEFDSLP 198 (1722)
Q Consensus 182 ~~redgP~lg~efdplP 198 (1722)
.+++==-||-++|+||-
T Consensus 388 e~kdLY~iLEveF~PL~ 404 (988)
T KOG2072|consen 388 EVKDLYNILEVEFHPLK 404 (988)
T ss_pred HHHHHHHHHHhcCCHHH
Confidence 33444457788888874
No 61
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=9.5 Score=47.36 Aligned_cols=9 Identities=44% Similarity=0.427 Sum_probs=4.2
Q ss_pred CccchhHHH
Q 000285 715 TPGTVKFAA 723 (1722)
Q Consensus 715 ~pgtvk~a~ 723 (1722)
.|||=|..+
T Consensus 392 PPGTGKTm~ 400 (630)
T KOG0742|consen 392 PPGTGKTMF 400 (630)
T ss_pred CCCCCchHH
Confidence 355555443
No 62
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=93.14 E-value=1.6 Score=55.08 Aligned_cols=15 Identities=33% Similarity=0.264 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhC
Q 000285 166 IMELRAIACVEAQLG 180 (1722)
Q Consensus 166 ~~e~~ai~~ve~qlg 180 (1722)
+.-.++|+.|+.-||
T Consensus 27 pdl~a~~as~~~~l~ 41 (591)
T KOG2412|consen 27 PDLVAEIASVEKKLN 41 (591)
T ss_pred hhHHHHhhhhhhhhc
Confidence 344577888887777
No 63
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=91.80 E-value=2 Score=54.44 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=11.7
Q ss_pred cCCCCHHHHHHHHHHHhCC
Q 000285 644 LNPLTWHEIFRQLALSAGF 662 (1722)
Q Consensus 644 Ln~lTWpEiLR~~l~a~G~ 662 (1722)
++..|---||=.||-++||
T Consensus 517 p~~~~tatll~s~Lq~aG~ 535 (591)
T KOG2412|consen 517 PLLDTTATLLNSFLQTAGF 535 (591)
T ss_pred CccchHHHHHHHHHHHHHH
Confidence 3334666677777777764
No 64
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.96 E-value=1.5 Score=50.29 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=14.9
Q ss_pred hHhhhhhccccC-CCCHHHHHHHhccC
Q 000285 553 FFITFADVLGLW-PFTLDEFVQAFHDH 578 (1722)
Q Consensus 553 FL~sF~~~L~Ls-pfTLddf~~AL~~~ 578 (1722)
||.-|-+.+.-. ...|+||..++...
T Consensus 201 ll~eFv~YIk~nKvV~ledLas~f~Lr 227 (299)
T KOG3054|consen 201 LLSEFVEYIKKNKVVPLEDLASEFGLR 227 (299)
T ss_pred HHHHHHHHHHhcCeeeHHHHHHHhCcc
Confidence 444454444443 34677887777753
No 65
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=90.79 E-value=24 Score=42.44 Aligned_cols=14 Identities=29% Similarity=0.176 Sum_probs=6.5
Q ss_pred CCCCHHHHHHHHHH
Q 000285 645 NPLTWHEIFRQLAL 658 (1722)
Q Consensus 645 n~lTWpEiLR~~l~ 658 (1722)
..+.=+.-||+-.+
T Consensus 344 ~~~~Gd~~lCqAal 357 (387)
T COG3064 344 KPEGGDPALCQAAL 357 (387)
T ss_pred cccCCChHHHHHHH
Confidence 33333444555555
No 66
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=90.78 E-value=22 Score=42.34 Aligned_cols=13 Identities=8% Similarity=0.064 Sum_probs=5.4
Q ss_pred ccCCCcccccChh
Q 000285 494 SKGLSSIIHLDLE 506 (1722)
Q Consensus 494 sk~l~ssi~~D~E 506 (1722)
.+|.|......++
T Consensus 235 ~kpkpvp~~~G~~ 247 (264)
T PF13904_consen 235 NKPKPVPLNQGYD 247 (264)
T ss_pred cCCCCCCcCCCCC
Confidence 3444444443333
No 67
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.67 E-value=1.9 Score=49.54 Aligned_cols=7 Identities=43% Similarity=0.767 Sum_probs=3.2
Q ss_pred chhHHHH
Q 000285 736 TVLELAD 742 (1722)
Q Consensus 736 ~v~ela~ 742 (1722)
+|.|||.
T Consensus 276 SIaelAe 282 (299)
T KOG3054|consen 276 SIAELAE 282 (299)
T ss_pred eHHHHHH
Confidence 3444444
No 68
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=89.44 E-value=1.5 Score=57.10 Aligned_cols=10 Identities=50% Similarity=0.773 Sum_probs=6.9
Q ss_pred hhhcccchhh
Q 000285 630 AYAWGFDIRN 639 (1722)
Q Consensus 630 a~~wg~~~~~ 639 (1722)
|.++||+|+.
T Consensus 838 a~afgF~is~ 847 (1102)
T KOG1924|consen 838 AQAFGFNISF 847 (1102)
T ss_pred chhhccchHH
Confidence 3467888874
No 69
>PRK00106 hypothetical protein; Provisional
Probab=88.10 E-value=50 Score=43.26 Aligned_cols=6 Identities=33% Similarity=0.374 Sum_probs=2.2
Q ss_pred HHHHHH
Q 000285 951 LVALIG 956 (1722)
Q Consensus 951 L~aL~d 956 (1722)
|++++|
T Consensus 434 IV~~AD 439 (535)
T PRK00106 434 IVAAAD 439 (535)
T ss_pred HHHHHH
Confidence 333333
No 70
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=87.81 E-value=3 Score=54.17 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=45.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhccc
Q 000285 44 LETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1722)
Q Consensus 44 l~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~~ 92 (1722)
+..|...|..|.+|+..+-..+|.+.||+.+.|+.||++++++.....+
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv~r 616 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSVER 616 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhhcc
Confidence 7789999999999999999999999999999999999999999887553
No 71
>PRK12704 phosphodiesterase; Provisional
Probab=86.01 E-value=1.1e+02 Score=39.98 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=9.7
Q ss_pred ccCCCCHHHHHHHhc
Q 000285 562 GLWPFTLDEFVQAFH 576 (1722)
Q Consensus 562 ~LspfTLddf~~AL~ 576 (1722)
.+.||..++++....
T Consensus 278 ~i~P~~iee~~~~~~ 292 (520)
T PRK12704 278 RIHPARIEEMVEKAR 292 (520)
T ss_pred CcCCCCHHHHHHHHH
Confidence 456777777766554
No 72
>PRK12704 phosphodiesterase; Provisional
Probab=84.54 E-value=72 Score=41.79 Aligned_cols=12 Identities=25% Similarity=0.119 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHh
Q 000285 948 LNALVALIGIAN 959 (1722)
Q Consensus 948 L~aL~aL~dllL 959 (1722)
+-.++.++|.+.
T Consensus 416 ~a~IV~~ADaLs 427 (520)
T PRK12704 416 EAVLVAAADAIS 427 (520)
T ss_pred HHHHHHHHHHHh
Confidence 344555555433
No 73
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=83.24 E-value=12 Score=50.81 Aligned_cols=7 Identities=14% Similarity=0.206 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 000285 170 RAIACVE 176 (1722)
Q Consensus 170 ~ai~~ve 176 (1722)
.||.+-.
T Consensus 630 KAlq~y~ 636 (1018)
T KOG2002|consen 630 KALQLYG 636 (1018)
T ss_pred HHHHHHH
Confidence 3444433
No 74
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=82.21 E-value=1.1e+02 Score=41.31 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=9.5
Q ss_pred CCCCCCCcCCHHHH
Q 000285 31 QGKPKRQMKTPFQL 44 (1722)
Q Consensus 31 ~~rr~Rt~fT~~Ql 44 (1722)
+-+-.|+.+|++-.
T Consensus 140 qdR~DR~lltPWlk 153 (988)
T KOG2072|consen 140 QDRSDRELLTPWLK 153 (988)
T ss_pred ccccchHHHHHHHH
Confidence 44667888888643
No 75
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=82.19 E-value=0.48 Score=43.27 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccch
Q 000285 44 LETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRR 84 (1722)
Q Consensus 44 l~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRR 84 (1722)
+..|+..|...+++.......|..+.+|+..||+.||-.|+
T Consensus 10 ~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 10 IQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp -HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 45699999999999999999999999999999999996554
No 76
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=81.41 E-value=1.7 Score=50.32 Aligned_cols=9 Identities=33% Similarity=0.785 Sum_probs=3.6
Q ss_pred cCCCCCccc
Q 000285 1306 EDAHCPSCH 1314 (1722)
Q Consensus 1306 ~e~hC~~CH 1314 (1722)
++..|..|+
T Consensus 50 nRAFCYFC~ 58 (314)
T PF06524_consen 50 NRAFCYFCQ 58 (314)
T ss_pred ccceeehhh
Confidence 333444443
No 77
>PRK00106 hypothetical protein; Provisional
Probab=81.41 E-value=1.9e+02 Score=38.10 Aligned_cols=6 Identities=0% Similarity=0.147 Sum_probs=2.3
Q ss_pred hhhccC
Q 000285 640 WQQLLN 645 (1722)
Q Consensus 640 ~~~~Ln 645 (1722)
|..+++
T Consensus 352 ~~HSv~ 357 (535)
T PRK00106 352 LRHSVE 357 (535)
T ss_pred HHHHHH
Confidence 333333
No 78
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=78.31 E-value=1.5 Score=54.47 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=8.7
Q ss_pred cCCCccCCCCCCCCC
Q 000285 1695 EGNIDMSEASDQNGI 1709 (1722)
Q Consensus 1695 ~~d~~~~~~~~~~~~ 1709 (1722)
++..+.++.+|||--
T Consensus 89 ~~~~~~~~~ddG~~T 103 (458)
T PF10446_consen 89 STVHDFDSDDDGNET 103 (458)
T ss_pred cccccccccccCccC
Confidence 333456667888444
No 79
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=78.28 E-value=2.1e+02 Score=36.74 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=20.1
Q ss_pred hhhcccchhhhhhccCCCCHHHHHHHHHHHhCCCCcc
Q 000285 630 AYAWGFDIRNWQQLLNPLTWHEIFRQLALSAGFGPKL 666 (1722)
Q Consensus 630 a~~wg~~~~~~~~~Ln~lTWpEiLR~~l~a~G~g~~~ 666 (1722)
+|.-||-++ ..-+.+|=+|.+|-. +|.||..
T Consensus 621 frds~cqfr---alyT~~~ETeei~kl---~gmgpk~ 651 (708)
T KOG3654|consen 621 FRDSGCQFR---ALYTYMPETEEIRKL---TGMGPKM 651 (708)
T ss_pred hhhccceee---cccccCccHHHHhhh---hccCchh
Confidence 334477665 456778888888865 4667763
No 80
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.66 E-value=1.1e+02 Score=36.24 Aligned_cols=10 Identities=30% Similarity=0.524 Sum_probs=6.0
Q ss_pred HHHHHHhchh
Q 000285 590 LLKSIIKDIE 599 (1722)
Q Consensus 590 LLk~ll~d~E 599 (1722)
=|+.|-.+++
T Consensus 190 QL~~L~~EL~ 199 (246)
T PF00769_consen 190 QLKELKSELE 199 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3566666666
No 81
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=76.62 E-value=1.9 Score=52.79 Aligned_cols=58 Identities=22% Similarity=0.337 Sum_probs=46.5
Q ss_pred CCCCCCcCCHHHHHHHHHH-Hh--hcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhh
Q 000285 32 GKPKRQMKTPFQLETLEKA-YA--SETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 (1722)
Q Consensus 32 ~rr~Rt~fT~~Ql~~Le~~-F~--~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr 89 (1722)
+.|++..+......+|+.- |. ..|||+...+..||.++||+..||..||-|.|-+..+
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~ 299 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWK 299 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCC
Confidence 3445557888777777754 22 2589999999999999999999999999999877555
No 82
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=76.56 E-value=26 Score=43.72 Aligned_cols=9 Identities=33% Similarity=0.386 Sum_probs=5.3
Q ss_pred hhhhHHhHh
Q 000285 547 LLMVWRFFI 555 (1722)
Q Consensus 547 LLmVw~FL~ 555 (1722)
|-||-+|.+
T Consensus 337 L~~vr~yvr 345 (506)
T KOG2507|consen 337 LRMVRDYVR 345 (506)
T ss_pred HHHHHHHHH
Confidence 455666665
No 83
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=76.44 E-value=8.7 Score=46.92 Aligned_cols=6 Identities=33% Similarity=0.988 Sum_probs=2.6
Q ss_pred eeeccc
Q 000285 76 LQMWFC 81 (1722)
Q Consensus 76 VqVWFQ 81 (1722)
+.-||.
T Consensus 32 A~~w~~ 37 (321)
T PF07946_consen 32 AKAWFE 37 (321)
T ss_pred HHHHHH
Confidence 344543
No 84
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.24 E-value=2.8e+02 Score=37.05 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=11.8
Q ss_pred HHHHHHHHhCCCccCCC
Q 000285 171 AIACVEAQLGEPLREDG 187 (1722)
Q Consensus 171 ai~~ve~qlge~~redg 187 (1722)
+..+|.+.+|.|.+.-.
T Consensus 622 ~A~~~~~~~~~~~QdaS 638 (1187)
T KOG0579|consen 622 EAEAVNALFKKPSQDAS 638 (1187)
T ss_pred HHHHHHHhhcCchhhhh
Confidence 55667888888865533
No 85
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=74.58 E-value=1.9e+02 Score=34.35 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=3.5
Q ss_pred cchhhcccch
Q 000285 682 IVSTIRNGSA 691 (1722)
Q Consensus 682 ~~~~~~~g~~ 691 (1722)
-+..||.|++
T Consensus 227 tl~~i~~g~t 236 (246)
T PF00769_consen 227 TLRQIRQGNT 236 (246)
T ss_dssp HHHHHT-S-H
T ss_pred HHHHHhcCCH
Confidence 3334445543
No 86
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=74.13 E-value=13 Score=48.97 Aligned_cols=20 Identities=25% Similarity=0.047 Sum_probs=9.2
Q ss_pred CCccCCCCCCCCCCCCCCCC
Q 000285 187 GPILGMEFDSLPPDAFGAPI 206 (1722)
Q Consensus 187 gP~lg~efdplPP~~f~~pi 206 (1722)
+|+.|+-.-|.||.+.|+|=
T Consensus 574 ppppg~~gppPPPpp~g~~G 593 (1102)
T KOG1924|consen 574 PPPPGGGGPPPPPPPGGFLG 593 (1102)
T ss_pred CCCCCCCCCCCcCCCCCCCC
Confidence 44455444444444444443
No 87
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.88 E-value=2.4 Score=55.86 Aligned_cols=26 Identities=31% Similarity=0.236 Sum_probs=10.2
Q ss_pred HhhcccccccCCCHHHHHHHHHHHHH
Q 000285 931 IQGLAEGDYSHLSVEERLNALVALIG 956 (1722)
Q Consensus 931 l~~L~e~eY~dLsveeRL~aL~aL~d 956 (1722)
+.....|.|+-.+++.+.-+|.+|++
T Consensus 663 iL~~a~g~~~i~Dpei~~~AL~vIin 688 (1516)
T KOG1832|consen 663 ILDAANGSNSIVDPEIIQPALNVIIN 688 (1516)
T ss_pred EeecccccccccCHHHHHHHHhhhhe
Confidence 33333334433344444444443333
No 88
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.53 E-value=35 Score=40.62 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 000285 461 KVAIEKATARKMAK 474 (1722)
Q Consensus 461 k~eeEr~~~~~~ak 474 (1722)
+++.++.++++.++
T Consensus 163 ~~~Ie~DKaeRka~ 176 (290)
T KOG2689|consen 163 LRQIERDKAERKAK 176 (290)
T ss_pred HHHHHHhHHHHHHH
Confidence 33334444444433
No 89
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=73.05 E-value=3.2 Score=55.86 Aligned_cols=12 Identities=17% Similarity=0.122 Sum_probs=7.1
Q ss_pred HHHHHHHHhCCC
Q 000285 171 AIACVEAQLGEP 182 (1722)
Q Consensus 171 ai~~ve~qlge~ 182 (1722)
+..+|...|-+.
T Consensus 219 VNeAVNNLLSRD 230 (3015)
T KOG0943|consen 219 VNEAVNNLLSRD 230 (3015)
T ss_pred HHHHHHhhhccc
Confidence 455677766543
No 90
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=71.18 E-value=1.3e+02 Score=36.22 Aligned_cols=29 Identities=34% Similarity=0.328 Sum_probs=14.1
Q ss_pred HHhCCCccCCCCccCCCCCCCCCCCCCCCC
Q 000285 177 AQLGEPLREDGPILGMEFDSLPPDAFGAPI 206 (1722)
Q Consensus 177 ~qlge~~redgP~lg~efdplPP~~f~~pi 206 (1722)
++|+--.+..+|+.++ |-++.++.+-.++
T Consensus 16 a~~~~~~~~~~p~~~~-~~~~~~~~~~~~~ 44 (269)
T KOG3119|consen 16 AQLGQRARPLPPVFGP-ERELDLDAGLEAL 44 (269)
T ss_pred ccccccccCCCCCCcc-cccccccccchhc
Confidence 3444444555555554 4444444444444
No 91
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=70.23 E-value=1.4 Score=49.66 Aligned_cols=31 Identities=10% Similarity=0.274 Sum_probs=16.7
Q ss_pred hHhhhhhccccCC-CCHHHHHHHhccCchhHH
Q 000285 553 FFITFADVLGLWP-FTLDEFVQAFHDHESRLL 583 (1722)
Q Consensus 553 FL~sF~~~L~Lsp-fTLddf~~AL~~~ds~LL 583 (1722)
||..|-..+...- ..|+||...+.-.....+
T Consensus 100 lL~~Fi~yIK~~Kvv~ledla~~f~l~t~~~i 131 (188)
T PF09756_consen 100 LLQEFINYIKEHKVVNLEDLAAEFGLRTQDVI 131 (188)
T ss_dssp HHHHHHHHHHH-SEE-HHHHHHHH-S-HHHHH
T ss_pred HHHHHHHHHHHcceeeHHHHHHHcCCCHHHHH
Confidence 4555555565554 468888888876554333
No 92
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=69.94 E-value=3.6 Score=55.99 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=3.1
Q ss_pred CCceeec
Q 000285 1120 RNRYWQF 1126 (1722)
Q Consensus 1120 ~nRYW~F 1126 (1722)
||.||.|
T Consensus 302 ~R~a~~~ 308 (784)
T PF04931_consen 302 HRKALQF 308 (784)
T ss_pred HHHHHHH
Confidence 3334544
No 93
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=69.80 E-value=23 Score=44.77 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q 000285 582 LLGEIHLALLKSI 594 (1722)
Q Consensus 582 LL~EiH~aLLk~l 594 (1722)
-|.++|..||-+|
T Consensus 509 tl~sv~~~~lcai 521 (708)
T KOG3654|consen 509 TLESVHSGLLCAI 521 (708)
T ss_pred ChHhhhhhhhccc
Confidence 5667777776555
No 94
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=69.28 E-value=69 Score=45.38 Aligned_cols=7 Identities=43% Similarity=0.961 Sum_probs=4.1
Q ss_pred eccccch
Q 000285 78 MWFCHRR 84 (1722)
Q Consensus 78 VWFQNRR 84 (1722)
-||+-=|
T Consensus 1739 ~wFgTvR 1745 (2220)
T KOG3598|consen 1739 KWFGTVR 1745 (2220)
T ss_pred eeeeeee
Confidence 4776544
No 95
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.48 E-value=1.6e+02 Score=40.25 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=25.7
Q ss_pred cchHHHHHHHHHHHHHHhcCChhHHhhhhchhHHHHHHhhhccCCCHHHH
Q 000285 1350 SLPLGIRLLKPLSAVIEAYIPPEALEASWTDERRKTWGMKLNMSSSAEEV 1399 (1722)
Q Consensus 1350 ~lp~~l~~LK~~l~~iEa~~p~eAl~~~W~~~~rk~W~~~l~~ass~~el 1399 (1722)
.||--|.+|=+-+++|.= .++|++.=+...-|+|...+-++=+++++
T Consensus 807 ILPeslKLlPly~la~lK---s~~l~~~~~~~DdRi~~~~~v~sl~v~~~ 853 (1007)
T KOG1984|consen 807 ILPESLKLLPLYMLALLK---SSALRPQEIRTDDRIYQLQLVTSLSVEQL 853 (1007)
T ss_pred echhhhHHHHHHHHHHHH---hhcccccccccchhHHHHHHhhcccHHhh
Confidence 567777777777777654 35666422223334444444444445544
No 96
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=66.36 E-value=2.1e+02 Score=41.16 Aligned_cols=6 Identities=17% Similarity=0.346 Sum_probs=2.3
Q ss_pred CCCCCC
Q 000285 253 GSPIDG 258 (1722)
Q Consensus 253 ~~p~~~ 258 (1722)
.||+.+
T Consensus 2008 ~mp~~q 2013 (2220)
T KOG3598|consen 2008 PMPMGQ 2013 (2220)
T ss_pred CCCccc
Confidence 344433
No 97
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=65.56 E-value=2.8e+02 Score=35.43 Aligned_cols=9 Identities=44% Similarity=0.936 Sum_probs=4.7
Q ss_pred hhccCCCCH
Q 000285 641 QQLLNPLTW 649 (1722)
Q Consensus 641 ~~~Ln~lTW 649 (1722)
-..+|+..|
T Consensus 409 G~pvnP~pW 417 (420)
T COG4942 409 GQPVNPQPW 417 (420)
T ss_pred CCcCCchhh
Confidence 345555555
No 98
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=64.27 E-value=1.6e+02 Score=36.76 Aligned_cols=8 Identities=38% Similarity=0.750 Sum_probs=3.3
Q ss_pred CHHHHHHH
Q 000285 567 TLDEFVQA 574 (1722)
Q Consensus 567 TLddf~~A 574 (1722)
+|++|-.-
T Consensus 417 ~leefkrr 424 (442)
T PF06637_consen 417 SLEEFKRR 424 (442)
T ss_pred HHHHHHHH
Confidence 34444333
No 99
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=63.94 E-value=2.3 Score=55.10 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=2.6
Q ss_pred ccCCCCcchH
Q 000285 1439 PILPWIPKTT 1448 (1722)
Q Consensus 1439 ~~~~~~p~T~ 1448 (1722)
..|.|++.+-
T Consensus 457 itlSWk~~~~ 466 (556)
T PF05918_consen 457 ITLSWKEAKK 466 (556)
T ss_dssp ---TTS----
T ss_pred cceeeeeccc
Confidence 5688888877
No 100
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=63.24 E-value=5.4e+02 Score=35.20 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=6.5
Q ss_pred HHHHHHHhCCCC
Q 000285 62 RAELSEKLGLSD 73 (1722)
Q Consensus 62 R~eLA~~LgLse 73 (1722)
|-.-|..+|.+.
T Consensus 152 ~~~~ah~igypv 163 (697)
T PF09726_consen 152 RPFAAHCIGYPV 163 (697)
T ss_pred ccHHHhhcCCce
Confidence 333466667554
No 101
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=62.07 E-value=32 Score=44.38 Aligned_cols=9 Identities=22% Similarity=0.648 Sum_probs=4.3
Q ss_pred HHHHHHHhc
Q 000285 568 LDEFVQAFH 576 (1722)
Q Consensus 568 Lddf~~AL~ 576 (1722)
|+.+..||.
T Consensus 390 leqyt~a~~ 398 (492)
T PF02029_consen 390 LEQYTSAIE 398 (492)
T ss_pred HHHHHHHhh
Confidence 444445544
No 102
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=61.26 E-value=7.5 Score=35.15 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=35.3
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccc
Q 000285 33 KPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHR 83 (1722)
Q Consensus 33 rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNR 83 (1722)
|++|..+|-.+-..+-..++..+ ....||..+|++..+|..|..|+
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 56899999999888888887776 57889999999999999998775
No 103
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=61.06 E-value=59 Score=42.11 Aligned_cols=7 Identities=29% Similarity=0.748 Sum_probs=3.7
Q ss_pred chhhhhh
Q 000285 83 RRLKDKK 89 (1722)
Q Consensus 83 RRaK~Kr 89 (1722)
||++..+
T Consensus 13 RRARqeR 19 (492)
T PF02029_consen 13 RRARQER 19 (492)
T ss_pred HHHHHHH
Confidence 4555555
No 104
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=60.36 E-value=4.7e+02 Score=33.50 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=12.8
Q ss_pred HHHHHhhhcCCCcchhHHHHHH-Hhhccc
Q 000285 723 AFHVLSLEGSKGLTVLELADKI-QKSGLR 750 (1722)
Q Consensus 723 ~f~vls~~g~~gl~v~ela~~i-qk~glr 750 (1722)
.|.-.-.-|+.|..-.=.|+.| ++|||-
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlD 411 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLD 411 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCc
Confidence 3444444555555444444433 245553
No 105
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.65 E-value=6e+02 Score=34.22 Aligned_cols=27 Identities=33% Similarity=0.308 Sum_probs=14.6
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHhchh
Q 000285 572 VQAFHDHESRLLGEIHLALLKSIIKDIE 599 (1722)
Q Consensus 572 ~~AL~~~ds~LL~EiH~aLLk~ll~d~E 599 (1722)
+.||..-+-.-|.|-|. |++-+++|.-
T Consensus 970 EaaiWElEe~qlqEkhq-L~kqqlKDqY 996 (1187)
T KOG0579|consen 970 EAAIWELEEKQLQEKHQ-LHKQQLKDQY 996 (1187)
T ss_pred HHHHhHhHHHHHHHHHH-HHHHHHHHHH
Confidence 34444333345666664 6666777644
No 106
>PLN03086 PRLI-interacting factor K; Provisional
Probab=58.45 E-value=46 Score=43.71 Aligned_cols=11 Identities=36% Similarity=0.598 Sum_probs=6.3
Q ss_pred cccchhhhhhh
Q 000285 1325 KFSEHSIQCEE 1335 (1722)
Q Consensus 1325 ~~~~h~~~c~~ 1335 (1722)
.+..|..+|-.
T Consensus 529 ~Lt~HE~~CG~ 539 (567)
T PLN03086 529 GMSEHESICGS 539 (567)
T ss_pred hHHHHHHhcCC
Confidence 44467666643
No 107
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=57.66 E-value=9.1 Score=52.50 Aligned_cols=7 Identities=0% Similarity=0.211 Sum_probs=2.9
Q ss_pred cccccCc
Q 000285 1591 FQGQMGH 1597 (1722)
Q Consensus 1591 ~~g~~~~ 1597 (1722)
+|-.|++
T Consensus 254 ~vrel~f 260 (840)
T PF04147_consen 254 LVRELAF 260 (840)
T ss_pred HHHHhcc
Confidence 4444443
No 108
>PTZ00491 major vault protein; Provisional
Probab=57.64 E-value=2.4e+02 Score=38.84 Aligned_cols=8 Identities=38% Similarity=0.410 Sum_probs=3.6
Q ss_pred HHHHHhCC
Q 000285 174 CVEAQLGE 181 (1722)
Q Consensus 174 ~ve~qlge 181 (1722)
.||..|..
T Consensus 420 ~ve~lL~~ 427 (850)
T PTZ00491 420 NVEELLAQ 427 (850)
T ss_pred HHHHHHhc
Confidence 34444443
No 109
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=53.92 E-value=7.9 Score=49.19 Aligned_cols=7 Identities=43% Similarity=1.056 Sum_probs=4.4
Q ss_pred hhccccc
Q 000285 1614 EEWGVGK 1620 (1722)
Q Consensus 1614 e~w~~~~ 1620 (1722)
-||.+.|
T Consensus 190 VDWAV~K 196 (678)
T KOG0127|consen 190 VDWAVDK 196 (678)
T ss_pred Eeeeccc
Confidence 4577665
No 110
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=53.13 E-value=4e+02 Score=30.52 Aligned_cols=10 Identities=50% Similarity=0.670 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 000285 443 EKRRLKEELR 452 (1722)
Q Consensus 443 Ek~r~kEe~r 452 (1722)
|+++.+++++
T Consensus 202 ekK~~KeaKr 211 (225)
T KOG4848|consen 202 EKKAVKEAKR 211 (225)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 111
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=52.41 E-value=3.2e+02 Score=37.74 Aligned_cols=14 Identities=21% Similarity=0.029 Sum_probs=6.3
Q ss_pred hhhccccCCCCHHH
Q 000285 557 FADVLGLWPFTLDE 570 (1722)
Q Consensus 557 F~~~L~LspfTLdd 570 (1722)
+...|.|-.++.++
T Consensus 692 ~~~~ldl~G~~~~e 705 (771)
T TIGR01069 692 ASLTLDLRGQRSEE 705 (771)
T ss_pred CCceEECCCCCHHH
Confidence 33444444444443
No 112
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=51.18 E-value=4.9 Score=30.98 Aligned_cols=23 Identities=30% Similarity=0.875 Sum_probs=18.6
Q ss_pred CCCCccccccccCCCcccccchhhhhh
Q 000285 1308 AHCPSCHRTFGAVDKSSKFSEHSIQCE 1334 (1722)
Q Consensus 1308 ~hC~~CH~tf~~~d~e~~~~~h~~~c~ 1334 (1722)
..|++|.++|.. ..+.+|...|+
T Consensus 3 ~~C~~CgR~F~~----~~l~~H~~~C~ 25 (25)
T PF13913_consen 3 VPCPICGRKFNP----DRLEKHEKICK 25 (25)
T ss_pred CcCCCCCCEECH----HHHHHHHHhcC
Confidence 469999999975 47779988884
No 113
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=51.11 E-value=10 Score=51.65 Aligned_cols=6 Identities=50% Similarity=0.689 Sum_probs=2.5
Q ss_pred eeeccC
Q 000285 1461 SIMYVK 1466 (1722)
Q Consensus 1461 ~I~y~~ 1466 (1722)
.++|.+
T Consensus 560 ~~c~~~ 565 (784)
T PF04931_consen 560 QICYEK 565 (784)
T ss_pred HHHHHH
Confidence 334443
No 114
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.37 E-value=6.6e+02 Score=32.18 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=23.6
Q ss_pred hhhhHHhHhhhhhcc--ccCCCCHHHHHHHhccCch
Q 000285 547 LLMVWRFFITFADVL--GLWPFTLDEFVQAFHDHES 580 (1722)
Q Consensus 547 LLmVw~FL~sF~~~L--~LspfTLddf~~AL~~~ds 580 (1722)
+|.-|.|+.+|..-| .++.++=++|.+||.....
T Consensus 440 ~lkn~ha~~~~~~Slaaeid~~sqdeLmqafqeqee 475 (502)
T KOG0982|consen 440 FLKNWHATFSLFFSLAAEIDEMSQDELMQAFQEQEE 475 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455677776666555 3456788999999997443
No 115
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=50.36 E-value=4.8e+02 Score=32.35 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=5.8
Q ss_pred CccCCCCCCCCCC
Q 000285 188 PILGMEFDSLPPD 200 (1722)
Q Consensus 188 P~lg~efdplPP~ 200 (1722)
-|.|..--|+||+
T Consensus 249 Q~~Gqppppmpp~ 261 (498)
T KOG4849|consen 249 QINGQPPPPMPPA 261 (498)
T ss_pred CcCCCCCCCCCCC
Confidence 3444444444443
No 116
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=50.08 E-value=2e+02 Score=39.60 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=10.3
Q ss_pred hhhhccccCCCCHHHHH
Q 000285 556 TFADVLGLWPFTLDEFV 572 (1722)
Q Consensus 556 sF~~~L~LspfTLddf~ 572 (1722)
.+...|.|-.++.++-.
T Consensus 702 ~~~~~lDL~G~~~eeA~ 718 (782)
T PRK00409 702 TVSLELDLRGMRYEEAL 718 (782)
T ss_pred CCCceEECCCCCHHHHH
Confidence 45556677777765543
No 117
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.73 E-value=11 Score=46.41 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=20.4
Q ss_pred HHHHHHHHhhh-hHHHH-HHhhhccccchhhhhccccccccccc-ccc
Q 000285 1253 IEKKAALERFQ-DFQWW-MWRECFNSLSLCASKNEKTRCRQLLV-ICD 1297 (1722)
Q Consensus 1253 ~e~~~~~~r~~-~f~~w-~w~~~~~~~~l~a~k~Gkk~~~~~l~-~C~ 1297 (1722)
.|..+++.|.+ ..+.| +...-|+...-.+-+|-||-..+-++ +|+
T Consensus 6 ~e~~~a~~~~~~ete~~~~v~~dye~~~erl~~~~kkLs~~Imvpig~ 53 (514)
T KOG3130|consen 6 AECNAAKARLEVETECRKKVDNDYEALRERLSTLPKKLSYNIMVPIGP 53 (514)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHhhhhcccceeeeccc
Confidence 34444444433 23333 22333443334566788885444443 444
No 118
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=49.72 E-value=7.7e+02 Score=32.77 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000285 460 RKVAIEKATARKMAKESMDLIEDEQLELMDLAA 492 (1722)
Q Consensus 460 ~k~eeEr~~~~~~ake~~~~~e~E~lel~kl~a 492 (1722)
+.++.|++.-....++.+.-+++.+.++..++.
T Consensus 427 rv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~ 459 (546)
T PF07888_consen 427 RVAQKEKEQLQEEKQELLEYIERLEQRLDKVAD 459 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444455555555566666667766666665543
No 119
>PRK12705 hypothetical protein; Provisional
Probab=48.92 E-value=7.7e+02 Score=32.56 Aligned_cols=8 Identities=13% Similarity=-0.026 Sum_probs=3.1
Q ss_pred HHHHHHhc
Q 000285 696 FAWMREKG 703 (1722)
Q Consensus 696 ~~~m~~~g 703 (1722)
..+++++|
T Consensus 375 aeLlkk~~ 382 (508)
T PRK12705 375 AELARKFN 382 (508)
T ss_pred HHHHHhcC
Confidence 33333333
No 120
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.44 E-value=4e+02 Score=36.85 Aligned_cols=11 Identities=18% Similarity=-0.034 Sum_probs=5.4
Q ss_pred ccCCCCHHHHH
Q 000285 643 LLNPLTWHEIF 653 (1722)
Q Consensus 643 ~Ln~lTWpEiL 653 (1722)
+|-.+|.-|-+
T Consensus 697 dl~G~~~~eA~ 707 (771)
T TIGR01069 697 DLRGQRSEEAL 707 (771)
T ss_pred ECCCCCHHHHH
Confidence 34455555444
No 121
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.26 E-value=4.9e+02 Score=36.11 Aligned_cols=9 Identities=22% Similarity=0.468 Sum_probs=4.3
Q ss_pred cCCCCHHHH
Q 000285 644 LNPLTWHEI 652 (1722)
Q Consensus 644 Ln~lTWpEi 652 (1722)
|-.+|.-|-
T Consensus 709 L~G~~~eeA 717 (782)
T PRK00409 709 LRGMRYEEA 717 (782)
T ss_pred CCCCCHHHH
Confidence 344555544
No 122
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=47.71 E-value=1.1e+03 Score=34.06 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhhh
Q 000285 1397 EEVLQLLTILESGIK 1411 (1722)
Q Consensus 1397 ~el~q~l~~le~~ik 1411 (1722)
..++|+|-+++|+..
T Consensus 1176 p~~fq~l~~~~~~~~ 1190 (1317)
T KOG0612|consen 1176 PRIFQILYANEGESG 1190 (1317)
T ss_pred chhHHHHHhhccccc
Confidence 667777777777733
No 123
>PRK12705 hypothetical protein; Provisional
Probab=45.83 E-value=8.5e+02 Score=32.17 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=2.8
Q ss_pred Hhhcccc
Q 000285 764 VALTRDT 770 (1722)
Q Consensus 764 ~als~d~ 770 (1722)
++|--||
T Consensus 352 AGLLHDI 358 (508)
T PRK12705 352 AGLLHDI 358 (508)
T ss_pred HHHHHHc
Confidence 3444443
No 124
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=45.31 E-value=7.7e+02 Score=31.53 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=4.9
Q ss_pred HHHHHhhcC
Q 000285 47 LEKAYASET 55 (1722)
Q Consensus 47 Le~~F~~~~ 55 (1722)
|-..|.+|-
T Consensus 121 l~etY~~cD 129 (518)
T KOG1830|consen 121 LTETYAQCD 129 (518)
T ss_pred HHHHHhccC
Confidence 445565554
No 125
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.42 E-value=8.1e+02 Score=31.53 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=4.8
Q ss_pred Hhhhhhccc
Q 000285 554 FITFADVLG 562 (1722)
Q Consensus 554 L~sF~~~L~ 562 (1722)
|+.||...+
T Consensus 308 l~rFG~~~~ 316 (420)
T COG4942 308 LRRFGQADG 316 (420)
T ss_pred HHHhcccCC
Confidence 455665543
No 126
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=44.01 E-value=1.8e+02 Score=36.80 Aligned_cols=7 Identities=29% Similarity=0.558 Sum_probs=4.1
Q ss_pred cCCCCHH
Q 000285 644 LNPLTWH 650 (1722)
Q Consensus 644 Ln~lTWp 650 (1722)
|++.+|+
T Consensus 410 l~pv~~g 416 (506)
T KOG2507|consen 410 LDPVSGG 416 (506)
T ss_pred cCccchh
Confidence 5666654
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=43.88 E-value=1.2e+02 Score=41.47 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=21.0
Q ss_pred CCCchhHHHHHHHHHHHHHhCCCccCCCCccCCCC
Q 000285 160 YESQQSIMELRAIACVEAQLGEPLREDGPILGMEF 194 (1722)
Q Consensus 160 y~P~~~~~e~~ai~~ve~qlge~~redgP~lg~ef 194 (1722)
|.+++-..-+.|+++++..-|.|+=..---+.+.|
T Consensus 493 yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 493 YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 33344445557788888888877744333355554
No 128
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=43.14 E-value=19 Score=45.93 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=68.3
Q ss_pred cCCCCHHHHHHHHHHHhCCCCcccccccccccCCCCcccchhhcccchhHHHHHHHHHhcCCCccccccccCccchhHHH
Q 000285 644 LNPLTWHEIFRQLALSAGFGPKLKKRSSKWANGKGCEDIVSTIRNGSAAENAFAWMREKGLLLPRRSRHKLTPGTVKFAA 723 (1722)
Q Consensus 644 Ln~lTWpEiLR~~l~a~G~g~~~~k~~~~~~~~~~~~d~~~~~~~g~~~~~a~~~m~~~g~~~~~~~~~rl~pgtvk~a~ 723 (1722)
=|.++-.++|-.|+-.--+|+..- |.... -.||.||||- +.|-+-.- | .-.|....
T Consensus 50 k~~i~~~~LL~lff~l~~~~dk~l-Rklly------thiv~~Ikn~-------n~~~kn~k---------l-nkslq~~~ 105 (616)
T KOG2229|consen 50 KNLIVAEDLLELFFPLLRCGDKNL-RKLLY------THIVTTIKNI-------NKKHKNDK---------L-NKSLQAFM 105 (616)
T ss_pred cCcCCHHHHHHHHHHHHhcCchhH-HHHHH------HHHHHHHHHH-------Hhhcccch---------H-HHHHHHHH
Confidence 366778888888888877777642 11111 2577777753 22222221 1 12578889
Q ss_pred HHHHhhhcC-CCcchhHHHHHHHhhccccCCCCCCchhhHHHhhcccc
Q 000285 724 FHVLSLEGS-KGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDT 770 (1722)
Q Consensus 724 f~vls~~g~-~gl~v~ela~~iqk~glrd~~ts~t~ea~i~~als~d~ 770 (1722)
|.+|-..++ .|.--+.+-.-+-|-++=+ .++|..-.++++||.++
T Consensus 106 fsml~~~d~~~ak~a~~~~~eL~kr~iW~--d~~tV~i~~~acf~~~~ 151 (616)
T KOG2229|consen 106 FSMLDQSDSTAAKMALDTMIELYKRNIWN--DSKTVNIITTACFSKVP 151 (616)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHhcccc--cchhHHHHHHHHhccCc
Confidence 999999888 6666666666666777766 89999999999999777
No 129
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=40.74 E-value=25 Score=46.76 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHH
Q 000285 945 EERLNALVALIGIANEGNSIRAVL 968 (1722)
Q Consensus 945 eeRL~aL~aL~dllL~t~sIR~~L 968 (1722)
++-++.|=+|+|-..=-.+|...|
T Consensus 496 ~~~~~tLFkl~HssNFNTsVQaLm 519 (988)
T KOG2038|consen 496 EEQMKTLFKLTHSSNFNTSVQALM 519 (988)
T ss_pred HHHhHHHHHHHhhcccchhHHHHH
Confidence 556667777777665555555443
No 130
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=40.21 E-value=18 Score=44.94 Aligned_cols=45 Identities=22% Similarity=0.606 Sum_probs=33.7
Q ss_pred HHHHHhhhccccchhhhhccccccccccccccccccccCc-cCCCCCcccccc
Q 000285 1266 QWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSYLC-EDAHCPSCHRTF 1317 (1722)
Q Consensus 1266 ~~w~w~~~~~~~~l~a~k~Gkk~~~~~l~~C~~C~~~y~~-~e~hC~~CH~tf 1317 (1722)
..|+|..++- ..+.-...+.+..|..||...-. ++-+|+.||..-
T Consensus 200 ~~~lwe~~~p-------q~~~~~~~~~~~~C~~C~~~~~~~~~~~CpRC~~~L 245 (418)
T COG2995 200 RRWLWERFYP-------QTLATGAREGLRSCLCCHYILPHDAEPRCPRCGSKL 245 (418)
T ss_pred HHHHHHhhcc-------ccCCCCCcccceecccccccCCHhhCCCCCCCCChh
Confidence 3689997774 11224566778889999996665 899999999876
No 131
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=39.91 E-value=3.6e+02 Score=34.83 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=10.1
Q ss_pred CCCCCCCccccCCCCCcC
Q 000285 517 SLSVFPPKTVRLKRPFSV 534 (1722)
Q Consensus 517 ~Lp~fPP~pv~LkrP~ps 534 (1722)
.+..+||....+..|.+.
T Consensus 153 ~l~~~~~~~~~~~~~~~~ 170 (445)
T PRK13428 153 ELDAMAPSTADVDYPLLA 170 (445)
T ss_pred HhhccCCCchhhcCchhh
Confidence 344566655566666644
No 132
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=39.32 E-value=1.1e+03 Score=31.43 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=9.8
Q ss_pred cCccchhHHHHHHHhhhc
Q 000285 714 LTPGTVKFAAFHVLSLEG 731 (1722)
Q Consensus 714 l~pgtvk~a~f~vls~~g 731 (1722)
|.-|=+..|+=.|-.+.|
T Consensus 534 l~~gdL~~A~~~~~~L~g 551 (582)
T PF09731_consen 534 LERGDLDKAARELNQLKG 551 (582)
T ss_pred HHCCCHHHHHHHHHhCch
Confidence 444455566655555555
No 133
>smart00017 OSTEO Osteopontin. Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite [1,2,3]. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone
Probab=39.17 E-value=28 Score=40.39 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=18.3
Q ss_pred ccccccccCCcccccccCCccccCCCCCCCCCCCCcccCCC
Q 000285 1634 SAEAVDSDDNVQAVEYEQGNWEVGFNGATNGWNRDVMEVSD 1674 (1722)
Q Consensus 1634 ~~e~~~~d~n~q~~~yd~~~~~~~~ng~~~~~~~~~~~~~d 1674 (1722)
+.-+|+-||+-|++ |-+++|- |-+-|++-|
T Consensus 44 ~vSSEEtdD~kQet----------lPsksne-Shd~~DD~d 73 (287)
T smart00017 44 AVSSEETDDFKQET----------LPSKSNE-SHEHTDDLD 73 (287)
T ss_pred cccccccccccccc----------CCCCCcc-Chhhccccc
Confidence 34445667778888 7777666 445454433
No 134
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.34 E-value=1.3e+02 Score=37.81 Aligned_cols=7 Identities=43% Similarity=0.624 Sum_probs=2.6
Q ss_pred ccccccc
Q 000285 222 KIYDRYD 228 (1722)
Q Consensus 222 k~~~~~~ 228 (1722)
+++.|+|
T Consensus 190 ~l~~RqD 196 (440)
T KOG2357|consen 190 KLVKRQD 196 (440)
T ss_pred hhhhhcc
Confidence 3333333
No 135
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=34.74 E-value=18 Score=41.52 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=27.0
Q ss_pred ccccccccccccccccCccCCCCCccccccc
Q 000285 1288 RCRQLLVICDVCLDSYLCEDAHCPSCHRTFG 1318 (1722)
Q Consensus 1288 ~~~~~l~~C~~C~~~y~~~e~hC~~CH~tf~ 1318 (1722)
+-+..--+|..|+-.+-+-..||+.||.-|.
T Consensus 255 rvv~~GfvCsVCLsvfc~p~~~C~~C~skF~ 285 (296)
T COG5242 255 RVVLLGFVCSVCLSVFCRPVPVCKKCKSKFS 285 (296)
T ss_pred cEEEEeeehhhhheeecCCcCcCcccccccc
Confidence 4455667899999999999999999999995
No 136
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=34.52 E-value=32 Score=45.68 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=21.4
Q ss_pred hhhhhccccccccccccccccccccCccCCCCCccccccccCCCcccccch
Q 000285 1279 LCASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSCHRTFGAVDKSSKFSEH 1329 (1722)
Q Consensus 1279 l~a~k~Gkk~~~~~l~~C~~C~~~y~~~e~hC~~CH~tf~~~d~e~~~~~h 1329 (1722)
|-|..+|++-.. .| +.-.++.+.+-+ |.-|-+-+.|-+...|
T Consensus 626 lEaH~NGfRy~s---~R-~~~vdiLfsNIK-----hafFqpc~~Emi~llH 667 (960)
T KOG1189|consen 626 LEAHENGFRYQS---LR-DERVDILFSNIK-----HAFFQPCEGEMIILLH 667 (960)
T ss_pred eeeecCceeeee---cc-ccchhhhhhhhh-----hhhcCccccceeeEee
Confidence 456666665321 22 334455555544 5666555555555544
No 137
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=34.37 E-value=30 Score=47.48 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=8.1
Q ss_pred ccccCCCcc-hHHHHH
Q 000285 1343 DIHVSDSSL-PLGIRL 1357 (1722)
Q Consensus 1343 ~~~~~~~~l-p~~l~~ 1357 (1722)
+...|++-| |..+..
T Consensus 1378 dS~~PdHdLePPkFAk 1393 (3015)
T KOG0943|consen 1378 DSDMPDHDLEPPKFAK 1393 (3015)
T ss_pred cCCCCccCCCCchHHH
Confidence 455666655 555433
No 138
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=34.21 E-value=13 Score=31.04 Aligned_cols=26 Identities=27% Similarity=0.467 Sum_probs=17.1
Q ss_pred ccccccccccccccCccCCCCCcccc
Q 000285 1290 RQLLVICDVCLDSYLCEDAHCPSCHR 1315 (1722)
Q Consensus 1290 ~~~l~~C~~C~~~y~~~e~hC~~CH~ 1315 (1722)
.=.+.+|..|-..+|+-...|+.||.
T Consensus 8 ~l~~~rC~~Cg~~~~pPr~~Cp~C~s 33 (37)
T PF12172_consen 8 RLLGQRCRDCGRVQFPPRPVCPHCGS 33 (37)
T ss_dssp -EEEEE-TTT--EEES--SEETTTT-
T ss_pred EEEEEEcCCCCCEecCCCcCCCCcCc
Confidence 34578999999999999999999984
No 139
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=34.18 E-value=6.6e+02 Score=33.77 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=20.0
Q ss_pred hhHhhcccccccCCCHHHHHHHHHHHHHHHhcchhHHHHHH
Q 000285 929 SWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLE 969 (1722)
Q Consensus 929 ~wl~~L~e~eY~dLsveeRL~aL~aL~dllL~t~sIR~~LE 969 (1722)
+||...-. +| |.+++. .+.-|+|+.+.-..+-...|+
T Consensus 599 pwV~KKIi-Ef--lGeeE~-tLVdFI~s~i~~h~~~q~iL~ 635 (668)
T KOG2253|consen 599 PWVNKKII-EF--LGEEED-TLVDFICSNIRQHSSPQQILD 635 (668)
T ss_pred HHHHHHHH-HH--hCCcch-hHHHHHHHHHHhcCCHHHHHH
Confidence 67666544 22 344443 345677887776665443333
No 140
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=33.77 E-value=1.3e+03 Score=30.71 Aligned_cols=14 Identities=29% Similarity=0.505 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 000285 582 LLGEIHLALLKSII 595 (1722)
Q Consensus 582 LL~EiH~aLLk~ll 595 (1722)
+|+.+...|+-.|+
T Consensus 495 ~~~~~~s~~~S~l~ 508 (582)
T PF09731_consen 495 LLGHLLSYLFSLLL 508 (582)
T ss_pred HHHHHHHHHHheee
Confidence 44444444444433
No 141
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.64 E-value=1.6e+02 Score=37.24 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=5.8
Q ss_pred eeccccchhhhh
Q 000285 77 QMWFCHRRLKDK 88 (1722)
Q Consensus 77 qVWFQNRRaK~K 88 (1722)
+-||+-.|+-..
T Consensus 136 ~~wF~s~~s~le 147 (440)
T KOG2357|consen 136 QAWFGSLRSLLE 147 (440)
T ss_pred HHHHHHHHHHHH
Confidence 445655544433
No 142
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=31.47 E-value=2.6e+02 Score=34.45 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 000285 583 LGEIHLALLKS 593 (1722)
Q Consensus 583 L~EiH~aLLk~ 593 (1722)
+.+||..|.++
T Consensus 239 iKELhqrI~kL 249 (361)
T KOG3634|consen 239 IKELHQRICKL 249 (361)
T ss_pred HHHHHHHHHHH
Confidence 34555555443
No 143
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.68 E-value=1.1e+03 Score=29.15 Aligned_cols=8 Identities=13% Similarity=0.356 Sum_probs=3.4
Q ss_pred ccccHHHH
Q 000285 342 TFNNDAEQ 349 (1722)
Q Consensus 342 ~~~~~e~~ 349 (1722)
.+++...+
T Consensus 62 ~F~D~~ve 69 (309)
T TIGR00570 62 LFEDPTVE 69 (309)
T ss_pred ccccHHHH
Confidence 44443333
No 144
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=30.06 E-value=1.1e+03 Score=31.81 Aligned_cols=28 Identities=11% Similarity=-0.021 Sum_probs=14.7
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhC
Q 000285 153 MPIVRRSYESQQSIMELRAIACVEAQLG 180 (1722)
Q Consensus 153 ~~~~~ryy~P~~~~~e~~ai~~ve~qlg 180 (1722)
|++-.-+|.+....-....+..|.+--|
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g 65 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSG 65 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCC
Confidence 3334445666544444555555655555
No 145
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=28.96 E-value=1.1e+03 Score=29.19 Aligned_cols=34 Identities=38% Similarity=0.393 Sum_probs=19.2
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHhcchhHHHHHH
Q 000285 934 LAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLE 969 (1722)
Q Consensus 934 L~e~eY~dLsveeRL~aL~aL~dllL~t~sIR~~LE 969 (1722)
|.+...-+||+. |.-|.+-+.++.++.++-..++
T Consensus 487 l~sp~s~dLSP~--L~d~~AA~Qla~~gps~~q~l~ 520 (561)
T KOG1103|consen 487 LNSPASMDLSPD--LEDLEAAIQLANAGPSSNQALE 520 (561)
T ss_pred cCCCccCCCCcc--HHHHHHHHHHHhcCCchhHHHH
Confidence 444445566664 3345555666666666665554
No 146
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=28.86 E-value=40 Score=48.23 Aligned_cols=15 Identities=53% Similarity=0.722 Sum_probs=6.9
Q ss_pred cccCCCccccCCCCC
Q 000285 1669 VMEVSDEDEDAFGDD 1683 (1722)
Q Consensus 1669 ~~~~~d~d~~~~~~~ 1683 (1722)
+|++.|||+|.++||
T Consensus 152 ~~d~~~~~~~~~~~~ 166 (2849)
T PTZ00415 152 VIDDDDEDEDEDDDD 166 (2849)
T ss_pred ccCCccccccccccc
Confidence 555555444443333
No 147
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=28.02 E-value=43 Score=42.57 Aligned_cols=30 Identities=30% Similarity=0.545 Sum_probs=24.8
Q ss_pred cccccccccccccccCccCCCCCccccccc
Q 000285 1289 CRQLLVICDVCLDSYLCEDAHCPSCHRTFG 1318 (1722)
Q Consensus 1289 ~~~~l~~C~~C~~~y~~~e~hC~~CH~tf~ 1318 (1722)
-.+-+..|..|.-++-.+..||+.||.+-.
T Consensus 217 ~~~~l~~C~~Cd~l~~~~~a~CpRC~~~L~ 246 (419)
T PRK15103 217 LRQGLRSCSCCTAILPADQPVCPRCHTKGY 246 (419)
T ss_pred cccCCCcCCCCCCCCCCCCCCCCCCCCcCc
Confidence 345677899999998777889999999873
No 148
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=27.93 E-value=30 Score=40.59 Aligned_cols=10 Identities=10% Similarity=0.255 Sum_probs=6.4
Q ss_pred CCCcchhhcc
Q 000285 1608 HRNLDEEEWG 1617 (1722)
Q Consensus 1608 ~r~~~~e~w~ 1617 (1722)
+=|...+-|+
T Consensus 178 ~yn~~~~~fn 187 (303)
T KOG3064|consen 178 IYNFRQHAFN 187 (303)
T ss_pred cccchHHHHH
Confidence 4466667775
No 149
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=27.93 E-value=6.3e+02 Score=33.38 Aligned_cols=8 Identities=25% Similarity=0.277 Sum_probs=5.0
Q ss_pred CCCHHHHH
Q 000285 646 PLTWHEIF 653 (1722)
Q Consensus 646 ~lTWpEiL 653 (1722)
.+-.||||
T Consensus 519 riRvPEIi 526 (645)
T KOG0681|consen 519 RIRVPEII 526 (645)
T ss_pred eeccceee
Confidence 35667766
No 150
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=26.92 E-value=5.4e+02 Score=31.88 Aligned_cols=8 Identities=0% Similarity=-0.039 Sum_probs=3.1
Q ss_pred hhhhHHhH
Q 000285 547 LLMVWRFF 554 (1722)
Q Consensus 547 LLmVw~FL 554 (1722)
+-.+|.-+
T Consensus 239 iKELhqrI 246 (361)
T KOG3634|consen 239 IKELHQRI 246 (361)
T ss_pred HHHHHHHH
Confidence 33344433
No 151
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=26.63 E-value=46 Score=46.42 Aligned_cols=16 Identities=31% Similarity=0.653 Sum_probs=10.6
Q ss_pred HHHHhhhhHHHH----HHhh
Q 000285 1257 AALERFQDFQWW----MWRE 1272 (1722)
Q Consensus 1257 ~~~~r~~~f~~w----~w~~ 1272 (1722)
.+++++++--|| ||.+
T Consensus 1065 ~a~~~~k~i~kw~kk~~w~~ 1084 (1640)
T KOG0262|consen 1065 KASKYIKKILKWKKKHMWFE 1084 (1640)
T ss_pred HHHHHHHHHHHHHhhhccch
Confidence 456677777777 6663
No 152
>PF05071 NDUFA12: NADH ubiquinone oxidoreductase subunit NDUFA12; InterPro: IPR007763 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents the 17.2kDa subunit from NADH:ubiquinone oxidoreductase and its homologues []. This subunit is believed to be one of the 36 structural complex I proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0009055 electron carrier activity, 0016020 membrane
Probab=26.62 E-value=52 Score=34.05 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=23.2
Q ss_pred ccCCccCCCCceeecccCCCCCCCCCCceEEeccC
Q 000285 1112 LPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHD 1146 (1722)
Q Consensus 1112 ~pLG~DR~~nRYW~F~~~~s~~dp~~~rI~VE~~d 1146 (1722)
.++|.|-++|+||-+. .+..+..+-||+..+
T Consensus 2 ~lVG~D~~GN~YyE~~----~~~~~~~rRwV~y~~ 32 (105)
T PF05071_consen 2 TLVGTDEFGNKYYENP----RDEQGRRRRWVEYAG 32 (105)
T ss_pred CEeeEeCCCCEEEeec----CCCcCCCcEEEEcCC
Confidence 4789999999999997 234456677777643
No 153
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=26.49 E-value=68 Score=34.53 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=49.9
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHhhccccCCCCCCchhhHHHhhcccccchhccCCCcccccCCccCChhhHHHHHHHH
Q 000285 722 AAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRPAFRKDPADAEAILAAA 801 (1722)
Q Consensus 722 a~f~vls~~g~~gl~v~ela~~iqk~glrd~~ts~t~ea~i~~als~d~~Lfer~apsty~~r~~~r~~p~~~~~~~~~~ 801 (1722)
.|+.+|... .+-++..+|...||+...-.-..-...-+-++.-|.=|. -|-.+.=++|.||.||-.+--+ |.|....
T Consensus 8 vAy~iL~~~-~~~m~f~dL~~ev~~~~~~s~e~~~~~iaq~YtdLn~DG-RFi~lG~n~WgLr~w~p~d~i~-e~~~~~~ 84 (129)
T PRK02363 8 VAYEILKEK-KEPMSFYDLVNEIQKYLGKSDEEIRERIAQFYTDLNLDG-RFISLGDNKWGLRSWYPVDEID-EEIIPLE 84 (129)
T ss_pred HHHHHHHHc-CCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhccC-CeeEcCCCceecccccChhhhh-hhhhcch
Confidence 356666655 567888888888886644211111122234455666677 7999999999999999887744 4555444
No 154
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.45 E-value=7.2e+02 Score=28.68 Aligned_cols=26 Identities=27% Similarity=0.171 Sum_probs=17.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHhccCCC
Q 000285 473 AKESMDLIEDEQLELMDLAAASKGLS 498 (1722)
Q Consensus 473 ake~~~~~e~E~lel~kl~a~sk~l~ 498 (1722)
..+..+.+.++-++.+-+.+..++..
T Consensus 168 iersknfITReNLea~Ie~AL~~p~~ 193 (227)
T KOG4691|consen 168 IERSKNFITRENLEARIEAALDSPKN 193 (227)
T ss_pred HHHHhhhhhHHhHHHHHHHHHcCccc
Confidence 34456778888888777777666443
No 155
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=26.43 E-value=5.6e+02 Score=32.39 Aligned_cols=126 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCCCCccCCCCCCCCCC--------cccccCCCCCCCCCCCCCCCCCCCCCCCCC---CcccccccH----------HH
Q 000285 290 QQDKPAHIFSSPNGGEDS--------LLQRESTSNNRKNAQSTSHPIFGTEDPYLL---SDGQTFNND----------AE 348 (1722)
Q Consensus 290 ~~~~p~~~~psp~~~~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~---s~~~~~~~~----------e~ 348 (1722)
+..+|.+++-+|++.... .|.-++. .+..|.+-|+.. .+.+-+.+- ++
T Consensus 218 ppsppvPVmHsp~rk~t~kdqqdWKIPp~ISNW-----------KNpkGYTipLdkRlaadgrglq~v~INdnFaKlseA 286 (506)
T KOG2441|consen 218 PPSPPVPVMHSPSRKMTAKDQQDWKIPPCISNW-----------KNPKGYTIPLDKRLAADGRGLQDVHINDNFAKLSEA 286 (506)
T ss_pred CCCCCCCcccCCCccccccccccccCCchhhcC-----------cCCCCceecchhhhhhccCCcccceecccHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000285 349 QRMEKKRKCDEARIAREVEANEIRIQKELERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKR 426 (1722)
Q Consensus 349 ~r~Ek~rk~eeer~~ke~e~eeer~~kE~Ek~e~errkeEer~rKE~Er~ere~~kEeEr~ererq~EeEr~~rE~~r 426 (1722)
.-...++.+++-+.+.+.++......++...++...-....+..+---+.-...+..+|...|++.+.+.+++++..+
T Consensus 287 Ly~adrKAReeV~~ra~~~r~ma~kek~~kE~kL~elAQkAR~~r~g~~~~~~~ked~e~~~R~eiR~~Rrke~~~~~ 364 (506)
T KOG2441|consen 287 LYIADRKAREEVRMRAQLERKMAEKEKEEKEQKLRELAQKAREERGGPQTGAIEKEDREARTREEIRRDRRKEREKDR 364 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHhh
No 156
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=25.43 E-value=1.9e+02 Score=35.03 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhcchhHH
Q 000285 944 VEERLNALVALIGIANEGNSIR 965 (1722)
Q Consensus 944 veeRL~aL~aL~dllL~t~sIR 965 (1722)
+++-+++++-|-+....+.+|+
T Consensus 339 ~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 339 VESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHHHHHHhcCCceecceeee
Confidence 3444444444444444444444
No 157
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=25.12 E-value=45 Score=47.73 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=11.7
Q ss_pred CCCCCCcchhhcccccccccccccccccCccc
Q 000285 1605 SGLHRNLDEEEWGVGKERMINMEDAENSNSAE 1636 (1722)
Q Consensus 1605 ~~s~r~~~~e~w~~~~~~~~~~~~~~n~~~~e 1636 (1722)
+.-.|+|++|+ |---||-+..+
T Consensus 134 ~~~~r~l~eed----------~~~~~~~~~d~ 155 (2849)
T PTZ00415 134 RRRARHLAEED----------MSPRDNFVIDD 155 (2849)
T ss_pred hHHhhccchhh----------cCcccccccCC
Confidence 34456776443 44556655533
No 158
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=24.69 E-value=22 Score=29.67 Aligned_cols=25 Identities=24% Similarity=0.642 Sum_probs=17.9
Q ss_pred ccccccccccCccC---------CCCCccccccc
Q 000285 1294 VICDVCLDSYLCED---------AHCPSCHRTFG 1318 (1722)
Q Consensus 1294 ~~C~~C~~~y~~~e---------~hC~~CH~tf~ 1318 (1722)
..|+.|...|.-.+ -.|+.||.+|.
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWY 36 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEE
Confidence 56888888665542 47999988874
No 159
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=23.79 E-value=2.5e+03 Score=30.92 Aligned_cols=20 Identities=40% Similarity=0.471 Sum_probs=9.1
Q ss_pred CCCHHHHHHHHHHHHHHHhc
Q 000285 941 HLSVEERLNALVALIGIANE 960 (1722)
Q Consensus 941 dLsveeRL~aL~aL~dllL~ 960 (1722)
+|+.++=+++|.-|++.+-.
T Consensus 1066 ~lP~e~~~~~l~~l~~~l~~ 1085 (1201)
T PF12128_consen 1066 ELPSEEYVNALRELLDILPS 1085 (1201)
T ss_pred cCCCHHHHHHHHHHHHHHhh
Confidence 44444444444444444333
No 160
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=23.42 E-value=41 Score=47.38 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=54.7
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeeccccchhhhhhcc
Q 000285 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEK 91 (1722)
Q Consensus 31 ~~rr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~LgLserqVqVWFQNRRaK~Kr~~ 91 (1722)
..+-.|++++..|+..|...|....||.-.++..++..|++..|.+..||+++++++....
T Consensus 443 e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~ 503 (1406)
T KOG1146|consen 443 EPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNH 503 (1406)
T ss_pred hhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhcccc
Confidence 3455688899999999999999999999999999999999999999999999888888743
No 161
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.94 E-value=1.5e+03 Score=27.93 Aligned_cols=7 Identities=14% Similarity=-0.111 Sum_probs=2.7
Q ss_pred CCCCCCC
Q 000285 240 HEYQSLS 246 (1722)
Q Consensus 240 ~~~q~~P 246 (1722)
+.|.+.|
T Consensus 151 CLYFI~P 157 (406)
T KOG3859|consen 151 CLYFISP 157 (406)
T ss_pred EEEEecC
Confidence 3343333
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.77 E-value=2.5e+03 Score=30.27 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCCCCC
Q 000285 191 GMEFDSLPPDAFGAPI 206 (1722)
Q Consensus 191 g~efdplPP~~f~~pi 206 (1722)
-+.|-|.|+-.-..++
T Consensus 814 ~~~~~P~~~~~~~~~~ 829 (1049)
T KOG0307|consen 814 AFSFTPPPSSGAADQY 829 (1049)
T ss_pred CcCCCCCCcccccccC
Confidence 3444444444444444
No 163
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=21.63 E-value=54 Score=43.87 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=8.2
Q ss_pred cCCCCCCCCCCCCCCCC
Q 000285 190 LGMEFDSLPPDAFGAPI 206 (1722)
Q Consensus 190 lg~efdplPP~~f~~pi 206 (1722)
+|-.-|-||-.....|+
T Consensus 106 ~~Q~~~~l~s~~ls~~q 122 (1194)
T KOG4246|consen 106 YGQKTDDLYSDKLSGYQ 122 (1194)
T ss_pred cCCcccccccccccCCC
Confidence 34444455555555544
No 164
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=21.41 E-value=63 Score=42.15 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCcCCcchHHHHHHHHHHHH
Q 000285 1156 EAFDALLSSLDARGTRESHLRIMLQKIET 1184 (1722)
Q Consensus 1156 eeld~Ll~~Ln~rG~RE~~Lk~~L~~~~~ 1184 (1722)
+++-.-|..-..+|-|=+.|-+.|+..+.
T Consensus 594 ~qF~rsit~rS~~g~rms~~fk~I~dlKK 622 (1001)
T COG5406 594 EQFLRSITSRSIRGNRMSDLFKEINDLKK 622 (1001)
T ss_pred hhhhhheeeeeccCccHHHHHHHHHHHHh
Confidence 45555556666778888888877766444
No 165
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=21.00 E-value=92 Score=41.83 Aligned_cols=7 Identities=43% Similarity=1.455 Sum_probs=3.0
Q ss_pred hhhhHHh
Q 000285 547 LLMVWRF 553 (1722)
Q Consensus 547 LLmVw~F 553 (1722)
+|++|-|
T Consensus 288 ~Ll~Wyf 294 (988)
T KOG2038|consen 288 ILLMWYF 294 (988)
T ss_pred eehHHHH
Confidence 4444433
No 166
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=20.28 E-value=57 Score=34.35 Aligned_cols=24 Identities=29% Similarity=0.753 Sum_probs=22.4
Q ss_pred ccccccccCccCCCCCcccccccc
Q 000285 1296 CDVCLDSYLCEDAHCPSCHRTFGA 1319 (1722)
Q Consensus 1296 C~~C~~~y~~~e~hC~~CH~tf~~ 1319 (1722)
|+.|....-..+-||+.|+.+...
T Consensus 1 CPvCg~~l~vt~l~C~~C~t~i~G 24 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGTEIEG 24 (113)
T ss_pred CCCCCCceEEEEEEcCCCCCEEEe
Confidence 899999999999999999999964
No 167
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=20.27 E-value=1.9e+03 Score=28.32 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=3.1
Q ss_pred hhhhHHhH
Q 000285 547 LLMVWRFF 554 (1722)
Q Consensus 547 LLmVw~FL 554 (1722)
|+.|.+.|
T Consensus 206 l~~v~~~l 213 (445)
T PRK13428 206 LVSVAKLL 213 (445)
T ss_pred HHHHHHHH
Confidence 34443333
No 168
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.24 E-value=1.7e+03 Score=30.01 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhCCCcc
Q 000285 168 ELRAIACVEAQLGEPLR 184 (1722)
Q Consensus 168 e~~ai~~ve~qlge~~r 184 (1722)
-|.||..+-+.+-+-|.
T Consensus 162 vh~av~~~~reIee~L~ 178 (652)
T COG2433 162 VHGAVKRVVREIEEKLD 178 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455554444444443
No 169
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.21 E-value=2.9e+03 Score=30.31 Aligned_cols=7 Identities=43% Similarity=0.781 Sum_probs=2.9
Q ss_pred chhccCC
Q 000285 772 LFERIAP 778 (1722)
Q Consensus 772 Lfer~ap 778 (1722)
-|+.|+-
T Consensus 1024 ~~~~i~~ 1030 (1201)
T PF12128_consen 1024 FFEAISD 1030 (1201)
T ss_pred cccccce
Confidence 3444443
Done!