Query 000286
Match_columns 1720
No_of_seqs 600 out of 2876
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 02:51:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0170 E3 ubiquitin protein l 100.0 3E-141 6E-146 1218.5 38.3 618 1045-1720 1-621 (621)
2 KOG0168 Putative ubiquitin fus 100.0 2.5E-97 5E-102 894.3 48.0 743 9-791 164-947 (1051)
3 COG5021 HUL4 Ubiquitin-protein 100.0 1.2E-75 2.7E-80 746.5 25.4 432 1213-1720 412-872 (872)
4 KOG0941 E3 ubiquitin protein l 100.0 8.8E-74 1.9E-78 698.8 27.2 418 1207-1719 419-849 (850)
5 cd00078 HECTc HECT domain; C-t 100.0 1.5E-72 3.3E-77 682.6 28.3 341 1301-1718 1-352 (352)
6 KOG0942 E3 ubiquitin protein l 100.0 6.4E-73 1.4E-77 690.4 24.7 386 1244-1720 599-1001(1001)
7 smart00119 HECTc Domain Homolo 100.0 5.3E-71 1.2E-75 661.7 26.1 320 1324-1720 7-336 (336)
8 KOG4427 E3 ubiquitin protein l 100.0 2.7E-65 5.8E-70 605.5 27.1 397 1245-1720 670-1096(1096)
9 KOG0939 E3 ubiquitin-protein l 100.0 3.2E-65 7E-70 612.1 22.0 381 1229-1719 323-719 (720)
10 PF00632 HECT: HECT-domain (ub 100.0 1.2E-59 2.6E-64 564.3 18.3 307 1348-1720 1-317 (317)
11 COG5064 SRP1 Karyopherin (impo 100.0 6.9E-50 1.5E-54 443.3 27.7 387 12-482 71-479 (526)
12 KOG0166 Karyopherin (importin) 100.0 2.8E-48 6.1E-53 467.3 32.9 388 12-483 66-470 (514)
13 KOG0940 Ubiquitin protein liga 100.0 6.3E-39 1.4E-43 378.4 13.9 329 1299-1711 15-358 (358)
14 KOG0943 Predicted ubiquitin-pr 100.0 1.2E-37 2.6E-42 376.8 22.7 265 1417-1717 2739-3014(3015)
15 KOG0166 Karyopherin (importin) 100.0 3E-28 6.5E-33 294.5 22.3 298 11-324 108-415 (514)
16 COG5064 SRP1 Karyopherin (impo 99.9 2.1E-26 4.5E-31 257.0 12.7 296 11-323 113-421 (526)
17 PLN03200 cellulose synthase-in 99.9 2.1E-24 4.6E-29 293.5 34.2 378 11-482 188-621 (2102)
18 PLN03200 cellulose synthase-in 99.9 2.7E-23 5.9E-28 282.9 33.1 395 13-456 405-811 (2102)
19 KOG4224 Armadillo repeat prote 99.7 2.1E-16 4.6E-21 179.0 18.6 291 13-323 127-424 (550)
20 KOG4224 Armadillo repeat prote 99.6 4.6E-15 1E-19 168.3 18.7 262 10-290 165-431 (550)
21 KOG0168 Putative ubiquitin fus 99.5 1.5E-11 3.2E-16 152.5 35.1 289 12-334 211-511 (1051)
22 PF05804 KAP: Kinesin-associat 99.5 1.4E-11 2.9E-16 158.6 31.9 372 11-474 289-666 (708)
23 PF05804 KAP: Kinesin-associat 99.3 1.2E-09 2.7E-14 140.8 35.0 339 50-480 284-630 (708)
24 PF10508 Proteasom_PSMB: Prote 99.2 1.1E-08 2.3E-13 130.7 34.6 367 16-457 42-421 (503)
25 PF04826 Arm_2: Armadillo-like 99.1 1E-09 2.2E-14 126.9 17.8 196 52-264 8-206 (254)
26 cd00020 ARM Armadillo/beta-cat 99.1 4.1E-10 8.9E-15 114.9 11.0 115 52-168 3-120 (120)
27 KOG4199 Uncharacterized conser 99.0 1.3E-08 2.8E-13 116.0 20.3 263 13-286 146-426 (461)
28 KOG1048 Neural adherens juncti 99.0 1.2E-08 2.7E-13 128.7 21.2 266 12-288 233-666 (717)
29 PF10508 Proteasom_PSMB: Prote 99.0 6.5E-08 1.4E-12 123.6 24.8 252 12-290 3-257 (503)
30 PF04826 Arm_2: Armadillo-like 98.9 2.5E-08 5.5E-13 115.5 17.4 197 10-213 10-209 (254)
31 cd00020 ARM Armadillo/beta-cat 98.9 1.8E-08 3.9E-13 102.7 12.8 118 134-263 2-120 (120)
32 KOG4199 Uncharacterized conser 98.9 1E-07 2.2E-12 109.0 18.9 276 21-312 115-414 (461)
33 PRK09687 putative lyase; Provi 98.5 5.4E-06 1.2E-10 98.2 18.8 212 12-287 23-234 (280)
34 PTZ00429 beta-adaptin; Provisi 98.5 0.00013 2.9E-09 96.2 33.2 372 10-462 30-439 (746)
35 KOG2122 Beta-catenin-binding p 98.4 1.9E-06 4E-11 112.5 12.8 231 50-290 333-586 (2195)
36 PRK09687 putative lyase; Provi 98.4 8.7E-06 1.9E-10 96.4 17.6 208 13-286 55-262 (280)
37 KOG1048 Neural adherens juncti 98.3 2E-06 4.4E-11 109.2 11.8 198 57-263 234-452 (717)
38 PF01602 Adaptin_N: Adaptin N 98.3 6.8E-05 1.5E-09 97.1 25.8 233 13-286 8-241 (526)
39 PF01602 Adaptin_N: Adaptin N 98.3 4.4E-05 9.5E-10 98.9 22.8 215 15-265 82-298 (526)
40 KOG2122 Beta-catenin-binding p 98.3 5.5E-06 1.2E-10 108.4 13.2 224 29-265 367-603 (2195)
41 cd00256 VATPase_H VATPase_H, r 98.2 0.00016 3.5E-09 89.3 23.5 356 55-456 52-425 (429)
42 PTZ00429 beta-adaptin; Provisi 98.2 0.00059 1.3E-08 90.3 29.8 306 54-467 30-337 (746)
43 PF03224 V-ATPase_H_N: V-ATPas 98.2 2.1E-05 4.5E-10 95.1 15.2 218 56-286 55-293 (312)
44 KOG0946 ER-Golgi vesicle-tethe 98.1 0.00097 2.1E-08 84.4 27.4 339 54-457 20-400 (970)
45 KOG2160 Armadillo/beta-catenin 98.1 0.00017 3.8E-09 85.2 19.3 185 23-210 93-283 (342)
46 KOG2171 Karyopherin (importin) 98.1 0.0027 5.9E-08 84.2 31.8 439 13-480 37-526 (1075)
47 KOG1241 Karyopherin (importin) 98.0 0.00028 6E-09 89.0 20.6 409 15-471 367-826 (859)
48 KOG4500 Rho/Rac GTPase guanine 97.9 0.00023 5E-09 84.4 17.2 231 71-324 56-303 (604)
49 KOG2160 Armadillo/beta-catenin 97.9 0.00066 1.4E-08 80.5 20.9 179 69-261 95-280 (342)
50 KOG0946 ER-Golgi vesicle-tethe 97.8 0.0023 5.1E-08 81.1 24.4 269 12-289 22-328 (970)
51 PRK13800 putative oxidoreducta 97.8 0.00071 1.5E-08 92.9 20.8 184 12-263 621-804 (897)
52 KOG4500 Rho/Rac GTPase guanine 97.8 0.01 2.2E-07 71.1 26.5 389 17-480 92-501 (604)
53 PRK13800 putative oxidoreducta 97.7 0.0011 2.4E-08 91.1 21.5 197 11-261 651-865 (897)
54 PF00514 Arm: Armadillo/beta-c 97.7 2.5E-05 5.3E-10 64.8 3.4 40 89-129 2-41 (41)
55 KOG1241 Karyopherin (importin) 97.7 0.0067 1.5E-07 77.1 25.9 379 18-466 265-678 (859)
56 KOG1293 Proteins containing ar 97.7 0.007 1.5E-07 76.2 25.6 239 15-265 12-263 (678)
57 PF03224 V-ATPase_H_N: V-ATPas 97.7 0.0003 6.4E-09 85.1 13.8 214 16-236 62-294 (312)
58 cd00256 VATPase_H VATPase_H, r 97.7 0.003 6.5E-08 78.3 21.6 269 12-292 101-412 (429)
59 KOG2171 Karyopherin (importin) 97.6 0.0011 2.4E-08 87.7 17.8 238 14-264 350-595 (1075)
60 KOG1222 Kinesin associated pro 97.5 0.0035 7.6E-08 75.3 18.7 217 51-289 299-560 (791)
61 KOG2023 Nuclear transport rece 97.4 0.0061 1.3E-07 76.1 19.6 109 101-210 395-506 (885)
62 KOG2759 Vacuolar H+-ATPase V1 97.4 0.028 6.1E-07 67.8 23.7 352 56-456 65-438 (442)
63 PF12348 CLASP_N: CLASP N term 97.3 0.0014 2.9E-08 75.6 12.1 191 22-222 16-216 (228)
64 KOG1293 Proteins containing ar 97.3 0.0053 1.1E-07 77.2 17.4 160 71-234 391-557 (678)
65 COG5215 KAP95 Karyopherin (imp 97.3 0.005 1.1E-07 75.5 16.5 414 12-481 176-628 (858)
66 KOG2759 Vacuolar H+-ATPase V1 97.3 0.016 3.6E-07 69.8 20.2 266 14-290 116-423 (442)
67 KOG1058 Vesicle coat complex C 97.1 0.24 5.2E-06 63.4 28.8 329 12-425 20-359 (948)
68 PF12460 MMS19_C: RNAPII trans 97.1 0.18 3.9E-06 63.7 27.9 376 14-467 1-405 (415)
69 PF13646 HEAT_2: HEAT repeats; 96.9 0.0042 9.1E-08 60.0 8.8 87 14-125 1-88 (88)
70 KOG1059 Vesicle coat complex A 96.9 0.41 8.8E-06 61.3 27.7 70 15-92 147-216 (877)
71 KOG3678 SARM protein (with ste 96.9 0.0067 1.5E-07 72.6 11.7 175 52-234 176-360 (832)
72 PF13646 HEAT_2: HEAT repeats; 96.9 0.0035 7.5E-08 60.6 8.0 87 58-164 1-88 (88)
73 KOG2023 Nuclear transport rece 96.9 0.007 1.5E-07 75.7 12.1 150 100-265 129-287 (885)
74 KOG1061 Vesicle coat complex A 96.9 0.056 1.2E-06 69.7 20.5 381 12-462 13-421 (734)
75 KOG0213 Splicing factor 3b, su 96.8 0.25 5.5E-06 62.9 24.9 233 11-264 715-955 (1172)
76 KOG4646 Uncharacterized conser 96.8 0.0034 7.3E-08 64.4 7.0 132 99-233 16-149 (173)
77 KOG1222 Kinesin associated pro 96.8 0.045 9.8E-07 66.2 17.4 257 11-289 344-603 (791)
78 PF13513 HEAT_EZ: HEAT-like re 96.7 0.0018 3.9E-08 57.2 4.0 55 71-127 1-55 (55)
79 KOG1242 Protein containing ada 96.7 0.75 1.6E-05 58.6 27.9 337 11-411 95-443 (569)
80 KOG1062 Vesicle coat complex A 96.6 0.61 1.3E-05 60.6 26.8 354 11-419 7-386 (866)
81 PF05536 Neurochondrin: Neuroc 96.6 0.12 2.6E-06 67.1 21.2 241 107-420 12-269 (543)
82 PF13513 HEAT_EZ: HEAT-like re 96.5 0.0025 5.3E-08 56.3 4.0 54 154-207 2-55 (55)
83 smart00185 ARM Armadillo/beta- 96.5 0.0032 6.8E-08 51.7 4.0 39 90-129 3-41 (41)
84 COG5215 KAP95 Karyopherin (imp 96.5 0.15 3.3E-06 63.1 19.6 373 20-464 271-676 (858)
85 PF13764 E3_UbLigase_R4: E3 ub 96.4 0.082 1.8E-06 70.5 18.5 228 55-285 116-385 (802)
86 PF05536 Neurochondrin: Neuroc 96.4 0.074 1.6E-06 69.0 17.6 196 10-210 3-214 (543)
87 PF00514 Arm: Armadillo/beta-c 96.1 0.011 2.5E-07 48.9 5.5 41 214-263 1-41 (41)
88 KOG3678 SARM protein (with ste 96.1 0.072 1.6E-06 64.2 13.6 177 11-194 179-362 (832)
89 KOG1824 TATA-binding protein-i 96.0 0.4 8.8E-06 62.8 20.6 245 16-268 9-366 (1233)
90 KOG2274 Predicted importin 9 [ 96.0 0.6 1.3E-05 61.3 22.0 220 58-289 451-672 (1005)
91 KOG1240 Protein kinase contain 96.0 0.15 3.2E-06 68.2 16.9 276 14-326 464-770 (1431)
92 COG5369 Uncharacterized conser 96.0 0.11 2.3E-06 64.1 14.6 200 78-287 410-619 (743)
93 KOG1062 Vesicle coat complex A 95.8 2.8 6E-05 54.8 26.7 220 17-265 112-381 (866)
94 PF10165 Ric8: Guanine nucleot 95.8 0.12 2.6E-06 65.7 15.0 158 50-207 16-216 (446)
95 PF12348 CLASP_N: CLASP N term 95.7 0.062 1.3E-06 61.9 11.1 193 66-273 16-216 (228)
96 TIGR02270 conserved hypothetic 95.6 0.65 1.4E-05 58.2 20.2 13 399-411 283-295 (410)
97 COG1413 FOG: HEAT repeat [Ener 95.6 0.28 6.1E-06 59.9 17.1 187 13-264 44-243 (335)
98 KOG1991 Nuclear transport rece 95.6 1 2.3E-05 59.8 22.3 335 55-468 409-772 (1010)
99 TIGR02270 conserved hypothetic 95.5 0.3 6.5E-06 61.2 16.9 151 57-261 55-205 (410)
100 PF05004 IFRD: Interferon-rela 95.5 0.29 6.2E-06 59.2 16.3 193 13-211 44-259 (309)
101 PF14664 RICTOR_N: Rapamycin-i 95.5 0.43 9.2E-06 59.2 17.7 154 15-174 28-182 (371)
102 COG5096 Vesicle coat complex, 95.4 3.3 7.2E-05 55.0 26.3 168 21-209 28-195 (757)
103 KOG1060 Vesicle coat complex A 95.3 7.6 0.00017 50.8 27.8 180 7-209 30-209 (968)
104 KOG1059 Vesicle coat complex A 95.3 0.91 2E-05 58.3 19.5 210 22-264 119-366 (877)
105 KOG1242 Protein containing ada 95.2 0.19 4.1E-06 63.7 13.4 205 13-237 255-465 (569)
106 PF14664 RICTOR_N: Rapamycin-i 95.2 2.1 4.6E-05 53.1 22.4 191 34-235 4-198 (371)
107 KOG1517 Guanine nucleotide bin 95.1 0.49 1.1E-05 62.7 17.0 265 7-285 467-754 (1387)
108 COG5369 Uncharacterized conser 95.1 0.086 1.9E-06 65.0 9.6 179 51-234 426-617 (743)
109 COG5181 HSH155 U2 snRNP splice 95.0 0.42 9.1E-06 59.9 15.3 253 10-298 602-863 (975)
110 PF10165 Ric8: Guanine nucleot 95.0 1.2 2.7E-05 56.6 20.4 231 24-267 43-341 (446)
111 KOG4646 Uncharacterized conser 95.0 0.089 1.9E-06 54.4 8.1 119 50-170 10-130 (173)
112 KOG0213 Splicing factor 3b, su 94.9 0.34 7.4E-06 61.7 14.2 242 14-291 801-1051(1172)
113 PF12460 MMS19_C: RNAPII trans 94.9 0.84 1.8E-05 57.7 18.3 203 14-233 191-414 (415)
114 KOG1517 Guanine nucleotide bin 94.7 0.52 1.1E-05 62.4 15.6 231 76-321 489-750 (1387)
115 KOG2137 Protein kinase [Signal 94.6 0.4 8.6E-06 62.0 14.0 158 134-323 384-543 (700)
116 PF12717 Cnd1: non-SMC mitotic 94.1 1.1 2.3E-05 50.0 14.9 110 26-150 1-112 (178)
117 smart00185 ARM Armadillo/beta- 94.0 0.063 1.4E-06 43.9 3.8 35 134-168 7-41 (41)
118 KOG4413 26S proteasome regulat 93.9 1.8 3.9E-05 50.9 16.1 236 14-263 84-377 (524)
119 KOG1060 Vesicle coat complex A 93.8 0.69 1.5E-05 59.8 13.7 213 11-267 282-500 (968)
120 COG5181 HSH155 U2 snRNP splice 93.7 1.4 3E-05 55.5 15.8 188 19-210 653-871 (975)
121 KOG2973 Uncharacterized conser 93.7 3.9 8.5E-05 48.3 18.4 261 12-288 3-297 (353)
122 KOG1789 Endocytosis protein RM 93.7 4.7 0.0001 53.6 20.7 260 11-290 1770-2144(2235)
123 KOG1824 TATA-binding protein-i 93.6 2.1 4.6E-05 56.6 17.6 279 6-323 885-1192(1233)
124 KOG2274 Predicted importin 9 [ 93.3 4.2 9.2E-05 53.9 19.8 210 18-236 496-719 (1005)
125 PF05918 API5: Apoptosis inhib 93.3 9.7 0.00021 49.3 22.9 293 31-420 2-305 (556)
126 COG5656 SXM1 Importin, protein 93.1 16 0.00034 47.8 23.8 148 55-203 407-565 (970)
127 KOG0414 Chromosome condensatio 93.1 1.2 2.5E-05 60.4 14.7 186 28-237 895-1083(1251)
128 PF07814 WAPL: Wings apart-lik 93.0 1.1 2.4E-05 55.5 13.9 256 5-266 14-358 (361)
129 KOG1061 Vesicle coat complex A 92.9 0.59 1.3E-05 60.7 11.4 188 57-267 122-312 (734)
130 KOG0212 Uncharacterized conser 92.8 4 8.7E-05 51.5 17.7 229 20-267 175-410 (675)
131 PF11698 V-ATPase_H_C: V-ATPas 92.8 0.16 3.6E-06 52.1 5.1 72 57-129 44-115 (119)
132 KOG1240 Protein kinase contain 92.2 2.6 5.7E-05 57.1 16.0 222 17-265 427-687 (1431)
133 KOG0212 Uncharacterized conser 92.1 8.1 0.00018 48.9 19.1 188 10-209 248-444 (675)
134 COG5096 Vesicle coat complex, 92.0 2.8 6.1E-05 55.7 16.1 70 56-130 127-196 (757)
135 KOG3036 Protein involved in ce 92.0 11 0.00024 43.3 18.4 207 6-221 20-255 (293)
136 PF06371 Drf_GBD: Diaphanous G 92.0 0.44 9.5E-06 53.1 7.9 115 10-128 64-186 (187)
137 COG5240 SEC21 Vesicle coat com 91.8 2.1 4.5E-05 53.7 13.6 181 16-208 212-406 (898)
138 KOG1820 Microtubule-associated 91.1 5.3 0.00012 53.9 17.6 182 20-210 261-444 (815)
139 KOG2973 Uncharacterized conser 90.9 27 0.00058 41.7 20.6 115 141-272 5-120 (353)
140 KOG4413 26S proteasome regulat 90.8 4.9 0.00011 47.4 14.5 176 57-238 83-268 (524)
141 PF11864 DUF3384: Domain of un 90.1 19 0.00042 46.3 21.0 196 25-237 82-313 (464)
142 PF11865 DUF3385: Domain of un 89.7 1.5 3.2E-05 48.0 9.0 147 56-209 10-157 (160)
143 PF12755 Vac14_Fab1_bd: Vacuol 89.5 1.2 2.7E-05 44.4 7.6 78 156-237 3-80 (97)
144 PF12719 Cnd3: Nuclear condens 89.5 3.7 8E-05 49.5 13.2 175 99-289 26-210 (298)
145 COG1413 FOG: HEAT repeat [Ener 89.4 4.5 9.8E-05 49.4 14.2 157 12-209 74-242 (335)
146 KOG3665 ZYG-1-like serine/thre 89.4 7.3 0.00016 52.4 16.8 261 12-287 306-678 (699)
147 KOG4535 HEAT and armadillo rep 89.2 0.67 1.4E-05 56.8 6.3 140 70-209 446-603 (728)
148 KOG4653 Uncharacterized conser 88.9 8.2 0.00018 51.1 15.8 187 12-210 727-919 (982)
149 KOG1248 Uncharacterized conser 88.6 13 0.00029 50.9 18.0 190 63-268 660-861 (1176)
150 KOG1967 DNA repair/transcripti 88.1 4.3 9.3E-05 53.9 12.8 210 27-257 791-1018(1030)
151 KOG2956 CLIP-associating prote 88.1 9.1 0.0002 47.7 14.8 187 11-210 285-478 (516)
152 PF11841 DUF3361: Domain of un 87.8 5.3 0.00011 43.4 11.4 128 92-222 4-142 (160)
153 KOG1077 Vesicle coat complex A 87.7 14 0.00031 47.8 16.6 238 17-289 116-381 (938)
154 PF09759 Atx10homo_assoc: Spin 87.7 1.4 3.1E-05 44.2 6.6 67 155-224 2-71 (102)
155 PF11841 DUF3361: Domain of un 87.6 4.3 9.3E-05 44.1 10.6 122 51-174 6-137 (160)
156 PF12717 Cnd1: non-SMC mitotic 87.4 12 0.00026 41.6 14.6 110 70-190 1-111 (178)
157 COG5231 VMA13 Vacuolar H+-ATPa 87.3 10 0.00022 45.1 13.8 254 159-456 169-428 (432)
158 PF12530 DUF3730: Protein of u 86.8 23 0.00049 41.3 17.0 204 57-289 1-216 (234)
159 KOG2734 Uncharacterized conser 86.2 29 0.00063 43.1 17.4 276 25-321 89-402 (536)
160 PF12719 Cnd3: Nuclear condens 85.9 18 0.00039 43.7 16.1 168 56-237 26-209 (298)
161 PF14668 RICTOR_V: Rapamycin-i 85.8 3.6 7.9E-05 38.9 7.8 67 197-276 4-70 (73)
162 PF02985 HEAT: HEAT repeat; I 85.8 1.1 2.5E-05 34.7 3.8 30 57-87 1-30 (31)
163 PF06025 DUF913: Domain of Unk 85.8 17 0.00037 45.4 16.1 193 76-288 3-208 (379)
164 PF10363 DUF2435: Protein of u 85.6 2.9 6.3E-05 41.4 7.4 84 12-108 3-86 (92)
165 PF09759 Atx10homo_assoc: Spin 85.6 1.5 3.2E-05 44.2 5.4 60 74-133 3-63 (102)
166 COG5231 VMA13 Vacuolar H+-ATPa 85.5 12 0.00026 44.5 13.2 232 16-262 152-427 (432)
167 KOG2259 Uncharacterized conser 85.1 3.4 7.3E-05 53.0 9.3 143 51-210 368-512 (823)
168 PF12755 Vac14_Fab1_bd: Vacuol 84.9 2.4 5.1E-05 42.4 6.5 90 118-208 4-95 (97)
169 KOG0915 Uncharacterized conser 84.9 1.8E+02 0.004 41.7 25.5 172 56-237 998-1184(1702)
170 KOG2032 Uncharacterized conser 84.8 9.8 0.00021 47.7 12.8 192 11-209 212-415 (533)
171 PF02985 HEAT: HEAT repeat; I 84.7 1.5 3.2E-05 34.1 3.9 29 181-209 1-29 (31)
172 KOG1991 Nuclear transport rece 84.4 1.8E+02 0.0039 40.0 25.5 220 26-264 475-712 (1010)
173 KOG2259 Uncharacterized conser 83.9 9.3 0.0002 49.2 12.3 209 15-237 237-473 (823)
174 KOG1248 Uncharacterized conser 83.6 36 0.00078 47.1 18.1 225 18-263 659-898 (1176)
175 KOG1943 Beta-tubulin folding c 83.5 25 0.00054 48.0 16.5 137 70-212 557-708 (1133)
176 PF08569 Mo25: Mo25-like; Int 83.5 32 0.00069 42.3 16.6 207 51-274 71-297 (335)
177 PF06025 DUF913: Domain of Unk 83.4 21 0.00046 44.6 15.4 122 28-149 71-206 (379)
178 KOG1020 Sister chromatid cohes 83.4 85 0.0018 44.7 21.5 185 11-208 765-959 (1692)
179 PF05918 API5: Apoptosis inhib 82.4 19 0.00041 46.8 14.6 138 9-168 20-162 (556)
180 PF14500 MMS19_N: Dos2-interac 82.3 1.2E+02 0.0025 36.2 21.4 235 107-419 6-244 (262)
181 KOG2956 CLIP-associating prote 82.0 37 0.00081 42.6 16.1 186 57-262 287-476 (516)
182 KOG1078 Vesicle coat complex C 81.9 21 0.00046 47.1 14.6 182 56-269 245-427 (865)
183 PF12530 DUF3730: Protein of u 81.9 67 0.0015 37.4 18.0 203 14-238 2-216 (234)
184 KOG1077 Vesicle coat complex A 81.3 26 0.00056 45.7 14.7 121 83-213 315-437 (938)
185 COG5098 Chromosome condensatio 79.9 5.5 0.00012 51.1 8.3 184 55-264 891-1077(1128)
186 PF04078 Rcd1: Cell differenti 78.8 25 0.00055 41.2 12.8 197 17-222 2-227 (262)
187 PF12231 Rif1_N: Rap1-interact 78.7 92 0.002 39.0 18.8 182 26-211 6-206 (372)
188 PF12031 DUF3518: Domain of un 78.4 14 0.0003 42.7 10.2 120 114-237 80-228 (257)
189 KOG1058 Vesicle coat complex C 78.1 1.6E+02 0.0034 39.4 20.2 95 156-270 376-470 (948)
190 PF11698 V-ATPase_H_C: V-ATPas 77.4 6.3 0.00014 40.8 6.6 71 180-262 43-114 (119)
191 PF11701 UNC45-central: Myosin 77.2 2.3 5E-05 46.3 3.7 140 61-206 8-156 (157)
192 PF10521 DUF2454: Protein of u 76.5 12 0.00025 45.0 9.8 136 57-193 120-278 (282)
193 KOG1967 DNA repair/transcripti 76.0 9.6 0.00021 50.9 9.2 144 13-162 868-1018(1030)
194 PF14668 RICTOR_V: Rapamycin-i 75.9 7.2 0.00016 36.9 6.0 67 155-225 3-70 (73)
195 KOG2137 Protein kinase [Signal 75.7 13 0.00029 48.7 10.3 135 52-192 385-520 (700)
196 KOG0211 Protein phosphatase 2A 75.3 2.1E+02 0.0046 39.0 21.5 238 27-289 173-411 (759)
197 PF08045 CDC14: Cell division 74.5 47 0.001 39.2 13.5 95 73-168 107-207 (257)
198 KOG0915 Uncharacterized conser 74.3 75 0.0016 45.2 17.0 321 32-436 940-1282(1702)
199 KOG4535 HEAT and armadillo rep 74.2 46 0.001 41.7 13.6 240 27-281 269-527 (728)
200 PF08569 Mo25: Mo25-like; Int 73.7 50 0.0011 40.6 14.2 204 62-290 49-268 (335)
201 KOG1993 Nuclear transport rece 73.6 33 0.00072 45.4 12.8 282 154-470 502-826 (978)
202 PF05004 IFRD: Interferon-rela 72.7 67 0.0015 39.1 15.0 181 113-296 56-248 (309)
203 KOG2999 Regulator of Rac1, req 72.3 32 0.00068 43.8 11.8 156 12-173 83-247 (713)
204 KOG0567 HEAT repeat-containing 72.2 1.5E+02 0.0032 35.1 16.3 67 50-128 61-128 (289)
205 COG5240 SEC21 Vesicle coat com 71.7 35 0.00076 43.5 12.0 56 152-209 500-555 (898)
206 KOG2734 Uncharacterized conser 71.3 1.7E+02 0.0037 36.8 17.3 218 12-235 125-371 (536)
207 KOG1789 Endocytosis protein RM 71.0 32 0.00069 46.5 11.8 118 156-288 1742-1865(2235)
208 KOG4151 Myosin assembly protei 70.9 24 0.00053 46.7 11.1 219 50-287 498-723 (748)
209 PF10363 DUF2435: Protein of u 70.5 17 0.00037 36.0 7.6 69 141-210 5-73 (92)
210 KOG2611 Neurochondrin/leucine- 70.4 2.3E+02 0.005 36.0 18.2 127 107-237 18-164 (698)
211 KOG2025 Chromosome condensatio 69.2 3.7E+02 0.008 35.9 20.3 62 14-82 128-189 (892)
212 KOG1943 Beta-tubulin folding c 68.7 2.2E+02 0.0047 39.6 19.0 209 13-237 342-594 (1133)
213 KOG3036 Protein involved in ce 68.2 31 0.00066 40.0 9.7 110 22-132 134-250 (293)
214 PF03378 CAS_CSE1: CAS/CSE pro 67.7 1.1E+02 0.0024 39.2 15.8 303 56-479 26-345 (435)
215 KOG3665 ZYG-1-like serine/thre 67.3 2.5E+02 0.0055 38.2 19.8 54 203-267 494-547 (699)
216 PF08167 RIX1: rRNA processing 66.6 25 0.00054 38.7 8.7 112 17-133 30-147 (165)
217 KOG2032 Uncharacterized conser 66.4 1E+02 0.0023 39.1 14.5 212 26-262 153-370 (533)
218 PF06371 Drf_GBD: Diaphanous G 66.2 20 0.00044 39.8 8.1 59 191-262 127-186 (187)
219 KOG2005 26S proteasome regulat 64.5 3.6E+02 0.0077 35.8 18.8 150 12-164 48-228 (878)
220 PF06685 DUF1186: Protein of u 64.0 1.4E+02 0.0031 35.2 14.5 151 55-228 30-200 (249)
221 KOG1078 Vesicle coat complex C 62.6 63 0.0014 43.0 12.2 143 55-209 390-532 (865)
222 PF01603 B56: Protein phosphat 60.8 2.1E+02 0.0045 36.4 16.5 242 12-272 133-379 (409)
223 COG5116 RPN2 26S proteasome re 59.9 70 0.0015 40.9 11.4 122 98-236 550-673 (926)
224 PLN03076 ARF guanine nucleotid 59.8 1.4E+02 0.003 44.5 16.2 202 26-235 1150-1403(1780)
225 PF08167 RIX1: rRNA processing 59.7 52 0.0011 36.2 9.7 95 373-468 58-155 (165)
226 KOG4151 Myosin assembly protei 59.1 65 0.0014 43.0 11.6 183 76-276 438-626 (748)
227 KOG1243 Protein kinase [Genera 58.7 1.5E+02 0.0033 39.3 14.6 209 30-263 185-398 (690)
228 PF12031 DUF3518: Domain of un 58.6 35 0.00075 39.6 8.0 78 28-105 139-222 (257)
229 PF13251 DUF4042: Domain of un 58.5 84 0.0018 35.3 11.0 161 29-210 2-175 (182)
230 PF12726 SEN1_N: SEN1 N termin 58.0 4.1E+02 0.0089 36.4 19.8 131 142-285 444-577 (727)
231 PF04063 DUF383: Domain of unk 57.7 24 0.00053 39.8 6.7 77 99-175 52-139 (192)
232 KOG2062 26S proteasome regulat 57.5 1.1E+02 0.0023 40.7 12.7 51 113-169 568-619 (929)
233 KOG0211 Protein phosphatase 2A 57.2 1.1E+02 0.0024 41.6 13.6 209 56-286 437-645 (759)
234 KOG0301 Phospholipase A2-activ 57.0 96 0.0021 40.7 12.3 60 26-87 557-618 (745)
235 COG5116 RPN2 26S proteasome re 55.7 1.2E+02 0.0027 38.9 12.5 152 14-190 517-672 (926)
236 smart00638 LPD_N Lipoprotein N 54.7 61 0.0013 42.9 10.9 176 9-207 354-543 (574)
237 PF01347 Vitellogenin_N: Lipop 54.3 92 0.002 41.6 12.7 174 10-206 393-586 (618)
238 PF13764 E3_UbLigase_R4: E3 ub 54.1 1.2E+02 0.0027 41.4 13.4 133 135-274 113-269 (802)
239 KOG2025 Chromosome condensatio 54.1 1.1E+02 0.0023 40.6 12.0 94 177-289 82-176 (892)
240 PF08045 CDC14: Cell division 54.0 1E+02 0.0023 36.4 11.2 181 14-237 5-188 (257)
241 KOG2933 Uncharacterized conser 53.8 54 0.0012 39.3 8.8 166 11-189 87-257 (334)
242 PF14500 MMS19_N: Dos2-interac 53.7 2.9E+02 0.0062 32.9 15.1 182 19-211 6-239 (262)
243 KOG1820 Microtubule-associated 53.0 3.3E+02 0.0072 37.5 17.1 183 59-263 256-443 (815)
244 PF04821 TIMELESS: Timeless pr 52.9 1.2E+02 0.0027 36.0 12.0 161 57-237 14-190 (266)
245 PF14225 MOR2-PAG1_C: Cell mor 52.9 3.5E+02 0.0075 32.3 15.5 216 18-265 13-256 (262)
246 PF04063 DUF383: Domain of unk 52.9 1.1E+02 0.0023 34.7 10.8 83 194-290 72-161 (192)
247 cd03568 VHS_STAM VHS domain fa 52.7 51 0.0011 35.5 7.9 90 162-262 20-109 (144)
248 PF11865 DUF3385: Domain of un 52.6 70 0.0015 35.1 9.1 112 15-128 13-156 (160)
249 KOG2611 Neurochondrin/leucine- 52.3 5.2E+02 0.011 33.0 16.8 186 16-208 15-224 (698)
250 KOG2062 26S proteasome regulat 50.1 82 0.0018 41.7 10.1 92 102-205 521-614 (929)
251 smart00638 LPD_N Lipoprotein N 49.9 2.2E+02 0.0047 37.8 14.9 143 57-220 358-517 (574)
252 PF01347 Vitellogenin_N: Lipop 49.5 1.6E+02 0.0034 39.4 13.7 117 140-262 396-518 (618)
253 PF11701 UNC45-central: Myosin 49.4 26 0.00056 38.3 5.2 113 12-127 42-157 (157)
254 COG5209 RCD1 Uncharacterized p 48.1 4.1E+02 0.009 30.7 13.9 181 26-209 60-268 (315)
255 KOG0392 SNF2 family DNA-depend 47.4 1.4E+02 0.003 42.0 12.0 114 139-263 208-325 (1549)
256 KOG1992 Nuclear export recepto 47.3 9.3E+02 0.02 33.0 18.9 373 32-482 334-735 (960)
257 cd03569 VHS_Hrs_Vps27p VHS dom 47.1 1E+02 0.0022 33.1 9.1 111 12-130 3-115 (142)
258 KOG1243 Protein kinase [Genera 47.0 85 0.0019 41.5 9.8 150 51-209 288-437 (690)
259 PF09324 DUF1981: Domain of un 46.8 1E+02 0.0022 30.2 8.2 70 379-453 14-85 (86)
260 PF13251 DUF4042: Domain of un 46.4 1.4E+02 0.003 33.6 10.3 117 11-130 38-175 (182)
261 PF10521 DUF2454: Protein of u 46.4 73 0.0016 38.2 8.8 35 140-174 120-154 (282)
262 KOG0567 HEAT repeat-containing 46.3 78 0.0017 37.3 8.4 95 14-132 156-252 (289)
263 PF04078 Rcd1: Cell differenti 46.0 1.3E+02 0.0028 35.6 10.2 103 27-132 110-221 (262)
264 PF04388 Hamartin: Hamartin pr 44.8 1.6E+02 0.0035 39.8 12.4 63 248-323 82-144 (668)
265 PF12830 Nipped-B_C: Sister ch 43.4 1.2E+02 0.0026 34.1 9.4 73 13-93 9-81 (187)
266 PF14225 MOR2-PAG1_C: Cell mor 42.3 4.9E+02 0.011 31.0 14.6 166 14-193 65-241 (262)
267 KOG2999 Regulator of Rac1, req 41.4 2.5E+02 0.0054 36.3 12.1 160 101-274 85-254 (713)
268 cd03569 VHS_Hrs_Vps27p VHS dom 40.4 1E+02 0.0022 33.1 7.9 76 177-262 38-113 (142)
269 COG5110 RPN1 26S proteasome re 40.1 8.2E+02 0.018 31.8 16.1 150 11-163 46-229 (881)
270 PF11864 DUF3384: Domain of un 39.1 9.8E+02 0.021 30.9 31.9 113 27-149 4-117 (464)
271 smart00288 VHS Domain present 38.0 1.2E+02 0.0026 32.1 7.9 77 177-262 34-110 (133)
272 PF07923 N1221: N1221-like pro 37.4 4.5E+02 0.0098 31.7 13.7 71 52-149 56-126 (293)
273 COG5098 Chromosome condensatio 36.2 91 0.002 40.8 7.5 145 11-169 890-1038(1128)
274 PRK14707 hypothetical protein; 35.4 2E+03 0.043 33.5 27.9 204 11-221 119-328 (2710)
275 PF00790 VHS: VHS domain; Int 34.2 1.8E+02 0.0038 31.1 8.5 112 11-130 3-119 (140)
276 KOG2933 Uncharacterized conser 33.8 1.1E+02 0.0023 37.0 7.1 143 57-210 89-235 (334)
277 KOG0170 E3 ubiquitin protein l 33.1 19 0.00041 45.2 1.0 64 1211-1274 128-191 (621)
278 cd03567 VHS_GGA VHS domain fam 32.5 1.4E+02 0.003 32.0 7.3 95 162-262 21-115 (139)
279 PF00790 VHS: VHS domain; Int 32.5 76 0.0017 33.9 5.4 76 177-262 39-117 (140)
280 KOG1020 Sister chromatid cohes 32.2 2.4E+02 0.0051 40.7 10.8 124 140-288 817-940 (1692)
281 PF08767 CRM1_C: CRM1 C termin 32.1 6.1E+02 0.013 31.1 13.7 60 178-237 163-226 (319)
282 KOG4653 Uncharacterized conser 32.0 8.5E+02 0.018 33.5 15.2 59 111-169 738-798 (982)
283 PF12397 U3snoRNP10: U3 small 30.5 1.2E+02 0.0027 31.3 6.4 70 56-131 6-76 (121)
284 PF08713 DNA_alkylation: DNA a 30.4 2.8E+02 0.0062 31.3 10.0 143 58-224 53-196 (213)
285 PF11081 DUF2890: Protein of u 30.1 98 0.0021 34.7 5.7 55 371-425 116-175 (187)
286 PF14726 RTTN_N: Rotatin, an a 29.8 2.4E+02 0.0052 28.5 7.9 96 28-126 2-97 (98)
287 PF12074 DUF3554: Domain of un 29.2 8.1E+02 0.018 30.0 14.4 214 54-288 20-256 (339)
288 PF14631 FancD2: Fanconi anaem 29.2 5E+02 0.011 38.4 13.9 150 55-209 430-583 (1426)
289 cd03568 VHS_STAM VHS domain fa 29.1 1.7E+02 0.0036 31.6 7.2 69 99-168 37-110 (144)
290 PF08324 PUL: PUL domain; Int 28.0 2.3E+02 0.005 33.4 9.1 119 112-233 122-252 (268)
291 PF04388 Hamartin: Hamartin pr 27.0 9.4E+02 0.02 32.7 15.2 136 100-263 5-140 (668)
292 COG5656 SXM1 Importin, protein 26.9 6.4E+02 0.014 34.1 12.7 168 57-237 372-551 (970)
293 KOG0414 Chromosome condensatio 26.6 3.4E+02 0.0073 38.3 10.7 136 11-160 917-1056(1251)
294 PF12830 Nipped-B_C: Sister ch 26.5 5.1E+02 0.011 29.1 10.9 129 141-287 10-141 (187)
295 PF10350 DUF2428: Putative dea 26.5 4.8E+02 0.01 30.8 11.2 65 94-170 161-228 (255)
296 PF08506 Cse1: Cse1; InterPro 25.7 1.4E+02 0.0031 37.3 6.9 124 73-204 227-370 (370)
297 PF11229 DUF3028: Protein of u 25.7 1.1E+03 0.024 30.7 14.0 249 18-286 48-330 (589)
298 cd03561 VHS VHS domain family; 24.8 3.3E+02 0.0072 28.8 8.5 78 177-263 34-112 (133)
299 PF14764 SPG48: AP-5 complex s 24.6 5.4E+02 0.012 33.1 11.5 121 150-272 279-405 (459)
300 PF10274 ParcG: Parkin co-regu 24.1 2.2E+02 0.0048 32.0 7.2 53 158-210 57-110 (183)
301 KOG2073 SAP family cell cycle 24.0 1.1E+03 0.023 32.9 14.7 213 57-283 191-427 (838)
302 cd08050 TAF6 TATA Binding Prot 24.0 8.3E+02 0.018 30.3 13.0 100 152-262 230-339 (343)
303 KOG4524 Uncharacterized conser 23.6 2.7E+02 0.0059 38.3 8.9 105 174-288 797-901 (1014)
304 PF08454 RIH_assoc: RyR and IP 23.2 2.3E+02 0.0049 29.2 6.6 90 192-287 5-107 (109)
305 PF07814 WAPL: Wings apart-lik 23.2 9.8E+02 0.021 29.8 13.6 91 58-149 23-116 (361)
306 cd03567 VHS_GGA VHS domain fam 23.1 1.3E+02 0.0028 32.3 5.0 44 437-480 48-91 (139)
307 KOG2199 Signal transducing ada 23.0 2.4E+02 0.0051 35.0 7.5 73 160-235 26-98 (462)
308 KOG0803 Predicted E3 ubiquitin 22.8 8.5E+02 0.018 35.6 13.9 114 10-128 39-152 (1312)
309 PF11707 Npa1: Ribosome 60S bi 22.7 1.5E+03 0.032 27.8 19.0 151 58-210 58-238 (330)
310 PRK14707 hypothetical protein; 22.6 3.1E+03 0.068 31.7 28.9 383 14-480 375-762 (2710)
311 KOG2213 Apoptosis inhibitor 5/ 22.2 1.4E+03 0.031 28.7 13.7 45 140-190 62-106 (460)
312 PF04869 Uso1_p115_head: Uso1 22.0 2.5E+02 0.0054 34.4 7.8 170 55-237 33-211 (312)
313 KOG1949 Uncharacterized conser 21.8 6.9E+02 0.015 33.5 11.6 183 59-262 177-369 (1005)
314 PF08389 Xpo1: Exportin 1-like 21.7 3.9E+02 0.0084 27.9 8.5 49 153-204 100-148 (148)
315 PF04821 TIMELESS: Timeless pr 21.5 8.8E+02 0.019 28.9 12.1 59 13-86 14-72 (266)
316 PF08324 PUL: PUL domain; Int 21.4 1.8E+02 0.004 34.3 6.5 99 69-168 122-231 (268)
317 cd03561 VHS VHS domain family; 21.2 2.4E+02 0.0052 29.8 6.6 78 10-89 35-115 (133)
318 KOG4464 Signaling protein RIC- 21.2 1.5E+03 0.032 28.8 13.6 138 114-287 60-198 (532)
319 KOG2038 CAATT-binding transcri 21.1 2.2E+03 0.047 29.5 15.8 240 14-275 232-538 (988)
320 PF06012 DUF908: Domain of Unk 20.9 3E+02 0.0066 33.8 8.3 70 194-270 233-304 (329)
321 PF12726 SEN1_N: SEN1 N termin 20.2 5.1E+02 0.011 35.6 11.1 143 13-168 442-585 (727)
322 KOG1566 Conserved protein Mo25 20.1 1.7E+03 0.036 27.4 17.9 221 28-290 35-271 (342)
323 PF12231 Rif1_N: Rap1-interact 20.0 1.8E+03 0.038 27.7 18.2 161 52-215 125-309 (372)
324 PF10835 DUF2573: Protein of u 20.0 2.5E+02 0.0053 27.0 5.4 62 54-128 8-70 (82)
No 1
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-141 Score=1218.54 Aligned_cols=618 Identities=55% Similarity=0.864 Sum_probs=536.4
Q ss_pred eEEEEECCeecCCCccHHHHHHHHhhcccccccccCCCCccCCCCCCCcccceEEEEEeCCCccccccCCCCCCCCCCCC
Q 000286 1045 KLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKS 1124 (1720)
Q Consensus 1045 ~l~f~~~~~~l~~~~Ti~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ti~y~~~~~~~~~~~~~~~~~~~~~~~ 1124 (1720)
+|.|++.|+.+++++|+||||+|+....+++ ..++ +. .... |+.+|+|+|++-+.......+++.+...+..+
T Consensus 1 ~l~f~~~g~~l~~~~t~yqav~~~~~~~e~e----~~s~-s~-~~~~-~~~t~~~~~~~~d~~~n~~~vg~~s~~~~~~~ 73 (621)
T KOG0170|consen 1 RLQFYIGGHLLPRNLTVYQAVRQFSIQAEDE----DESN-PL-GRGG-WNKTYTIWYQREDSESNKDCVGGKRGRAQTAP 73 (621)
T ss_pred CceEEeccccccccchHHHHHHHHhhhcccc----ccCC-cc-ccCc-chhhhhhhhhccchhhhhcccccccccccCCc
Confidence 4789999999999999999999998876643 1122 21 2233 99999999997654433333333221112222
Q ss_pred CCCCCCCCCCC-ccccccchhhhhccCCCCCCccCCCChHHHHHHHHHHHHhhhhchhhhhcccccccccCccccccccc
Q 000286 1125 SKSGSASNSNS-DSASRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELS 1203 (1720)
Q Consensus 1125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1203 (1720)
.+..... .+. ..+|..+.+...+. ..+..++.++++.|+|+ ....+|. .++++.
T Consensus 74 ~~~~~~n-~~~~~~~h~~~~~~~~~~-----~~e~~~~~~~~i~l~rv--~~~~~~~-----------------~l~d~~ 128 (621)
T KOG0170|consen 74 TKTSPTN-KKHDELSHDPSVSNPLLV-----PLENINPSLDVILLLRV--AIEGYWY-----------------YLDDLA 128 (621)
T ss_pred ccccCcC-CchhhccCChhhcccccc-----chhhcCchHHHHHHHhh--cccchhh-----------------hhhhhh
Confidence 2221111 111 22232222211111 23334577888888888 2333332 234444
Q ss_pred CCCCCCCchhhhcccchHHHHHHHhHHHHHhcCCCchHHHHhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhccCC
Q 000286 1204 GTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGAD 1283 (1720)
Q Consensus 1204 ~~~~~~~~~~f~~~klt~kl~rql~~~l~~~s~~lp~w~~~l~~~~pFlfpfe~R~~~f~~~~fg~~r~l~~~~~~~~~~ 1283 (1720)
.....+|.++|+|+|||+|++||++||+++|+|.+|.||..|++.|||||||+||+.|||+|+||++|++++||+.++.+
T Consensus 129 ~~~~~vp~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~~taFg~~R~~~~~k~~s~~~ 208 (621)
T KOG0170|consen 129 MCKEIVPTSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFYSTAFGLSRAIQLLKNKSKGS 208 (621)
T ss_pred hhhcCCChHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHHHHHhhhhhHHHHHhhcccCC
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999988767
Q ss_pred CCCCCcchhhhcCccceeEEEEcCchHHHHHHHHHhhccCCCceEEEEEcCccccCCcchHHHHHHHHHHHhccCCCCcc
Q 000286 1284 GHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWR 1363 (1720)
Q Consensus 1284 ~~~~~~~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~~~~~~~L~V~F~gE~G~g~GptrEFf~lvs~El~~~~l~lf~ 1363 (1720)
.+.+.++...++|||+|+|++|+|++||++|+++|++|++++.+|||||++|+|+|+|||+|||++|++|||++++||||
T Consensus 209 ~~~s~~e~~~~~grL~RkK~risR~~Il~sa~kvm~~ygss~~vLEIEY~~EvGTGLGPTLEFYtlVSk~fq~~sLgmWR 288 (621)
T KOG0170|consen 209 KDGSNDEALQQLGRLTRKKLRISRKTILASALKVMEKYGSSKAVLEIEYEEEVGTGLGPTLEFYTLVSKEFQRASLGMWR 288 (621)
T ss_pred CCCCchHHhHhhcccchhhhhhhHHHHHHHHHHHHHHhcCCcceEEEEeccccccCCCcceeeHHHHHHHHhhccccccc
Confidence 76666777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCccccc
Q 000286 1364 SNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLP 1443 (1720)
Q Consensus 1364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ldl~ 1443 (1720)
++.-+ +.. +++ ..+..||..+.||||.||++..+.++ ..+++++|++||+||||||+|+|++|+|
T Consensus 289 ~~s~s----~~~-------~k~-~~~t~~v~~~sgLFp~P~~~ts~~se---~~kvi~~F~~LG~~vAkal~D~Rildlp 353 (621)
T KOG0170|consen 289 CNSVS----YRS-------GKP-QENTKDVYITSGLFPRPWPPTSNSSE---NEKVIELFRLLGTFVAKALQDGRILDLP 353 (621)
T ss_pred cCcee----ecc-------CCC-CCCcchhhhccccCCCCCCCCCCchh---HHHHHHHHHHHHHHHHHHHhcCceEeee
Confidence 97541 111 122 45678999999999999999766555 3689999999999999999999999999
Q ss_pred CCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCcccccccccccCCCCcee
Q 000286 1444 FSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI 1523 (1720)
Q Consensus 1444 fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedl~L~Ft~~g~~~~e 1523 (1720)
|+++|||+++|++++..|+..|||+++++|.+|+..+.+|+.++...|+...+..++++.||.||||||+||+||+++||
T Consensus 354 ls~~Fykl~l~q~Lt~~dv~~vd~~l~~sL~~Le~vv~~k~~~~~~~~d~~~a~~dltl~g~~iEdL~LdFTLPG~p~ie 433 (621)
T KOG0170|consen 354 LSKAFYKLILGQELTSHDVTTVDPELAKSLLELELVVPRKKKLEKYIGDVANADDDLTLNGCSIEDLSLDFTLPGFPDIE 433 (621)
T ss_pred ccHHHHHHHhcCCcccccceecCHHHHHHHHHHHHHhhhhhhhhhhcccccccccceeecCcchhhceeeEecCCCCCee
Confidence 99999999999999999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred ccCCCc--ccCcccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhheE
Q 000286 1524 LKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIK 1601 (1720)
Q Consensus 1524 L~pgG~--~VT~~N~~eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~ 1601 (1720)
|+|||. +||..|++|||+.|++|++++||.+|++|||.||++|||++.|++|+|+||+.|+||.+++|+.++|++|++
T Consensus 434 L~p~g~~~~V~~~NleEYi~~VId~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~ 513 (621)
T KOG0170|consen 434 LIPGGANKPVTISNLEEYIHGVIDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIK 513 (621)
T ss_pred eccCCCCCccccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcc
Confidence 999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCC
Q 000286 1602 FDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDL 1681 (1720)
Q Consensus 1602 ~~~Gyt~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~L 1681 (1720)
+|||||++||+|+.|++|+++|+.+|||.||||||||||||+|||++|+||||||||+.+. ++.+|++|
T Consensus 514 ~DHGYT~~Sp~i~~li~ils~f~~~qQR~FLQFvTGSprLPiGGfasLNPklTIVrKh~e~-----------~~t~Dd~L 582 (621)
T KOG0170|consen 514 ADHGYTMDSPIIHDLISILSAFDKEQQRLFLQFVTGSPRLPIGGFASLNPKLTIVRKHAED-----------SETPDDYL 582 (621)
T ss_pred cccCccCCCcHHHHHHHHhhhhchHHHHHHHHHhcCCCCCCCCcccccCCCeEEEeccCCC-----------CCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999876 58899999
Q ss_pred ceeecccCccccCCCCCHHHHHHHHHHHHHcCCccccCC
Q 000286 1682 PSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720 (1720)
Q Consensus 1682 Psa~TC~n~LkLP~YsS~eilreKL~~AI~eg~g~F~LS 1720 (1720)
|+||||+||||||+|||+|+||+||.+||+||||+||||
T Consensus 583 PSVMTCaNYLKLP~YSSkEiM~~kL~~Ai~EGqgSFhLS 621 (621)
T KOG0170|consen 583 PSVMTCANYLKLPPYSSKEIMRSKLLYAIEEGQGSFHLS 621 (621)
T ss_pred chHHHHHhhhcCCCCchHHHHHHHHHHHHHccccccccC
Confidence 999999999999999999999999999999999999998
No 2
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-97 Score=894.28 Aligned_cols=743 Identities=47% Similarity=0.632 Sum_probs=593.3
Q ss_pred cccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC
Q 000286 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL 88 (1720)
Q Consensus 9 ~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~ 88 (1720)
+.++++++|+++|+...||++|++|+.+||++|+|+|++.+..|+...+||.||.||++++|++||+.||||||||+++.
T Consensus 164 sasSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl 243 (1051)
T KOG0168|consen 164 SASSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL 243 (1051)
T ss_pred cchHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc
Confidence 33559999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhcc
Q 000286 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 89 p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1720)
|+.+..||++++||+|++||+.|+|+||+||+|+||++||++|+.+|+++|+|.++|+|||||++++||.|+.+++|||.
T Consensus 244 P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 244 PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCCh
Q 000286 169 KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248 (1720)
Q Consensus 169 ~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~ 248 (1720)
+.+.+.|..+.+++|.|..+|++.|.++++.+|.|+++|+++|.|.+++++.++.+|+|.++++||... ++.++.
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt-----~t~Ls~ 398 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT-----PTILSN 398 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC-----cccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999876 677899
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCC-CCC
Q 000286 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQG-TIS 327 (1720)
Q Consensus 249 ~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~-~~s 327 (1720)
.+++.++++|..+|++++-....+++.||..+|..+|.++.+.++.+....+.+.++++++++.||.+|||+++.+ +|.
T Consensus 399 ~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~ 478 (1051)
T KOG0168|consen 399 GTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFA 478 (1051)
T ss_pred cchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceee
Confidence 9999999999999999999999999999999999999999998888888889999999999999999999999984 443
Q ss_pred CCcc---------cc--cccc---CCc------------ccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHH
Q 000286 328 LPSS---------SN--MFVK---GPV------------VRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGM 381 (1720)
Q Consensus 328 ~~~~---------~~--~~~~---g~~------------~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~ 381 (1720)
+... +. |.++ |.. ++.+..+.++++. .+...++|+.+++++||++++|++
T Consensus 479 ~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~----dkl~~~~r~~~l~nqpel~q~F~~ 554 (1051)
T KOG0168|consen 479 VDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQ----DKLNGSAREGLLKNQPELLQSFGK 554 (1051)
T ss_pred hhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhh----hhcCCchhhhhhhcCHHHHHHHHH
Confidence 3110 11 1121 211 1111111121111 112237899999999999999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHHhhCchh
Q 000286 382 DLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGT 461 (1720)
Q Consensus 382 ~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll~K~pd~ 461 (1720)
.|||+||+||++++++.||||||+||+|||||+++++|++++++.+++||||+||+++|+.+|++|||++++||+|+||+
T Consensus 555 ~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~ 634 (1051)
T KOG0168|consen 555 DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT 634 (1051)
T ss_pred HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhhcHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCcccCCCCCCCCCCC-CC
Q 000286 462 FSKMFVREGVVHAVDQLILAGNTNTVPSQASSADKDNDSIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSP-PS 540 (1720)
Q Consensus 462 f~~~f~REGV~~~I~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~d~~~~~~s~~~~~~-~~ 540 (1720)
|.++|+||||||+|++|+...+.....+ ++++. ..++.....+.++++..+-+....++. +.+ ..
T Consensus 635 F~~~F~REGV~~~v~~L~~~~~~~~~~p-----dk~~n-~~gS~~s~~~~~~ss~~~~~~~~see~--------~~pslt 700 (1051)
T KOG0168|consen 635 FSPSFRREGVFHAVKQLSVDSNPIDANP-----DKANN-ENGSADSEEGDSSSSITECDEHQSEEL--------GYPSLT 700 (1051)
T ss_pred hhhhHhhhhHHHHHHHHhccCCccccCC-----CcccC-CCCccccCCCccccccccccccchhcc--------CCcccc
Confidence 9999999999999999998654332211 11111 111111122222222111111001111 111 11
Q ss_pred CcccCCCcch-------hhHHHHHHHHHHHHhhCCCCCCCcccchhhHHHHHHHHHHHHhhccccchhcccCCccccCCc
Q 000286 541 SVEIPTVNSN-------LRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSKASGSR 613 (1720)
Q Consensus 541 ~~~~p~~~~~-------~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 613 (1720)
+...|....+ +|..+..+||.|..+||++.. +.+.++.+..++++...+..+....+.+.+|+.
T Consensus 701 ~~~~~~s~~~pk~s~~l~R~~~~~~ak~~~p~~~p~~~---~~~~~d~~~~~knl~s~~s~~l~~~np~~~gk~------ 771 (1051)
T KOG0168|consen 701 HSEQPDSVKPPKISDHLLRTRSPKRAKNFGPKYFPSRL---DQGVTDQLANLKNLHSILSSFLASLNPATWGKT------ 771 (1051)
T ss_pred cccCCCccCCchhHHHHHHhhhhhhhhccCCCCCCchh---hhhhhHhhhhhhhhcchhhhhhcccCCCCCCcc------
Confidence 1222222222 233344556677778888733 456788899999999888776655554444432
Q ss_pred ccccchhhHH--HHHHHHHHHHHhhcCCCccccccccccchHHHHHHhhccCcchh--hhhHHHHHHHHHHHHHHHHHHh
Q 000286 614 LADISATKEE--YLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKER--MSEANMLKLRQQALKRFKSFIA 689 (1720)
Q Consensus 614 ~~~~~~~~ee--~~~~~l~~l~~~l~~~~~iSsFEl~~SGlv~~Ll~~Ls~~~~~~--~~~~~~~~~~~~~~~~f~~f~~ 689 (1720)
++ .|.++|+.+.+.+.+++.||+|||.++|++++|.+|++++.+.+ ..+.......++.++.|+.|.+
T Consensus 772 --------e~~~f~g~~~s~~~~~l~g~~~vS~~~l~~~~~~~sisnr~s~~~~sre~~~k~~~~~~e~e~~r~l~vl~~ 843 (1051)
T KOG0168|consen 772 --------EEQPFWGNIWSVLKERLAGDFDVSGFELTEAGVADSISNRESSGTWSREQAAKLVLRYFEQEILRFLNVLQE 843 (1051)
T ss_pred --------cccccccchhhhhhhhhcCCcccchhhhhHHHHHHHHHhhhhcchhhHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 22 38899999999999999999999999999999999999887533 2222223344555555566666
Q ss_pred hccCCCCCCCCCChHHHHHHHHHHHhhcccccceEeccCCCCCCCCCCCCcccccccC-ceEEE-EeecCCCCCcCCCCC
Q 000286 690 VALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHSARSSTGSARLSSGLSALSQ-PFKLR-LCRAQGDKSLRDYSS 767 (1720)
Q Consensus 690 ~~~~~~~~~~~~~pl~~LV~kLq~aLsr~E~FpV~~s~~~~~~~~~~~~~~~~s~L~k-qlKlr-L~~~~d~~~l~~~~~ 767 (1720)
++..-....+...+...++.|||++|+.+|+||++++|++..-++....++|...++. .+|+| +-.......+.+|.-
T Consensus 844 v~t~l~~~ng~v~~~~~~i~~lqssLs~~e~~p~vlsh~~~~kn~~~~lsSg~t~~s~~~i~~~~fl~~f~~~ple~~~~ 923 (1051)
T KOG0168|consen 844 VLTRLLWLNGSVVDCGLLIQKLQSSLSSLEKFPFVLSHSGSKKNILAYLSSGETILSVPCIRLRTFLHVFLRLPLEPMLQ 923 (1051)
T ss_pred HHHHHHhhcCccCcHHHHHHHHHHHHHhhhcCceEecCchhhhhhhhhcccCcchhhhHHHHHHHHHHHHhcCCchhhcc
Confidence 5543322334556799999999999999999999999976544444456666555533 34433 111122345567777
Q ss_pred CeEEEccccCHHHHHHhhhhhhcc
Q 000286 768 NVVLIDPLASLAAVEEFLWPRVQR 791 (1720)
Q Consensus 768 ~~VsI~~iAt~~ale~yL~~Rv~~ 791 (1720)
..|.|.|++...+..+|.|+.+..
T Consensus 924 ~~~~v~~l~~~~~~a~~~~~~~cl 947 (1051)
T KOG0168|consen 924 PNVQVPPLTSSPAEADVEKENNCL 947 (1051)
T ss_pred ccccCCCccccchhhhhhcccCCc
Confidence 888888888888888888877764
No 3
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-75 Score=746.50 Aligned_cols=432 Identities=31% Similarity=0.446 Sum_probs=361.3
Q ss_pred hhhcccchHHHHHHHhHHHHHhcCCCchHHHHhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhccCCCCC-CC---
Q 000286 1213 EFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHG-SV--- 1288 (1720)
Q Consensus 1213 ~f~~~klt~kl~rql~~~l~~~s~~lp~w~~~l~~~~pFlfpfe~R~~~f~~~~fg~~r~l~~~~~~~~~~~~~-~~--- 1288 (1720)
.++......++.++.-+++.+++.+.+.|. ....|+++++++|...++...|...|...-+..... -+.. ..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~r~~~~~~~~~~~h~k~~~~~~~~~-~g~~~~~~~~ 487 (872)
T COG5021 412 STYEDLRREQLGRESDESFYVASNVQQQRA---SREGPLLSGWKTRLNNLYRFYFVEHRKKTLTKNDSR-LGSFISLNKL 487 (872)
T ss_pred hhhhchhhhhhhhhhccchhhhcccccccc---cccccccchHHHHhhhhheeeehhcccceeeecCCC-Cchhhhhchh
Confidence 455556677888889999999999999998 677999999999999999888776654332211110 0000 00
Q ss_pred -------cc-hhh-----hc--CccceeEEEEcCchHHHHHHHHHhhccC--CCceEEEEEcCccccCC-cchHHHHHHH
Q 000286 1289 -------NE-REI-----RV--GRLERQKVRVSRNRILDSAAKVMEMYSS--QKAVLEVEYFGEVGTGL-GPTLEFYTLL 1350 (1720)
Q Consensus 1289 -------~~-~~~-----~~--~rl~r~kv~V~R~~il~~a~~~l~~~~~--~~~~L~V~F~gE~G~g~-GptrEFf~lv 1350 (1720)
+. +.+ +. .--+..+++|+|+++++|++..+...+. .+..|+|+|.||+|+|+ |.|||||.++
T Consensus 488 ~~~r~~~~~r~~l~~~~~~~~~~~~~~l~I~VrRd~vf~Dsy~~i~~~~~~~~k~~L~i~F~~EeGiD~GGltrE~~~lL 567 (872)
T COG5021 488 DIRRIKEDKRRKLFYSLKQKAKIFDPYLHIKVRRDRVFEDSYREIMDESGDDLKKTLEIEFVGEEGIDAGGLTREWLFLL 567 (872)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCcceEEEEecccchHHHHHHHHHhchhhhcceEEEEecCcccccCCccchHHHHHH
Confidence 00 000 00 1124678999999999999998876663 35679999999999998 7899999999
Q ss_pred HHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCChhhHHHHHHHcccce
Q 000286 1351 SRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVM 1430 (1720)
Q Consensus 1351 s~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~li 1430 (1720)
++++++|++++|..... +.| .++|+|.+.. + ++++++|+|+|++|
T Consensus 568 s~~~Fnp~y~LF~y~t~----------------------d~~-----~~~~n~~s~~-----n---pe~L~yf~fiGrvI 612 (872)
T COG5021 568 SKEMFNPDYGLFEYITE----------------------DLY-----TLPINPLSSI-----N---PEHLSYFKFLGRVI 612 (872)
T ss_pred hHHhcCCcccceeeecc----------------------ccc-----ccCcCccccC-----C---HHHHHHHHHHHHHH
Confidence 99999999999988754 122 3556665441 1 58999999999999
Q ss_pred eeheecCCcccccCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCccccc
Q 000286 1431 AKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDL 1510 (1720)
Q Consensus 1431 g~Al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedl 1510 (1720)
|+||+|++.||++|+.+|||+||+.+++++|++++||++|++|.||+++ +.+. ..+
T Consensus 613 GkaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~-----------------------~~d~-~~l 668 (872)
T COG5021 613 GKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNN-----------------------DIDE-TIL 668 (872)
T ss_pred HHHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcC-----------------------CCCc-cee
Confidence 9999999999999999999999999999999999999999999999884 1111 146
Q ss_pred ccccccC----C-CCceeccCCCc--ccCcccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhh
Q 000286 1511 CLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHL 1583 (1720)
Q Consensus 1511 ~L~Ft~~----g-~~~~eL~pgG~--~VT~~N~~eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~l 1583 (1720)
+++|++. | ...|||||||+ +||.+|+++||++|++|+|+++|++|++||..||++|||..+|.+|++.||+.|
T Consensus 669 ~l~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~L 748 (872)
T COG5021 669 DLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELL 748 (872)
T ss_pred eeeEEEeecccCceeEEEeccCCccccccchHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHH
Confidence 7777764 3 45799999999 999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHhhhheEecCCCCCCChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCC
Q 000286 1584 LCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTA 1663 (1720)
Q Consensus 1584 icG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~ 1663 (1720)
|||.++++|+++|+++|.| |||++++|+|.|||++|++|+.++|++|||||||++|+|++||+.|+|+.+|++.....+
T Consensus 749 I~G~~e~iDidd~K~~T~Y-~GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~~~~kf~I~~~ 827 (872)
T COG5021 749 IGGIPEDIDIDDWKSNTAY-HGYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGVRKFTIEKG 827 (872)
T ss_pred HCCCCccccHHHHhhcccc-cccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCcccceeeeecC
Confidence 9999986699999999999 799999999999999999999999999999999999999999999999544444332221
Q ss_pred CCCCCCCCCCCCCCCCCCceeecccCccccCCCCCHHHHHHHHHHHHHcCCccccCC
Q 000286 1664 PNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720 (1720)
Q Consensus 1664 ~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL~~AI~eg~g~F~LS 1720 (1720)
..++++||+||||||+|+||+|+|||+||+||++||+||.| |+|+
T Consensus 828 -----------g~~~~rLP~ahTCFN~L~LP~YsSke~Lr~kL~~AI~Eg~G-Fg~~ 872 (872)
T COG5021 828 -----------GTDDDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTAINEGAG-FGLL 872 (872)
T ss_pred -----------CCccccCCchhhhhhhccCCCCCCHHHHHHHHHHHHHhccC-cCcC
Confidence 23688999999999999999999999999999999999997 8874
No 4
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-74 Score=698.78 Aligned_cols=418 Identities=33% Similarity=0.542 Sum_probs=352.2
Q ss_pred CCCCchhhhcccchHHHHHHHhHHHHHh-cCCCchHHHHhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhccCCCC
Q 000286 1207 VRVPYEEFINSKLTPKLARQIQDALALC-SGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGH 1285 (1720)
Q Consensus 1207 ~~~~~~~f~~~klt~kl~rql~~~l~~~-s~~lp~w~~~l~~~~pFlfpfe~R~~~f~~~~fg~~r~l~~~~~~~~~~~~ 1285 (1720)
..||.+.|++..|+.-++-+.+-..... ......|| +|||||+--+|..++|.++ ++++...+..+
T Consensus 419 ~lip~e~FY~~~l~~~id~~~dy~~w~~~~~~~fsfc-----~ypFIL~~~aK~~lL~yD~--------rlrM~~~~~~a 485 (850)
T KOG0941|consen 419 GLIPYEEFYNEELNDRIDMKEDYVHWRTKQMNCFSFC-----NYPFILNAVAKIELLQYDA--------RLRMESERRKA 485 (850)
T ss_pred CCCCHHHhhhHHHHhHHHHHHHHHHHHHHhcccceee-----cCCeecccHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 4689999999888888875444332221 22256777 8999999999999999764 23332211100
Q ss_pred CCCc-chhhhcCccceeEEEEcCchHHHHHHHHHhhcc--CCCceEEEEEcCccccCC-cchHHHHHHHHHHHhccCCCC
Q 000286 1286 GSVN-EREIRVGRLERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAM 1361 (1720)
Q Consensus 1286 ~~~~-~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~~--~~~~~L~V~F~gE~G~g~-GptrEFf~lvs~El~~~~l~l 1361 (1720)
.-.. ....+-..-++.+++|+|++|++||+++|+.+. +.+++|+|+|.||+|.|+ |+++|||.++.+|+++|++||
T Consensus 486 ~~~s~~~~~~~~~~p~l~l~VrR~~lv~Dsl~~l~~~~~~Dl~K~L~V~F~gE~g~DaGGv~kEfF~ll~~ei~~p~~Gm 565 (850)
T KOG0941|consen 486 FLSSLFQGLQLLVSPYLKLTVRRDHLVEDALRQLSMISMSDLKKQLKVEFVGEEGVDAGGVRKEFFQLLVEEIFNPEYGM 565 (850)
T ss_pred HHHHHHhhccCCCCCcEEEEEehhhhHHHHHHHHHhhhhhhhhcceEEEECCCcccccCchHHHHHHHHHHHHcCccccC
Confidence 0000 000000023689999999999999999999887 469999999999999999 689999999999999999999
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCccc
Q 000286 1362 WRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLD 1441 (1720)
Q Consensus 1362 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ld 1441 (1720)
|.+++. ..++ +|+. .+. ....+|+++|++||.|||++.++|
T Consensus 566 F~~~e~----------------------s~~~-----WF~~-~~~-----------~~~~~y~liGil~GLAIyN~~ild 606 (850)
T KOG0941|consen 566 FTYDEE----------------------SSLL-----WFNP-SPF-----------EEEKQYHLIGILCGLAIYNNTILD 606 (850)
T ss_pred eecccc----------------------ccee-----eecC-CCC-----------CccceeeehhHHHHHHHhccceec
Confidence 999865 2333 3421 111 123489999999999999999999
Q ss_pred ccCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCcccc-cccccccC---
Q 000286 1442 LPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIED-LCLDFTLP--- 1517 (1720)
Q Consensus 1442 l~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~ied-l~L~Ft~~--- 1517 (1720)
+|||.+|||+|++.+++++||.++.|.++++|+.|+++ .|+++|| ++|+|++.
T Consensus 607 lpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~y-----------------------~gdd~ed~f~l~F~i~~~~ 663 (850)
T KOG0941|consen 607 LPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLDY-----------------------EGDDVEDVFDLTFQISQDD 663 (850)
T ss_pred CCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHhc-----------------------cccchhhheeeEEEEEehh
Confidence 99999999999999999999999999999999999985 3334544 88999876
Q ss_pred -C-CCceeccCCCc--ccCcccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCH
Q 000286 1518 -G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEP 1593 (1720)
Q Consensus 1518 -g-~~~~eL~pgG~--~VT~~N~~eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~ 1593 (1720)
| ..+++|+|||. +||.+|++|||++|++|.++..|++|++||++||++|+....+.+|.|+||+.++||+++ +||
T Consensus 664 ~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~li~G~~~-~Dw 742 (850)
T KOG0941|consen 664 NGIPRTYELKPNGDEIPVTNENRREFVNLYVDYILNKSVKKQFEAFRRGFYKVCDENLLRLFQPEELEKLICGSED-YDW 742 (850)
T ss_pred cCccceeeccCCCcccccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhchhhhhhcCHHHHHHHHhCCCc-cCH
Confidence 2 24789999999 999999999999999999999999999999999999999999999999999999999987 699
Q ss_pred HHhhhheEecCCCCCCChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCC
Q 000286 1594 AALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGP 1673 (1720)
Q Consensus 1594 e~L~~~~~~~~Gyt~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~ 1673 (1720)
+.|++.++|++||+.+||+|+|||++++.|+.++|++||+|+||++|+|++|++.| +++|.+..+
T Consensus 743 ~~l~~~~~Y~ggy~~~~~~I~~FWe~~~~~~~~~kkkfL~F~TGsdRipv~G~~~l--~~~i~~~~~------------- 807 (850)
T KOG0941|consen 743 KALEETTEYDGGYTSDSPTIQWFWEIFHAFTLEEKKKFLQFLTGSDRIPVGGLAKL--KLVIQKNGP------------- 807 (850)
T ss_pred HHHhhhceecCcccCCChHHHHHHHHHHhCCHHHhhhheEeecCCCccccCChhhc--eEEEecCCC-------------
Confidence 99999999999999999999999999999999999999999999999999999998 788876432
Q ss_pred CCCCCCCCceeecccCccccCCCCCHHHHHHHHHHHHHcCCccccC
Q 000286 1674 SESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDL 1719 (1720)
Q Consensus 1674 ~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL~~AI~eg~g~F~L 1719 (1720)
..++||+||||||.|.||+|||+|.|++||++||++..| |.|
T Consensus 808 ---~~~~lP~shTCfN~L~Lp~YsskekL~~kL~~Ai~~~~G-F~l 849 (850)
T KOG0941|consen 808 ---DEDRLPVSHTCFNVLLLPEYSSKEKLEEKLLTAINNTEG-FGL 849 (850)
T ss_pred ---CcccCcchhhhhhhhhccccCcHHHHHHHHHHHHHhccC-cCC
Confidence 368999999999999999999999999999999999999 876
No 5
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=1.5e-72 Score=682.58 Aligned_cols=341 Identities=45% Similarity=0.738 Sum_probs=313.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcc--CCCceEEEEEcCccccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccC
Q 000286 1301 QKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDG 1377 (1720)
Q Consensus 1301 ~kv~V~R~~il~~a~~~l~~~~--~~~~~L~V~F~gE~G~g~-GptrEFf~lvs~El~~~~l~lf~~~~~~~~~~~~~~~ 1377 (1720)
.+++|+|++|++++++++..+. ..+.+|+|+|.||.|+|. ||+||||+++++|+++++++||+.++++
T Consensus 1 ~~i~v~R~~i~~~~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~--------- 71 (352)
T cd00078 1 LKITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDD--------- 71 (352)
T ss_pred CeEEEECCcHHHHHHHHHHhcCHHHhcCceEEEECCCCccCCCcchHHHHHHHHHHHcCCCCCCeeecCCC---------
Confidence 3699999999999999998876 467899999999999995 8999999999999999999999987540
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCcccccCCHHHHHHHhCCCC
Q 000286 1378 DEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHEL 1457 (1720)
Q Consensus 1378 ~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ldl~fs~~f~k~llg~~~ 1457 (1720)
..+++|+|..... ..++++|+++|++||+||+++.+++++||++|||+|+|.++
T Consensus 72 ------------------~~~~~~~p~~~~~--------~~~~~~f~~~G~lig~al~~~~~l~l~f~~~f~k~L~g~~~ 125 (352)
T cd00078 72 ------------------SGLLYPNPSSFAD--------EDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPL 125 (352)
T ss_pred ------------------CceEEeCCCcccc--------hhHHHHHHHHHHHHHHHHHcCceeCCCCCHHHHHHHhCCCC
Confidence 1367888776531 35789999999999999999999999999999999999999
Q ss_pred CcccccccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCccccccccccc------CCCCceeccCCCc--
Q 000286 1458 DLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTL------PGYPDYILKPGDE-- 1529 (1720)
Q Consensus 1458 tl~DL~~vDp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedl~L~Ft~------~g~~~~eL~pgG~-- 1529 (1720)
+++||+++||+++++|++|+++ +. .+++++|+|++ .+..++||+|||+
T Consensus 126 t~~Dl~~iD~~~~~sl~~l~~~-----------------------~~-~~~~l~l~F~~~~~~~~~~~~~veL~~~G~~~ 181 (352)
T cd00078 126 SLEDLEELDPELYKSLKELLDN-----------------------DG-DEDDLELTFTIELDSSFGGAVTVELKPGGRDI 181 (352)
T ss_pred CHHHHHHhCHHHHHHHHHHHhc-----------------------CC-chhhhcceeEEEEeecCCCcceEecCCCCCCC
Confidence 9999999999999999999874 00 15678888885 3567899999999
Q ss_pred ccCcccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhheEecCCCCCC
Q 000286 1530 NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAK 1609 (1720)
Q Consensus 1530 ~VT~~N~~eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~ 1609 (1720)
+||.+|+++||+++++|+++++++.|++|||+||++|+|...|++|+|+||+.++||.++ ||+++|+++++|+|||+.+
T Consensus 182 ~VT~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lvcG~~~-id~~~l~~~~~y~~~~~~~ 260 (352)
T cd00078 182 PVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSED-IDLEDLKKNTEYKGGYSSD 260 (352)
T ss_pred cCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHHhCCCCC-CCHHHHHhceEecCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999965 7999999999999999999
Q ss_pred ChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCceeecccC
Q 000286 1610 SPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCAN 1689 (1720)
Q Consensus 1610 s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n 1689 (1720)
++.|+|||+||++||++||++||+|+||++|+|++||++++|+|+|+++.. ++++||+||||||
T Consensus 261 ~~~i~~Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~~~i~i~~~~~----------------~~~~LP~a~TCf~ 324 (352)
T cd00078 261 SPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTIRRVGS----------------PDDRLPTAHTCFN 324 (352)
T ss_pred CHHHHHHHHHHHhCCHHHHHHhheeecCCCCCCCcchhhcCCCeEEEECCC----------------CCCCCCcchhhhc
Confidence 999999999999999999999999999999999999999999999997642 4799999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCcccc
Q 000286 1690 YLKLPPYSTKEIMYKKLVYAISEGQGSFD 1718 (1720)
Q Consensus 1690 ~LkLP~YsS~eilreKL~~AI~eg~g~F~ 1718 (1720)
+|+||+|+|+|+||+||++||++|+| ||
T Consensus 325 ~L~LP~Yss~e~l~~kL~~AI~~~~g-F~ 352 (352)
T cd00078 325 LLKLPPYSSKEILREKLLYAINEGAG-FG 352 (352)
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCC-CC
Confidence 99999999999999999999999996 96
No 6
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-73 Score=690.39 Aligned_cols=386 Identities=33% Similarity=0.553 Sum_probs=342.4
Q ss_pred HhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhccCCCCCCCcchhhhcCccceeEEEEcCchHHHHHHHHHhhcc-
Q 000286 1244 QLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS- 1322 (1720)
Q Consensus 1244 ~l~~~~pFlfpfe~R~~~f~~~~fg~~r~l~~~~~~~~~~~~~~~~~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~~- 1322 (1720)
.+++++||+.||+.|+.+||. .|..=++..+.++ . .|+.....++|||++|++||+..|...+
T Consensus 599 ~IL~e~PF~vPF~~RVklfq~-------lla~dKq~~~~~~-------~--F~~g~s~~~tIRRd~iyeDAfd~f~p~~e 662 (1001)
T KOG0942|consen 599 CILKEIPFFVPFEERVKLFQR-------LLALDKQRHGGDG-------P--FGMGFSPSATIRRDHIYEDAFDAFSPKGE 662 (1001)
T ss_pred HHHHcCCeeechHHHHHHHHH-------HHHHHHHhhcCCC-------C--ccCCCCccEEEehhhhHHHHHHhcCccCC
Confidence 478899999999999999984 3322222222111 1 2233335799999999999999998776
Q ss_pred -CCCceEEEEEcCc-----cccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCcccc
Q 000286 1323 -SQKAVLEVEYFGE-----VGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHA 1395 (1720)
Q Consensus 1323 -~~~~~L~V~F~gE-----~G~g~-GptrEFf~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~ 1395 (1720)
+.|+.+.|+|.+| .|+|. |.+|||.+.++++-+++++|+|+.+..
T Consensus 663 ~dlk~~iRVtfVne~G~~EaGIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~---------------------------- 714 (1001)
T KOG0942|consen 663 PDLKSSIRVTFVNEHGVDEAGIDGGGIFKEFLTELLKTAFDPNYGLFKETED---------------------------- 714 (1001)
T ss_pred cccccceEEEEecccCccccCccCcccHHHHHHHHHHhhcCccccceeeccc----------------------------
Confidence 3578899999875 45555 789999999999999999999998854
Q ss_pred CCCCCCCCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCcccccCCHHHHHHHhCCCC--CcccccccCHHHHHHH
Q 000286 1396 PLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHEL--DLHDIIPFDAEFGKIL 1473 (1720)
Q Consensus 1396 ~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ldl~fs~~f~k~llg~~~--tl~DL~~vDp~l~~sL 1473 (1720)
+-|||+|-.+..- + ...+++|+|||+++|||||.|.++|+||+.+|.++++|..- +++||.++||++|+.|
T Consensus 715 -~lLYPNp~~~~l~--~----~~~lkhy~FLGrllGK~iYE~iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nL 787 (1001)
T KOG0942|consen 715 -HLLYPNPTAAMLL--D----VDCLKHYYFLGRLLGKCIYEGILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNL 787 (1001)
T ss_pred -ceecCCCCchhhh--h----hHHHHHHHHHHHHHHHHHHhcceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHH
Confidence 2489998776421 1 24799999999999999999999999999999999999865 9999999999999999
Q ss_pred HHHHHHHhhhhhhhccccCcccchhcccccCCcccccccccccC----C-CCceeccCCCc--ccCcccHHHHHHHHHHH
Q 000286 1474 QELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDA 1546 (1720)
Q Consensus 1474 ~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedl~L~Ft~~----g-~~~~eL~pgG~--~VT~~N~~eYV~lv~~~ 1546 (1720)
..|+++ +|+++++|.|+||+- | ...+||+|||+ +||.+|+.+||++|++|
T Consensus 788 ifLk~y-----------------------~gddi~eL~L~FtVv~~e~G~~~vVeLkPnGs~i~VTneNvi~YihLVsnY 844 (1001)
T KOG0942|consen 788 IFLKNY-----------------------NGDDISELQLDFTVVNSELGERQVVELKPNGSKIRVTNENVIEYIHLVSNY 844 (1001)
T ss_pred HHHHhc-----------------------CCCchhhccceEEEeccccccceeEEeccCCccceeechhhhhhhHHhhhh
Confidence 999886 566899999999985 3 35799999999 99999999999999999
Q ss_pred HHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhheEecCCCCCCChHHHHHHHHHhcCCHH
Q 000286 1547 TVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPD 1626 (1720)
Q Consensus 1547 ~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fwevl~~~s~e 1626 (1720)
+|+..|++|+.|||+||..|||++||.||++.||+.||+|.++.+|+++|+++|+|-+||+++||+|.+|||||++|+.|
T Consensus 845 ~LN~rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~hp~Iv~FWeVl~~F~~e 924 (1001)
T KOG0942|consen 845 KLNQRIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDHPTIVMFWEVLEEFSDE 924 (1001)
T ss_pred HHHHHHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccccCCCCCCCCchhHHHHHHHhcchH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCceeecccCccccCCCCCHHHHHHHH
Q 000286 1627 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKL 1706 (1720)
Q Consensus 1627 err~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL 1706 (1720)
+||+||+|||||+|.|+.|||+|.|+|+|...+ .++++||+|.||.|.||||+|++++.||+||
T Consensus 925 dKr~fLKFVTscsRpPllGFK~L~P~FcI~n~g----------------sd~~RLPTASTCmNLLKLP~y~~kt~LreKL 988 (1001)
T KOG0942|consen 925 DKRKFLKFVTSCSRPPLLGFKALDPAFCIRNAG----------------SDDDRLPTASTCMNLLKLPPYSNKTLLREKL 988 (1001)
T ss_pred HHHHHHHHHhcCCCcccccchhcCccceeeeCC----------------CccccCCcHHHHHHHhcCCCcccHHHHHHHH
Confidence 999999999999999999999999999998643 2689999999999999999999999999999
Q ss_pred HHHHHcCCccccCC
Q 000286 1707 VYAISEGQGSFDLS 1720 (1720)
Q Consensus 1707 ~~AI~eg~g~F~LS 1720 (1720)
+|||+.|.| |+||
T Consensus 989 lYAI~sgAG-FeLS 1001 (1001)
T KOG0942|consen 989 LYAINSGAG-FELS 1001 (1001)
T ss_pred HHHHhcccC-CCCC
Confidence 999999999 9998
No 7
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=5.3e-71 Score=661.65 Aligned_cols=320 Identities=43% Similarity=0.694 Sum_probs=290.7
Q ss_pred CCce-EEEEEcCccccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCC
Q 000286 1324 QKAV-LEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFP 1401 (1720)
Q Consensus 1324 ~~~~-L~V~F~gE~G~g~-GptrEFf~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP 1401 (1720)
.+++ |+|+|.||.|+|. ||+||||+++++|+++++++||+.+++ ..++||
T Consensus 7 ~~~~~l~V~F~gE~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~----------------------------~~~~~~ 58 (336)
T smart00119 7 LKKSVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPN----------------------------DYLLYP 58 (336)
T ss_pred hCCCeEEEEECCCCCccCCchHHHHHHHHHHHHhCcccCCceEcCC----------------------------CCeEEe
Confidence 3445 9999999999876 899999999999999999999997754 126888
Q ss_pred CCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCcccccCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHHHh
Q 000286 1402 RPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVC 1481 (1720)
Q Consensus 1402 ~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~ 1481 (1720)
+|..... ...++++|+++|++||+||+++.++|++||++|||+|+|.+++++||+++||+++++|++|+..
T Consensus 59 ~p~~~~~-------~~~~l~~f~~~G~lig~al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~-- 129 (336)
T smart00119 59 NPRAFFA-------NPEHLAYFRFIGRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLN-- 129 (336)
T ss_pred CCCcccc-------chHHHHHHHHHHHHHHHHHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHh--
Confidence 8765421 0357899999999999999999999999999999999999999999999999999999999521
Q ss_pred hhhhhhccccCcccchhcccccCCcccccccccc------cCCCCceeccCCCc--ccCcccHHHHHHHHHHHHHHhcHH
Q 000286 1482 RKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFT------LPGYPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIM 1553 (1720)
Q Consensus 1482 ~k~~~~~~~~~~~~~~~~l~~~~~~iedl~L~Ft------~~g~~~~eL~pgG~--~VT~~N~~eYV~lv~~~~l~~~v~ 1553 (1720)
++..++++|+|+ .++..++||+|||+ +||.+|+++||+++++|++..+++
T Consensus 130 ----------------------~~~~~~~~l~F~~~~~~~~g~~~~~eL~~~G~~~~Vt~~N~~eYv~~~~~~~l~~~~~ 187 (336)
T smart00119 130 ----------------------NDTSEELDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYVHLVIEYRLNKGIE 187 (336)
T ss_pred ----------------------CCCcccccceEEEEeeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHHhhhHH
Confidence 011234678887 34567899999999 999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhheEecCCCCCCChHHHHHHHHHhcCCHHHHHHhhh
Q 000286 1554 RQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQ 1633 (1720)
Q Consensus 1554 ~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fwevl~~~s~eerr~FLq 1633 (1720)
.|++|||+||++|+|...|++|+|+||+.++||.++ ||+++|+++++|+|||+.+++.|+|||+||++||++||++||+
T Consensus 188 ~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-i~~~~l~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~ee~~~fL~ 266 (336)
T smart00119 188 KQLEAFREGFSEVIPENLLRLFTPEELELLICGSPE-IDVDDLKSNTEYKGGYSENSQTIKWFWEVVESFTNEERRKLLQ 266 (336)
T ss_pred HHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCC-CCHHHHhhheEEcCCCCCCCHHHHHHHHHHHHCCHHHHHHhhe
Confidence 999999999999999999999999999999999986 7999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCceeecccCccccCCCCCHHHHHHHHHHHHHcC
Q 000286 1634 FVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEG 1713 (1720)
Q Consensus 1634 FvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL~~AI~eg 1713 (1720)
|+||++|+|+|||+.++|+|+|+++.. ++++||+||||||+|+||+|+|+|+||+||++||++|
T Consensus 267 F~TG~~rlP~~G~~~l~~~~~i~~~~~----------------~~~~LP~a~TCfn~L~LP~Yss~e~l~~kL~~AI~~~ 330 (336)
T smart00119 267 FVTGSSRLPVGGFAALSPKFTIRKAGS----------------DDDRLPTAHTCFNRLKLPPYSSKEILREKLLLAINEG 330 (336)
T ss_pred eccCCCCCCCCchhhcCCceEEEECCC----------------CCCCCCccccccCcCcCCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999997642 4799999999999999999999999999999999999
Q ss_pred CccccCC
Q 000286 1714 QGSFDLS 1720 (1720)
Q Consensus 1714 ~g~F~LS 1720 (1720)
+| |+||
T Consensus 331 ~g-F~l~ 336 (336)
T smart00119 331 KG-FGLS 336 (336)
T ss_pred CC-CCCC
Confidence 87 9997
No 8
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-65 Score=605.54 Aligned_cols=397 Identities=28% Similarity=0.497 Sum_probs=340.7
Q ss_pred hhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhc---cCCCCCCCcchhhhcCccceeEEEEcCchHHHHHHHHHhhc
Q 000286 1245 LTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQ---GADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMY 1321 (1720)
Q Consensus 1245 l~~~~pFlfpfe~R~~~f~~~~fg~~r~l~~~~~~~---~~~~~~~~~~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~ 1321 (1720)
|++..|.+||+|.|+++|+. ..|... +.-+.... .|+. ...+.|+|++|+||.+++++..
T Consensus 670 ll~~mpHviP~edRv~lFR~----------fVqkdKa~~~lv~ts~a------~p~~-~t~IvvrR~rivEDGf~qL~~l 732 (1096)
T KOG4427|consen 670 LLTKMPHVIPHEDRVLLFRE----------FVQKDKASRGLVETSDA------SPAR-STEIVVRRGRIVEDGFQQLNSL 732 (1096)
T ss_pred EeccCCcccChHHHHHHHHH----------HHhhhHHhhcccccccC------Cccc-eeEEEEEcccchhhHHHHHHhc
Confidence 45578999999999999984 223222 11111111 1111 2568999999999999999988
Q ss_pred cC--CCceEEEEEcCccc-----cCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCcc
Q 000286 1322 SS--QKAVLEVEYFGEVG-----TGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLV 1393 (1720)
Q Consensus 1322 ~~--~~~~L~V~F~gE~G-----~g~-GptrEFf~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv 1393 (1720)
+. .|+.+.|.|.+|.| +|. |+.+||...+.+..++|.++||..++. +
T Consensus 733 ~~~alKs~IrVkFVNeqGl~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~-d------------------------ 787 (1096)
T KOG4427|consen 733 GSPALKSVIRVKFVNEQGLDEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTST-D------------------------ 787 (1096)
T ss_pred cchhhhceEEEEEecccCCcccccCccchHHHHHHHHHHHHhcccccccccCCC-C------------------------
Confidence 75 69999999998664 566 899999999999999999999987753 0
Q ss_pred ccCCCCCCCCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCcccccCCHHHHHHHhCCCC--CcccccccCHHHHH
Q 000286 1394 HAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHEL--DLHDIIPFDAEFGK 1471 (1720)
Q Consensus 1394 ~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ldl~fs~~f~k~llg~~~--tl~DL~~vDp~l~~ 1471 (1720)
.-|||.|.+.. .+.++++|+|+||++|||+|.|.++|+||+++|...++|..- .++.|..+||++|+
T Consensus 788 ---~~LyPSPts~~--------~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~vflsqlLG~~~~s~~DELs~LDpElYr 856 (1096)
T KOG4427|consen 788 ---RRLYPSPTSYH--------HENHLQLFEFVGRMLGKAVYEGIVVDVPFASVFLSQLLGRHSLSFIDELSSLDPELYR 856 (1096)
T ss_pred ---ceecCCchhhh--------hhchhHHHHHHHHHHHHHHhcceEEecccHHHHHHHHhcccchhhhhhccccCHHHHh
Confidence 14899987764 257899999999999999999999999999999999999865 78999999999999
Q ss_pred HHHHHHHHHhhhhhhhccccCcccchhcccccCCcccccccccccC----C-CCceeccCCCc--ccCcccHHHHHHHHH
Q 000286 1472 ILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVV 1544 (1720)
Q Consensus 1472 sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedl~L~Ft~~----g-~~~~eL~pgG~--~VT~~N~~eYV~lv~ 1544 (1720)
+|..++.+ +| ++.||||+|++. | ...+||+|||+ .||++|+-.||..++
T Consensus 857 nLtfvKhY-----------------------dg-d~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH~MA 912 (1096)
T KOG4427|consen 857 NLTFVKHY-----------------------DG-DLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIHAMA 912 (1096)
T ss_pred hhhHHHhh-----------------------cc-cHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHHHHH
Confidence 99999875 33 688999999986 3 35789999999 999999999999999
Q ss_pred HHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhheEecCCCCCCChHHHHHHHHHhc-C
Q 000286 1545 DATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGE-F 1623 (1720)
Q Consensus 1545 ~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fwevl~~-~ 1623 (1720)
+|+++..+++|..||-+||.+++...||++|+|.||+.||.|...++|+++|++|++|.+||+.+|++|+|||+||.. |
T Consensus 913 ~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~dF 992 (1096)
T KOG4427|consen 913 HFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAGDF 992 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999888889999999999999999999999999999985 9
Q ss_pred CHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCC---------CCCCCCCCceeecccCccccC
Q 000286 1624 TPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGP---------SESADDDLPSVMTCANYLKLP 1694 (1720)
Q Consensus 1624 s~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~---------~~~~d~~LPsa~TC~n~LkLP 1694 (1720)
++|||+.||+|||.|+|.|+-||+.|.|+|.|.+..-+.+ ...+...|. ...+-.+||+|+||||.||||
T Consensus 993 t~eERklfLKFVTSCSrpPlLGFayLePpFsIrCVeVSdD-qd~gdtiGSVvRGFfaiRKg~~~~RLPTaSTCfNlLKLP 1071 (1096)
T KOG4427|consen 993 TPEERKLFLKFVTSCSRPPLLGFAYLEPPFSIRCVEVSDD-QDTGDTIGSVVRGFFAIRKGQPVERLPTASTCFNLLKLP 1071 (1096)
T ss_pred ChHHHHHHHHHHhhcCCCccccccccCCCceEEEEEecCc-ccchhhHhHHHHhhhhhhcCCccccCCchhhHHHhhhCC
Confidence 9999999999999999999999999999999885432221 112222221 134778999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCccccCC
Q 000286 1695 PYSTKEIMYKKLVYAISEGQGSFDLS 1720 (1720)
Q Consensus 1695 ~YsS~eilreKL~~AI~eg~g~F~LS 1720 (1720)
.|+-|..|||||+|||..+.| |+||
T Consensus 1072 nY~kkStlreKLrYAIssntG-FELS 1096 (1096)
T KOG4427|consen 1072 NYKKKSTLREKLRYAISSNTG-FELS 1096 (1096)
T ss_pred CcchhHHHHHHHHHHhhcCCC-cccC
Confidence 999999999999999999999 9998
No 9
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=3.2e-65 Score=612.05 Aligned_cols=381 Identities=32% Similarity=0.532 Sum_probs=331.6
Q ss_pred HHHHHhcCCCchHHHHhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhccCCCCCCCcchhhhcCccceeEEEEcCc
Q 000286 1229 DALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRN 1308 (1720)
Q Consensus 1229 ~~l~~~s~~lp~w~~~l~~~~pFlfpfe~R~~~f~~~~fg~~r~l~~~~~~~~~~~~~~~~~~~~~~~rl~r~kv~V~R~ 1308 (1720)
+|-+++.| ..+...+|-+..|+.++.||+. .+.+.... -....|.|+|+
T Consensus 323 ~~~~L~~~------f~ll~~~~~ll~F~~Kr~yf~r-------~L~~~~~~------------------~~~~~v~v~R~ 371 (720)
T KOG0939|consen 323 NPNILAAG------FSLLLKNPMLLDFDNKRKYFKR-------ELRKEHAS------------------SEKLAVLVRRA 371 (720)
T ss_pred Cchhhhcc------hhhheecCcceecccHHHHHHH-------HHHHhhcc------------------CCcceEEEeHH
Confidence 45556665 4577889999999999999984 22222111 01345899999
Q ss_pred hHHHHHHHHHhhcc--CCCceEEEEEcCccccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCC
Q 000286 1309 RILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKT 1385 (1720)
Q Consensus 1309 ~il~~a~~~l~~~~--~~~~~L~V~F~gE~G~g~-GptrEFf~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~ 1385 (1720)
.+|++.++.+.... ..+..|+|.|.||+|.|+ |++||||.++++|+++|++.||..... +..
T Consensus 372 ~v~~~S~~~~~~~s~~e~~~rl~I~f~gEEg~D~gG~~rEw~~ll~r~ifnp~~alf~~~~~-d~t-------------- 436 (720)
T KOG0939|consen 372 LVLEDSFRALLYKSPEELKTRLEVTFQGEEGSDAGGVTREWLQLLSREIFNPRYALFTTVGS-DQT-------------- 436 (720)
T ss_pred HHHHHHHHHHHhCCHHHHhcceEEEEecccccccchHHHHHHHHHHHHHcCCCcceEEEcCC-Cce--------------
Confidence 99999998876554 457799999999999999 599999999999999999999987754 100
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCcccccCCHHHHHHHhCCCCCccccccc
Q 000286 1386 SNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPF 1465 (1720)
Q Consensus 1386 ~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~v 1465 (1720)
.+.|+|.+.. ...++.+|+|.||++||||+||+.++..|.+.|||+++|.++++.|++..
T Consensus 437 ------------t~~pn~~s~~--------np~hLs~fkf~GriigKal~d~ql~~c~ftrsfyk~ilG~~v~~~d~es~ 496 (720)
T KOG0939|consen 437 ------------TFHPNPNSYV--------NPEHLSYFKFVGRIIGKALFDGQLLECYFTRSFYKHILGLPVTYHDMESA 496 (720)
T ss_pred ------------EEeeCCcccC--------ChhhhhHHHhhHHHHHHHHhcchhhhheeeHHHHhhccCCceeeeehhhc
Confidence 2345554321 14799999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCcccc-cccccccC----C-CCceeccCCCc--ccCcccHH
Q 000286 1466 DAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIED-LCLDFTLP----G-YPDYILKPGDE--NVDINNLE 1537 (1720)
Q Consensus 1466 Dp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~ied-l~L~Ft~~----g-~~~~eL~pgG~--~VT~~N~~ 1537 (1720)
||++|++|.||++. ++.+ |.++|... | ...+||+|||+ .||.+|+.
T Consensus 497 DP~y~k~l~~il~n--------------------------dis~~l~ltfs~e~~~~g~~~~~eL~p~G~~i~Vt~~nK~ 550 (720)
T KOG0939|consen 497 DPEYYKSLVWILKN--------------------------DISDTLELTFSEEDDEFGVESVVELKPGGAKIYVTEANKQ 550 (720)
T ss_pred ChHHhhceeehhcC--------------------------CcccceeEEEEEeeccccccceeecccCCCceeeccccHH
Confidence 99999999999762 2222 56666654 3 46899999999 99999999
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhheEecCCCCCCChHHHHHH
Q 000286 1538 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLL 1617 (1720)
Q Consensus 1538 eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fw 1617 (1720)
+||+++++++|..+|++|++||.+||++++|...+++|++.||+.|+||.+++ |+++|+.+++| +||+..+++|+|||
T Consensus 551 ~yv~lv~q~rL~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisGlpei-dvdd~k~nt~y-~~~~~~~~~i~wFW 628 (720)
T KOG0939|consen 551 EYVQLVTQYRLTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISGLPEI-DVDDLKANTEY-LGYTKASSVIQWFW 628 (720)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCcc-cHHHHHhhhhh-hcccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 99999999999 79999999999999
Q ss_pred HHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCC-----ceEEEecCCCCCCCCCCCCCCCCCCCCCCCceeecccCccc
Q 000286 1618 EIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLK 1692 (1720)
Q Consensus 1618 evl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p-----~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~Lk 1692 (1720)
++|.+|+++||.+|||||||++++|++||+.|.+ +|+|.+.+. ..++||++|||||+|+
T Consensus 629 rav~sf~~eeraklLqFvTGtSkvP~~GF~~l~g~ng~q~fqi~~~~~----------------s~d~LP~ahTCfnqL~ 692 (720)
T KOG0939|consen 629 RAVRSFDQEERAKLLQFVTGTSKVPLGGFAALEGMNGVQKFQIHADPG----------------STDRLPTAHTCFNQLF 692 (720)
T ss_pred HHHhhhcHHHHHhhHeeecccccCCcccccccccCCcceeEEEEeCCC----------------CCCCCcchhhhhhhhc
Confidence 9999999999999999999999999999999998 899987542 3589999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCccccC
Q 000286 1693 LPPYSTKEIMYKKLVYAISEGQGSFDL 1719 (1720)
Q Consensus 1693 LP~YsS~eilreKL~~AI~eg~g~F~L 1719 (1720)
||.|.|+|.++++|+.||+||..+|++
T Consensus 693 LP~Y~Sye~l~~~LllAi~E~segfg~ 719 (720)
T KOG0939|consen 693 LPHYASYEQLRESLLLAINEGSEGFGM 719 (720)
T ss_pred CcchhhHHHHHHHHHHHHHhhhhccCc
Confidence 999999999999999999999988986
No 10
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=100.00 E-value=1.2e-59 Score=564.35 Aligned_cols=307 Identities=40% Similarity=0.699 Sum_probs=247.1
Q ss_pred HHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCCCCCC-CCCCCccCCChhhHHHHHHHc
Q 000286 1348 TLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWP-PSADASEGGQFSKVIEYFRLL 1426 (1720)
Q Consensus 1348 ~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~-~~~~~~~~~~~~~~l~~F~~l 1426 (1720)
++|++|+++|+++||..+++ ..+ ++|+|.. ....... .....+++|+++
T Consensus 1 ~l~~~el~~~~~~lF~~~~~----------------------~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~l 50 (317)
T PF00632_consen 1 TLLCKELFDPNLGLFYQTSN----------------------NGL------FWPNPNSNRDSPSPA--SSEEHLKMFRFL 50 (317)
T ss_dssp HHHHHHHTSGGGSSEESSTT----------------------TCE------EEEECCH----TTGG--GSTTHHHHHHHH
T ss_pred CHHHHHhcCccCCCceEcCC----------------------CCE------EeCCCcccccccccc--cCHHHHHHHHHH
Confidence 58999999999999966544 111 2233221 0000000 013678999999
Q ss_pred ccceeeheecCCcccccCCHHHHHHHh-CCCCCcccccccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCC
Q 000286 1427 GRVMAKALQDGRLLDLPFSTAFYKLVL-GHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGA 1505 (1720)
Q Consensus 1427 G~lig~Al~d~~~ldl~fs~~f~k~ll-g~~~tl~DL~~vDp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~ 1505 (1720)
|++||+||+++.+++++|+++|||+|+ |.+++++||+++||+++++|++|+++.. +..
T Consensus 51 G~lig~ai~~~~~l~~~f~~~~~k~l~~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~---------------------~~~ 109 (317)
T PF00632_consen 51 GRLIGKAIRNGIPLPLPFSPAFWKYLLSGEPLTLEDLEEIDPELYKSLKKLLDMDN---------------------DEE 109 (317)
T ss_dssp HHHHHHHHHTTS-ESSEB-HHHHHHHT-T----HHHHHCCSHHHHHHHHHHHHSHS---------------------GSC
T ss_pred HHHHHHHHHcCCccccCcCHHHHHHHhcCCCCccccchhcCchhhcchhhheeccc---------------------ccc
Confidence 999999999999999999999999999 9999999999999999999999987411 122
Q ss_pred cccccccccccCCC------CceeccCCCc--ccCcccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCH
Q 000286 1506 PIEDLCLDFTLPGY------PDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTP 1577 (1720)
Q Consensus 1506 ~iedl~L~Ft~~g~------~~~eL~pgG~--~VT~~N~~eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~ 1577 (1720)
.+++++++|+++.. .+++|++||. .||.+|+++||++++++++.++++.|+++||+||.+|+|...+++|+|
T Consensus 110 ~~~~l~l~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N~~eyv~~~~~~~l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~ 189 (317)
T PF00632_consen 110 DVEDLDLTFSVPSSSGGGQVEEVELIPGGSNIPVTNENKEEYVRLLAQYRLNESVKKQLEAFRKGFYSVIPLELLSLFSP 189 (317)
T ss_dssp TTSGCTEBSEEEEEECTTEEEEEESSTTGGGSB-TTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSSHHHHTTSSH
T ss_pred ceeecceEEEEecccccCceeEeeecCCCcccccchhhhhHHHHhhhhhhcccccchhHHHHhcchhhcchhHHHHcCCH
Confidence 46789999998732 3689999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCHHHhhhheEecCCCCCCChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEe
Q 000286 1578 HELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVR 1657 (1720)
Q Consensus 1578 ~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~ 1657 (1720)
+||+.++||.++.||+++|+++++|++||+.+++.|+|||+||++|+++||++||+|+||++|+|+|||+.|+|+|+|++
T Consensus 190 ~eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~~~~fL~F~TG~~~lP~~G~~~l~~~i~i~~ 269 (317)
T PF00632_consen 190 EELERLLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEERRKFLRFVTGSSRLPPGGFSNLNPKITIQF 269 (317)
T ss_dssp HHHHHHHHCBSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSSB-TTGGGGGE-EEEEEE
T ss_pred HHHHHHhcCccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHHhheeEEEecCCCCCCccccccccceeEEee
Confidence 99999999998757999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCceeecccCccccCCCCCHHHHHHHHHHHHHcCCccccCC
Q 000286 1658 KHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720 (1720)
Q Consensus 1658 k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL~~AI~eg~g~F~LS 1720 (1720)
.... ++++||+||||||+|+||.|+|+|+||+||++||++|+++|+||
T Consensus 270 ~~~~---------------~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~Ai~~~~~gF~~s 317 (317)
T PF00632_consen 270 SDDS---------------PDDRLPTAHTCFNTLKLPRYSSKEILREKLLYAIENGQEGFGLS 317 (317)
T ss_dssp ESC----------------STTS--EEEGGGTEEEEEE-SSHHHHHHHHHHHHHHT-------
T ss_pred cCCC---------------ccccCceecCcCCEEECCCCCCHHHHHHHHHHHHHcCCCCcCcC
Confidence 7632 36899999999999999999999999999999999996669998
No 11
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.9e-50 Score=443.30 Aligned_cols=387 Identities=22% Similarity=0.302 Sum_probs=346.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
+.+++|.+.|.++ |-+.|+.|+..+|++|+.++.++++.++..|+||++|++|......-+|++|+|+||||++++..+
T Consensus 71 ~elp~lt~~l~Sd-Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 71 SELPQLTQQLFSD-DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhhHHHHHHHhhh-HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 4789999999998 999999999999999999999999999999999999999965445678999999999999999999
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhccCC--hHHHHHHHHHHHHh
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFS--TGVQRVALSTAANM 166 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~--~~vqr~Al~aLsNl 166 (1720)
++.||++||||.|+ .||.+...+++||++|||+||++|++. .|+++|+|.++|.+|.... +++.|++.|+++|+
T Consensus 150 TkvVvd~~AVPlfi-qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 150 TKVVVDAGAVPLFI-QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred eEEEEeCCchHHHH-HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 99999999999999 999999999999999999999999885 6999999999999998654 58999999999999
Q ss_pred cc-CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCC
Q 000286 167 CK-KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1720)
Q Consensus 167 c~-~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ 245 (1720)
|| +.|+++...+..++|+|.+|+...|++|+.+||||++||+++ ..+.++.+++.|+.++|+++|.+.
T Consensus 229 cRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg---~~E~i~avld~g~~~RLvElLs~~-------- 297 (526)
T COG5064 229 CRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG---PNEKIQAVLDVGIPGRLVELLSHE-------- 297 (526)
T ss_pred hCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC---cHHHHHHHHhcCCcHHHHHHhcCc--------
Confidence 99 568899999999999999999999999999999999999998 999999999999999999999997
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC----cccccccccccCCCHHHHHHHHHHhhccCCCC
Q 000286 246 LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG----VSANSAVPPALSRPAEQIFEIVNLANELLPPL 321 (1720)
Q Consensus 246 ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~----~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L 321 (1720)
+..+++++||.++||++|++.+++.+|++|+++.+..||.+.+ +++||+++||.+|+.+|+|+||+ ++|+|||
T Consensus 298 -sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid--~nliPpL 374 (526)
T COG5064 298 -SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVID--ANLIPPL 374 (526)
T ss_pred -cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHh--cccchHH
Confidence 5668999999999999999999999999999999999998876 48999999999999999999999 6666654
Q ss_pred CCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q 000286 322 PQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRH 401 (1720)
Q Consensus 322 ~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~ 401 (1720)
++.. ++.++-+|+
T Consensus 375 ------------------------------------------------------------------i~ll-s~ae~k~kK 387 (526)
T COG5064 375 ------------------------------------------------------------------IHLL-SSAEYKIKK 387 (526)
T ss_pred ------------------------------------------------------------------HHHH-HHHHHHHHH
Confidence 3333 446888999
Q ss_pred HHHHHHHHHhhcCC--HHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHH----------hhCchhhhhhHHhh
Q 000286 402 KCLSVIGKLMYFSS--AEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILM----------EKLPGTFSKMFVRE 469 (1720)
Q Consensus 402 ~~L~~l~r~v~~~~--~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll----------~K~pd~f~~~f~RE 469 (1720)
++.|||.+..+.+. |+.++-++.+..|. -|..+|.-.|+.++-.+|..++.++ -|.+.+|..+.++-
T Consensus 388 EACWAisNatsgg~~~PD~iryLv~qG~Ik-pLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~A 466 (526)
T COG5064 388 EACWAISNATSGGLNRPDIIRYLVSQGFIK-PLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKA 466 (526)
T ss_pred HHHHHHHhhhccccCCchHHHHHHHccchh-HHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhc
Confidence 99999999988764 56777666664333 3345566688888888899888887 35678999999999
Q ss_pred cHHHHHHHHHhcC
Q 000286 470 GVVHAVDQLILAG 482 (1720)
Q Consensus 470 GV~~~I~~L~~~~ 482 (1720)
|.++.|..|....
T Consensus 467 ggmd~I~~~Q~s~ 479 (526)
T COG5064 467 GGMDAIHGLQDSV 479 (526)
T ss_pred ccHHHHHHhhhcc
Confidence 9999999997653
No 12
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-48 Score=467.32 Aligned_cols=388 Identities=26% Similarity=0.365 Sum_probs=355.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
.....++..+.++ |+..|+.|+..+|++++...++++..++..|+||.||++|...+++.+|++||||||||+++++++
T Consensus 66 ~~~~~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~ 144 (514)
T KOG0166|consen 66 SNLELMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ 144 (514)
T ss_pred hhhHHHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh
Confidence 3478889999998 999999999999999999999999888888999999999997778999999999999999999999
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhccC-ChHHHHHHHHHHHHhc
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFF-STGVQRVALSTAANMC 167 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~-~~~vqr~Al~aLsNlc 167 (1720)
++.||++||||.|+ +|+.++..+++|||+|||+||+++++. .|+.+|++.+|+.++... ...+.|+++|+|+|+|
T Consensus 145 T~~vv~agavp~fi-~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFI-QLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred ccccccCCchHHHH-HHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999886 699999999999999865 4599999999999999
Q ss_pred cCC-CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCC
Q 000286 168 KKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASL 246 (1720)
Q Consensus 168 ~~~-~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~l 246 (1720)
++. |.+.+..+..++|.|..+|++.|.+|+.+|||+|+||+++ .++.++++++.|++++|+.||.+.
T Consensus 224 rgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg---~ne~iq~vi~~gvv~~LV~lL~~~--------- 291 (514)
T KOG0166|consen 224 RGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG---SNEKIQMVIDAGVVPRLVDLLGHS--------- 291 (514)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---ChHHHHHHHHccchHHHHHHHcCC---------
Confidence 965 9999999999999999999999999999999999999997 999999999999999999999997
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC-----cccccccccccCCCHHHHHHHHHHhhccCCCC
Q 000286 247 STPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG-----VSANSAVPPALSRPAEQIFEIVNLANELLPPL 321 (1720)
Q Consensus 247 s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~-----~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L 321 (1720)
+..++.+|||+++||++|++.+|+.+|++|+++.|..+|+.+. ++++|+++||.+|+.+||++|++
T Consensus 292 ~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVid--------- 362 (514)
T KOG0166|consen 292 SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVID--------- 362 (514)
T ss_pred CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHH---------
Confidence 4568899999999999999999999999999999999999543 36899999999999999999999
Q ss_pred CCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q 000286 322 PQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRH 401 (1720)
Q Consensus 322 ~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~ 401 (1720)
..++|.|+.+++++ ++.+|+
T Consensus 363 -----------------------------------------------------------a~l~p~Li~~l~~~-ef~~rK 382 (514)
T KOG0166|consen 363 -----------------------------------------------------------ANLIPVLINLLQTA-EFDIRK 382 (514)
T ss_pred -----------------------------------------------------------cccHHHHHHHHhcc-chHHHH
Confidence 25688888899887 599999
Q ss_pred HHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHH---hhCc----hhhhhhHHhhcHHHH
Q 000286 402 KCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILM---EKLP----GTFSKMFVREGVVHA 474 (1720)
Q Consensus 402 ~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll---~K~p----d~f~~~f~REGV~~~ 474 (1720)
++.|+|.++..-.+++++.-+++.. +-..+-.+|...|..++..+|...+.|+ ++.. ..|....+..|-.++
T Consensus 383 EAawaIsN~ts~g~~~qi~yLv~~g-iI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldk 461 (514)
T KOG0166|consen 383 EAAWAISNLTSSGTPEQIKYLVEQG-IIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDK 461 (514)
T ss_pred HHHHHHHhhcccCCHHHHHHHHHcC-CchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhH
Confidence 9999999999999999999888877 4445555668899888888888888887 3443 678888999999999
Q ss_pred HHHHHhcCC
Q 000286 475 VDQLILAGN 483 (1720)
Q Consensus 475 I~~L~~~~~ 483 (1720)
|+.|..+++
T Consensus 462 iE~LQ~hen 470 (514)
T KOG0166|consen 462 IENLQSHEN 470 (514)
T ss_pred HHHhhcccc
Confidence 999998754
No 13
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-39 Score=378.45 Aligned_cols=329 Identities=28% Similarity=0.433 Sum_probs=286.9
Q ss_pred ceeEEEEcCchHHHHHHHHHhhcc--CCCceEEEEEcCccccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccc
Q 000286 1299 ERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEI 1375 (1720)
Q Consensus 1299 ~r~kv~V~R~~il~~a~~~l~~~~--~~~~~L~V~F~gE~G~g~-GptrEFf~lvs~El~~~~l~lf~~~~~~~~~~~~~ 1375 (1720)
+..+++|+|+++||++++.+...+ +.+..+-+.|.+|+|.+. |+-||||.++++|.+.|.+++|..... + .+
T Consensus 15 ~~~~~~~~~~~~~e~~f~~iM~~~~~~~~~~l~~~~~~ee~ldy~glprewf~~lS~e~~~p~~~~~~~~~~-~-~t--- 89 (358)
T KOG0940|consen 15 QQSHHKVDRDHLLEDSFNQIMNPKPSDLQKRLMREFKGEEGLDYGGLPREWFFLLSHEGFNPWYGLFQHSRK-D-YT--- 89 (358)
T ss_pred ceeEEEechhhhHHHHHHHHhCCCchhhhhcceeecccccccccCCCCcceeeeeccccCCcceeeeeeccc-c-cc---
Confidence 467899999999999987654433 468889999999999776 789999999999999999999987754 1 12
Q ss_pred cCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCChhhHHHHHHHcccceeeheecCCcccccCCHHHHHHHhCC
Q 000286 1376 DGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGH 1455 (1720)
Q Consensus 1376 ~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lig~Al~d~~~ldl~fs~~f~k~llg~ 1455 (1720)
+..+|.... ...++.+|+|+|+++|+|+++++.++-- -.+|||.|+++
T Consensus 90 -----------------------lq~~P~sg~--------~p~~l~~~~~vg~~~~l~~~h~~~~~~g-~r~F~~~i~~k 137 (358)
T KOG0940|consen 90 -----------------------LWLNPRSGV--------NPGHLTYFRFVGGVLALAGWHMRFTDTG-QRPFYKHILKK 137 (358)
T ss_pred -----------------------cccCCccCC--------CCCcccccccccccccccceeeEecCCC-ceehhhhhhcC
Confidence 222333220 1357899999999999999999999987 99999999999
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCcccccccccccC----C-CCceeccCCCc-
Q 000286 1456 ELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE- 1529 (1720)
Q Consensus 1456 ~~tl~DL~~vDp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedl~L~Ft~~----g-~~~~eL~pgG~- 1529 (1720)
+++++|.+.+|+++++++.+++.. ++.. |++|.++ | ....+|+|+|.
T Consensus 138 tt~ldd~e~~d~e~~~s~~~~~en--------------------------~~~~-~~~f~~~~~~~g~~~~~~l~p~g~~ 190 (358)
T KOG0940|consen 138 TTTLDDREAVDPEFYNSLTWIREN--------------------------DPTN-DLTFSVESEVLGQITTQELKPNGAN 190 (358)
T ss_pred ccccCchhhcCccccccccccccC--------------------------Cccc-chhhhcchhhcCCccceeecCCCcc
Confidence 999999999999999999988652 1112 6777765 3 35789999999
Q ss_pred -ccCcccHHHHHHHHHHHHHHhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhheEecCCCCC
Q 000286 1530 -NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTA 1608 (1720)
Q Consensus 1530 -~VT~~N~~eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~ 1608 (1720)
.||.+|+++||.++++ ++..++..|..+|..||..+.|...+++|.+.|++.++||..++ ++++|+.++.|. ||..
T Consensus 191 ~~v~~~n~~~yi~~l~~-r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~~~~~~~~~-~~~d~~~~t~~~-~~~~ 267 (358)
T KOG0940|consen 191 IQVTEENKKEYIMLLQN-RFERGIQEQLKALLQGFNELLPQSLLRIFDEMELELALSGDPEI-DVNDWKQNTEYR-GYSE 267 (358)
T ss_pred cccccccHHHHHHHHHH-HHHHHHHHHHHHHhccccccCCcccccccchhhHHHHhcCCccc-chhHHhhhcccc-cccC
Confidence 9999999999999999 88899999999999999999999999999999999999999986 999999999997 8999
Q ss_pred CChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCC-----ceEEEecCCCCCCCCCCCCCCCCCCCCCCCce
Q 000286 1609 KSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPS 1683 (1720)
Q Consensus 1609 ~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p-----~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPs 1683 (1720)
++++|.|||+++.+|+.++|.+.++|+||++++|.+||+.|.- +++|-.. ...+.||.
T Consensus 268 ~~~~i~wf~~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~~s~~~~~~~ie~~-----------------~~~~~~p~ 330 (358)
T KOG0940|consen 268 TDRQIDWFWNNVDEMDNEERIRLLQFVTGTSRVPVEGFAILSGSNGPRKFCIEKW-----------------GKSTQLPR 330 (358)
T ss_pred CccccHHHHHhhhhcChHHHHhhhhccCCCccccccchhhccCCCccCceeecCc-----------------ccccccch
Confidence 9999999999999999999999999999999999999998864 5666541 15689999
Q ss_pred eecccCccccCCCCCHHHHHHHHHHHHH
Q 000286 1684 VMTCANYLKLPPYSTKEIMYKKLVYAIS 1711 (1720)
Q Consensus 1684 a~TC~n~LkLP~YsS~eilreKL~~AI~ 1711 (1720)
+|||||.|.||.|.+++.|++||..||+
T Consensus 331 ~htcfnrld~~~~~s~~~L~~kl~~ai~ 358 (358)
T KOG0940|consen 331 SHTCFNRLDLPPYESYEPLREKLLLAIE 358 (358)
T ss_pred hcccccccccccccchhHHHHHHHHhcC
Confidence 9999999999999999999999999984
No 14
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=376.77 Aligned_cols=265 Identities=25% Similarity=0.377 Sum_probs=219.0
Q ss_pred hhHHHHHHHcccceeeheecCCcccccCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHHHhhhhhhhccccCcccc
Q 000286 1417 SKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEE 1496 (1720)
Q Consensus 1417 ~~~l~~F~~lG~lig~Al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~k~~~~~~~~~~~~~ 1496 (1720)
+..+..|+-+||++|.||..|-+.|+.|++.+||+|||.++.|.|+..+||.++.+|+.|..... ..+.+
T Consensus 2739 ~~RLaafRniGRIlGiCL~Qgdi~PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkAhp---------sSd~D- 2808 (3015)
T KOG0943|consen 2739 EARLAAFRNIGRILGICLLQGDICPIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKAHP---------SSDAD- 2808 (3015)
T ss_pred HHHHHHHHhhhhHhhhhhhcCcccceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhcCC---------ccccc-
Confidence 46789999999999999999999999999999999999999999999999999999999876411 01000
Q ss_pred hhcccccCCccccccccccc-----CCCCceeccCCCc--ccCcccHHHHHHHHHHHHHHhcHHHHHHHHHhhccccccc
Q 000286 1497 VVDLRFRGAPIEDLCLDFTL-----PGYPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDI 1569 (1720)
Q Consensus 1497 ~~~l~~~~~~iedl~L~Ft~-----~g~~~~eL~pgG~--~VT~~N~~eYV~lv~~~~l~~~v~~q~~afr~GF~~V~p~ 1569 (1720)
..+..+.+.|.. .|...++|+|||. +||.+|+-|||.+|++++|.......++|+|+|+.+|+|.
T Consensus 2809 --------adFS~md~aa~gdlckee~a~qVeL~PNGdeilVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPe 2880 (3015)
T KOG0943|consen 2809 --------ADFSAMDLAAAGDLCKEEGAGQVELIPNGDEILVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPE 2880 (3015)
T ss_pred --------chhhHHHHhhccchhhhcCceeEEEecCCceeeecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcch
Confidence 011122222222 2566899999998 9999999999999999999987778899999999999999
Q ss_pred ccccCCCHHHHHhhhcCCCCCCCHHHhhhheEecCCCCCCC----hHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCC
Q 000286 1570 TSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKS----PAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGG 1645 (1720)
Q Consensus 1570 ~~L~~F~~~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s----~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gG 1645 (1720)
..|.-++++++..+|||.++. ++..|.++|-|...--.+. +.-+|||+|++.|+..||+.++.||||||.||..|
T Consensus 2881 nmL~~LT~EDfRLiicG~eeV-niqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEkQdLVfFWTgSPaLPAa~ 2959 (3015)
T KOG0943|consen 2881 NMLEDLTAEDFRLIICGCEEV-NIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEKQDLVFFWTGSPALPAAE 2959 (3015)
T ss_pred hhhcccCHhHheeeeecccce-ehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhhccEEEEecCCCCCCccc
Confidence 999999999999999999986 9999999875532211111 36689999999999999999999999999999886
Q ss_pred CccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCceeecccCccccCCCCCHHHHHHHHHHHHHcCCccc
Q 000286 1646 LAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSF 1717 (1720)
Q Consensus 1646 f~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilreKL~~AI~eg~g~F 1717 (1720)
- .+.|.-.|...++ .|.+||+|+||..+|+.|-||||.+||+||+.||+-..-||
T Consensus 2960 e-~~p~~aSimiRP~----------------dD~fLPTANTCISRLYVPlYSSKqiLkqKLLLAIKaKNFGF 3014 (3015)
T KOG0943|consen 2960 E-GFPPMASIMIRPP----------------DDQFLPTANTCISRLYVPLYSSKQILKQKLLLAIKAKNFGF 3014 (3015)
T ss_pred c-CCCCCCceeecCc----------------ccccCCcccchhhheeeechhhHHHHHHHHHHhhhcccccc
Confidence 2 2234444444443 57899999999999999999999999999999999864334
No 15
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3e-28 Score=294.55 Aligned_cols=298 Identities=20% Similarity=0.216 Sum_probs=268.0
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
++.++.+|+.|..++++..|++|+|+|.++.+...+.+ ..++.+|.||.|+.+|.++ +.+++..|+|||+||+..++.
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T-~~vv~agavp~fi~Ll~s~-~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT-KVVVDAGAVPIFIQLLSSP-SADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc-cccccCCchHHHHHHhcCC-cHHHHHHHHHHHhccccCChH
Confidence 47899999999876689999999999999999887766 5789999999999999988 499999999999999999999
Q ss_pred chhhhcccccHHHHHHHHhcCCc-HHHHHHHHHHHHHhhccC-cc--hhhhcCchhHHhhhhccCChHHHHHHHHHHHHh
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEY-MDLAEQSLQALKKISQEH-PT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~-~dl~Eqal~aL~nIS~~~-~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1720)
++..|+++|++++|+ .++...+ +.+..+++|+|.|+|+.. |. ...-...|+.|..+|...+..++..|+|+++++
T Consensus 186 ~Rd~vl~~g~l~pLl-~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLL-RLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHHhhcchHHHH-HHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999 6666555 578899999999999875 33 455567899999999999999999999999999
Q ss_pred ccCC-CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCC
Q 000286 167 CKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1720)
Q Consensus 167 c~~~-~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ 245 (1720)
..+. +..+.....+++|.|+.+|.+.+..++.-|+.++.||+.| ++++.+.+++.|+++.|..||....
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG---~d~QTq~vi~~~~L~~l~~ll~~s~------- 334 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG---SDEQTQVVINSGALPVLSNLLSSSP------- 334 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec---cHHHHHHHHhcChHHHHHHHhccCc-------
Confidence 9854 5556666679999999999999999999999999999998 9999999999999999999998542
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC----cccccccccc-cCCCHHHHHHHHHHhhccCCC
Q 000286 246 LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG----VSANSAVPPA-LSRPAEQIFEIVNLANELLPP 320 (1720)
Q Consensus 246 ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~----~~~~~~~s~i-~~~~~~qi~~vi~li~~LLP~ 320 (1720)
...++..|+|+|+||++|+.+++++++++|++|.|..+|.... ++++|+++|+ ..|+++|+..+++ .+++++
T Consensus 335 -~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~--~giI~p 411 (514)
T KOG0166|consen 335 -KESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVE--QGIIKP 411 (514)
T ss_pred -chhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHH--cCCchh
Confidence 4558899999999999999999999999999999999998765 4899999986 6679999999999 999999
Q ss_pred CCCC
Q 000286 321 LPQG 324 (1720)
Q Consensus 321 L~~~ 324 (1720)
+|+-
T Consensus 412 lcdl 415 (514)
T KOG0166|consen 412 LCDL 415 (514)
T ss_pred hhhc
Confidence 9984
No 16
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.93 E-value=2.1e-26 Score=256.97 Aligned_cols=296 Identities=18% Similarity=0.148 Sum_probs=257.7
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
.+.++++|+.+........|++|.|+|.++.+..++++ ..++..|.||.|+++|.+. +.++..+|.|||+||+..++.
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT-kvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT-KVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce-EEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCCchh
Confidence 45678888888544356889999999999999888776 5788999999999999977 589999999999999999999
Q ss_pred chhhhcccccHHHHHHHHhcCCc--HHHHHHHHHHHHHhhccC-c--chhhhcCchhHHhhhhccCChHHHHHHHHHHHH
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEY--MDLAEQSLQALKKISQEH-P--TACLRAGALMAVLSYLDFFSTGVQRVALSTAAN 165 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~--~dl~Eqal~aL~nIS~~~-~--~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsN 165 (1720)
++..|++.|++.+|+ .|+.+.. +.+...+.|+|.|+|+.. | +--.-.-+++.|..++...++++...|+|+++.
T Consensus 191 ~RD~vL~~galeplL-~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSY 269 (526)
T COG5064 191 CRDYVLQCGALEPLL-GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISY 269 (526)
T ss_pred HHHHHHhcCchHHHH-HHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 999999999999999 5555544 588899999999999852 2 322223468889999999999999999999999
Q ss_pred hccCC-CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCC
Q 000286 166 MCKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1720)
Q Consensus 166 lc~~~-~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~ 244 (1720)
+..+. +......-.++.+.|+.+|.|++.+|+.-|+..+.||+.| ++.+.+.+++.|+++.+..||++.
T Consensus 270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG---~D~QTqviI~~G~L~a~~~lLs~~------- 339 (526)
T COG5064 270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG---SDDQTQVIINCGALKAFRSLLSSP------- 339 (526)
T ss_pred hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec---CccceehheecccHHHHHHHhcCh-------
Confidence 99854 4444555578899999999999999999999999999998 999999999999999999999887
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC----cccccccccccCC---CHHHHHHHHHHhhcc
Q 000286 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG----VSANSAVPPALSR---PAEQIFEIVNLANEL 317 (1720)
Q Consensus 245 ~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~----~~~~~~~s~i~~~---~~~qi~~vi~li~~L 317 (1720)
..++...++|.|+||.+|+.++++++|+++++|.|+.+|.... +++||+++|.+.| -+++|..+++ .+.
T Consensus 340 --ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~--qG~ 415 (526)
T COG5064 340 --KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVS--QGF 415 (526)
T ss_pred --hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHH--ccc
Confidence 4579999999999999999999999999999999999998653 5899999997554 5689999999 999
Q ss_pred CCCCCC
Q 000286 318 LPPLPQ 323 (1720)
Q Consensus 318 LP~L~~ 323 (1720)
+-|||+
T Consensus 416 IkpLc~ 421 (526)
T COG5064 416 IKPLCD 421 (526)
T ss_pred hhHHHH
Confidence 999987
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.93 E-value=2.1e-24 Score=293.55 Aligned_cols=378 Identities=17% Similarity=0.145 Sum_probs=296.7
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
.+.++.|+..|++. |+..|.+|++.|..+.... ++....+...|+||.||++|+++.++.+|.+|+|||+||+.++++
T Consensus 188 aGaVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e 265 (2102)
T PLN03200 188 AGGVDILVKLLSSG-NSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKE 265 (2102)
T ss_pred cCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHH
Confidence 56789999999886 9999999999998777654 334567889999999999998766689999999999999999999
Q ss_pred chhhhcccccHHHHHHHHhcCCc---------HHHHHHHHHHHHHhhccCcc-----------------hhhhcCchhHH
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEY---------MDLAEQSLQALKKISQEHPT-----------------ACLRAGALMAV 144 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~---------~dl~Eqal~aL~nIS~~~~~-----------------~Il~~GgL~~L 144 (1720)
++..|++.|+||.|+ +++..+. ..++|+|+|||+|||++... .+...|+|..+
T Consensus 266 ~r~~Iv~aGgIp~LI-~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayl 344 (2102)
T PLN03200 266 AKQAIADAGGIPALI-NATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYA 344 (2102)
T ss_pred HHHHHHHCCCHHHHH-HHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHH
Confidence 999999999999999 7776554 45799999999999996332 12345889999
Q ss_pred hhhhccCChHHH----HHHHHHHHHhccCC-CCchhHHH-------------------hCcHHHHHHhhccCCHHHHHHH
Q 000286 145 LSYLDFFSTGVQ----RVALSTAANMCKKL-PSDAADFV-------------------MEAVPLLTNLLQYHDAKVLEHA 200 (1720)
Q Consensus 145 L~lLd~~~~~vq----r~Al~aLsNlc~~~-~~~~~~~v-------------------~~~lP~L~~LL~~~D~~V~e~A 200 (1720)
+..++......+ ++++|+|.|+|++. +...+..+ .++++.|+.+|...+.++++++
T Consensus 345 l~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~A 424 (2102)
T PLN03200 345 LMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEEL 424 (2102)
T ss_pred HHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHH
Confidence 998886555444 36789999999965 33322222 3567788888888899999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 000286 201 SVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGI 280 (1720)
Q Consensus 201 ~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~ 280 (1720)
||+|.+|+++ +.+..+.+++.|.++.|+++|.+. +..++..++++|++|+.+++++++.++++|+++.
T Consensus 425 v~aL~~L~~~---~~e~~~aIi~~ggIp~LV~LL~s~---------s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 425 IRALSSLCCG---KGGLWEALGGREGVQLLISLLGLS---------SEQQQEYAVALLAILTDEVDESKWAITAAGGIPP 492 (2102)
T ss_pred HHHHHHHhCC---CHHHHHHHHHcCcHHHHHHHHcCC---------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 9999999996 899999999999999999999986 5789999999999999999999999999999999
Q ss_pred HHHhhcCCCc----ccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCC
Q 000286 281 LKDILSGSGV----SANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTN 356 (1720)
Q Consensus 281 L~~LL~~~~~----~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 356 (1720)
|.+||.+.+. .+.|++.|+.. ..+|++.++.
T Consensus 493 LV~LL~s~~~~iqeeAawAL~NLa~-~~~qir~iV~-------------------------------------------- 527 (2102)
T PLN03200 493 LVQLLETGSQKAKEDSATVLWNLCC-HSEDIRACVE-------------------------------------------- 527 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhC-CcHHHHHHHH--------------------------------------------
Confidence 9999986543 45666666543 2344444442
Q ss_pred CCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHh
Q 000286 357 GNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVL 436 (1720)
Q Consensus 357 ~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il 436 (1720)
-...+|.|++++.+. ++.++..++++|.++++..+.+.+.. |..+|
T Consensus 528 -----------------------~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~----------Lv~LL 573 (2102)
T PLN03200 528 -----------------------SAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQ----------LTALL 573 (2102)
T ss_pred -----------------------HCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHH----------HHHHh
Confidence 014567777777664 78899999999999999988887632 34557
Q ss_pred hcCCCchHHhHHHHHHHHHhhCchh--hhhhHHhhcHHHHHHHHHhcC
Q 000286 437 AWKDPHVLIPSLQIAEILMEKLPGT--FSKMFVREGVVHAVDQLILAG 482 (1720)
Q Consensus 437 ~~~d~~lv~~aL~i~~~Ll~K~pd~--f~~~f~REGV~~~I~~L~~~~ 482 (1720)
.+.++.++..+|..+..++.-.... ...--...|.+..+..|..++
T Consensus 574 lsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg 621 (2102)
T PLN03200 574 LGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS 621 (2102)
T ss_pred cCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC
Confidence 7788888888887776665432221 111122357778888887754
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.92 E-value=2.7e-23 Score=282.94 Aligned_cols=395 Identities=15% Similarity=0.105 Sum_probs=314.5
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
.++.||..|... +.+.|..+++.|+.+... +++.++.+...|.+|.||++|+++ +.++|..|+|+|.||+.++++++
T Consensus 405 aik~LV~LL~~~-~~evQ~~Av~aL~~L~~~-~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 405 AKKVLVGLITMA-TADVQEELIRALSSLCCG-KGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred chhhhhhhhccC-CHHHHHHHHHHHHHHhCC-CHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHH
Confidence 355667777776 789999999999776654 455567889999999999999987 59999999999999999999999
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--h-hhhcCchhHHhhhhccCChHHHHHHHHHHHHhccC
Q 000286 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--A-CLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKK 169 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~-Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~ 169 (1720)
..|+++|+||.|+ +||.+++.+++++|+|+|+||+.+..+ . |.++|++++|+.+|+..+..+|+.|+|+|.|++.+
T Consensus 482 ~aIieaGaIP~LV-~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLV-QLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHH-HHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999 999999999999999999999986554 3 55889999999999999999999999999999875
Q ss_pred CCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChh
Q 000286 170 LPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTP 249 (1720)
Q Consensus 170 ~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~ 249 (1720)
.+. +.++.|+.+|.++|++++..++.+|.+|...........+.....|.++.|++||.++ +..
T Consensus 561 ~d~-------~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg---------s~~ 624 (2102)
T PLN03200 561 ADA-------ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS---------KEE 624 (2102)
T ss_pred cch-------hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC---------CHH
Confidence 432 2458899999999999999999999998764212222334445679999999999987 688
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCc----ccccccccccC-CCHHHHHHHHHHhhccCCCCCCC
Q 000286 250 TYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV----SANSAVPPALS-RPAEQIFEIVNLANELLPPLPQG 324 (1720)
Q Consensus 250 i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~----~~~~~~s~i~~-~~~~qi~~vi~li~~LLP~L~~~ 324 (1720)
++..|.++|.++|+++.++.+.++..|+++.|..+|.+... .+.|++.++.. ++.+|+..+++ .+.+|+|++=
T Consensus 625 ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~--~GaV~pL~~L 702 (2102)
T PLN03200 625 TQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAA--EDAIKPLIKL 702 (2102)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHH--cCCHHHHHHH
Confidence 99999999999999999999999999999999999987653 67888777653 57788888888 9999999872
Q ss_pred CCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHH-HHHHHHHHHHHhccCCHHHHHHH
Q 000286 325 TISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFG-MDLLPVLIQIYGSSVNSPVRHKC 403 (1720)
Q Consensus 325 ~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~-~~llP~L~~vy~ss~~~~VR~~~ 403 (1720)
.-+-+ .. -......=...+..+++....+. ...+|.|+++..+. ++.+|+.+
T Consensus 703 L~~~d----------------------~~----v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~k~~A 755 (2102)
T PLN03200 703 AKSSS----------------------IE----VAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG-TLEGKRNA 755 (2102)
T ss_pred HhCCC----------------------hH----HHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC-ChHHHHHH
Confidence 11000 00 00011122234455666666666 58899999998876 68899999
Q ss_pred HHHHHHHhhcCCHHH-HHHhhhccchHHHHHHHhhcCCCchHHh--HHHHHHHHHh
Q 000286 404 LSVIGKLMYFSSAEM-IQSLLSVTNISSFLAGVLAWKDPHVLIP--SLQIAEILME 456 (1720)
Q Consensus 404 L~~l~r~v~~~~~~~-L~~~l~~~~iss~la~il~~~d~~lv~~--aL~i~~~Ll~ 456 (1720)
.++|+.+....+.+. +.+.+....+-.-|..+|...|...+.. ||.....|.+
T Consensus 756 a~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 756 ARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLAR 811 (2102)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHh
Confidence 999999998888765 7665555555555667777777655554 8888777775
No 19
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.1e-16 Score=178.96 Aligned_cols=291 Identities=16% Similarity=0.187 Sum_probs=240.2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
.+..|+.....+ .-..|..|+.++..+.....+. ..+...|.+.+|.++-+++ +.-+|..|..+|.||.. .-+++
T Consensus 127 Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk--~kiA~sGaL~pltrLaksk-dirvqrnatgaLlnmTh-s~EnR 201 (550)
T KOG4224|consen 127 GLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNK--VKIARSGALEPLTRLAKSK-DIRVQRNATGALLNMTH-SRENR 201 (550)
T ss_pred ChHHHHHHhcCC-CcEEEeeehhhhhhhhccccch--hhhhhccchhhhHhhcccc-hhhHHHHHHHHHHHhhh-hhhhh
Confidence 456677777776 6688999999998888875443 3577888999999966666 48899999999999985 45788
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcC--chhHHhhhhccCChHHHHHHHHHHHHhcc
Q 000286 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAG--ALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~G--gL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1720)
+.+|.+|+||.|+ .|+.+.+.++++.|..+++||+.+... .+.+++ .+++|+++++..+..+|..|..++.|++.
T Consensus 202 r~LV~aG~lpvLV-sll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 202 RVLVHAGGLPVLV-SLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS 280 (550)
T ss_pred hhhhccCCchhhh-hhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc
Confidence 9999999999999 999999999999999999999987553 566777 89999999999999999999999999999
Q ss_pred CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCCh
Q 000286 169 KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248 (1720)
Q Consensus 169 ~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~ 248 (1720)
..++.......+.+|.|+.+|+++--..+-....|+.+|+- +|-+--.++++|.+..||.+|...+ +.
T Consensus 281 dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi----hplNe~lI~dagfl~pLVrlL~~~d--------nE 348 (550)
T KOG4224|consen 281 DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI----HPLNEVLIADAGFLRPLVRLLRAGD--------NE 348 (550)
T ss_pred cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc----ccCcccceecccchhHHHHHHhcCC--------ch
Confidence 88777766778999999999998877777788899999998 6777778889999999999999886 78
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCccccccccc---ccCCCHHHHHHHHHHhhccCCCCCC
Q 000286 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPP---ALSRPAEQIFEIVNLANELLPPLPQ 323 (1720)
Q Consensus 249 ~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~---i~~~~~~qi~~vi~li~~LLP~L~~ 323 (1720)
+++..+...|.|++..+......++++|.++.+..|+...+.+....++. .++-+.+--.++++ .+++|.|+.
T Consensus 349 eiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld--~gi~~iLIp 424 (550)
T KOG4224|consen 349 EIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLD--SGIIPILIP 424 (550)
T ss_pred hhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhh--cCCcceeec
Confidence 89999999999999999999999999999999999998665422111111 12223334455566 677776665
No 20
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=4.6e-15 Score=168.27 Aligned_cols=262 Identities=17% Similarity=0.153 Sum_probs=220.8
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p 89 (1720)
+++.+..+...-++. |-..|..|+..|.++.....+. +.++..|.+|.||.+|+.. ++++|..||-+|.||+- ..
T Consensus 165 ~sGaL~pltrLaksk-dirvqrnatgaLlnmThs~EnR--r~LV~aG~lpvLVsll~s~-d~dvqyycttaisnIaV-d~ 239 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSK-DIRVQRNATGALLNMTHSRENR--RVLVHAGGLPVLVSLLKSG-DLDVQYYCTTAISNIAV-DR 239 (550)
T ss_pred hccchhhhHhhcccc-hhhHHHHHHHHHHHhhhhhhhh--hhhhccCCchhhhhhhccC-ChhHHHHHHHHhhhhhh-hH
Confidence 456677777733565 8899999999988777664443 5688999999999999987 59999999999999985 44
Q ss_pred cchhhhcccc--cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhccCChHHHHHHHHHHHH
Q 000286 90 SSCAAVVHYG--AVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAAN 165 (1720)
Q Consensus 90 ~~~~~vV~~G--aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsN 165 (1720)
..+..+++.+ .||.|+ .|+......++.||.-||+||+.+... .|+++|+||.++.+|........-..+.|+.|
T Consensus 240 ~~Rk~Laqaep~lv~~Lv-~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 240 RARKILAQAEPKLVPALV-DLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHHhcccchHHHHH-HHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence 5777888888 999999 999999999999999999999998764 79999999999999998888888889999999
Q ss_pred hccCCCCchhHHHhCcHHHHHHhhccCCHH-HHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCC
Q 000286 166 MCKKLPSDAADFVMEAVPLLTNLLQYHDAK-VLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1720)
Q Consensus 166 lc~~~~~~~~~~v~~~lP~L~~LL~~~D~~-V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~ 244 (1720)
++...-......-.+++..|+.+|...|.+ ++-.|..+|.+|+.+ ...+...+++.|.++++.+|+...
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas---se~n~~~i~esgAi~kl~eL~lD~------- 388 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS---SEHNVSVIRESGAIPKLIELLLDG------- 388 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh---hhhhhHHHhhcCchHHHHHHHhcC-------
Confidence 998655555555678999999999998855 999999999999996 677788999999999999999886
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCc
Q 000286 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV 290 (1720)
Q Consensus 245 ~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1720)
+.+++..+-.|++.++-. ++-...+++.|+++.|+.++.+...
T Consensus 389 --pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~ 431 (550)
T KOG4224|consen 389 --PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESE 431 (550)
T ss_pred --ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccch
Confidence 456788888888888755 4445789999999999998765543
No 21
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.5e-11 Score=152.51 Aligned_cols=289 Identities=16% Similarity=0.139 Sum_probs=198.5
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
.-++.|+..|+.+.++++++.|+++|..++-.. ++....++..+.||.|+.=|.--...++-.++..||-.|.. ++
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR---~H 286 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR---RH 286 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh---hc
Confidence 356778888888889999999999998877765 33445677889999999988755567787888888888875 56
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc----chhhhcCchhHHhhhhccCChHHHHHHHHHHHHhc
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP----TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMC 167 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~----~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1720)
-.+++++|+|-+.+ ..++--.+-.+..|+.+-.|+|..-+ ..|++ +||.|-.+|.+.+......++-|+..+.
T Consensus 287 ~~AiL~AG~l~a~L-sylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 287 PKAILQAGALSAVL-SYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred cHHHHhcccHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 67899999999888 66777778899999999999997532 24554 5888888888888888888888888877
Q ss_pred cCC--CCchhHHH--hCcHHHHHHhhccCCH----HHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCC
Q 000286 168 KKL--PSDAADFV--MEAVPLLTNLLQYHDA----KVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNS 239 (1720)
Q Consensus 168 ~~~--~~~~~~~v--~~~lP~L~~LL~~~D~----~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~ 239 (1720)
.+- ....++.+ .+.|.-...||.-++. .+-......|+.++.+ .+.....+...++..-|..+|....
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~---~pl~~~tl~k~~I~~~L~~il~g~s- 439 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG---SPLLFRTLLKLDIADTLKRILQGYS- 439 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC---ChHHHHHHHHhhHHHHHHHHHhccC-
Confidence 633 23333333 4677777777766542 3344455667777775 7888888888999988888887652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCC
Q 000286 240 GGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLP 319 (1720)
Q Consensus 240 ~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP 319 (1720)
++ + +.... -+...++.....++ ..+..||-- ..+.-|.+-..-.+++++++.++++|
T Consensus 440 ~s-~---nas~~--------~~l~r~Pnel~e~~-----sl~~eLlp~------~p~e~i~~~~~~~~~~~~n~~~~~~~ 496 (1051)
T KOG0168|consen 440 KS-A---NASLH--------ELLSRSPNELYELT-----SLIIELLPC------LPVEGIFAVDCSLIYEIVNLADELLW 496 (1051)
T ss_pred cC-c---ccccc--------cccccCcHHHHHHH-----HHHheeecC------Ccccceeehhhhhhcccccccccccc
Confidence 10 0 10000 11112222211111 122222221 11122333456678889999999999
Q ss_pred CCCCCCCCCCccccc
Q 000286 320 PLPQGTISLPSSSNM 334 (1720)
Q Consensus 320 ~L~~~~~s~~~~~~~ 334 (1720)
+++++..+.++|.+.
T Consensus 497 ~~~d~~~s~~~~~~~ 511 (1051)
T KOG0168|consen 497 QWRDDRGSWHTYTNI 511 (1051)
T ss_pred cCccccccccccchh
Confidence 999988887777654
No 22
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.48 E-value=1.4e-11 Score=158.62 Aligned_cols=372 Identities=19% Similarity=0.227 Sum_probs=276.9
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
.+-++.|+..|.++ +....+.++.-|.++-....+ ...+...|+|+.|+++|..+ +.+++..|.++|.|++- .++
T Consensus 289 ~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~EN--K~~m~~~giV~kL~kLl~s~-~~~l~~~aLrlL~NLSf-d~~ 363 (708)
T PF05804_consen 289 KGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKEN--KDEMAESGIVEKLLKLLPSE-NEDLVNVALRLLFNLSF-DPE 363 (708)
T ss_pred cCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHH--HHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhCc-CHH
Confidence 35677889899876 889999999999766555333 35678899999999999987 58999999999999986 457
Q ss_pred chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhcc-CChHHHHHHHHHHHHhc
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDF-FSTGVQRVALSTAANMC 167 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNlc 167 (1720)
.+..+|+.|+||.|+ .|+..+ ..+.-|+..|.+||.+... .+...++++.++++|-. ....++..+++.+.|||
T Consensus 364 ~R~~mV~~GlIPkLv-~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 364 LRSQMVSLGLIPKLV-ELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHHHHHCCCcHHHH-HHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh
Confidence 888999999999999 787654 5667799999999987553 56677899999998764 56667888999999999
Q ss_pred cCCCCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCC
Q 000286 168 KKLPSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASL 246 (1720)
Q Consensus 168 ~~~~~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~l 246 (1720)
.+........-.+.++.|+.. ++..|+-++ .+|.||+.. ++ ..+..+. +.|..|+.++..++
T Consensus 441 ~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLl----KlIRNiS~h---~~-~~k~~f~-~~i~~L~~~v~~~~-------- 503 (708)
T PF05804_consen 441 LNKRNAQLMCEGNGLQSLMKRALKTRDPLLL----KLIRNISQH---DG-PLKELFV-DFIGDLAKIVSSGD-------- 503 (708)
T ss_pred cCHHHHHHHHhcCcHHHHHHHHHhcccHHHH----HHHHHHHhc---Cc-hHHHHHH-HHHHHHHHHhhcCC--------
Confidence 987766665556789999988 667776554 478888872 43 3444442 57889999988765
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCC
Q 000286 247 STPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTI 326 (1720)
Q Consensus 247 s~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~ 326 (1720)
+.+....|+.+|+|+...+.+-.+.+.+.++++.|..+|.... ...+.+.+++-+++ .+.
T Consensus 504 ~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~------------~~dDl~LE~Vi~~g-tla------- 563 (708)
T PF05804_consen 504 SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGA------------SEDDLLLEVVILLG-TLA------- 563 (708)
T ss_pred cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCC------------CChHHHHHHHHHHH-HHH-------
Confidence 6889999999999999888777777778999999999997332 12345555554322 111
Q ss_pred CCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHH-HHHHHHHHHHHhccC-CHHHHHHHH
Q 000286 327 SLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFG-MDLLPVLIQIYGSSV-NSPVRHKCL 404 (1720)
Q Consensus 327 s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~-~~llP~L~~vy~ss~-~~~VR~~~L 404 (1720)
.+++....++ ..+++.|++++.+.. |-.+=-.++
T Consensus 564 --------------------------------------------~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil 599 (708)
T PF05804_consen 564 --------------------------------------------SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQIL 599 (708)
T ss_pred --------------------------------------------CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHH
Confidence 1233344444 378888888886554 567777889
Q ss_pred HHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHHhhCchhhhhhHHhhcHHHH
Q 000286 405 SVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHA 474 (1720)
Q Consensus 405 ~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~ 474 (1720)
.+.++++.+ ++.-..+++...+...+.-++..++..+--.|=.+..++++--++ |....++|-.-..
T Consensus 600 ~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~-w~~ri~~~kF~~h 666 (708)
T PF05804_consen 600 YVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEE-WAERIRREKFRWH 666 (708)
T ss_pred HHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHH-HHHHhhHHHHHHH
Confidence 999999998 445556778777888888888777776665555555556654433 6666666655444
No 23
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.33 E-value=1.2e-09 Score=140.81 Aligned_cols=339 Identities=18% Similarity=0.235 Sum_probs=243.5
Q ss_pred ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 50 STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 50 ~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
..+...|+|+.||++|..+ +.++...+.++|.+|+- ..++...+.+.|+||.|+ +|+.+++.++.+.++++|.|+|-
T Consensus 284 ~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~-kLl~s~~~~l~~~aLrlL~NLSf 360 (708)
T PF05804_consen 284 LKMVNKGIVSLLVKCLDRE-NEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLL-KLLPSENEDLVNVALRLLFNLSF 360 (708)
T ss_pred HHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHH-HHhcCCCHHHHHHHHHHHHHhCc
Confidence 4577899999999999876 69999999999999985 457888999999999999 99999999999999999999998
Q ss_pred cCcc--hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHH
Q 000286 130 EHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTR 206 (1720)
Q Consensus 130 ~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~ 206 (1720)
+... .+++.|.++.++.+|.. .+.+..|+.++.|+|........-...+++|.|+.+ +..++.++...+.+.+.|
T Consensus 361 d~~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iN 438 (708)
T PF05804_consen 361 DPELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLIN 438 (708)
T ss_pred CHHHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHH
Confidence 8764 79999999999999984 456677999999999977666655667899999998 556678887788888999
Q ss_pred HHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhc
Q 000286 207 IAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286 (1720)
Q Consensus 207 L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~ 286 (1720)
++. ++.+.+.+++.+.++.|+....... + .-.+++|.||+..+.. .+.++. +.+..|..++.
T Consensus 439 La~----~~rnaqlm~~g~gL~~L~~ra~~~~--------D----~lLlKlIRNiS~h~~~-~k~~f~-~~i~~L~~~v~ 500 (708)
T PF05804_consen 439 LAL----NKRNAQLMCEGNGLQSLMKRALKTR--------D----PLLLKLIRNISQHDGP-LKELFV-DFIGDLAKIVS 500 (708)
T ss_pred Hhc----CHHHHHHHHhcCcHHHHHHHHHhcc--------c----HHHHHHHHHHHhcCch-HHHHHH-HHHHHHHHHhh
Confidence 998 7888899998888999998875531 1 2356789999988744 333322 34555555554
Q ss_pred CCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHH
Q 000286 287 GSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSARE 366 (1720)
Q Consensus 287 ~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 366 (1720)
... +.+.+.+++-.+++|-.+ + . .
T Consensus 501 ~~~-------------~ee~~vE~LGiLaNL~~~--~--l-------------------------------------d-- 524 (708)
T PF05804_consen 501 SGD-------------SEEFVVECLGILANLTIP--D--L-------------------------------------D-- 524 (708)
T ss_pred cCC-------------cHHHHHHHHHHHHhcccC--C--c-------------------------------------C--
Confidence 322 345556666544443220 0 0 0
Q ss_pred HhhccCHHHHHHHH--HHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhh--cCCC
Q 000286 367 KLLSDQPELLQQFG--MDLLPVLIQIYGSS-VNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLA--WKDP 441 (1720)
Q Consensus 367 ~~~~~~pe~~~~f~--~~llP~L~~vy~ss-~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~--~~d~ 441 (1720)
..+++ ..++|.|.+..... ...++--+++.++--+. ++++. ..++....+...|..+|. ++|.
T Consensus 525 ---------~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla--~d~~~-A~lL~~sgli~~Li~LL~~kqeDd 592 (708)
T PF05804_consen 525 ---------WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA--SDPEC-APLLAKSGLIPTLIELLNAKQEDD 592 (708)
T ss_pred ---------HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH--CCHHH-HHHHHhCChHHHHHHHHHhhCchH
Confidence 11222 27888888887443 45567777776666555 34444 444444555555666665 3567
Q ss_pred chHHhHHHHHHHHHhhCchhhhhhHHhhcHHHHHHHHHh
Q 000286 442 HVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 480 (1720)
Q Consensus 442 ~lv~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~I~~L~~ 480 (1720)
.+|+..+-+..-|+.. ++.........++...+-.|..
T Consensus 593 E~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~ 630 (708)
T PF05804_consen 593 EIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMH 630 (708)
T ss_pred HHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhc
Confidence 7888877777777755 4444444455666666555554
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.22 E-value=1.1e-08 Score=130.73 Aligned_cols=367 Identities=17% Similarity=0.189 Sum_probs=254.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhh
Q 000286 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAV 95 (1720)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~v 95 (1720)
-|+..|+.. +++....++..|.+++...... ....++.+.|...|.++ ++.++..|+++|.+++.........+
T Consensus 42 ~lf~~L~~~-~~e~v~~~~~iL~~~l~~~~~~----~l~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 42 VLFDCLNTS-NREQVELICDILKRLLSALSPD----SLLPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHhhc-ChHHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 367778766 7777778888888888764322 12567889999999987 59999999999999998887777889
Q ss_pred cccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCC-C
Q 000286 96 VHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP-S 172 (1720)
Q Consensus 96 V~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~-~ 172 (1720)
++.++++.++ .++..++..+++.|+.+|.+|+..... .++..+.+..|..++...+..++..+..++.++|...+ .
T Consensus 116 ~~~~l~~~i~-~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 116 VDNELLPLII-QCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred cCccHHHHHH-HHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999 999999999999999999999987665 47788889999999988677788889999999997543 3
Q ss_pred chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHH
Q 000286 173 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 252 (1720)
Q Consensus 173 ~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~ 252 (1720)
.....-.++++.|...|..+|.-++.+|+-+|..|+. .+...+.+.+.|++++|+++|...+.. | .++.-...
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~----~~~g~~yL~~~gi~~~L~~~l~~~~~d--p-~~~~~~l~ 267 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE----TPHGLQYLEQQGIFDKLSNLLQDSEED--P-RLSSLLLP 267 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc----ChhHHHHHHhCCHHHHHHHHHhccccC--C-cccchhhh
Confidence 3333345799999999999999999999999999999 788899999999999999999876411 2 12223444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccc
Q 000286 253 GLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSS 332 (1720)
Q Consensus 253 ~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~ 332 (1720)
..++..++++..++...-... -.++..|..++.+.+ ......+++-++. |-.
T Consensus 268 g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d--------------~~~~~~A~dtlg~-igs------------ 319 (503)
T PF10508_consen 268 GRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQD--------------PTIREVAFDTLGQ-IGS------------ 319 (503)
T ss_pred hHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCC--------------hhHHHHHHHHHHH-HhC------------
Confidence 556899999987655443222 233344444443322 2222333331110 000
Q ss_pred cccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 000286 333 NMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMY 412 (1720)
Q Consensus 333 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~ 412 (1720)
...-+.-+....++.+..+++. +.+ +..+...++|-.+|.++..|+.
T Consensus 320 ----------------------------t~~G~~~L~~~~~~~~~~~l~~----~~~-~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 320 ----------------------------TVEGKQLLLQKQGPAMKHVLKA----IGD-AIKSGSTELKLRALHALASILT 366 (503)
T ss_pred ----------------------------CHHHHHHHHhhcchHHHHHHHH----HHH-HhcCCchHHHHHHHHHHHHHHh
Confidence 0112222223333333333322 222 3344567899999999999987
Q ss_pred cCCH---HHHHH-------hhhccchHHHHHHHhhcCCCchHHhHHHHHHHHHhh
Q 000286 413 FSSA---EMIQS-------LLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEK 457 (1720)
Q Consensus 413 ~~~~---~~L~~-------~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll~K 457 (1720)
.... +.+.. .+...+...+|-+++.+.-+.+.+.|+.+..-|...
T Consensus 367 ~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 367 SGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred cCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 7654 11211 222244444666666555577777777776666544
No 25
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.14 E-value=1e-09 Score=126.85 Aligned_cols=196 Identities=18% Similarity=0.195 Sum_probs=165.2
Q ss_pred ccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000286 52 FSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1720)
Q Consensus 52 ~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1720)
+...+-+..|+.+|+...+|.+|..|..+|+|.+ +.|.....+.+.|+|+.+. .++..++..++++|+|||.|+|...
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~-~lL~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIG-SLLNDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHH-HHcCCCChHHHHHHHHHHHhcCCCh
Confidence 4555668999999998778999999999999975 4666777888999999999 9999999999999999999999887
Q ss_pred cch-hhhcCchhHHhhhhc--cCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000286 132 PTA-CLRAGALMAVLSYLD--FFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIA 208 (1720)
Q Consensus 132 ~~~-Il~~GgL~~LL~lLd--~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~ 208 (1720)
.+. .++. .+..++..+- ..+..+|..++.+|.|++...... ..+...+|.|..+|...+.++..+++++|.+|+
T Consensus 86 en~~~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~--~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 86 ENQEQIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH--HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hhHHHHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh--hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 763 3333 4666666443 247899999999999998754443 346779999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcC
Q 000286 209 EAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG 264 (1720)
Q Consensus 209 ~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~ 264 (1720)
. +++....++.++++..++.|+.... +.++...+|.++.||..+
T Consensus 163 ~----np~~~~~Ll~~q~~~~~~~Lf~~~~--------~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 E----NPDMTRELLSAQVLSSFLSLFNSSE--------SKENLLRVLTFFENINEN 206 (254)
T ss_pred c----CHHHHHHHHhccchhHHHHHHccCC--------ccHHHHHHHHHHHHHHHh
Confidence 9 8999999999999999999998763 567888899999888543
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.10 E-value=4.1e-10 Score=114.85 Aligned_cols=115 Identities=25% Similarity=0.318 Sum_probs=106.0
Q ss_pred ccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000286 52 FSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1720)
Q Consensus 52 ~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1720)
+...|+++.|+++|.+. +++++..|+++|.|++...++....+++.|++|.|+ +++..++..+++.|+|+|.||+...
T Consensus 3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~-~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALV-QLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHH-HHHhCCCHHHHHHHHHHHHHHccCc
Confidence 55778999999999977 499999999999999999899999999999999999 8899999999999999999999887
Q ss_pred cc---hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhcc
Q 000286 132 PT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 132 ~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1720)
+. .+.+.|+++.++.+|+..+..+++.|+|++.|+|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 54 47789999999999999999999999999999983
No 27
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.3e-08 Score=116.05 Aligned_cols=263 Identities=14% Similarity=0.127 Sum_probs=212.2
Q ss_pred hHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC---
Q 000286 13 RLKKILSGLR-ADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL--- 88 (1720)
Q Consensus 13 ~l~~Ll~~L~-s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~--- 88 (1720)
.+.-+|..|. +.++.+.-...++.+.+...| ++...+.|...++.|.+...|..+.-..+..+++|++.-|.-..
T Consensus 146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~-hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiR 224 (461)
T KOG4199|consen 146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIM-HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIR 224 (461)
T ss_pred cHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCcee
Confidence 3455566663 223678888888888766665 45555678888999999978876654578889999999987432
Q ss_pred ------CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc--chhhhcCchhHHhhhhccCCh----HHH
Q 000286 89 ------PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP--TACLRAGALMAVLSYLDFFST----GVQ 156 (1720)
Q Consensus 89 ------p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~--~~Il~~GgL~~LL~lLd~~~~----~vq 156 (1720)
.++...++..|+..+|++.|..-.++++......+|.-|+.+.. +.|.+.|||..|+..++..+. ..-
T Consensus 225 V~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~ 304 (461)
T KOG4199|consen 225 VVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLA 304 (461)
T ss_pred eecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence 24566788889999999777777789999999999999997665 479999999999999986433 355
Q ss_pred HHHHHHHHHhccCCCCchhHHHhCcHHHHHHh-hcc-CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhh
Q 000286 157 RVALSTAANMCKKLPSDAADFVMEAVPLLTNL-LQY-HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLI 234 (1720)
Q Consensus 157 r~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~L-L~~-~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL 234 (1720)
+.++..+.-++.+....+..+.++.+|.|+.+ ++| +|+.|++.+|.|++.||-. .|++-..+++.|.-...++-|
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR---~pdhsa~~ie~G~a~~avqAm 381 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLR---SPDHSAKAIEAGAADLAVQAM 381 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhc---CcchHHHHHhcchHHHHHHHH
Confidence 67889999999888888877788999999999 444 5799999999999999996 999999999999999999988
Q ss_pred cCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhc
Q 000286 235 STSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286 (1720)
Q Consensus 235 ~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~ 286 (1720)
..-. ....++..+.+++.||+..+.+....++..|+=..|.+...
T Consensus 382 kahP-------~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~ 426 (461)
T KOG4199|consen 382 KAHP-------VAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKA 426 (461)
T ss_pred HhCc-------HHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHh
Confidence 7542 25679999999999999999999999999997666655443
No 28
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.01 E-value=1.2e-08 Score=128.72 Aligned_cols=266 Identities=22% Similarity=0.207 Sum_probs=205.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc-
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS- 90 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~- 90 (1720)
-.+++.+..|.+. ++.+|-.|...| +.++.+++.....+-.-|.||.||.+|.+. +.++|..|||||.||.-+...
T Consensus 233 ~~lpe~i~mL~~q-~~~~qsnaaayl-QHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~ 309 (717)
T KOG1048|consen 233 PTLPEVISMLMSQ-DPSVQSNAAAYL-QHLCFGDNKIKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTD 309 (717)
T ss_pred cccHHHHHHHhcc-ChhhhHHHHHHH-HHHHhhhHHHHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCc
Confidence 3578889999887 999999998888 888888776656677889999999999987 699999999999999988766
Q ss_pred -chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC------------------------------c-----c-
Q 000286 91 -SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH------------------------------P-----T- 133 (1720)
Q Consensus 91 -~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~------------------------------~-----~- 133 (1720)
..-.|.+++.||.|+..|-.+.+.+++|++.-+|-|++... + .
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccce
Confidence 77789999999999955555789999999999999886540 1 0
Q ss_pred ------hhh----------------hcCchhHHhhhhc------cCChHHHHHHHHHHHH--------------------
Q 000286 134 ------ACL----------------RAGALMAVLSYLD------FFSTGVQRVALSTAAN-------------------- 165 (1720)
Q Consensus 134 ------~Il----------------~~GgL~~LL~lLd------~~~~~vqr~Al~aLsN-------------------- 165 (1720)
-++ -.|.|.+|+.++. ..+....++|+.++.|
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 011 1355666666663 1223333444444444
Q ss_pred ----------------------------------------------------------------------------hccC
Q 000286 166 ----------------------------------------------------------------------------MCKK 169 (1720)
Q Consensus 166 ----------------------------------------------------------------------------lc~~ 169 (1720)
++..
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 4332
Q ss_pred CCCch------hHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCC
Q 000286 170 LPSDA------ADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQ 243 (1720)
Q Consensus 170 ~~~~~------~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~ 243 (1720)
..... +...+.++|.|+.+|+.+|..|+..++.+|.||+.. -..+.++..++++.|++.|.... +.
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d-----~rnk~ligk~a~~~lv~~Lp~~~---~~ 621 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD-----IRNKELIGKYAIPDLVRCLPGSG---PS 621 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC-----chhhhhhhcchHHHHHHhCcCCC---CC
Confidence 21111 112234679999999999999999999999999973 34555666889999999998763 34
Q ss_pred CCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000286 244 ASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1720)
Q Consensus 244 ~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1720)
..++.++...++.+|-+|.+.+...+..+++.+.++.|+-|..+.
T Consensus 622 ~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~ 666 (717)
T KOG1048|consen 622 TSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQ 666 (717)
T ss_pred cCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhccc
Confidence 678899999999999999999999999999999999999988773
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.95 E-value=6.5e-08 Score=123.62 Aligned_cols=252 Identities=21% Similarity=0.207 Sum_probs=204.3
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
+-+..++..|... ...++++.++...+.... +...-..+.+..+|+.. +.+.-..+|.+|..+.....
T Consensus 3 ~~~~~~l~~l~~~---~~~~~~L~~l~~~~~~~~------~l~~~~~~~lf~~L~~~-~~e~v~~~~~iL~~~l~~~~-- 70 (503)
T PF10508_consen 3 EWINELLEELSSK---AERLEALPELKTELSSSP------FLERLPEPVLFDCLNTS-NREQVELICDILKRLLSALS-- 70 (503)
T ss_pred hHHHHHHHHHhcc---cchHHHHHHHHHHHhhhh------HHHhchHHHHHHHHhhc-ChHHHHHHHHHHHHHHhccC--
Confidence 3467788888765 456677777766555432 11222234488899865 57777899999999998542
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhcc
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1720)
...+ ..+..+.|. ..|.++++.|++.|+++|++++++... .+.+.+.++.++..|...+..+...|+.++.+++.
T Consensus 71 ~~~l-~~~~~~~L~-~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 71 PDSL-LPQYQPFLQ-RGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS 148 (503)
T ss_pred HHHH-HHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC
Confidence 2222 456777777 999999999999999999999987654 47789999999999999999999999999999998
Q ss_pred CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCCh
Q 000286 169 KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248 (1720)
Q Consensus 169 ~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~ 248 (1720)
.........-.+.++.|..++...+..+.-.++.++.+|+.. +++..+.+.+.|+++.++..|... +.
T Consensus 149 ~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~---S~~~~~~~~~sgll~~ll~eL~~d---------Di 216 (503)
T PF10508_consen 149 HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH---SPEAAEAVVNSGLLDLLLKELDSD---------DI 216 (503)
T ss_pred CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc---CHHHHHHHHhccHHHHHHHHhcCc---------cH
Confidence 655444333456799999999988888888899999999985 999999999999999999999885 56
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCc
Q 000286 249 PTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV 290 (1720)
Q Consensus 249 ~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1720)
-++..++.+|..||. ++...+.|.+.|+++.|..+|.+...
T Consensus 217 Lvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 217 LVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhcccc
Confidence 789999999999999 77788999999999999999987654
No 30
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.92 E-value=2.5e-08 Score=115.45 Aligned_cols=197 Identities=16% Similarity=0.114 Sum_probs=160.5
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p 89 (1720)
.+..++.|+..|+...||.+|..|+..+++......++ ..+...|.++.+..+|..+ ++.++..|.+||.|++....
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq--~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQ--DIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHH--HHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChh
Confidence 45689999999997779999999999999876554333 3466779999999999987 59999999999999986543
Q ss_pred cchhhhcccccHHHHHHHHhcCC-cHHHHHHHHHHHHHhhccCcc-hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhc
Q 000286 90 SSCAAVVHYGAVTCFVARLLTIE-YMDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMC 167 (1720)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~-~~dl~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1720)
....+- -.|+.+|..+...+ +.+++..++.+|.|++..... .++ .+.++.++.+|...+..+|.++++++.|++
T Consensus 87 -n~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 -NQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred -hHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 333332 36889995555543 689999999999999876543 344 457999999999999999999999999999
Q ss_pred cCCCCchhHHHhCcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCC
Q 000286 168 KKLPSDAADFVMEAVPLLTNLLQYH-DAKVLEHASVCLTRIAEAFAS 213 (1720)
Q Consensus 168 ~~~~~~~~~~v~~~lP~L~~LL~~~-D~~V~e~A~~aLs~L~~~~~~ 213 (1720)
.+..........++++.|..+++.. +.+++..+++.+.||.++++.
T Consensus 163 ~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 163 ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 9876656566678999999998875 789999999999999988643
No 31
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.87 E-value=1.8e-08 Score=102.75 Aligned_cols=118 Identities=26% Similarity=0.273 Sum_probs=103.3
Q ss_pred hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHh-CcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC
Q 000286 134 ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVM-EAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFA 212 (1720)
Q Consensus 134 ~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~-~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~ 212 (1720)
.+++.|+++.++.+|.+.+..++..++|++.|+|...+......+. +++|.|..+|.++|++++..|+|+|++|+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~-- 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG-- 79 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC--
Confidence 3678899999999999888899999999999999975444434444 9999999999999999999999999999996
Q ss_pred CCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000286 213 SSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1720)
Q Consensus 213 ~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas 263 (1720)
.+...+.+++.|+++.|+++|... +..++..++++|.+||.
T Consensus 80 -~~~~~~~~~~~g~l~~l~~~l~~~---------~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 -PEDNKLIVLEAGGVPKLVNLLDSS---------NEDIQKNATGALSNLAS 120 (120)
T ss_pred -cHHHHHHHHHCCChHHHHHHHhcC---------CHHHHHHHHHHHHHhhC
Confidence 678888899999999999999875 57899999999999974
No 32
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1e-07 Score=108.99 Aligned_cols=276 Identities=12% Similarity=0.103 Sum_probs=216.0
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhccCCcchhhhcccc
Q 000286 21 LRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE-SNPDIMLLAARALTHLCDVLPSSCAAVVHYG 99 (1720)
Q Consensus 21 L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~-~~~eiq~~AaraLtNL~~~~p~~~~~vV~~G 99 (1720)
|.+..|...-+.+|..|..+... .++ +........++.+|... ++.++-....+++..-|-..--.++.+++.+
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~-qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~ 189 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHK-QPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK 189 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcC-Ccc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 34555788888999999665554 333 44556677788888632 3567777777777777777667788899999
Q ss_pred cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc------------chhhhcCchhHHhhhhc-cCChHHHHHHHHHHHHh
Q 000286 100 AVTCFVARLLTIEYMDLAEQSLQALKKISQEHP------------TACLRAGALMAVLSYLD-FFSTGVQRVALSTAANM 166 (1720)
Q Consensus 100 aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~------------~~Il~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNl 166 (1720)
+.|.+.+-|......++.....|++.-+-.+.. ..|.+.|++..|+..+. +.++.+...++.++..+
T Consensus 190 il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l 269 (461)
T KOG4199|consen 190 ILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKAL 269 (461)
T ss_pred HHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHH
Confidence 999999778777777898999999999975422 36899999999999887 55788999999999988
Q ss_pred ccCCCCchhHHHhCcHHHHHHhhcc-CCH---HHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCC
Q 000286 167 CKKLPSDAADFVMEAVPLLTNLLQY-HDA---KVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGG 242 (1720)
Q Consensus 167 c~~~~~~~~~~v~~~lP~L~~LL~~-~D~---~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~ 242 (1720)
+-+.+.-......+.+.+|..++.. .+. .....+|..|..|+. +++....+++.|.++.++.++..-.
T Consensus 270 AVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG----~DsvKs~IV~~gg~~~ii~l~~~h~---- 341 (461)
T KOG4199|consen 270 AVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG----SDSVKSTIVEKGGLDKIITLALRHS---- 341 (461)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC----CCchHHHHHHhcChHHHHHHHHHcC----
Confidence 8776666666677899999999876 343 355677777777776 7889999999999999999986431
Q ss_pred CCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCc------ccccccccccCCCHHHHHHHHH
Q 000286 243 QASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV------SANSAVPPALSRPAEQIFEIVN 312 (1720)
Q Consensus 243 ~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~------~~~~~~s~i~~~~~~qi~~vi~ 312 (1720)
-++.++..++.+++.||-.+|+.+..+++.|+.....+.+...+. .++|.+-|++.++.++-.-++.
T Consensus 342 ---~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~ 414 (461)
T KOG4199|consen 342 ---DDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA 414 (461)
T ss_pred ---CChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh
Confidence 278899999999999999999999999999999999999986653 5567776766666666555554
No 33
>PRK09687 putative lyase; Provisional
Probab=98.46 E-value=5.4e-06 Score=98.16 Aligned_cols=212 Identities=15% Similarity=0.081 Sum_probs=158.6
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
-.++.|+..|.+. |..++..|+..|.++ ....+++.+..++.++ ++.++..|+|+|+.|-... .
T Consensus 23 ~~~~~L~~~L~d~-d~~vR~~A~~aL~~~------------~~~~~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~--~ 86 (280)
T PRK09687 23 LNDDELFRLLDDH-NSLKRISSIRVLQLR------------GGQDVFRLAIELCSSK-NPIERDIGADILSQLGMAK--R 86 (280)
T ss_pred ccHHHHHHHHhCC-CHHHHHHHHHHHHhc------------CcchHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCc--c
Confidence 3577888888776 999999999998643 1234678888888876 6999999999999985421 1
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCC
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP 171 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~ 171 (1720)
. ..-++|.|...++..++..|+..|+.+|++++...... ....+..+...+...+..+++.|++++.++.
T Consensus 87 ~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~---- 156 (280)
T PRK09687 87 C----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVIN---- 156 (280)
T ss_pred c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----
Confidence 1 22477888844578889999999999999996543311 1224455666666778899999999997653
Q ss_pred CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHH
Q 000286 172 SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTY 251 (1720)
Q Consensus 172 ~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~ 251 (1720)
-..+++.|..+|..+|..|...|+.+|..+... ++ .+++.|+.+|... +..++
T Consensus 157 ------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---~~---------~~~~~L~~~L~D~---------~~~VR 209 (280)
T PRK09687 157 ------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD---NP---------DIREAFVAMLQDK---------NEEIR 209 (280)
T ss_pred ------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---CH---------HHHHHHHHHhcCC---------ChHHH
Confidence 134899999999999999999999999998432 22 3566788888765 57899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcC
Q 000286 252 TGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSG 287 (1720)
Q Consensus 252 ~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~ 287 (1720)
..+++.|+.+- ++ .+++.|...|..
T Consensus 210 ~~A~~aLg~~~--~~---------~av~~Li~~L~~ 234 (280)
T PRK09687 210 IEAIIGLALRK--DK---------RVLSVLIKELKK 234 (280)
T ss_pred HHHHHHHHccC--Ch---------hHHHHHHHHHcC
Confidence 99999999853 33 245677777764
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=98.45 E-value=0.00013 Score=96.18 Aligned_cols=372 Identities=13% Similarity=0.153 Sum_probs=197.1
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p 89 (1720)
+.+++.+|-+.|++. |...+.+|++.+=.+..++. ....+.+..++++... +.+++....-.|.++++..|
T Consensus 30 ~kge~~ELr~~L~s~-~~~~kk~alKkvIa~mt~G~-------DvS~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~p 100 (746)
T PTZ00429 30 RRGEGAELQNDLNGT-DSYRKKAAVKRIIANMTMGR-------DVSYLFVDVVKLAPST-DLELKKLVYLYVLSTARLQP 100 (746)
T ss_pred ccchHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCC-------CchHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccCh
Confidence 466889999999887 78888888887766665553 2334566667777655 47777777777777776666
Q ss_pred cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccC
Q 000286 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKK 169 (1720)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~ 169 (1720)
+..-. +|..|. +=+..+++-++-.|+.+|++|-... +++ -.+.++.+.|.+.++.|.+.|+.|+.++.+.
T Consensus 101 elalL-----aINtl~-KDl~d~Np~IRaLALRtLs~Ir~~~---i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 101 EKALL-----AVNTFL-QDTTNSSPVVRALAVRTMMCIRVSS---VLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HHHHH-----HHHHHH-HHcCCCCHHHHHHHHHHHHcCCcHH---HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 54322 344555 4455566666666666666664311 111 2344455555566666666666666666654
Q ss_pred CCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHH--------------------------Hh
Q 000286 170 LPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDEL--------------------------CN 223 (1720)
Q Consensus 170 ~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~l--------------------------i~ 223 (1720)
.+. .....+.++.|..+|...|+.|+.+|+.+|..|... .+..+... ..
T Consensus 171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~---~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY---GSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA 245 (746)
T ss_pred Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Confidence 432 123444556666666666666666666666666543 11111110 00
Q ss_pred ---------CCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHhhcCCCcccc
Q 000286 224 ---------HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS-PLCAKTLLHLGISGILKDILSGSGVSAN 293 (1720)
Q Consensus 224 ---------~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s-~~~t~~Ll~~gil~~L~~LL~~~~~~~~ 293 (1720)
..++..+...|.+. ++.++..+++++.++.... ++....++. .+...|..|+.++....-
T Consensus 246 y~P~~~~e~~~il~~l~~~Lq~~---------N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~ss~~eiqy 315 (746)
T PTZ00429 246 QRPSDKESAETLLTRVLPRMSHQ---------NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLSRRDAETQY 315 (746)
T ss_pred cCCCCcHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhhCCCccHHH
Confidence 12455555555554 5678888888888887543 333222221 122445555433221110
Q ss_pred cccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhc--c
Q 000286 294 SAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLS--D 371 (1720)
Q Consensus 294 ~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~ 371 (1720)
..+ ..|.+|...-|.+....+ ...|.+- ..| . -....+.+++. .
T Consensus 316 vaL------------r~I~~i~~~~P~lf~~~~-----~~Ff~~~----~Dp------------~-yIK~~KLeIL~~La 361 (746)
T PTZ00429 316 IVC------------KNIHALLVIFPNLLRTNL-----DSFYVRY----SDP------------P-FVKLEKLRLLLKLV 361 (746)
T ss_pred HHH------------HHHHHHHHHCHHHHHHHH-----Hhhhccc----CCc------------H-HHHHHHHHHHHHHc
Confidence 111 001112222232221100 0000000 000 0 01112222221 1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHH
Q 000286 372 QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIA 451 (1720)
Q Consensus 372 ~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~ 451 (1720)
+++=+..++++| . -|...++..+|++++.+|.++..-. +.... .+-.+|..++..+.. ++..++..+
T Consensus 362 ne~Nv~~IL~EL----~-eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~------~cV~~Ll~ll~~~~~-~v~e~i~vi 428 (746)
T PTZ00429 362 TPSVAPEILKEL----A-EYASGVDMVFVVEVVRAIASLAIKV-DSVAP------DCANLLLQIVDRRPE-LLPQVVTAA 428 (746)
T ss_pred CcccHHHHHHHH----H-HHhhcCCHHHHHHHHHHHHHHHHhC-hHHHH------HHHHHHHHHhcCCch-hHHHHHHHH
Confidence 222233333333 2 3777899999999999999976432 22222 233445555544333 566788889
Q ss_pred HHHHhhCchhh
Q 000286 452 EILMEKLPGTF 462 (1720)
Q Consensus 452 ~~Ll~K~pd~f 462 (1720)
+.|++|.|+.|
T Consensus 429 k~IlrkyP~~~ 439 (746)
T PTZ00429 429 KDIVRKYPELL 439 (746)
T ss_pred HHHHHHCccHH
Confidence 99999999853
No 35
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=1.9e-06 Score=112.53 Aligned_cols=231 Identities=17% Similarity=0.131 Sum_probs=175.9
Q ss_pred ccccccCcHHHHHHhhcCC-----------CCHHHHHHHHHHHHHhhccCCcchhh-hcccccHHHHHHHHhcCCcHHHH
Q 000286 50 STFSVDSFAPVLVGLLNHE-----------SNPDIMLLAARALTHLCDVLPSSCAA-VVHYGAVTCFVARLLTIEYMDLA 117 (1720)
Q Consensus 50 ~~~~~~g~Vp~LV~lL~~~-----------~~~eiq~~AaraLtNL~~~~p~~~~~-vV~~GaVp~Lv~kLL~~~~~dl~ 117 (1720)
..+-.-|.+.++-+||.-. .+..+...|..+||||.=|.-.+... .-..|.+.++| .-|.+...+|.
T Consensus 333 ~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavV-AQL~s~peeL~ 411 (2195)
T KOG2122|consen 333 HAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVV-AQLISAPEELL 411 (2195)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHH-HHHhcChHHHH
Confidence 4555667777666666521 13457789999999999877655554 34779999999 66666667888
Q ss_pred HHHHHHHHHhhccCc---chhh-hcCchhHHhhhhc-cCChHHHHHHHHHHHHhccCC--CCchhHHHhCcHHHHHHhhc
Q 000286 118 EQSLQALKKISQEHP---TACL-RAGALMAVLSYLD-FFSTGVQRVALSTAANMCKKL--PSDAADFVMEAVPLLTNLLQ 190 (1720)
Q Consensus 118 Eqal~aL~nIS~~~~---~~Il-~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNlc~~~--~~~~~~~v~~~lP~L~~LL~ 190 (1720)
.-...+|.||+=+-. +.++ +.|-+.+|....- .......+..+.+|.||..+. ....|-.+-+++-.|+..|.
T Consensus 412 QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LS 491 (2195)
T KOG2122|consen 412 QVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLS 491 (2195)
T ss_pred HHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhcc
Confidence 888899999984322 3455 5677777766543 334455666666677776633 33455567899999999998
Q ss_pred cC----CHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCH
Q 000286 191 YH----DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSP 266 (1720)
Q Consensus 191 ~~----D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~ 266 (1720)
+. --.|+++|--.|.|+..-.....++.|.+.++.+|..|+++|.+. +..++..++.+|.||...++
T Consensus 492 Y~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~---------SLTiVSNaCGTLWNLSAR~p 562 (2195)
T KOG2122|consen 492 YEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH---------SLTIVSNACGTLWNLSARSP 562 (2195)
T ss_pred ccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc---------ceEEeecchhhhhhhhcCCH
Confidence 77 357899888888777665555788999999999999999999886 56688899999999999999
Q ss_pred HHHHHHHHcCChHHHHHhhcCCCc
Q 000286 267 LCAKTLLHLGISGILKDILSGSGV 290 (1720)
Q Consensus 267 ~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1720)
+-.+.|.+.|+++.|..|+.+..+
T Consensus 563 ~DQq~LwD~gAv~mLrnLIhSKhk 586 (2195)
T KOG2122|consen 563 EDQQMLWDDGAVPMLRNLIHSKHK 586 (2195)
T ss_pred HHHHHHHhcccHHHHHHHHhhhhh
Confidence 999999999999999999987654
No 36
>PRK09687 putative lyase; Provisional
Probab=98.37 E-value=8.7e-06 Score=96.41 Aligned_cols=208 Identities=12% Similarity=0.023 Sum_probs=155.3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
.+..+...+++. |+..+..|++.|+++=. .+. .....++.|..++..+.++.++..|+.+|+++....+..
T Consensus 55 ~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~---~~~----~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~- 125 (280)
T PRK09687 55 VFRLAIELCSSK-NPIERDIGADILSQLGM---AKR----CQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY- 125 (280)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHhcCC---Ccc----chHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-
Confidence 344455544555 99999999999988422 110 133578899988655557999999999999996533211
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCC
Q 000286 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPS 172 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~ 172 (1720)
..-++..|. .++..++..|+..++++|++|.. ..+++.|+.+|...+..+...|+.+|.+++..
T Consensus 126 ----~~~a~~~l~-~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--- 189 (280)
T PRK09687 126 ----SPKIVEQSQ-ITAFDKSTNVRFAVAFALSVIND--------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--- 189 (280)
T ss_pred ----chHHHHHHH-HHhhCCCHHHHHHHHHHHhccCC--------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---
Confidence 122556666 77778899999999999988753 23789999999988889999999999998422
Q ss_pred chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHH
Q 000286 173 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 252 (1720)
Q Consensus 173 ~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~ 252 (1720)
...+++.|..+|...|..|...|.++|.++-+. .+++.|++.|...+ +..
T Consensus 190 -----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~--------------~av~~Li~~L~~~~-----------~~~ 239 (280)
T PRK09687 190 -----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK--------------RVLSVLIKELKKGT-----------VGD 239 (280)
T ss_pred -----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh--------------hHHHHHHHHHcCCc-----------hHH
Confidence 125789999999999999999999999987652 47889999997652 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhc
Q 000286 253 GLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286 (1720)
Q Consensus 253 ~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~ 286 (1720)
.++.+|+.|-. + ..++.|.+++.
T Consensus 240 ~a~~ALg~ig~--~---------~a~p~L~~l~~ 262 (280)
T PRK09687 240 LIIEAAGELGD--K---------TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhcCC--H---------hHHHHHHHHHh
Confidence 78888888754 2 24567777775
No 37
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.34 E-value=2e-06 Score=109.19 Aligned_cols=198 Identities=18% Similarity=0.237 Sum_probs=161.9
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc----
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP---- 132 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~---- 132 (1720)
=+|..+.+|.+. ++.+|..|+--|-.+|-+.......|-+.|.||.|| .|+.+...+|+.||+|||.|+.-...
T Consensus 234 ~lpe~i~mL~~q-~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv-~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQ-DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLV-ALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhcc-ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHH-HHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 488999999876 599999999999999998888888888999999999 99999999999999999999974322
Q ss_pred c-hhhhcCchhHHhhhhcc-CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc--cC------------CHHH
Q 000286 133 T-ACLRAGALMAVLSYLDF-FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ--YH------------DAKV 196 (1720)
Q Consensus 133 ~-~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~--~~------------D~~V 196 (1720)
+ +|-+++|++.++.+|.. .+.+++..+.-++.||..+ +.-...++..++++|...+. +. +..|
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence 2 69999999999999986 6889999999999999987 44555678889999988742 22 5789
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhC-CcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000286 197 LEHASVCLTRIAEAFASSPDKLDELCNH-GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1720)
Q Consensus 197 ~e~A~~aLs~L~~~~~~~~~~~~~li~~-gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas 263 (1720)
..++..||.|+... ..+..+.+-+. |+|..|+..+.+.-. -...+...+..|+-+|.|+.-
T Consensus 391 f~n~tgcLRNlSs~---~~eaR~~mr~c~GLIdaL~~~iq~~i~---~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSA---GQEAREQMRECDGLIDALLFSIQTAIQ---KSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred eehhhhhhccccch---hHHHHHHHhhccchHHHHHHHHHHHHH---hccccchhHHHHHHHHhhcCc
Confidence 99999999999985 67777777765 899999998874210 111345567788888888753
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.32 E-value=6.8e-05 Score=97.12 Aligned_cols=233 Identities=21% Similarity=0.218 Sum_probs=169.7
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
++.++++..+ .+...+.+++..|--+...+.+ ...+.+..++++.+. +..++..+--++..+....++..
T Consensus 8 el~~~~~~~~--~~~~~~~~~l~kli~~~~~G~~-------~~~~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~~~~ 77 (526)
T PF01602_consen 8 ELAKILNSFK--IDISKKKEALKKLIYLMMLGYD-------ISFLFMEVIKLISSK-DLELKRLGYLYLSLYLHEDPELL 77 (526)
T ss_dssp HHHHHHHCSS--THHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSS-SHHHHHHHHHHHHHHTTTSHHHH
T ss_pred HHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCC-------CchHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhcchhHH
Confidence 3444444444 2778888998888777666542 336788899999855 69999988889999988777633
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCC
Q 000286 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPS 172 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~ 172 (1720)
.. ++..|. +=+.++++.++..|+.+|++|+. ..++ .-.++.+..++.+.++.++++|+-++..+++..+.
T Consensus 78 ~l-----~~n~l~-kdl~~~n~~~~~lAL~~l~~i~~---~~~~-~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~ 147 (526)
T PF01602_consen 78 IL-----IINSLQ-KDLNSPNPYIRGLALRTLSNIRT---PEMA-EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD 147 (526)
T ss_dssp HH-----HHHHHH-HHHCSSSHHHHHHHHHHHHHH-S---HHHH-HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC
T ss_pred HH-----HHHHHH-HhhcCCCHHHHHHHHhhhhhhcc---cchh-hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH
Confidence 33 566777 66788999999999999999982 2233 23678888999999999999999999999986432
Q ss_pred chhHHHhC-cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHH
Q 000286 173 DAADFVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTY 251 (1720)
Q Consensus 173 ~~~~~v~~-~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~ 251 (1720)
.+.. .+|.|..+|...|+.|+..|+.++..+ .. ++.... -+-..++..|.+++... ++-.+
T Consensus 148 ----~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~---~~~~~~-~~~~~~~~~L~~~l~~~---------~~~~q 209 (526)
T PF01602_consen 148 ----LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KC---NDDSYK-SLIPKLIRILCQLLSDP---------DPWLQ 209 (526)
T ss_dssp ----CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HC---THHHHT-THHHHHHHHHHHHHTCC---------SHHHH
T ss_pred ----HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-cc---Ccchhh-hhHHHHHHHhhhccccc---------chHHH
Confidence 2233 699999999999999999999999999 31 332222 12223456666666544 67899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhc
Q 000286 252 TGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286 (1720)
Q Consensus 252 ~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~ 286 (1720)
..++++|..++...+..... ..+++.+..+|.
T Consensus 210 ~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~ 241 (526)
T PF01602_consen 210 IKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQ 241 (526)
T ss_dssp HHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCChhhhhH---HHHHHHHHHHhh
Confidence 99999999999988877632 344556777666
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.28 E-value=4.4e-05 Score=98.87 Aligned_cols=215 Identities=20% Similarity=0.178 Sum_probs=137.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhh
Q 000286 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAA 94 (1720)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~ 94 (1720)
..+.+.|++. |+..+..|++.|+.+... + ....+++.+.++|.++ ++.++..|+-|+..+....|+....
T Consensus 82 n~l~kdl~~~-n~~~~~lAL~~l~~i~~~---~-----~~~~l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~~~~~ 151 (526)
T PF01602_consen 82 NSLQKDLNSP-NPYIRGLALRTLSNIRTP---E-----MAEPLIPDVIKLLSDP-SPYVRKKAALALLKIYRKDPDLVED 151 (526)
T ss_dssp HHHHHHHCSS-SHHHHHHHHHHHHHH-SH---H-----HHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCHCCHHG
T ss_pred HHHHHhhcCC-CHHHHHHHHhhhhhhccc---c-----hhhHHHHHHHHHhcCC-chHHHHHHHHHHHHHhccCHHHHHH
Confidence 3444555555 777777777777775521 1 1233677778888766 4788888888888887766643221
Q ss_pred hcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch--hhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCC
Q 000286 95 VVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA--CLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPS 172 (1720)
Q Consensus 95 vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~--Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~ 172 (1720)
. .++.|. +|+...++.+...|+.+|..| ...+.. -+-...+..+.+++...++-.|..++.++.+++...+.
T Consensus 152 ---~-~~~~l~-~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 152 ---E-LIPKLK-QLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp ---G-HHHHHH-HHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred ---H-HHHHHh-hhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 1 467777 777777788888888888888 222222 12223344444444567777788888888877764322
Q ss_pred chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHH
Q 000286 173 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 252 (1720)
Q Consensus 173 ~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~ 252 (1720)
.... ..+++.+..+|++.+..|+-.|+.++..+.. .+... ..+++.|+.+|.+. +.+++.
T Consensus 226 ~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~----~~~~~-----~~~~~~L~~lL~s~---------~~nvr~ 285 (526)
T PF01602_consen 226 DADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP----SPELL-----QKAINPLIKLLSSS---------DPNVRY 285 (526)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----SHHHH-----HHHHHHHHHHHTSS---------SHHHHH
T ss_pred hhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhc----chHHH-----HhhHHHHHHHhhcc---------cchheh
Confidence 2211 5577777777777778888888888777766 33312 23467777777754 566777
Q ss_pred HHHHHHHHHhcCC
Q 000286 253 GLIRLLSTCASGS 265 (1720)
Q Consensus 253 ~alr~L~nLas~s 265 (1720)
.+++.|..|+...
T Consensus 286 ~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 286 IALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHCCHC
T ss_pred hHHHHHHHhhccc
Confidence 7888888877665
No 40
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=5.5e-06 Score=108.37 Aligned_cols=224 Identities=17% Similarity=0.125 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-cCCcchhhhcccccHHHHHHH
Q 000286 29 KQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD-VLPSSCAAVVHYGAVTCFVAR 107 (1720)
Q Consensus 29 ~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~-~~p~~~~~vV~~GaVp~Lv~k 107 (1720)
++.-|+.+|.+|.-...+-....+-..||+..+|..|.... .+++..-+-+|.||.= +.......+-+.|-|-.|+.-
T Consensus 367 LRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~ 445 (2195)
T KOG2122|consen 367 LRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP-EELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC 445 (2195)
T ss_pred HHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence 34444445544433322222235788999999999998653 5888899999999973 223334455688999999866
Q ss_pred HhcCCcHHHHHHHHHHHHHhhccCcc----hhhhcCchhHHhhhhccC----ChHHHHHHHHHHHHhcc----CCCCchh
Q 000286 108 LLTIEYMDLAEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDFF----STGVQRVALSTAANMCK----KLPSDAA 175 (1720)
Q Consensus 108 LL~~~~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~~----~~~vqr~Al~aLsNlc~----~~~~~~~ 175 (1720)
-+......-...+|.||-||+.++.. .+--.|+|..|+.+|... +..+...|--||.|... ..++..+
T Consensus 446 al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQI 525 (2195)
T KOG2122|consen 446 ALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQI 525 (2195)
T ss_pred HHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHH
Confidence 66666655556788899999887764 355679999999999643 55666666666666554 3455566
Q ss_pred HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHH
Q 000286 176 DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLI 255 (1720)
Q Consensus 176 ~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~al 255 (1720)
..-.+||-+|...|++..-.||.++|-+|.||... +++..+.|.+.|.|+.|.+||.+. ...+.....
T Consensus 526 LR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR---~p~DQq~LwD~gAv~mLrnLIhSK---------hkMIa~GSa 593 (2195)
T KOG2122|consen 526 LRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR---SPEDQQMLWDDGAVPMLRNLIHSK---------HKMIAMGSA 593 (2195)
T ss_pred HHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC---CHHHHHHHHhcccHHHHHHHHhhh---------hhhhhhhHH
Confidence 66678999999999999999999999999999996 999999999999999999999876 344666666
Q ss_pred HHHHHHhcCC
Q 000286 256 RLLSTCASGS 265 (1720)
Q Consensus 256 r~L~nLas~s 265 (1720)
.+|.|+...-
T Consensus 594 aALrNLln~R 603 (2195)
T KOG2122|consen 594 AALRNLLNFR 603 (2195)
T ss_pred HHHHHHhcCC
Confidence 6676666554
No 41
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.19 E-value=0.00016 Score=89.30 Aligned_cols=356 Identities=14% Similarity=0.134 Sum_probs=222.6
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccc-----ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 55 DSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHY-----GAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 55 ~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~-----GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
..++..|+++|+...+.++.......+.-|+...|..+..+++. ....+++ .+|..++.-+.+.|+..|..+..
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl-~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFF-NLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHH-HHHcCCchhHHHHHHHHHHHHHh
Confidence 46899999999987778888777777778887777777766654 4567777 68888899999999999999976
Q ss_pred cCcchhhhcCchhHHh----hhhcc-CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccC--CHHHHHHHHH
Q 000286 130 EHPTACLRAGALMAVL----SYLDF-FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYH--DAKVLEHASV 202 (1720)
Q Consensus 130 ~~~~~Il~~GgL~~LL----~lLd~-~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~--D~~V~e~A~~ 202 (1720)
..+.. .....+..++ ..|.. .+...+..|+.++.++.+..+....-...+.++.|..+|... +..++-.+|.
T Consensus 131 ~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 131 FGLAK-MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred cCccc-cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 54431 1111222233 33333 357788899999999999877776544566899999999753 5678888888
Q ss_pred HHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCC------HHHHHHHHHcC
Q 000286 203 CLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS------PLCAKTLLHLG 276 (1720)
Q Consensus 203 aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s------~~~t~~Ll~~g 276 (1720)
|+--++- +++..+.+...++++.|++++.... ...+..-++.+|.|++..+ ......++++|
T Consensus 210 ~lWlLSF----~~~~~~~~~~~~~i~~l~~i~k~s~--------KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~ 277 (429)
T cd00256 210 CIWLLTF----NPHAAEVLKRLSLIQDLSDILKEST--------KEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK 277 (429)
T ss_pred HHHHHhc----cHHHHHhhccccHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC
Confidence 8877775 5566677777899999999998762 5678888888999998753 23456788899
Q ss_pred ChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCC
Q 000286 277 ISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTN 356 (1720)
Q Consensus 277 il~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 356 (1720)
+++.+..|... .|+ .+.|.+-++.+.+.|-.-....-+.+-|..-+..|.+.+.++ ..+ +.
T Consensus 278 l~~~l~~L~~r-----k~~--------DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~-H~s---e~-- 338 (429)
T cd00256 278 VLKTLQSLEQR-----KYD--------DEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPV-HKS---EK-- 338 (429)
T ss_pred hHHHHHHHhcC-----CCC--------cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCC-CCC---ch--
Confidence 88877766542 232 233333333333332222221112222223334466655222 100 00
Q ss_pred CCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHh
Q 000286 357 GNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVL 436 (1720)
Q Consensus 357 ~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il 436 (1720)
=..++..|.+ .++= .++-.|+++...+-++.+=-=++.=|.-.|.+... =+.++.....-..+..++
T Consensus 339 -FW~EN~~kf~--~~~~--------~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~--gr~i~~~lg~K~~vM~Lm 405 (429)
T cd00256 339 -FWRENADRLN--EKNY--------ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR--GKDVVEQLGGKQRVMRLL 405 (429)
T ss_pred -HHHHHHHHHH--hcch--------HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc--HHHHHHHcCcHHHHHHHh
Confidence 0122333321 1221 44555666655555553322222223333333211 122333344566677888
Q ss_pred hcCCCchHHhHHHHHHHHHh
Q 000286 437 AWKDPHVLIPSLQIAEILME 456 (1720)
Q Consensus 437 ~~~d~~lv~~aL~i~~~Ll~ 456 (1720)
+++|+.+--.||+++..||-
T Consensus 406 ~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 406 NHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999998873
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=98.18 E-value=0.00059 Score=90.29 Aligned_cols=306 Identities=13% Similarity=0.075 Sum_probs=208.4
Q ss_pred ccCcHHHHHHhhcCCCCHHHHHHHH-HHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc
Q 000286 54 VDSFAPVLVGLLNHESNPDIMLLAA-RALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP 132 (1720)
Q Consensus 54 ~~g~Vp~LV~lL~~~~~~eiq~~Aa-raLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~ 132 (1720)
..|=+..|-+.|++.+ ..-+..|. +.|++|+.|.. ... ..+-.+ +++.+.+.+++.-+--.|.+++...+
T Consensus 30 ~kge~~ELr~~L~s~~-~~~kk~alKkvIa~mt~G~D-vS~------LF~dVv-k~~~S~d~elKKLvYLYL~~ya~~~p 100 (746)
T PTZ00429 30 RRGEGAELQNDLNGTD-SYRKKAAVKRIIANMTMGRD-VSY------LFVDVV-KLAPSTDLELKKLVYLYVLSTARLQP 100 (746)
T ss_pred ccchHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCCCC-chH------HHHHHH-HHhCCCCHHHHHHHHHHHHHHcccCh
Confidence 3556777888887664 55445555 57777777642 222 455566 78899999999999999999998887
Q ss_pred c-hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000286 133 T-ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF 211 (1720)
Q Consensus 133 ~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~ 211 (1720)
+ +++. +..+.+-+.+.++.++-.|+.+++++.. ..++..+++.|.+.|.+.++-|...|+.|+.+|-..
T Consensus 101 elalLa---INtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~- 170 (746)
T PTZ00429 101 EKALLA---VNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD- 170 (746)
T ss_pred HHHHHH---HHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-
Confidence 7 5553 3445566667788888899999998753 245677889999999999999999999999999774
Q ss_pred CCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcc
Q 000286 212 ASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS 291 (1720)
Q Consensus 212 ~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~ 291 (1720)
+++ .+.+.++++.|.++|... ++.++..|+.+|..|+..++.... +..+.+..|...|.. .
T Consensus 171 --~pe---lv~~~~~~~~L~~LL~D~---------dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e---~ 231 (746)
T PTZ00429 171 --DMQ---LFYQQDFKKDLVELLNDN---------NPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPE---C 231 (746)
T ss_pred --Ccc---cccccchHHHHHHHhcCC---------CccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhc---C
Confidence 553 344668899999999766 577999999999999876654321 222333334444432 2
Q ss_pred cccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhcc
Q 000286 292 ANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSD 371 (1720)
Q Consensus 292 ~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 371 (1720)
..|.. + .+++++...-|.
T Consensus 232 ~EW~Q----------i-~IL~lL~~y~P~--------------------------------------------------- 249 (746)
T PTZ00429 232 NEWGQ----------L-YILELLAAQRPS--------------------------------------------------- 249 (746)
T ss_pred ChHHH----------H-HHHHHHHhcCCC---------------------------------------------------
Confidence 24432 2 345533322220
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHH
Q 000286 372 QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIA 451 (1720)
Q Consensus 372 ~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~ 451 (1720)
+.+....++..+.|. .++ .+..|-..|..+++.+..+++++.+..+++. ++.-+..+ .+.++.+-..+|+.+
T Consensus 250 ~~~e~~~il~~l~~~----Lq~-~N~AVVl~Aik~il~l~~~~~~~~~~~~~~r--l~~pLv~L-~ss~~eiqyvaLr~I 321 (746)
T PTZ00429 250 DKESAETLLTRVLPR----MSH-QNPAVVMGAIKVVANLASRCSQELIERCTVR--VNTALLTL-SRRDAETQYIVCKNI 321 (746)
T ss_pred CcHHHHHHHHHHHHH----hcC-CCHHHHHHHHHHHHHhcCcCCHHHHHHHHHH--HHHHHHHh-hCCCccHHHHHHHHH
Confidence 011123444455554 333 5789999999999999988877665554322 22222232 457788889999999
Q ss_pred HHHHhhCchhhhhhHH
Q 000286 452 EILMEKLPGTFSKMFV 467 (1720)
Q Consensus 452 ~~Ll~K~pd~f~~~f~ 467 (1720)
..|+++.|.+|.++++
T Consensus 322 ~~i~~~~P~lf~~~~~ 337 (746)
T PTZ00429 322 HALLVIFPNLLRTNLD 337 (746)
T ss_pred HHHHHHCHHHHHHHHH
Confidence 9999999998877643
No 43
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.17 E-value=2.1e-05 Score=95.06 Aligned_cols=218 Identities=18% Similarity=0.222 Sum_probs=163.6
Q ss_pred CcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhccCCcchhhhcc------cccHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 000286 56 SFAPVLVGLLNHE-SNPDIMLLAARALTHLCDVLPSSCAAVVH------YGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128 (1720)
Q Consensus 56 g~Vp~LV~lL~~~-~~~eiq~~AaraLtNL~~~~p~~~~~vV~------~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS 128 (1720)
+.+..++.+|+.- ++.+++......|..|+...+.....+.. .....+|+ +++..++.-++++|+..|..|.
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl-~ll~~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL-KLLDRNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH-HH-S-SSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH-HHhcCCCHHHHHHHHHHHHHHH
Confidence 4677777787765 67899999999999999999877776654 23678889 7999999999999999999998
Q ss_pred ccCcc--hhhhcCchhHHhhhhcc----CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhh-------ccCCHH
Q 000286 129 QEHPT--ACLRAGALMAVLSYLDF----FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL-------QYHDAK 195 (1720)
Q Consensus 129 ~~~~~--~Il~~GgL~~LL~lLd~----~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL-------~~~D~~ 195 (1720)
...+. .-...+.+..++++|.. .+...|..|+.++.++.+...........+.++.|..+| +..+..
T Consensus 134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 76664 23236777888888864 345678999999999998877776666688999999999 234578
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHH-HHHHHHH
Q 000286 196 VLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPL-CAKTLLH 274 (1720)
Q Consensus 196 V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~-~t~~Ll~ 274 (1720)
++-+++.|+--|+- +++..+.+...++++.|++++.... ...+..-++.+|.|++..+.. ....++.
T Consensus 214 l~Y~~ll~lWlLSF----~~~~~~~~~~~~~i~~L~~i~~~~~--------KEKvvRv~la~l~Nl~~~~~~~~~~~mv~ 281 (312)
T PF03224_consen 214 LQYQALLCLWLLSF----EPEIAEELNKKYLIPLLADILKDSI--------KEKVVRVSLAILRNLLSKAPKSNIELMVL 281 (312)
T ss_dssp HHHHHHHHHHHHTT----SHHHHHHHHTTSHHHHHHHHHHH----------SHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhc----CHHHHHHHhccchHHHHHHHHHhcc--------cchHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 88899999988886 8999999999999999999998763 678888999999999988765 7788999
Q ss_pred cCChHHHHHhhc
Q 000286 275 LGISGILKDILS 286 (1720)
Q Consensus 275 ~gil~~L~~LL~ 286 (1720)
+|+++.+..|..
T Consensus 282 ~~~l~~l~~L~~ 293 (312)
T PF03224_consen 282 CGLLKTLQNLSE 293 (312)
T ss_dssp H-HHHHHHHHHS
T ss_pred ccHHHHHHHHhc
Confidence 999998888775
No 44
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00097 Score=84.39 Aligned_cols=339 Identities=12% Similarity=0.099 Sum_probs=233.2
Q ss_pred ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhc-CCcHHHHHHHHHHHHHhhccCc
Q 000286 54 VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLT-IEYMDLAEQSLQALKKISQEHP 132 (1720)
Q Consensus 54 ~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~-~~~~dl~Eqal~aL~nIS~~~~ 132 (1720)
.+.-|+.||+-+.+..-++=...|||+|-.++. .++..|.- -++++|++.|-. -.+.++.-.++.+|.++-....
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 344688888888766667778899999999986 45555554 457788845533 3568999999999999965431
Q ss_pred --------c------------hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHH---HhCcHHHHHHhh
Q 000286 133 --------T------------ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADF---VMEAVPLLTNLL 189 (1720)
Q Consensus 133 --------~------------~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~---v~~~lP~L~~LL 189 (1720)
. .|...+-|..++.+++.++.++.+.++..++++.+..+..-... ....|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 1 37778999999999999999999999999999988765443222 245899999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC-CcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHH
Q 000286 190 QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH-GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLC 268 (1720)
Q Consensus 190 ~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~-gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~ 268 (1720)
...-.-|...++..|+.++. +...++.++.. ++..+|..++.... + .-..-++..|+..|-||-..+...
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k----~n~~IQKlVAFENaFerLfsIIeeEG---g--~dGgIVveDCL~ll~NLLK~N~SN 246 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVK----DNSSIQKLVAFENAFERLFSIIEEEG---G--LDGGIVVEDCLILLNNLLKNNISN 246 (970)
T ss_pred hhhhhhhchhHHHHHHHHHc----cCchHHHHHHHHHHHHHHHHHHHhcC---C--CCCcchHHHHHHHHHHHHhhCcch
Confidence 98888899999999999998 55667777755 69999999998652 1 112237889999999999998888
Q ss_pred HHHHHHcCChHHHHHhhcCCC----cccccccccccCCCHHHHHHH---HHHhhccCCCCCCCCCCCCccccccccCCcc
Q 000286 269 AKTLLHLGISGILKDILSGSG----VSANSAVPPALSRPAEQIFEI---VNLANELLPPLPQGTISLPSSSNMFVKGPVV 341 (1720)
Q Consensus 269 t~~Ll~~gil~~L~~LL~~~~----~~~~~~~s~i~~~~~~qi~~v---i~li~~LLP~L~~~~~s~~~~~~~~~~g~~~ 341 (1720)
.+...+.+.++.|..||.-.. ....|+. +-++.+ +..+..|+||=..
T Consensus 247 Q~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~--------Qrv~Nv~~~Lqivr~lVsP~Nt------------------ 300 (970)
T KOG0946|consen 247 QNFFREGSYIPRLLKLLSVFEFGDGEVFGWST--------QRVQNVIEALQIVRSLVSPGNT------------------ 300 (970)
T ss_pred hhHHhccccHHHHHhhcCcccccCcccccccH--------HHHHHHHHHHHHHHHhcCCCCc------------------
Confidence 788888999999999886432 3445643 223333 3334444442110
Q ss_pred cCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhhcCCH--HH
Q 000286 342 RKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSS-VNSPVRHKCLSVIGKLMYFSSA--EM 418 (1720)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss-~~~~VR~~~L~~l~r~v~~~~~--~~ 418 (1720)
+ .. .+.....-+-..++-+|+.++.++ +-.+|+...+.++..||+-.-- +.
T Consensus 301 -------~-----------~~--------~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~ 354 (970)
T KOG0946|consen 301 -------S-----------SI--------THQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDE 354 (970)
T ss_pred -------H-----------HH--------HHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHH
Confidence 0 00 001101112247889999998777 9999999999999999975332 33
Q ss_pred HHHhhhc------cchHHHHHHHhhcCC-CchHHhHHHHHHHHHhh
Q 000286 419 IQSLLSV------TNISSFLAGVLAWKD-PHVLIPSLQIAEILMEK 457 (1720)
Q Consensus 419 L~~~l~~------~~iss~la~il~~~d-~~lv~~aL~i~~~Ll~K 457 (1720)
+.++.-. ..+--.+.+|.+++- ..+-+.++.+.+..+-+
T Consensus 355 F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 355 FADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYD 400 (970)
T ss_pred HhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhc
Confidence 3433221 123333444444444 34555556666655544
No 45
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.00017 Score=85.24 Aligned_cols=185 Identities=19% Similarity=0.173 Sum_probs=147.6
Q ss_pred cCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHH
Q 000286 23 ADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVT 102 (1720)
Q Consensus 23 s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp 102 (1720)
+..++..+..|+..|-+++...++- ..+...|++..|+..|++. +.++...|+|+|+-++..+|.....|++.|+.+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnA--ndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNA--NDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhH--HhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 3348899999999998877765543 3577778888888888876 599999999999999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhcc--CChHHHHHHHHHHHHhccCCCCchhHH
Q 000286 103 CFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDF--FSTGVQRVALSTAANMCKKLPSDAADF 177 (1720)
Q Consensus 103 ~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~--~~~~vqr~Al~aLsNlc~~~~~~~~~~ 177 (1720)
.|+..|-...+..++.+|+.|+..+.++++. ..+..+|...|...+.. .+...||+++..++++........-..
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9995555556788889999999999998875 58888999999999987 678899999999999998554333333
Q ss_pred H-hCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 178 V-MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 178 v-~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
. ...--.+..+....|..+-+.++.++..+..-
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 3 33344444555666788888888887776664
No 46
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0027 Score=84.20 Aligned_cols=439 Identities=16% Similarity=0.161 Sum_probs=259.3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc-
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS- 91 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~- 91 (1720)
-+..|..-++...||..+--|+..+|+++..- =..+..=....+-..|+.++.++..+.+...-|+++.-|+...-..
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~ 115 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEK 115 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccc
Confidence 34555556666668999888999999998872 1222222344467778888888888899999999999888643222
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhh--hcCchhHHhhhhccCChHHHHHHHHHHHHhccC
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL--RAGALMAVLSYLDFFSTGVQRVALSTAANMCKK 169 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il--~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~ 169 (1720)
+. +.++.|. .-..++++.++|-|+..|..+...-++... -.-.+..+.+-+...+..+.-.|+.++.-+...
T Consensus 116 WP-----ell~~L~-q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~ 189 (1075)
T KOG2171|consen 116 WP-----ELLQFLF-QSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEY 189 (1075)
T ss_pred hH-----HHHHHHH-HHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 22 3455666 777889999999999999999875443211 011233344444555556777888888887774
Q ss_pred C--CCchhHHHhCcHHHHHHhh----ccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCC
Q 000286 170 L--PSDAADFVMEAVPLLTNLL----QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQ 243 (1720)
Q Consensus 170 ~--~~~~~~~v~~~lP~L~~LL----~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~ 243 (1720)
. ...........+|.+.+.+ +..|.+....++.+|.-++.. .+..+...+.. ++.-..++..+.+
T Consensus 190 ~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~---~pk~l~~~l~~-ii~~~l~Ia~n~~----- 260 (1075)
T KOG2171|consen 190 LENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES---EPKLLRPHLSQ-IIQFSLEIAKNKE----- 260 (1075)
T ss_pred hccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh---chHHHHHHHHH-HHHHHHHHhhccc-----
Confidence 4 3566667788888777664 567888889999999999986 66555555432 5555566665543
Q ss_pred CCCChhHHHHHHHHHHHHhcCCHHHHHHH--HHcCChHHHHHhhcCCCcccccccccc-----cCCCHHHHHHHHHHhh-
Q 000286 244 ASLSTPTYTGLIRLLSTCASGSPLCAKTL--LHLGISGILKDILSGSGVSANSAVPPA-----LSRPAEQIFEIVNLAN- 315 (1720)
Q Consensus 244 ~~ls~~i~~~alr~L~nLas~s~~~t~~L--l~~gil~~L~~LL~~~~~~~~~~~s~i-----~~~~~~qi~~vi~li~- 315 (1720)
+...++..||.+|..++..-+.-.+.. +-.-+++.+..+++.......|.-+.. -..|...-..+++.++
T Consensus 261 --l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~ 338 (1075)
T KOG2171|consen 261 --LENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLAL 338 (1075)
T ss_pred --ccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHh
Confidence 688999999999999887744433322 223355555555554332233332111 0113333344444322
Q ss_pred cc-----CCCCCCCCCCCCcccccccc------------CC-------cccCCC-CCCCCCCCCCCCCccchhhHHHhhc
Q 000286 316 EL-----LPPLPQGTISLPSSSNMFVK------------GP-------VVRKSP-ASSSGKQDDTNGNASEVSAREKLLS 370 (1720)
Q Consensus 316 ~L-----LP~L~~~~~s~~~~~~~~~~------------g~-------~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~ 370 (1720)
+| +|++.+-..-+-...+|..| |. +++--+ .-+ + =+.+..+.|-.-|.
T Consensus 339 ~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~-~------l~DphprVr~AA~n 411 (1075)
T KOG2171|consen 339 HLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLN-G------LNDPHPRVRYAALN 411 (1075)
T ss_pred cCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh-h------cCCCCHHHHHHHHH
Confidence 21 22222100000011122211 11 000000 000 0 00112233333332
Q ss_pred c--------CHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCC-C
Q 000286 371 D--------QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKD-P 441 (1720)
Q Consensus 371 ~--------~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d-~ 441 (1720)
. .|+.-+.+=..+.|.|+....++-+..|...+-.++.+....++.+.|...+....=. .-.+|-+++ +
T Consensus 412 aigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~--~l~~L~~~~~~ 489 (1075)
T KOG2171|consen 412 AIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEK--KLLLLLQSSKP 489 (1075)
T ss_pred HHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--HHHHHhcCCch
Confidence 2 3554455556888899999999999999999999999999999998887544321111 122233333 4
Q ss_pred chHHhHHHHHHHHHhhCchhhhhhHHhhcHHHHHHHHHh
Q 000286 442 HVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 480 (1720)
Q Consensus 442 ~lv~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~I~~L~~ 480 (1720)
.+.-.++..+-..-.-..+-|.++|.| +++.++.+..
T Consensus 490 ~v~e~vvtaIasvA~AA~~~F~pY~d~--~Mp~L~~~L~ 526 (1075)
T KOG2171|consen 490 YVQEQAVTAIASVADAAQEKFIPYFDR--LMPLLKNFLQ 526 (1075)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHhHHHH--HHHHHHHHHh
Confidence 444445544444444555668888877 5777766654
No 47
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00028 Score=89.03 Aligned_cols=409 Identities=16% Similarity=0.137 Sum_probs=235.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhh
Q 000286 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAA 94 (1720)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~ 94 (1720)
+-+-++|++. |...+-.|+.++.-++..-++..+ .-.+.+.+|.++.+|.++ +..+...++|+|+-|++..|+.+..
T Consensus 367 ~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~L-t~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n 443 (859)
T KOG1241|consen 367 PFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKL-TPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIIN 443 (859)
T ss_pred HHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhh-hHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhccc
Confidence 3344478776 888999999999998887655554 445678899999999955 5777789999999999999977765
Q ss_pred hc-ccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcC-----------chhHHhhhhc---cCChHHHHHH
Q 000286 95 VV-HYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAG-----------ALMAVLSYLD---FFSTGVQRVA 159 (1720)
Q Consensus 95 vV-~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~G-----------gL~~LL~lLd---~~~~~vqr~A 159 (1720)
.+ -.+.|+.|++-| .+++.++..|.|++.+++....++....| .+..|+..-+ -...+....|
T Consensus 444 ~~~l~~~l~~l~~gL--~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AA 521 (859)
T KOG1241|consen 444 QELLQSKLSALLEGL--NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAA 521 (859)
T ss_pred HhhhhHHHHHHHHHh--hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHH
Confidence 33 556777777555 45678999999999999865554333331 1222222222 2334455556
Q ss_pred HHHHHHhccCCCCchhHHHhCcHHHHHH---------hhccCC----HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCc
Q 000286 160 LSTAANMCKKLPSDAADFVMEAVPLLTN---------LLQYHD----AKVLEHASVCLTRIAEAFASSPDKLDELCNHGL 226 (1720)
Q Consensus 160 l~aLsNlc~~~~~~~~~~v~~~lP~L~~---------LL~~~D----~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gl 226 (1720)
-.+|.-+.++.+......+.+..+.+.. .|...| .++....|.+|..|...+.+ .+..+.+. +
T Consensus 522 YeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~---~~~~~~d~-i 597 (859)
T KOG1241|consen 522 YEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS---DIREVSDQ-I 597 (859)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc---cchhHHHH-H
Confidence 7788888887777777777776666655 455555 35677788888888886433 33333332 5
Q ss_pred HHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHH-HHHHHHHcCChHHHHHhhcCCCc--ccccccccccCCC
Q 000286 227 VTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPL-CAKTLLHLGISGILKDILSGSGV--SANSAVPPALSRP 303 (1720)
Q Consensus 227 l~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~-~t~~Ll~~gil~~L~~LL~~~~~--~~~~~~s~i~~~~ 303 (1720)
+..+.+++.... +..+...++.+++.++..=.. -.+.+ .-+.|.|..-|+.... .++.++ .++..-
T Consensus 598 M~lflri~~s~~--------s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~qVc~~aV-glVgdl 666 (859)
T KOG1241|consen 598 MGLFLRIFESKR--------SAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEYQVCAAAV-GLVGDL 666 (859)
T ss_pred HHHHHHHHcCCc--------cccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHHHHHHHHH-HHHHHH
Confidence 677777887643 455777888888877643111 11111 2344555555543332 111111 110000
Q ss_pred HHHHH-HHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchh---hHHHhhccCHHHHHHH
Q 000286 304 AEQIF-EIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVS---AREKLLSDQPELLQQF 379 (1720)
Q Consensus 304 ~~qi~-~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~pe~~~~f 379 (1720)
.+-+. .++-+..+++-.|....-+ |..++- -++..- .-+. -..-..+..|
T Consensus 667 ~raL~~~i~py~d~~mt~Lvq~Lss-~~~hR~-----------------------vKP~IlS~FgDIA--laIg~~F~~Y 720 (859)
T KOG1241|consen 667 ARALEDDILPYCDELMTVLVQCLSS-PNLHRN-----------------------VKPAILSVFGDIA--LAIGADFEPY 720 (859)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHccC-cccccc-----------------------ccchHHHHHHHHH--HHHHHhHHHH
Confidence 00000 0111112222222221110 100000 000000 0000 1123447788
Q ss_pred HHHHHHHHHHHHhccCCH----------HHHHHHHHHHHHHhhcCCHHHHHHhhhccchH----HHHHHHhhcCC--Cch
Q 000286 380 GMDLLPVLIQIYGSSVNS----------PVRHKCLSVIGKLMYFSSAEMIQSLLSVTNIS----SFLAGVLAWKD--PHV 443 (1720)
Q Consensus 380 ~~~llP~L~~vy~ss~~~----------~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~is----s~la~il~~~d--~~l 443 (1720)
+..++|+|-++-+.-.+. .+|..||.+.--|+.-.... .+.....++. +||..|-.-.| ..+
T Consensus 721 l~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~--~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~ 798 (859)
T KOG1241|consen 721 LEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTH--ADVMLVQPYVPHIISFIDRIAAEPDVSEAL 798 (859)
T ss_pred HHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcc--cchhhhhcchHHHHHHHHHHhcCcccchHH
Confidence 889999998876333333 57888888877766443310 0112223444 44444433333 356
Q ss_pred HHhHHHHHHHHHhhCchhhhhhHHhhcH
Q 000286 444 LIPSLQIAEILMEKLPGTFSKMFVREGV 471 (1720)
Q Consensus 444 v~~aL~i~~~Ll~K~pd~f~~~f~REGV 471 (1720)
+-.|+-++--|..-+|+--.+.|.-+-.
T Consensus 799 ~~~a~GlIgDL~~~fg~~~~~~~~~~~~ 826 (859)
T KOG1241|consen 799 HAAALGLIGDLATMFGKGVIKLFLDEDW 826 (859)
T ss_pred HHHHHHHHHHHHHHcccchhhhhcchHH
Confidence 7789999999999988766666655433
No 48
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.95 E-value=0.00023 Score=84.44 Aligned_cols=231 Identities=14% Similarity=0.101 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHhhccCC---cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHH
Q 000286 71 PDIMLLAARALTHLCDVLP---SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAV 144 (1720)
Q Consensus 71 ~eiq~~AaraLtNL~~~~p---~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~L 144 (1720)
..+...++.|+.-++.... ..+..-+++|++..|. .+..+++.++-+|+..+|+|||-++.. ++++.||-..+
T Consensus 56 ~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lr-q~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqiv 134 (604)
T KOG4500|consen 56 DTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLR-QTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIV 134 (604)
T ss_pred chhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHH-hCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceeh
Confidence 3455566777777764221 1222347789999999 888999999999999999999988764 79999998888
Q ss_pred hhhhccC-------ChHHHHHHHHHHHHhccCC-CCchhHHHhCcHHHHHHhh--ccCCHHHHHHHHHHHHHHHhhcCCC
Q 000286 145 LSYLDFF-------STGVQRVALSTAANMCKKL-PSDAADFVMEAVPLLTNLL--QYHDAKVLEHASVCLTRIAEAFASS 214 (1720)
Q Consensus 145 L~lLd~~-------~~~vqr~Al~aLsNlc~~~-~~~~~~~v~~~lP~L~~LL--~~~D~~V~e~A~~aLs~L~~~~~~~ 214 (1720)
+..|+.. .......+.-.+.|+.-.. .........+++|.|..++ ..++...-+..+..+.++..- -
T Consensus 135 id~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~---~ 211 (604)
T KOG4500|consen 135 IDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF---V 211 (604)
T ss_pred HhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH---H
Confidence 8888742 1245666777889987744 4444455678999999995 455667777777777777764 3
Q ss_pred HHHHHH-HHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccc
Q 000286 215 PDKLDE-LCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSAN 293 (1720)
Q Consensus 215 ~~~~~~-li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~ 293 (1720)
.+++.. ..+..++..++++|... +.+.+...++.+|...+.. +.....+.+.|+++.++.++...+.-+
T Consensus 212 ~e~~~~~~~d~sl~~~l~~ll~~~--------v~~d~~eM~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t- 281 (604)
T KOG4500|consen 212 CEMLYPFCKDCSLVFMLLQLLPSM--------VREDIDEMIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFT- 281 (604)
T ss_pred HHhhhhhhccchHHHHHHHHHHHh--------hccchhhHHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhccccc-
Confidence 333333 44668899999999654 4677888888888887755 555667889999999999998765422
Q ss_pred cccccccCCCHHHHHHHHHHhhccCCCCCCC
Q 000286 294 SAVPPALSRPAEQIFEIVNLANELLPPLPQG 324 (1720)
Q Consensus 294 ~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~ 324 (1720)
.++.-......+++++--|..|
T Consensus 282 ---------~k~d~~~l~k~~~el~vllltG 303 (604)
T KOG4500|consen 282 ---------KKTDMLNLFKRIAELDVLLLTG 303 (604)
T ss_pred ---------chHHHHHHHHhhhhHhhhhhcC
Confidence 2233344445556665555444
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00066 Score=80.50 Aligned_cols=179 Identities=17% Similarity=0.201 Sum_probs=140.5
Q ss_pred CCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHh
Q 000286 69 SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVL 145 (1720)
Q Consensus 69 ~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL 145 (1720)
.+++=+..|.--|-.+++.. +++..++..|...+++ .+++..+..|++-|+|+|+.+++.+|. .|++.|++..|+
T Consensus 95 ~~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll-~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLL-GYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHH-HHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 35666667777777777644 6778899999999999 699999999999999999999999996 699999999999
Q ss_pred hhhcc-CChHHHHHHHHHHHHhccCCCCchhHH-HhCcHHHHHHhhcc--CCHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 000286 146 SYLDF-FSTGVQRVALSTAANMCKKLPSDAADF-VMEAVPLLTNLLQY--HDAKVLEHASVCLTRIAEAFASSPDKLDEL 221 (1720)
Q Consensus 146 ~lLd~-~~~~vqr~Al~aLsNlc~~~~~~~~~~-v~~~lP~L~~LL~~--~D~~V~e~A~~aLs~L~~~~~~~~~~~~~l 221 (1720)
..|.. .+.++..+|+.+++.+.|+.++..... .......|..+|+. .+.+.+..|+..+.+|... +....+.+
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~---~~s~~d~~ 249 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE---DKSDEDIA 249 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh---hhhhhhHH
Confidence 99985 466788999999999999775443333 34569999999998 6789999999999999996 55555555
Q ss_pred HhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHH
Q 000286 222 CNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTC 261 (1720)
Q Consensus 222 i~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nL 261 (1720)
...+....++.+...- ...+...++..+..+
T Consensus 250 ~~~~f~~~~~~l~~~l---------~~~~~e~~l~~~l~~ 280 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSL---------DFEVNEAALTALLSL 280 (342)
T ss_pred HHhhhhHHHHHHhhcc---------chhhhHHHHHHHHHH
Confidence 5566666666666554 455666666655544
No 50
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0023 Score=81.09 Aligned_cols=269 Identities=15% Similarity=0.132 Sum_probs=193.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcC-CCCHHHHHHHHHHHHHhhccCC-
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH-ESNPDIMLLAARALTHLCDVLP- 89 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~-~~~~eiq~~AaraLtNL~~~~p- 89 (1720)
..++.|++.+.+..=++-+..|+..|- -++.. .+.-+....+++|++.|.. -.++++...|.-.++++.....
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLK-a~srk----YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLK-AFSRK----YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHH-HHHHH----HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 478899999965546777888888873 33321 1223445568899999973 4579999999999999986542
Q ss_pred -----cch----------h-hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc----hhh-hcCchhHHhhhh
Q 000286 90 -----SSC----------A-AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT----ACL-RAGALMAVLSYL 148 (1720)
Q Consensus 90 -----~~~----------~-~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~----~Il-~~GgL~~LL~lL 148 (1720)
+.+ . .+-..+-|..|+ ..++..+.-|+..+++.|.+|-+.-+. +++ .--||..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll-~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLL-QSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHH-HHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 222 1 133557788888 888999999999999999999765553 344 446999999999
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCc-hhHHHhCcHHHHHHhhccC---C-HHHHHHHHHHHHHHHhhcCCCHHHHHHHHh
Q 000286 149 DFFSTGVQRVALSTAANMCKKLPSD-AADFVMEAVPLLTNLLQYH---D-AKVLEHASVCLTRIAEAFASSPDKLDELCN 223 (1720)
Q Consensus 149 d~~~~~vqr~Al~aLsNlc~~~~~~-~~~~v~~~lP~L~~LL~~~---D-~~V~e~A~~aLs~L~~~~~~~~~~~~~li~ 223 (1720)
+.....+.-.++..++-+.+..+.. ......+++..|..++..+ | .-|+++|+..+-+|... +..+.+.+.+
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~---N~SNQ~~FrE 252 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN---NISNQNFFRE 252 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh---CcchhhHHhc
Confidence 9766666666888888888866544 4555678999999998754 4 36889999999999985 6777777778
Q ss_pred CCcHHHHHHhhcCCCCCC----CCCCCChhHHHHHHHHHHHHhcCC-----HHHHH-HHHHcCChHHHHHhhcCCC
Q 000286 224 HGLVTQAATLISTSNSGG----GQASLSTPTYTGLIRLLSTCASGS-----PLCAK-TLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 224 ~gll~~Lv~LL~~~~~~~----~~~~ls~~i~~~alr~L~nLas~s-----~~~t~-~Ll~~gil~~L~~LL~~~~ 289 (1720)
.+-|++|..||....... ++..-....+..+|.++..+++-. ..+.+ .+..++++..|..+|.+..
T Consensus 253 ~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~ 328 (970)
T KOG0946|consen 253 GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG 328 (970)
T ss_pred cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC
Confidence 889999999997542111 222222334666777777776532 23333 4555899999999999875
No 51
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.78 E-value=0.00071 Score=92.93 Aligned_cols=184 Identities=15% Similarity=0.133 Sum_probs=145.8
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
..++.|+..|.+. |+.++..|+..|.++- ...+++.|+..|+++ ++++...|+.+|..+.+..+
T Consensus 621 ~~~~~L~~~L~D~-d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 621 PSVAELAPYLADP-DPGVRRTAVAVLTETT------------PPGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred hhHHHHHHHhcCC-CHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccC--
Confidence 4567888888776 9999999999998652 235799999999876 59999999999998865332
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCC
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP 171 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~ 171 (1720)
..+.|. .+|..+++.++..|+.+|+.+... ....++.+|...+..+++.|+++|..+-
T Consensus 685 --------~~~~L~-~~L~~~d~~VR~~A~~aL~~~~~~---------~~~~l~~~L~D~d~~VR~~Av~aL~~~~---- 742 (897)
T PRK13800 685 --------PAPALR-DHLGSPDPVVRAAALDVLRALRAG---------DAALFAAALGDPDHRVRIEAVRALVSVD---- 742 (897)
T ss_pred --------chHHHH-HHhcCCCHHHHHHHHHHHHhhccC---------CHHHHHHHhcCCCHHHHHHHHHHHhccc----
Confidence 246777 777889999999999999998532 2345778889999999999999998751
Q ss_pred CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHH
Q 000286 172 SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTY 251 (1720)
Q Consensus 172 ~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~ 251 (1720)
..+.|..+|.++|..|...++.+|..+... . ...++.|..++... ++.++
T Consensus 743 ---------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~---~---------~~~~~~L~~ll~D~---------d~~VR 792 (897)
T PRK13800 743 ---------DVESVAGAATDENREVRIAVAKGLATLGAG---G---------APAGDAVRALTGDP---------DPLVR 792 (897)
T ss_pred ---------CcHHHHHHhcCCCHHHHHHHHHHHHHhccc---c---------chhHHHHHHHhcCC---------CHHHH
Confidence 124577889999999999999999999763 1 12367788888776 57899
Q ss_pred HHHHHHHHHHhc
Q 000286 252 TGLIRLLSTCAS 263 (1720)
Q Consensus 252 ~~alr~L~nLas 263 (1720)
..++.+|+.+..
T Consensus 793 ~aA~~aLg~~g~ 804 (897)
T PRK13800 793 AAALAALAELGC 804 (897)
T ss_pred HHHHHHHHhcCC
Confidence 999999999854
No 52
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.77 E-value=0.01 Score=71.10 Aligned_cols=389 Identities=13% Similarity=0.086 Sum_probs=242.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhc---CCCC---HHHHHHHHHHHHHhhccCCc
Q 000286 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLN---HESN---PDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~---~~~~---~eiq~~AaraLtNL~~~~p~ 90 (1720)
|.+...|. |-.+..+..++|.++....++. ...|...|.-..++++|+ +.++ .+.-..+|..|.|..-++.+
T Consensus 92 Lrq~psS~-d~ev~~Q~~RaLgNiCydn~E~-R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~ 169 (604)
T KOG4500|consen 92 LRQTPSSP-DTEVHEQCFRALGNICYDNNEN-RAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRE 169 (604)
T ss_pred HHhCCCCC-cccHHHHHHHHHhhhhccCchh-HHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHH
Confidence 33344555 7888899999999888876543 345666666556666665 3333 45556888899999999888
Q ss_pred chhhhcccccHHHHHHHHhcCCc--HHHHHHHHHHHHHhhcc-Cc---chhhhcCchhHHhhhhccC-ChHHHHHHHHHH
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEY--MDLAEQSLQALKKISQE-HP---TACLRAGALMAVLSYLDFF-STGVQRVALSTA 163 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~--~dl~Eqal~aL~nIS~~-~~---~~Il~~GgL~~LL~lLd~~-~~~vqr~Al~aL 163 (1720)
....+++.|++|.|. .++.|.. ..+.|.++-...|+..- +. ....+....-.++++|... ...+-..+..++
T Consensus 170 l~aq~~~~gVl~tL~-~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feil 248 (604)
T KOG4500|consen 170 LRAQVADAGVLNTLA-ITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEIL 248 (604)
T ss_pred HHHHHHhcccHHHHH-HHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHH
Confidence 888999999999999 8888765 56667787777777542 11 2344555555666666532 334444566666
Q ss_pred HHhccCCCCchhHHHhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHHhhc---CCCHHHHHHHHhCC-cHHHHHHhhcCCC
Q 000286 164 ANMCKKLPSDAADFVMEAVPLLTNLLQY-HDAKVLEHASVCLTRIAEAF---ASSPDKLDELCNHG-LVTQAATLISTSN 238 (1720)
Q Consensus 164 sNlc~~~~~~~~~~v~~~lP~L~~LL~~-~D~~V~e~A~~aLs~L~~~~---~~~~~~~~~li~~g-ll~~Lv~LL~~~~ 238 (1720)
+..+.+..-.-.....+.+..+.++++. .|..-.+++..-+-++++-. -..++..+.+...+ +++.++.-+.+.
T Consensus 249 a~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~- 327 (604)
T KOG4500|consen 249 AKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSD- 327 (604)
T ss_pred HHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCC-
Confidence 6666554333222233456666666554 33322333333333333210 01345566677666 899999999876
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccC
Q 000286 239 SGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELL 318 (1720)
Q Consensus 239 ~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LL 318 (1720)
+.+.++...-+|+|+++.++.. ..+++.++++.|..+|...+.. .|+-+..++++.-+.+|+
T Consensus 328 --------d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~v---------dgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 328 --------DSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDV---------DGNVERQHACLSALRNLM 389 (604)
T ss_pred --------chhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCC---------CccchhHHHHHHHHHhcc
Confidence 4668889999999999986655 5689999999999999764431 234444455555444554
Q ss_pred CCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHH
Q 000286 319 PPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSP 398 (1720)
Q Consensus 319 P~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~ 398 (1720)
-|.+... ++.. .+ . .+-++|.| ....+.
T Consensus 390 IPv~nka-------~~~~---------------------------------aG---v----teaIL~~l-----k~~~pp 417 (604)
T KOG4500|consen 390 IPVSNKA-------HFAP---------------------------------AG---V----TEAILLQL-----KLASPP 417 (604)
T ss_pred ccCCchh-------hccc---------------------------------cc---h----HHHHHHHH-----HhcCCc
Confidence 4433310 0000 00 0 11222222 223344
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHh-HHHHHHHHH--hhCchhhhhhHHhhcHHHHH
Q 000286 399 VRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIP-SLQIAEILM--EKLPGTFSKMFVREGVVHAV 475 (1720)
Q Consensus 399 VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~-aL~i~~~Ll--~K~pd~f~~~f~REGV~~~I 475 (1720)
|-.+-|. -+||+--+.+-.+.++.++.-.-.-|..+=.++|...|.+ .+.+..-|. .|+.|+....-+.-||-+.|
T Consensus 418 v~fkllg-TlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~V 496 (604)
T KOG4500|consen 418 VTFKLLG-TLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKV 496 (604)
T ss_pred chHHHHH-HHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHH
Confidence 4445443 4678877777788889999888788887777788665553 455544455 45778777776777777777
Q ss_pred HHHHh
Q 000286 476 DQLIL 480 (1720)
Q Consensus 476 ~~L~~ 480 (1720)
..+..
T Consensus 497 sm~t~ 501 (604)
T KOG4500|consen 497 SMFTK 501 (604)
T ss_pred HHHHH
Confidence 76654
No 53
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.74 E-value=0.0011 Score=91.12 Aligned_cols=197 Identities=15% Similarity=0.078 Sum_probs=114.3
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
...++.|+..|..+ |+.++..|+..|.++..... -.+.|...|+++ ++.++..|+.+|..+-.
T Consensus 651 ~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~-----------~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~---- 713 (897)
T PRK13800 651 PGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLP-----------PAPALRDHLGSP-DPVVRAAALDVLRALRA---- 713 (897)
T ss_pred hhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccC-----------chHHHHHHhcCC-CHHHHHHHHHHHHhhcc----
Confidence 34567788888655 99999999999987743211 135677777764 57888888887777532
Q ss_pred chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCC
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKL 170 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~ 170 (1720)
+.++.|+ ++|..++..|+..|+++|+.|.. ...|+.++...+..+++.++.+|..+....
T Consensus 714 --------~~~~~l~-~~L~D~d~~VR~~Av~aL~~~~~-----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 714 --------GDAALFA-AALGDPDHRVRIEAVRALVSVDD-----------VESVAGAATDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred --------CCHHHHH-HHhcCCCHHHHHHHHHHHhcccC-----------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc
Confidence 1233455 56677777777777777776521 123444555555555555555555554321
Q ss_pred CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc----------CC-CHHH----HHHHH---hCCcHHHHHH
Q 000286 171 PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF----------AS-SPDK----LDELC---NHGLVTQAAT 232 (1720)
Q Consensus 171 ~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~----------~~-~~~~----~~~li---~~gll~~Lv~ 232 (1720)
...++.|..+++.+|+.|...|+.+|..+...- .. ++.. .+.|- ....++.|+.
T Consensus 774 --------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~ 845 (897)
T PRK13800 774 --------APAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVE 845 (897)
T ss_pred --------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHH
Confidence 112455555555555555555555555443310 00 0000 00000 1135577777
Q ss_pred hhcCCCCCCCCCCCChhHHHHHHHHHHHH
Q 000286 233 LISTSNSGGGQASLSTPTYTGLIRLLSTC 261 (1720)
Q Consensus 233 LL~~~~~~~~~~~ls~~i~~~alr~L~nL 261 (1720)
+|... +..++..++++|+.+
T Consensus 846 ~L~D~---------~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 846 ALTDP---------HLDVRKAAVLALTRW 865 (897)
T ss_pred HhcCC---------CHHHHHHHHHHHhcc
Confidence 77665 567888888888886
No 54
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.74 E-value=2.5e-05 Score=64.81 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=37.0
Q ss_pred CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 89 p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
++++..++++|+||.|+ +|+.+.+.+++++|+|||+||++
T Consensus 2 ~~~~~~i~~~g~i~~Lv-~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLV-QLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHH-HHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHH-HHHcCCCHHHHHHHHHHHHHHhC
Confidence 56788899999999999 99999999999999999999984
No 55
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0067 Score=77.09 Aligned_cols=379 Identities=13% Similarity=0.145 Sum_probs=230.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhcCCC------ccc-ccccc----------cCcHHHHHHhhcC------CCCHHHH
Q 000286 18 LSGLRADGEEGKQVEALTQLCEMLSIGTE------ESL-STFSV----------DSFAPVLVGLLNH------ESNPDIM 74 (1720)
Q Consensus 18 l~~L~s~~D~~~ql~Al~~L~~lL~~~~~------~~l-~~~~~----------~g~Vp~LV~lL~~------~~~~eiq 74 (1720)
+...+++ +..+.++|+.--|.+...+.+ +.. ...++ ..++|.|+++|.. +++..+-
T Consensus 265 l~amks~-~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~ 343 (859)
T KOG1241|consen 265 LAAMKSD-NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPA 343 (859)
T ss_pred HHHHcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHH
Confidence 4556776 889999998887765543321 001 11221 2589999999964 2234567
Q ss_pred HHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhccC
Q 000286 75 LLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFF 151 (1720)
Q Consensus 75 ~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~ 151 (1720)
..|.-||.-++... ...||. -|=++++.=+..++-.-+|.++.|++-|-..... .-+..++++.++.++...
T Consensus 344 kAAg~CL~l~A~~~---~D~Iv~--~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~ 418 (859)
T KOG1241|consen 344 KAAGVCLMLFAQCV---GDDIVP--HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP 418 (859)
T ss_pred HHHHHHHHHHHHHh---cccchh--hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc
Confidence 78888888777532 223444 2334454566778888889999999988654332 345577899999999988
Q ss_pred ChHHHHHHHHHHHHhccCCCCch--hHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCC-HHH-HHHHHhCCcH
Q 000286 152 STGVQRVALSTAANMCKKLPSDA--ADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASS-PDK-LDELCNHGLV 227 (1720)
Q Consensus 152 ~~~vqr~Al~aLsNlc~~~~~~~--~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~-~~~-~~~li~~gll 227 (1720)
+..+.+.+.|++..+|...+... .......++.|..-| ++.++|..++||++.++++.+... ++. -....+.=..
T Consensus 419 sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~ 497 (859)
T KOG1241|consen 419 SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYE 497 (859)
T ss_pred hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHH
Confidence 88999999999999999766332 222334455555544 356899999999999999863100 000 0000000011
Q ss_pred HHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHc---CChHHHHHhhcCCCcccccccccc-cCCC
Q 000286 228 TQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHL---GISGILKDILSGSGVSANSAVPPA-LSRP 303 (1720)
Q Consensus 228 ~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~---gil~~L~~LL~~~~~~~~~~~s~i-~~~~ 303 (1720)
.-+-.||...+-. .--..+.+..+..+|..|...+++-.-.++.. =++..|-+.+. +++ -..+
T Consensus 498 ~ii~~Ll~~tdr~---dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~----------~~~l~~~d 564 (859)
T KOG1241|consen 498 AIIGSLLKVTDRA---DGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTIS----------SQILSLAD 564 (859)
T ss_pred HHHHHHHhhcccc---ccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH----------HHhccHhh
Confidence 1222333332200 00135688899999999998887665444321 12222333332 111 1135
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHH
Q 000286 304 AEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDL 383 (1720)
Q Consensus 304 ~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~l 383 (1720)
.+|+.++=.++++.|-.+.... + + .+......|
T Consensus 565 r~q~~eLQs~Lc~~Lq~i~rk~-------------------~---------------------------~-~~~~~~d~i 597 (859)
T KOG1241|consen 565 RAQLNELQSLLCNTLQSIIRKV-------------------G---------------------------S-DIREVSDQI 597 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------------------c---------------------------c-cchhHHHHH
Confidence 5666666555555544322210 0 0 123344677
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHh-hcCCCchHHhHHHHHHHHHhhCchhh
Q 000286 384 LPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVL-AWKDPHVLIPSLQIAEILMEKLPGTF 462 (1720)
Q Consensus 384 lP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il-~~~d~~lv~~aL~i~~~Ll~K~pd~f 462 (1720)
+-+|+.+|.+.-..-|...++-++.-+++...+..++-. ..+.-||-.-| +..|..+...|.-++--|..-+.+.|
T Consensus 598 M~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym---~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i 674 (859)
T KOG1241|consen 598 MGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM---PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDI 674 (859)
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH---HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888889998855555788999999998887776665532 12334444445 45666677788888888888888877
Q ss_pred hhhH
Q 000286 463 SKMF 466 (1720)
Q Consensus 463 ~~~f 466 (1720)
.++-
T Consensus 675 ~py~ 678 (859)
T KOG1241|consen 675 LPYC 678 (859)
T ss_pred hhHH
Confidence 7753
No 56
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.72 E-value=0.007 Score=76.15 Aligned_cols=239 Identities=16% Similarity=0.120 Sum_probs=171.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccCCcchh
Q 000286 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~-~~eiq~~AaraLtNL~~~~p~~~~ 93 (1720)
..++..|... ||+..+.|....++++..- .+.-..++..|.+|.|+.+++.++ .++++.+.+-++...+.+......
T Consensus 12 ~~~l~~L~~~-dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~ 89 (678)
T KOG1293|consen 12 LDLLYRLLHL-DPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVD 89 (678)
T ss_pred HHHHHhhhcC-CHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHH
Confidence 3456666666 8999999999998877754 444457899999999999998664 467776666666667778888888
Q ss_pred hhcccccHHHHHHHHhcCCc-HHHHHHHHHHHHHhhccCc--chhh---hcCchhHHhhhhccCChHHHHHHHHHHHHhc
Q 000286 94 AVVHYGAVTCFVARLLTIEY-MDLAEQSLQALKKISQEHP--TACL---RAGALMAVLSYLDFFSTGVQRVALSTAANMC 167 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~-~dl~Eqal~aL~nIS~~~~--~~Il---~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1720)
.+++++.+|.|. +|+...+ ..+.+.++.+|.+|-.-.+ ..+. ....+..+-.++....-.+++.-+..++++|
T Consensus 90 svL~~~~ll~Ll-~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s 168 (678)
T KOG1293|consen 90 SVLRIIELLKLL-QLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS 168 (678)
T ss_pred HHHHHhhHHHHH-HHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc
Confidence 999999999999 7777777 8999999999999954332 2222 2222333322223245566777888888999
Q ss_pred cCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHH----HHHHHHhCCcHHH--HHHhhcCCCCCC
Q 000286 168 KKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPD----KLDELCNHGLVTQ--AATLISTSNSGG 241 (1720)
Q Consensus 168 ~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~----~~~~li~~gll~~--Lv~LL~~~~~~~ 241 (1720)
....+.......++...+..++.+-..++...|+.|++|-+.-...++. ....+.+.|+.++ +.+|+...
T Consensus 169 ~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~---- 244 (678)
T KOG1293|consen 169 STKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP---- 244 (678)
T ss_pred ccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC----
Confidence 8777666666788888888888888889999999999943322223544 3445556688874 44555554
Q ss_pred CCCCCChhHHHHHHHHHHHHhcCC
Q 000286 242 GQASLSTPTYTGLIRLLSTCASGS 265 (1720)
Q Consensus 242 ~~~~ls~~i~~~alr~L~nLas~s 265 (1720)
..+.+...+.+|.+++.++
T Consensus 245 -----~~s~~l~sl~cl~~~~~~s 263 (678)
T KOG1293|consen 245 -----DFSERLRSLECLVPYLRKS 263 (678)
T ss_pred -----CccHHHHHHHHHHHHHhcc
Confidence 3446688888888888777
No 57
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.71 E-value=0.0003 Score=85.12 Aligned_cols=214 Identities=17% Similarity=0.168 Sum_probs=144.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccc------cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000286 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSV------DSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~------~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p 89 (1720)
.++..+ + .+.+...-.+.-+.+++..... ....+.. ...+.+|+++|..+ +.-++..|+++|+.++...+
T Consensus 62 ~lL~~~-~-~~~d~v~yvL~li~dll~~~~~-~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~ 137 (312)
T PF03224_consen 62 NLLNKL-S-SNDDTVQYVLTLIDDLLSDDPS-RVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGP 137 (312)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHH-SSS-SHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHc-c-CcHHHHHHHHHHHHHHHhcCHH-HHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCC
Confidence 344444 2 4788888899999998887543 1122222 23688888988877 59999999999999999877
Q ss_pred cchhhhcccccHHHHHHHHhc---CCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhh-----cc--CChHHHH
Q 000286 90 SSCAAVVHYGAVTCFVARLLT---IEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYL-----DF--FSTGVQR 157 (1720)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~---~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lL-----d~--~~~~vqr 157 (1720)
......+ .++++.+++-|-. +++.+++.-|+++|.++.+...- .+.+.|+++.+...| .. ....+|-
T Consensus 138 ~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 138 KRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp T--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHH
T ss_pred ccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 6555433 4677777733322 34566778999999999876553 688899999999999 22 3456666
Q ss_pred HHHHHHHHhccCCCCchhHHHhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcC
Q 000286 158 VALSTAANMCKKLPSDAADFVMEAVPLLTNLLQY-HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIST 236 (1720)
Q Consensus 158 ~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~-~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~ 236 (1720)
.++-|+.-++.+.+......-..++|.|..+++. .-.||+.-++.+|.|++.. .....+..++.+|+++.+-.|...
T Consensus 217 ~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~--~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 217 QALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK--APKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS--SSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc--cHHHHHHHHHHccHHHHHHHHhcC
Confidence 7777777666655444444456699999999875 4789999999999999985 222388889999888777777654
No 58
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.67 E-value=0.003 Score=78.33 Aligned_cols=269 Identities=17% Similarity=0.164 Sum_probs=184.6
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
..+..++..|+.+ |..++..|+.-|+.+++-+... .......-++.-|...|+..++.+.+..|++||.+|+.. ++.
T Consensus 101 ~~~~~fl~lL~~~-d~~i~~~a~~iLt~l~~~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~ 177 (429)
T cd00256 101 KTWEPFFNLLNRQ-DQFIVHMSFSILAKLACFGLAK-MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEY 177 (429)
T ss_pred cchHHHHHHHcCC-chhHHHHHHHHHHHHHhcCccc-cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chH
Confidence 4566777777765 8899999999999998865432 111111124556667777666688899999999999875 468
Q ss_pred hhhhcccccHHHHHHHHhcC-C-cHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhcc-CChHHHHHHHHHHHHh
Q 000286 92 CAAVVHYGAVTCFVARLLTI-E-YMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDF-FSTGVQRVALSTAANM 166 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~-~-~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNl 166 (1720)
+..+++++.|+.|+ .+|.. . ...++-+++-|+--+|-+... .....+.++.++.++.. ....+.|.++.++.|+
T Consensus 178 R~~f~~~~~v~~L~-~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nl 256 (429)
T cd00256 178 RFAFVLADGVPTLV-KLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNL 256 (429)
T ss_pred HHHHHHccCHHHHH-HHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888889999999 66654 2 568888777777777655442 34567889999999974 4678999999999999
Q ss_pred ccCCC----C--chhHHHh-CcHHHHHHhh--ccCCHHHHHHHHHHHHHHHhhc----------------------CCC-
Q 000286 167 CKKLP----S--DAADFVM-EAVPLLTNLL--QYHDAKVLEHASVCLTRIAEAF----------------------ASS- 214 (1720)
Q Consensus 167 c~~~~----~--~~~~~v~-~~lP~L~~LL--~~~D~~V~e~A~~aLs~L~~~~----------------------~~~- 214 (1720)
+.... . ....++. ++++.|..+. +..|+++.++.-..-..|-..+ .|.
T Consensus 257 l~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~s 336 (429)
T cd00256 257 ISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKS 336 (429)
T ss_pred hhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCC
Confidence 98431 1 1123344 4555555553 2468888776544433332221 121
Q ss_pred ----HHHHHHHHhC--CcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000286 215 ----PDKLDELCNH--GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1720)
Q Consensus 215 ----~~~~~~li~~--gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1720)
.++...+-+. .++..|+++|..++ ++.+..-|+.=||.+++.-|.-...+-+.|+=..+.+|+++.
T Consensus 337 e~FW~EN~~kf~~~~~~llk~L~~iL~~s~--------d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~ 408 (429)
T cd00256 337 EKFWRENADRLNEKNYELLKILIHLLETSV--------DPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE 408 (429)
T ss_pred chHHHHHHHHHHhcchHHHHHHHHHHhcCC--------CcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC
Confidence 2445555544 38999999996543 344555677778999999888777666799999999999987
Q ss_pred Cccc
Q 000286 289 GVSA 292 (1720)
Q Consensus 289 ~~~~ 292 (1720)
++..
T Consensus 409 d~~V 412 (429)
T cd00256 409 DPNV 412 (429)
T ss_pred CHHH
Confidence 7533
No 59
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0011 Score=87.73 Aligned_cols=238 Identities=18% Similarity=0.220 Sum_probs=163.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~ 93 (1720)
++.+-..|++. +...+..||.+|+-+.-.+...... .-..+++..+..|++++ |.++..||-||.-|+...+...+
T Consensus 350 ~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~--~l~~Il~~Vl~~l~Dph-prVr~AA~naigQ~stdl~p~iq 425 (1075)
T KOG2171|consen 350 FEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIG--NLPKILPIVLNGLNDPH-PRVRYAALNAIGQMSTDLQPEIQ 425 (1075)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHH--HHHHHHHHHHhhcCCCC-HHHHHHHHHHHHhhhhhhcHHHH
Confidence 33444456776 9999999999998887766433222 33457888899999886 99999999999999998877776
Q ss_pred hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhh---cCchhHHhhhh-ccCChHHHHHHHHHHHHhccC
Q 000286 94 AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLR---AGALMAVLSYL-DFFSTGVQRVALSTAANMCKK 169 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~---~GgL~~LL~lL-d~~~~~vqr~Al~aLsNlc~~ 169 (1720)
.--..-++|.|+..|-....+.++-.|.-||-|.+.++++.++. .+.+.+++.+| ...+..+|..++.+|+..+..
T Consensus 426 k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 426 KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 66655677788855555667899999999999999999987665 34445344444 466888999999999998875
Q ss_pred CCCchhHHHhCcHHHHHHhhccCC----HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCC
Q 000286 170 LPSDAADFVMEAVPLLTNLLQYHD----AKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1720)
Q Consensus 170 ~~~~~~~~v~~~lP~L~~LL~~~D----~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ 245 (1720)
....=..+..-++|.|.++|++.+ ..+.-++.-|++-|+... ..+.+. .....+++++.... ++...
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AV-----Gke~F~--~~a~eliqll~~~~--~~~~~ 576 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAV-----GKEKFL--PLAEELIQLLLELQ--GSDQD 576 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHh-----hhhhhh--HhHHHHHHHHHhhc--ccchh
Confidence 444444456778999999998765 334445556766666531 111221 12333444443221 11222
Q ss_pred CChhHHHHHHHHHHHHhcC
Q 000286 246 LSTPTYTGLIRLLSTCASG 264 (1720)
Q Consensus 246 ls~~i~~~alr~L~nLas~ 264 (1720)
.+.....-.+...++||+.
T Consensus 577 ~dd~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 577 DDDPLRSYMIAFWARMCRI 595 (1075)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 3444566667777777753
No 60
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0035 Score=75.32 Aligned_cols=217 Identities=18% Similarity=0.195 Sum_probs=148.9
Q ss_pred cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Q 000286 51 TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1720)
Q Consensus 51 ~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1720)
.+....+|..||+.|... |.++-.....-|..+.-. .++...+++.|+|..|+ +|..++.+|++...+..|-|+|-+
T Consensus 299 KMrrkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~-klfp~~h~dL~~~tl~LlfNlSFD 375 (791)
T KOG1222|consen 299 KMRRKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLL-KLFPIQHPDLRKATLMLLFNLSFD 375 (791)
T ss_pred HHHHHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHH-HhcCCCCHHHHHHHHHHhhhcccc
Confidence 466778999999999866 578777777777776543 46777888999999999 999999999999999999999998
Q ss_pred Ccc--hhhhcCchhHHhhhhccCChHHHHHHHHHH------------------------------------------HHh
Q 000286 131 HPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTA------------------------------------------ANM 166 (1720)
Q Consensus 131 ~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aL------------------------------------------sNl 166 (1720)
... ..+..|-+|.+..+|+..+-+ ..|+.++ .|+
T Consensus 376 ~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl 453 (791)
T KOG1222|consen 376 SGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINL 453 (791)
T ss_pred ccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHH
Confidence 775 688999999999999753321 1122222 344
Q ss_pred ccCCCCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCC
Q 000286 167 CKKLPSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1720)
Q Consensus 167 c~~~~~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ 245 (1720)
|.+....+..+.-..+..|... +++.|.-+.. .+.+|.. |.......+++ .|.-|...+...+
T Consensus 454 ~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK----~vRniSq---Heg~tqn~Fid--yvgdLa~i~~nd~------- 517 (791)
T KOG1222|consen 454 CLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMK----VVRNISQ---HEGATQNMFID--YVGDLAGIAKNDN------- 517 (791)
T ss_pred HhccccceEEecCcchHHHHHHHhcccchHHHH----HHHHhhh---ccchHHHHHHH--HHHHHHHHhhcCc-------
Confidence 4444333333333344444444 4555543322 2334443 12223333333 3555666666654
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC
Q 000286 246 LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 246 ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1720)
+......|+.+|+|+.-.+-.-.+.|-+.+++|.+.+.|....
T Consensus 518 -~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga 560 (791)
T KOG1222|consen 518 -SESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGA 560 (791)
T ss_pred -hHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCc
Confidence 5667888999999998877777787778899999999887544
No 61
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0061 Score=76.14 Aligned_cols=109 Identities=18% Similarity=0.136 Sum_probs=84.8
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcC--chhHHhhhhccCChHHHHHHHHHHHHhccCC-CCchhHH
Q 000286 101 VTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAG--ALMAVLSYLDFFSTGVQRVALSTAANMCKKL-PSDAADF 177 (1720)
Q Consensus 101 Vp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~G--gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~-~~~~~~~ 177 (1720)
.|.|- ..|.++.=-++|.++-|||-||..+-+-++..= .++.++++|+....-+.+..+|+++...... .......
T Consensus 395 ~PlLk-~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~ 473 (885)
T KOG2023|consen 395 LPLLK-EHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEY 473 (885)
T ss_pred HHHHH-HHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhh
Confidence 44444 777778889999999999999988776544432 5688888999989999999999999988843 2223345
Q ss_pred HhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 178 VMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 178 v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
...++..|.+.+-..+++|+|.||.+++-+-+.
T Consensus 474 f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 474 FKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 566666666667788999999999999988875
No 62
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.39 E-value=0.028 Score=67.84 Aligned_cols=352 Identities=14% Similarity=0.172 Sum_probs=213.9
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhc------ccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVV------HYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 56 g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV------~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
..+..++.+|...+..+....+.--+.-|...++.-...+- ..-.-+.++ .||.-.+.=+.++..|.|..++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl-~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFL-NLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHH-HHHhcCChHHHHHHHHHHHHHHH
Confidence 47899999998776666555544445555544332222211 112355667 78888888889999999999986
Q ss_pred cCcchhhhcCchhHHhhhhc----c-CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhh--ccCCHHHHHHHHH
Q 000286 130 EHPTACLRAGALMAVLSYLD----F-FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL--QYHDAKVLEHASV 202 (1720)
Q Consensus 130 ~~~~~Il~~GgL~~LL~lLd----~-~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL--~~~D~~V~e~A~~ 202 (1720)
-.. ..+..+.+..+..+|. . .+....-.|+.|+.-+.+-.+....-...+.+..|+..| ++.+-.++-+.|.
T Consensus 144 ~g~-~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 144 FGN-CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred hcc-ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 544 2233334444444442 2 344455567888888888666655445566677777776 3447788888999
Q ss_pred HHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCH------HHHHHHHHcC
Q 000286 203 CLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSP------LCAKTLLHLG 276 (1720)
Q Consensus 203 aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~------~~t~~Ll~~g 276 (1720)
|+--|+- ++...+.+...++++.|..++.++- ...+..-++.++.|++...+ +....++.++
T Consensus 223 ciWlLtF----n~~~ae~~~~~~li~~L~~Ivk~~~--------KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~ 290 (442)
T KOG2759|consen 223 CIWLLTF----NPHAAEKLKRFDLIQDLSDIVKEST--------KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK 290 (442)
T ss_pred HHHHhhc----CHHHHHHHhhccHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC
Confidence 9888886 6777788878899999999998762 45677777888889998874 6778899999
Q ss_pred ChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCC
Q 000286 277 ISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTN 356 (1720)
Q Consensus 277 il~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 356 (1720)
+++++..|... .|+ .+.|.+-|+++.+-|-.-.....+.+-|...+..|.+++.+.. +.+
T Consensus 291 v~k~l~~L~~r-----kys--------DEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~H----k~e--- 350 (442)
T KOG2759|consen 291 VLKTLQSLEER-----KYS--------DEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVH----KSE--- 350 (442)
T ss_pred chHHHHHHHhc-----CCC--------cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccc----ccc---
Confidence 99999888763 221 1222222222222111111111111112222233555543320 000
Q ss_pred CCccchhhHHHhhccCHHHHHHHH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHH
Q 000286 357 GNASEVSAREKLLSDQPELLQQFG---MDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLA 433 (1720)
Q Consensus 357 ~~~~~~~~r~~~~~~~pe~~~~f~---~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la 433 (1720)
.+-.++ +.+|. -.|+-+|+.+..++.++.|=.-++.-|--.|-+...- +.++....--.-+.
T Consensus 351 ----------~FW~eN---a~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g--k~vv~k~ggKe~vM 415 (442)
T KOG2759|consen 351 ----------KFWREN---ADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG--KAVVEKYGGKERVM 415 (442)
T ss_pred ----------chHHHh---HHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH--hHHHHHhchHHHHH
Confidence 011111 22222 2677788888888888754433333344444333221 23344445556677
Q ss_pred HHhhcCCCchHHhHHHHHHHHHh
Q 000286 434 GVLAWKDPHVLIPSLQIAEILME 456 (1720)
Q Consensus 434 ~il~~~d~~lv~~aL~i~~~Ll~ 456 (1720)
.+++++|+.+-..||+.+..||-
T Consensus 416 ~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 416 NLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHhcCCCchHHHHHHHHHHHHHh
Confidence 88999999999999999999984
No 63
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.34 E-value=0.0014 Score=75.58 Aligned_cols=191 Identities=19% Similarity=0.192 Sum_probs=123.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcCC-Cccccccc--ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccc
Q 000286 22 RADGEEGKQVEALTQLCEMLSIGT-EESLSTFS--VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHY 98 (1720)
Q Consensus 22 ~s~~D~~~ql~Al~~L~~lL~~~~-~~~l~~~~--~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~ 98 (1720)
..+.|-..+.+|+..|+.++.... ......+. ...++..++..+.+. ...+...||.+|..|+..........+ .
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYA-D 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-H
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHH-H
Confidence 455689999999999999998761 11111111 124556677777644 467888999999999987766655554 3
Q ss_pred ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc--chhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCC--Cch
Q 000286 99 GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP--TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP--SDA 174 (1720)
Q Consensus 99 GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~--~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~--~~~ 174 (1720)
..+|.|+ +++.....-+++.|..||..|....+ ..++ +..+...+.+.+..+...++..+..+....+ ...
T Consensus 94 ~~l~~Ll-~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 94 ILLPPLL-KKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHH-HGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHH-HHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 5889999 78788888999999999999998665 2221 4455556677788888889988888888655 222
Q ss_pred hH---HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000286 175 AD---FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1720)
Q Consensus 175 ~~---~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li 222 (1720)
+. .+..+++.|...+...+++|.+.|-.++..+... -++..+.++
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~---~~~~a~~~~ 216 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH---FPERAESIL 216 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH---H-HHH----
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH---CCHhhccch
Confidence 22 2467899999999999999999999999888775 444444444
No 64
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.33 E-value=0.0053 Score=77.20 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhh
Q 000286 71 PDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSY 147 (1720)
Q Consensus 71 ~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~l 147 (1720)
.+....||-|+.+++..-..-....-...++.+|+ +|+.-+..-+.-.++.+|.|+--+..+ ..++.||+..++.+
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plv-qll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLV-QLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHH-HHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 33444555555555432111122244556788899 888889999999999999999987665 69999999999999
Q ss_pred hccCChHHHHHHHHHHHHhccCCC-CchhHHHhC-cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC-
Q 000286 148 LDFFSTGVQRVALSTAANMCKKLP-SDAADFVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH- 224 (1720)
Q Consensus 148 Ld~~~~~vqr~Al~aLsNlc~~~~-~~~~~~v~~-~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~- 224 (1720)
+..++..+..+++|++.++.-+.. ...+...+. ....|..+++.+|..|++++...+.|++.+ ..+.++-+++.
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~---~~~svdfll~~~ 546 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN---SRKSVDFLLEKF 546 (678)
T ss_pred hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC---cHHHHHHHHHhh
Confidence 999999999999999999988653 333333333 356677888999999999999999999997 77788888765
Q ss_pred -CcHHHHHHhh
Q 000286 225 -GLVTQAATLI 234 (1720)
Q Consensus 225 -gll~~Lv~LL 234 (1720)
.++..+.-.+
T Consensus 547 ~~~ld~i~l~l 557 (678)
T KOG1293|consen 547 KDVLDKIDLQL 557 (678)
T ss_pred hHHHHHHHHHH
Confidence 3444544444
No 65
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.31 E-value=0.005 Score=75.50 Aligned_cols=414 Identities=15% Similarity=0.154 Sum_probs=230.1
Q ss_pred chHHHHHHHh-hcCCCHHHHHHHHHHHHHHHhc-CCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000286 12 GRLKKILSGL-RADGEEGKQVEALTQLCEMLSI-GTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 12 ~~l~~Ll~~L-~s~~D~~~ql~Al~~L~~lL~~-~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p 89 (1720)
.-+-.++.+- +.+.+...++.||.+|-.-|-. .++-. ..--..=+....++.-+.+ +.++|..|-.||..|+.-.-
T Consensus 176 ~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~-~E~erNy~mqvvceatq~~-d~e~q~aafgCl~kim~LyY 253 (858)
T COG5215 176 VILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFC-YEEERNYFMQVVCEATQGN-DEELQHAAFGCLNKIMMLYY 253 (858)
T ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhc-chhhhchhheeeehhccCC-cHHHHHHHHHHHHHHHHHHH
Confidence 3444555554 3444678889998888763321 11100 0011112455666666666 49999999999999987665
Q ss_pred cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hh-----------------hhcCchhHHhhhhcc
Q 000286 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--AC-----------------LRAGALMAVLSYLDF 150 (1720)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~I-----------------l~~GgL~~LL~lLd~ 150 (1720)
.......+ .++-.|.-+.+.+++.+++-|++.--.-||.+..+ .. --...+|-+|.+|..
T Consensus 254 ~fm~~ymE-~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~ 332 (858)
T COG5215 254 KFMQSYME-NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEK 332 (858)
T ss_pred HHHHHHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHh
Confidence 55554444 56666666889999999999999887777765332 10 013378888998843
Q ss_pred C---------ChHH-HHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHH
Q 000286 151 F---------STGV-QRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDE 220 (1720)
Q Consensus 151 ~---------~~~v-qr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~ 220 (1720)
. ++++ --.|+...+.+|.+ .+++.++..+-.-+++++-.=.+.|..+|..+.++ ...+.+-.
T Consensus 333 q~ed~~~DdWn~smaA~sCLqlfaq~~gd------~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g--p~~~~lT~ 404 (858)
T COG5215 333 QGEDYYGDDWNPSMAASSCLQLFAQLKGD------KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG--PCEDCLTK 404 (858)
T ss_pred cCCCccccccchhhhHHHHHHHHHHHhhh------HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC--ccHHHHHh
Confidence 1 2222 22344445555543 23555677777778999999999999999999997 44555555
Q ss_pred HHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHH-cC-ChHHHHHhhcCCC---c---cc
Q 000286 221 LCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLH-LG-ISGILKDILSGSG---V---SA 292 (1720)
Q Consensus 221 li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~-~g-il~~L~~LL~~~~---~---~~ 292 (1720)
++ +.++|-+..++..+ +.-++....||++.|+.. .-.+|+ ++ +......+|.|-. . .+
T Consensus 405 ~V-~qalp~i~n~m~D~---------~l~vk~ttAwc~g~iad~----va~~i~p~~Hl~~~vsa~liGl~D~p~~~~nc 470 (858)
T COG5215 405 IV-PQALPGIENEMSDS---------CLWVKSTTAWCFGAIADH----VAMIISPCGHLVLEVSASLIGLMDCPFRSINC 470 (858)
T ss_pred hH-HhhhHHHHHhcccc---------eeehhhHHHHHHHHHHHH----HHHhcCccccccHHHHHHHhhhhccchHHhhh
Confidence 55 45788888888754 345778889999999864 223344 44 3344444444421 1 45
Q ss_pred ccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccC
Q 000286 293 NSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQ 372 (1720)
Q Consensus 293 ~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 372 (1720)
+|+..++ .+|+..+.+-....|-+. ++++...+.+|+-. + ..+...|..++..=
T Consensus 471 sw~~~nl----v~h~a~a~~~~~S~l~~f------Y~ai~~~Lv~~t~~-~---------------~Ne~n~R~s~fsaL 524 (858)
T COG5215 471 SWRKENL----VDHIAKAVREVESFLAKF------YLAILNALVKGTEL-A---------------LNESNLRVSLFSAL 524 (858)
T ss_pred HHHHHhH----HHhhhhhhccccchhHHH------HHHHHHHHHHHHHh-h---------------ccchhHHHHHHHHH
Confidence 6665432 233333332000000000 00011111111100 0 01233455444332
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHH
Q 000286 373 PELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAE 452 (1720)
Q Consensus 373 pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~ 452 (1720)
-.++..--..+.|++..+|.-+..- =-.|...+-.+..-=+...++++. .++...|+.|+...-+++--.+=|+.+
T Consensus 525 gtli~~~~d~V~~~~a~~~~~~~~k--l~~~isv~~q~l~~eD~~~~~elq--SN~~~vl~aiir~~~~~ie~v~D~lm~ 600 (858)
T COG5215 525 GTLILICPDAVSDILAGFYDYTSKK--LDECISVLGQILATEDQLLVEELQ--SNYIGVLEAIIRTRRRDIEDVEDQLME 600 (858)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHH--HHHHHHHhhhhhhhHHHHHHHHHH--HHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 2222111134456666665443221 123444444444332333333333 367788888887655544444444444
Q ss_pred HHHhhCchhhhhhHHhhcHHHHHHHHHhc
Q 000286 453 ILMEKLPGTFSKMFVREGVVHAVDQLILA 481 (1720)
Q Consensus 453 ~Ll~K~pd~f~~~f~REGV~~~I~~L~~~ 481 (1720)
++++-+... .+.|..+-|+..|..|+..
T Consensus 601 Lf~r~les~-~~t~~~~dV~~aIsal~~s 628 (858)
T COG5215 601 LFIRILEST-KPTTAFGDVYTAISALSTS 628 (858)
T ss_pred HHHHHHhcc-CCchhhhHHHHHHHHHHHH
Confidence 444444333 6788999999999999875
No 66
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.28 E-value=0.016 Score=69.78 Aligned_cols=266 Identities=17% Similarity=0.173 Sum_probs=188.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~ 93 (1720)
....+..|... |..++-.+.+-++++.+.++.. +....-.=...-|...|++.++++-...|+|||--++.. ++.+.
T Consensus 116 ~~~fl~ll~r~-d~~iv~~~~~Ils~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~ 192 (442)
T KOG2759|consen 116 WLSFLNLLNRQ-DTFIVEMSFRILSKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRY 192 (442)
T ss_pred hHHHHHHHhcC-ChHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhh
Confidence 45566677665 8888887889998888877532 111111113445566667666788888999999998875 57888
Q ss_pred hhcccccHHHHHHHHh-cCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhcc-CChHHHHHHHHHHHHhccC
Q 000286 94 AVVHYGAVTCFVARLL-TIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDF-FSTGVQRVALSTAANMCKK 169 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL-~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNlc~~ 169 (1720)
.+|.+..+..|+..|. ......++-|.+-|+-.++-..+- .+-..+.++.|...+.. ....+.|.++.++.|+|.+
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999899999994442 334588888877777777654442 35666788888888875 4678999999999999997
Q ss_pred CCCc------hhHHH-hCcHHHHHHhh--ccCCHHHHHHHHHHHHHHHhhc----------------------CCC----
Q 000286 170 LPSD------AADFV-MEAVPLLTNLL--QYHDAKVLEHASVCLTRIAEAF----------------------ASS---- 214 (1720)
Q Consensus 170 ~~~~------~~~~v-~~~lP~L~~LL--~~~D~~V~e~A~~aLs~L~~~~----------------------~~~---- 214 (1720)
.+.. ...++ .++.+.+..|. .+.|++++++.-..-..|.+.. .|.
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 6411 12233 35666666664 3678888877665555554431 011
Q ss_pred -HHHHHHHHhC--CcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCc
Q 000286 215 -PDKLDELCNH--GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV 290 (1720)
Q Consensus 215 -~~~~~~li~~--gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1720)
.++...+.+. .++..|+.+|..++ ++.+..-|+.=|+..++..|+....+.+-|+=+.+..||+++++
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~--------Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~ 423 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSN--------DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDP 423 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCC--------CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCc
Confidence 2455556644 48999999998764 45566677888999999999998888889999999999999876
No 67
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.24 Score=63.43 Aligned_cols=329 Identities=18% Similarity=0.215 Sum_probs=194.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
-+-.+|.+.|.+. |.+.+.+|+..+-.+++.++. +| +++-.++++.--..+-+++ +.|+++.+..|..
T Consensus 20 ~~~~~ik~~Lek~-~~~~KIeamK~ii~~mlnGe~-----~p--~Llm~IiRfvlps~~~elK----KLly~ywE~vPKt 87 (948)
T KOG1058|consen 20 MSEDEIKEKLEKG-DDEVKIEAMKKIIALMLNGED-----LP--SLLMTIIRFVLPSRNHELK----KLLYYYWELVPKT 87 (948)
T ss_pred cchHHHHHHHhcC-ChHHHHHHHHHHHHHHHcCCC-----ch--HHHHHHhheeeccCchHHH----HHHHHHHHHcccc
Confidence 3445677888876 778899999988888777643 11 1333333333222345666 3556665554432
Q ss_pred hh--hhcccccHHHHHH---HHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHh
Q 000286 92 CA--AVVHYGAVTCFVA---RLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1720)
Q Consensus 92 ~~--~vV~~GaVp~Lv~---kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1720)
.. .+.. .. =.+|+ +=|++++.-++-..+.-|+++ ....++ ..-++.+.+.|++...-+.|+|+.|+..+
T Consensus 88 ~~dgkl~~-EM-ILvcna~RkDLQHPNEyiRG~TLRFLckL---kE~ELl-epl~p~IracleHrhsYVRrNAilaifsI 161 (948)
T KOG1058|consen 88 DSDGKLLH-EM-ILVCNAYRKDLQHPNEYIRGSTLRFLCKL---KEPELL-EPLMPSIRACLEHRHSYVRRNAILAIFSI 161 (948)
T ss_pred CCCcccHH-HH-HHHHHHHhhhccCchHhhcchhhhhhhhc---CcHHHh-hhhHHHHHHHHhCcchhhhhhhheeehhH
Confidence 22 0100 00 01121 335667777776555555544 222233 34678888899999999999999999888
Q ss_pred ccCCCCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCC
Q 000286 167 CKKLPSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1720)
Q Consensus 167 c~~~~~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ 245 (1720)
-++. ...+.++-..+... +...|+.+..+|...|..+- +++. +.-|...+.. -++
T Consensus 162 yk~~----~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D------~ErA--------l~Yl~~~idq------i~~ 217 (948)
T KOG1058|consen 162 YKNF----EHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTD------PERA--------LNYLLSNIDQ------IPS 217 (948)
T ss_pred Hhhh----hhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcC------HHHH--------HHHHHhhHhh------ccC
Confidence 7651 12345555555555 45679999998877664332 2221 1111111110 122
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcc----cccccccccCCCHHHHHHHHHHhhccCCCC
Q 000286 246 LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS----ANSAVPPALSRPAEQIFEIVNLANELLPPL 321 (1720)
Q Consensus 246 ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~----~~~~~s~i~~~~~~qi~~vi~li~~LLP~L 321 (1720)
++...+..++..+...|-.++...... +.+|+.+|+..... +..++.. +...++-+....+-+..|+-..
T Consensus 218 ~~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv~-lS~~p~alk~Aa~~~i~l~~ke 291 (948)
T KOG1058|consen 218 FNDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLVT-LSNDPTALKAAASTYIDLLVKE 291 (948)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEEE-ccCCHHHHHHHHHHHHHHHHhc
Confidence 456677777888888887777654444 45889999877542 2222211 3345555655555344444433
Q ss_pred CCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhcc-CHHHHHHHHHHHHHHHHHHHhccCCHHHH
Q 000286 322 PQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSD-QPELLQQFGMDLLPVLIQIYGSSVNSPVR 400 (1720)
Q Consensus 322 ~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~pe~~~~f~~~llP~L~~vy~ss~~~~VR 400 (1720)
.++- .+-....|..-++. +...++-++.+++++| ++.|.+||
T Consensus 292 sdnn--------------------------------vklIvldrl~~l~~~~~~il~~l~mDvLrvL-----ss~dldvr 334 (948)
T KOG1058|consen 292 SDNN--------------------------------VKLIVLDRLSELKALHEKILQGLIMDVLRVL-----SSPDLDVR 334 (948)
T ss_pred cCcc--------------------------------hhhhhHHHHHHHhhhhHHHHHHHHHHHHHHc-----CcccccHH
Confidence 3311 11233455555543 4445677777777766 78999999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHhhhc
Q 000286 401 HKCLSVIGKLMYFSSAEMIQSLLSV 425 (1720)
Q Consensus 401 ~~~L~~l~r~v~~~~~~~L~~~l~~ 425 (1720)
+|||...+.+++.-+-+.+..+++.
T Consensus 335 ~Ktldi~ldLvssrNvediv~~Lkk 359 (948)
T KOG1058|consen 335 SKTLDIALDLVSSRNVEDIVQFLKK 359 (948)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHH
Confidence 9999999999999998877666554
No 68
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.07 E-value=0.18 Score=63.73 Aligned_cols=376 Identities=19% Similarity=0.188 Sum_probs=202.3
Q ss_pred HHHHHHHhhcCCCH--HHHHHHHHHHHHHHhcCCCccc-ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 14 LKKILSGLRADGEE--GKQVEALTQLCEMLSIGTEESL-STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~--~~ql~Al~~L~~lL~~~~~~~l-~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
++.+++.|..+++. ......+..|+++.. ++.+ ..+.. .++..|...++.+.+.+....++.+|.++++...+
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~---~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~ 76 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALST---SPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQE 76 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHC---ChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccc
Confidence 46788888655222 334444455544433 3322 22222 44444444444444677888999999999876544
Q ss_pred ch---h--hhcccccHHHHHHHHhcCCc------HHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhc---------c
Q 000286 91 SC---A--AVVHYGAVTCFVARLLTIEY------MDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD---------F 150 (1720)
Q Consensus 91 ~~---~--~vV~~GaVp~Lv~kLL~~~~------~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd---------~ 150 (1720)
.. . ...+..+||.|.+..+.... ..+.+.+...+..|.+.-+.. -+...+..+..++- .
T Consensus 77 ~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~-~q~~~~~~~~~lf~~~~~~~~~~~ 155 (415)
T PF12460_consen 77 DKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPE-KQQEILDELYSLFLSPKSFSPFQP 155 (415)
T ss_pred ccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHccccccCCCCc
Confidence 44 1 22333488888844444322 344444555555555443321 00011222222221 0
Q ss_pred CC--h-HHHHHHHHHHHHhccCCC-CchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC
Q 000286 151 FS--T-GVQRVALSTAANMCKKLP-SDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG 225 (1720)
Q Consensus 151 ~~--~-~vqr~Al~aLsNlc~~~~-~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~g 225 (1720)
.. . ..++..+.....+....+ ...+....+.+..+..+ +...++.+...++.+++-|+..+.. .+.++.++
T Consensus 156 ~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~-~~~l~~~l--- 231 (415)
T PF12460_consen 156 SSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD-DDDLDEFL--- 231 (415)
T ss_pred cccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC-hhhHHHHH---
Confidence 11 1 244454444444433222 22222344577777777 5566788999999999999986422 23333333
Q ss_pred cHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHH-hcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCH
Q 000286 226 LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTC-ASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPA 304 (1720)
Q Consensus 226 ll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nL-as~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~ 304 (1720)
..+..-+... .+.......+.-.+|+.--+ .++++...+ + +..|..+|.+... .
T Consensus 232 --~~~~~~~~~~----~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~-~-----~~~L~~lL~~~~~--g----------- 286 (415)
T PF12460_consen 232 --DSLLQSISSS----EDSELRPQALEILIWITKALVMRGHPLATE-L-----LDKLLELLSSPEL--G----------- 286 (415)
T ss_pred --HHHHhhhccc----CCcchhHHHHHHHHHHHHHHHHcCCchHHH-H-----HHHHHHHhCChhh--H-----------
Confidence 3333333111 12223444555555555544 345444322 2 3356666665111 0
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHH
Q 000286 305 EQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLL 384 (1720)
Q Consensus 305 ~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~ll 384 (1720)
..+..... -|+-.. ++..+ + ..-..++ +=.-|+|...++
T Consensus 287 ~~aA~~f~---il~~d~-~~~l~--------------~------------------~~~a~vk-----lLykQR~F~~~~ 325 (415)
T PF12460_consen 287 QQAAKAFG---ILLSDS-DDVLN--------------K------------------ENHANVK-----LLYKQRFFTQVL 325 (415)
T ss_pred HHHHHHHh---hHhcCc-HHhcC--------------c------------------cccchhh-----hHHhHHHHHHHH
Confidence 11111111 111100 00000 0 0000001 112378889999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHHhhCchhhhh
Q 000286 385 PVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSK 464 (1720)
Q Consensus 385 P~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll~K~pd~f~~ 464 (1720)
|.|++-|.++.+. +|..+|.|+.-++.+++.+.+..=+. .+-.++..-|...|..+...+|++...+++..|+++..
T Consensus 326 p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~--~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 326 PKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSVLLPELP--TLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 9999999987665 99999999999999999887664332 24455666678888899999999999999999998888
Q ss_pred hHH
Q 000286 465 MFV 467 (1720)
Q Consensus 465 ~f~ 467 (1720)
++.
T Consensus 403 hl~ 405 (415)
T PF12460_consen 403 HLS 405 (415)
T ss_pred HHH
Confidence 665
No 69
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.90 E-value=0.0042 Score=60.04 Aligned_cols=87 Identities=28% Similarity=0.341 Sum_probs=68.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~ 93 (1720)
++.|++.|..+.|+.++..|+..|++ +....++|.|+++|+++ ++.++..|+++|..|-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~------------~~~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~-------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGE------------LGDPEAIPALIELLKDE-DPMVRRAAARALGRIG-------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHC------------CTHHHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHH------------cCCHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--------
Confidence 57899999555699999999999972 22336799999999765 6999999999999883
Q ss_pred hhcccccHHHHHHHHhcC-CcHHHHHHHHHHHH
Q 000286 94 AVVHYGAVTCFVARLLTI-EYMDLAEQSLQALK 125 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~-~~~dl~Eqal~aL~ 125 (1720)
+..+++.|+ +++.. ....+++.|+++|+
T Consensus 60 ---~~~~~~~L~-~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALI-KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHH-HHHTC-SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHH-HHHcCCCcHHHHHHHHhhcC
Confidence 234889999 55554 56677999999985
No 70
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.41 Score=61.27 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
..++..|++. -|+++..|+-.|-++.+.-.+ .+ ....|+|++=|.+++ |.+|..|+-+++-++.-+|.+.
T Consensus 147 ~Dv~tLL~ss-kpYvRKkAIl~lykvFLkYPe-Al-----r~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 147 DDVFTLLNSS-KPYVRKKAILLLYKVFLKYPE-AL-----RPCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHHHhcC-chHHHHHHHHHHHHHHHhhhH-hH-----hhhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccc
Confidence 4455555544 555555555555555554432 11 122455555555543 5555555555555555555443
No 71
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.88 E-value=0.0067 Score=72.62 Aligned_cols=175 Identities=18% Similarity=0.155 Sum_probs=128.3
Q ss_pred ccccCcHHHHHHhhcCCCCHH--HHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 52 FSVDSFAPVLVGLLNHESNPD--IMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 52 ~~~~g~Vp~LV~lL~~~~~~e--iq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
+-.+|.+..|++++..+. .+ +..+|++.|-.+.. .++...|+.-| ...+++.--.....+++..++..|+++-.
T Consensus 176 iR~~~~lD~Llrmf~aPn-~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPN-LETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hhccchHHHHHHHHhCCc-hhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 445678889999998763 44 47799999998876 35677787776 44444233345678999999999999988
Q ss_pred cCcc---hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCC--CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000286 130 EHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKL--PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCL 204 (1720)
Q Consensus 130 ~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~--~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aL 204 (1720)
++.. .++..|+|.+++....-.++.+.|+|+.++.||+-.- ....-.+.+.+-..|..|-.+.|.-..-.||.++
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 7665 5889999999999998889999999999999998733 2222233345666777777777888899999999
Q ss_pred HHHHhhcCCCHHHHHHHHhCC---cHHHHHHhh
Q 000286 205 TRIAEAFASSPDKLDELCNHG---LVTQAATLI 234 (1720)
Q Consensus 205 s~L~~~~~~~~~~~~~li~~g---ll~~Lv~LL 234 (1720)
+-|+.. .+--..+-..| +++.++..+
T Consensus 332 ~vlat~----KE~E~~VrkS~TlaLVEPlva~~ 360 (832)
T KOG3678|consen 332 AVLATN----KEVEREVRKSGTLALVEPLVASL 360 (832)
T ss_pred hhhhhh----hhhhHHHhhccchhhhhhhhhcc
Confidence 999973 33333344444 444444444
No 72
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.87 E-value=0.0035 Score=60.61 Aligned_cols=87 Identities=28% Similarity=0.331 Sum_probs=69.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhh
Q 000286 58 APVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLR 137 (1720)
Q Consensus 58 Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~ 137 (1720)
||.|++.|..+.++.++..|+++|+++-. ..++|.|+ .++..++..++.+|+++|+.|- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~-~~l~d~~~~vr~~a~~aL~~i~--------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALI-ELLKDEDPMVRRAAARALGRIG--------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHH-HHHTSSSHHHHHHHHHHHHCCH--------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHH-HHHcCCCHHHHHHHHHHHHHhC--------C
Confidence 68999999555679999999999995532 14799999 7889999999999999999994 2
Q ss_pred cCchhHHhhhhccC-ChHHHHHHHHHHH
Q 000286 138 AGALMAVLSYLDFF-STGVQRVALSTAA 164 (1720)
Q Consensus 138 ~GgL~~LL~lLd~~-~~~vqr~Al~aLs 164 (1720)
...++.|..++... +..+++.|+++|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34788888888764 4556778888774
No 73
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.007 Score=75.65 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=119.3
Q ss_pred cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch----hhh---cCchhHHhhhhccCChHHHHHHHHHHHHhccCCCC
Q 000286 100 AVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA----CLR---AGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPS 172 (1720)
Q Consensus 100 aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~----Il~---~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~ 172 (1720)
.+|.|| .||++++....|-|..||.+|+.|++.. +.. .-.++.+++|..+.++.+...|+.|+....-..+.
T Consensus 129 lLp~L~-~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 129 LLPQLC-ELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred HHHHHH-HHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 589999 9999999999999999999999987752 221 22578888899999999999999999887766666
Q ss_pred chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC--CcHHHHHHhhcCCCCCCCCCCCChhH
Q 000286 173 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH--GLVTQAATLISTSNSGGGQASLSTPT 250 (1720)
Q Consensus 173 ~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~--gll~~Lv~LL~~~~~~~~~~~ls~~i 250 (1720)
.-...+-..+..|..+-+.+|++|..+.|.+|..|.+- .++ .++-+ ++++-+++..... +.++
T Consensus 208 al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev---r~d---kl~phl~~IveyML~~tqd~---------dE~V 272 (885)
T KOG2023|consen 208 ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV---RPD---KLVPHLDNIVEYMLQRTQDV---------DENV 272 (885)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh---cHH---hcccchHHHHHHHHHHccCc---------chhH
Confidence 66667778899999999999999999999999999985 444 44433 3555555544443 5778
Q ss_pred HHHHHHHHHHHhcCC
Q 000286 251 YTGLIRLLSTCASGS 265 (1720)
Q Consensus 251 ~~~alr~L~nLas~s 265 (1720)
-..|+.....+|...
T Consensus 273 ALEACEFwla~aeqp 287 (885)
T KOG2023|consen 273 ALEACEFWLALAEQP 287 (885)
T ss_pred HHHHHHHHHHHhcCc
Confidence 889999999998775
No 74
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.056 Score=69.71 Aligned_cols=381 Identities=17% Similarity=0.143 Sum_probs=216.2
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
+.+..+-..|.+. -+..+.+|++ +++..++- ..-..++-|.+++++.-.+ .+++...=-=|.|++.+.|+.
T Consensus 13 ~ei~elks~l~s~-~~~kr~~a~k---kvIa~Mt~----G~DvSslF~dvvk~~~T~d-lelKKlvyLYl~nYa~~~P~~ 83 (734)
T KOG1061|consen 13 GEIPELKSQLNSQ-SKEKRKDAVK---KVIAYMTV----GKDVSSLFPDVVKCMQTRD-LELKKLVYLYLMNYAKGKPDL 83 (734)
T ss_pred hhchHHHHHhhhh-hhhhHHHHHH---HHHhcCcc----CcchHhhhHHHHhhcccCC-chHHHHHHHHHHHhhccCchH
Confidence 4566777777554 3466666654 44444321 2345678899999998764 888888777888888887755
Q ss_pred hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCC
Q 000286 92 CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP 171 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~ 171 (1720)
+. ++|..++ +=-..+++.++--|+.+++-|--+ .++ .....+|+..++....-+++.|+-+++++-.-
T Consensus 84 a~-----~avnt~~-kD~~d~np~iR~lAlrtm~~l~v~---~i~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~-- 151 (734)
T KOG1061|consen 84 AI-----LAVNTFL-KDCEDPNPLIRALALRTMGCLRVD---KIT-EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI-- 151 (734)
T ss_pred HH-----hhhhhhh-ccCCCCCHHHHHHHhhceeeEeeh---HHH-HHHHHHHHHhccCCChhHHHHHHHHHHHhhcC--
Confidence 43 4677777 555566677887777777655322 222 23567888888989999999999998887652
Q ss_pred CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHH
Q 000286 172 SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTY 251 (1720)
Q Consensus 172 ~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~ 251 (1720)
..+.....+.++.|..++...|+.|+.+|+.+|..|.+. +++..-..+..-++..++..|... ..--+
T Consensus 152 ~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~---~~~~~~~~l~~~~~~~lL~al~ec---------~EW~q 219 (734)
T KOG1061|consen 152 DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES---HPSVNLLELNPQLINKLLEALNEC---------TEWGQ 219 (734)
T ss_pred ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh---CCCCCcccccHHHHHHHHHHHHHh---------hhhhH
Confidence 234445678999999999999999999999999999996 443222222333444555555433 23345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccc--------------------------cccccCCCHH
Q 000286 252 TGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSA--------------------------VPPALSRPAE 305 (1720)
Q Consensus 252 ~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~--------------------------~s~i~~~~~~ 305 (1720)
..++.++.+-...++.-++.+++ .+...|.+........ ...++...++
T Consensus 220 i~IL~~l~~y~p~d~~ea~~i~~-----r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e 294 (734)
T KOG1061|consen 220 IFILDCLAEYVPKDSREAEDICE-----RLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESE 294 (734)
T ss_pred HHHHHHHHhcCCCCchhHHHHHH-----HhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccch
Confidence 55566665555444433333332 3333333322211110 0011222221
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhc--cCHHHHHHHHHHH
Q 000286 306 QIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLS--DQPELLQQFGMDL 383 (1720)
Q Consensus 306 qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~pe~~~~f~~~l 383 (1720)
.-+-+++=|.-++-..++ ++.+. +...| +..-.| -. ....+.+++. .+.+-+++ +
T Consensus 295 ~qyvaLrNi~lil~~~p~-~~~~~-~~~Ff----~kynDP------------iY-vK~eKleil~~la~~~nl~q----v 351 (734)
T KOG1061|consen 295 IQYVALRNINLILQKRPE-ILKVE-IKVFF----CKYNDP------------IY-VKLEKLEILIELANDANLAQ----V 351 (734)
T ss_pred hhHHHHhhHHHHHHhChH-HHHhH-hHeee----eecCCc------------hh-hHHHHHHHHHHHhhHhHHHH----H
Confidence 111112212222222222 11000 00000 000000 00 0011222221 13333333 3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHHhhCchhh
Q 000286 384 LPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTF 462 (1720)
Q Consensus 384 lP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll~K~pd~f 462 (1720)
++=|. .|..-++.+.-+++++||.++---.... +..++.||..+ ..+-..++.-+...++.++.|+|..|
T Consensus 352 l~El~-eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell-~~~~~yvvqE~~vvi~dilRkyP~~~ 421 (734)
T KOG1061|consen 352 LAELK-EYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELL-ETKVDYVVQEAIVVIRDILRKYPNKY 421 (734)
T ss_pred HHHHH-HhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHH-hhcccceeeehhHHHHhhhhcCCCch
Confidence 34333 4888899999999999999865433322 33455555553 34445577788899999999999866
No 75
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.82 E-value=0.25 Score=62.85 Aligned_cols=233 Identities=10% Similarity=0.109 Sum_probs=145.2
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCC-HHHHHHHHHHHHHhhccC-
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESN-PDIMLLAARALTHLCDVL- 88 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~-~eiq~~AaraLtNL~~~~- 88 (1720)
...+..+|..|+++ .+..+...+..+.++...-..--+..-....++..++--++..+. ..+++...-++.|-..+-
T Consensus 715 ~~~v~R~v~~lkde-~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~ 793 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDE-PEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRV 793 (1172)
T ss_pred hHHHHHHhhhhccc-cHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhcc
Confidence 45678889999887 554455555666666554222112222333455555555554332 335555555555554431
Q ss_pred CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc---Ccc--hhhhcCchhHHhhhhccCChHHHHHHHHHH
Q 000286 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE---HPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTA 163 (1720)
Q Consensus 89 p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~---~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aL 163 (1720)
..+... ++..++ ++|.....+++.||+..++.|+.- +.. .+-..|. .|..+|+...+++.-..+-++
T Consensus 794 kpylpq-----i~stiL-~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAi 865 (1172)
T KOG0213|consen 794 KPYLPQ-----ICSTIL-WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAI 865 (1172)
T ss_pred ccchHH-----HHHHHH-HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHH
Confidence 001111 334445 778899999999999999998742 222 2223333 355677777777665544444
Q ss_pred HHhccCCC-CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCC
Q 000286 164 ANMCKKLP-SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGG 242 (1720)
Q Consensus 164 sNlc~~~~-~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~ 242 (1720)
..++.... ...+.-+++++|.|..+|.+...+|++++...+..||+. .++.+..-----++-.|+++|...
T Consensus 866 kaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr---gpE~v~aREWMRIcfeLlelLkah----- 937 (1172)
T KOG0213|consen 866 KAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR---GPEYVSAREWMRICFELLELLKAH----- 937 (1172)
T ss_pred HHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc---CcccCCHHHHHHHHHHHHHHHHHH-----
Confidence 44443221 112233788999999999999999999999999999996 666433222224677788888765
Q ss_pred CCCCChhHHHHHHHHHHHHhcC
Q 000286 243 QASLSTPTYTGLIRLLSTCASG 264 (1720)
Q Consensus 243 ~~~ls~~i~~~alr~L~nLas~ 264 (1720)
+..+...+...++.|+..
T Consensus 938 ----kK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 938 ----KKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred ----HHHHHHHHHhhhhHHHHh
Confidence 578999999999998753
No 76
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=96.77 E-value=0.0034 Score=64.43 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=113.8
Q ss_pred ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhH
Q 000286 99 GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAAD 176 (1720)
Q Consensus 99 GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~ 176 (1720)
+-+..|+.......+++-+||.+.-|.|.+-|..+ .+.+..+|...+.-|...+......++..++|+|-......+.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 45778888888999999999999999999999887 4678889999898888888889999999999999988888888
Q ss_pred HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHh
Q 000286 177 FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATL 233 (1720)
Q Consensus 177 ~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~L 233 (1720)
...+.+|.+...|.+....++-.|+.++..|+.+ .....+.+....++..+.+.
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~---~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFG---ERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCc---ccchhHHhccHHHHHHHHHH
Confidence 8889999999999999999999999999999997 66677777766555554443
No 77
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.045 Score=66.24 Aligned_cols=257 Identities=12% Similarity=0.079 Sum_probs=169.2
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
++-+.+|+...... +++.....+.-|-++--.+... ..++..|++|.|+.+|.++.. .-.|...|+.|.. ..+
T Consensus 344 ~~iveKL~klfp~~-h~dL~~~tl~LlfNlSFD~glr--~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~-dD~ 416 (791)
T KOG1222|consen 344 NGIVEKLLKLFPIQ-HPDLRKATLMLLFNLSFDSGLR--PKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSC-DDD 416 (791)
T ss_pred ccHHHHHHHhcCCC-CHHHHHHHHHHhhhcccccccc--HHHhhccchHHHHHHhCCccc---chhhhhhhhhhcc-CcH
Confidence 45567777777776 7887766665554433333222 458899999999999986531 1134445555554 456
Q ss_pred chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhcc
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1720)
....+....+||.|+..++.....++--..+...-|||.+..+ .|.+..|+..|+..--.+...+ .+..+.|+..
T Consensus 417 ~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~l---LmK~vRniSq 493 (791)
T KOG1222|consen 417 AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLL---LMKVVRNISQ 493 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchH---HHHHHHHhhh
Confidence 6777888899999998888888776666566666788865554 5777778877765432222222 2445667776
Q ss_pred CCCCchhHHHhCcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCC
Q 000286 169 KLPSDAADFVMEAVPLLTNLLQYH-DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLS 247 (1720)
Q Consensus 169 ~~~~~~~~~v~~~lP~L~~LL~~~-D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls 247 (1720)
...+.. ...-+-+-.|..++... +......++..+++|.-- +-+--+.+-+..+||-+-..|..+- --
T Consensus 494 Heg~tq-n~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~---dldw~~ilq~~~LvPw~k~~L~pga-------~e 562 (791)
T KOG1222|consen 494 HEGATQ-NMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVT---DLDWAKILQSENLVPWMKTQLQPGA-------DE 562 (791)
T ss_pred ccchHH-HHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccC---CCCHHHHHhhccccHHHHHhhcCCc-------cc
Confidence 554333 23344566666666554 455666677778877763 4455556667799999999997652 13
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC
Q 000286 248 TPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 248 ~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1720)
...+..++-+++.++.. ...+..+-.+++++.|++||+...
T Consensus 563 ddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~Q 603 (791)
T KOG1222|consen 563 DDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQ 603 (791)
T ss_pred hhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhc
Confidence 45677777777776654 455566667999999999998654
No 78
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.68 E-value=0.0018 Score=57.22 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 000286 71 PDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKI 127 (1720)
Q Consensus 71 ~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nI 127 (1720)
+.++..|+|+|++++...++.....+ ..++|.|+ .+|..++.+|+..|+|||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~-~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALI-PLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHH-HHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHH-HHHcCCCHHHHHHHHHHHhcC
Confidence 46889999999999988887776644 47899999 888888889999999999987
No 79
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.75 Score=58.61 Aligned_cols=337 Identities=17% Similarity=0.127 Sum_probs=194.8
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
...+..+++.+..- -++.|......|..+..+... .....+.+.+.++|... ...-+.-|++.+..+..+..
T Consensus 95 ~~~~~~~~~~~~tp-s~~~q~~~~~~l~~~~~~~~~-----~~~~~~l~~l~~ll~~~-~~~~~~~aa~~~ag~v~g~~- 166 (569)
T KOG1242|consen 95 ISIIEILLEELDTP-SKSVQRAVSTCLPPLVVLSKG-----LSGEYVLELLLELLTST-KIAERAGAAYGLAGLVNGLG- 166 (569)
T ss_pred hHHHHHHHHhcCCC-cHHHHHHHHHHhhhHHHHhhc-----cCHHHHHHHHHHHhccc-cHHHHhhhhHHHHHHHcCcH-
Confidence 34556666666554 789999999999888887543 45566789999999855 47778899999999987763
Q ss_pred chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCc---hhHHhhhhccCChHHHHH---HHHHHH
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGA---LMAVLSYLDFFSTGVQRV---ALSTAA 164 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~Gg---L~~LL~lLd~~~~~vqr~---Al~aLs 164 (1720)
.....+.+.+-.|-.....-.+..-+|-++.+.+..+..-+ .-.+-+. ++.++.-+......+++. |+.++.
T Consensus 167 -i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~ 244 (569)
T KOG1242|consen 167 -IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIM 244 (569)
T ss_pred -HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 44566777888887444444444444444444444443322 1222233 333443333334444444 444444
Q ss_pred HhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCC
Q 000286 165 NMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1720)
Q Consensus 165 Nlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~ 244 (1720)
++.. . ..++.++|.+..-+...-=+-...++..+..+++. .+.++.... ..++|.+.+.|...
T Consensus 245 ~~~~---~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~---ap~qLs~~l-p~iiP~lsevl~DT------- 307 (569)
T KOG1242|consen 245 RCLS---A---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADC---APKQLSLCL-PDLIPVLSEVLWDT------- 307 (569)
T ss_pred HhcC---c---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh---chHHHHHHH-hHhhHHHHHHHccC-------
Confidence 4432 1 23566666666555433324455677777777775 566665544 57999999999887
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHH-HHHHHHcCChHHHHHhhcCCCcccccccc-----cccCCCHHHHHHHHHHhhccC
Q 000286 245 SLSTPTYTGLIRLLSTCASGSPLC-AKTLLHLGISGILKDILSGSGVSANSAVP-----PALSRPAEQIFEIVNLANELL 318 (1720)
Q Consensus 245 ~ls~~i~~~alr~L~nLas~s~~~-t~~Ll~~gil~~L~~LL~~~~~~~~~~~s-----~i~~~~~~qi~~vi~li~~LL 318 (1720)
.+.++..+..+|..+++.-++- ++ -++|.|.+.|..+....--.+. ..++--...-. +-++
T Consensus 308 --~~evr~a~~~~l~~~~svidN~dI~-----~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psL------almv 374 (569)
T KOG1242|consen 308 --KPEVRKAGIETLLKFGSVIDNPDIQ-----KIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSL------ALMV 374 (569)
T ss_pred --CHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhH------HHHH
Confidence 5889999999999988653221 11 1345666666655421100000 00000000001 1112
Q ss_pred CCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHH
Q 000286 319 PPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSP 398 (1720)
Q Consensus 319 P~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~ 398 (1720)
|.|.++ --++... .+ .......+.+..+ ..+|..+..|+-.|+|-|-.+..-. .+.
T Consensus 375 piL~R~--------------l~eRst~----~k----r~t~~IidNm~~L-veDp~~lapfl~~Llp~lk~~~~d~-~PE 430 (569)
T KOG1242|consen 375 PILKRG--------------LAERSTS----IK----RKTAIIIDNMCKL-VEDPKDLAPFLPSLLPGLKENLDDA-VPE 430 (569)
T ss_pred HHHHHH--------------Hhhccch----hh----hhHHHHHHHHHHh-hcCHHHHhhhHHHHhhHHHHHhcCC-Chh
Confidence 222221 1011000 00 0001122233332 5578888899999999999998776 999
Q ss_pred HHHHHHHHHHHHh
Q 000286 399 VRHKCLSVIGKLM 411 (1720)
Q Consensus 399 VR~~~L~~l~r~v 411 (1720)
||.-..+++..++
T Consensus 431 vR~vaarAL~~l~ 443 (569)
T KOG1242|consen 431 VRAVAARALGALL 443 (569)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986554
No 80
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.61 Score=60.58 Aligned_cols=354 Identities=15% Similarity=0.172 Sum_probs=200.1
Q ss_pred cchHHHHHHHhhcC----CCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHH-HHHhhcCCCCHHHHHHHHHHHHHhh
Q 000286 11 SGRLKKILSGLRAD----GEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPV-LVGLLNHESNPDIMLLAARALTHLC 85 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~----~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~-LV~lL~~~~~~eiq~~AaraLtNL~ 85 (1720)
+.+++.++..++.. ++..+...=+..|+..+...+++.. .....+++- .+++|..+. -==|.+| |--++
T Consensus 7 ~srL~dlIr~IraakT~AEEr~vI~kE~a~IRa~ire~~~d~~--~r~rniaKLlYi~MLGypa-hFGqiec---lKLia 80 (866)
T KOG1062|consen 7 SSRLRDLIRAIRAAKTAAEERAVIQKECAAIRASIREPTNDPR--KRHRNIAKLLYIHMLGYPA-HFGQIEC---LKLIA 80 (866)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHHHhCCCc-cchhhHH---HHHhc
Confidence 37899999988521 2445555556777777776444332 112222332 245565442 1122222 22222
Q ss_pred ccCCcchhh---------hc--cccc----HHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhcc
Q 000286 86 DVLPSSCAA---------VV--HYGA----VTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDF 150 (1720)
Q Consensus 86 ~~~p~~~~~---------vV--~~Ga----Vp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~ 150 (1720)
+. +.... +. .+.+ +-.|. +=|.+.+--+.--|+.+|++|+...- --...+-+-.+|.+
T Consensus 81 s~--~f~dKRiGYLaamLlLdE~qdvllLltNslk-nDL~s~nq~vVglAL~alg~i~s~Em----ardlapeVe~Ll~~ 153 (866)
T KOG1062|consen 81 SD--NFLDKRIGYLAAMLLLDERQDLLLLLTNSLK-NDLNSSNQYVVGLALCALGNICSPEM----ARDLAPEVERLLQH 153 (866)
T ss_pred CC--CchHHHHHHHHHHHHhccchHHHHHHHHHHH-hhccCCCeeehHHHHHHhhccCCHHH----hHHhhHHHHHHHhC
Confidence 11 11110 00 0011 11222 33456666777889999999975321 11234566677888
Q ss_pred CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHH
Q 000286 151 FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQA 230 (1720)
Q Consensus 151 ~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~L 230 (1720)
.++.+.++|+-|+..+-++.| ..++-+++....+|...+..|+-.++..+..||.. +++.+...-+ +++.+
T Consensus 154 ~~~~irKKA~Lca~r~irK~P----~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~---~~~~l~~fr~--l~~~l 224 (866)
T KOG1062|consen 154 RDPYIRKKAALCAVRFIRKVP----DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI---SPDALSYFRD--LVPSL 224 (866)
T ss_pred CCHHHHHHHHHHHHHHHHcCc----hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc---CHHHHHHHHH--HHHHH
Confidence 899999999999999998765 34566788889999999999999898889999986 7887777776 67777
Q ss_pred HHhhcCCCCCCC------CCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCH
Q 000286 231 ATLISTSNSGGG------QASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPA 304 (1720)
Q Consensus 231 v~LL~~~~~~~~------~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~ 304 (1720)
|..|..-...+= ...-.+-++..+||+|..+-.++++..+.+-+ .|-++.+......|.. .
T Consensus 225 V~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~G--------n 291 (866)
T KOG1062|consen 225 VKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAG--------N 291 (866)
T ss_pred HHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccch--------h
Confidence 777653210000 12346779999999999999998887775533 5566665544322221 1
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHH
Q 000286 305 EQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLL 384 (1720)
Q Consensus 305 ~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~ll 384 (1720)
.-+++++.-|..+.|.=.=.+..+....+.+. +. +.|-...--..-...+..+|..+++==.-++
T Consensus 292 AILYE~V~TI~~I~~~~~LrvlainiLgkFL~-n~--------------d~NirYvaLn~L~r~V~~d~~avqrHr~tIl 356 (866)
T KOG1062|consen 292 AILYECVRTIMDIRSNSGLRVLAINILGKFLL-NR--------------DNNIRYVALNMLLRVVQQDPTAVQRHRSTIL 356 (866)
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHhc-CC--------------ccceeeeehhhHHhhhcCCcHHHHHHHHHHH
Confidence 23456665454444411000000000001110 00 0000000111223344556665554333333
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHH
Q 000286 385 PVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMI 419 (1720)
Q Consensus 385 P~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L 419 (1720)
-.| .-.|.+|||++|-.+++|+.-.+-..+
T Consensus 357 eCL-----~DpD~SIkrralELs~~lvn~~Nv~~m 386 (866)
T KOG1062|consen 357 ECL-----KDPDVSIKRRALELSYALVNESNVRVM 386 (866)
T ss_pred HHh-----cCCcHHHHHHHHHHHHHHhccccHHHH
Confidence 333 347999999999999999977776543
No 81
>PF05536 Neurochondrin: Neurochondrin
Probab=96.58 E-value=0.12 Score=67.07 Aligned_cols=241 Identities=20% Similarity=0.215 Sum_probs=159.7
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhccCcc------hhhhcCchhHHhhhhcc-------CChHHHHHHHHHHHHhccCCCCc
Q 000286 107 RLLTIEYMDLAEQSLQALKKISQEHPT------ACLRAGALMAVLSYLDF-------FSTGVQRVALSTAANMCKKLPSD 173 (1720)
Q Consensus 107 kLL~~~~~dl~Eqal~aL~nIS~~~~~------~Il~~GgL~~LL~lLd~-------~~~~vqr~Al~aLsNlc~~~~~~ 173 (1720)
+||......=+-.++-.+.++....+. .|.++=|..-+-.+|.. .....+.-|+.+++-+|+.....
T Consensus 12 ~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a 91 (543)
T PF05536_consen 12 SLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELA 91 (543)
T ss_pred HHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhh
Confidence 555555533334444555555443321 35566566666666653 34567778999999999955444
Q ss_pred hhHHHhCcHHHHHHhhccCCH-HHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHH
Q 000286 174 AADFVMEAVPLLTNLLQYHDA-KVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 252 (1720)
Q Consensus 174 ~~~~v~~~lP~L~~LL~~~D~-~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~ 252 (1720)
.-..+.+-||.|+.++.+.+. .++.+|+.||..|+. +++-.+.+++.|.++.|++.+.+. +....
T Consensus 92 ~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias----~~~G~~aLl~~g~v~~L~ei~~~~----------~~~~E 157 (543)
T PF05536_consen 92 SSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS----SPEGAKALLESGAVPALCEIIPNQ----------SFQME 157 (543)
T ss_pred cCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc----CcHhHHHHHhcCCHHHHHHHHHhC----------cchHH
Confidence 445677899999999877766 999999999999995 899999999999999999999774 34677
Q ss_pred HHHHHHHHHhcCCHHHHHH---HHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCC
Q 000286 253 GLIRLLSTCASGSPLCAKT---LLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLP 329 (1720)
Q Consensus 253 ~alr~L~nLas~s~~~t~~---Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~ 329 (1720)
.++.+|.++++......-. -.-..++..|...+... ..+.-.+++.++..+||..+....-
T Consensus 158 ~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~--------------~~~~kfell~~L~~~L~~~~~~~~~-- 221 (543)
T PF05536_consen 158 IALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF--------------HGEDKFELLEFLSAFLPRSPILPLE-- 221 (543)
T ss_pred HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh--------------ccchHHHHHHHHHHhcCcCCccccc--
Confidence 8888888887754421110 00012334444444321 1223355577778888865210000
Q ss_pred ccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 000286 330 SSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGK 409 (1720)
Q Consensus 330 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r 409 (1720)
. ..++ .-...+..-+.++.++-+.+.-|..++.+..-
T Consensus 222 --------------~-------------------------~~~~----~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~ 258 (543)
T PF05536_consen 222 --------------S-------------------------PPSP----KWLSDLRKGLRDILQSRLTPSQRDPALNLAAS 258 (543)
T ss_pred --------------c-------------------------CChh----hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0 0011 22356777788888999999999999999999
Q ss_pred HhhcCCHHHHH
Q 000286 410 LMYFSSAEMIQ 420 (1720)
Q Consensus 410 ~v~~~~~~~L~ 420 (1720)
|+...-++++-
T Consensus 259 Ll~~~G~~wl~ 269 (543)
T PF05536_consen 259 LLDLLGPEWLF 269 (543)
T ss_pred HHHHhChHhhc
Confidence 99886666644
No 82
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.55 E-value=0.0025 Score=56.34 Aligned_cols=54 Identities=26% Similarity=0.301 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHH
Q 000286 154 GVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRI 207 (1720)
Q Consensus 154 ~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L 207 (1720)
.+++.|+|+|.+++...+........+++|.|..+|++++..|...|||||++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578899999999888776666678889999999999999999999999999876
No 83
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.50 E-value=0.0032 Score=51.67 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=34.2
Q ss_pred cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
+.+..+++.|+||.|+ +|+...+.+++++|+|+|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~-~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALV-ELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHH-HHHcCCCHHHHHHHHHHHHHHcC
Confidence 4566788999999999 88888899999999999999973
No 84
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.49 E-value=0.15 Score=63.14 Aligned_cols=373 Identities=13% Similarity=0.098 Sum_probs=201.9
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhcCCCcc--ccccc-------------ccCcHHHHHHhhcC------CCCHHHHHHHH
Q 000286 20 GLRADGEEGKQVEALTQLCEMLSIGTEES--LSTFS-------------VDSFAPVLVGLLNH------ESNPDIMLLAA 78 (1720)
Q Consensus 20 ~L~s~~D~~~ql~Al~~L~~lL~~~~~~~--l~~~~-------------~~g~Vp~LV~lL~~------~~~~eiq~~Aa 78 (1720)
..++. +.++..+|+.--+-+...+.+-. +..+| ...++|.|+++|.. +++..+-..|.
T Consensus 271 ~mks~-nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~ 349 (858)
T COG5215 271 FMKSQ-NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS 349 (858)
T ss_pred HhcCc-chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence 34566 66788888776655544332211 12344 44489999999974 23456777888
Q ss_pred HHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch---hhhcCchhHHhhhhccCChHH
Q 000286 79 RALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA---CLRAGALMAVLSYLDFFSTGV 155 (1720)
Q Consensus 79 raLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~---Il~~GgL~~LL~lLd~~~~~v 155 (1720)
-||--++... ...+++. |=.+++.=+..++-.-+|.++.|++.+-...... -+-..+++.++........-+
T Consensus 350 sCLqlfaq~~---gd~i~~p--Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~v 424 (858)
T COG5215 350 SCLQLFAQLK---GDKIMRP--VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWV 424 (858)
T ss_pred HHHHHHHHHh---hhHhHHH--HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeeh
Confidence 8888777532 2234442 5556667777788888899999999997654442 223457788888877777888
Q ss_pred HHHHHHHHHHhccCCCCc--hhHHHhCcHHHHHHhh-c-cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC---CcHH
Q 000286 156 QRVALSTAANMCKKLPSD--AADFVMEAVPLLTNLL-Q-YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH---GLVT 228 (1720)
Q Consensus 156 qr~Al~aLsNlc~~~~~~--~~~~v~~~lP~L~~LL-~-~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~---gll~ 228 (1720)
...++||+..++...+.. ...++ .+.....| . .+.+++..++||.+.++++.+.........++.. .++.
T Consensus 425 k~ttAwc~g~iad~va~~i~p~~Hl---~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~ 501 (858)
T COG5215 425 KSTTAWCFGAIADHVAMIISPCGHL---VLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILN 501 (858)
T ss_pred hhHHHHHHHHHHHHHHHhcCccccc---cHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHH
Confidence 899999999998744211 11111 12222222 1 2458999999999999999653222111222211 1222
Q ss_pred HHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCccccccc-ccccCCC-HHH
Q 000286 229 QAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAV-PPALSRP-AEQ 306 (1720)
Q Consensus 229 ~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~-s~i~~~~-~~q 306 (1720)
.|+.--... .-..+.+..+..+|+.+..-+++....++ .|+......=|.. ++.+ +++..-. ...
T Consensus 502 ~Lv~~t~~~-------~Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl~~-----~isv~~q~l~~eD~~~ 568 (858)
T COG5215 502 ALVKGTELA-------LNESNLRVSLFSALGTLILICPDAVSDIL-AGFYDYTSKKLDE-----CISVLGQILATEDQLL 568 (858)
T ss_pred HHHHHHHhh-------ccchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHH-----HHHHhhhhhhhHHHHH
Confidence 222211111 01345677788888888777665433222 3333333332221 1111 1111111 111
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHH
Q 000286 307 IFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPV 386 (1720)
Q Consensus 307 i~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~ 386 (1720)
++++..=+.++|..++... + + + +...-..|+-+
T Consensus 569 ~~elqSN~~~vl~aiir~~-------------------~-----~--------------------~---ie~v~D~lm~L 601 (858)
T COG5215 569 VEELQSNYIGVLEAIIRTR-------------------R-----R--------------------D---IEDVEDQLMEL 601 (858)
T ss_pred HHHHHHHHHHHHHHHHHhc-------------------C-----C--------------------C---cccHHHHHHHH
Confidence 2222221222222222100 0 0 0 00001245666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHHhhCchhhhh
Q 000286 387 LIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSK 464 (1720)
Q Consensus 387 L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll~K~pd~f~~ 464 (1720)
|+.+..++-..-+--.++.+|-.|........-+-+ ..+.-|+..-|+..|..+...|.-++--|-.-+...|.+
T Consensus 602 f~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~---~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~ 676 (858)
T COG5215 602 FIRILESTKPTTAFGDVYTAISALSTSLEERFEQYA---SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNI 676 (858)
T ss_pred HHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 777777775555677788888777643222111101 245566667777788777777777766666555554443
No 85
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.43 E-value=0.082 Score=70.47 Aligned_cols=228 Identities=16% Similarity=0.201 Sum_probs=139.9
Q ss_pred cCcHHHHHHhhcCCC----CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHh---cCCc----HHHHHHHHHH
Q 000286 55 DSFAPVLVGLLNHES----NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLL---TIEY----MDLAEQSLQA 123 (1720)
Q Consensus 55 ~g~Vp~LV~lL~~~~----~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL---~~~~----~dl~Eqal~a 123 (1720)
.|.+..|+.+|..-. ..++--.....|.+.+. .+.+++.+++.|+|+.|+..|. .... .+++|+.+..
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 355666666665321 23333345555555555 4788899999999999997664 4444 7999999999
Q ss_pred HHHhhccCcch-------hhhcC-----c---hhHHhhhhcc----CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHH
Q 000286 124 LKKISQEHPTA-------CLRAG-----A---LMAVLSYLDF----FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPL 184 (1720)
Q Consensus 124 L~nIS~~~~~~-------Il~~G-----g---L~~LL~lLd~----~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~ 184 (1720)
++-|..+.... ..... . +..+++.+.. .+..+....+.+|-+++.+.+......+.-+-|.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p~ 274 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKPY 274 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHHh
Confidence 99997653321 11222 2 5666666653 2567788889999999987665554444444444
Q ss_pred HHHhhcc--CCHHHHHHHHHHHHHHHhhcCCCH---HHHHHHHhCCcHHHHHHhhcCCCCCCC---C----CCCChhHHH
Q 000286 185 LTNLLQY--HDAKVLEHASVCLTRIAEAFASSP---DKLDELCNHGLVTQAATLISTSNSGGG---Q----ASLSTPTYT 252 (1720)
Q Consensus 185 L~~LL~~--~D~~V~e~A~~aLs~L~~~~~~~~---~~~~~li~~gll~~Lv~LL~~~~~~~~---~----~~ls~~i~~ 252 (1720)
| ++=.. .+..=-.-.+.||+.|+.+..++. ...+.+++.|++...++.|...-+... + ..++.....
T Consensus 275 l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp 353 (802)
T PF13764_consen 275 L-DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLP 353 (802)
T ss_pred c-ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHH
Confidence 4 23111 111111234788888888865443 567888899999999998865421100 0 013334455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhh
Q 000286 253 GLIRLLSTCASGSPLCAKTLLHLGISGILKDIL 285 (1720)
Q Consensus 253 ~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL 285 (1720)
-+|++|.-+|.+... +|.++..++++.|..|=
T Consensus 354 ~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LE 385 (802)
T PF13764_consen 354 YILRLLRGLARGHEP-TQLLIAEQLLPLLHRLE 385 (802)
T ss_pred HHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhh
Confidence 677788888877554 45556666665555543
No 86
>PF05536 Neurochondrin: Neurochondrin
Probab=96.39 E-value=0.074 Score=68.99 Aligned_cols=196 Identities=20% Similarity=0.238 Sum_probs=130.1
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccc--ccccccCcHHHHHHhhcCCC-----CH-HHHHHHHHHH
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESL--STFSVDSFAPVLVGLLNHES-----NP-DIMLLAARAL 81 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l--~~~~~~g~Vp~LV~lL~~~~-----~~-eiq~~AaraL 81 (1720)
++..+++.+..|++. +-+.++.||--+.+++...+.... +.+-..=..+-|-++|+... ++ ..+-.|.-+|
T Consensus 3 ~~~~l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 3 QSASLEKCLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred chHHHHHHHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 456789999999988 568889999999888886553221 11222222355555565421 23 3445777777
Q ss_pred HHhhccCCcchh--hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc--chhhhcCchhHHhhhhccCChHHHH
Q 000286 82 THLCDVLPSSCA--AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP--TACLRAGALMAVLSYLDFFSTGVQR 157 (1720)
Q Consensus 82 tNL~~~~p~~~~--~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~--~~Il~~GgL~~LL~lLd~~~~~vqr 157 (1720)
..++. .|+... .++ +-||.|++-+.......+.+.|+.+|..|+.... ..+++.|+++.+...+.. ....+.
T Consensus 82 ~~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E 157 (543)
T PF05536_consen 82 AAFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQME 157 (543)
T ss_pred HHHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHH
Confidence 77776 454443 344 5899999555555555999999999999995443 379999999999999887 666778
Q ss_pred HHHHHHHHhccCCCC----chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 158 VALSTAANMCKKLPS----DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 158 ~Al~aLsNlc~~~~~----~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
.|+.++.+++..... .....+..+++.|............-.+|..|..+-..
T Consensus 158 ~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 158 IALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 899999998885442 22233345566666665544444444556666665553
No 87
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.14 E-value=0.011 Score=48.88 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=37.5
Q ss_pred CHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000286 214 SPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1720)
Q Consensus 214 ~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas 263 (1720)
++++.+.++++|+++.|++||.+. +..++..++++|+|||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~---------~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP---------DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS---------SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC---------CHHHHHHHHHHHHHHhC
Confidence 468899999999999999999976 68999999999999984
No 88
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.07 E-value=0.072 Score=64.20 Aligned_cols=177 Identities=17% Similarity=0.145 Sum_probs=121.4
Q ss_pred cchHHHHHHHhhcCCCH--HHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC
Q 000286 11 SGRLKKILSGLRADGEE--GKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL 88 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~--~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~ 88 (1720)
.+.+..|+..+++. +. .++++|.+-|-++++..|-+.+ ...| +..++.+-+....++++...+..|.||...+
T Consensus 179 ~~~lD~Llrmf~aP-n~et~vRve~~rlLEq~~~aeN~d~v---a~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAP-NLETSVRVEAARLLEQILVAENRDRV---ARIG-LGVILNLAKEREPVELARSVAGILEHMFKHS 253 (832)
T ss_pred cchHHHHHHHHhCC-chhHHHHHHHHHHHHHHHhhhhhhHH---hhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence 44677778888775 33 5599999999888887765543 3333 4444444444446899999999999999999
Q ss_pred CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc----hhhhcCchhHHhhhhccCChHHHH-HHHHHH
Q 000286 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDFFSTGVQR-VALSTA 163 (1720)
Q Consensus 89 p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~~~~~vqr-~Al~aL 163 (1720)
.+.+..+|..|++..++ ---.-.++++...|.-||+|++-.... -+++..+ +--|-.|.|...++.| .|+-++
T Consensus 254 eet~~~Lvaa~~lD~vl-~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~-~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 254 EETCQRLVAAGGLDAVL-YWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRA-AEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred HHHHHHHHhhcccchhe-eecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhh-hhhhhhhhcchHHHHHHHHHHHH
Confidence 99999999999999887 444556799999999999999876553 3444433 3334445555555555 588888
Q ss_pred HHhccCCCCchhHHHhCcHHHHHHhhccCCH
Q 000286 164 ANMCKKLPSDAADFVMEAVPLLTNLLQYHDA 194 (1720)
Q Consensus 164 sNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~ 194 (1720)
+-++.+.+........+-+...-.++.+-|+
T Consensus 332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~DP 362 (832)
T KOG3678|consen 332 AVLATNKEVEREVRKSGTLALVEPLVASLDP 362 (832)
T ss_pred hhhhhhhhhhHHHhhccchhhhhhhhhccCc
Confidence 8888776655544444544444444444443
No 89
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.01 E-value=0.4 Score=62.83 Aligned_cols=245 Identities=15% Similarity=0.195 Sum_probs=152.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC-------
Q 000286 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL------- 88 (1720)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~------- 88 (1720)
.|++...+. |.+.++.|+..|-.-|.... -.++.=....++..|+++|.+. |.|+|..|.+||+-|..--
T Consensus 9 ~Llekmtss-DKDfRfMAtsDLm~eLqkds-i~Ld~dSe~kvv~~lLklL~D~-ngEVQnlAVKClg~lvsKvke~~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSS-DKDFRFMATSDLMTELQKDS-IKLDDDSERKVVKMLLKLLEDK-NGEVQNLAVKCLGPLVSKVKEDQLET 85 (1233)
T ss_pred HHHHHccCC-CcchhhhhHHHHHHHHHhhh-hhccccchhHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHhhchHHHHHH
Confidence 688888777 99999999999977776542 1222223345799999999876 7999999999999443211
Q ss_pred -------------------------------CcchhhhcccccHHHHHHHH-----------------------------
Q 000286 89 -------------------------------PSSCAAVVHYGAVTCFVARL----------------------------- 108 (1720)
Q Consensus 89 -------------------------------p~~~~~vV~~GaVp~Lv~kL----------------------------- 108 (1720)
|.+.....-..+++.+..+|
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 10111111111111111111
Q ss_pred -----------------hcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhcc-CChHHHHHHHHHHHHhccCC
Q 000286 109 -----------------LTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDF-FSTGVQRVALSTAANMCKKL 170 (1720)
Q Consensus 109 -----------------L~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNlc~~~ 170 (1720)
+.++-.-++..|+.+|+.++...+..... +.+..|+.-|.. ......|..+.+++.+|+..
T Consensus 166 ~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~-~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 166 TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYV-ELIEHLLKGLSNRTQMSATRTYIQCLAAICRQA 244 (1233)
T ss_pred ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHhccCCCCchHHHHHHHHHHHHHHHHh
Confidence 12223456666777777776655543221 233334444432 35677888899999999965
Q ss_pred CCchhHHHhCcHHHHHHhh---ccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCC-C-C----
Q 000286 171 PSDAADFVMEAVPLLTNLL---QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNS-G-G---- 241 (1720)
Q Consensus 171 ~~~~~~~v~~~lP~L~~LL---~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~-~-~---- 241 (1720)
...--.+...++|.+.+.. +..|.++.+.++.++-..... .|..+-..+. .++..+++.+.+..+ . +
T Consensus 245 g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r---cp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eD 320 (1233)
T KOG1824|consen 245 GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR---CPKEILPHVP-EIINLCLSYISYDPNYNYDTEED 320 (1233)
T ss_pred cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh---Chhhhcccch-HHHHHHHHHhccCCCCCCCCccc
Confidence 5444455677899999988 778899999999999888875 5554444332 356666666654210 0 0
Q ss_pred -------------------CCCCCChhHHHHHHHHHHHHhcCCHHH
Q 000286 242 -------------------GQASLSTPTYTGLIRLLSTCASGSPLC 268 (1720)
Q Consensus 242 -------------------~~~~ls~~i~~~alr~L~nLas~s~~~ 268 (1720)
..-.++-.++..+++||..+.....+.
T Consensus 321 ed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~ 366 (1233)
T KOG1824|consen 321 EDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEM 366 (1233)
T ss_pred hhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHH
Confidence 012356678999999998877665554
No 90
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.98 E-value=0.6 Score=61.27 Aligned_cols=220 Identities=15% Similarity=0.082 Sum_probs=142.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhh
Q 000286 58 APVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLR 137 (1720)
Q Consensus 58 Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~ 137 (1720)
+..+...|...+.|.+-..|.|++...++..+-.....- -..-..++.+......-++-.|+.++..-+..+.-.=+.
T Consensus 451 ~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~ 528 (1005)
T KOG2274|consen 451 TIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQ 528 (1005)
T ss_pred HHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccc
Confidence 334444455555688888888888877765432222111 011222323444455666667777777776444434556
Q ss_pred cCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHh-h-ccCCHHHHHHHHHHHHHHHhhcCCCH
Q 000286 138 AGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL-L-QYHDAKVLEHASVCLTRIAEAFASSP 215 (1720)
Q Consensus 138 ~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~L-L-~~~D~~V~e~A~~aLs~L~~~~~~~~ 215 (1720)
-+.|..++++...++..+.--.+-+++-.|+-.+......-..+.|.+..+ + .++|+.|...+--++-.|+... .+-
T Consensus 529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~ 607 (1005)
T KOG2274|consen 529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANY 607 (1005)
T ss_pred hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-Hhh
Confidence 788889999999999999999999999999977777766777889988888 4 4568888887777777776631 111
Q ss_pred HHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC
Q 000286 216 DKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 216 ~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1720)
...++. ++|.|++.|.....+ .....+..++.+|..+.++.+.=.-..+-+-+.|.+.++.-++.
T Consensus 608 g~m~e~----~iPslisil~~~~~~-----~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsd 672 (1005)
T KOG2274|consen 608 GPMQER----LIPSLISVLQLNADK-----APAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSD 672 (1005)
T ss_pred cchHHH----HHHHHHHHHcCcccc-----cCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecC
Confidence 122222 589999999765311 23556777888888887765433444444555666666665544
No 91
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.96 E-value=0.15 Score=68.22 Aligned_cols=276 Identities=17% Similarity=0.156 Sum_probs=164.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCC-cccc-cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc----
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTE-ESLS-TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDV---- 87 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~-~~l~-~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~---- 87 (1720)
++.+|..+... +..+|..|+..|+++|.+-.. ++.. .+-++=+.|.|-.++.+..+.-+...=|.||.-+|.-
T Consensus 464 lPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF 542 (1431)
T KOG1240|consen 464 LPYFVHLLMDS-EADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF 542 (1431)
T ss_pred HHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH
Confidence 44455555554 889999999999999998654 2232 3445558899999998644444455556666665521
Q ss_pred --------------CCcc-----------hhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchh
Q 000286 88 --------------LPSS-----------CAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALM 142 (1720)
Q Consensus 88 --------------~p~~-----------~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~ 142 (1720)
.|+. .+.++ ..|..++..|+.-+..-|+..-+..|.-+|.=.++.--..=.|+
T Consensus 543 le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~--~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLs 620 (1431)
T KOG1240|consen 543 LELTQELRQAGMLNDPNSETAPEQNYNTELQALH--HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILS 620 (1431)
T ss_pred HHHHHHHHhcccccCcccccccccccchHHHHHH--HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHH
Confidence 1111 11111 14666666777777777777666666666643222111112367
Q ss_pred HHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000286 143 AVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1720)
Q Consensus 143 ~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li 222 (1720)
.|+.||+..+-...-.-.-.|.-+|....... .-+..+|.|..-|....+.|+..|+.||.-|++. ..++...
T Consensus 621 hLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs--~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-----~ll~K~~ 693 (1431)
T KOG1240|consen 621 HLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS--VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL-----GLLRKPA 693 (1431)
T ss_pred HHHHHhcCccHHHHHHHHhhccceEEEEeeee--HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh-----cccchHH
Confidence 78888887644443333444555554332221 1345788888889999999999999999999984 2333333
Q ss_pred hCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCC
Q 000286 223 NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSR 302 (1720)
Q Consensus 223 ~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~ 302 (1720)
=.++++.+.-+|.++ +.=++..++.+|..++.. ....=+.|-+.|.|...|. +
T Consensus 694 v~~i~~~v~PlL~hP---------N~WIR~~~~~iI~~~~~~---ls~advyc~l~P~irpfl~---------------~ 746 (1431)
T KOG1240|consen 694 VKDILQDVLPLLCHP---------NLWIRRAVLGIIAAIARQ---LSAADVYCKLMPLIRPFLE---------------R 746 (1431)
T ss_pred HHHHHHhhhhheeCc---------hHHHHHHHHHHHHHHHhh---hhhhhheEEeehhhHHhhh---------------c
Confidence 334667777778776 455777777777665532 1122223555566555554 2
Q ss_pred CHHHHHHHHHHhhccCCCCCCCCC
Q 000286 303 PAEQIFEIVNLANELLPPLPQGTI 326 (1720)
Q Consensus 303 ~~~qi~~vi~li~~LLP~L~~~~~ 326 (1720)
+..||..---|+.-|.||+++.++
T Consensus 747 ~v~~i~s~~~LlsclkpPVsRsv~ 770 (1431)
T KOG1240|consen 747 PVIQIESKEVLLSCLKPPVSRSVF 770 (1431)
T ss_pred cHhhhcchHHHHHHhcCCCcHHHH
Confidence 333443333344667788777544
No 92
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.11 Score=64.13 Aligned_cols=200 Identities=9% Similarity=-0.001 Sum_probs=143.8
Q ss_pred HHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhccCChH
Q 000286 78 ARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTG 154 (1720)
Q Consensus 78 araLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~ 154 (1720)
|-||..+...-.--+..+.++.++..|+ ++|+-+.+.+.--++-++.|.--...+ ..++.|.|..++.++...+..
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi-~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLI-DALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHH-HHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 3344444433222334567888899999 888888877777777777777655443 588999999999999988889
Q ss_pred HHHHHHHHHHHhccCC-CCchhHHH-hCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC----cHH
Q 000286 155 VQRVALSTAANMCKKL-PSDAADFV-MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG----LVT 228 (1720)
Q Consensus 155 vqr~Al~aLsNlc~~~-~~~~~~~v-~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~g----ll~ 228 (1720)
.|.+.+|.+..+.-+. ....|..+ +-.+..++.+.+.++-+|+.+++..|.|++..-..+.+-.+.++... +.+
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 9999999999887754 33344444 45788899999999999999999999999874222222333333332 556
Q ss_pred HHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHhhcC
Q 000286 229 QAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLH-LGISGILKDILSG 287 (1720)
Q Consensus 229 ~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~-~gil~~L~~LL~~ 287 (1720)
.|++-+... ++-...+-+-+|.++|+.+++.-+.+++ ..++..+..+|..
T Consensus 569 ~l~~k~e~~---------np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e 619 (743)
T COG5369 569 RLIDKYEEN---------NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDE 619 (743)
T ss_pred HHHHHHHhc---------CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHH
Confidence 677777654 2334455688899999999888888888 5678888777753
No 93
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=2.8 Score=54.85 Aligned_cols=220 Identities=18% Similarity=0.209 Sum_probs=124.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhc
Q 000286 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVV 96 (1720)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV 96 (1720)
|.+.|++. +..++--||..|+++.+-+- ...+.|.+.++|++. ++-+..-|+-|+..+..-.|+....++
T Consensus 112 lknDL~s~-nq~vVglAL~alg~i~s~Em--------ardlapeVe~Ll~~~-~~~irKKA~Lca~r~irK~P~l~e~f~ 181 (866)
T KOG1062|consen 112 LKNDLNSS-NQYVVGLALCALGNICSPEM--------ARDLAPEVERLLQHR-DPYIRKKAALCAVRFIRKVPDLVEHFV 181 (866)
T ss_pred HHhhccCC-CeeehHHHHHHhhccCCHHH--------hHHhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCchHHHHhh
Confidence 34456665 77788888888877666432 235678888888875 588888888888888877777666554
Q ss_pred cc----------cc----HHHHHHHHhcCC------cHHHHHHHHHHHHHhhcc--Ccc--------hhhhcCchhHHhh
Q 000286 97 HY----------GA----VTCFVARLLTIE------YMDLAEQSLQALKKISQE--HPT--------ACLRAGALMAVLS 146 (1720)
Q Consensus 97 ~~----------Ga----Vp~Lv~kLL~~~------~~dl~Eqal~aL~nIS~~--~~~--------~Il~~GgL~~LL~ 146 (1720)
.. |+ +-.+. .|..+. +.++.++-+..|.+|... .+. -.++.- +-.+|.
T Consensus 182 ~~~~~lL~ek~hGVL~~~l~l~~-e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~-iLrlLr 259 (866)
T KOG1062|consen 182 IAFRKLLCEKHHGVLIAGLHLIT-ELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR-ILRLLR 259 (866)
T ss_pred HHHHHHHhhcCCceeeeHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-HHHHHH
Confidence 32 22 22222 444442 357788888888888643 111 122221 112333
Q ss_pred hhccCChHHHHHHHHHHHHhccCCCCch-------h-------------HHHhCcHHHHHHhhccCCHHHHHHHHHHHHH
Q 000286 147 YLDFFSTGVQRVALSTAANMCKKLPSDA-------A-------------DFVMEAVPLLTNLLQYHDAKVLEHASVCLTR 206 (1720)
Q Consensus 147 lLd~~~~~vqr~Al~aLsNlc~~~~~~~-------~-------------~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~ 206 (1720)
+|-..+...-..-.-+|+.+|++.+... + ....-++.+|.+.|.+.|..+.--|+..|.+
T Consensus 260 iLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r 339 (866)
T KOG1062|consen 260 ILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLR 339 (866)
T ss_pred HhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHh
Confidence 3433344444444444444554322111 1 1112245666666666666666666666666
Q ss_pred HHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCC
Q 000286 207 IAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS 265 (1720)
Q Consensus 207 L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s 265 (1720)
++.. ++...|.-- ..+++.|.+. +..++..++..+..|...+
T Consensus 340 ~V~~---d~~avqrHr-----~tIleCL~Dp---------D~SIkrralELs~~lvn~~ 381 (866)
T KOG1062|consen 340 VVQQ---DPTAVQRHR-----STILECLKDP---------DVSIKRRALELSYALVNES 381 (866)
T ss_pred hhcC---CcHHHHHHH-----HHHHHHhcCC---------cHHHHHHHHHHHHHHhccc
Confidence 6664 443333322 2356666665 4667777877777776554
No 94
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=95.78 E-value=0.12 Score=65.68 Aligned_cols=158 Identities=16% Similarity=0.111 Sum_probs=100.6
Q ss_pred ccccccCcHHHHHHhh---------cCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCC----cHHH
Q 000286 50 STFSVDSFAPVLVGLL---------NHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIE----YMDL 116 (1720)
Q Consensus 50 ~~~~~~g~Vp~LV~lL---------~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~----~~dl 116 (1720)
..+.....+..|.++= ....++++..+|.+||+|++-.++..++.+++.|..+.+|++|-... ..|+
T Consensus 16 ~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~ 95 (446)
T PF10165_consen 16 DPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDV 95 (446)
T ss_pred hhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhH
Confidence 3444555566666555 33346899999999999999999999999999999999996665541 5677
Q ss_pred HHHHHHHHHHhhccCcc----hhhhcCchhHHhhhhcc-----------------CChHHHHHHHHHHHHhccCCCCc--
Q 000286 117 AEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDF-----------------FSTGVQRVALSTAANMCKKLPSD-- 173 (1720)
Q Consensus 117 ~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~-----------------~~~~vqr~Al~aLsNlc~~~~~~-- 173 (1720)
.--....|--++...+. .+-+.+++..++..|.. ....+...++.++.|+....+..
T Consensus 96 ~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~ 175 (446)
T PF10165_consen 96 EFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP 175 (446)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc
Confidence 76677777666655443 34455788877776631 02234556788888887644322
Q ss_pred --hhHHHhCcHHHHHHhh---ccC--CHHHHHHHHHHHHHH
Q 000286 174 --AADFVMEAVPLLTNLL---QYH--DAKVLEHASVCLTRI 207 (1720)
Q Consensus 174 --~~~~v~~~lP~L~~LL---~~~--D~~V~e~A~~aLs~L 207 (1720)
....+..++++|..+| ... -......+..+|.++
T Consensus 176 ~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 176 EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 2233444555555552 111 134555666666655
No 95
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.70 E-value=0.062 Score=61.89 Aligned_cols=193 Identities=17% Similarity=0.112 Sum_probs=120.9
Q ss_pred cCCCCHHHHHHHHHHHHHhhccC--Ccchhhhccc--ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch--hhhcC
Q 000286 66 NHESNPDIMLLAARALTHLCDVL--PSSCAAVVHY--GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA--CLRAG 139 (1720)
Q Consensus 66 ~~~~~~eiq~~AaraLtNL~~~~--p~~~~~vV~~--GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~--Il~~G 139 (1720)
..+.+.+.+.+|..-|..++.+. ......++.. ..++.++ +.+.....-|...|+.+|..|+..-... -.-..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~-~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAII-KQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHH-H-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 34557889999999999988876 2233333221 3445666 6666666788899999999998765543 22345
Q ss_pred chhHHhhhhccCChHHHHHHHHHHHHhccCCC-CchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHH
Q 000286 140 ALMAVLSYLDFFSTGVQRVALSTAANMCKKLP-SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKL 218 (1720)
Q Consensus 140 gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~-~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~ 218 (1720)
.++.|+..+.....-+...|..++..+|...+ .... .++.+...+.+..+.+...++.++..+...+..+...+
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 67888888888777888889999999998765 2221 27788888999999999999999999998743112222
Q ss_pred HHHH-hCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHH
Q 000286 219 DELC-NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLL 273 (1720)
Q Consensus 219 ~~li-~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll 273 (1720)
+.-. -..+++.+..+|... ++.++..+-.++..+...-++.+..++
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~---------~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDA---------DPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS----------HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred cccchHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 2211 124678888888877 688999999999999877777776665
No 96
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.62 E-value=0.65 Score=58.25 Aligned_cols=13 Identities=0% Similarity=-0.171 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHh
Q 000286 399 VRHKCLSVIGKLM 411 (1720)
Q Consensus 399 VR~~~L~~l~r~v 411 (1720)
+|+.+-.++-+|.
T Consensus 283 ~aR~A~eA~~~It 295 (410)
T TIGR02270 283 WARLAGEAFSLIT 295 (410)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777766654
No 97
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.62 E-value=0.28 Score=59.93 Aligned_cols=187 Identities=26% Similarity=0.267 Sum_probs=136.0
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
.++.+++.|.+. ++.+++.|...+++ +.....+|.|..+|.++ ++.++..|+.+|..+-.
T Consensus 44 ~~~~~~~~l~~~-~~~vr~~aa~~l~~------------~~~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~~------ 103 (335)
T COG1413 44 AADELLKLLEDE-DLLVRLSAAVALGE------------LGSEEAVPLLRELLSDE-DPRVRDAAADALGELGD------ 103 (335)
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHhh------------hchHHHHHHHHHHhcCC-CHHHHHHHHHHHHccCC------
Confidence 566777777776 88888888887532 33445799999999977 48999999998887742
Q ss_pred hhhcccccHHHHHHHHhc-CCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCCh------------HHHHHH
Q 000286 93 AAVVHYGAVTCFVARLLT-IEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFST------------GVQRVA 159 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~-~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~------------~vqr~A 159 (1720)
.-++|.|+ +++. ..+..++..|.++|+.+-... ++..++..++.... .++..+
T Consensus 104 -----~~a~~~li-~~l~~d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 104 -----PEAVPPLV-ELLENDENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----hhHHHHHH-HHHHcCCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 23788999 6666 689999999999999986533 25556666654331 234444
Q ss_pred HHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCC
Q 000286 160 LSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNS 239 (1720)
Q Consensus 160 l~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~ 239 (1720)
+..+.++- ....++.|...+...+..|...|..++..+... . ..+...+...+...
T Consensus 170 ~~~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~---~---------~~~~~~l~~~~~~~-- 225 (335)
T COG1413 170 AEALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSE---N---------VEAADLLVKALSDE-- 225 (335)
T ss_pred HHHHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc---h---------hhHHHHHHHHhcCC--
Confidence 44444432 345788999999999999999999999999884 2 44667788888776
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhcC
Q 000286 240 GGGQASLSTPTYTGLIRLLSTCASG 264 (1720)
Q Consensus 240 ~~~~~~ls~~i~~~alr~L~nLas~ 264 (1720)
+..+...++..|+.+-..
T Consensus 226 -------~~~vr~~~~~~l~~~~~~ 243 (335)
T COG1413 226 -------SLEVRKAALLALGEIGDE 243 (335)
T ss_pred -------CHHHHHHHHHHhcccCcc
Confidence 567888888888876543
No 98
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=1 Score=59.82 Aligned_cols=335 Identities=14% Similarity=0.144 Sum_probs=179.1
Q ss_pred cCcHHHHHHhhc------CCC-CHHHHHHHHHHHHHhhccCCcchh--hhcccccHHHHHHHHhcCCcHHHHHHHHHHHH
Q 000286 55 DSFAPVLVGLLN------HES-NPDIMLLAARALTHLCDVLPSSCA--AVVHYGAVTCFVARLLTIEYMDLAEQSLQALK 125 (1720)
Q Consensus 55 ~g~Vp~LV~lL~------~~~-~~eiq~~AaraLtNL~~~~p~~~~--~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~ 125 (1720)
.++++-++++|. .+. ++--..=|.+++++|++....... ..++.=.++.+. -.+.+++--++-+|+|+|.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf-P~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF-PEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh-HhhcCchhHHHHHHHHHHH
Confidence 356888888887 222 344445778888888864322211 222222333333 4456888999999999999
Q ss_pred Hhh-ccCcchhhhcCchhHHhhhhc-cCChHHHHHHHHHHHHhccCCCCch---hHHHhCcHHHHHHhhccCCHHHHHHH
Q 000286 126 KIS-QEHPTACLRAGALMAVLSYLD-FFSTGVQRVALSTAANMCKKLPSDA---ADFVMEAVPLLTNLLQYHDAKVLEHA 200 (1720)
Q Consensus 126 nIS-~~~~~~Il~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNlc~~~~~~~---~~~v~~~lP~L~~LL~~~D~~V~e~A 200 (1720)
.+| -+-.+..+-..++....+.|. .....++-.|+-++.-+..+.+..+ ..++.+.+..|..+.+..+.+.+..+
T Consensus 488 ~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred HHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 999 566655555556777777666 6777888888888887777654332 23455556666666665555555544
Q ss_pred HHHHHHHHhhcCCCHHHHHHHH---hCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHH---hcC---CHHHHHH
Q 000286 201 SVCLTRIAEAFASSPDKLDELC---NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTC---ASG---SPLCAKT 271 (1720)
Q Consensus 201 ~~aLs~L~~~~~~~~~~~~~li---~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nL---as~---s~~~t~~ 271 (1720)
.. .|+..| .+.+..+. -..+.....+++...+. ....+..-...|+.+|..| ... .++..+.
T Consensus 568 me---~iV~~f---seElsPfA~eL~q~La~~F~k~l~~~~~---~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~ 638 (1010)
T KOG1991|consen 568 ME---KIVCKF---SEELSPFAVELCQNLAETFLKVLQTSED---EDESDDDKAIAASGILRTISTILLSLENHPEVLKQ 638 (1010)
T ss_pred HH---HHHHHH---HHhhchhHHHHHHHHHHHHHHHHhccCC---CCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 43 334432 11222211 11234445555543110 0011222222333333222 211 1111111
Q ss_pred HHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCC
Q 000286 272 LLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGK 351 (1720)
Q Consensus 272 Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~ 351 (1720)
++..+++++..+|++.. .+-..++.+++.++-=
T Consensus 639 -le~~~l~vi~~iL~~~i--------------~dfyeE~~ei~~~~t~-------------------------------- 671 (1010)
T KOG1991|consen 639 -LEPIVLPVIGFILKNDI--------------TDFYEELLEIVSSLTF-------------------------------- 671 (1010)
T ss_pred -HHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHhhhhh--------------------------------
Confidence 11233334444333211 0111122221111000
Q ss_pred CCCCCCCccchhhHHHhhcc-CHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHH
Q 000286 352 QDDTNGNASEVSAREKLLSD-QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISS 430 (1720)
Q Consensus 352 ~~~~~~~~~~~~~r~~~~~~-~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss 430 (1720)
+.++ .|++ =.|||++++++.-.. .+-=-...-++.+.|.+-.++.+........+..
T Consensus 672 ----------------~~~~Isp~m-----W~ll~li~e~~~~~~-~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~ 729 (1010)
T KOG1991|consen 672 ----------------LSKEISPIM-----WGLLELILEVFQDDG-IDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLE 729 (1010)
T ss_pred ----------------hhcccCHHH-----HHHHHHHHHHHhhhh-HHHHHHHHHHHhhheeeCchhhhccchHHHHHHH
Confidence 0001 2332 278889999887653 3344567888999999999877776666677888
Q ss_pred HHHHHhhcCC--CchHHhHHHHHHHHHh---hCchhhhhhHHh
Q 000286 431 FLAGVLAWKD--PHVLIPSLQIAEILME---KLPGTFSKMFVR 468 (1720)
Q Consensus 431 ~la~il~~~d--~~lv~~aL~i~~~Ll~---K~pd~f~~~f~R 468 (1720)
.+..+|.+++ ..=..+|-++.+.++. -++|-|.+.|.+
T Consensus 730 i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~ 772 (1010)
T KOG1991|consen 730 IIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLE 772 (1010)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHH
Confidence 8888888754 3334456677777663 345556666655
No 99
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.55 E-value=0.3 Score=61.17 Aligned_cols=151 Identities=16% Similarity=0.031 Sum_probs=116.9
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhh
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL 136 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il 136 (1720)
.++.|+..|...+.+++...|+++|.-.- .+ .+|..|+ ..+......++..++.+|+.|-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~--~~---------~~~~~L~-~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQE--DA---------LDLRSVL-AVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccC--Ch---------HHHHHHH-HHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 68889999965556888877777764221 11 1488999 88888899999999999997643
Q ss_pred hcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHH
Q 000286 137 RAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPD 216 (1720)
Q Consensus 137 ~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~ 216 (1720)
......|+.+|+..++.+++.++.++.. ...+..+.|..+|++.|+.|...|+.+|.+|...
T Consensus 116 -~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------ 177 (410)
T TIGR02270 116 -RQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPRR------ 177 (410)
T ss_pred -hHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc------
Confidence 3466788889988888888888866665 1234577899999999999999999999998874
Q ss_pred HHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHH
Q 000286 217 KLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTC 261 (1720)
Q Consensus 217 ~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nL 261 (1720)
..++.|...+.+. ++.+...++..++.+
T Consensus 178 --------~a~~~L~~al~d~---------~~~VR~aA~~al~~l 205 (410)
T TIGR02270 178 --------LSESTLRLYLRDS---------DPEVRFAALEAGLLA 205 (410)
T ss_pred --------cchHHHHHHHcCC---------CHHHHHHHHHHHHHc
Confidence 4566677777766 688999999999776
No 100
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.55 E-value=0.29 Score=59.25 Aligned_cols=193 Identities=21% Similarity=0.191 Sum_probs=125.1
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccccccc---ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc--
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFS---VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDV-- 87 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~---~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~-- 87 (1720)
++...+..|... ....+..||..|+++|...-- ..++ ...++..+.+.++.+. .+-+..|++++.-++--
T Consensus 44 ~L~~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~---~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 44 KLKEAIDLLTEK-SSSTREAALEALIRALSSRYL---PDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLG 118 (309)
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcC
Confidence 477788888766 689999999999999976432 2233 3347889999998775 46677898988877654
Q ss_pred CCcchhhhcccccHHHHHHHHhcCC-cHHHHHHHHHHHHHhhc---cCcchhhh-cCchhHHhh--hhc--c--------
Q 000286 88 LPSSCAAVVHYGAVTCFVARLLTIE-YMDLAEQSLQALKKISQ---EHPTACLR-AGALMAVLS--YLD--F-------- 150 (1720)
Q Consensus 88 ~p~~~~~vV~~GaVp~Lv~kLL~~~-~~dl~Eqal~aL~nIS~---~~~~~Il~-~GgL~~LL~--lLd--~-------- 150 (1720)
.-.....+.+ .+.|.|...+.... .+.++..|+.||+.++- .....+.+ ...+..+.. ++. .
T Consensus 119 ~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 119 AGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred CCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence 2234444443 68888884444433 46677788888888753 22222221 011221111 111 1
Q ss_pred CChHHHHHHHHHHHHhccCCCCchh-HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000286 151 FSTGVQRVALSTAANMCKKLPSDAA-DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF 211 (1720)
Q Consensus 151 ~~~~vqr~Al~aLsNlc~~~~~~~~-~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~ 211 (1720)
.+..++-.|+.+-+-+....+...+ ......+|.|..+|.+.|.+|+..|--+|+-|.+..
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 1234666665555555554444222 345779999999999999999999999999887753
No 101
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.48 E-value=0.43 Score=59.16 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=107.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccCCcchh
Q 000286 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~-~~eiq~~AaraLtNL~~~~p~~~~ 93 (1720)
+.+...+-++ +..++-.|.+.+|-++... ..+..+...++=--++..|..+. +..=..+|.+.+..+++... ..
T Consensus 28 ~~i~~~lL~~-~~~vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~- 102 (371)
T PF14664_consen 28 ERIQCMLLSD-SKEVRAAGYRILRYLISDE--ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GP- 102 (371)
T ss_pred HHHHHHHCCC-cHHHHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Cc-
Confidence 3344344455 5788888888887777653 33444444444334455555432 33334578888887777622 11
Q ss_pred hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCc
Q 000286 94 AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSD 173 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~ 173 (1720)
.-+-.|+|..|+ .+.+.++..++..|+.+|..|+-.+|..+.++||+..++..+-.....+...++.++..+.......
T Consensus 103 ~~~~~~vvralv-aiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 103 KEIPRGVVRALV-AIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred ccCCHHHHHHHH-HHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 223557888999 8888999999999999999999999999999999999999987665567777888888887654443
Q ss_pred h
Q 000286 174 A 174 (1720)
Q Consensus 174 ~ 174 (1720)
.
T Consensus 182 ~ 182 (371)
T PF14664_consen 182 K 182 (371)
T ss_pred h
Confidence 3
No 102
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.45 E-value=3.3 Score=54.98 Aligned_cols=168 Identities=15% Similarity=0.192 Sum_probs=125.0
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccccc
Q 000286 21 LRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGA 100 (1720)
Q Consensus 21 L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~Ga 100 (1720)
|.+. +.+.+.+|++.+=.....++. ...+.|-+++... ..|.|++...=-=|-++++..|+.+-. +
T Consensus 28 l~s~-n~~~kidAmK~iIa~M~~G~d-------mssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~lL-----a 93 (757)
T COG5096 28 LESS-NDYKKIDAMKKIIAQMSLGED-------MSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELALL-----A 93 (757)
T ss_pred cccc-ChHHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHHH-----H
Confidence 5554 667788888766444443332 3346777788877 457999987777788888888844333 5
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhC
Q 000286 101 VTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVME 180 (1720)
Q Consensus 101 Vp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~ 180 (1720)
|+.++ +=++.+++.++--|+++|+.|=. ..+ -...++++.+.+++....+.|+|+-||.++-+-.+ +...-.+
T Consensus 94 vNti~-kDl~d~N~~iR~~AlR~ls~l~~---~el-~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~--~l~~~~g 166 (757)
T COG5096 94 VNTIQ-KDLQDPNEEIRGFALRTLSLLRV---KEL-LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK--DLYHELG 166 (757)
T ss_pred HHHHH-hhccCCCHHHHHHHHHHHHhcCh---HHH-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH--hhhhccc
Confidence 66777 77789999999999999998822 123 33478899999999999999999999999986321 1122344
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 181 AVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 181 ~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
.+-.+..++..+|+.|+.+|+.+|..|..
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 77888888999999999999999988876
No 103
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=7.6 Score=50.85 Aligned_cols=180 Identities=15% Similarity=0.193 Sum_probs=121.7
Q ss_pred CCcccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000286 7 SSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1720)
Q Consensus 7 ~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~ 86 (1720)
.....-+-..|...|.+. .....++|+..|-.+...+.+ ...+-|..|+-.... |.+++...---|.-+|+
T Consensus 30 f~sd~~~~~dL~~lLdSn-kd~~KleAmKRIia~iA~G~d-------vS~~Fp~VVKNVask-n~EVKkLVyvYLlrYAE 100 (968)
T KOG1060|consen 30 FLSDNIRHDDLKQLLDSN-KDSLKLEAMKRIIALIAKGKD-------VSLLFPAVVKNVASK-NIEVKKLVYVYLLRYAE 100 (968)
T ss_pred eecCCCChHHHHHHHhcc-ccHHHHHHHHHHHHHHhcCCc-------HHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHhh
Confidence 344555778889999887 557788888877666655433 455788888888766 69998877666777777
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHh
Q 000286 87 VLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1720)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1720)
..|+-+- + -|-.+. +=|.-++..++.-|+.+|.-|=-- ++.-=.|-++-+.....+.-+.+.|+.++-.|
T Consensus 101 eqpdLAL--L---SIntfQ-k~L~DpN~LiRasALRvlSsIRvp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKL 170 (968)
T KOG1060|consen 101 EQPDLAL--L---SINTFQ-KALKDPNQLIRASALRVLSSIRVP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKL 170 (968)
T ss_pred cCCCcee--e---eHHHHH-hhhcCCcHHHHHHHHHHHHhcchh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHH
Confidence 6665433 2 255666 778888899998777777766221 11111223333444567788888888888877
Q ss_pred ccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 167 CKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 167 c~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
-+-.+... ...+..+..||...++.|+-.|+.|+--+|-
T Consensus 171 YsLd~e~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 171 YSLDPEQK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred hcCChhhH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 65322211 2456677788888999999999999887775
No 104
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=0.91 Score=58.29 Aligned_cols=210 Identities=15% Similarity=0.138 Sum_probs=146.9
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccH
Q 000286 22 RADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV 101 (1720)
Q Consensus 22 ~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaV 101 (1720)
++. +.+..-.|+..|+.+ .+.+ ....+.+-++.+|++.- |-+...|.-+|+-++.-.|+.... +.
T Consensus 119 ~S~-n~ye~giAL~GLS~f---vTpd-----LARDLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr~-----~F 183 (877)
T KOG1059|consen 119 NSS-NVYEVGLALSGLSCI---VTPD-----LARDLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALRP-----CF 183 (877)
T ss_pred ccC-ccchhhheecccccc---cCch-----hhHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHhh-----hH
Confidence 444 556666666666544 3333 24567888999999874 899999999999999988877664 78
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch----------hh----hcCchhHHhhhhccCC---h-----------
Q 000286 102 TCFVARLLTIEYMDLAEQSLQALKKISQEHPTA----------CL----RAGALMAVLSYLDFFS---T----------- 153 (1720)
Q Consensus 102 p~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~----------Il----~~GgL~~LL~lLd~~~---~----------- 153 (1720)
|.|++ =|+-+++.|+-.|+.+++-+|+.+|+. ++ .+-.|-.++.++...+ +
T Consensus 184 prL~E-kLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt 262 (877)
T KOG1059|consen 184 PRLVE-KLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPIT 262 (877)
T ss_pred HHHHH-hccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHH
Confidence 99994 458899999999999999999998851 11 1224444444442211 1
Q ss_pred -HHHH-HHHHHHHHhcc-----CC---CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHh
Q 000286 154 -GVQR-VALSTAANMCK-----KL---PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCN 223 (1720)
Q Consensus 154 -~vqr-~Al~aLsNlc~-----~~---~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~ 223 (1720)
.+.+ .|+..+..|.. +. -.+....++-|+..|..++..+|+.+.--+|.|++.|..- ++..+++..
T Consensus 263 ~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt---Hp~~Vqa~k- 338 (877)
T KOG1059|consen 263 ELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT---HPKAVQAHK- 338 (877)
T ss_pred HHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh---CHHHHHHhH-
Confidence 1111 13333333322 11 1245567888999999999999999999999999999985 776666554
Q ss_pred CCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcC
Q 000286 224 HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG 264 (1720)
Q Consensus 224 ~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~ 264 (1720)
.-++++|... +.+++..||..|--|++-
T Consensus 339 ----dlIlrcL~Dk---------D~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 339 ----DLILRCLDDK---------DESIRLRALDLLYGMVSK 366 (877)
T ss_pred ----HHHHHHhccC---------CchhHHHHHHHHHHHhhh
Confidence 4567778765 577999999988877653
No 105
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.17 E-value=0.19 Score=63.72 Aligned_cols=205 Identities=20% Similarity=0.258 Sum_probs=128.8
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
.++.++..|... -....+.+++-|+-+.... +..+ ..-...+||.|.+.|-+.+ ++++..+..||..+++.....-
T Consensus 255 llpsll~~l~~~-kWrtK~aslellg~m~~~a-p~qL-s~~lp~iiP~lsevl~DT~-~evr~a~~~~l~~~~svidN~d 330 (569)
T KOG1242|consen 255 LLPSLLGSLLEA-KWRTKMASLELLGAMADCA-PKQL-SLCLPDLIPVLSEVLWDTK-PEVRKAGIETLLKFGSVIDNPD 330 (569)
T ss_pred hhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhc-hHHH-HHHHhHhhHHHHHHHccCC-HHHHHHHHHHHHHHHHhhccHH
Confidence 355566666544 4456667777776444433 2222 2334568999999998775 9999999999999986432111
Q ss_pred hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhh----ccCChHHHHHHHHHHHHhcc
Q 000286 93 AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYL----DFFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lL----d~~~~~vqr~Al~aLsNlc~ 168 (1720)
|. -.||.|++.+ ..+.- -... |+..|....--..+++-.+..++-+| +.-+..+.|.++.++-|+|+
T Consensus 331 --I~--~~ip~Lld~l-~dp~~-~~~e---~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 331 --IQ--KIIPTLLDAL-ADPSC-YTPE---CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred --HH--HHHHHHHHHh-cCccc-chHH---HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 11 1345555222 22211 1222 33333332222334445555555555 45578888999999999999
Q ss_pred CC--CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCC
Q 000286 169 KL--PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1720)
Q Consensus 169 ~~--~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~ 237 (1720)
-. +..-.......+|.|...+...++++..-+..+|+.+.++. .+....++++.+.+.+...
T Consensus 402 LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~-------g~~~f~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 402 LVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERL-------GEVSFDDLIPELSETLTSE 465 (569)
T ss_pred hhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH-------HhhcccccccHHHHhhccc
Confidence 44 44444556778899999888889999999999999888852 1111167788888888654
No 106
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.16 E-value=2.1 Score=53.13 Aligned_cols=191 Identities=15% Similarity=0.132 Sum_probs=132.4
Q ss_pred HHHHHHHHhcCCCccc-ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCC
Q 000286 34 LTQLCEMLSIGTEESL-STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIE 112 (1720)
Q Consensus 34 l~~L~~lL~~~~~~~l-~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~ 112 (1720)
+..|++++... +.+ ..+.-..+.+.+..+|-+++ .++...|-|++.++.... +....+++.+ ++.++-+-|..+
T Consensus 4 ~N~Lv~l~~~~--p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~-~~l~~~~~l~-id~~ii~SL~~~ 78 (371)
T PF14664_consen 4 ANDLVDLLKRH--PTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDE-ESLQILLKLH-IDIFIIRSLDRD 78 (371)
T ss_pred HHHHHHHHHhC--chhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCH-HHHHHHHHcC-CchhhHhhhccc
Confidence 45666666653 222 23444446666666565554 899999999999988754 5666677666 555554555554
Q ss_pred c--HHHHHHHHHHHHHhhccCcc-hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhh
Q 000286 113 Y--MDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL 189 (1720)
Q Consensus 113 ~--~dl~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL 189 (1720)
. ..=+|||+.-+..+..-... .-+-.|.+.+++...+..+....+.|+.+++-+|-..| +.....+.+..|.+.+
T Consensus 79 ~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l 156 (371)
T PF14664_consen 79 NKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRAL 156 (371)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHH
Confidence 3 33467999999888765222 34567788889999998888999999999999997543 4445678899999987
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhc
Q 000286 190 QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIS 235 (1720)
Q Consensus 190 ~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~ 235 (1720)
.....++.+..+.++.++.+ +|...+.+...--+..+..-+.
T Consensus 157 ~d~~~~~~~~l~~~lL~lLd----~p~tR~yl~~~~dL~~l~apft 198 (371)
T PF14664_consen 157 IDGSFSISESLLDTLLYLLD----SPRTRKYLRPGFDLESLLAPFT 198 (371)
T ss_pred HhccHhHHHHHHHHHHHHhC----CcchhhhhcCCccHHHHHHhhh
Confidence 76655699999999999999 6666665554323444444443
No 107
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.15 E-value=0.49 Score=62.69 Aligned_cols=265 Identities=17% Similarity=0.112 Sum_probs=178.2
Q ss_pred CCcccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000286 7 SSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1720)
Q Consensus 7 ~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~ 86 (1720)
.......++-.++-|-|. --++-||.-|++.|-++.= .+..-..-|+-|-.++||++.. .|++-.-+.+=+.|+.
T Consensus 467 ~r~PPeQLPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpW-AV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILA 541 (1387)
T KOG1517|consen 467 SRTPPEQLPIVLQVLLSQ---VHRLRALVLLARFLDLGPW-AVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILA 541 (1387)
T ss_pred cCCChHhcchHHHHHHHH---HHHHHHHHHHHHHhccchh-hhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHh
Confidence 344566788888888776 5688899999999998731 1233345589999999999874 8888777777778888
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCCc--HHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhccCChHHHHH-HH
Q 000286 87 VLPSSCAAVVHYGAVTCFVARLLTIEY--MDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRV-AL 160 (1720)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~~--~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~-Al 160 (1720)
..+.+-..+|+.++=..+++.|-.+++ .+=+--|+-+|.-|.+..+. ++++.+.|..|+..|........|. ++
T Consensus 542 vD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~ 621 (1387)
T KOG1517|consen 542 VDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLC 621 (1387)
T ss_pred cCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHH
Confidence 887665567766555555533433243 35666788899999988663 7999999999999998754455554 66
Q ss_pred HHHHHhccCCCCchhHHHh-CcHHHHHHhhccCCHHHHHHHHHHHHHHHhh----cCCCHHHHHHHHh--------CCcH
Q 000286 161 STAANMCKKLPSDAADFVM-EAVPLLTNLLQYHDAKVLEHASVCLTRIAEA----FASSPDKLDELCN--------HGLV 227 (1720)
Q Consensus 161 ~aLsNlc~~~~~~~~~~v~-~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~----~~~~~~~~~~li~--------~gll 227 (1720)
-||..|-.+.+...+..++ .+...|..+|..+-++|...|+.||..+..+ |......++..++ .+.+
T Consensus 622 icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i 701 (1387)
T KOG1517|consen 622 ICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLI 701 (1387)
T ss_pred HHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHH
Confidence 6777777776666666554 5889999999999999999999999998886 3222233333332 0112
Q ss_pred H----HHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhh
Q 000286 228 T----QAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDIL 285 (1720)
Q Consensus 228 ~----~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL 285 (1720)
. .++.+++.. ++-+...+.-+|+.++.+...+...+.-..+++-...+.
T Consensus 702 ~~~~~~ll~~vsdg---------splvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~~~~lE 754 (1387)
T KOG1517|consen 702 IKGLMSLLALVSDG---------SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPESSSLE 754 (1387)
T ss_pred HhhHHHHHHHHhcc---------chHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccchhhhh
Confidence 2 333344333 444556666666766666655555444444444443333
No 108
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.086 Score=64.98 Aligned_cols=179 Identities=13% Similarity=0.053 Sum_probs=130.0
Q ss_pred cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Q 000286 51 TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1720)
Q Consensus 51 ~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1720)
.+....++..|+++|.+++ .-++.-+.-+++|..---..-...++..|.|..|+ +++.+.+..++...+|+|..+--.
T Consensus 426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~-~~v~sKDdaLqans~wvlrHlmyn 503 (743)
T COG5369 426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLV-NLVMSKDDALQANSEWVLRHLMYN 503 (743)
T ss_pred hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHH-HHhhcchhhhhhcchhhhhhhhhc
Confidence 5666778999999998542 44455778888888866666667788999999999 888888999999999999988654
Q ss_pred Ccc----hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCC----CCchhHHHhC----cHHHHHHhhccCCHHHHH
Q 000286 131 HPT----ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKL----PSDAADFVME----AVPLLTNLLQYHDAKVLE 198 (1720)
Q Consensus 131 ~~~----~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~----~~~~~~~v~~----~lP~L~~LL~~~D~~V~e 198 (1720)
+.+ ..+..-|+..++.|.+...-.+|.+++.++.|+.-+. ...++..... .+..|..-+...++--.+
T Consensus 504 cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 504 CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 443 4778889999999999999999999999999976522 2223222111 345566666667777777
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhC-CcHHHHHHhh
Q 000286 199 HASVCLTRIAEAFASSPDKLDELCNH-GLVTQAATLI 234 (1720)
Q Consensus 199 ~A~~aLs~L~~~~~~~~~~~~~li~~-gll~~Lv~LL 234 (1720)
..|..|.+++.. +.+..+.+++. +++.-+-++|
T Consensus 584 ~~~yilv~~aa~---d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 584 EGCYILVRNAAC---DDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred hhHHHHHHHHhc---cchHHHHHHhHHHHHHHHHHHH
Confidence 779999999885 55555555543 3444444444
No 109
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.05 E-value=0.42 Score=59.86 Aligned_cols=253 Identities=15% Similarity=0.170 Sum_probs=154.1
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHH---HHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHH---HHHHHHHHH
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQL---CEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIM---LLAARALTH 83 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L---~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq---~~AaraLtN 83 (1720)
.+--+..++..|++. -|..+..|+.-+ ..+|..+.+.. .+...|. .|.+-|. ++.||+. +.|..||++
T Consensus 602 l~~ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~--~l~klg~--iLyE~lg-e~ypEvLgsil~Ai~~I~s 675 (975)
T COG5181 602 LSMIVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETK--ELAKLGN--ILYENLG-EDYPEVLGSILKAICSIYS 675 (975)
T ss_pred hHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHH--HHHHHhH--HHHHhcC-cccHHHHHHHHHHHHHHhh
Confidence 344566778888887 677777776543 34444443321 1111121 2344444 3457764 456666666
Q ss_pred hhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhh---ccCChHHHHHHH
Q 000286 84 LCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYL---DFFSTGVQRVAL 160 (1720)
Q Consensus 84 L~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lL---d~~~~~vqr~Al 160 (1720)
...-.. .+.- -.|++|.|. -.|......+.+..+..++.|+...+..|--..=+..|..++ ...+.++.|+|.
T Consensus 676 v~~~~~--mqpP-i~~ilP~lt-PILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~ 751 (975)
T COG5181 676 VHRFRS--MQPP-ISGILPSLT-PILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNAT 751 (975)
T ss_pred hhcccc--cCCc-hhhcccccc-HhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhh
Confidence 654331 1111 247899999 888899999999999999999999887554444444454444 456889999999
Q ss_pred HHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCC
Q 000286 161 STAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSG 240 (1720)
Q Consensus 161 ~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~ 240 (1720)
.++.-+++-..+ ++++.+|.+-|..++.........+++-.++- .|....|--||..-.+
T Consensus 752 ~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~-------------cgpfsVlP~lm~dY~T- 811 (975)
T COG5181 752 ETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEY-------------CGPFSVLPTLMSDYET- 811 (975)
T ss_pred hhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhh-------------cCchhhHHHHHhcccC-
Confidence 999988875443 34677777777777665554444445444432 2434444444443221
Q ss_pred CCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCccccccccc
Q 000286 241 GGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPP 298 (1720)
Q Consensus 241 ~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~ 298 (1720)
-..+++..+|++++.+-..--+++..-+ .-+.|.|...|+..+.....+++|
T Consensus 812 -----Pe~nVQnGvLkam~fmFeyig~~s~dYv-y~itPlleDAltDrD~vhRqta~n 863 (975)
T COG5181 812 -----PEANVQNGVLKAMCFMFEYIGQASLDYV-YSITPLLEDALTDRDPVHRQTAMN 863 (975)
T ss_pred -----chhHHHHhHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhcccchHHHHHHHH
Confidence 1467899999999987644323222211 346788888888776644444333
No 110
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=95.03 E-value=1.2 Score=56.62 Aligned_cols=231 Identities=18% Similarity=0.169 Sum_probs=151.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC----CCHHHHHHHHHHHHHhhccCCcchhhhc-cc
Q 000286 24 DGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE----SNPDIMLLAARALTHLCDVLPSSCAAVV-HY 98 (1720)
Q Consensus 24 ~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~----~~~eiq~~AaraLtNL~~~~p~~~~~vV-~~ 98 (1720)
..++....+|+++||+++.... ...+.+...|..+.+++.|+.. .+.++++..+|.|--++...++....++ ++
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~-~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSP-SARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 3488999999999999999853 2225688889999999999865 2689999999999998888888777666 44
Q ss_pred ccHHHHHHHHhcC----------------CcHHHHHHHHHHHHHhhccCcchh--hhcCchhHHhhhhccC---------
Q 000286 99 GAVTCFVARLLTI----------------EYMDLAEQSLQALKKISQEHPTAC--LRAGALMAVLSYLDFF--------- 151 (1720)
Q Consensus 99 GaVp~Lv~kLL~~----------------~~~dl~Eqal~aL~nIS~~~~~~I--l~~GgL~~LL~lLd~~--------- 151 (1720)
+++..|++.|-.+ ...++...++.+|-||....+... .....++.++..|...
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 6777666444211 245667789999999988877644 3555666666554322
Q ss_pred ChHHHHHHHHHHHHhccCC----------------CCchhHHHhCcHHHHHHhhccC-C---HHHHHHHHHHHHHHHhhc
Q 000286 152 STGVQRVALSTAANMCKKL----------------PSDAADFVMEAVPLLTNLLQYH-D---AKVLEHASVCLTRIAEAF 211 (1720)
Q Consensus 152 ~~~vqr~Al~aLsNlc~~~----------------~~~~~~~v~~~lP~L~~LL~~~-D---~~V~e~A~~aLs~L~~~~ 211 (1720)
.......++.++.|+-... ...+...+...+-.|-..|... + .+.+.-.+.+|.+++..
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~- 280 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARA- 280 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHh-
Confidence 2356677888888873210 0122222333333333333322 2 25677777888888885
Q ss_pred CCCHHHHHHHHh----------------CCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHH
Q 000286 212 ASSPDKLDELCN----------------HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPL 267 (1720)
Q Consensus 212 ~~~~~~~~~li~----------------~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~ 267 (1720)
+....+.+-. ..+-.+|++|+.+. .+.+...+...|-.||..+..
T Consensus 281 --~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~---------~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 281 --AREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP---------DPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred --cHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC---------CchHHHHHHHHHHHHHhhhHH
Confidence 3322222221 13777888888775 255777777777778766544
No 111
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=95.02 E-value=0.089 Score=54.39 Aligned_cols=119 Identities=13% Similarity=0.009 Sum_probs=102.1
Q ss_pred ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 50 STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 50 ~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
..+...+.+..||.=++...+.+.|....--|.|++= .|-+...+.+..++..++ .-++-++.-+.|-++..|+|+|-
T Consensus 10 hgi~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFv-dsl~e~ne~LvefgIgglCNlC~ 87 (173)
T KOG4646|consen 10 HGIDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFV-DSLEEQNELLVEFGIGGLCNLCL 87 (173)
T ss_pred ccCcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHH-HHhhcccHHHHHHhHHHHHhhcc
Confidence 3466777899999999877788998877777778764 566777888999999999 77888999999999999999999
Q ss_pred cCcc--hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCC
Q 000286 130 EHPT--ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKL 170 (1720)
Q Consensus 130 ~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~ 170 (1720)
+..+ .|.+++|++.++..+......+.-.|+.++..+|-..
T Consensus 88 d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 88 DKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred ChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcc
Confidence 8775 6999999999999999888888888999999999854
No 112
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.89 E-value=0.34 Score=61.73 Aligned_cols=242 Identities=16% Similarity=0.200 Sum_probs=149.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHH---hcCCCcccccccccCcHHHHHHhhcCCCCHHHH---HHHHHHHHHhhcc
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEML---SIGTEESLSTFSVDSFAPVLVGLLNHESNPDIM---LLAARALTHLCDV 87 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL---~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq---~~AaraLtNL~~~ 87 (1720)
+-.++..|++. -+..+.+|+.-++.+. .++.+..+ +--.|+ .|.+-|..+ .||+. +-|..||+|...-
T Consensus 801 ~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~--m~~lGv--vLyEylgee-ypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 801 CSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKL--MGHLGV--VLYEYLGEE-YPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred HHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHH--HHHhhH--HHHHhcCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 34556677776 6777777776665543 34433221 222222 356666544 57764 4666677776532
Q ss_pred CCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhh---hhccCChHHHHHHHHHHH
Q 000286 88 LPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLS---YLDFFSTGVQRVALSTAA 164 (1720)
Q Consensus 88 ~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~---lLd~~~~~vqr~Al~aLs 164 (1720)
.. -..-+ .+.+|.|. -.|......++|.|+..++.||...+..|-.-.=+..|.. +|....-++.|.|+.++.
T Consensus 875 ~k-m~pPi--~dllPrlt-PILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG 950 (1172)
T KOG0213|consen 875 TK-MTPPI--KDLLPRLT-PILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFG 950 (1172)
T ss_pred cc-cCCCh--hhhcccch-HhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 21 11112 36889998 8888999999999999999999998876544444444444 444667889999999999
Q ss_pred HhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCC
Q 000286 165 NMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1720)
Q Consensus 165 Nlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~ 244 (1720)
.+++-..+. +++.+|.+-|..++..-......+|+-.++-+ . -..++|.|++--..+
T Consensus 951 ~IakaIGPq------dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c--~--------pFtVLPalmneYrtP------- 1007 (1172)
T KOG0213|consen 951 YIAKAIGPQ------DVLATLLNNLKVQERQNRVCTTVAIAIVAETC--G--------PFTVLPALMNEYRTP------- 1007 (1172)
T ss_pred HHHHhcCHH------HHHHHHHhcchHHHHHhchhhhhhhhhhhhhc--C--------chhhhHHHHhhccCc-------
Confidence 988755433 46777777777766555544444444444320 0 012455555544443
Q ss_pred CCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcc
Q 000286 245 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS 291 (1720)
Q Consensus 245 ~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~ 291 (1720)
..+++..+|++|+.+-..--+....-| .-+.|.|...|...+..
T Consensus 1008 --e~nVQnGVLkalsf~FeyigemskdYi-yav~PlleDAlmDrD~v 1051 (1172)
T KOG0213|consen 1008 --EANVQNGVLKALSFMFEYIGEMSKDYI-YAVTPLLEDALMDRDLV 1051 (1172)
T ss_pred --hhHHHHhHHHHHHHHHHHHHHHhhhHH-HHhhHHHHHhhccccHH
Confidence 467999999999987643323222222 23567788888766553
No 113
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.85 E-value=0.84 Score=57.70 Aligned_cols=203 Identities=18% Similarity=0.243 Sum_probs=125.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHH----HHHHHHHHHhh-ccC
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIM----LLAARALTHLC-DVL 88 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq----~~AaraLtNL~-~~~ 88 (1720)
++.+++.....+++..+..+++.++-++....... ..+.++..+..-+........+ ...+|+..-+. .+.
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD----DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh----hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 44555555555578889999998886665532211 2223444444444111122333 33445444333 222
Q ss_pred CcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch-----------hhhc----CchhHHhhhhccCCh
Q 000286 89 PSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA-----------CLRA----GALMAVLSYLDFFST 153 (1720)
Q Consensus 89 p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~-----------Il~~----GgL~~LL~lLd~~~~ 153 (1720)
| .... .+..|+ .++.. .++...+..+++-|..+.+.. ..+. -.++.+++.....+.
T Consensus 267 ~-~~~~-----~~~~L~-~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 267 P-LATE-----LLDKLL-ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred c-hHHH-----HHHHHH-HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 2 1111 344566 55554 788999999999999884431 1122 245555555555555
Q ss_pred HHHHHHHHHHHHhccCCCCchh-HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHH
Q 000286 154 GVQRVALSTAANMCKKLPSDAA-DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAAT 232 (1720)
Q Consensus 154 ~vqr~Al~aLsNlc~~~~~~~~-~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~ 232 (1720)
..+.+.+.+++++.++.|..-. ..+..++|.|..-|..+|.+++..++.+|..+... .++.+..-++ .+|++|++
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~---~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE---APELISEHLS-SLIPRLLK 413 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc---CHHHHHHHHH-HHHHHHHh
Confidence 5777889999999998874432 33567999999999999999999999999999985 5555555333 46666655
Q ss_pred h
Q 000286 233 L 233 (1720)
Q Consensus 233 L 233 (1720)
+
T Consensus 414 l 414 (415)
T PF12460_consen 414 L 414 (415)
T ss_pred c
Confidence 3
No 114
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.69 E-value=0.52 Score=62.42 Aligned_cols=231 Identities=16% Similarity=0.105 Sum_probs=152.6
Q ss_pred HHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhcc-C
Q 000286 76 LAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDF-F 151 (1720)
Q Consensus 76 ~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~-~ 151 (1720)
.|...|.-+.+-.|=.+...+.-|+.|..+ |||+++-.+|+---+-.-.+|-.-.+. .+++.+|-...+++|+. .
T Consensus 489 RAL~LL~RFLDlGpWAV~LaLsVGIFPYVL-KLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~ 567 (1387)
T KOG1517|consen 489 RALVLLARFLDLGPWAVDLALSVGIFPYVL-KLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQ 567 (1387)
T ss_pred HHHHHHHHHhccchhhhhhhhccchHHHHH-HHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcC
Confidence 455555555665565555667779999999 999999999987666666677443343 57888888888888875 3
Q ss_pred ChH-HHH-HHHHHHHHhccCCCCchhHHHh-CcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcH
Q 000286 152 STG-VQR-VALSTAANMCKKLPSDAADFVM-EAVPLLTNLLQYH-DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLV 227 (1720)
Q Consensus 152 ~~~-vqr-~Al~aLsNlc~~~~~~~~~~v~-~~lP~L~~LL~~~-D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll 227 (1720)
... -|| .|+.+|+-+|++-+..+..... +.+-+=...|+.+ ++-+..=+|.||.+|=.. .++..-.=...++.
T Consensus 568 ~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d---~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 568 AIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED---YDEARWSGRRDNAH 644 (1387)
T ss_pred CCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh---cchhhhccccccHH
Confidence 332 444 5888899999986655544444 4555445556664 577788899999999886 33333344466789
Q ss_pred HHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcC----CHHHHHHH------------HHcCChH---HHHHhhcCC
Q 000286 228 TQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG----SPLCAKTL------------LHLGISG---ILKDILSGS 288 (1720)
Q Consensus 228 ~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~----s~~~t~~L------------l~~gil~---~L~~LL~~~ 288 (1720)
.+|..+|..+ .+++...|+-+|+.+..+ .++++..+ +|..+.. .+..+++..
T Consensus 645 ekL~~~LsD~---------vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg 715 (1387)
T KOG1517|consen 645 EKLILLLSDP---------VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG 715 (1387)
T ss_pred HHHHHHhcCc---------cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc
Confidence 9999999876 688999999999999886 45555544 3333332 222233322
Q ss_pred Cc----ccccccccccCCCHHHHHHHHHHhhccCCCC
Q 000286 289 GV----SANSAVPPALSRPAEQIFEIVNLANELLPPL 321 (1720)
Q Consensus 289 ~~----~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L 321 (1720)
.+ +...+++..+.|...++.-+.. ..++|..
T Consensus 716 splvr~ev~v~ls~~~~g~~~~~~~va~--n~~~~~~ 750 (1387)
T KOG1517|consen 716 SPLVRTEVVVALSHFVVGYVSHLKVVAG--NYLLPES 750 (1387)
T ss_pred chHHHHHHHHHHHHHHHhhHHHhHHHhh--hhcccch
Confidence 21 1222333446677777776666 6666644
No 115
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.56 E-value=0.4 Score=61.96 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=107.3
Q ss_pred hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHH-hCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhc
Q 000286 134 ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFV-MEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAF 211 (1720)
Q Consensus 134 ~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v-~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~ 211 (1720)
.=+...+++.|..-++..++.+|..++.++-......+ +..+ +.++|.|.++ +++++..|+.+++.||..+++.
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~- 459 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR- 459 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-
Confidence 34445567767777777889999999999998886544 3444 4689999999 7788999999999999999964
Q ss_pred CCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcc
Q 000286 212 ASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVS 291 (1720)
Q Consensus 212 ~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~ 291 (1720)
++...-.+.+..+.+-+... .+.+...++++..++..-...- +.++-.+++|.+.-+.....
T Consensus 460 ------lD~~~v~d~~lpi~~~~~~~---------dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~-- 521 (700)
T KOG2137|consen 460 ------LDKAAVLDELLPILKCIKTR---------DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS-- 521 (700)
T ss_pred ------HHHHHhHHHHHHHHHHhcCC---------CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc--
Confidence 22222112233333433333 5778888888888776543332 34555667777766654322
Q ss_pred cccccccccCCCHHHHHHHHHHhhccCCCCCC
Q 000286 292 ANSAVPPALSRPAEQIFEIVNLANELLPPLPQ 323 (1720)
Q Consensus 292 ~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~ 323 (1720)
-+.+|--.++..|..++-.+++
T Consensus 522 ----------L~~~Qy~~~m~~i~~ml~~ie~ 543 (700)
T KOG2137|consen 522 ----------LNGEQYNKYMSEIRLMLSAIEK 543 (700)
T ss_pred ----------ccHHHHHHHHHHHHHHHhhhhH
Confidence 2568888888888888777665
No 116
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.14 E-value=1.1 Score=49.97 Aligned_cols=110 Identities=17% Similarity=0.201 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccH-HHH
Q 000286 26 EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAV-TCF 104 (1720)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaV-p~L 104 (1720)
||.++-.++..++.++..-++ ..+.++|.+..+|.++ ++.++..|..+|+.+..... +--.|-+ ..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~------~ve~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN------LVEPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDM-----IKVKGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH------HHHhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHH
Confidence 578899999999999887542 3567899999999988 59999999999999986432 2222433 677
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhhcc-CcchhhhcCchhHHhhhhcc
Q 000286 105 VARLLTIEYMDLAEQSLQALKKISQE-HPTACLRAGALMAVLSYLDF 150 (1720)
Q Consensus 105 v~kLL~~~~~dl~Eqal~aL~nIS~~-~~~~Il~~GgL~~LL~lLd~ 150 (1720)
+ .++.-++.+++..|..++..++.. .++.+ ...++.++..|..
T Consensus 69 l-~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 69 L-KLLVDENPEIRSLARSFFSELLKKRNPNII--YNNFPELISSLNN 112 (178)
T ss_pred H-HHHcCCCHHHHHHHHHHHHHHHHhccchHH--HHHHHHHHHHHhC
Confidence 7 788889999999999999999987 55444 2345555555543
No 117
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=94.04 E-value=0.063 Score=43.89 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=32.6
Q ss_pred hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhcc
Q 000286 134 ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 134 ~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1720)
.+++.|+++.++.+|...+..+++.|+|++.|++.
T Consensus 7 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 7 AVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 68899999999999998899999999999999974
No 118
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=1.8 Score=50.89 Aligned_cols=236 Identities=14% Similarity=0.159 Sum_probs=129.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccc---ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHH-------
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESL---STFSVDSFAPVLVGLLNHESNPDIMLLAARALTH------- 83 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l---~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtN------- 83 (1720)
++.|-.+|..+ |..+..-|+.++..++..++...+ ..+...+++|.++.++..++ .++-..|...|..
T Consensus 84 mpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhcHHH
Confidence 44555567776 778888899999999998864332 34567889999999998763 4444444333333
Q ss_pred ------------------------------------hhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 000286 84 ------------------------------------LCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKI 127 (1720)
Q Consensus 84 ------------------------------------L~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nI 127 (1720)
|.+.+|+....+-.+|.+..|...|-...+.-+.-.|+.....+
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 33445555555555555555554444445555555555555555
Q ss_pred hccC-c-chhhhcCchhHHhhhhccC--ChHHHHHHHHHHHHhccCCC-Cc-hhHHHhCcHHH----HHHhhccCCHHHH
Q 000286 128 SQEH-P-TACLRAGALMAVLSYLDFF--STGVQRVALSTAANMCKKLP-SD-AADFVMEAVPL----LTNLLQYHDAKVL 197 (1720)
Q Consensus 128 S~~~-~-~~Il~~GgL~~LL~lLd~~--~~~vqr~Al~aLsNlc~~~~-~~-~~~~v~~~lP~----L~~LL~~~D~~V~ 197 (1720)
+--+ . ..+-+.|.|..+.+.+... ++--.-.++-....+..+.. .+ ..+.+.+.+|+ -...+..+|+..+
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 5322 2 2455666666666655421 11111112222222222110 00 11112222222 2233567788888
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHhCC--cHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000286 198 EHASVCLTRIAEAFASSPDKLDELCNHG--LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1720)
Q Consensus 198 e~A~~aLs~L~~~~~~~~~~~~~li~~g--ll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas 263 (1720)
+.|.-++..+.. +.+..+.+...| ...+++.-..+.+ ...-+..++++|.+|+.
T Consensus 322 eaAiDalGilGS----nteGadlllkTgppaaehllarafdqn--------ahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 322 EAAIDALGILGS----NTEGADLLLKTGPPAAEHLLARAFDQN--------AHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHhccC----CcchhHHHhccCChHHHHHHHHHhccc--------ccchHHHHHHHHHHhhc
Confidence 888888877765 455666666665 3455555444442 22346778888888775
No 119
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=0.69 Score=59.82 Aligned_cols=213 Identities=18% Similarity=0.253 Sum_probs=138.9
Q ss_pred cchHHHHHHH----hhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000286 11 SGRLKKILSG----LRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1720)
Q Consensus 11 ~~~l~~Ll~~----L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~ 86 (1720)
...++.|++. |++. ++.+.|.+++.+-.+.-.. ....++.+||++|.. +.++|....++|.-|+.
T Consensus 282 d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~--------~~~~i~kaLvrLLrs--~~~vqyvvL~nIa~~s~ 350 (968)
T KOG1060|consen 282 DPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKN--------QVTKIAKALVRLLRS--NREVQYVVLQNIATISI 350 (968)
T ss_pred CccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHH--------HHHHHHHHHHHHHhc--CCcchhhhHHHHHHHHh
Confidence 4566677776 3566 8999988887775443321 345679999999985 47888887777777765
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCCc-HHHHHHHHHHHHHhhccCcc-hhhhcCchhHHhhhhccCChHHHHHHHHHHH
Q 000286 87 VLPSSCAAVVHYGAVTCFVARLLTIEY-MDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLDFFSTGVQRVALSTAA 164 (1720)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~~-~dl~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLs 164 (1720)
..|. +. -|.|-...+.+.+ ..+.--=+..|.+|+....- .|+ .-+..|+...+-.+--.|+.++.
T Consensus 351 ~~~~----lF----~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~IL-----rE~q~YI~s~d~~faa~aV~AiG 417 (968)
T KOG1060|consen 351 KRPT----LF----EPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEIL-----RELQTYIKSSDRSFAAAAVKAIG 417 (968)
T ss_pred cchh----hh----hhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHH-----HHHHHHHhcCchhHHHHHHHHHH
Confidence 4441 11 1222211222222 33444445566666654432 343 34566776655568888899999
Q ss_pred HhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCC
Q 000286 165 NMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 244 (1720)
Q Consensus 165 Nlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~ 244 (1720)
.|+..... .-..|+..|+.+|.+.|..|+..+...|-.|... +|....++ +.+|..+|.+-
T Consensus 418 rCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~---~p~~h~~i-----i~~La~lldti------- 478 (968)
T KOG1060|consen 418 RCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK---DPAEHLEI-----LFQLARLLDTI------- 478 (968)
T ss_pred HHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh---ChHHHHHH-----HHHHHHHhhhh-------
Confidence 98875422 2235889999999999999999999999999985 66555444 46777777443
Q ss_pred CCChhHHHHHHHHHHHHhcCCHH
Q 000286 245 SLSTPTYTGLIRLLSTCASGSPL 267 (1720)
Q Consensus 245 ~ls~~i~~~alr~L~nLas~s~~ 267 (1720)
.-+..+-.++|+++-.|.--+.
T Consensus 479 -~vp~ARA~IiWLige~~e~vpr 500 (968)
T KOG1060|consen 479 -LVPAARAGIIWLIGEYCEIVPR 500 (968)
T ss_pred -hhhhhhceeeeeehhhhhhcch
Confidence 1345666778888888765433
No 120
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.74 E-value=1.4 Score=55.53 Aligned_cols=188 Identities=16% Similarity=0.200 Sum_probs=117.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccc
Q 000286 19 SGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHY 98 (1720)
Q Consensus 19 ~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~ 98 (1720)
++|-.+ +|++--.-+.++|-+.+...-..+ +-|..|++|.|.-+|++.+ ..++....-.+.-|+...|+.+..--=-
T Consensus 653 E~lge~-ypEvLgsil~Ai~~I~sv~~~~~m-qpPi~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi~~rEWM 729 (975)
T COG5181 653 ENLGED-YPEVLGSILKAICSIYSVHRFRSM-QPPISGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYIGVREWM 729 (975)
T ss_pred HhcCcc-cHHHHHHHHHHHHHHhhhhccccc-CCchhhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccCCHHHHH
Confidence 344443 788777777888877776543322 3467899999999999875 8899899999999999888754420000
Q ss_pred ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-Ccchh-------------------------h-hc-C---chhHHhhh
Q 000286 99 GAVTCFVARLLTIEYMDLAEQSLQALKKISQE-HPTAC-------------------------L-RA-G---ALMAVLSY 147 (1720)
Q Consensus 99 GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~-~~~~I-------------------------l-~~-G---gL~~LL~l 147 (1720)
-+-=-|+ .+|.+-+.+++..|..+++.||+- .|..| + +. | +++.++.=
T Consensus 730 RIcfeLv-d~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~d 808 (975)
T COG5181 730 RICFELV-DSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSD 808 (975)
T ss_pred HHHHHHH-HHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhc
Confidence 0111244 566688999999999999999874 22111 1 11 1 12222221
Q ss_pred hccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 148 LDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 148 Ld~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
-......+|.-.+.+++-+...........+--+.|.|...|...|+--..-|...+..|+-+
T Consensus 809 Y~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 809 YETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred ccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 122344566666666666555444444455666677777777777766666666666666654
No 121
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=3.9 Score=48.30 Aligned_cols=261 Identities=15% Similarity=0.111 Sum_probs=152.4
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccc--cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSV--DSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~--~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p 89 (1720)
+.+.+++..|.+- .|.++..|+..+..+... ..+.+.. ...++.|.+++.... + -..|+++|.|++.. .
T Consensus 3 s~l~elv~ll~~~-sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~-~ 73 (353)
T KOG2973|consen 3 SELVELVELLHSL-SPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQK-E 73 (353)
T ss_pred hHHHHHHHHhccC-ChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhh-H
Confidence 3567888888887 899999999888655444 2333332 236889999998653 3 44899999999864 2
Q ss_pred cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--h---hhh----cCchhHHhhhhccCCh--HHHHH
Q 000286 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--A---CLR----AGALMAVLSYLDFFST--GVQRV 158 (1720)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~---Il~----~GgL~~LL~lLd~~~~--~vqr~ 158 (1720)
.....+++. .+..++ ..+..+.-.+++-.+..|.|++++... . .+. .|.+.....+.+..-. .-.-.
T Consensus 74 ~l~~~ll~~-~~k~l~-~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~y 151 (353)
T KOG2973|consen 74 ELRKKLLQD-LLKVLM-DMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHY 151 (353)
T ss_pred HHHHHHHHH-HHHHHH-HHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhH
Confidence 344455544 555555 444455568899999999999998664 1 222 3333444444442211 12234
Q ss_pred HHHHHHHhccCCCCchhHHHhCcHHHHHHh-hccCCHHHHH-HHHHHHHHHHhhcCCCHHHHHHHHhC--CcHHHHHHhh
Q 000286 159 ALSTAANMCKKLPSDAADFVMEAVPLLTNL-LQYHDAKVLE-HASVCLTRIAEAFASSPDKLDELCNH--GLVTQAATLI 234 (1720)
Q Consensus 159 Al~aLsNlc~~~~~~~~~~v~~~lP~L~~L-L~~~D~~V~e-~A~~aLs~L~~~~~~~~~~~~~li~~--gll~~Lv~LL 234 (1720)
...+++|+.+......+......+|.=.-+ +...|..|.. .+...|-|.|- +......+++. .+++.|..=|
T Consensus 152 lA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cF----d~~~h~~lL~e~~~lLp~iLlPl 227 (353)
T KOG2973|consen 152 LAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCF----DAKLHEVLLDESINLLPAILLPL 227 (353)
T ss_pred HHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhc----cchhHHHHhcchHHHHHHHHhhc
Confidence 566778888766555555555555433333 3445665554 34455556554 33333444432 2343333222
Q ss_pred cCCCCCC-----------------CCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000286 235 STSNSGG-----------------GQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1720)
Q Consensus 235 ~~~~~~~-----------------~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1720)
...+.-+ -...-++.+....+-+|-.||+.-.. .+.+-+.|+-++|..+=...
T Consensus 228 agpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G-Re~lR~kgvYpilRElhk~e 297 (353)
T KOG2973|consen 228 AGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG-REVLRSKGVYPILRELHKWE 297 (353)
T ss_pred CCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh-HHHHHhcCchHHHHHHhcCC
Confidence 1110000 01234678899999999999976433 34555678777777755443
No 122
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=4.7 Score=53.61 Aligned_cols=260 Identities=13% Similarity=0.136 Sum_probs=167.5
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
-+-++-++..|....++.+|.-|++.+..+.. +.+++..+...+++-.|+.+|-+ -|.....+.-.|+.+++ +++
T Consensus 1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta--n~~Cv~~~a~~~vL~~LL~lLHS--~PS~R~~vL~vLYAL~S-~~~ 1844 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLATA--NKECVTDLATCNVLTTLLTLLHS--QPSMRARVLDVLYALSS-NGQ 1844 (2235)
T ss_pred hcccHHHHHHHHHcCCchHHHHHHHHHHHHhc--ccHHHHHHHhhhHHHHHHHHHhc--ChHHHHHHHHHHHHHhc-CcH
Confidence 34566677778877799999999999965444 46788888899999999999964 36777777778888775 455
Q ss_pred chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc---Ccc--------------hhhhcCchhHHhhhhcc---
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE---HPT--------------ACLRAGALMAVLSYLDF--- 150 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~---~~~--------------~Il~~GgL~~LL~lLd~--- 150 (1720)
-......+|++.-+...+-.+.....+-|+...|+++-.+ .|. .+++.|- .+.+..+..
T Consensus 1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P-EAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP-EAAVHMFESTSE 1923 (2235)
T ss_pred HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH-HHHHHHHhccCC
Confidence 6667778888776664555566677778888888877554 111 0222221 222222210
Q ss_pred --------------------------------------------------------------------------------
Q 000286 151 -------------------------------------------------------------------------------- 150 (1720)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (1720)
T Consensus 1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence
Q ss_pred -------------CChHHHHHHHHHHHHhccCCCC-chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHH
Q 000286 151 -------------FSTGVQRVALSTAANMCKKLPS-DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPD 216 (1720)
Q Consensus 151 -------------~~~~vqr~Al~aLsNlc~~~~~-~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~ 216 (1720)
...+.......++.-+.+..|. .+..---+-+|.++..+.+.+..+=..|+..|-.|+. +.-
T Consensus 2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse----n~~ 2079 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE----NQF 2079 (2235)
T ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh----ccH
Confidence 0001111111111222221111 1111113457888888777777677788888888888 677
Q ss_pred HHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHh-cCCHHHHHHHHHcCChHHHHHhhcCCCc
Q 000286 217 KLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA-SGSPLCAKTLLHLGISGILKDILSGSGV 290 (1720)
Q Consensus 217 ~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLa-s~s~~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1720)
..+++.....+..++.+|... +...--|+.+|-.+. +...+...+.+++|+++.|.+||.+...
T Consensus 2080 C~~AMA~l~~i~~~m~~mkK~----------~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL 2144 (2235)
T KOG1789|consen 2080 CCDAMAQLPCIDGIMKSMKKQ----------PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSSTL 2144 (2235)
T ss_pred HHHHHhccccchhhHHHHHhc----------chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccccc
Confidence 788888888888888888653 234445666665543 5567788889999999999999987653
No 123
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.57 E-value=2.1 Score=56.56 Aligned_cols=279 Identities=17% Similarity=0.176 Sum_probs=176.4
Q ss_pred CCCcccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcC--CC-CHHHHHHHHHHHH
Q 000286 6 SSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH--ES-NPDIMLLAARALT 82 (1720)
Q Consensus 6 ~~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~--~~-~~eiq~~AaraLt 82 (1720)
+.|..+.-++.|++.+.++ |+.|+--|..|.+++....-+ .....++.+..+|-. +. ..-.....+.||+
T Consensus 885 ~vgnl~~yLpfil~qi~sq--pk~QyLLLhSlkevi~~~svd-----~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLG 957 (1233)
T KOG1824|consen 885 AVGNLPKYLPFILEQIESQ--PKRQYLLLHSLKEVIVSASVD-----GLKPYVEKIWALLFKHCECAEEGTRNVVAECLG 957 (1233)
T ss_pred hcCchHhHHHHHHHHHhcc--hHhHHHHHHHHHHHHHHhccc-----hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhh
Confidence 3445567778888888664 888888888888888765433 112334455555531 11 2334667889999
Q ss_pred HhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhccCChHHHHHHH
Q 000286 83 HLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFSTGVQRVAL 160 (1720)
Q Consensus 83 NL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~~~vqr~Al 160 (1720)
-++...|+. .+|.|- .++.++....+--++.+......+.+. .++....+...+.++...+.++.|.|+
T Consensus 958 kL~l~epes--------LlpkL~-~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaL 1028 (1233)
T KOG1824|consen 958 KLVLIEPES--------LLPKLK-LLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVAL 1028 (1233)
T ss_pred hHHhCChHH--------HHHHHH-HHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 999988865 688888 888999999999899999887777664 355555677788888999999999999
Q ss_pred HHHHHhccCCCCchhHHHhCcHHHHHHhhccCC----------------------HHHHHHHHHHHHHHHhhcCCCHHHH
Q 000286 161 STAANMCKKLPSDAADFVMEAVPLLTNLLQYHD----------------------AKVLEHASVCLTRIAEAFASSPDKL 218 (1720)
Q Consensus 161 ~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D----------------------~~V~e~A~~aLs~L~~~~~~~~~~~ 218 (1720)
.++...+.+.| ..+++.+|.|...|.++. -++...|.-|+..|.+.. -+++
T Consensus 1029 vv~nSaahNKp----slIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdsc---ld~~ 1101 (1233)
T KOG1824|consen 1029 VVLNSAAHNKP----SLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSC---LDRL 1101 (1233)
T ss_pred HHHHHHHccCH----hHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhh---hhhc
Confidence 99998887765 356777777766664321 246667777877777741 1111
Q ss_pred HHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCccccccccc
Q 000286 219 DELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPP 298 (1720)
Q Consensus 219 ~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~ 298 (1720)
+.. ..+..+..=|.. -..++.-..-+|..++.-+|.....-++. +++.|...++.-.+ ..++-.
T Consensus 1102 dit---~Fl~~~~~GL~D----------hydiKmlt~l~l~rLa~lcPs~VlqrlD~-l~EpLr~t~~~k~k--~~svKq 1165 (1233)
T KOG1824|consen 1102 DIT---EFLNHVEDGLED----------HYDIKMLTFLMLARLADLCPSAVLQRLDR-LVEPLRKTCTLKVK--ANSVKQ 1165 (1233)
T ss_pred cHH---HHHHHHHhhcch----------hhHHHHHHHHHHHHHHhhCcHHHHHHHHH-HHHHHHHHhhcccc--cchHhH
Confidence 100 011111111211 13466667777888888888877665552 45566666654332 111100
Q ss_pred ccCCCHHHHHHHHHHhhcc--CCCCCC
Q 000286 299 ALSRPAEQIFEIVNLANEL--LPPLPQ 323 (1720)
Q Consensus 299 i~~~~~~qi~~vi~li~~L--LP~L~~ 323 (1720)
=.....+....+++.+..| +|..++
T Consensus 1166 E~ek~~eLkRSAlRav~~L~~ip~v~~ 1192 (1233)
T KOG1824|consen 1166 EFEKQDELKRSALRAVAALLTIPEVEK 1192 (1233)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccc
Confidence 0112455667777777777 554433
No 124
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.33 E-value=4.2 Score=53.86 Aligned_cols=210 Identities=15% Similarity=0.254 Sum_probs=139.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcc
Q 000286 18 LSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVH 97 (1720)
Q Consensus 18 l~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~ 97 (1720)
++.+.-+.-+..+..|++.+|-... ...+..+ .-+++..|+++.... ..++-..-..+|+-++..+|+..... +
T Consensus 496 v~~l~~~~~~~~ki~a~~~~~~~~~---~~vl~~~-~p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~-~ 569 (1005)
T KOG2274|consen 496 VNALTMDVPPPVKISAVRAFCGYCK---VKVLLSL-QPMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASM-E 569 (1005)
T ss_pred HHhhccCCCCchhHHHHHHHHhccC---ceecccc-chHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhh-h
Confidence 3444433345666677776665541 2222222 224566666666544 46777677788999999998776543 4
Q ss_pred cccHHHHHHHH-hcCCcHHHHHHHHHHHHHhhccCcch-hhhcCchhHHhhhhccCC----hHHHHHHHHHHHHhccCCC
Q 000286 98 YGAVTCFVARL-LTIEYMDLAEQSLQALKKISQEHPTA-CLRAGALMAVLSYLDFFS----TGVQRVALSTAANMCKKLP 171 (1720)
Q Consensus 98 ~GaVp~Lv~kL-L~~~~~dl~Eqal~aL~nIS~~~~~~-Il~~GgL~~LL~lLd~~~----~~vqr~Al~aLsNlc~~~~ 171 (1720)
+-+.|.+++-. ..++++-++.++--+++.++....+. =...-.||.+++.|+-.. +..+-.|+-++.-+.|+.+
T Consensus 570 skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp 649 (1005)
T KOG2274|consen 570 SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP 649 (1005)
T ss_pred cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC
Confidence 45677776433 34667888888888888888743331 334456888999887544 7788888888888888665
Q ss_pred Cc-hhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC-C-----cHHHHHHhhcC
Q 000286 172 SD-AADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH-G-----LVTQAATLIST 236 (1720)
Q Consensus 172 ~~-~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~-g-----ll~~Lv~LL~~ 236 (1720)
++ .-..+.-++|.+.++ |+++|...+.++--||..++.. ..+++..--.. | ++..+-+||..
T Consensus 650 ~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~---~~eq~~t~~~e~g~~~~yImqV~sqLLdp 719 (1005)
T KOG2274|consen 650 SPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV---TLEQLLTWHDEPGHNLWYIMQVLSQLLDP 719 (1005)
T ss_pred CCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc---CHHHHHhhccCCCccHHHHHHHHHHHcCC
Confidence 44 445567899999999 7778899999999999999885 55544443332 2 34455555543
No 125
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.31 E-value=9.7 Score=49.34 Aligned_cols=293 Identities=14% Similarity=0.195 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhc
Q 000286 31 VEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLT 110 (1720)
Q Consensus 31 l~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~ 110 (1720)
.+-|-+.+++|....... .....-..++..-+. +...+..|+..|..+...-|+.... ||.+++ .|.+
T Consensus 2 ie~lY~~~~~L~~a~d~~----~~~~~y~~il~~~kg--~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~-DLcE 69 (556)
T PF05918_consen 2 IEKLYENYEILADAKDKS----QHEEDYKEILDGVKG--SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQL-DLCE 69 (556)
T ss_dssp HHHHHHHHHHHHHTGGGG----GGHHHHHHHHHGGGS---HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHH-HHHT
T ss_pred HHHHHHHHhHhhcCCCcc----cCHHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHH-HHHh
Confidence 355667778887653210 111123333344442 5889999999999999988877665 556777 8889
Q ss_pred CCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc
Q 000286 111 IEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ 190 (1720)
Q Consensus 111 ~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~ 190 (1720)
-++..|+.||+..|-.||.+.++.|-+ ....|+|+|...+..-...+-++|..+.+.. ..+.+-.|...+.
T Consensus 70 Ded~~iR~~aik~lp~~ck~~~~~v~k--vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 70 DEDVQIRKQAIKGLPQLCKDNPEHVSK--VADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIE 140 (556)
T ss_dssp -SSHHHHHHHHHHGGGG--T--T-HHH--HHHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhHHHHHHhHHHHHhH--HHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHH
Confidence 999999999999999999998765543 3456777776544333333334444443311 2333444444443
Q ss_pred ---cCCHHHHHHHHHHHHHHHhhcCC----CHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000286 191 ---YHDAKVLEHASVCLTRIAEAFAS----SPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1720)
Q Consensus 191 ---~~D~~V~e~A~~aLs~L~~~~~~----~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas 263 (1720)
..|..+.+.++..|..-...+.. ..+..+.++ +..+-.+|..- +..-+..++.+|..+-.
T Consensus 141 ~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i----~~~ikkvL~DV---------TaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 141 SSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFI----VDEIKKVLQDV---------TAEEFELFMSLLKSLKI 207 (556)
T ss_dssp ---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHH----HHHHHHHCTT-----------HHHHHHHHHHHHTSGG
T ss_pred hcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHH----HHHHHHHHHhc---------cHHHHHHHHHHHHhCcc
Confidence 57788888877666433322111 112233332 44555555432 34444455555555433
Q ss_pred ----CCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCC
Q 000286 264 ----GSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGP 339 (1720)
Q Consensus 264 ----~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~ 339 (1720)
.+..-.+.|++ .+.....-... +. ....+.|..+|..+..-+|....++
T Consensus 208 ~~~~~t~~g~qeLv~-----ii~eQa~Ld~~---f~-----~sD~e~Idrli~C~~~Alp~fs~~v-------------- 260 (556)
T PF05918_consen 208 YGGKQTIEGRQELVD-----IIEEQADLDQP---FD-----PSDPESIDRLISCLRQALPFFSRGV-------------- 260 (556)
T ss_dssp ---GSSHHHHHHHHH-----HHHHHHTTTS-----------SSSHHHHHHHHHHHHHHGGG-BTTB--------------
T ss_pred ccccCChHHHHHHHH-----HHHHHhccCCC---CC-----CcCHHHHHHHHHHHHHhhHHhcCCC--------------
Confidence 12333333332 22221110000 11 1134444445444444455332221
Q ss_pred cccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHH
Q 000286 340 VVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMI 419 (1720)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L 419 (1720)
.....+.-|...+||.|-++ ....|-..|.++.=|..|+.+...
T Consensus 261 -------------------------------~Sskfv~y~~~kvlP~l~~l-----~e~~kl~lLk~lAE~s~~~~~~d~ 304 (556)
T PF05918_consen 261 -------------------------------SSSKFVNYMCEKVLPKLSDL-----PEDRKLDLLKLLAELSPFCGAQDA 304 (556)
T ss_dssp ---------------------------------HHHHHHHHHHTCCCTT----------HHHHHHHHHHHHHTT----TH
T ss_pred -------------------------------ChHHHHHHHHHHhcCChhhC-----ChHHHHHHHHHHHHHcCCCCcccH
Confidence 13455666668889988776 556788888888888888876443
Q ss_pred H
Q 000286 420 Q 420 (1720)
Q Consensus 420 ~ 420 (1720)
.
T Consensus 305 ~ 305 (556)
T PF05918_consen 305 R 305 (556)
T ss_dssp H
T ss_pred H
Confidence 3
No 126
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=16 Score=47.82 Aligned_cols=148 Identities=16% Similarity=0.087 Sum_probs=96.0
Q ss_pred cCcHHHHHHhhcC----C---CCHHHHHHHHHHHHHhhc--cCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHH
Q 000286 55 DSFAPVLVGLLNH----E---SNPDIMLLAARALTHLCD--VLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALK 125 (1720)
Q Consensus 55 ~g~Vp~LV~lL~~----~---~~~eiq~~AaraLtNL~~--~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~ 125 (1720)
.|.++-++.+|.. + +|+--..-|.|.+.++.+ ..+.....+.++=+|+.++ --+.+++-=++-+|+..+.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~-P~f~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI-PAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh-HhhcCcccchHHHHHHHHH
Confidence 5789999999942 1 222233356677777766 2233334455544555555 5557889999999999999
Q ss_pred HhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCch--hHHHhCcHHHHHHhhccCCHHHHHHHHHH
Q 000286 126 KISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA--ADFVMEAVPLLTNLLQYHDAKVLEHASVC 203 (1720)
Q Consensus 126 nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~--~~~v~~~lP~L~~LL~~~D~~V~e~A~~a 203 (1720)
.++.|-++..+-..+.......+.+....++-.|+-|+.-+..+..... ..++.+.+..|..|-+.-+.+++..+.-.
T Consensus 486 ~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~ 565 (970)
T COG5656 486 TIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMES 565 (970)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHH
Confidence 9988888777767778888888888888899999888887777552211 22333444444444444455555544443
No 127
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.10 E-value=1.2 Score=60.35 Aligned_cols=186 Identities=16% Similarity=0.186 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC---CCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHH
Q 000286 28 GKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE---SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCF 104 (1720)
Q Consensus 28 ~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~---~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~L 104 (1720)
+...+++..+|+.=.-..+.. ....+.|.++++.+.+ .+|++|..|.-||+-++..+.+.+.. ..|.|
T Consensus 895 Dd~~d~i~~icE~eLl~gek~----lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~ll 965 (1251)
T KOG0414|consen 895 DDLADLISGICEKELLYGEKS----LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLL 965 (1251)
T ss_pred hhHHHHHHHHHHHHHhcChHH----HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHH
Confidence 444556666665333222221 2345788889888643 36999999999999999987766553 67899
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHH
Q 000286 105 VARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPL 184 (1720)
Q Consensus 105 v~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~ 184 (1720)
+..|-.++.+-++.+++-+|+-++-..|+.+=. --..+...|...++.++++|+-+++++.-+ +...+++.++-
T Consensus 966 ftimeksp~p~IRsN~VvalgDlav~fpnlie~--~T~~Ly~rL~D~~~~vRkta~lvlshLILn----dmiKVKGql~e 1039 (1251)
T KOG0414|consen 966 FTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEP--WTEHLYRRLRDESPSVRKTALLVLSHLILN----DMIKVKGQLSE 1039 (1251)
T ss_pred HHHHhcCCCceeeecchheccchhhhcccccch--hhHHHHHHhcCccHHHHHHHHHHHHHHHHh----hhhHhcccHHH
Confidence 955555999999999999999999887764322 124456667788999999999999999864 55778999999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCC
Q 000286 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1720)
Q Consensus 185 L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~ 237 (1720)
+..+|..+++.|..-|-..+--|... . ..+. +++|.++.-|++.
T Consensus 1040 MA~cl~D~~~~IsdlAk~FF~Els~k---~----n~iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1040 MALCLEDPNAEISDLAKSFFKELSSK---G----NTIY--NLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhhc---c----cchh--hhchHHHHhhccC
Confidence 99999999999987776666666653 1 2222 4677777777665
No 128
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.00 E-value=1.1 Score=55.48 Aligned_cols=256 Identities=15% Similarity=0.146 Sum_probs=144.6
Q ss_pred CCCCcccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 000286 5 ASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHL 84 (1720)
Q Consensus 5 ~~~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL 84 (1720)
|...+-...+..|+++|.+..-...+..++.+||..+.. ..-...|...|++..+++.+.+.....+--.|+-|+.++
T Consensus 14 Gen~rf~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~--~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~ 91 (361)
T PF07814_consen 14 GENQRFADEVEYLLDGLESSSSSSVRRSSLLELASKCAD--PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYV 91 (361)
T ss_pred hhhhhHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCC--HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 334455668889999998654568899999999988875 233357889999999999996543333444555566666
Q ss_pred hccCCcchhhhcccccHHHHHHHHhcCC-------c-------------------------------------HHHHHHH
Q 000286 85 CDVLPSSCAAVVHYGAVTCFVARLLTIE-------Y-------------------------------------MDLAEQS 120 (1720)
Q Consensus 85 ~~~~p~~~~~vV~~GaVp~Lv~kLL~~~-------~-------------------------------------~dl~Eqa 120 (1720)
........+.+.+.+.+..++ +|+... . ..-+--|
T Consensus 92 l~~d~~~~~l~~~~~~~~ll~-~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~la 170 (361)
T PF07814_consen 92 LSRDGLNMHLLLDRDSLRLLL-KLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLA 170 (361)
T ss_pred HccCCcchhhhhchhHHHHHH-HHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHH
Confidence 655443444444555555555 666611 0 0111123
Q ss_pred HHHHHHhhc---cC--------------cchhhhcCchhHHhhhhcc----C------------ChHHHHHHHHHHHHhc
Q 000286 121 LQALKKISQ---EH--------------PTACLRAGALMAVLSYLDF----F------------STGVQRVALSTAANMC 167 (1720)
Q Consensus 121 l~aL~nIS~---~~--------------~~~Il~~GgL~~LL~lLd~----~------------~~~vqr~Al~aLsNlc 167 (1720)
+.||+.++. .. .+.+...||+..++..+.. . .......+++++=|..
T Consensus 171 ll~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T 250 (361)
T PF07814_consen 171 LLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVT 250 (361)
T ss_pred HHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHH
Confidence 344444421 00 0124556678888887741 1 1122334667777766
Q ss_pred cCCCCchhHHH---hCcHHHHHHh-hc---cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCC---
Q 000286 168 KKLPSDAADFV---MEAVPLLTNL-LQ---YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS--- 237 (1720)
Q Consensus 168 ~~~~~~~~~~v---~~~lP~L~~L-L~---~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~--- 237 (1720)
......+...+ ...++.+... +. .....++..++..+.||+.. +++..+.+...+++..+..+...-
T Consensus 251 ~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~---n~~~c~~~~s~~l~~~~~~i~~~~~~~ 327 (361)
T PF07814_consen 251 FLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN---NPSACEEFASPKLGQQLGLIVTSFFCV 327 (361)
T ss_pred hcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC---CccchHhhhhhHhccchHHHHHhhccc
Confidence 53332222221 1233333222 22 22344566777888888875 778877877776555543333210
Q ss_pred --CCCCCCCCCChhHHHHHHHHHHHHhcCCH
Q 000286 238 --NSGGGQASLSTPTYTGLIRLLSTCASGSP 266 (1720)
Q Consensus 238 --~~~~~~~~ls~~i~~~alr~L~nLas~s~ 266 (1720)
.....+..-..++.+-++.+|.|++-.++
T Consensus 328 ~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 328 LSLPNYVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred ccccccccccccchHHHHHHHhHHHheeeCc
Confidence 00001222345678888888889887665
No 129
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.89 E-value=0.59 Score=60.72 Aligned_cols=188 Identities=21% Similarity=0.207 Sum_probs=129.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc---
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--- 133 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--- 133 (1720)
+..+|.++++++ ++.++..|+-|+.++-... ...+.+.|.++.|- .|+..+++.|...|+.+|..|...+++
T Consensus 122 ~~~Pl~~~l~d~-~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~-~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 122 LCDPLLKCLKDD-DPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALK-DLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHhccCC-ChhHHHHHHHHHHHhhcCC---hhhccccchhHHHH-HHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 567777888876 5999999999999997654 45577889999998 888888999999999999999887764
Q ss_pred hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCC
Q 000286 134 ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFAS 213 (1720)
Q Consensus 134 ~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~ 213 (1720)
..+..-.+..++.-+.+.+.--|-..+-++.+ ..+.++ .-...++..+...|+|....|+-.+...+.+++.-
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~---y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~--- 269 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQIFILDCLAE---YVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKY--- 269 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHh---cCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHH---
Confidence 22223334444444454444444333333333 334333 44566777888889999999999999999999985
Q ss_pred CHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHH
Q 000286 214 SPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPL 267 (1720)
Q Consensus 214 ~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~ 267 (1720)
.+. ....+-..+-+.++.++... + .++--+++-+..|....+.
T Consensus 270 ~~~-~~~~~~~K~~~pl~tlls~~---------~-e~qyvaLrNi~lil~~~p~ 312 (734)
T KOG1061|consen 270 LKQ-VNELLFKKVAPPLVTLLSSE---------S-EIQYVALRNINLILQKRPE 312 (734)
T ss_pred HHH-HHHHHHHHhcccceeeeccc---------c-hhhHHHHhhHHHHHHhChH
Confidence 222 33344344666777777654 3 5677777766666655555
No 130
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=4 Score=51.49 Aligned_cols=229 Identities=14% Similarity=0.080 Sum_probs=142.9
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhcCCCccccccc-ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccc
Q 000286 20 GLRADGEEGKQVEALTQLCEMLSIGTEESLSTFS-VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHY 98 (1720)
Q Consensus 20 ~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~-~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~ 98 (1720)
.|+.. +|..+.--+..|.-+.+.. .+..+- ...+.+-|..+|.++ +.+++..+--+|.++.......-..+-..
T Consensus 175 riy~~-n~~tR~flv~Wl~~Lds~P---~~~m~~yl~~~ldGLf~~LsD~-s~eVr~~~~t~l~~fL~eI~s~P~s~d~~ 249 (675)
T KOG0212|consen 175 RIYVI-NPMTRQFLVSWLYVLDSVP---DLEMISYLPSLLDGLFNMLSDS-SDEVRTLTDTLLSEFLAEIRSSPSSMDYD 249 (675)
T ss_pred HHhcC-CchHHHHHHHHHHHHhcCC---cHHHHhcchHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHhcCccccCcc
Confidence 34444 7888877777775544432 222221 234678888899876 58999888888877764322111112334
Q ss_pred ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch--hhhcCchhHHhhhhccCChH-HHHHHHH---HHHHhccCCCC
Q 000286 99 GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA--CLRAGALMAVLSYLDFFSTG-VQRVALS---TAANMCKKLPS 172 (1720)
Q Consensus 99 GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~--Il~~GgL~~LL~lLd~~~~~-vqr~Al~---aLsNlc~~~~~ 172 (1720)
..++.|+ .=+.++.+.+++-|+.=|..+-.-.++. ..-.|.+..+|..+...... +...+.. -+.-+|.....
T Consensus 250 ~~i~vlv-~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~ 328 (675)
T KOG0212|consen 250 DMINVLV-PHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERL 328 (675)
T ss_pred cchhhcc-ccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhh
Confidence 5788888 5567788899888877776666655553 44578888888888765443 3322221 12334442211
Q ss_pred chhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHH
Q 000286 173 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 252 (1720)
Q Consensus 173 ~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~ 252 (1720)
....-...++..|...|.++..+..-.++.-+..|-.. .+.++-. ....+.+.|..-|+.. +..++.
T Consensus 329 ~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~---~p~ql~~-h~~~if~tLL~tLsd~---------sd~vvl 395 (675)
T KOG0212|consen 329 KEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHK---APGQLLV-HNDSIFLTLLKTLSDR---------SDEVVL 395 (675)
T ss_pred ccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhh---Ccchhhh-hccHHHHHHHHhhcCc---------hhHHHH
Confidence 11123456788888889888777776666666655554 3332211 1235777888888765 688999
Q ss_pred HHHHHHHHHhcCCHH
Q 000286 253 GLIRLLSTCASGSPL 267 (1720)
Q Consensus 253 ~alr~L~nLas~s~~ 267 (1720)
.++..+++||..+..
T Consensus 396 ~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 396 LALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHhcCccc
Confidence 999999999987544
No 131
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.75 E-value=0.16 Score=52.10 Aligned_cols=72 Identities=18% Similarity=0.311 Sum_probs=60.4
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~ 129 (1720)
++..|+++|...+++.....||-=|+.++...|+.+..+-+.|+=..++ .|+..++.+|+.+|+.|+..|-.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM-~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVM-ELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHH-HHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHH-HHhcCCCHHHHHHHHHHHHHHHH
Confidence 7999999996665788888999999999999998877777778777777 99999999999999999988743
No 132
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.15 E-value=2.6 Score=57.13 Aligned_cols=222 Identities=18% Similarity=0.154 Sum_probs=135.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhh----ccCCcch
Q 000286 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLC----DVLPSSC 92 (1720)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~----~~~p~~~ 92 (1720)
+..+|++-.-...+++|+.-|..+-...+. ....+-++|-+|.++.++ ..++|..|...|+-+. +..+...
T Consensus 427 lts~IR~lk~~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 427 LTSCIRALKTIQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMDS-EADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 344444332346677777666544443322 244567899999999977 4899998877766665 3344333
Q ss_pred hhhcccccHHHHHHHHhcC-Cc-----------HHHHHHHHHHHHHhhc-------cCcc-------------hhhhcCc
Q 000286 93 AAVVHYGAVTCFVARLLTI-EY-----------MDLAEQSLQALKKISQ-------EHPT-------------ACLRAGA 140 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~-~~-----------~dl~Eqal~aL~nIS~-------~~~~-------------~Il~~Gg 140 (1720)
..+++ =..|.|- .|+.. .. ..++.+|..-|+.-=. +.++ .-+..++
T Consensus 502 niF~e-YlfP~L~-~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 502 NIFPE-YLFPHLN-HLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred hhhHh-hhhhhhH-hhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 33443 4677777 66655 22 3455555554433211 1111 1233334
Q ss_pred hhHHhhhhccCChHHHHHHHHHHHHhcc--C-CCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHH
Q 000286 141 LMAVLSYLDFFSTGVQRVALSTAANMCK--K-LPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDK 217 (1720)
Q Consensus 141 L~~LL~lLd~~~~~vqr~Al~aLsNlc~--~-~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~ 217 (1720)
=..+..+|....+-+.|..+..|.-||. + ....++ +++.|...|+..|..+.-.-.--|..++--. .
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~-----iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V-G---- 649 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDV-----ILSHLITFLNDKDWRLRGAFFDSIVGVSIFV-G---- 649 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccc-----hHHHHHHHhcCccHHHHHHHHhhccceEEEE-e----
Confidence 4455566666777888888888999997 2 222232 6899999999999887754444444444311 0
Q ss_pred HHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCC
Q 000286 218 LDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS 265 (1720)
Q Consensus 218 ~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s 265 (1720)
..-++..++|-|.+-|... .+.++..||.+|..||...
T Consensus 650 -~rs~seyllPLl~Q~ltD~---------EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 650 -WRSVSEYLLPLLQQGLTDG---------EEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred -eeeHHHHHHHHHHHhccCc---------chhhHHHHHHHHHHHHHhc
Confidence 0113445788888888876 4678999999999887654
No 133
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.10 E-value=8.1 Score=48.92 Aligned_cols=188 Identities=19% Similarity=0.252 Sum_probs=117.9
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHH-hhcc-
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTH-LCDV- 87 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtN-L~~~- 87 (1720)
...-++-++..+++. ++.+|+.|+..+.+.+.....+.+ .-..|++..+..++.+.++..+... +..+-+ ++.-
T Consensus 248 ~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l--~~~s~il~~iLpc~s~~e~~~i~~~-a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 248 YDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLL--LYLSGILTAILPCLSDTEEMSIKEY-AQMVNGLLLKLV 323 (675)
T ss_pred cccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchh--hhhhhhhhhcccCCCCCccccHHHH-HHHHHHHHHHHH
Confidence 334566777888887 999999999999999988655433 3345666677777765433333332 222221 2211
Q ss_pred -CCcchhhhcccc-cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch--hhhcCchhHHhhhhccCChHHHHHHHHHH
Q 000286 88 -LPSSCAAVVHYG-AVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA--CLRAGALMAVLSYLDFFSTGVQRVALSTA 163 (1720)
Q Consensus 88 -~p~~~~~vV~~G-aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~--Il~~GgL~~LL~lLd~~~~~vqr~Al~aL 163 (1720)
.+..... ++.| +|..|. +.+..+.++-+-.|+.=+-.|-...++. +........|+.-|...+..+.-.++..+
T Consensus 324 s~~~~~~~-id~~~ii~vl~-~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ll 401 (675)
T KOG0212|consen 324 SSERLKEE-IDYGSIIEVLT-KYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLL 401 (675)
T ss_pred hhhhhccc-cchHHHHHHHH-HHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 1111112 4444 455555 8888888888888887777776666664 33455678888888888999999999999
Q ss_pred HHhccCCCCchhHHHhCcHHHHHHhhc--cCCHHHHH-HHHHHHHHHHh
Q 000286 164 ANMCKKLPSDAADFVMEAVPLLTNLLQ--YHDAKVLE-HASVCLTRIAE 209 (1720)
Q Consensus 164 sNlc~~~~~~~~~~v~~~lP~L~~LL~--~~D~~V~e-~A~~aLs~L~~ 209 (1720)
+++|...... +.++.+..+|+ .+|.++++ -+-..+..||-
T Consensus 402 a~i~~s~~~~------~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 402 ASICSSSNSP------NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHhcCcccc------cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 9999865443 22555666543 34555443 23333344443
No 134
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.03 E-value=2.8 Score=55.65 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=47.4
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Q 000286 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1720)
Q Consensus 56 g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1720)
.+++.+.+++.+++ +.+...|+-|+.+|-...+ +.+.+.|.+-.+. .|+..+++.+...|+.+|..|-.+
T Consensus 127 ~~~~~ik~~l~d~~-ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~-~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 NIIDPIKKLLTDPH-AYVRKTAALAVAKLYRLDK---DLYHELGLIDILK-ELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHccCCc-HHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHH-HHhhCCCchHHHHHHHHHHHhchh
Confidence 35667777777663 7777777777777776544 2344556666666 667777777777777777777655
No 135
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.99 E-value=11 Score=43.33 Aligned_cols=207 Identities=13% Similarity=0.115 Sum_probs=131.3
Q ss_pred CCCcccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHH-hhc------C----CCCHHHH
Q 000286 6 SSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVG-LLN------H----ESNPDIM 74 (1720)
Q Consensus 6 ~~~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~-lL~------~----~~~~eiq 74 (1720)
+....+.++.+++..|.+. ..+..|+.+|++.......-..-..-..|....|.+ ++. - +.+..-.
T Consensus 20 ~~~~~~dk~~~~i~~l~~~---p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRV 96 (293)
T KOG3036|consen 20 SNASNNDKAYQLILSLVSP---PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRV 96 (293)
T ss_pred cccccccchhhHHHHhhCC---chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchH
Confidence 3445667788888888654 677889999998776433211111112232222221 111 1 1111222
Q ss_pred HHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcC-----CcHHHHHHHHHHHHHhhccCcc----hhhhcCchhHHh
Q 000286 75 LLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTI-----EYMDLAEQSLQALKKISQEHPT----ACLRAGALMAVL 145 (1720)
Q Consensus 75 ~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~-----~~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL 145 (1720)
.. +-+|.-+....|+.+..++++. ||..+-.+|.. ++.-++-.++.+++.+...... ..+..+.++.|+
T Consensus 97 cn-aL~LlQcvASHpdTr~~FL~A~-iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 97 CN-ALALLQCVASHPDTRRAFLRAH-IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HH-HHHHHHHHhcCcchHHHHHHcc-ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 22 3334444445677888888755 45444344443 4577888888888888776554 577899999999
Q ss_pred hhhccCChHHHHHHHHHHHHhccCC--------CCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHH
Q 000286 146 SYLDFFSTGVQRVALSTAANMCKKL--------PSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPD 216 (1720)
Q Consensus 146 ~lLd~~~~~vqr~Al~aLsNlc~~~--------~~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~~~~~~ 216 (1720)
..+++.+...+..|+.++--+..+. ..+.|..+..++-.++.- ...++..++.+++.|..+|++ ++.
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd----npr 250 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD----NPR 250 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC----CHH
Confidence 9999999999999999877655432 234566666666666555 456789999999999999999 554
Q ss_pred HHHHH
Q 000286 217 KLDEL 221 (1720)
Q Consensus 217 ~~~~l 221 (1720)
....+
T Consensus 251 ar~aL 255 (293)
T KOG3036|consen 251 ARAAL 255 (293)
T ss_pred HHHHH
Confidence 44443
No 136
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.97 E-value=0.44 Score=53.06 Aligned_cols=115 Identities=17% Similarity=0.119 Sum_probs=83.4
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcC--------CCCHHHHHHHHHHH
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH--------ESNPDIMLLAARAL 81 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~--------~~~~eiq~~AaraL 81 (1720)
.......++..|+.. .... ..+..|+..|......=+..|...|.+..|+++|.. +.+.+++.++.+||
T Consensus 64 ~~~~p~~~i~~L~~~-~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Cl 140 (187)
T PF06371_consen 64 AKSSPEWYIKKLKSR-PSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCL 140 (187)
T ss_dssp -CHHHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHcc-CccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHH
Confidence 345666788888765 2221 777888777776543334788888999999998862 24578999999999
Q ss_pred HHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 000286 82 THLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128 (1720)
Q Consensus 82 tNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS 128 (1720)
..|+.........+-..++|..|+ ..+.++.+.++.+|+..|..||
T Consensus 141 kal~n~~~G~~~v~~~~~~v~~i~-~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 141 KALMNTKYGLEAVLSHPDSVNLIA-LSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHTSSHHHHHHHHCSSSHHHHHH-HT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHcCcHHHHHHH-HHHCCCCHHHHHHHHHHHHHHH
Confidence 999976543333445789999999 8889999999999999998876
No 137
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=91.84 E-value=2.1 Score=53.73 Aligned_cols=181 Identities=13% Similarity=0.119 Sum_probs=104.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccc-------c------ccCcHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000286 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTF-------S------VDSFAPVLVGLLNHESNPDIMLLAARALT 82 (1720)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~-------~------~~g~Vp~LV~lL~~~~~~eiq~~AaraLt 82 (1720)
.|+..++.. |...|+.-++.++.-++|.+....-.. . ...+.|-|-..|++. -.-+++++||+++
T Consensus 212 GlLyq~kr~-dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k-~emV~lE~Ar~v~ 289 (898)
T COG5240 212 GLLYQSKRT-DKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDK-FEMVFLEAARAVC 289 (898)
T ss_pred HHHHHHhcc-cHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCc-chhhhHHHHHHHH
Confidence 456667666 888899999999888887765321000 0 011344444444433 2568899999999
Q ss_pred HhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcC-chhHHhhhhccCChHHHHHHHH
Q 000286 83 HLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAG-ALMAVLSYLDFFSTGVQRVALS 161 (1720)
Q Consensus 83 NL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~G-gL~~LL~lLd~~~~~vqr~Al~ 161 (1720)
.++.-+ .....++ -+|..|- .+|.+...-++-.|+.+|..||...|..|..++ -+..| +...+-.+ ++.
T Consensus 290 ~~~~~n--v~~~~~~-~~vs~L~-~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsL---Isd~Nr~I---sty 359 (898)
T COG5240 290 ALSEEN--VGSQFVD-QTVSSLR-TFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESL---ISDENRTI---STY 359 (898)
T ss_pred HHHHhc--cCHHHHH-HHHHHHH-HHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHH---hhcccccc---hHH
Confidence 988744 1122232 3667777 889999999999999999999998886544433 22222 22222222 233
Q ss_pred HHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000286 162 TAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIA 208 (1720)
Q Consensus 162 aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~ 208 (1720)
++..+.+.-...........+|.++.=+...=+.|+.+|+..|+.+-
T Consensus 360 AITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F 406 (898)
T COG5240 360 AITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF 406 (898)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC
Confidence 33333332222333334445555555554444555555555555443
No 138
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=91.14 E-value=5.3 Score=53.93 Aligned_cols=182 Identities=18% Similarity=0.189 Sum_probs=124.6
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccc
Q 000286 20 GLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYG 99 (1720)
Q Consensus 20 ~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~G 99 (1720)
.+-+. +...+.+|+..+-.++.... ....-...+++-.++++...+.|..+...|+-+|.-|+..........+ .+
T Consensus 261 ~~~s~-~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~ 336 (815)
T KOG1820|consen 261 EMLSK-KWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KN 336 (815)
T ss_pred hhhcc-chHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-Hh
Confidence 34454 89999999999999988654 2223445567888888888777888888999999999998876644433 26
Q ss_pred cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCC--CchhHH
Q 000286 100 AVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP--SDAADF 177 (1720)
Q Consensus 100 aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~--~~~~~~ 177 (1720)
+.|.|..+|.+ ....+++.++.++-.++.-.+ -.-.++.++.++.+.++.+.-.+...+..+.+... ...-..
T Consensus 337 v~p~lld~lke-kk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t 411 (815)
T KOG1820|consen 337 VFPSLLDRLKE-KKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKET 411 (815)
T ss_pred hcchHHHHhhh-ccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhh
Confidence 78888855543 455666666666655554221 11233445555666666655555444444444433 233345
Q ss_pred HhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 178 VMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 178 v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
+..++|.++...+..|..|...|..|++-+...
T Consensus 412 ~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 412 VKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred HHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999887774
No 139
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.95 E-value=27 Score=41.68 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=85.8
Q ss_pred hhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhH-HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHH
Q 000286 141 LMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAAD-FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLD 219 (1720)
Q Consensus 141 L~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~-~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~ 219 (1720)
+..++.++.+.++.+++.|+..+.++... +...+. .-...++.|..++...++ .+.|..++.|++. +....+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq----~~~l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ----KEELRK 77 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh----hHHHHH
Confidence 34577888888999999999999998876 322222 234578889999988877 8899999999998 677777
Q ss_pred HHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHH
Q 000286 220 ELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTL 272 (1720)
Q Consensus 220 ~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~L 272 (1720)
.+++. ++..++..+.... ...-..++.+|+|+++........+
T Consensus 78 ~ll~~-~~k~l~~~~~~p~---------~~lad~~cmlL~NLs~~~~~~~~ll 120 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDMLTDPQ---------SPLADLICMLLSNLSRDDDEVAALL 120 (353)
T ss_pred HHHHH-HHHHHHHHhcCcc---------cchHHHHHHHHHHhccCchHHHHHH
Confidence 77766 8888888887652 2345567788899988766554433
No 140
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=90.76 E-value=4.9 Score=47.43 Aligned_cols=176 Identities=18% Similarity=0.169 Sum_probs=112.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC----cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLP----SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP 132 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p----~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~ 132 (1720)
+.|.|-.=|..+ +..++..||.-+..|.+.+. ..+..||++|+.|.++ -.+--++.+++..|+..|..|+.-..
T Consensus 83 lmpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklil-dcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 83 LMPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLIL-DCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHH-HHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 444444444444 46788899999988888765 2334588999999999 77788899999999999999998655
Q ss_pred c--hhhhcCchhHHhhh-h-ccCChHHHHHHHHHHHHhccCCC-CchhHHHhCcHHHHHHhhcc-CCHHHHHHHHHHHHH
Q 000286 133 T--ACLRAGALMAVLSY-L-DFFSTGVQRVALSTAANMCKKLP-SDAADFVMEAVPLLTNLLQY-HDAKVLEHASVCLTR 206 (1720)
Q Consensus 133 ~--~Il~~GgL~~LL~l-L-d~~~~~vqr~Al~aLsNlc~~~~-~~~~~~v~~~lP~L~~LL~~-~D~~V~e~A~~aLs~ 206 (1720)
. .|+....+..+-.. | ...+.-+.-..+..+..+..-.+ ........+.+..|..=|.- .|.-|+.+++-.+..
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 3 57776655443211 1 11111112223333333333222 12222234556555555665 677777777777778
Q ss_pred HHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCC
Q 000286 207 IAEAFASSPDKLDELCNHGLVTQAATLISTSN 238 (1720)
Q Consensus 207 L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~ 238 (1720)
|+. .....+-+...|+++.+.+++.-.+
T Consensus 241 Lae----teHgreflaQeglIdlicnIIsGad 268 (524)
T KOG4413|consen 241 LAE----TEHGREFLAQEGLIDLICNIISGAD 268 (524)
T ss_pred HHH----HhhhhhhcchhhHHHHHHHHhhCCC
Confidence 887 3445666777899999999987653
No 141
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=90.07 E-value=19 Score=46.32 Aligned_cols=196 Identities=16% Similarity=0.096 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC--------------------------CHHHHHHHH
Q 000286 25 GEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES--------------------------NPDIMLLAA 78 (1720)
Q Consensus 25 ~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~--------------------------~~eiq~~Aa 78 (1720)
+|...+++|+..|++ .+ ..+ .+....+.|.|..+|..-- +........
T Consensus 82 ~d~~~~l~aL~~LT~---~G--rdi-~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll 155 (464)
T PF11864_consen 82 DDFDLRLEALIALTD---NG--RDI-DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLL 155 (464)
T ss_pred hhHHHHHHHHHHHHc---CC--cCc-hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHH
Confidence 366789999988863 22 223 2356677888887774100 111122334
Q ss_pred HHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhc--cCChHHH
Q 000286 79 RALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD--FFSTGVQ 156 (1720)
Q Consensus 79 raLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd--~~~~~vq 156 (1720)
.-+.|+...+......-.-.+.|..+|.-.......+..+.|+..|.-|..-. .+-.+.+..++..|- ....+..
T Consensus 156 ~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~---~iP~~sl~~~i~vLCsi~~~~~l~ 232 (464)
T PF11864_consen 156 QFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYG---DIPSESLSPCIEVLCSIVNSVSLC 232 (464)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcC---cCChHHHHHHHHHHhhHhcccccc
Confidence 45566665554333321112455555533344445555577888887775421 122334455555553 2233667
Q ss_pred HHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc------cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC--cHH
Q 000286 157 RVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ------YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG--LVT 228 (1720)
Q Consensus 157 r~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~------~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~g--ll~ 228 (1720)
..+..++.|+|+..- -..++-.|+.+|. ..+..++..|+..|..+.-+. .......+--.- +++
T Consensus 233 ~~~w~~m~nL~~S~~------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~--~~~~~~~l~~~~~~vl~ 304 (464)
T PF11864_consen 233 KPSWRTMRNLLKSHL------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS--GEQGYPSLPFSPSSVLP 304 (464)
T ss_pred hhHHHHHHHHHcCcc------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc--ccCCcceecccHHHHHH
Confidence 778889999998432 2345677777772 345778888999988888762 122222222222 678
Q ss_pred HHHHhhcCC
Q 000286 229 QAATLISTS 237 (1720)
Q Consensus 229 ~Lv~LL~~~ 237 (1720)
.+..-|...
T Consensus 305 sl~~al~~~ 313 (464)
T PF11864_consen 305 SLLNALKSN 313 (464)
T ss_pred HHHHHHhCC
Confidence 888888765
No 142
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=89.71 E-value=1.5 Score=48.04 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=92.9
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchh
Q 000286 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTAC 135 (1720)
Q Consensus 56 g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~I 135 (1720)
.+++.|+++|+.+.+..+..+|.|+|+.|-...| .+...+..+ .+. .-......+.....+ ....++. ..+..
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP-~~~k~~~~~-~~~---~~~~~~~~~~~~~~l-~~~~~~~-~~ee~ 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDP-YKHKSIQKS-LDS---KSSENSNDESTDISL-PMMGISP-SSEEY 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc-HHHhccccc-CCc---cccccccccchhhHH-hhccCCC-chHHH
Confidence 3688899999988889999999999999977666 333222111 000 000000111111111 1111111 12233
Q ss_pred hhcCchhHHhhhhccCChHHH-HHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 136 LRAGALMAVLSYLDFFSTGVQ-RVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 136 l~~GgL~~LL~lLd~~~~~vq-r~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
.-..++..|+..|...+...+ ..++.++.+++.............++|.+.+.++..+....+...+-|+.|+.
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 444467778888876554433 35788889998876667788899999999999998877888888888877764
No 143
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=89.51 E-value=1.2 Score=44.39 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhc
Q 000286 156 QRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIS 235 (1720)
Q Consensus 156 qr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~ 235 (1720)
.+-++++|+.++...+..-......++|.+...+..+|.+|...||.+|.+|+..+ ..+.+. . =..+...|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~-~-f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILP-Y-FNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHH-H-HHHHHHHHHHHHc
Confidence 34578888888887666666778899999999999999999999999999999862 222222 1 1257778888887
Q ss_pred CC
Q 000286 236 TS 237 (1720)
Q Consensus 236 ~~ 237 (1720)
..
T Consensus 79 D~ 80 (97)
T PF12755_consen 79 DP 80 (97)
T ss_pred CC
Confidence 65
No 144
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=89.46 E-value=3.7 Score=49.55 Aligned_cols=175 Identities=14% Similarity=0.077 Sum_probs=115.5
Q ss_pred ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhH--
Q 000286 99 GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAAD-- 176 (1720)
Q Consensus 99 GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~-- 176 (1720)
+.+..|+..-+.+.+.++++.++.|||-.|--..+...+ .+..+++.+...+..++-.|+.++..+........+.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~--~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE--HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 455556656667889999999999999998765543332 2555666666668889999999999988733222211
Q ss_pred -------HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChh
Q 000286 177 -------FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTP 249 (1720)
Q Consensus 177 -------~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~ 249 (1720)
....++..|...|.+.+++++.-|+-++++|.-.-.-.+ ...++..|+-+--++.+. +..
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-------~~~vL~~Lll~yF~p~t~------~~~ 170 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-------PPKVLSRLLLLYFNPSTE------DNQ 170 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-------HHHHHHHHHHHHcCcccC------CcH
Confidence 234588889999999999999999999999775311111 133455555554443211 212
Q ss_pred HHHHHHH-HHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC
Q 000286 250 TYTGLIR-LLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 250 i~~~alr-~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1720)
-...+|. .+-..|..++.. |..+...+++++..+.....
T Consensus 171 ~LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 171 RLRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCcc
Confidence 2233332 344557666665 67777888999999887655
No 145
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=89.43 E-value=4.5 Score=49.41 Aligned_cols=157 Identities=24% Similarity=0.263 Sum_probs=113.7
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
..++.+.+.|.+. ++.++-.|+..|.+ +.....++.|+.+|..+.+..+...|+++|..+-...
T Consensus 74 ~av~~l~~~l~d~-~~~vr~~a~~aLg~------------~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--- 137 (335)
T COG1413 74 EAVPLLRELLSDE-DPRVRDAAADALGE------------LGDPEAVPPLVELLENDENEGVRAAAARALGKLGDER--- 137 (335)
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHc------------cCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh---
Confidence 3566666677665 78888888775532 3344679999999996557899999999999886422
Q ss_pred hhhhcccccHHHHHHHHhcCCc------------HHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHH
Q 000286 92 CAAVVHYGAVTCFVARLLTIEY------------MDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVA 159 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~------------~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~A 159 (1720)
++..|+ .++.... ..++.+++.+|+++-. .-.+..++.++.+....+++.|
T Consensus 138 --------a~~~l~-~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~--------~~~~~~l~~~l~~~~~~vr~~A 200 (335)
T COG1413 138 --------ALDPLL-EALQDEDSGSAAAALDAALLDVRAAAAEALGELGD--------PEAIPLLIELLEDEDADVRRAA 200 (335)
T ss_pred --------hhHHHH-HHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC--------hhhhHHHHHHHhCchHHHHHHH
Confidence 366666 4444433 2456667777766643 3356777888887777888888
Q ss_pred HHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 160 LSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 160 l~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
..++..+.... ..+.+.+...+...+..+...++.++.++-.
T Consensus 201 a~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 201 ASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence 88888877643 4567888888999999999999999888776
No 146
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=89.40 E-value=7.3 Score=52.38 Aligned_cols=261 Identities=13% Similarity=0.151 Sum_probs=154.7
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
+.++.|...++-. .+.....++.+|..++... +..........+..+++.|+.-.+ ..|.....||++|+......
T Consensus 306 s~i~~L~~~~~l~-r~~~v~~cl~~l~~~~~~~--~~~~~~~~~~~l~~i~~sm~~~~s-~~~i~~~~CL~~i~~~~~~~ 381 (699)
T KOG3665|consen 306 SSIQALTYYLNLK-RPSEVSRCLNELLDLLKSL--DSTREYDISECLKLIINSMNTFSS-SNQIQGSACLIHIVKHTKQR 381 (699)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHh--hhhhhhhHHHHHHHHHHHHHhcCC-hhhhhHHHHHHHHHHhhhhc
Confidence 3444454444443 5677778888888877753 111335556678888888875543 77777788898888765311
Q ss_pred hhhhcccccHHHHHHHHhcCC------cHHHHHH----------------------------------------------
Q 000286 92 CAAVVHYGAVTCFVARLLTIE------YMDLAEQ---------------------------------------------- 119 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~------~~dl~Eq---------------------------------------------- 119 (1720)
....-..-++..|++...... ...+.+.
T Consensus 382 l~~~~~~~~l~~LLn~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (699)
T KOG3665|consen 382 LSPLLVSLLLKVLLNLVEKLDTLDSNDELTLCNSIILLLSLLVSRRKLLSVLDHHEQDNIQQRLTVCLSISTACQVVSIT 461 (699)
T ss_pred cChHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHhhcchhHHHHHHHH
Confidence 111111122233321111000 0111110
Q ss_pred ------------------------HHH-----HHHHhhccCcc---hhhhcCchhHHhhhhc-cCChHHHHHHHHHHHHh
Q 000286 120 ------------------------SLQ-----ALKKISQEHPT---ACLRAGALMAVLSYLD-FFSTGVQRVALSTAANM 166 (1720)
Q Consensus 120 ------------------------al~-----aL~nIS~~~~~---~Il~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNl 166 (1720)
+.. +|.++..+.+. .+++.||+..++..+. |....+++.++..+.|+
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~ 541 (699)
T KOG3665|consen 462 KVNVGELGIVLTLLLRIKLRKIYWCDDVLEFTALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNL 541 (699)
T ss_pred HhccchhHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 111 23355555554 6899999999999998 55678999999999999
Q ss_pred ccCCCCchhHHHhCcHH--HHHHhhccCC-HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC-------------------
Q 000286 167 CKKLPSDAADFVMEAVP--LLTNLLQYHD-AKVLEHASVCLTRIAEAFASSPDKLDELCNH------------------- 224 (1720)
Q Consensus 167 c~~~~~~~~~~v~~~lP--~L~~LL~~~D-~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~------------------- 224 (1720)
+...+..........+. .+..++..-+ .+.--.|+..|+.|... .++........
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~siLa~ll~~---~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~ 618 (699)
T KOG3665|consen 542 AEVLELRELLMIFEFIDFSVFKVLLNKWDSIERSYNAASILALLLSD---SEKTTECVFRNSVNELLVEAISRWLTSEIR 618 (699)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhC---CCcCccccchHHHHHHHHHHhhccCcccee
Confidence 98654444333333322 4444554444 48888888888887763 11111111111
Q ss_pred ----CcHHH-HHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcC
Q 000286 225 ----GLVTQ-AATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSG 287 (1720)
Q Consensus 225 ----gll~~-Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~ 287 (1720)
..+.. +..++..+ ..+..+.-|++++.+++...++..+.+.+.|.++.+..+-..
T Consensus 619 ~~~~~~f~~~~~~il~~s--------~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (699)
T KOG3665|consen 619 VINDRSFFPRILRILRLS--------KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVL 678 (699)
T ss_pred ehhhhhcchhHHHHhccc--------CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchh
Confidence 11222 33444333 256688899999999999999988888889988887775543
No 147
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=89.24 E-value=0.67 Score=56.77 Aligned_cols=140 Identities=19% Similarity=0.170 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhhh--cccccHHHHHHHHhcC------CcHHHHHHHHHHHHHhhcc------Ccchh
Q 000286 70 NPDIMLLAARALTHLCDVLPSSCAAV--VHYGAVTCFVARLLTI------EYMDLAEQSLQALKKISQE------HPTAC 135 (1720)
Q Consensus 70 ~~eiq~~AaraLtNL~~~~p~~~~~v--V~~GaVp~Lv~kLL~~------~~~dl~Eqal~aL~nIS~~------~~~~I 135 (1720)
....|..|+|++.||.++.-..+..+ ...-++-.++.+++.. ....|...++.+|+|+++- .....
T Consensus 446 ~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e 525 (728)
T KOG4535|consen 446 SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAE 525 (728)
T ss_pred hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHH
Confidence 47889999999999987532222111 1112333444444433 2367888999999999762 11233
Q ss_pred hhcCchhHHhhhh-ccCChHHHHHHHHHHHHhccCC--CCchhHHHhCcHHHHHHhh-ccCCHHHHHHHHHHHHHHHh
Q 000286 136 LRAGALMAVLSYL-DFFSTGVQRVALSTAANMCKKL--PSDAADFVMEAVPLLTNLL-QYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 136 l~~GgL~~LL~lL-d~~~~~vqr~Al~aLsNlc~~~--~~~~~~~v~~~lP~L~~LL-~~~D~~V~e~A~~aLs~L~~ 209 (1720)
+..|.+..++.-. -.....+|=+|+.+++|+.++. +..+..-...++|+|..|+ ++.+-+|..+|..+|+--..
T Consensus 526 ~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 526 IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 4444444433322 2345678999999999999975 3444455667899999995 56789999999998876655
No 148
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.86 E-value=8.2 Score=51.11 Aligned_cols=187 Identities=18% Similarity=0.227 Sum_probs=127.8
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
.++++-+..+..+ .+-++-.|++.|++++..-... .-+...+++..+.+.|++++ +-+-+.|.+.++-+|+..|
T Consensus 727 e~~qeai~sl~d~-qvpik~~gL~~l~~l~e~r~~~--~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcevy~-- 800 (982)
T KOG4653|consen 727 EPLQEAISSLHDD-QVPIKGYGLQMLRHLIEKRKKA--TLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEVYP-- 800 (982)
T ss_pred HHHHHHHHHhcCC-cccchHHHHHHHHHHHHhcchh--hhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHhcc--
Confidence 3466666667665 6788999999999999854322 23667789999999999874 8888899999988988655
Q ss_pred hhhhcccccHHHHHHHHhcCCc---HHHHHHHHHHHHHhhccCcchhhh--cCchhHHhhhhccCChHHHHHHHHHHHHh
Q 000286 92 CAAVVHYGAVTCFVARLLTIEY---MDLAEQSLQALKKISQEHPTACLR--AGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~---~dl~Eqal~aL~nIS~~~~~~Il~--~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1720)
..++|-|.+.-.+... .|.+--+=.|+.++.+..+..+.. +-.+..++.-++..+....-.++.++.+|
T Consensus 801 ------e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~L 874 (982)
T KOG4653|consen 801 ------EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQL 874 (982)
T ss_pred ------hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHH
Confidence 3477777753433322 233334446777777776664443 23345566666755555566789999999
Q ss_pred ccCCCCchhHHHhCcHHHHHHhhccCC-HHHHHHHHHHHHHHHhh
Q 000286 167 CKKLPSDAADFVMEAVPLLTNLLQYHD-AKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 167 c~~~~~~~~~~v~~~lP~L~~LL~~~D-~~V~e~A~~aLs~L~~~ 210 (1720)
|.-....-...+.+++-.+..+.+.++ .-+...|...+..+-.|
T Consensus 875 cq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 875 CQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 984432222356777777888877655 56667777777777776
No 149
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.60 E-value=13 Score=50.94 Aligned_cols=190 Identities=16% Similarity=0.159 Sum_probs=120.7
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhc---CCcHHHHHHHHHHHHHhhccCcc---hhh
Q 000286 63 GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLT---IEYMDLAEQSLQALKKISQEHPT---ACL 136 (1720)
Q Consensus 63 ~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~---~~~~dl~Eqal~aL~nIS~~~~~---~Il 136 (1720)
....+..+..+|.-|-+.|.-++.. + .....+.. -|..+.+.|+. ....-.+.-.+.||..|-..++. ..+
T Consensus 660 ~~~e~~~~~~vQkK~yrlL~~l~~~-~-s~~~~~~q-~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 660 PEFENSSSTKVQKKAYRLLEELSSS-P-SGEGLVEQ-RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HHhhccccHHHHHHHHHHHHHHhcC-C-chhhHHHH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3333444689999999999999987 3 22222221 22233323322 33445566677888877766663 223
Q ss_pred hcCchhHHhhhhccCChHHHHHHHHHHHHhcc--C----CCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 137 RAGALMAVLSYLDFFSTGVQRVALSTAANMCK--K----LPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 137 ~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~--~----~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
.......+|.+ ..++....++|..+|.++|. . ...+....+.+.++.|...+-.+...++...+.++..|...
T Consensus 737 ~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 737 PKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 33334444444 88899999999999999992 1 11223567888888888887666666665558888888875
Q ss_pred cCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHH
Q 000286 211 FASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLC 268 (1720)
Q Consensus 211 ~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~ 268 (1720)
| .+.+..-.-.+++..++-.|... +..+...|++.+..++..-|+.
T Consensus 816 ~---~~~ld~~~l~~li~~V~~~L~s~---------sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 816 F---KNILDDETLEKLISMVCLYLASN---------SREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred H---hccccHHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHcCCHH
Confidence 3 22222222234556666666654 7889999999999998886665
No 150
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=88.13 E-value=4.3 Score=53.93 Aligned_cols=210 Identities=16% Similarity=0.122 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhh------------
Q 000286 27 EGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAA------------ 94 (1720)
Q Consensus 27 ~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~------------ 94 (1720)
..+.+..+..+.+-|.|-+.+. ...+...|+.+|++ |++.-.|+.++.-++..++.....
T Consensus 791 s~~al~~l~Wv~KaLl~R~~~~-----s~~ia~klld~Ls~---~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQ 862 (1030)
T KOG1967|consen 791 SEIALTVLAWVTKALLLRNHPE-----SSEIAEKLLDLLSG---PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQ 862 (1030)
T ss_pred hhHHHHHHHHHHHHHHHcCCcc-----cchHHHHHHHhcCC---ccccchHHHhhHhhhccChHHhhhccccchhHHHHH
Confidence 3556666777777777765432 23457788888874 567777888887777655432211
Q ss_pred hcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhh---cCchhHHhhhhccCChHHHHHHHHHHHHhccCCC
Q 000286 95 VVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLR---AGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP 171 (1720)
Q Consensus 95 vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~---~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~ 171 (1720)
=.-..+||.|+ ..........+-.=+.+|.++-.+-|..++- .-.++.||+-|+-.+..+|-.++.++.-+....+
T Consensus 863 RfF~~ivP~l~-~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 863 RFFCDIVPILV-SKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHhhHHHHH-HHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 01246899999 5555777788888889999998888875443 3467888899999999999999999998888766
Q ss_pred CchhHHHhCcHHHHHHhhccCC---HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCCh
Q 000286 172 SDAADFVMEAVPLLTNLLQYHD---AKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLST 248 (1720)
Q Consensus 172 ~~~~~~v~~~lP~L~~LL~~~D---~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~ 248 (1720)
.-.-.++.-++|.|..+=...| .-|.+.|+.|+.-|+.. -|...-.-....++..|+..|.+. ..
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~---~P~~~l~~fr~~Vl~al~k~LdDk---------KR 1009 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRR---LPTKSLLSFRPLVLRALIKILDDK---------KR 1009 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhcc---CCCcccccccHHHHHHhhhccCcH---------HH
Confidence 6666788899999999965555 67889999999999984 333333333445788888888765 24
Q ss_pred hHHHHHHHH
Q 000286 249 PTYTGLIRL 257 (1720)
Q Consensus 249 ~i~~~alr~ 257 (1720)
-+++.|+++
T Consensus 1010 lVR~eAv~t 1018 (1030)
T KOG1967|consen 1010 LVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHH
Confidence 466666654
No 151
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=88.06 E-value=9.1 Score=47.66 Aligned_cols=187 Identities=17% Similarity=0.274 Sum_probs=119.5
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
..-+..+++++...+..+.+.+|+.+|=++++.+..-.+..+ -..++-.++++|.+..+.-+...|.|.|.-|+...|
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~-f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~- 362 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQH-FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP- 362 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHH-HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch-
Confidence 345667777776655668888999999888887543333211 234677888999875568899999999999998544
Q ss_pred chhhhcccccHHHHHHHHhcCC----c--HHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHH
Q 000286 91 SCAAVVHYGAVTCFVARLLTIE----Y--MDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAA 164 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~----~--~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLs 164 (1720)
..+.+ -+--++| |+|+.. + ..++|++ |+.-++...|-..+.. +.+++.- -+...---++.++.
T Consensus 363 --~~l~D-stE~ai~-K~Leaa~ds~~~v~~~Aeed--~~~~las~~P~~~I~~--i~~~Ilt---~D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 363 --ARLFD-STEIAIC-KVLEAAKDSQDEVMRVAEED--CLTTLASHLPLQCIVN--ISPLILT---ADEPRAVAVIKMLT 431 (516)
T ss_pred --Hhhhc-hHHHHHH-HHHHHHhCCchhHHHHHHHH--HHHHHHhhCchhHHHH--HhhHHhc---CcchHHHHHHHHHH
Confidence 33443 2223344 665543 2 2333333 3444455555432221 2222221 22222233555677
Q ss_pred HhccCCCCchhH-HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 165 NMCKKLPSDAAD-FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 165 Nlc~~~~~~~~~-~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
.+|...+..... .+.+++|.++.--++....|...|..||..|+..
T Consensus 432 kl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 432 KLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 788776655543 4678999999999999999999999999999874
No 152
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=87.81 E-value=5.3 Score=43.42 Aligned_cols=128 Identities=12% Similarity=0.156 Sum_probs=95.7
Q ss_pred hhhhcccccHHHHHHHHhcCCc------HHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhccC--ChHHHHHHHH
Q 000286 92 CAAVVHYGAVTCFVARLLTIEY------MDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFF--STGVQRVALS 161 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~------~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~--~~~vqr~Al~ 161 (1720)
+..+++.|++..|+ ++++... .++...++.|+-.+-.+..- .++...-+..++.|+... +..+++.|+.
T Consensus 4 A~EFI~~~Gl~~L~-~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLI-KMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHH-HHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 45677889999999 7776644 36777788888887654332 578888899999999854 5899999999
Q ss_pred HHHHhccCCCCchhHHHhC-cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000286 162 TAANMCKKLPSDAADFVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1720)
Q Consensus 162 aLsNlc~~~~~~~~~~v~~-~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li 222 (1720)
++-+++-+.+.-...+.++ -++.|...|+..|++++.+|...+-.|--. .+++..+.+.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k--A~~~~r~~i~ 142 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK--ADDSKRKEIA 142 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--CChHHHHHHH
Confidence 9999998655433333333 589999999999999999999888777765 2445554443
No 153
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.72 E-value=14 Score=47.84 Aligned_cols=238 Identities=17% Similarity=0.110 Sum_probs=137.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCH-HHHHHHHHHHHHhhccCCcchhhh
Q 000286 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNP-DIMLLAARALTHLCDVLPSSCAAV 95 (1720)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~-eiq~~AaraLtNL~~~~p~~~~~v 95 (1720)
+.+.|.+. |+..+.-||..+.++=..+.-+ .+-+-+-++|-++++. -++..||-||..|...+|+...
T Consensus 116 iknDL~sr-n~~fv~LAL~~I~niG~re~~e--------a~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~-- 184 (938)
T KOG1077|consen 116 IKNDLSSR-NPTFVCLALHCIANIGSREMAE--------AFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN-- 184 (938)
T ss_pred HHhhhhcC-CcHHHHHHHHHHHhhccHhHHH--------HhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC--
Confidence 34446666 8888999999887765543222 2233334677666554 4566899999999988775432
Q ss_pred cccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHH---------------hhhhcc--CChHHHHH
Q 000286 96 VHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAV---------------LSYLDF--FSTGVQRV 158 (1720)
Q Consensus 96 V~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~L---------------L~lLd~--~~~~vqr~ 158 (1720)
-.+-+..++ .||.-.+..|.-.+...++-|+...++.- .++++.. ..|... ..+=.|.+
T Consensus 185 -~~~W~~riv-~LL~D~~~gv~ta~~sLi~~lvk~~p~~y--k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 185 -PGEWAQRIV-HLLDDQHMGVVTAATSLIEALVKKNPESY--KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred -hhhHHHHHH-HHhCccccceeeehHHHHHHHHHcCCHHH--hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 225677788 88888888888888888999988766420 0111111 112211 24456777
Q ss_pred HHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCC-----HHHH----HHHH-HHHHHHHhhcCCCHHHHHHHHhCCcHH
Q 000286 159 ALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHD-----AKVL----EHAS-VCLTRIAEAFASSPDKLDELCNHGLVT 228 (1720)
Q Consensus 159 Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D-----~~V~----e~A~-~aLs~L~~~~~~~~~~~~~li~~gll~ 228 (1720)
++.++.++=. +.+.......+..|-.+|+..+ ++|. .+|. .-..+++..+..+++.+.. .+.
T Consensus 261 l~rlLq~~p~---~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~-----~~~ 332 (938)
T KOG1077|consen 261 LLRLLQIYPT---PEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR-----AVN 332 (938)
T ss_pred HHHHHHhCCC---CCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH-----HHH
Confidence 7777777622 2222223334444444444322 2222 2222 1122333322223333332 467
Q ss_pred HHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCC
Q 000286 229 QAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 229 ~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1720)
+|.++|.+.+ .+++--++..++.||+... ++..++.. .+.+...|..+.
T Consensus 333 ~Lg~fls~rE---------~NiRYLaLEsm~~L~ss~~--s~davK~h-~d~Ii~sLkter 381 (938)
T KOG1077|consen 333 QLGQFLSHRE---------TNIRYLALESMCKLASSEF--SIDAVKKH-QDTIINSLKTER 381 (938)
T ss_pred HHHHHhhccc---------ccchhhhHHHHHHHHhccc--hHHHHHHH-HHHHHHHhcccc
Confidence 8889998874 4588888888888888733 33344433 667777776443
No 154
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=87.66 E-value=1.4 Score=44.24 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhccCCCCc-hhHHHhCcHHHHHHhhc--cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC
Q 000286 155 VQRVALSTAANMCKKLPSD-AADFVMEAVPLLTNLLQ--YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH 224 (1720)
Q Consensus 155 vqr~Al~aLsNlc~~~~~~-~~~~v~~~lP~L~~LL~--~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~ 224 (1720)
+.+..+.+|+|+|-+.+.. +.....+.+|.|.+... ..++-+.+-|.||+-+|+++ ++++.+.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~---n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG---NPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC---CHHHHHHHHhc
Confidence 3577899999999865433 44444578999988844 45699999999999999997 77777666543
No 155
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=87.64 E-value=4.3 Score=44.10 Aligned_cols=122 Identities=14% Similarity=0.154 Sum_probs=94.0
Q ss_pred cccccCcHHHHHHhhcCCCC-----HHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCC--cHHHHHHHHHH
Q 000286 51 TFSVDSFAPVLVGLLNHESN-----PDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIE--YMDLAEQSLQA 123 (1720)
Q Consensus 51 ~~~~~g~Vp~LV~lL~~~~~-----~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~--~~dl~Eqal~a 123 (1720)
.|+..+.+..|++++.++.. .++...+..|+..+++..--++. .++.-.|...+ ...... +..+.+.|+..
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia-~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIA-SYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHH-HHHccccccchHHHHHHHH
Confidence 57888889999999987653 46777888899999987543443 45555566666 333333 58899999999
Q ss_pred HHHhhccCcc---hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCch
Q 000286 124 LKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA 174 (1720)
Q Consensus 124 L~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~ 174 (1720)
|+++...++. .|-+.=-++.|+..|...+..+|.+|+..+--+..+.+...
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 9999887775 46666678999999999999999999999988888765544
No 156
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=87.38 E-value=12 Score=41.58 Aligned_cols=110 Identities=22% Similarity=0.214 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCch-hHHhhhh
Q 000286 70 NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGAL-MAVLSYL 148 (1720)
Q Consensus 70 ~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL-~~LL~lL 148 (1720)
++.++..+..+|+-|+.--| .+++ ..+|.+. ..|..+++.++.+|+.+|..+.... .+--.|-+ ..++..|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve-~~~~~l~-~~L~D~~~~VR~~al~~Ls~Li~~d--~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVE-PYLPNLY-KCLRDEDPLVRKTALLVLSHLILED--MIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHH-hHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcC--ceeehhhhhHHHHHHH
Confidence 47888899999999987655 3333 4578888 8899999999999999999997643 33333444 7778888
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc
Q 000286 149 DFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ 190 (1720)
Q Consensus 149 d~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~ 190 (1720)
...+..++..|..++..+.....+.. +...+|-+...|+
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~---i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNI---IYNNFPELISSLN 111 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchH---HHHHHHHHHHHHh
Confidence 88899999999999999988642222 3444444444444
No 157
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=87.33 E-value=10 Score=45.06 Aligned_cols=254 Identities=14% Similarity=0.108 Sum_probs=126.7
Q ss_pred HHHHHHHhccCCCCchhHHHhC-cHHHHHHhhcc--CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC-CcHHHHHHhh
Q 000286 159 ALSTAANMCKKLPSDAADFVME-AVPLLTNLLQY--HDAKVLEHASVCLTRIAEAFASSPDKLDELCNH-GLVTQAATLI 234 (1720)
Q Consensus 159 Al~aLsNlc~~~~~~~~~~v~~-~lP~L~~LL~~--~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~-gll~~Lv~LL 234 (1720)
|+.|+.|+....+.....-.++ +--.++.++++ .+..++-+.+.|+--++- +++..+.+-.. +++.-|++++
T Consensus 169 av~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf----~~~~aqdi~K~~dli~dli~iV 244 (432)
T COG5231 169 AVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF----SKECAQDIDKMDDLINDLIAIV 244 (432)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554333333322222 22334444433 367788888888877775 44444332222 5778888888
Q ss_pred cCCCCCCCCCCCChhHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHH
Q 000286 235 STSNSGGGQASLSTPTYTGLIRLLSTCASGS--PLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVN 312 (1720)
Q Consensus 235 ~~~~~~~~~~~ls~~i~~~alr~L~nLas~s--~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~ 312 (1720)
... ....+..-|+.++.|+|..+ ..+.+.++..++.++...|+.+ .|+- +.+..-|+
T Consensus 245 k~~--------~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~er-----kysD--------Eel~~di~ 303 (432)
T COG5231 245 KER--------AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLER-----KYSD--------EELVIDIE 303 (432)
T ss_pred HHH--------HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhc-----CCCh--------HHHHHHHH
Confidence 654 14556777788888888855 3444666667788887777653 2211 11111111
Q ss_pred HhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHh
Q 000286 313 LANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYG 392 (1720)
Q Consensus 313 li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ 392 (1720)
.|...|-.-.....+.+.|...+..|-+.+.++. ...+- ...+.. .+.+++ -.|+..|++..+
T Consensus 304 ~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H----~~~dF---Ws~N~d--~l~kdn--------y~i~k~L~~~lq 366 (432)
T COG5231 304 RIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYH----HKKDF---WSTNLD--MLIKDN--------YEIVKVLKKYLQ 366 (432)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcc----cccCc---hhhhHH--HHhhhh--------HHHHHHHHHHHh
Confidence 1111111100000000011111122333332220 00000 000011 111222 156777778877
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhccchHHHHHHHhhcCCCchHHhHHHHHHHHHh
Q 000286 393 SSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILME 456 (1720)
Q Consensus 393 ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~~~iss~la~il~~~d~~lv~~aL~i~~~Ll~ 456 (1720)
+.+.-..=.-++.-|.-.|-. .|+. .+++.....-.-|..++++.|+.+-..|||....+|.
T Consensus 367 ~n~~nt~i~vAc~Di~~~Vr~-~PE~-~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 367 SNNPNTWICVACSDIFQLVRA-SPEI-NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred cCCCCceEeeeHhhHHHHHHh-CchH-HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 776541111222223323322 3343 4566666777888999999999999999999998874
No 158
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=86.83 E-value=23 Score=41.32 Aligned_cols=204 Identities=19% Similarity=0.148 Sum_probs=120.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhh
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL 136 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il 136 (1720)
++|.|+.-+....+++++.....+|..++......... ++..|. .|......++.--++..+..+-...+...
T Consensus 1 ll~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~-~L~~~~~~~~~~~~~rLl~~lw~~~~r~f- 73 (234)
T PF12530_consen 1 LLPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLV-SLVEQGSLELRYVALRLLTLLWKANDRHF- 73 (234)
T ss_pred ChHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHH-HHHcCCchhHHHHHHHHHHHHHHhCchHH-
Confidence 35667776666778999999999999998765222222 334455 66666666665556666666655444322
Q ss_pred hcCchhHHhhhhc----------cCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhh-ccCCHHHHHHHHHHHH
Q 000286 137 RAGALMAVLSYLD----------FFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL-QYHDAKVLEHASVCLT 205 (1720)
Q Consensus 137 ~~GgL~~LL~lLd----------~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL-~~~D~~V~e~A~~aLs 205 (1720)
+.|..++..++ ....+.+....+++..+|...|. .-.++++.|..+| ++.++.+...++.++.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 44555555411 11233444557788999987665 5677899999999 7888889999999999
Q ss_pred HHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHh
Q 000286 206 RIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS-PLCAKTLLHLGISGILKDI 284 (1720)
Q Consensus 206 ~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s-~~~t~~Ll~~gil~~L~~L 284 (1720)
.+|.. .--.+. ..-..+..-|+... .+.+.....+.++.+..+. +......+...++..+-++
T Consensus 148 ~Lc~~---~vvd~~-----s~w~vl~~~l~~~~--------rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~ 211 (234)
T PF12530_consen 148 PLCEA---EVVDFY-----SAWKVLQKKLSLDY--------RPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEY 211 (234)
T ss_pred HHHHH---hhccHH-----HHHHHHHHhcCCcc--------chHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhh
Confidence 99964 111111 12223333333321 3444444444444444443 2222334555666666666
Q ss_pred hcCCC
Q 000286 285 LSGSG 289 (1720)
Q Consensus 285 L~~~~ 289 (1720)
.....
T Consensus 212 ~~~~~ 216 (234)
T PF12530_consen 212 TSSSD 216 (234)
T ss_pred ccccc
Confidence 55444
No 159
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.22 E-value=29 Score=43.12 Aligned_cols=276 Identities=15% Similarity=0.185 Sum_probs=165.7
Q ss_pred CCHHHHHHHHHHHHHHHhc----CCCccc-ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC--C-------c
Q 000286 25 GEEGKQVEALTQLCEMLSI----GTEESL-STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVL--P-------S 90 (1720)
Q Consensus 25 ~D~~~ql~Al~~L~~lL~~----~~~~~l-~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~--p-------~ 90 (1720)
++|+.-+++=..|-.++.. .+-|-+ ..+..-..|+.|+.+|.++ |.+|-....-.|--+.+.. + .
T Consensus 89 dnPeKFmeSE~dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAev 167 (536)
T KOG2734|consen 89 DNPEKFMESEVDLHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEV 167 (536)
T ss_pred CCHHHHHHhhccHHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHH
Confidence 4787777765444333322 223333 3577888999999999987 6898888777777777532 1 2
Q ss_pred chhhhcccccHHHHHHHHhcCC-----cHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhc---cCChHHHHHH
Q 000286 91 SCAAVVHYGAVTCFVARLLTIE-----YMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLD---FFSTGVQRVA 159 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~-----~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd---~~~~~vqr~A 159 (1720)
-+.++|+.++|+.|++.+-.-+ ..+=...++..++|+..-.+. .+++.|-+.-||.-+. .|+.. ...|
T Consensus 168 LidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aN-k~Ya 246 (536)
T KOG2734|consen 168 LIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDAN-KQYA 246 (536)
T ss_pred HHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchh-HHHH
Confidence 3456889999999985442221 133355678888888765553 5777777777776443 23333 3345
Q ss_pred HHHHHHhccCCC-CchhHHHhCcHHHHHHhh----cc-----CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHH
Q 000286 160 LSTAANMCKKLP-SDAADFVMEAVPLLTNLL----QY-----HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQ 229 (1720)
Q Consensus 160 l~aLsNlc~~~~-~~~~~~v~~~lP~L~~LL----~~-----~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~ 229 (1720)
.-+++=+..+.. ......--+.+..|..-| .+ +..+..++...||+.+.. .+++.+.++..+.+.-
T Consensus 247 sEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm----~~~nr~~Fl~~EGlqL 322 (536)
T KOG2734|consen 247 SEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM----APANRERFLKGEGLQL 322 (536)
T ss_pred HHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc----ChhhhhhhhccccHHH
Confidence 555554444322 111111122333333222 12 146788888889888887 7888888888876655
Q ss_pred HHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCH--HHHHHHHHcCChHHHHHhhcCCCc-ccccccccccCCCHHH
Q 000286 230 AATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSP--LCAKTLLHLGISGILKDILSGSGV-SANSAVPPALSRPAEQ 306 (1720)
Q Consensus 230 Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~--~~t~~Ll~~gil~~L~~LL~~~~~-~~~~~~s~i~~~~~~q 306 (1720)
..-++... .-....++++|-.+..|.+ .....+++...+.++..++...+. ...... -..++
T Consensus 323 m~Lmlr~K----------k~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~-----t~~e~ 387 (536)
T KOG2734|consen 323 MNLMLREK----------KVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKI-----SADEH 387 (536)
T ss_pred HHHHHHHH----------HHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccC-----cHHHH
Confidence 55555443 2356678899988888876 667778887777777777663221 111111 12344
Q ss_pred HHHHHHHhhccCCCC
Q 000286 307 IFEIVNLANELLPPL 321 (1720)
Q Consensus 307 i~~vi~li~~LLP~L 321 (1720)
...++..|+.++-.+
T Consensus 388 eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 388 EEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHHHHHHHHhc
Confidence 444555556666654
No 160
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=85.86 E-value=18 Score=43.69 Aligned_cols=168 Identities=17% Similarity=0.196 Sum_probs=105.4
Q ss_pred CcHHHHH-HhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch
Q 000286 56 SFAPVLV-GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA 134 (1720)
Q Consensus 56 g~Vp~LV-~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~ 134 (1720)
+++..|| -.+++. ++.++..|.+||+-.+-.+.+.+.. .++.|. +.+......++..|+.+|..|..-++..
T Consensus 26 ~ll~~lI~P~v~~~-~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~-~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSS-DPAVRELALKCLGLCCLLDKELAKE-----HLPLFL-QALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 5566655 455555 5899999999999998766533332 466777 4457779999999999999998766643
Q ss_pred hh-----------hcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhcc----CCHHHHHH
Q 000286 135 CL-----------RAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQY----HDAKVLEH 199 (1720)
Q Consensus 135 Il-----------~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~----~D~~V~e~ 199 (1720)
++ ....+..+..+|+..+.++|-.|+-.++.+.-.....+ ...++..|+-+.-+ ++.++..
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ- 174 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQ- 174 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHH-
Confidence 22 23456677777888888999999999998776433222 12234444333222 2344443
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCC
Q 000286 200 ASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1720)
Q Consensus 200 A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~ 237 (1720)
||+..-..|......-|..+....++.+..+....
T Consensus 175 ---~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 175 ---CLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 33333333333344345555555677777766554
No 161
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=85.84 E-value=3.6 Score=38.87 Aligned_cols=67 Identities=21% Similarity=0.167 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 000286 197 LEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLG 276 (1720)
Q Consensus 197 ~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~g 276 (1720)
++.|+||+.+|+. .+.-++.+-+.++++.++++....+ ...++-.|+.+|+-|++. .+-.+.|-+.|
T Consensus 4 lKaaLWaighIgs----s~~G~~lL~~~~iv~~iv~~a~~s~--------v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS----SPLGIQLLDESDIVEDIVKIAENSP--------VLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc----ChHHHHHHhhcCHHHHHHHHHHhCC--------ccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 5789999999998 7888888888999999999998764 456888999999988865 33334444444
No 162
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.81 E-value=1.1 Score=34.74 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=26.1
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDV 87 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~ 87 (1720)
++|.|+++|+++ +++++..|++||..|++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence 489999999987 599999999999999864
No 163
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=85.80 E-value=17 Score=45.43 Aligned_cols=193 Identities=15% Similarity=0.143 Sum_probs=123.8
Q ss_pred HHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHH---HhhccCcchhhhcCchhHHh--hhhcc
Q 000286 76 LAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALK---KISQEHPTACLRAGALMAVL--SYLDF 150 (1720)
Q Consensus 76 ~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~---nIS~~~~~~Il~~GgL~~LL--~lLd~ 150 (1720)
.|.+.|-.+....+.....+.+.+++..|+++| .. .+-.+++ +....... ...-....+ ..+.+
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl-~~-------Ev~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~ 71 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRL-QY-------EVDFALEENKNEEAGSGI---PPEYKESSVDGYSISY 71 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHH-HH-------HHHHHHhcccccCCCCCC---CCCcccccccccccCH
Confidence 467788888888888888899999999999444 22 2233333 22111110 000000000 11222
Q ss_pred CChHHHHHHHHHHHHhcc-CCC-CchhH-HH--hCcHHHHHHhhccCC---HHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000286 151 FSTGVQRVALSTAANMCK-KLP-SDAAD-FV--MEAVPLLTNLLQYHD---AKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1720)
Q Consensus 151 ~~~~vqr~Al~aLsNlc~-~~~-~~~~~-~v--~~~lP~L~~LL~~~D---~~V~e~A~~aLs~L~~~~~~~~~~~~~li 222 (1720)
......|..+.++..++. ... ..... .+ ...+..|..++.+.. ..|...|+..++.++.. +|.....+.
T Consensus 72 ~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~n---ePT~~~~l~ 148 (379)
T PF06025_consen 72 QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHN---EPTSFSILQ 148 (379)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhc---CCchhHHHH
Confidence 233445555666666665 221 11111 12 235667777788775 78999999999999986 999999999
Q ss_pred hCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000286 223 NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1720)
Q Consensus 223 ~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1720)
++|+++.+++-+.... ..-+.++...+-.+|+.||=.+.. .+.+.+.+.++.+..++.+.
T Consensus 149 e~Gl~~~~L~~i~~~~-----i~~s~e~l~~lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 149 EAGLIDAFLDAITAKG-----ILPSSEVLTSLPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HcCChHHHHHHHhccC-----CCCcHHHHHHHHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCH
Confidence 9999999999997221 112567777777888888876555 46788899999999998753
No 164
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=85.57 E-value=2.9 Score=41.37 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=66.8
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
..+++.+..|++. .+-++-.|+..|++++...+ ........++..+...|++++ +-+=+.|..+|+.|+...|+.
T Consensus 3 ~~~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 3 ETLQEALSDLNDP-LPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHHHccCC-CcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChHH
Confidence 4678899999876 88999999999999999876 122445667888888888874 889999999999999877742
Q ss_pred hhhhcccccHHHHHHHH
Q 000286 92 CAAVVHYGAVTCFVARL 108 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kL 108 (1720)
++|.|++..
T Consensus 78 --------vl~~L~~~y 86 (92)
T PF10363_consen 78 --------VLPILLDEY 86 (92)
T ss_pred --------HHHHHHHHH
Confidence 677777443
No 165
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=85.56 E-value=1.5 Score=44.18 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhccCCcchhhhcccccHHHHHHHH-hcCCcHHHHHHHHHHHHHhhccCcc
Q 000286 74 MLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARL-LTIEYMDLAEQSLQALKKISQEHPT 133 (1720)
Q Consensus 74 q~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kL-L~~~~~dl~Eqal~aL~nIS~~~~~ 133 (1720)
+....++|+|++-.++.....|.+.|.||.+++.. .+-.++-++|.|+||+.|++..++.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 45678899999999998888999999999998543 2234588999999999999987774
No 166
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=85.52 E-value=12 Score=44.47 Aligned_cols=232 Identities=12% Similarity=0.079 Sum_probs=140.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccCCcchhh
Q 000286 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVLPSSCAA 94 (1720)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~-~~eiq~~AaraLtNL~~~~p~~~~~ 94 (1720)
+++.+|-+.=|+-.++-|++.|.+++..-.-+.+ .......-.+++++|+..- ..++|....-|+.-+. .+++.++.
T Consensus 152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i-~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lT-f~~~~aqd 229 (432)
T COG5231 152 EYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKI-EWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILT-FSKECAQD 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh-cCHHHHHH
Confidence 3344442222677888888888887765322221 2224457788999997532 3678877766655443 34445432
Q ss_pred hcc-cccHHHHHHHHhcCC-cHHHHHHHHHHHHHhhccCcc----hhhhcCchhHHhhhhccC---ChHHHHH---H---
Q 000286 95 VVH-YGAVTCFVARLLTIE-YMDLAEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDFF---STGVQRV---A--- 159 (1720)
Q Consensus 95 vV~-~GaVp~Lv~kLL~~~-~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~~---~~~vqr~---A--- 159 (1720)
|-. -..|.-|+ ++..+. ...+-.-|+..+.|++...|+ ..+-.|.+.++++.|... +.++... .
T Consensus 230 i~K~~dli~dli-~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~ 308 (432)
T COG5231 230 IDKMDDLINDLI-AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSR 308 (432)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 221 12344444 333332 345666778888888876664 344566677788877421 1111111 1
Q ss_pred -------HHHH----HH-----hccCCCCch-------hH-HHh---CcHHHHHHhhccCCHH-HHHHHHHHHHHHHhhc
Q 000286 160 -------LSTA----AN-----MCKKLPSDA-------AD-FVM---EAVPLLTNLLQYHDAK-VLEHASVCLTRIAEAF 211 (1720)
Q Consensus 160 -------l~aL----sN-----lc~~~~~~~-------~~-~v~---~~lP~L~~LL~~~D~~-V~e~A~~aLs~L~~~~ 211 (1720)
+.+. +. +|-..++.+ .. .++ .++-.|..+|++..+. .+.-||.-+..++..
T Consensus 309 l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~- 387 (432)
T COG5231 309 LVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRA- 387 (432)
T ss_pred HHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHh-
Confidence 1111 11 222111111 11 122 3677888889988766 677788889999986
Q ss_pred CCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHh
Q 000286 212 ASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 262 (1720)
Q Consensus 212 ~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLa 262 (1720)
.|+....+...|+=..+++||.|+ ++.+.-.|+.++-.+.
T Consensus 388 --~PE~~~vl~Kyg~k~~im~L~nh~---------d~~VkfeAl~a~q~~i 427 (432)
T COG5231 388 --SPEINAVLSKYGVKEIIMNLINHD---------DDDVKFEALQALQTCI 427 (432)
T ss_pred --CchHHHHHHHhhhHHHHHHHhcCC---------CchhhHHHHHHHHHHH
Confidence 899999999999999999999998 4678889998876654
No 167
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.08 E-value=3.4 Score=52.97 Aligned_cols=143 Identities=20% Similarity=0.207 Sum_probs=104.8
Q ss_pred cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Q 000286 51 TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1720)
Q Consensus 51 ~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1720)
.++..|..-+||.=|.++- .|+...|+..++.++...|..... ++..|+ .++.-+..+|+.+|+.+|..|+.+
T Consensus 368 siI~sGACGA~VhGlEDEf-~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLv-DMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 368 SIIPSGACGALVHGLEDEF-YEVRRAAVASLCSLATSSPGFAVR-----ALDFLV-DMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred ccccccccceeeeechHHH-HHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHH-HHhccHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999998774 899999999999999988866554 556888 888889999999999999999976
Q ss_pred CcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc-c-CCHHHHHHHHHHHHHHH
Q 000286 131 HPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ-Y-HDAKVLEHASVCLTRIA 208 (1720)
Q Consensus 131 ~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~-~-~D~~V~e~A~~aLs~L~ 208 (1720)
..++..-++.++.-|+..+..+...+--.|. +|+ ..+...+.-++..|...|. + +|. ...+.|+.+|.
T Consensus 441 ---l~i~eeql~~il~~L~D~s~dvRe~l~elL~-~~~---~~d~~~i~m~v~~lL~~L~kyPqDr---d~i~~cm~~iG 510 (823)
T KOG2259|consen 441 ---LAIREEQLRQILESLEDRSVDVREALRELLK-NAR---VSDLECIDMCVAHLLKNLGKYPQDR---DEILRCMGRIG 510 (823)
T ss_pred ---heecHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcC---CCcHHHHHHHHHHHHHHhhhCCCCc---HHHHHHHHHHh
Confidence 5677778888998888777776554443333 333 2334444444444444432 2 232 34567888888
Q ss_pred hh
Q 000286 209 EA 210 (1720)
Q Consensus 209 ~~ 210 (1720)
.+
T Consensus 511 qn 512 (823)
T KOG2259|consen 511 QN 512 (823)
T ss_pred cc
Confidence 85
No 168
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=84.93 E-value=2.4 Score=42.44 Aligned_cols=90 Identities=20% Similarity=0.134 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhccCcch--hhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHH
Q 000286 118 EQSLQALKKISQEHPTA--CLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAK 195 (1720)
Q Consensus 118 Eqal~aL~nIS~~~~~~--Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~ 195 (1720)
..++++|..++..-+.. -.-.-.+++++..++..+..+...|+-++.|+++.....-.....++++.|.+++...|+.
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN 83 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 45667777776554442 2223478899999999999999999999999998666666667889999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000286 196 VLEHASVCLTRIA 208 (1720)
Q Consensus 196 V~e~A~~aLs~L~ 208 (1720)
|...| ..|-++.
T Consensus 84 Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 84 VRSAA-ELLDRLL 95 (97)
T ss_pred HHHHH-HHHHHHh
Confidence 77655 5554443
No 169
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.87 E-value=1.8e+02 Score=41.70 Aligned_cols=172 Identities=16% Similarity=0.124 Sum_probs=102.8
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccc---cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc
Q 000286 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYG---AVTCFVARLLTIEYMDLAEQSLQALKKISQEHP 132 (1720)
Q Consensus 56 g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~G---aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~ 132 (1720)
.+||+|.+.=-++ ++.+| .|.--|.|..-.. ...+|+.- +..-|+ .=+.+..=.++|.++-||.-|-+.++
T Consensus 998 kLIPrLyRY~yDP-~~~Vq-~aM~sIW~~Li~D---~k~~vd~y~neIl~eLL-~~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDP-DKKVQ-DAMTSIWNALITD---SKKVVDEYLNEILDELL-VNLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred HhhHHHhhhccCC-cHHHH-HHHHHHHHHhccC---hHHHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHHHcCCC
Confidence 4789988886666 47888 4444444544322 22333332 223333 22334456899999999999999877
Q ss_pred chhhhcC---chhHHhhhhccCChHHHH---HHHHHHHHhccCC-----CCchhHHHhCcHHHHHHh-hccCCHHHHHHH
Q 000286 133 TACLRAG---ALMAVLSYLDFFSTGVQR---VALSTAANMCKKL-----PSDAADFVMEAVPLLTNL-LQYHDAKVLEHA 200 (1720)
Q Consensus 133 ~~Il~~G---gL~~LL~lLd~~~~~vqr---~Al~aLsNlc~~~-----~~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A 200 (1720)
..-+..- ...++....|.-...+.. .++.+++.+|-.. +...-..+..++|.|..- +-+.-++|..-+
T Consensus 1072 ~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~s 1151 (1702)
T KOG0915|consen 1072 FDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFS 1151 (1702)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHH
Confidence 5322221 222333334443333333 4677777777622 333445566788888765 347778899999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCC
Q 000286 201 SVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1720)
Q Consensus 201 ~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~ 237 (1720)
+..+..|++. .+..+...+ ..+++.|++..+.-
T Consensus 1152 i~tl~dl~Ks---sg~~lkP~~-~~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1152 IGTLMDLAKS---SGKELKPHF-PKLIPLLLNAYSEL 1184 (1702)
T ss_pred HHHHHHHHHh---chhhhcchh-hHHHHHHHHHcccc
Confidence 9999999996 555444333 35777777777653
No 170
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.76 E-value=9.8 Score=47.69 Aligned_cols=192 Identities=13% Similarity=0.042 Sum_probs=110.6
Q ss_pred cchHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcC---CCCHHHHHHHHHHHHHhh
Q 000286 11 SGRLKKILSGLRAD--GEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH---ESNPDIMLLAARALTHLC 85 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~--~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~---~~~~eiq~~AaraLtNL~ 85 (1720)
..+++.++..+-+. +.+..++..-...+--+...+ .+...|++..++..|.. +.+..+.-.|||+|.|++
T Consensus 212 ~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~-----~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~a 286 (533)
T KOG2032|consen 212 DLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPK-----ELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTA 286 (533)
T ss_pred CccHHHHHhhcccccchhcccchHHHHHHHHHHhCcc-----cccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHh
Confidence 34566666665332 123334444444443333322 24466777777777742 124567789999999999
Q ss_pred ccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhc---cCChHHHHHHHHH
Q 000286 86 DVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD---FFSTGVQRVALST 162 (1720)
Q Consensus 86 ~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd---~~~~~vqr~Al~a 162 (1720)
++.|+.+..-.. -.+..++-.|.+-.+.+|+-+++.+|..+..--.+.-++.+-++..+++.. .....+.-.|...
T Consensus 287 s~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~L 365 (533)
T KOG2032|consen 287 SGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVL 365 (533)
T ss_pred ccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHH
Confidence 997765543221 234455556667778999999999999997654444455555555555444 4455666555554
Q ss_pred HHH---hccCCCCchh-HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 163 AAN---MCKKLPSDAA-DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 163 LsN---lc~~~~~~~~-~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
..- +|.+.-..-| +.+.+-+-.|.-.|++..+.|. .||....+.|.
T Consensus 366 fg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~~~c~ 415 (533)
T KOG2032|consen 366 FGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSELRTCY 415 (533)
T ss_pred HHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHHHhcC
Confidence 444 4443222222 1233333334444666666654 58888777775
No 171
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=84.73 E-value=1.5 Score=34.11 Aligned_cols=29 Identities=38% Similarity=0.560 Sum_probs=26.4
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 181 AVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 181 ~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
++|.|.+++++++++|...|++||..|+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999986
No 172
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.42 E-value=1.8e+02 Score=39.98 Aligned_cols=220 Identities=13% Similarity=0.073 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHH
Q 000286 26 EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFV 105 (1720)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv 105 (1720)
--.++-.|++.+...-.+.=.+ .-....++....++|.++.+..++.+||-||.-+.......-..+- -.||.++
T Consensus 475 ~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~--~hvp~~m 549 (1010)
T KOG1991|consen 475 YGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS--AHVPPIM 549 (1010)
T ss_pred hhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh--hhhhHHH
Confidence 3467777888887666543111 1233446777788888555689999999999999987653323332 2577777
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhhccCcc-----h-hhhcCchhHHhhhhcc---CChHH---HHHHHHHHHH---hccCC
Q 000286 106 ARLLTIEYMDLAEQSLQALKKISQEHPT-----A-CLRAGALMAVLSYLDF---FSTGV---QRVALSTAAN---MCKKL 170 (1720)
Q Consensus 106 ~kLL~~~~~dl~Eqal~aL~nIS~~~~~-----~-Il~~GgL~~LL~lLd~---~~~~v---qr~Al~aLsN---lc~~~ 170 (1720)
++||.....-=.+--..+++.|-...+. + =+-.......++.+.. .+... +-.|+-+|.- +....
T Consensus 550 q~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~ 629 (1010)
T KOG1991|consen 550 QELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSL 629 (1010)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 7887765422222223445555433322 1 1111222333344431 11111 2222222222 22222
Q ss_pred CCch--h-HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCC
Q 000286 171 PSDA--A-DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLS 247 (1720)
Q Consensus 171 ~~~~--~-~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls 247 (1720)
+... . .....++|.+..+|++.-.++.+.++-.+.+++-- .++.--.+ -|+++.+.+.+... .
T Consensus 630 e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~---~~~Isp~m--W~ll~li~e~~~~~---------~ 695 (1010)
T KOG1991|consen 630 ENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL---SKEISPIM--WGLLELILEVFQDD---------G 695 (1010)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh---hcccCHHH--HHHHHHHHHHHhhh---------h
Confidence 1111 1 12234678888888888888888888887777763 22211111 25666677766554 2
Q ss_pred hhHHHHHHHHHHHHhcC
Q 000286 248 TPTYTGLIRLLSTCASG 264 (1720)
Q Consensus 248 ~~i~~~alr~L~nLas~ 264 (1720)
..-+....-+|-|+.+.
T Consensus 696 ~dyf~d~~~~l~N~vt~ 712 (1010)
T KOG1991|consen 696 IDYFTDMMPALHNYVTY 712 (1010)
T ss_pred HHHHHHHHHHHhhheee
Confidence 44566666677766543
No 173
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.87 E-value=9.3 Score=49.23 Aligned_cols=209 Identities=15% Similarity=0.130 Sum_probs=114.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcc-c---ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 15 KKILSGLRADGEEGKQVEALTQLCEMLSIGTEES-L---STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~-l---~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
...++.+.. ++..++.+|++-+.-.-.+..-+. . ..-..+.+.-.+++.+++- +..+..+|+.+|+-+-.++.+
T Consensus 237 ~~A~~~lsD-~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 237 SRAVKHLSD-DYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHH
Confidence 334444443 366777777666644443331000 0 0111233556677777755 477778888888877655444
Q ss_pred chhhhcccccHHHHHH---------HHhcCC--------cHHH-HHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCC
Q 000286 91 SCAAVVHYGAVTCFVA---------RLLTIE--------YMDL-AEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFS 152 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~---------kLL~~~--------~~dl-~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~ 152 (1720)
..+.-++......|-. .|.... ..|+ .|. -......|+..|+.-+++.=|...-
T Consensus 315 ~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee--------~d~~~~siI~sGACGA~VhGlEDEf 386 (823)
T KOG2259|consen 315 IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEE--------DDEEEESIIPSGACGALVHGLEDEF 386 (823)
T ss_pred HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhh--------ccccccccccccccceeeeechHHH
Confidence 3333332221110000 111111 0111 111 1223346777777777777776666
Q ss_pred hHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC------Cc
Q 000286 153 TGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH------GL 226 (1720)
Q Consensus 153 ~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~------gl 226 (1720)
-++.+.|+..++.++.+.|. | ...++..|+..++.+...|...|..+|..|+....-..+++..+++. ++
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~--F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dv 462 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPG--F--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDV 462 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCC--c--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHH
Confidence 67777777777777664432 2 34467777888877777888888888777777655566666666633 34
Q ss_pred HHHHHHhhcCC
Q 000286 227 VTQAATLISTS 237 (1720)
Q Consensus 227 l~~Lv~LL~~~ 237 (1720)
=..+-+||...
T Consensus 463 Re~l~elL~~~ 473 (823)
T KOG2259|consen 463 REALRELLKNA 473 (823)
T ss_pred HHHHHHHHHhc
Confidence 45555666544
No 174
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.55 E-value=36 Score=47.08 Aligned_cols=225 Identities=14% Similarity=0.083 Sum_probs=129.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC---CCHHHHHHHHHHHHHhhccCC-cchh
Q 000286 18 LSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE---SNPDIMLLAARALTHLCDVLP-SSCA 93 (1720)
Q Consensus 18 l~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~---~~~eiq~~AaraLtNL~~~~p-~~~~ 93 (1720)
+....+..+..+|..+-.-|.+++.. +.. .......+..+.+.|.+. ...-.|..++-||.-|.+..+ ++++
T Consensus 659 ~~~~e~~~~~~vQkK~yrlL~~l~~~---~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~ 734 (1176)
T KOG1248|consen 659 DPEFENSSSTKVQKKAYRLLEELSSS---PSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCD 734 (1176)
T ss_pred hHHhhccccHHHHHHHHHHHHHHhcC---Cch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHH
Confidence 33333333789999999888877776 111 122333344444444321 235678888999999998877 4444
Q ss_pred hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcC------chhHHhhhhccC-ChHHHHH--H-HHHH
Q 000286 94 AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAG------ALMAVLSYLDFF-STGVQRV--A-LSTA 163 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~G------gL~~LL~lLd~~-~~~vqr~--A-l~aL 163 (1720)
.+.. .||-++ -++...+...++.|..+|-.|.. ....++.| .|...+..|.-. --..++. + +-++
T Consensus 735 ~i~k--~I~EvI-L~~Ke~n~~aR~~Af~lL~~i~~--i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai 809 (1176)
T KOG1248|consen 735 LIPK--LIPEVI-LSLKEVNVKARRNAFALLVFIGA--IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAI 809 (1176)
T ss_pred HHHH--HHHHHH-HhcccccHHHHhhHHHHHHHHHH--HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 4443 555555 34455555555555555555542 11122222 334444444321 1111222 1 3333
Q ss_pred HHhcc-CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCC
Q 000286 164 ANMCK-KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGG 242 (1720)
Q Consensus 164 sNlc~-~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~ 242 (1720)
..+.. ....-+-.....++..++..|.++.++|++.|+..+..++..| ....+.... ..+++.+..++...
T Consensus 810 ~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~--pe~~l~~~~-~~LL~sll~ls~d~----- 881 (1176)
T KOG1248|consen 810 THILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF--PEECLSPHL-EELLPSLLALSHDH----- 881 (1176)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC--CHHHHhhhH-HHHHHHHHHHHHhh-----
Confidence 33333 2344455667888999999999999999999999999999874 333333322 34788888877554
Q ss_pred CCCCChhHHHHHHHHHHHHhc
Q 000286 243 QASLSTPTYTGLIRLLSTCAS 263 (1720)
Q Consensus 243 ~~~ls~~i~~~alr~L~nLas 263 (1720)
...++..+-.+|--|++
T Consensus 882 ----k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 882 ----KIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred ----hHHHHHHHHHHHHHHHH
Confidence 45566666666665554
No 175
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=83.49 E-value=25 Score=48.03 Aligned_cols=137 Identities=15% Similarity=0.070 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc-h----hhhcCchhHH
Q 000286 70 NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT-A----CLRAGALMAV 144 (1720)
Q Consensus 70 ~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~-~----Il~~GgL~~L 144 (1720)
+..++..|+|||.+|....|+... .+..|+|+ .-..+.+.+++.-+.-+.+.+...... . -+....+.-+
T Consensus 557 d~~irelaa~aL~~Ls~~~pk~~a----~~~L~~ll-d~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l 631 (1133)
T KOG1943|consen 557 DVKIRELAAYALHKLSLTEPKYLA----DYVLPPLL-DSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGL 631 (1133)
T ss_pred cHHHHHHHHHHHHHHHHhhHHhhc----ccchhhhh-hhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhh
Confidence 578999999999999887765433 35678888 555667778888787777777654322 0 1122222222
Q ss_pred --------hhhhccCChHHHHHHHHHHHHhcc-CCCCchhHHH-hCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC
Q 000286 145 --------LSYLDFFSTGVQRVALSTAANMCK-KLPSDAADFV-MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFA 212 (1720)
Q Consensus 145 --------L~lLd~~~~~vqr~Al~aLsNlc~-~~~~~~~~~v-~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~ 212 (1720)
..+++..-..+.|.++.-.-..+. +...-..+.+ .+---.|...+.+.+ .+.+.|.|+++.++..|.
T Consensus 632 ~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~ 708 (1133)
T KOG1943|consen 632 LSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYV 708 (1133)
T ss_pred hhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHH
Confidence 122222111344444433333333 3332222222 223333444443333 677788888888887643
No 176
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=83.48 E-value=32 Score=42.32 Aligned_cols=207 Identities=12% Similarity=0.095 Sum_probs=141.2
Q ss_pred cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh-----hhccc--ccHHHHHHHHhcCCcHHHHHHHHHH
Q 000286 51 TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA-----AVVHY--GAVTCFVARLLTIEYMDLAEQSLQA 123 (1720)
Q Consensus 51 ~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~-----~vV~~--GaVp~Lv~kLL~~~~~dl~Eqal~a 123 (1720)
.+...++++.|+..|..- +.|.+..++.+..|+.....+... .+..+ .++..|+ + ..+.+|++-.|-..
T Consensus 71 Ei~~~dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~-~--gy~~~dial~~g~m 146 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILL-R--GYENPDIALNCGDM 146 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHH-H--GGGSTTTHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHH-H--HhcCccccchHHHH
Confidence 455678899999999865 489999999999999976554422 33332 2333333 2 23456777777777
Q ss_pred HHHhhccCc--chhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHH----HhCcHHHHHHhhccCCHHHH
Q 000286 124 LKKISQEHP--TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADF----VMEAVPLLTNLLQYHDAKVL 197 (1720)
Q Consensus 124 L~nIS~~~~--~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~----v~~~lP~L~~LL~~~D~~V~ 197 (1720)
|.-.++... ..|+....+-.+..++...+-++...|..++.-+........... -..++.....||.+++--+.
T Consensus 147 lRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 147 LRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 777766544 368888888889999998899999999999988666432221111 13467788999999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHH----HHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcC---CHHHHH
Q 000286 198 EHASVCLTRIAEAFASSPDKLDE----LCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG---SPLCAK 270 (1720)
Q Consensus 198 e~A~~aLs~L~~~~~~~~~~~~~----li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~---s~~~t~ 270 (1720)
.+++..|+.|.- ++.+.+. +-+..-+..++.||.+. +.+++..|..++-..++. ++.+..
T Consensus 227 rqslkLL~elll----dr~n~~vm~~yi~~~~nLkl~M~lL~d~---------sk~Iq~eAFhvFKvFVANp~K~~~I~~ 293 (335)
T PF08569_consen 227 RQSLKLLGELLL----DRSNFNVMTRYISSPENLKLMMNLLRDK---------SKNIQFEAFHVFKVFVANPNKPPPIVD 293 (335)
T ss_dssp HHHHHHHHHHHH----SGGGHHHHHHHTT-HHHHHHHHHHTT-S----------HHHHHHHHHHHHHHHH-SS-BHHHHH
T ss_pred hhhHHHHHHHHH----chhHHHHHHHHHCCHHHHHHHHHHhcCc---------chhhhHHHHHHHHHHHhCCCCChHHHH
Confidence 999999999987 3444333 33446788899999876 788999999998877654 244444
Q ss_pred HHHH
Q 000286 271 TLLH 274 (1720)
Q Consensus 271 ~Ll~ 274 (1720)
.|+.
T Consensus 294 iL~~ 297 (335)
T PF08569_consen 294 ILIK 297 (335)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 177
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=83.38 E-value=21 Score=44.61 Aligned_cols=122 Identities=15% Similarity=0.223 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHH----h--cCCCcccccccc-cCcHHHHHHhhcCCC--CHHHHHHHHHHHHHhhccCCcchhhhccc
Q 000286 28 GKQVEALTQLCEML----S--IGTEESLSTFSV-DSFAPVLVGLLNHES--NPDIMLLAARALTHLCDVLPSSCAAVVHY 98 (1720)
Q Consensus 28 ~~ql~Al~~L~~lL----~--~~~~~~l~~~~~-~g~Vp~LV~lL~~~~--~~eiq~~AaraLtNL~~~~p~~~~~vV~~ 98 (1720)
+.|...++.|-+.+ . ....+.++.+.. ..++..|..+|++.. -+.+-..|+-+++.+.-..|..-..+.++
T Consensus 71 ~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~ 150 (379)
T PF06025_consen 71 YQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEA 150 (379)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHc
Confidence 44555555444433 3 223355567777 778999999998764 36777899999999999999888899999
Q ss_pred ccHHHHHHHHh---cCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhc
Q 000286 99 GAVTCFVARLL---TIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLD 149 (1720)
Q Consensus 99 GaVp~Lv~kLL---~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd 149 (1720)
|.++.+++.+. --+..|+.-..-.+|+-||-+... .+.+.+.+..++..+.
T Consensus 151 Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~ 206 (379)
T PF06025_consen 151 GLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFT 206 (379)
T ss_pred CChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhC
Confidence 99999997766 124577777777888888876553 6778888888777663
No 178
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=83.37 E-value=85 Score=44.71 Aligned_cols=185 Identities=10% Similarity=0.149 Sum_probs=115.0
Q ss_pred cchHHHHHHHhhcCC---------CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHH
Q 000286 11 SGRLKKILSGLRADG---------EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARAL 81 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~---------D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraL 81 (1720)
.++++.+++.|+..+ .+.+-......+-..|.+..+ + .-.-++++..++..|.. ....+..-|.+||
T Consensus 765 ~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~--f-~~sfD~yLk~Il~~l~e-~~ialRtkAlKcl 840 (1692)
T KOG1020|consen 765 ENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARS--F-SQSFDPYLKLILSVLGE-NAIALRTKALKCL 840 (1692)
T ss_pred HHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhH--H-HHhhHHHHHHHHHHhcC-chHHHHHHHHHHH
Confidence 456666777665431 123333444444445554322 1 11235678888888884 4588999999999
Q ss_pred HHhhccCCcchh-hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHH
Q 000286 82 THLCDVLPSSCA-AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVAL 160 (1720)
Q Consensus 82 tNL~~~~p~~~~-~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al 160 (1720)
.+|.++.|.... .-|+.|+...++ -+...|+|.|+..+|.----.++.+.+. -..+..-+...++.|.+.++
T Consensus 841 S~ive~Dp~vL~~~dvq~~Vh~R~~-----DssasVREAaldLvGrfvl~~~e~~~qy--Y~~i~erIlDtgvsVRKRvI 913 (1692)
T KOG1020|consen 841 SMIVEADPSVLSRPDVQEAVHGRLN-----DSSASVREAALDLVGRFVLSIPELIFQY--YDQIIERILDTGVSVRKRVI 913 (1692)
T ss_pred HHHHhcChHhhcCHHHHHHHHHhhc-----cchhHHHHHHHHHHhhhhhccHHHHHHH--HHHHHhhcCCCchhHHHHHH
Confidence 999999885433 345555555555 4568999999999986544444433321 11223333456889999999
Q ss_pred HHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000286 161 STAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIA 208 (1720)
Q Consensus 161 ~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~ 208 (1720)
.++.-+|.. .++|..+.++.-.+....+.++..|.+-++-+|..+=
T Consensus 914 KIlrdic~e--~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 914 KILRDICEE--TPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred HHHHHHHHh--CCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 999999974 3455555555555555555555557777777776653
No 179
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=82.40 E-value=19 Score=46.81 Aligned_cols=138 Identities=20% Similarity=0.264 Sum_probs=89.7
Q ss_pred cccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccccccc--ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000286 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFS--VDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1720)
Q Consensus 9 ~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~--~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~ 86 (1720)
.....+..|+...+. +.....-|.+-|.+.... || .+..+-+++.|..++ +..|+..|.+.|-.+|.
T Consensus 20 ~~~~~y~~il~~~kg--~~k~K~Laaq~I~kffk~--------FP~l~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck 88 (556)
T PF05918_consen 20 QHEEDYKEILDGVKG--SPKEKRLAAQFIPKFFKH--------FPDLQEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCK 88 (556)
T ss_dssp GGHHHHHHHHHGGGS---HHHHHHHHHHHHHHHCC---------GGGHHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--
T ss_pred cCHHHHHHHHHHccC--CHHHHHHHHHHHHHHHhh--------ChhhHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHH
Confidence 344567788888875 466666677877766554 33 345789999999877 49999999999999999
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhc---cCChHHHHHHHHHH
Q 000286 87 VLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD---FFSTGVQRVALSTA 163 (1720)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd---~~~~~vqr~Al~aL 163 (1720)
.+++.+..|++ +|+ +||.+++..-...+-++|-.|-...+. +.|..+...+- ..+..+...++..|
T Consensus 89 ~~~~~v~kvaD-----vL~-QlL~tdd~~E~~~v~~sL~~ll~~d~k-----~tL~~lf~~i~~~~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 89 DNPEHVSKVAD-----VLV-QLLQTDDPVELDAVKNSLMSLLKQDPK-----GTLTGLFSQIESSKSGDEQVRERALKFL 157 (556)
T ss_dssp T--T-HHHHHH-----HHH-HHTT---HHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHH---HS-HHHHHHHHHHH
T ss_pred hHHHHHhHHHH-----HHH-HHHhcccHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhcccCchHHHHHHHHHH
Confidence 99999888775 888 899999877777888888777766654 33344444443 34455666677666
Q ss_pred HHhcc
Q 000286 164 ANMCK 168 (1720)
Q Consensus 164 sNlc~ 168 (1720)
+.-..
T Consensus 158 ~~kl~ 162 (556)
T PF05918_consen 158 REKLK 162 (556)
T ss_dssp HHHGG
T ss_pred HHHHh
Confidence 54443
No 180
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=82.35 E-value=1.2e+02 Score=36.21 Aligned_cols=235 Identities=17% Similarity=0.174 Sum_probs=128.0
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhc--cCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHH
Q 000286 107 RLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD--FFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPL 184 (1720)
Q Consensus 107 kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd--~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~ 184 (1720)
.-|.+++..+++.|++.|..+-..-+...+...-+..++.++- ..+......++..+..+.+...... .....++..
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~-~~~~~i~~~ 84 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP-ESAVKILRS 84 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh-hhHHHHHHH
Confidence 4466789999999999999998888877777777888888774 2355556566666666664222111 122223333
Q ss_pred HHHh--hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHh
Q 000286 185 LTNL--LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 262 (1720)
Q Consensus 185 L~~L--L~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLa 262 (1720)
+..- .+.--+.....+...+-.+.+. ..+.++.+ ..+.+..+++++.... +|.....+.+++..+.
T Consensus 85 l~~~~~~q~~~q~~R~~~~~ll~~l~~~---~~~~l~~~-~~~fv~~~i~~~~gEk--------DPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 85 LFQNVDVQSLPQSTRYAVYQLLDSLLEN---HREALQSM-GDDFVYGFIQLIDGEK--------DPRNLLLSFKLLKVIL 152 (262)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHH---hHHHHHhc-hhHHHHHHHHHhccCC--------CHHHHHHHHHHHHHHH
Confidence 3221 1122244555566666666664 33333222 2347778888776653 5555555555555443
Q ss_pred cCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCccc
Q 000286 263 SGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVR 342 (1720)
Q Consensus 263 s~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~ 342 (1720)
..-+ + ..-.+++.+++ .-.+|.-.. .|
T Consensus 153 ~~~~-----------------------------~----~~~~e~lFd~~---~cYFPI~F~----pp------------- 179 (262)
T PF14500_consen 153 QEFD-----------------------------I----SEFAEDLFDVF---SCYFPITFR----PP------------- 179 (262)
T ss_pred Hhcc-----------------------------c----chhHHHHHHHh---hheeeeeee----CC-------------
Confidence 3211 0 11223333333 334442110 00
Q ss_pred CCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHH
Q 000286 343 KSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMI 419 (1720)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L 419 (1720)
+ .... .- +.......-..++..+| .|....+|.|+|-..++ ...|+..+|..|...+..-.++.+
T Consensus 180 --~--~dp~-~I--T~edLk~~L~~cl~s~~----~fa~~~~p~LleKL~s~-~~~~K~D~L~tL~~c~~~y~~~~~ 244 (262)
T PF14500_consen 180 --P--NDPY-GI--TREDLKRALRNCLSSTP----LFAPFAFPLLLEKLDST-SPSVKLDSLQTLKACIENYGADSL 244 (262)
T ss_pred --C--CCCC-CC--CHHHHHHHHHHHhcCcH----hhHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHCCHHHH
Confidence 0 0000 00 00111122223334444 56788899999999887 555999999999987765555443
No 181
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=82.04 E-value=37 Score=42.60 Aligned_cols=186 Identities=15% Similarity=0.105 Sum_probs=112.3
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhh-ccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchh
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLC-DVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTAC 135 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~-~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~I 135 (1720)
.|..++.=+++.+..+-+..|..-|.-|+ ++.-..+..-. .-++-.+++.|-.+.+.-.++-|+..|+.|++.++...
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 45555555544333444555555344443 33322222111 12444566455555778889999999999999888654
Q ss_pred hhcC--chhHHhhhhccCChHHHHHHHHHHHHhcc-CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC
Q 000286 136 LRAG--ALMAVLSYLDFFSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFA 212 (1720)
Q Consensus 136 l~~G--gL~~LL~lLd~~~~~vqr~Al~aLsNlc~-~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~ 212 (1720)
.+.- ++..+|.--..+...+-+.|.-+...... ..|... |-.++.+|...|......++.++.+|+.+.
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l- 437 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFERL- 437 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhc-
Confidence 4432 23333333345566666666555444333 223222 334444555588888888888999999974
Q ss_pred CCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHh
Q 000286 213 SSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 262 (1720)
Q Consensus 213 ~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLa 262 (1720)
..+.+..++ .++.|.+++--.+. +..++..|+.||-.|.
T Consensus 438 -~~EeL~~ll-~diaP~~iqay~S~---------SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 438 -SAEELLNLL-PDIAPCVIQAYDST---------SSTVRKTAVFCLVAMV 476 (516)
T ss_pred -CHHHHHHhh-hhhhhHHHHHhcCc---------hHHhhhhHHHhHHHHH
Confidence 555555555 35888888877665 6678999999888775
No 182
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.95 E-value=21 Score=47.11 Aligned_cols=182 Identities=16% Similarity=0.176 Sum_probs=107.4
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchh
Q 000286 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTAC 135 (1720)
Q Consensus 56 g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~I 135 (1720)
.+.|-|=.+|.+.+ ..++++||+++.++...+++.... +|..|. -++.++..-++-.|+.+|-.+|..+|.++
T Consensus 245 ~~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~p-----avs~Lq-~flssp~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 245 PLFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELAP-----AVSVLQ-LFLSSPKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred hHHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcch-----HHHHHH-HHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 35666666777654 678889999999998766654443 777777 88899999999999999999999999876
Q ss_pred hhcC-chhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCC
Q 000286 136 LRAG-ALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASS 214 (1720)
Q Consensus 136 l~~G-gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~ 214 (1720)
.-++ -|..++.-.+ -. .|.-++.-+.+-...........-++..+.=+..+-..|+.+|..+|+.+--.
T Consensus 318 ~~cN~elE~lItd~N---rs---Iat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~---- 387 (865)
T KOG1078|consen 318 TVCNLDLESLITDSN---RS---IATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR---- 387 (865)
T ss_pred cccchhHHhhhcccc---cc---hhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccH----
Confidence 6554 3333332221 11 23333333333222222222333333333334444455666666666555432
Q ss_pred HHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHH
Q 000286 215 PDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCA 269 (1720)
Q Consensus 215 ~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t 269 (1720)
...+.+.-|..+|.... ..+-+..++.++..++...++..
T Consensus 388 -------k~~~~m~FL~~~Lr~eG--------g~e~K~aivd~Ii~iie~~pdsK 427 (865)
T KOG1078|consen 388 -------KHTVMMNFLSNMLREEG--------GFEFKRAIVDAIIDIIEENPDSK 427 (865)
T ss_pred -------HHHHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHHhCcchh
Confidence 11234556666665531 34455666666666666555543
No 183
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.93 E-value=67 Score=37.45 Aligned_cols=203 Identities=18% Similarity=0.174 Sum_probs=122.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~ 93 (1720)
++.|+..+....++..+...+..|-.+....+ .. ..-++..|+.+...+ ..+.+..+.|.++.+....+..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~-----~~~v~~~L~~L~~~~-~~~~~~~~~rLl~~lw~~~~r~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-VC-----VPPVLQTLVSLVEQG-SLELRYVALRLLTLLWKANDRHF- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cc-----hhHHHHHHHHHHcCC-chhHHHHHHHHHHHHHHhCchHH-
Confidence 45567767666699999999999988877653 22 223466666666654 36777788999999988766432
Q ss_pred hhcccccHHHHHHHH--h--------cCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhh-ccCChHHHHHHHHH
Q 000286 94 AVVHYGAVTCFVARL--L--------TIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYL-DFFSTGVQRVALST 162 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kL--L--------~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lL-d~~~~~vqr~Al~a 162 (1720)
+.+..++ .. + .....+..-....++.-||...++ --...+..+-.+| +.....++-.++-+
T Consensus 74 -----~~L~~~L-~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 -----PFLQPLL-LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred -----HHHHHHH-HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 2333333 22 0 111233444445688888887776 1122455666677 67788899999999
Q ss_pred HHHhccCCCCchhHHHhCcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCC
Q 000286 163 AANMCKKLPSDAADFVMEAVPLLTNLLQYH-DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSN 238 (1720)
Q Consensus 163 LsNlc~~~~~~~~~~v~~~lP~L~~LL~~~-D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~ 238 (1720)
+.-+|.. +..-+....-.|..-|..+ .+.|++..|.-+..+..+ .-+.+..+. +...++..+-++..+.+
T Consensus 146 l~~Lc~~----~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~-~~~~e~~~~-~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 146 LAPLCEA----EVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQG-AVDSEEYEE-LKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHH----hhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccc-cCChhhhhH-HHHHHHHHHHhhccccc
Confidence 9999932 2122233344444444433 566776656555554444 223333333 34457777777776653
No 184
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.27 E-value=26 Score=45.72 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=88.0
Q ss_pred HhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc-hhhhcCchhHHhhhhc-cCChHHHHHHH
Q 000286 83 HLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLD-FFSTGVQRVAL 160 (1720)
Q Consensus 83 NL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lLd-~~~~~vqr~Al 160 (1720)
+++-.....-..+++ ++..|+ +++......++--|+..+..++.-... ..++.- ...++..|. ..+.++.|.|+
T Consensus 315 ~l~~h~D~e~~ll~~--~~~~Lg-~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrrav 390 (938)
T KOG1077|consen 315 SLAIHLDSEPELLSR--AVNQLG-QFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAV 390 (938)
T ss_pred HHHHHcCCcHHHHHH--HHHHHH-HHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHH
Confidence 333333333344443 677888 888888888888888888888764332 333333 778888888 77999999999
Q ss_pred HHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCC
Q 000286 161 STAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFAS 213 (1720)
Q Consensus 161 ~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~ 213 (1720)
-.+.-+|... ..+.++.-|...|.+-|..+.++...=++-|++.|..
T Consensus 391 DLLY~mcD~~------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 391 DLLYAMCDVS------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHhchh------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 9999999642 3455677777778889999999998888888887633
No 185
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.90 E-value=5.5 Score=51.13 Aligned_cols=184 Identities=15% Similarity=0.133 Sum_probs=124.0
Q ss_pred cCcHHHHHHhhcCC---CCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000286 55 DSFAPVLVGLLNHE---SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1720)
Q Consensus 55 ~g~Vp~LV~lL~~~---~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1720)
..|-|...++-.+. .++++|..|.-+|+.+++-+.+.+.. -.|.|+..+-.++.+.++..|+-.|+-+..-.
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcf 965 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCF 965 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence 44666666666542 37999999999999999987666543 57899944444899999999988888775432
Q ss_pred cchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000286 132 PTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF 211 (1720)
Q Consensus 132 ~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~ 211 (1720)
...+=+ .-..|..-|...+..++|+|+.++.++.-. ....+++-++.++.+|..+|.+|.+.|-..+..++..
T Consensus 966 N~~~de--~t~yLyrrL~De~~~V~rtclmti~fLila----gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K- 1038 (1128)
T COG5098 966 NTTADE--HTHYLYRRLGDEDADVRRTCLMTIHFLILA----GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK- 1038 (1128)
T ss_pred hhhhHH--HHHHHHHHhcchhhHHHHHHHHHHHHHHHc----cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc-
Confidence 221111 112333444566889999999999998752 2345788899999999999999999999999999874
Q ss_pred CCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcC
Q 000286 212 ASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASG 264 (1720)
Q Consensus 212 ~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~ 264 (1720)
++....-++ . +..-|+..... ...-+..+++.|..+...
T Consensus 1039 --dNt~yn~fi-----d-ifs~ls~~ae~------g~e~fk~II~FLt~fI~k 1077 (1128)
T COG5098 1039 --DNTMYNGFI-----D-IFSTLSSDAEN------GQEPFKLIIGFLTDFISK 1077 (1128)
T ss_pred --ccchhhhhH-----H-HHHHcCchhhc------CCCcHHHHHHHHHHHHHH
Confidence 443333322 2 22333322111 122266777777777654
No 186
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=78.82 E-value=25 Score=41.21 Aligned_cols=197 Identities=13% Similarity=0.125 Sum_probs=116.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHH----HHhh---cCCC-CHHHHHHHHHHHH---Hhh
Q 000286 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVL----VGLL---NHES-NPDIMLLAARALT---HLC 85 (1720)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~L----V~lL---~~~~-~~eiq~~AaraLt---NL~ 85 (1720)
++..|. +++.+..|+.+|++......+-..----.-|.+..| +.+= ..+. ....-...|.||+ .+|
T Consensus 2 ~i~~L~---~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vA 78 (262)
T PF04078_consen 2 LILDLC---NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVA 78 (262)
T ss_dssp HHHHTS---SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHH
T ss_pred hhHHhc---CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 445553 578999999999986654332110011122333333 3222 2111 1222234455443 344
Q ss_pred ccCCcchhhhcccccHHHHHHHHhcCC-----cHHHHHHHHHHHHHhhccCcc----hhhhcCchhHHhhhhccCChHHH
Q 000286 86 DVLPSSCAAVVHYGAVTCFVARLLTIE-----YMDLAEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDFFSTGVQ 156 (1720)
Q Consensus 86 ~~~p~~~~~vV~~GaVp~Lv~kLL~~~-----~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~~~~~vq 156 (1720)
. .|+.+..++++.+.-.|. -.|... +..++-.++.+++-+...... ..++...++.|+..+.+.+.-.+
T Consensus 79 s-hpetr~~Fl~a~iplyLy-PfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSK 156 (262)
T PF04078_consen 79 S-HPETRMPFLKAHIPLYLY-PFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSK 156 (262)
T ss_dssp H--TTTHHHHHHTTGGGGGH-HHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHH
T ss_pred c-ChHHHHHHHHcCchhheh-hhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHH
Confidence 3 678888888877543333 444433 466777777777777764333 57789999999999998777777
Q ss_pred HHHHHHHHHhccC--------CCCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 000286 157 RVALSTAANMCKK--------LPSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELC 222 (1720)
Q Consensus 157 r~Al~aLsNlc~~--------~~~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li 222 (1720)
-.|+.++..+... ...+.|..+..++-.++.- .....+.+++..+.|..+|++ ++...+++-
T Consensus 157 tvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd----nprar~aL~ 227 (262)
T PF04078_consen 157 TVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD----NPRAREALR 227 (262)
T ss_dssp HHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT----STTHHHHHH
T ss_pred HHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc----CHHHHHHHH
Confidence 7777776665432 2345666666677666654 456789999999999999999 555555554
No 187
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=78.68 E-value=92 Score=38.97 Aligned_cols=182 Identities=12% Similarity=0.118 Sum_probs=115.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHhhccCCcchhhh
Q 000286 26 EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNH----------ESNPDIMLLAARALTHLCDVLPSSCAAV 95 (1720)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~----------~~~~eiq~~AaraLtNL~~~~p~~~~~v 95 (1720)
|...++.|-..|.+.|...++.+-. .....-++.|+++++. +.+..+-.+|.++|++++-. |+-+..+
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~-~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~~~l 83 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDR-QALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIVSTL 83 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHHhhC
Confidence 6777888888888888877654321 1222235555555541 12456777999999998842 2222222
Q ss_pred cccc---cHHHHHHHHhc-CCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhh---c--cCChHHHHHHHHHHHHh
Q 000286 96 VHYG---AVTCFVARLLT-IEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYL---D--FFSTGVQRVALSTAANM 166 (1720)
Q Consensus 96 V~~G---aVp~Lv~kLL~-~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lL---d--~~~~~vqr~Al~aLsNl 166 (1720)
-+.- .|...+..|.. .....+.-.++|+|..- ..+..++...-+..++..+ . +.+..+...++.++.++
T Consensus 84 ~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q--~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~l 161 (372)
T PF12231_consen 84 SDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ--KFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRL 161 (372)
T ss_pred ChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Confidence 2111 23344423322 33568888888888752 2333455555455554444 2 56788999999999999
Q ss_pred ccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000286 167 CKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF 211 (1720)
Q Consensus 167 c~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~ 211 (1720)
....|..-...+..=+|.|...+-+....+...|..++..+...+
T Consensus 162 l~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l 206 (372)
T PF12231_consen 162 LSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCL 206 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh
Confidence 988777666666667889998888889888888777776666544
No 188
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=78.42 E-value=14 Score=42.72 Aligned_cols=120 Identities=20% Similarity=0.225 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhhccCc-----chhhhcCchhHHhhhh--------ccC-------ChHHHHHHHHHHHHhccCC---
Q 000286 114 MDLAEQSLQALKKISQEHP-----TACLRAGALMAVLSYL--------DFF-------STGVQRVALSTAANMCKKL--- 170 (1720)
Q Consensus 114 ~dl~Eqal~aL~nIS~~~~-----~~Il~~GgL~~LL~lL--------d~~-------~~~vqr~Al~aLsNlc~~~--- 170 (1720)
..++|.|+-+|.|||+.-. +.| ..-.+..||... |.| ..+-||-|+-+++.+|-..
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I-~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NV 158 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESI-ARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNV 158 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHH-HHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCc
Confidence 4788999999999987532 222 112222333322 322 3578999999999999833
Q ss_pred ----CCchhHHHhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHH-hCCcHHHHHHhhcCC
Q 000286 171 ----PSDAADFVMEAVPLLTNLLQY-HDAKVLEHASVCLTRIAEAFASSPDKLDELC-NHGLVTQAATLISTS 237 (1720)
Q Consensus 171 ----~~~~~~~v~~~lP~L~~LL~~-~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li-~~gll~~Lv~LL~~~ 237 (1720)
..+.+..++..+-.|+++|.. +|+-+.|-|+..|.+++.+ +......+. ..+.|..|+..|...
T Consensus 159 DliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~---~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 159 DLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQG---DEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred ceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcc---cHHHHHHHHHhhchHHHHHHHHHHH
Confidence 245677788899999999875 5788899999999999996 555443444 446888888888654
No 189
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.09 E-value=1.6e+02 Score=39.35 Aligned_cols=95 Identities=13% Similarity=0.207 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhc
Q 000286 156 QRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIS 235 (1720)
Q Consensus 156 qr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~ 235 (1720)
.+-.+.++..|+.+-| .....++|.|...|...++.-..+.+..+....+. -|.....+ +.+|++-+.
T Consensus 376 RqlLiktih~cav~Fp----~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek---~p~Lr~~i-----i~~l~~~~~ 443 (948)
T KOG1058|consen 376 RQLLIKTIHACAVKFP----EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEK---FPNLRASI-----IEKLLETFP 443 (948)
T ss_pred HHHHHHHHHHHhhcCh----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh---CchHHHHH-----HHHHHHhhh
Confidence 4445667776665443 23467899999999988888777777777777764 34433333 445555543
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHH
Q 000286 236 TSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAK 270 (1720)
Q Consensus 236 ~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~ 270 (1720)
.- -+..++..++|++|..|.+..++..
T Consensus 444 ~i--------rS~ki~rgalwi~GeYce~~~~i~~ 470 (948)
T KOG1058|consen 444 QI--------RSSKICRGALWILGEYCEGLSEIQS 470 (948)
T ss_pred hh--------cccccchhHHHHHHHHHhhhHHHHH
Confidence 21 2556899999999999998775543
No 190
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.37 E-value=6.3 Score=40.82 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=59.6
Q ss_pred CcHHHHHHhh-ccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHH
Q 000286 180 EAVPLLTNLL-QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLL 258 (1720)
Q Consensus 180 ~~lP~L~~LL-~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L 258 (1720)
.++-.|..+| .+.|+.++.-||.=|+.++.. .|.....+-+.|+=..+++||.+. +++++..||.++
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~---~p~gr~ii~~lg~K~~vM~Lm~h~---------d~eVr~eAL~av 110 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRH---YPNGRNIIEKLGAKERVMELMNHE---------DPEVRYEALLAV 110 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH----GGGHHHHHHHSHHHHHHHHTS-S---------SHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHH---ChhHHHHHHhcChHHHHHHHhcCC---------CHHHHHHHHHHH
Confidence 3677888888 556899999999999999996 788888888889999999999997 689999999998
Q ss_pred HHHh
Q 000286 259 STCA 262 (1720)
Q Consensus 259 ~nLa 262 (1720)
.-+.
T Consensus 111 Qklm 114 (119)
T PF11698_consen 111 QKLM 114 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 191
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=77.24 E-value=2.3 Score=46.35 Aligned_cols=140 Identities=21% Similarity=0.223 Sum_probs=96.6
Q ss_pred HHHhhcC-CCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc----hh
Q 000286 61 LVGLLNH-ESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT----AC 135 (1720)
Q Consensus 61 LV~lL~~-~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~----~I 135 (1720)
|+..|.. ...++++..|.-|+..+.+...+... ..+..+++.++.....+-...++.+|..+=.-.++ .+
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~~~-----~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDAAREEFK-----EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4444443 34577888888888888643332222 24445565666666666666788888888666664 35
Q ss_pred hhcCchhHHhhhhc--cCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc-cCCHH-HHHHHHHHHHH
Q 000286 136 LRAGALMAVLSYLD--FFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ-YHDAK-VLEHASVCLTR 206 (1720)
Q Consensus 136 l~~GgL~~LL~lLd--~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~-~~D~~-V~e~A~~aLs~ 206 (1720)
...|.+..++.++. ..+..+|..++-+++-.|.+.....+ +...+++.|..+++ .+|.. +..-|+.+|+.
T Consensus 83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 57888888888988 78899999999999999986655443 46789999999995 55565 67777777664
No 192
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=76.51 E-value=12 Score=44.97 Aligned_cols=136 Identities=20% Similarity=0.313 Sum_probs=93.4
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch-hhhcccccHHHHHHH---Hhc--------CCcHHHHHHHHHHH
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC-AAVVHYGAVTCFVAR---LLT--------IEYMDLAEQSLQAL 124 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~-~~vV~~GaVp~Lv~k---LL~--------~~~~dl~Eqal~aL 124 (1720)
++|.++.++.+. +++++..+|.||..+....+... ..+.+.|....+-+. ++. .+...+...+.-||
T Consensus 120 iiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 699999999876 69999999999999998665443 225566655544332 222 23466777777888
Q ss_pred HHhhcc---Cc---c-----hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCC
Q 000286 125 KKISQE---HP---T-----ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHD 193 (1720)
Q Consensus 125 ~nIS~~---~~---~-----~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D 193 (1720)
-.++.- .+ . .++..|.+..+....++..+.+....+..+..++...........+.++|.|..+|.+.+
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 777431 11 1 366666666555554444567777777777777776666777778889999988887654
No 193
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=75.99 E-value=9.6 Score=50.86 Aligned_cols=144 Identities=19% Similarity=0.215 Sum_probs=101.7
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccccccc-ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFS-VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~-~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
..|.|+.++.+. +-..+-.-+..|+.+|..-..+.+ .+ ...+.|.|++.|..++ .++|..+.++|--+..-.+.-
T Consensus 868 ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP~~vl--lp~~~~LlPLLLq~Ls~~D-~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 868 IVPILVSKFETA-PGSQKHNYLEALSHVLTNVPKQVL--LPQFPMLLPLLLQALSMPD-VIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred hHHHHHHHhccC-CccchhHHHHHHHHHHhcCCHHhh--ccchhhHHHHHHHhcCCCc-cchhhhHhhhhhHHHHhcccc
Confidence 356677777643 556777778889888885432221 22 2347999999999885 999999999998877655433
Q ss_pred hhhhcccccHHHHHHHHhcCCc---HHHHHHHHHHHHHhhccCcc-h--hhhcCchhHHhhhhccCChHHHHHHHHH
Q 000286 92 CAAVVHYGAVTCFVARLLTIEY---MDLAEQSLQALKKISQEHPT-A--CLRAGALMAVLSYLDFFSTGVQRVALST 162 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~---~dl~Eqal~aL~nIS~~~~~-~--Il~~GgL~~LL~lLd~~~~~vqr~Al~a 162 (1720)
...-++ -.||.|+ .|-...+ .-+++-|+++|+.|.+.-|. . -.+--+|.++...||+..--+.+.|+.+
T Consensus 944 ~t~~~~-Tlvp~lL-sls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 944 QTEHLS-TLVPYLL-SLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred chHHHh-HHHHHHH-hcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 333222 4688888 5555444 67899999999999996553 3 3456688889999998777777777655
No 194
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=75.89 E-value=7.2 Score=36.93 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHH-HHHHHHHHHHhhcCCCHHHHHHHHhCC
Q 000286 155 VQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLE-HASVCLTRIAEAFASSPDKLDELCNHG 225 (1720)
Q Consensus 155 vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e-~A~~aLs~L~~~~~~~~~~~~~li~~g 225 (1720)
-.|.|+|++.|++.......+....++++.++++..+.+.-.++ -|..+|+-|+. ..+-.+.+-+.|
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~----T~~G~~~L~~~g 70 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS----TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC----CHHHHHHHHHcC
Confidence 36789999999998766556555568999999997776654444 45555655555 666666665554
No 195
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=75.65 E-value=13 Score=48.66 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=100.0
Q ss_pred ccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000286 52 FSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1720)
Q Consensus 52 ~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1720)
...+.++|.|...+++. +..+|..+...+...++..+ -.+|..-++|.|-+-.+......++..|+-|++.++...
T Consensus 385 ~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l 460 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL 460 (700)
T ss_pred HHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence 44566889898888876 49999999999999998665 246677789999866677788999999999999999544
Q ss_pred cc-hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccC
Q 000286 132 PT-ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYH 192 (1720)
Q Consensus 132 ~~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~ 192 (1720)
.. .|++. +.+++.-..+.++.+.-..+.+..++.-..+.........++|.+..+...+
T Consensus 461 D~~~v~d~--~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 461 DKAAVLDE--LLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHhHHH--HHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 43 34432 4455555556678888888888888877655533345678999888876544
No 196
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=75.27 E-value=2.1e+02 Score=38.98 Aligned_cols=238 Identities=14% Similarity=0.125 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHH
Q 000286 27 EGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVA 106 (1720)
Q Consensus 27 ~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~ 106 (1720)
-..+-.++..++.++....+... ...++|.+..+-.. +-......||-...-..-..++ ..|+.- +..++.
T Consensus 173 t~vr~k~ve~l~~v~~~~~~~~~----~~~lv~l~~~l~~~-d~~~sr~sacglf~~~~~~~~~---~~vk~e-lr~~~~ 243 (759)
T KOG0211|consen 173 TGVREKAVESLLKVAVGLPKEKL----REHLVPLLKRLATG-DWFQSRLSACGLFGKLYVSLPD---DAVKRE-LRPIVQ 243 (759)
T ss_pred HHHHHHHHHHHHHHHHhcChHHH----HHHHHHHHHHccch-hhhhcchhhhhhhHHhccCCCh---HHHHHH-HHHHHH
Confidence 34566667777776665543321 33445554444433 2234445666666555543332 222222 344454
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHH
Q 000286 107 RLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLT 186 (1720)
Q Consensus 107 kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~ 186 (1720)
.|-.-.++.++..+..=+++++.--+..+...+.++.+.+++......++..|+-.+.++......+. .......+.++
T Consensus 244 ~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~ 322 (759)
T KOG0211|consen 244 SLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLV 322 (759)
T ss_pred hhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHH
Confidence 77777788999999999999998877888899999999999998888888888888888887554443 66778888888
Q ss_pred HhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHH-hcCC
Q 000286 187 NLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTC-ASGS 265 (1720)
Q Consensus 187 ~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nL-as~s 265 (1720)
......+..+...+...+.-+...+.. .......++....++.... .+....+..-..-+ +..+
T Consensus 323 ~~~~d~~~~v~~~~~~~~~~L~~~~~~------~~~~~~~~~~~~~l~~~~~---------~e~r~a~a~~~~~l~~~l~ 387 (759)
T KOG0211|consen 323 QAVEDGSWRVSYMVADKFSELSSAVGP------SATRTQLVPPVSNLLKDEE---------WEVRYAIAKKVQKLACYLN 387 (759)
T ss_pred HHhcChhHHHHHHHhhhhhhHHHHhcc------ccCcccchhhHHHHhcchh---------hhhhHHhhcchHHHhhhcC
Confidence 888777665554443333333332111 1222246777777776652 11222222222222 2222
Q ss_pred HHHHHHHHHcCChHHHHHhhcCCC
Q 000286 266 PLCAKTLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 266 ~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1720)
...-..+....+++.+..+....+
T Consensus 388 ~~~~~~i~~~~ilp~~~~lv~d~~ 411 (759)
T KOG0211|consen 388 ASCYPNIPDSSILPEVQVLVLDNA 411 (759)
T ss_pred cccccccchhhhhHHHHHHHhccc
Confidence 222234555666777777776554
No 197
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=74.55 E-value=47 Score=39.20 Aligned_cols=95 Identities=19% Similarity=0.158 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHh-cCCcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhh
Q 000286 73 IMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLL-TIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYL 148 (1720)
Q Consensus 73 iq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL-~~~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lL 148 (1720)
+...|.+.|--++--.|.++..+.++.++..|+ .|| ...++.++-.|+.+|-.|-.+++. ..-+.+|+..+..++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll-~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLL-DLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHH-HHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 344677888888888999999999999999999 777 557899999999999999999886 344689999999999
Q ss_pred ccC--ChHHHHHHHHHHHHhcc
Q 000286 149 DFF--STGVQRVALSTAANMCK 168 (1720)
Q Consensus 149 d~~--~~~vqr~Al~aLsNlc~ 168 (1720)
... +.++.-+++-.+.-.+.
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 753 44555566666655554
No 198
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.28 E-value=75 Score=45.22 Aligned_cols=321 Identities=16% Similarity=0.113 Sum_probs=158.7
Q ss_pred HHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcC
Q 000286 32 EALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTI 111 (1720)
Q Consensus 32 ~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~ 111 (1720)
..-++||.+.+.-++|- +|=.++++-++.-...-+.=||.-+.-|+...-+..+... .-.||.|. +-..-
T Consensus 940 sTYKELc~LASdl~qPd--------LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLy-RY~yD 1009 (1702)
T KOG0915|consen 940 STYKELCNLASDLGQPD--------LVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLY-RYQYD 1009 (1702)
T ss_pred hHHHHHHHHHhhcCChH--------HHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHh-hhccC
Confidence 34456666666554432 2444555555433333444555566666653322222211 13577777 66666
Q ss_pred CcHHHHHHHHHHHHHhhccCcchhhhc---CchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHh
Q 000286 112 EYMDLAEQSLQALKKISQEHPTACLRA---GALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL 188 (1720)
Q Consensus 112 ~~~dl~Eqal~aL~nIS~~~~~~Il~~---GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~L 188 (1720)
++..++. |..-+-|.-...++.+++. ..+.-||.-|....=.+...++.++..+.++.+..+ +.+-+|-|-..
T Consensus 1010 P~~~Vq~-aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~---~~e~lpelw~~ 1085 (1702)
T KOG0915|consen 1010 PDKKVQD-AMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ---VKEKLPELWEA 1085 (1702)
T ss_pred CcHHHHH-HHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH---HHHHHHHHHHH
Confidence 6677764 4444445444333333332 234444444444455666678999999999865544 33333333322
Q ss_pred -hccCC------HHHHHHHHHHHHHHHhhcCC--CHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHH
Q 000286 189 -LQYHD------AKVLEHASVCLTRIAEAFAS--SPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLS 259 (1720)
Q Consensus 189 -L~~~D------~~V~e~A~~aLs~L~~~~~~--~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~ 259 (1720)
+..-| .+.-..+|.+|+.||-.... +...-++ ++..+.-.|-.. |.- +.-.++..-+|..|.
T Consensus 1086 ~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~-----~l~~iLPfLl~~---gim-s~v~evr~~si~tl~ 1156 (1702)
T KOG0915|consen 1086 AFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKE-----ALDIILPFLLDE---GIM-SKVNEVRRFSIGTLM 1156 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH-----HHHHHHHHHhcc---Ccc-cchHHHHHHHHHHHH
Confidence 22222 34455677788877764211 1112222 222222222221 011 123567777888888
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCC
Q 000286 260 TCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGP 339 (1720)
Q Consensus 260 nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~ 339 (1720)
-|+..+.. .|.-.+...+.-++.-.......-+.-+..+-.+|=+++++
T Consensus 1157 dl~Kssg~----~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealD--------------------------- 1205 (1702)
T KOG0915|consen 1157 DLAKSSGK----ELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALD--------------------------- 1205 (1702)
T ss_pred HHHHhchh----hhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHH---------------------------
Confidence 88776655 33433333444444332221110000001111222223332
Q ss_pred cccCCCCCCCCCCCCCCCCccchhhHHHhhccCHH------HH----HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 000286 340 VVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPE------LL----QQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGK 409 (1720)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe------~~----~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r 409 (1720)
..|.+.-++.|- ++ ...+.+|+|.+++..-++|+..-|-.|-..|.-
T Consensus 1206 -----------------------t~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~ 1262 (1702)
T KOG0915|consen 1206 -----------------------TLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISL 1262 (1702)
T ss_pred -----------------------HHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHH
Confidence 223333233221 11 134579999999999999999999999888876
Q ss_pred HhhcCCHHHHHHhhhccchHHHHHHHh
Q 000286 410 LMYFSSAEMIQSLLSVTNISSFLAGVL 436 (1720)
Q Consensus 410 ~v~~~~~~~L~~~l~~~~iss~la~il 436 (1720)
++.-...| -.|++.-|-..+
T Consensus 1263 L~~r~~~e-------mtP~sgKll~al 1282 (1702)
T KOG0915|consen 1263 LVQRLGSE-------MTPYSGKLLRAL 1282 (1702)
T ss_pred HHHHhccc-------cCcchhHHHHHH
Confidence 65432222 245555555443
No 199
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=74.23 E-value=46 Score=41.69 Aligned_cols=240 Identities=17% Similarity=0.145 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhh-----ccCCcchhhhcccccH
Q 000286 27 EGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLC-----DVLPSSCAAVVHYGAV 101 (1720)
Q Consensus 27 ~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~-----~~~p~~~~~vV~~GaV 101 (1720)
..++++|++.|.-+...- -+.......+...+...+... .|.+++.++++|..+. +..|+.+..-+..|..
T Consensus 269 s~~rle~~qvl~~~a~~~---~~~~~~~~~l~RvI~~~~~~~-~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~f 344 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYF---SMTQAYLMELGRVICKCMGEA-DPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPF 344 (728)
T ss_pred chhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCCCC-ChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccH
Confidence 367888877774332210 001112223445555555554 5999999999998775 3456666655544432
Q ss_pred HHHH------HHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccC---ChHHHH-HHHHHHHHhccC-C
Q 000286 102 TCFV------ARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFF---STGVQR-VALSTAANMCKK-L 170 (1720)
Q Consensus 102 p~Lv------~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~---~~~vqr-~Al~aLsNlc~~-~ 170 (1720)
-.+. ..+-++....+....+-+|.+|+...- .=+.+|-=..++.|+... ....|+ .|+.+..-..-+ .
T Consensus 345 w~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f-~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~ 423 (728)
T KOG4535|consen 345 WTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAF-SNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPC 423 (728)
T ss_pred HHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhh-cCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccc
Confidence 2221 011222334455566677777754311 122233333444444322 122233 334433322222 2
Q ss_pred CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC---CCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCC
Q 000286 171 PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFA---SSPDKLDELCNHGLVTQAATLISTSNSGGGQASLS 247 (1720)
Q Consensus 171 ~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~---~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls 247 (1720)
...+...+.++...+...|....-.+.+.+.|++++|++.+. .+++..+.-+..-++.+++++-...+ ...
T Consensus 424 lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~------Ad~ 497 (728)
T KOG4535|consen 424 LRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEAS------ADK 497 (728)
T ss_pred hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhh------hhh
Confidence 234455677888888888877778899999999999998742 22222333333334555555443221 124
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHH
Q 000286 248 TPTYTGLIRLLSTCASGSPLCAKTLLHLGISGIL 281 (1720)
Q Consensus 248 ~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L 281 (1720)
..+...++++|+|+. ...+.+++++.-.++
T Consensus 498 dkV~~navraLgnll----Qvlq~i~~~~~~e~~ 527 (728)
T KOG4535|consen 498 DKVKSNAVRALGNLL----QFLQPIEKPTFAEII 527 (728)
T ss_pred hhhhhHHHHHHhhHH----HHHHHhhhccHHHHH
Confidence 567778888888875 234556666544443
No 200
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=73.67 E-value=50 Score=40.64 Aligned_cols=204 Identities=10% Similarity=0.061 Sum_probs=127.3
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--------
Q 000286 62 VGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT-------- 133 (1720)
Q Consensus 62 V~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~-------- 133 (1720)
-.+|...++.+.+.++|.-|+ ..+..++.++.|+ ..|..-+.+.+..+.....++-+...+
T Consensus 49 K~IL~G~~e~ep~~e~v~qLa----------~Ei~~~dll~~Li-~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~ 117 (335)
T PF08569_consen 49 KEILYGDGEPEPNPEQVAQLA----------QEIYRSDLLYLLI-RNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVD 117 (335)
T ss_dssp HHHHHS-SS----HHHHHHHH----------HHHHHHTHHHHHH-HTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHH
T ss_pred HHHhcCCCCCCCCHHHHHHHH----------HHHHHhCHHHHHH-HHhhhCCCcccccHHHHHHHHHhhccCCCCCchHH
Confidence 344444444555545443332 2455668888999 666666778888999999999876442
Q ss_pred hhhhc--CchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhc
Q 000286 134 ACLRA--GALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAF 211 (1720)
Q Consensus 134 ~Il~~--GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~ 211 (1720)
.+..+ ..+..|+..-+ .+.+--.+-.++..|++.........-.+.+-.+...++...-+|..+|..++.-|-..
T Consensus 118 yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~- 194 (335)
T PF08569_consen 118 YLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR- 194 (335)
T ss_dssp HHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-
T ss_pred HHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-
Confidence 12222 23333333333 33344445556666666554444444566788888889999999999999999987775
Q ss_pred CCCHHHHHHHHhCC---cHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCH---HHHHHHHHcCChHHHHHhh
Q 000286 212 ASSPDKLDELCNHG---LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSP---LCAKTLLHLGISGILKDIL 285 (1720)
Q Consensus 212 ~~~~~~~~~li~~g---ll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~---~~t~~Ll~~gil~~L~~LL 285 (1720)
+.......+... .+.....||.++ +.-++..+++.|+.|...-. ..++.+=+..-+..+..+|
T Consensus 195 --hk~~~a~fl~~n~d~ff~~~~~Ll~s~---------NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL 263 (335)
T PF08569_consen 195 --HKKLVAEFLSNNYDRFFQKYNKLLESS---------NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLL 263 (335)
T ss_dssp --SHHHHHHHHHHTHHHHHHHHHHHCT-S---------SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHT
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHccCC---------CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHh
Confidence 777777777653 677888899876 57799999999998874432 2234444456677788888
Q ss_pred cCCCc
Q 000286 286 SGSGV 290 (1720)
Q Consensus 286 ~~~~~ 290 (1720)
....+
T Consensus 264 ~d~sk 268 (335)
T PF08569_consen 264 RDKSK 268 (335)
T ss_dssp T-S-H
T ss_pred cCcch
Confidence 76543
No 201
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.55 E-value=33 Score=45.41 Aligned_cols=282 Identities=16% Similarity=0.169 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHH
Q 000286 154 GVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYH-DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAAT 232 (1720)
Q Consensus 154 ~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~-D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~ 232 (1720)
-+.|..+|++..-..-. ...+...-+-..+.++|+.. |.-|.-.+..++.-+++.+.-+++....++ ..+...+..
T Consensus 502 iiRRRVa~ilg~Wvsvq--~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~l-enlf~~lfk 578 (978)
T KOG1993|consen 502 IIRRRVAWILGQWVSVQ--QKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYL-ENLFVLLFK 578 (978)
T ss_pred HHHHHHHHHHhhhhhee--chHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhH-HHHHHHHHH
Confidence 45778899998877621 12233445667788888877 677778899999999998877777777766 445555666
Q ss_pred hhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHH--------------------HHHHHcCChHHHHHhhcCCCccc
Q 000286 233 LISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCA--------------------KTLLHLGISGILKDILSGSGVSA 292 (1720)
Q Consensus 233 LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t--------------------~~Ll~~gil~~L~~LL~~~~~~~ 292 (1720)
+|..-. ..+++..++..|+.+...-.+++ ..++.+-++.+|.++..+-...
T Consensus 579 ll~~~~--------e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~q- 649 (978)
T KOG1993|consen 579 LLKAVE--------ECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQ- 649 (978)
T ss_pred HHHHHh--------hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccC-
Confidence 665432 34567778888877654322222 1122222222222222210000
Q ss_pred ccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccc---------CCcccCCCC-------CC---CCCCC
Q 000286 293 NSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVK---------GPVVRKSPA-------SS---SGKQD 353 (1720)
Q Consensus 293 ~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~---------g~~~~~~~~-------~~---~~~~~ 353 (1720)
-.-...-++-||.+-.+. +-|.+.-...+ +...+-.|. -. +.+.+
T Consensus 650 -------S~~~~~fL~pVIel~~D~---------~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste 713 (978)
T KOG1993|consen 650 -------SFEFYPFLYPVIELSTDP---------SSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTE 713 (978)
T ss_pred -------CccchHHHHHHHHHhcCC---------CCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhh
Confidence 000011112222211100 00111000000 000000000 00 00000
Q ss_pred CCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHH--HHHHhhhccchHHH
Q 000286 354 DTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAE--MIQSLLSVTNISSF 431 (1720)
Q Consensus 354 ~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~--~L~~~l~~~~iss~ 431 (1720)
+=......-.--.+-++++.++.+...++-.+.+.+. +||.+.+.+++|++..+-.. .|...+-...++-.
T Consensus 714 --~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~-----dvr~egl~avLkiveili~t~~il~~~~~~~~L~~l 786 (978)
T KOG1993|consen 714 --NLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLD-----DVRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRL 786 (978)
T ss_pred --hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHH
Confidence 0000001112223456788888888888888877664 49999999999999764321 33333333344444
Q ss_pred HHHHh-hcCCCchHHhHHHHHHHHHhhCchhhhhhHHhhc
Q 000286 432 LAGVL-AWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREG 470 (1720)
Q Consensus 432 la~il-~~~d~~lv~~aL~i~~~Ll~K~pd~f~~~f~REG 470 (1720)
+-+|. +.+-|.+...-|+++--.+-..|+.|...+..--
T Consensus 787 f~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~ 826 (978)
T KOG1993|consen 787 FLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKN 826 (978)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence 44443 2334555556677776667777888887766544
No 202
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=72.66 E-value=67 Score=39.12 Aligned_cols=181 Identities=17% Similarity=0.112 Sum_probs=107.9
Q ss_pred cHHHHHHHHHHHHHhhccCcc--hhhh--cCchhHHhhhhccCChHHHHHHHHHHHHhccCC--CCchhHHHhCcHHHHH
Q 000286 113 YMDLAEQSLQALKKISQEHPT--ACLR--AGALMAVLSYLDFFSTGVQRVALSTAANMCKKL--PSDAADFVMEAVPLLT 186 (1720)
Q Consensus 113 ~~dl~Eqal~aL~nIS~~~~~--~Il~--~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~--~~~~~~~v~~~lP~L~ 186 (1720)
....+++++..|.++-..+.. .|.. .-.+..++..+......-+.-|+.++.=+|-.. ......+...+.|.|.
T Consensus 56 ~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~ 135 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLK 135 (309)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Confidence 367788888888887654432 2222 234677777777666677778888888888753 3556677889999999
Q ss_pred HhhccCC--HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHh--hcCCCCC-CCCCCCChhHHHHHHHHHHHH
Q 000286 187 NLLQYHD--AKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATL--ISTSNSG-GGQASLSTPTYTGLIRLLSTC 261 (1720)
Q Consensus 187 ~LL~~~D--~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~L--L~~~~~~-~~~~~ls~~i~~~alr~L~nL 261 (1720)
.++.... .++...++.||+-++--....++.+..+++ .+..+... +...... +....-+..++..||.+-+.|
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL 213 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL 213 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence 9987654 455456665666544321235555553332 23322222 2211100 000112456899999999999
Q ss_pred hcCCHHH-HHHHHHcCChHHHHHhhcCCCccccccc
Q 000286 262 ASGSPLC-AKTLLHLGISGILKDILSGSGVSANSAV 296 (1720)
Q Consensus 262 as~s~~~-t~~Ll~~gil~~L~~LL~~~~~~~~~~~ 296 (1720)
.+.-+.. ...+++ ..++.|..+|.++.....+++
T Consensus 214 lt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAA 248 (309)
T PF05004_consen 214 LTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAA 248 (309)
T ss_pred HhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHH
Confidence 8776652 233333 347899999998765443433
No 203
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=72.31 E-value=32 Score=43.81 Aligned_cols=156 Identities=18% Similarity=0.196 Sum_probs=110.1
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccc-ccccccCcHHHHHHhhcCCC---CHHHHHHHHHHHHHhhcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESL-STFSVDSFAPVLVGLLNHES---NPDIMLLAARALTHLCDV 87 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l-~~~~~~g~Vp~LV~lL~~~~---~~eiq~~AaraLtNL~~~ 87 (1720)
-...++.+.+.+. +...|++|+.+|.. ++..+++ ..|+....+..|..++.+.. +.++...+.+++..+++.
T Consensus 83 ~~a~~i~e~l~~~-~~~~~~~a~k~l~s---ls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmeh 158 (713)
T KOG2999|consen 83 HYAKRIMEILTEG-NNISKMEALKELDS---LSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEH 158 (713)
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHhh---ccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh
Confidence 3567788888876 77888888888764 3444554 57888888888999987664 356777888888888876
Q ss_pred CCcchhhhcccccHHHHHHHHhcC--CcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhccCChHHHHHHHHH
Q 000286 88 LPSSCAAVVHYGAVTCFVARLLTI--EYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALST 162 (1720)
Q Consensus 88 ~p~~~~~vV~~GaVp~Lv~kLL~~--~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~a 162 (1720)
.--.+..+-+.+++...+ +... .+..+-..|+..|+++--.... .|.+.--+..|+..|...+..+|..|+..
T Consensus 159 gvvsW~~~~~~fV~~~a~--~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial 236 (713)
T KOG2999|consen 159 GVVSWESVSNDFVVSMAS--YVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIAL 236 (713)
T ss_pred ceeeeeecccHHHHHHHH--HHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHH
Confidence 654444444544444333 2222 2355677889999998655542 57788889999999998889999998887
Q ss_pred HHHhccCCCCc
Q 000286 163 AANMCKKLPSD 173 (1720)
Q Consensus 163 LsNlc~~~~~~ 173 (1720)
+..+.++.+..
T Consensus 237 ~nal~~~a~~~ 247 (713)
T KOG2999|consen 237 LNALFRKAPDD 247 (713)
T ss_pred HHHHHhhCChH
Confidence 77777655443
No 204
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=72.20 E-value=1.5e+02 Score=35.11 Aligned_cols=67 Identities=24% Similarity=0.314 Sum_probs=51.6
Q ss_pred ccccccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 000286 50 STFSVDSFAPVLVGLLNHES-NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128 (1720)
Q Consensus 50 ~~~~~~g~Vp~LV~lL~~~~-~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS 128 (1720)
.+......||.|+..|.+++ .|-+..+|+.||.++. .+ ..++.|- |..+-++..|+|.|.-||..|-
T Consensus 61 gQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~---------~~~~~l~-k~~~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 61 GQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DP---------ESLEILT-KYIKDPCKEVRETCELAIKRLE 128 (289)
T ss_pred hhhccchhhHHHHHHhcccccchHHHHHHHHHHHhhc--ch---------hhHHHHH-HHhcCCccccchHHHHHHHHHH
Confidence 34555668999999998764 3556669999999986 22 3456666 8888889999999999988873
No 205
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=71.72 E-value=35 Score=43.46 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 152 STGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 152 ~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
+..+...|+.|++..+-+....- .-+.+..+|..+|+..|.+|.+-|..++-+|-.
T Consensus 500 N~ivRsaAv~aLskf~ln~~d~~--~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 500 NNIVRSAAVQALSKFALNISDVV--SPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred hhHHHHHHHHHHHHhccCccccc--cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 34455567888877766443221 124466778888999999999999999887765
No 206
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.31 E-value=1.7e+02 Score=36.84 Aligned_cols=218 Identities=14% Similarity=0.123 Sum_probs=130.8
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhc---C--CC---cccccccccCcHHHHHHhhcC--CC---CHHHHHHHH
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSI---G--TE---ESLSTFSVDSFAPVLVGLLNH--ES---NPDIMLLAA 78 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~---~--~~---~~l~~~~~~g~Vp~LV~lL~~--~~---~~eiq~~Aa 78 (1720)
..++.|++.|..+ +.++....+.-|.++.-. . .+ ..+..++..++++.||+.+.- +. ..+-...+.
T Consensus 125 n~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 125 NAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred ccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 3567788888765 666655444444333221 1 11 223567788899999998862 22 233344566
Q ss_pred HHHHHhhccCCcchhhhcccccHHHHHHHHhcC-CcHHHHHHHHHHHHHhhccCcc---hhhhcCchhHHhhhhccC---
Q 000286 79 RALTHLCDVLPSSCAAVVHYGAVTCFVARLLTI-EYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFF--- 151 (1720)
Q Consensus 79 raLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~-~~~dl~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~--- 151 (1720)
..+-|+.+..++.+..++++|.+.-|+.+|..- ....-...|...|.-|-.++.. ..-.-+|+..+|+-|.-+
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 788999999999999999999888887556554 4455566777788777776663 344567888888877421
Q ss_pred ------ChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcCCCH--HHHHHHH
Q 000286 152 ------STGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNL-LQYHDAKVLEHASVCLTRIAEAFASSP--DKLDELC 222 (1720)
Q Consensus 152 ------~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~~~~~~~~--~~~~~li 222 (1720)
...+..+...+++-+.........-...+.+. |.++ ++. .....-.++.+|-++..| .+ .++..++
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlq-Lm~Lmlr~-Kk~sr~SalkvLd~am~g---~~gt~~C~kfV 358 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQ-LMNLMLRE-KKVSRGSALKVLDHAMFG---PEGTPNCNKFV 358 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHH-HHHHHHHH-HHHhhhhHHHHHHHHHhC---CCchHHHHHHH
Confidence 11333444444443333222222222233444 3333 333 445566777788888776 33 5677777
Q ss_pred hCCcHHHHHHhhc
Q 000286 223 NHGLVTQAATLIS 235 (1720)
Q Consensus 223 ~~gll~~Lv~LL~ 235 (1720)
+...+..+..+..
T Consensus 359 e~lGLrtiF~~FM 371 (536)
T KOG2734|consen 359 EILGLRTIFPLFM 371 (536)
T ss_pred HHHhHHHHHHHHh
Confidence 7655555555544
No 207
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=71.03 E-value=32 Score=46.52 Aligned_cols=118 Identities=18% Similarity=0.206 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhccCCCC-----chhHHHhCcHHHHHHhhc-cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHH
Q 000286 156 QRVALSTAANMCKKLPS-----DAADFVMEAVPLLTNLLQ-YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQ 229 (1720)
Q Consensus 156 qr~Al~aLsNlc~~~~~-----~~~~~v~~~lP~L~~LL~-~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~ 229 (1720)
...++.++.|+....|. ......-+-+|.+..+|. +.+++|..-|+..+..++. +.+.+..+++.|++..
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta----n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA----NKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc----ccHHHHHHHhhhHHHH
Confidence 33588999999986661 122233456777777765 5789999999999988887 7889999999999999
Q ss_pred HHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000286 230 AATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1720)
Q Consensus 230 Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1720)
|+.+|.+. ++....++.+|-.+++ ++++...-++.|.+..|..+|..+
T Consensus 1818 LL~lLHS~----------PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~ 1865 (2235)
T KOG1789|consen 1818 LLTLLHSQ----------PSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLT 1865 (2235)
T ss_pred HHHHHhcC----------hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhcc
Confidence 99999764 5577888888888765 477888888999888888888654
No 208
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=70.89 E-value=24 Score=46.74 Aligned_cols=219 Identities=14% Similarity=0.057 Sum_probs=142.7
Q ss_pred ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHH-HHHHHHHHHHhh
Q 000286 50 STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDL-AEQSLQALKKIS 128 (1720)
Q Consensus 50 ~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl-~Eqal~aL~nIS 128 (1720)
...+..|+...|.++.... .++..+.+..+|.-.. ..+.+ .. ...|++++ .++.....-+ .-.++.+|.|++
T Consensus 498 ~~~Ik~~~~~aLlrl~~~q-~e~akl~~~~aL~~~i-~f~~~--~~--~~v~~~~~-s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 498 AKKIKPGGYEALLRLGQQQ-FEEAKLKWYHALAGKI-DFPGE--RS--YEVVKPLD-SALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred CccccccHHHHHHHHHHHh-chHHHHHHHHHHhhhc-CCCCC--ch--hhhhhhhc-chhhhhHHHHHHHHHHHHhhccc
Confidence 4567778889999888754 4666666666666111 11111 11 23677777 5555544322 235788999988
Q ss_pred ccCcc---hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCC-CchhHHH-hCcHHHHHHhhccCCHHHHHHHHHH
Q 000286 129 QEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLP-SDAADFV-MEAVPLLTNLLQYHDAKVLEHASVC 203 (1720)
Q Consensus 129 ~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~-~~~~~~v-~~~lP~L~~LL~~~D~~V~e~A~~a 203 (1720)
.-+.. .|++.-+++.+-.++.......||.++..+.|+.-+.- ...+..- ..-+|.....+...|.+.-..++.+
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a 650 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGA 650 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcccc
Confidence 65442 58888888887777778899999999999999886431 1222111 4567777777777777777666666
Q ss_pred HHHHHhhcCCCHHHHHH-HHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Q 000286 204 LTRIAEAFASSPDKLDE-LCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILK 282 (1720)
Q Consensus 204 Ls~L~~~~~~~~~~~~~-li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~ 282 (1720)
+.-|+.. ....+.. .-...-...++.++.+. +..++.--+.++.|+.....++...++...+.+.+.
T Consensus 651 ~a~I~sv---~~n~c~~~~~~~~~~e~~~~~i~~~---------~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~ 718 (748)
T KOG4151|consen 651 LAAITSV---VENHCSRILELLEWLEILVRAIQDE---------DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLS 718 (748)
T ss_pred ccchhhc---chhhhhhHHHhhcchHHHHHhhcCc---------hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHH
Confidence 6655543 2233331 11223456667777665 567888888888888888888888888888777776
Q ss_pred HhhcC
Q 000286 283 DILSG 287 (1720)
Q Consensus 283 ~LL~~ 287 (1720)
.+=.+
T Consensus 719 ~~~~~ 723 (748)
T KOG4151|consen 719 GLQKL 723 (748)
T ss_pred HHHHh
Confidence 65444
No 209
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=70.52 E-value=17 Score=36.03 Aligned_cols=69 Identities=19% Similarity=0.115 Sum_probs=57.6
Q ss_pred hhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 141 LMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 141 L~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
+...+..|....+.++-.++..+.++..... .....+..++..+...|+++|+-|--+|..+|+.|++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 4456677777778899999999999998665 34445677899999999999999999999999999996
No 210
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=70.41 E-value=2.3e+02 Score=35.98 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=92.0
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhccCc------chhhhcCchhHHhhhhcc------CChHH-HHHHHHHHHHhccCCCCc
Q 000286 107 RLLTIEYMDLAEQSLQALKKISQEHP------TACLRAGALMAVLSYLDF------FSTGV-QRVALSTAANMCKKLPSD 173 (1720)
Q Consensus 107 kLL~~~~~dl~Eqal~aL~nIS~~~~------~~Il~~GgL~~LL~lLd~------~~~~v-qr~Al~aLsNlc~~~~~~ 173 (1720)
+|+......=+-.|+-...+...... +.|.++=|.+-+=.+|.. ...++ ...++.+++-+|+..+-.
T Consensus 18 ~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElA 97 (698)
T KOG2611|consen 18 KLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELA 97 (698)
T ss_pred HHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhc
Confidence 66666666556666666666665322 247777777777666642 23344 445788889999977766
Q ss_pred hhHHHhCcHHHHHHhhccC-CHH------HHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCC
Q 000286 174 AADFVMEAVPLLTNLLQYH-DAK------VLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1720)
Q Consensus 174 ~~~~v~~~lP~L~~LL~~~-D~~------V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~ 237 (1720)
.-..+-+.||+|..++... |++ +++++..||..++. .+.-...++..|.++.+.++-.-.
T Consensus 98 sh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~----~e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 98 SHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT----AEAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred cCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc----CCchhHHHHhcCchHHHHHHHhCC
Confidence 6667888999999998654 444 88999999998887 677889999999999999876543
No 211
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.18 E-value=3.7e+02 Score=35.93 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=45.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALT 82 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLt 82 (1720)
...|+..|... .|.++++|+.+||++--+..++. ..++-.|+.+++++.++|+...|.-+|.
T Consensus 128 ~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~dee------~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 128 NEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDEE------CPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCCc------ccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 44566667776 89999999999999876554432 2457788888988888999977655443
No 212
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=68.73 E-value=2.2e+02 Score=39.61 Aligned_cols=209 Identities=14% Similarity=0.056 Sum_probs=113.3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
-++.|+.+|+.. |..++-.|+.-+.++...-. ....+.+|...++++.-.+....=.-||-+|+-++...----
T Consensus 342 vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp-----~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 342 VIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLP-----PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHhccCC-cchhhHHHHHHHHHHHccCc-----HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 456677777776 88999999999999888753 234567788888877754434555588889999886432222
Q ss_pred hhhcccccHHHHHHHHhcCCc--------HHHHHHHHHHHHHhhccCcchhhh---cCchhHHhhhhcc-CChHHHHHHH
Q 000286 93 AAVVHYGAVTCFVARLLTIEY--------MDLAEQSLQALKKISQEHPTACLR---AGALMAVLSYLDF-FSTGVQRVAL 160 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~~~--------~dl~Eqal~aL~nIS~~~~~~Il~---~GgL~~LL~lLd~-~~~~vqr~Al 160 (1720)
..+. .+||.++ +=+.-+. .-+++.|+.++--.++-....-++ ......||.---| ...++.|.|.
T Consensus 416 s~l~--dVvplI~-kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 416 SLLE--DVVPLIL-KALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred HHHH--HHHHHHH-HHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 2233 3677777 4333222 234444444443344432221111 1122222222122 3556666666
Q ss_pred HHHHHhccC---CCC-------ch----------hHH-----------HhCcHHHHHHh-hccCCHHHHHHHHHHHHHHH
Q 000286 161 STAANMCKK---LPS-------DA----------ADF-----------VMEAVPLLTNL-LQYHDAKVLEHASVCLTRIA 208 (1720)
Q Consensus 161 ~aLsNlc~~---~~~-------~~----------~~~-----------v~~~lP~L~~L-L~~~D~~V~e~A~~aLs~L~ 208 (1720)
.++-..... .|. .+ +.. .+.++..|..- +.|=|.++.+.+.|||.+|.
T Consensus 493 AAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls 572 (1133)
T KOG1943|consen 493 AALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLS 572 (1133)
T ss_pred HHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 666543332 110 00 000 11122222222 45669999999999999988
Q ss_pred hhcCCCHHHHHHHHhCCcHHHHHHhhcCC
Q 000286 209 EAFASSPDKLDELCNHGLVTQAATLISTS 237 (1720)
Q Consensus 209 ~~~~~~~~~~~~li~~gll~~Lv~LL~~~ 237 (1720)
.- .++. ...+.++.++......
T Consensus 573 ~~---~pk~----~a~~~L~~lld~~ls~ 594 (1133)
T KOG1943|consen 573 LT---EPKY----LADYVLPPLLDSTLSK 594 (1133)
T ss_pred Hh---hHHh----hcccchhhhhhhhcCC
Confidence 74 3332 2234566666555444
No 213
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=68.22 E-value=31 Score=39.97 Aligned_cols=110 Identities=10% Similarity=0.063 Sum_probs=82.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch---h---h-
Q 000286 22 RADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC---A---A- 94 (1720)
Q Consensus 22 ~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~---~---~- 94 (1720)
++...++.++.++-.+..++...+...+..+...++||-++++|..++ ..-+..|..++..|......-. + .
T Consensus 134 ~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GS-elSKtvA~fIlqKIlldD~GL~YiCqt~eRF 212 (293)
T KOG3036|consen 134 KSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGS-ELSKTVATFILQKILLDDVGLYYICQTAERF 212 (293)
T ss_pred cCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhccc-HHHHHHHHHHHHHHhhccccHHHHHHhHHHH
Confidence 344578999999999999999988777778889999999999999874 7778899998877765432110 0 0
Q ss_pred hcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc
Q 000286 95 VVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP 132 (1720)
Q Consensus 95 vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~ 132 (1720)
-+-.-.+..++..|.+.++..+...++++.-+++.+..
T Consensus 213 ~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 213 SAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence 01112455566678888899999999999999986543
No 214
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=67.68 E-value=1.1e+02 Score=39.18 Aligned_cols=303 Identities=15% Similarity=0.193 Sum_probs=148.5
Q ss_pred CcHHHHHHhhcC---CCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc
Q 000286 56 SFAPVLVGLLNH---ESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP 132 (1720)
Q Consensus 56 g~Vp~LV~lL~~---~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~ 132 (1720)
.++..|..++.. .+|.-+|..-.|+|..+-+.. .|... .+..+-+..|..+|.+..
T Consensus 26 ~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~------------~p~~~---------~il~~L~~il~~v~kNPs 84 (435)
T PF03378_consen 26 QLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDI------------LPIAV---------EILQHLTAILKEVSKNPS 84 (435)
T ss_dssp HHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTT------------GGGHH---------HHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHH------------HHHHH---------HHHHHHHHHHHHHHhCCC
Confidence 356667777754 346667766666665544322 22111 122223345556666555
Q ss_pred chhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC
Q 000286 133 TACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFA 212 (1720)
Q Consensus 133 ~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~ 212 (1720)
+....+.... ....++.+.|...+..-......++|.+..+|+.+=.+.+..+...|+.|.+.
T Consensus 85 nP~FnHylFE---------------si~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~-- 147 (435)
T PF03378_consen 85 NPRFNHYLFE---------------SIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL-- 147 (435)
T ss_dssp -HHHHHHHHH---------------HHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH--
T ss_pred CcchhhhHHH---------------HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 4333332211 12222334444322222234566899999999998889999999999999996
Q ss_pred CCH-HHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHc----CChHHHHHhhcC
Q 000286 213 SSP-DKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHL----GISGILKDILSG 287 (1720)
Q Consensus 213 ~~~-~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~----gil~~L~~LL~~ 287 (1720)
.+ ..+..... .+++.|..--.=. ....+-+++|.|..+....+... ... +++.++..|+.+
T Consensus 148 -~~~~~~p~~y~-~L~~~Ll~p~lWe---------~~gniPalvrLL~a~i~k~~~~i---~~~~~l~~iLgvFQkLi~s 213 (435)
T PF03378_consen 148 -RPSSPLPDAYK-QLFPPLLSPALWE---------RRGNIPALVRLLQAYIKKDPSFI---VANNQLEPILGVFQKLIAS 213 (435)
T ss_dssp -SS--S--TTTG-GGHHHHTSGGGGG---------STTTHHHHHHHHHHHHHHHGGG-------S-CHHHHHHHHHHHT-
T ss_pred -CCCCCCcHHHH-HHHHHHcCcchhc---------cCCCcCcHHHHHHHHHHhCchhh---cchhhHHHHHHHHHHHHCC
Confidence 22 11111100 1222222111000 11234555666666554433322 222 233344444443
Q ss_pred CCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHH
Q 000286 288 SGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREK 367 (1720)
Q Consensus 288 ~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 367 (1720)
.. +..+=.++++-|-.-+
T Consensus 214 k~-------------~D~~gF~LL~~iv~~~------------------------------------------------- 231 (435)
T PF03378_consen 214 KA-------------NDHYGFDLLESIVENL------------------------------------------------- 231 (435)
T ss_dssp TT-------------CHHHHHHHHHHHHHHS-------------------------------------------------
T ss_pred CC-------------cchHHHHHHHHHHHHC-------------------------------------------------
Confidence 22 1111122222111111
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhc---cchHHHHHHHhh---cC--
Q 000286 368 LLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSV---TNISSFLAGVLA---WK-- 439 (1720)
Q Consensus 368 ~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~---~~iss~la~il~---~~-- 439 (1720)
.++.+..|++.++-+|+.-.+++-....++.++..+.-.+..-.++.+-+++.. ..+..++..+.- .+
T Consensus 232 ----p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~ 307 (435)
T PF03378_consen 232 ----PPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVS 307 (435)
T ss_dssp -----HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--
T ss_pred ----CHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcC
Confidence 244577889999999999999888888888888888877777788888887765 233333333311 11
Q ss_pred -CCchHHhHHHHHHHHHhhCchhhhhhHHhhcHHHHHHHHH
Q 000286 440 -DPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLI 479 (1720)
Q Consensus 440 -d~~lv~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~I~~L~ 479 (1720)
...--+.++-++.+|++- ..+... ..++...-++.|.
T Consensus 308 ~~~erKi~~vGltkLL~es--~~~~~~-~~~~w~~ll~~Ll 345 (435)
T PF03378_consen 308 GPIERKICAVGLTKLLCES--PAFLSE-YSQLWPPLLEALL 345 (435)
T ss_dssp SHHHHHHHHHHHHHHHHSS--TTHHHH--CHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHhcc--HhhhhH-HHHHHHHHHHHHH
Confidence 123445677788888752 223323 3444444444443
No 215
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=67.32 E-value=2.5e+02 Score=38.16 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=44.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHH
Q 000286 203 CLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPL 267 (1720)
Q Consensus 203 aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~ 267 (1720)
++.++++. +++....+++.+.+..+...+..-+ ..+.+..++.++++++.....
T Consensus 494 ~l~~~t~~---~~~~C~~~l~~~g~~~~~~~l~~f~--------~~~~~~~il~~l~n~~~~~~~ 547 (699)
T KOG3665|consen 494 ALWNITDE---NPETCKEFLDNGGMKLLFKCLESFD--------NEELHRKILGLLGNLAEVLEL 547 (699)
T ss_pred HHHhhhcC---CHHHHHHHHhcccHHHHHHHHhhcc--------chhHHHHHHHHHHHHHHHhhh
Confidence 45567775 8999999999999999999997543 567999999999999876533
No 216
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=66.58 E-value=25 Score=38.72 Aligned_cols=112 Identities=22% Similarity=0.273 Sum_probs=73.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccccccccc--CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc---CCcc
Q 000286 17 ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVD--SFAPVLVGLLNHESNPDIMLLAARALTHLCDV---LPSS 91 (1720)
Q Consensus 17 Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~--g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~---~p~~ 91 (1720)
+...|++. +++.+..++.-+.-+...+..+. +... .++..|+.+|+..+.+.+...||.+|+.|+.. .|+.
T Consensus 30 i~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~e~---l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 30 INSLLQSK-SAYSRWAGLCLLKVTVEQCSWEI---LLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHhCCC-ChhhHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 33445565 88888888887766666543332 3233 37999999999888888889999999999854 3443
Q ss_pred hhhhcccccHHHHHHHHhcCCc-HHHHHHHHHHHHHhhccCcc
Q 000286 92 CAAVVHYGAVTCFVARLLTIEY-MDLAEQSLQALKKISQEHPT 133 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~-~dl~Eqal~aL~nIS~~~~~ 133 (1720)
...+.- .-+|.+++-|+.... ..+.+.|+.+|..+-..++.
T Consensus 106 ~Rei~t-p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 106 TREIAT-PNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPT 147 (165)
T ss_pred HHHHhh-ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCc
Confidence 333332 235555544444333 56777788888887766664
No 217
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.35 E-value=1e+02 Score=39.13 Aligned_cols=212 Identities=16% Similarity=0.111 Sum_probs=125.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHH
Q 000286 26 EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFV 105 (1720)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv 105 (1720)
.+....-+...+|-++..+-++-+ ......++.+++.|+.++-- ..-+||+=.-|++ +..+-++.+.
T Consensus 153 ~~~pc~~~tatl~cl~lqsa~e~~--~~~sde~~~~w~qls~~~~h--~~g~trlqr~m~~---------~~~~~~~~il 219 (533)
T KOG2032|consen 153 LVAPCHSCTATLCCLILQSAEEAI--QAVSDEVSRRWSQLSDNDIH--RVGLTRLQRFMAC---------VQDLEMGKIL 219 (533)
T ss_pred hhhHHHHhHHHHHHHHHHHhHHHH--HHhhhcccchhhhcccCccc--HHHHHHHHHHHHh---------hCCccHHHHH
Confidence 344444455555555544433222 33455677888888754311 2234554444443 2345566666
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhhccCcc-hhhhcCchhHHhhhhc----cCChHHHHHHHHHHHHhccCCCCchhHHHhC
Q 000286 106 ARLLTIEYMDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLD----FFSTGVQRVALSTAANMCKKLPSDAADFVME 180 (1720)
Q Consensus 106 ~kLL~~~~~dl~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lLd----~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~ 180 (1720)
.+++++.....-.+=+.....++..-.. .+-+.|.+.-++..+. ..+..+.+.|+.++.|.....|....-+...
T Consensus 220 ~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~ 299 (533)
T KOG2032|consen 220 AQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT 299 (533)
T ss_pred hhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH
Confidence 6777776655555555566666654333 3335677777766664 3456778889999999999877666566666
Q ss_pred cHHHHHHhhcc-CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHH
Q 000286 181 AVPLLTNLLQY-HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLS 259 (1720)
Q Consensus 181 ~lP~L~~LL~~-~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~ 259 (1720)
.+..+..-|.+ .+.+|+-.+..||..+.... ....+...+ -++.-++..+.... ++.....++.+++
T Consensus 300 ~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~--~~~~l~~~~-l~ialrlR~l~~se---------~~~~R~aa~~Lfg 367 (533)
T KOG2032|consen 300 QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA--SNDDLESYL-LNIALRLRTLFDSE---------DDKMRAAAFVLFG 367 (533)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh--hhcchhhhc-hhHHHHHHHHHHhc---------ChhhhhhHHHHHH
Confidence 66666655544 46899999999999888741 111221111 13455666666665 4556777777777
Q ss_pred HHh
Q 000286 260 TCA 262 (1720)
Q Consensus 260 nLa 262 (1720)
.++
T Consensus 368 ~L~ 370 (533)
T KOG2032|consen 368 ALA 370 (533)
T ss_pred HHH
Confidence 654
No 218
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=66.16 E-value=20 Score=39.76 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHh-CCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHh
Q 000286 191 YHDAKVLEHASVCLTRIAEAFASSPDKLDELCN-HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 262 (1720)
Q Consensus 191 ~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~-~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLa 262 (1720)
..|..+...++.||-.|.+ +...++.+++ .+.+..|+..|.+. +..+...++.+|+.+|
T Consensus 127 ~~~~~~~~~~l~Clkal~n----~~~G~~~v~~~~~~v~~i~~~L~s~---------~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMN----TKYGLEAVLSHPDSVNLIALSLDSP---------NIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTS----SHHHHHHHHCSSSHHHHHHHT--TT---------SHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHc----cHHHHHHHHcCcHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHH
Confidence 4577888889999988887 5666777776 48999999999765 6789999999999987
No 219
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=64.53 E-value=3.6e+02 Score=35.76 Aligned_cols=150 Identities=18% Similarity=0.215 Sum_probs=86.7
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCc----HHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSF----APVLVGLLNHESNPDIMLLAARALTHLCDV 87 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~----Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~ 87 (1720)
+.++-+|+.++.. |++.|..||..|++.+..++.......-+-.| ...|.++-..-..++.+...|-+|.-||-.
T Consensus 48 ~dLellVervqdp-d~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~n~Kk~laDIlSvLamt 126 (878)
T KOG2005|consen 48 GDLELLVERVQDP-DPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADSNLKKWLADILSVLAMT 126 (878)
T ss_pred hhHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCchhHhHHHHHHHHHhee
Confidence 4677889999887 99999999999999998775422111111111 223333333222467787888888877754
Q ss_pred CCcchhhh--------cccc-----cHHHHHHHH------hcCC---cHHHHHHHHHHHHHhhccCcc-----hhhhcCc
Q 000286 88 LPSSCAAV--------VHYG-----AVTCFVARL------LTIE---YMDLAEQSLQALKKISQEHPT-----ACLRAGA 140 (1720)
Q Consensus 88 ~p~~~~~v--------V~~G-----aVp~Lv~kL------L~~~---~~dl~Eqal~aL~nIS~~~~~-----~Il~~Gg 140 (1720)
..+....+ .+-| -|..|.-.. -+.+ ..++.+-+..+.-..-.++.. ..++-++
T Consensus 127 ~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~eAiDlL~Eve~ 206 (878)
T KOG2005|consen 127 MSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEFEAIDLLMEVEG 206 (878)
T ss_pred ecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchhHHHHHHHHhhh
Confidence 44333321 0101 122222111 0111 245555555555555555443 4788899
Q ss_pred hhHHhhhhccCChHHHHHHHHHHH
Q 000286 141 LMAVLSYLDFFSTGVQRVALSTAA 164 (1720)
Q Consensus 141 L~~LL~lLd~~~~~vqr~Al~aLs 164 (1720)
|..++.+.| ....||.|+...+
T Consensus 207 id~l~~~Vd--~~n~~RvclYl~s 228 (878)
T KOG2005|consen 207 IDLLLDYVD--EHNYQRVCLYLTS 228 (878)
T ss_pred HhHHHHHhh--hhhHHHHHHHHHH
Confidence 999999988 3556777766554
No 220
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=64.04 E-value=1.4e+02 Score=35.17 Aligned_cols=151 Identities=15% Similarity=0.211 Sum_probs=81.7
Q ss_pred cCcHHHHHHhhcCCC----------CHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHH
Q 000286 55 DSFAPVLVGLLNHES----------NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQAL 124 (1720)
Q Consensus 55 ~g~Vp~LV~lL~~~~----------~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL 124 (1720)
..++|.|+.+|.... +......|+..|+-+ -+.-+.|.|+ +|+..+.. .+
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~-----------re~~A~~~li-~l~~~~~~--------~~ 89 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF-----------REERALPPLI-RLFSQDDD--------FL 89 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH-----------hhhhhHHHHH-HHHcCCcc--------hH
Confidence 356888888886411 122233444444333 2335889999 88776553 23
Q ss_pred HHhhccCc-----c--hhhhcCchhHHhhhhccCC--hHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHH
Q 000286 125 KKISQEHP-----T--ACLRAGALMAVLSYLDFFS--TGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAK 195 (1720)
Q Consensus 125 ~nIS~~~~-----~--~Il~~GgL~~LL~lLd~~~--~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~ 195 (1720)
..+.+|.. . +.+-.|-+..|..++.... .-++..|+.++.-+....+...-.+++-.-..|...+..++..
T Consensus 90 ~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 90 EDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSF 169 (249)
T ss_pred HHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchH
Confidence 33333322 1 3455788888888887654 3456667888888887666555444444444444446555554
Q ss_pred HHHHHHHHHHHHHhhcC-CCHHHHHHHHhCCcHH
Q 000286 196 VLEHASVCLTRIAEAFA-SSPDKLDELCNHGLVT 228 (1720)
Q Consensus 196 V~e~A~~aLs~L~~~~~-~~~~~~~~li~~gll~ 228 (1720)
+.-.- ++.+++-+. .--..+..+++.|+|+
T Consensus 170 ~~~~L---v~~~~dL~~~EL~~~I~~~f~~~lVd 200 (249)
T PF06685_consen 170 LWGSL---VADICDLYPEELLPEIRKAFEDGLVD 200 (249)
T ss_pred HHHHH---HHHHHhcCHHHhHHHHHHHHHcCCCC
Confidence 22222 234444310 1123455555666663
No 221
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.63 E-value=63 Score=42.99 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=101.6
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch
Q 000286 55 DSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA 134 (1720)
Q Consensus 55 ~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~ 134 (1720)
.+.+.-|.++|+.+...+-+....-||.-+++.+|++... ++..||.-..++++.++.-..+..| -++.|..
T Consensus 390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~~i~~rILhlL---G~EgP~a 461 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFTQIAVRILHLL---GKEGPKA 461 (865)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccchHHHHHHHHHH---hccCCCC
Confidence 3567778888887767888888889999999988877765 4568897888888887766555554 4566655
Q ss_pred hhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 135 CLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 135 Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
..-..-+..+.+.+--.+..+...|+.+++++..+.+. ....+.-.|.+++...|.+|.+.|-..+..+-.
T Consensus 462 ~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 462 PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 44444444444444444566777789999998853322 123456667777999999999999998888775
No 222
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=60.83 E-value=2.1e+02 Score=36.40 Aligned_cols=242 Identities=10% Similarity=0.045 Sum_probs=140.5
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
.=+..|+..+.+. |+..+-....-|.++...-. ..+.++...+.-.|++++.....+.-..+..+.|+.|..|..-.
T Consensus 133 ~fi~~Ll~l~~S~-D~rER~~lk~~l~~iy~k~~--~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~p 209 (409)
T PF01603_consen 133 KFIKKLLELFDSP-DPRERDYLKTILHRIYGKFP--NLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVP 209 (409)
T ss_dssp HHHHHHHHTTTSS-THHHHHHHHHHHHHHHHH-T--TTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCC
Confidence 3467788888887 99888777777766665422 22557777777888888876555666667888888888764311
Q ss_pred hhhhcccccHHHHHHHHhcCCc-HHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCC
Q 000286 92 CAAVVHYGAVTCFVARLLTIEY-MDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKL 170 (1720)
Q Consensus 92 ~~~vV~~GaVp~Lv~kLL~~~~-~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~ 170 (1720)
.......=....|+ -|...+. .....|-..++..+....+... .-.+..++.+=--.++.-+---+.-+..++...
T Consensus 210 lk~eh~~fl~~vll-PLh~~~~~~~y~~~L~~~~~~f~~kdp~l~--~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~ 286 (409)
T PF01603_consen 210 LKEEHKQFLRKVLL-PLHKSPHLSSYHQQLSYCVVQFLEKDPSLA--EPVIKGLLKHWPKTNSQKEVLFLNELEEILEVL 286 (409)
T ss_dssp --HHHHHHHHHTTG-GGGGSTGGGGTHHHHHHHHHHHHHH-GGGH--HHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT-
T ss_pred CcHHHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHHhCchhH--HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhc
Confidence 11100000111222 3333443 2224455555555554444311 111222332222334444555677788888877
Q ss_pred CCchhHHH-hCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhC---CcHHHHHHhhcCCCCCCCCCCC
Q 000286 171 PSDAADFV-MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNH---GLVTQAATLISTSNSGGGQASL 246 (1720)
Q Consensus 171 ~~~~~~~v-~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~---gll~~Lv~LL~~~~~~~~~~~l 246 (1720)
+...+..+ ..++..|...+.+..-+|.+.|+..+. + +.+-.++.. .+++.+..-|... +....
T Consensus 287 ~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~--------n-~~~~~li~~~~~~i~p~i~~~L~~~----~~~HW 353 (409)
T PF01603_consen 287 PPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN--------N-EYFLSLISQNSRVILPIIFPALYRN----SKNHW 353 (409)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG--------S-HHHHHHHHCTHHHHHHHHHHHHSST----TSS-S
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC--------C-HHHHHHHHhChHHHHHHHHHHHHHH----HHHHh
Confidence 66666544 468888899999999999998886542 2 222233333 2667777766543 13456
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHH
Q 000286 247 STPTYTGLIRLLSTCASGSPLCAKTL 272 (1720)
Q Consensus 247 s~~i~~~alr~L~nLas~s~~~t~~L 272 (1720)
+..++..+..++..+...++..-+.+
T Consensus 354 n~~Vr~~a~~vl~~l~~~d~~lf~~~ 379 (409)
T PF01603_consen 354 NQTVRNLAQNVLKILMEMDPKLFDKC 379 (409)
T ss_dssp STTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 78899999999999998888876553
No 223
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.93 E-value=70 Score=40.91 Aligned_cols=122 Identities=14% Similarity=0.157 Sum_probs=83.5
Q ss_pred cccHHHHHHHH-hcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhc-cCChHHHHHHHHHHHHhccCCCCchh
Q 000286 98 YGAVTCFVARL-LTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD-FFSTGVQRVALSTAANMCKKLPSDAA 175 (1720)
Q Consensus 98 ~GaVp~Lv~kL-L~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNlc~~~~~~~~ 175 (1720)
.|+|..|+ .. .+-.+.||+..|+-||+.+|.+.++. +...+++|. ..+.++..-.+.++.=.|.+...
T Consensus 550 ~~vv~~lL-h~avsD~nDDVrRAAViAlGfvc~~D~~~------lv~tvelLs~shN~hVR~g~AvaLGiacag~G~--- 619 (926)
T COG5116 550 LGVVSTLL-HYAVSDGNDDVRRAAVIALGFVCCDDRDL------LVGTVELLSESHNFHVRAGVAVALGIACAGTGD--- 619 (926)
T ss_pred chhHhhhh-eeecccCchHHHHHHHHheeeeEecCcch------hhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc---
Confidence 36677666 33 45567999999999999999887754 344566664 45667766666777777775432
Q ss_pred HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcC
Q 000286 176 DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIST 236 (1720)
Q Consensus 176 ~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~ 236 (1720)
+-++.+|..|......-|.+.||.+++-|... ++++.-..+. ++++++.+++..
T Consensus 620 ---~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q--~n~~Lnp~v~--~I~k~f~~vI~~ 673 (926)
T COG5116 620 ---KVATDILEALMYDTNDFVRQSAMIAVGMILMQ--CNPELNPNVK--RIIKKFNRVIVD 673 (926)
T ss_pred ---HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh--cCcccChhHH--HHHHHHHHHHhh
Confidence 23577788888888889999999999998875 2333222221 456666666644
No 224
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=59.77 E-value=1.4e+02 Score=44.50 Aligned_cols=202 Identities=14% Similarity=0.114 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHHHHHHhcCC--Ccccccc-cccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHH
Q 000286 26 EEGKQVEALTQLCEMLSIGT--EESLSTF-SVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVT 102 (1720)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~--~~~l~~~-~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp 102 (1720)
+..+.+.|+..|+++...-- ++ +..+ -...++.+|..+|....+.+++....+|+.+|.....+ .+ ..|- +
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eE-L~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~---nI-kSGW-k 1223 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREE-LANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN---NV-KSGW-K 1223 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhh-hhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh---hh-hcCc-H
Confidence 56788888887766544221 12 1222 24568999999999877899999999999999864332 22 3343 3
Q ss_pred HHHHHHhc----CCcHHHHHHHHHHHHHhhccCcchhhh--cCchhHHhhhhccC-----ChHHHHHHHHHHHHhcc---
Q 000286 103 CFVARLLT----IEYMDLAEQSLQALKKISQEHPTACLR--AGALMAVLSYLDFF-----STGVQRVALSTAANMCK--- 168 (1720)
Q Consensus 103 ~Lv~kLL~----~~~~dl~Eqal~aL~nIS~~~~~~Il~--~GgL~~LL~lLd~~-----~~~vqr~Al~aLsNlc~--- 168 (1720)
.+. .++. .....+.+.|..++..|..++-..+.. .+.+.-|+..|..| ...+=-.|+..+.+|+.
T Consensus 1224 tIF-~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1224 SMF-MVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHH-HHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 333 2333 456899999999999999876554432 45555555555311 11121233333333311
Q ss_pred -C------C-C----------------C------chhHHHhCcHHHHHHh---hccCCHHHHHHHHHHHHHHHhhcCC--
Q 000286 169 -K------L-P----------------S------DAADFVMEAVPLLTNL---LQYHDAKVLEHASVCLTRIAEAFAS-- 213 (1720)
Q Consensus 169 -~------~-~----------------~------~~~~~v~~~lP~L~~L---L~~~D~~V~e~A~~aLs~L~~~~~~-- 213 (1720)
. . . . .......--+|.|..+ ....+.+|...|+..|.++...+.+
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F 1382 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF 1382 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC
Confidence 0 0 0 0 0001112235555555 5667899999999999999876422
Q ss_pred CHHHHHHHHhCCcHHHHHHhhc
Q 000286 214 SPDKLDELCNHGLVTQAATLIS 235 (1720)
Q Consensus 214 ~~~~~~~li~~gll~~Lv~LL~ 235 (1720)
+++.-+.+++ ++|-.|..-+.
T Consensus 1383 s~~~W~~if~-~VLFPIFd~l~ 1403 (1780)
T PLN03076 1383 SLPLWERVFE-SVLFPIFDYVR 1403 (1780)
T ss_pred CHHHHHHHHH-HHHHHHHHHHH
Confidence 3444444444 56666666554
No 225
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=59.71 E-value=52 Score=36.19 Aligned_cols=95 Identities=17% Similarity=0.272 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCH--HHHHHhhhccchHHHHHHHhhcCC-CchHHhHHH
Q 000286 373 PELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSA--EMIQSLLSVTNISSFLAGVLAWKD-PHVLIPSLQ 449 (1720)
Q Consensus 373 pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~--~~L~~~l~~~~iss~la~il~~~d-~~lv~~aL~ 449 (1720)
+|.+.+-....+..|+.+.+......++..++.++.+|..++.. +..+++.. ..+..|+..++.--+ ......+|.
T Consensus 58 ~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~t-p~l~~~i~~ll~l~~~~~~~~~~l~ 136 (165)
T PF08167_consen 58 WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIAT-PNLPKFIQSLLQLLQDSSCPETALD 136 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhh-ccHHHHHHHHHHHHhccccHHHHHH
Confidence 77776667788888999999999999999999999999988654 44555543 458888888876433 678888999
Q ss_pred HHHHHHhhCchhhhhhHHh
Q 000286 450 IAEILMEKLPGTFSKMFVR 468 (1720)
Q Consensus 450 i~~~Ll~K~pd~f~~~f~R 468 (1720)
....||..+|-.|.++-.+
T Consensus 137 ~L~~ll~~~ptt~rp~~~k 155 (165)
T PF08167_consen 137 ALATLLPHHPTTFRPFANK 155 (165)
T ss_pred HHHHHHHHCCccccchHHH
Confidence 9999999999999887543
No 226
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=59.10 E-value=65 Score=43.00 Aligned_cols=183 Identities=15% Similarity=0.082 Sum_probs=119.5
Q ss_pred HHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHH-HHhhccCc---chhhhcCchhHHhhhhccC
Q 000286 76 LAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQAL-KKISQEHP---TACLRAGALMAVLSYLDFF 151 (1720)
Q Consensus 76 ~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL-~nIS~~~~---~~Il~~GgL~~LL~lLd~~ 151 (1720)
.|..+-..++.-.+.....++...+ ..++.......+.-++++.-|+. +.++.... ..+++.|+..+|+.+..+.
T Consensus 438 la~~a~qev~~~~~~n~~~v~~~r~-rk~~~~~~~~~~~svakt~~~~~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q 516 (748)
T KOG4151|consen 438 LAAFAFQEVAALSPLNWGNVHMSRA-RKRLSLDEDPSCESVAKTVSWAKNEYLAAKEKYERAKKIKPGGYEALLRLGQQQ 516 (748)
T ss_pred HHHHHHhhhhhccccccchHHHHHH-HHhhccCcchhhhHHHHHHHHHHHHHHhhhhHHhcCccccccHHHHHHHHHHHh
Confidence 4444444444545555555544332 22221333334567777777655 56663222 2699999999999999887
Q ss_pred ChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHH--HHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHH
Q 000286 152 STGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVL--EHASVCLTRIAEAFASSPDKLDELCNHGLVTQ 229 (1720)
Q Consensus 152 ~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~--e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~ 229 (1720)
..+....+..+|.- ..+... ....++++.+.+.++.. .+.. -.++.++.||+.. +....+.++..-.++.
T Consensus 517 ~e~akl~~~~aL~~---~i~f~~-~~~~~v~~~~~s~~~~d-~~~~en~E~L~altnLas~---s~s~r~~i~ke~~~~~ 588 (748)
T KOG4151|consen 517 FEEAKLKWYHALAG---KIDFPG-ERSYEVVKPLDSALHND-EKGLENFEALEALTNLASI---SESDRQKILKEKALGK 588 (748)
T ss_pred chHHHHHHHHHHhh---hcCCCC-Cchhhhhhhhcchhhhh-HHHHHHHHHHHHhhcccCc---chhhHHHHHHHhcchh
Confidence 77888888888871 222111 22456777777776543 3333 3577788888874 7777777888777777
Q ss_pred HHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 000286 230 AATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLG 276 (1720)
Q Consensus 230 Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~g 276 (1720)
+-+++... .+..+..++.++.||.-+..-....+.+.+
T Consensus 589 ie~~~~ee---------~~~lqraa~e~~~NLl~~~~~~e~si~e~~ 626 (748)
T KOG4151|consen 589 IEELMTEE---------NPALQRAALESIINLLWSPLLYERSIVEYK 626 (748)
T ss_pred hHHHhhcc---------cHHHHHHHHHHHHHHHhhHHHHHHHhhccc
Confidence 77777665 577999999999999988877777777743
No 227
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=58.72 E-value=1.5e+02 Score=39.30 Aligned_cols=209 Identities=14% Similarity=0.124 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhcCCCcccccccccCcHH-HHHHhhc--CCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHH
Q 000286 30 QVEALTQLCEMLSIGTEESLSTFSVDSFAP-VLVGLLN--HESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVA 106 (1720)
Q Consensus 30 ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp-~LV~lL~--~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~ 106 (1720)
-+-.+-.|+.-+......+.......+.|| .++.+.. -...+-.+-..|+-+.++-.-.. ...++-|..+.
T Consensus 185 D~~~Lg~li~el~ng~~~~~~~~~~~~~ipk~~~~~~~k~~~~~~~~r~n~~~~~~~~~~~~g-----ff~n~fvd~~~- 258 (690)
T KOG1243|consen 185 DSWGLGCLIEELFNGSLLTKTDLSNTGKIPKALIELYCKKLGATELKRPNKLRFILECRLLGG-----FFRNDFVDTLL- 258 (690)
T ss_pred hhhhHHHHHHHHhCcccCcchhhhccCccchhHHHHHHHHhccccccccchhhHHHHHHhccc-----cccchHHHHHH-
Confidence 344455555555554333333444555566 4443331 11112222235555555543222 22223333333
Q ss_pred HH--hcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHH
Q 000286 107 RL--LTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPL 184 (1720)
Q Consensus 107 kL--L~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~ 184 (1720)
.| +.+...+-+..=..-|-+....-+..|+..-.++.|+..+.+.+ .-...+.-+.-+.+.....+ ....++|.
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p~ 334 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRIIPV 334 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchhhh
Confidence 33 23344444444445555544555667788888888888777655 22233333333333222222 56789999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000286 185 LTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1720)
Q Consensus 185 L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas 263 (1720)
|+.+....|..|.-..+.-+-..++. .-+.+++.-+++++..-+... ++.++...++++..|+.
T Consensus 335 l~kLF~~~Dr~iR~~LL~~i~~~i~~------Lt~~~~~d~I~phv~~G~~DT---------n~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 335 LLKLFKSPDRQIRLLLLQYIEKYIDH------LTKQILNDQIFPHVALGFLDT---------NATLREQTLKSMAVLAP 398 (690)
T ss_pred HHHHhcCcchHHHHHHHHhHHHHhhh------cCHHhhcchhHHHHHhhcccC---------CHHHHHHHHHHHHHHHh
Confidence 99999999998886554444444442 344566677899999999876 67788888888887774
No 228
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=58.64 E-value=35 Score=39.60 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhcCCCc-cccccc----ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhh-hcccccH
Q 000286 28 GKQVEALTQLCEMLSIGTEE-SLSTFS----VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAA-VVHYGAV 101 (1720)
Q Consensus 28 ~~ql~Al~~L~~lL~~~~~~-~l~~~~----~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~-vV~~GaV 101 (1720)
.-|.-||..|||+-..++|- .+-.-+ .+.++..|+++|....++-....|.-.|.|++.+....+.. ..+.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 45888999999999887663 221111 23378888888888878899999999999999988776654 4588999
Q ss_pred HHHH
Q 000286 102 TCFV 105 (1720)
Q Consensus 102 p~Lv 105 (1720)
..|+
T Consensus 219 ~~Li 222 (257)
T PF12031_consen 219 SHLI 222 (257)
T ss_pred HHHH
Confidence 9998
No 229
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=58.49 E-value=84 Score=35.28 Aligned_cols=161 Identities=22% Similarity=0.187 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHhcCCCccc----ccccccC------cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhccc
Q 000286 29 KQVEALTQLCEMLSIGTEESL----STFSVDS------FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHY 98 (1720)
Q Consensus 29 ~ql~Al~~L~~lL~~~~~~~l----~~~~~~g------~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~ 98 (1720)
++..|+..|..+....+...+ ..+.+++ .-+.|+.++-.+.++.++..|+.+|..|.++....-...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 455666666555554233222 2223333 667777777666689999999999999998753222221111
Q ss_pred ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhc-cCChHHHHHHHHHHHHhccCCCCchh--
Q 000286 99 GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD-FFSTGVQRVALSTAANMCKKLPSDAA-- 175 (1720)
Q Consensus 99 GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNlc~~~~~~~~-- 175 (1720)
. =-...+..+.. .|+.+-.+ .=..|+..|. ..+..++...+.|++.++.+.|+...
T Consensus 82 ~--------~~~~sFtslS~----tLa~~i~~---------lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~ 140 (182)
T PF13251_consen 82 K--------GPSGSFTSLSS----TLASMIME---------LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPP 140 (182)
T ss_pred C--------CCCCCcccHHH----HHHHHHHH---------HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCH
Confidence 1 00011222221 11111111 0112233333 33556777788888888887766543
Q ss_pred HHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 176 DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 176 ~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
..+..++..+..++.+.|..|...++.|+.-+...
T Consensus 141 ~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 141 GLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 44667788888889999999999999999988764
No 230
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=58.04 E-value=4.1e+02 Score=36.43 Aligned_cols=131 Identities=17% Similarity=0.165 Sum_probs=86.7
Q ss_pred hHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 000286 142 MAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDEL 221 (1720)
Q Consensus 142 ~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~l 221 (1720)
..++..+...+...-+..+.++.+++.-....... ..+-++.-..-.+..=..+....+.+|.++++- +++.+..+
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~---~~~~L~~l 519 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDF---DPSHLKEL 519 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 34445555667778888889999988732111111 111111112222222246777888889999995 89999998
Q ss_pred Hh-CCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHhh
Q 000286 222 CN-HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS--GSPLCAKTLLHLGISGILKDIL 285 (1720)
Q Consensus 222 i~-~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas--~s~~~t~~Ll~~gil~~L~~LL 285 (1720)
+. .+....++.+|-++ ..++...|+.+|..+.. +--+..+.+++.+.-.+|..+-
T Consensus 520 ~~d~~~~~~i~s~lfsp---------~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~ 577 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSP---------DDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAIN 577 (727)
T ss_pred HcCcchhhHHHhheeCC---------ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHH
Confidence 85 57899999999887 46799999999998764 3456777788876666555543
No 231
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=57.69 E-value=24 Score=39.81 Aligned_cols=77 Identities=16% Similarity=0.037 Sum_probs=52.2
Q ss_pred ccHHHHHHHHhc-----CCcHHHHHHHHHHHHHhhccCcc--hhhhc--Cc--hhHHhhhhccCChHHHHHHHHHHHHhc
Q 000286 99 GAVTCFVARLLT-----IEYMDLAEQSLQALKKISQEHPT--ACLRA--GA--LMAVLSYLDFFSTGVQRVALSTAANMC 167 (1720)
Q Consensus 99 GaVp~Lv~kLL~-----~~~~dl~Eqal~aL~nIS~~~~~--~Il~~--Gg--L~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1720)
.+|..|++.+.. ....+-......+|.||++-... .+++. +. |..|+.++.+.+..-.+-++.+|.|||
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNcc 131 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCC 131 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhh
Confidence 367777755555 23456667888999999986543 44432 33 677777777775555566899999999
Q ss_pred cCCCCchh
Q 000286 168 KKLPSDAA 175 (1720)
Q Consensus 168 ~~~~~~~~ 175 (1720)
-......+
T Consensus 132 Fd~~~H~~ 139 (192)
T PF04063_consen 132 FDTDSHEW 139 (192)
T ss_pred ccHhHHHH
Confidence 86654443
No 232
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=57.46 E-value=1.1e+02 Score=40.73 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhc-cCChHHHHHHHHHHHHhccC
Q 000286 113 YMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD-FFSTGVQRVALSTAANMCKK 169 (1720)
Q Consensus 113 ~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd-~~~~~vqr~Al~aLsNlc~~ 169 (1720)
+.||+..|+-+|+.|+-+.++. ++..+++|. +++.++.--|+-+|.=.|.+
T Consensus 568 nDDVrRaAVialGFVl~~dp~~------~~s~V~lLses~N~HVRyGaA~ALGIaCAG 619 (929)
T KOG2062|consen 568 NDDVRRAAVIALGFVLFRDPEQ------LPSTVSLLSESYNPHVRYGAAMALGIACAG 619 (929)
T ss_pred chHHHHHHHHHheeeEecChhh------chHHHHHHhhhcChhhhhhHHHHHhhhhcC
Confidence 4455555555555554444422 223333332 34444444444444444443
No 233
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=57.16 E-value=1.1e+02 Score=41.60 Aligned_cols=209 Identities=13% Similarity=0.129 Sum_probs=124.9
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchh
Q 000286 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTAC 135 (1720)
Q Consensus 56 g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~I 135 (1720)
.+.|.++..++++ .+++++.-.|-+..+-..+...-...+..-.+|.+. .|..-..-.++...+|.+--++......+
T Consensus 437 ~llp~~~~~l~de-~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~-el~~d~~wRvr~ail~~ip~la~q~~~~~ 514 (759)
T KOG0211|consen 437 ELLPLLIGNLKDE-DPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIV-ELAEDLLWRVRLAILEYIPQLALQLGVEF 514 (759)
T ss_pred ccChhhhhhcchh-hHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhh-hhccchhHHHHHHHHHHHHHHHHhhhhHH
Confidence 3678888888876 488988888888777666554445566666777777 55444445555555565555555544333
Q ss_pred hhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCH
Q 000286 136 LRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSP 215 (1720)
Q Consensus 136 l~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~ 215 (1720)
+..---..|...+.+.--++++.|+..+.-++.... ... .....+|.+.....++.-......+.++.-|+.-+
T Consensus 515 ~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~---- 588 (759)
T KOG0211|consen 515 FDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEW-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL---- 588 (759)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cch-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHh----
Confidence 333333344444545555777777777777776433 232 23445555555544433333333344444444321
Q ss_pred HHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhc
Q 000286 216 DKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 286 (1720)
Q Consensus 216 ~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~ 286 (1720)
-+.+....+++-+.++..+. .+++...+++.|-.+... ......+..+.+.+..+..
T Consensus 589 --g~ei~~~~Llp~~~~l~~D~---------vanVR~nvak~L~~i~~~---L~~~~~~~~v~pll~~L~~ 645 (759)
T KOG0211|consen 589 --GQEITCEDLLPVFLDLVKDP---------VANVRINVAKHLPKILKL---LDESVRDEEVLPLLETLSS 645 (759)
T ss_pred --ccHHHHHHHhHHHHHhccCC---------chhhhhhHHHHHHHHHhh---cchHHHHHHHHHHHHHhcc
Confidence 12344445678888888776 567899999988887654 2335666667777777666
No 234
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=57.04 E-value=96 Score=40.66 Aligned_cols=60 Identities=23% Similarity=0.235 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCCccc--ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 000286 26 EEGKQVEALTQLCEMLSIGTEESL--STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDV 87 (1720)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l--~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~ 87 (1720)
.+.++.-|+..||-++....-... ..--...++..|+..++ . .+..|+.++|||.|+...
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~-~~an~ll~vR~L~N~f~~ 618 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-A-DPANQLLVVRCLANLFSN 618 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-c-chhHHHHHHHHHHHhccC
Confidence 356777777777666554321110 00112237777887777 2 488999999999999986
No 235
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.71 E-value=1.2e+02 Score=38.86 Aligned_cols=152 Identities=11% Similarity=0.031 Sum_probs=92.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~ 93 (1720)
...+++.|..+.|+.++..++-.+.-.-+.. -..++|..|++.--++.|.++...|+-||+-+|+..+
T Consensus 517 add~I~ell~d~ds~lRy~G~fs~alAy~GT--------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---- 584 (926)
T COG5116 517 ADDYINELLYDKDSILRYNGVFSLALAYVGT--------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---- 584 (926)
T ss_pred HHHHHHHHhcCchHHhhhccHHHHHHHHhcC--------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCc----
Confidence 3445665554447777777776664433332 2346788888884445579999999999999987655
Q ss_pred hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhh---ccCChHHHHHH-HHHHHHhccC
Q 000286 94 AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYL---DFFSTGVQRVA-LSTAANMCKK 169 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lL---d~~~~~vqr~A-l~aLsNlc~~ 169 (1720)
.+++..++-|.++.+.-|+.-..-+|+--|..... ..++.+| -.......|++ +-+++-+...
T Consensus 585 -----~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~--------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 585 -----DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD--------KVATDILEALMYDTNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred -----chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc--------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence 45566665566788899999999999988765543 2222222 23455555554 4444443332
Q ss_pred CCCchhHHHhCcHHHHHHhhc
Q 000286 170 LPSDAADFVMEAVPLLTNLLQ 190 (1720)
Q Consensus 170 ~~~~~~~~v~~~lP~L~~LL~ 190 (1720)
....-...+.++...+..++.
T Consensus 652 ~n~~Lnp~v~~I~k~f~~vI~ 672 (926)
T COG5116 652 CNPELNPNVKRIIKKFNRVIV 672 (926)
T ss_pred cCcccChhHHHHHHHHHHHHh
Confidence 222222344555555555543
No 236
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=54.72 E-value=61 Score=42.95 Aligned_cols=176 Identities=18% Similarity=0.154 Sum_probs=98.2
Q ss_pred cccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCC---CHHHHHHHHH---HHH
Q 000286 9 HQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHES---NPDIMLLAAR---ALT 82 (1720)
Q Consensus 9 ~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~---~~eiq~~Aar---aLt 82 (1720)
++...+.-|++.|.+. + -...+|+..+..++.+-. -|...++..|..++.++. ++.+...|.- +|.
T Consensus 354 GT~~a~~~i~~~i~~~-~-~~~~ea~~~~~~~~~~~~------~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv 425 (574)
T smart00638 354 GTPPALKFIKQWIKNK-K-ITPLEAAQLLAVLPHTAR------YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLV 425 (574)
T ss_pred CCHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHhhh------cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHH
Confidence 4456677777777665 2 122344455544444422 234567888888887542 3344433333 444
Q ss_pred HhhccCCcchhhhcccccHHHHHHHHhc---CCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhc---cCChHHH
Q 000286 83 HLCDVLPSSCAAVVHYGAVTCFVARLLT---IEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLD---FFSTGVQ 156 (1720)
Q Consensus 83 NL~~~~p~~~~~vV~~GaVp~Lv~kLL~---~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd---~~~~~vq 156 (1720)
+-.+...+.+...+-...++.|.+.|.. ..+.+-+.-++.||+|+..... +..+..++. ..+..++
T Consensus 426 ~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~--------i~~l~~~l~~~~~~~~~iR 497 (574)
T smart00638 426 RRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSS--------IKVLEPYLEGAEPLSTFIR 497 (574)
T ss_pred HHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhH--------HHHHHHhcCCCCCCCHHHH
Confidence 4333333333222223467777754433 3445556678999999865332 333444443 2355677
Q ss_pred HHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc--cCCHHHHHHHHHHHHHH
Q 000286 157 RVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ--YHDAKVLEHASVCLTRI 207 (1720)
Q Consensus 157 r~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~--~~D~~V~e~A~~aLs~L 207 (1720)
..|+|++.++....+. .+-+.|..+.. ..+.+|.-.|+..|..-
T Consensus 498 ~~Av~Alr~~a~~~p~-------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 498 LAAILALRNLAKRDPR-------KVQEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHHHHhCch-------HHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 7899999988653322 23455555543 34688887777776644
No 237
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=54.32 E-value=92 Score=41.58 Aligned_cols=174 Identities=16% Similarity=0.124 Sum_probs=92.8
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC---CCHHHHHHHHHHHHHhh-
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE---SNPDIMLLAARALTHLC- 85 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~---~~~eiq~~AaraLtNL~- 85 (1720)
+...+.-+++.|... .-...+|.+.|..+..... -|...++..|..|++.+ .++.+...|+-+++.+.
T Consensus 393 T~~av~~i~~~I~~~--~~~~~ea~~~l~~l~~~~~------~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~ 464 (618)
T PF01347_consen 393 TNPAVKFIKDLIKSK--KLTDDEAAQLLASLPFHVR------RPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVH 464 (618)
T ss_dssp SHHHHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhC
Confidence 344556666666553 2223334455544444432 24456677777777643 23555555554555444
Q ss_pred --ccCC------cchhhhcccccHHHHHHHHh---cCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccC---
Q 000286 86 --DVLP------SSCAAVVHYGAVTCFVARLL---TIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFF--- 151 (1720)
Q Consensus 86 --~~~p------~~~~~vV~~GaVp~Lv~kLL---~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~--- 151 (1720)
+... ......+-.-.++.|...|- ...+.+-..-+|.||+|+-.. ..++.++.++...
T Consensus 465 ~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--------~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 465 KYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--------ESIPVLLPYIEGKEEV 536 (618)
T ss_dssp HHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--------GGHHHHHTTSTTSS-S
T ss_pred ceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--------hhhHHHHhHhhhcccc
Confidence 3331 11122333356777775444 345567788899999999531 3566777777644
Q ss_pred ChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhcc--CCHHHHHHHHHHHHH
Q 000286 152 STGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQY--HDAKVLEHASVCLTR 206 (1720)
Q Consensus 152 ~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~--~D~~V~e~A~~aLs~ 206 (1720)
+..++-.|+|++.++.... -..+.+.|..++.+ .+.+|.-.|...|..
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~-------~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHC-------PEKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT--------HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcC-------cHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 5667778999999774322 23456667777543 367777777666554
No 238
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=54.13 E-value=1.2e+02 Score=41.42 Aligned_cols=133 Identities=18% Similarity=0.182 Sum_probs=83.3
Q ss_pred hhhcCchhHHhhhhccC-----ChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc----cCC----HHHHHHHH
Q 000286 135 CLRAGALMAVLSYLDFF-----STGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ----YHD----AKVLEHAS 201 (1720)
Q Consensus 135 Il~~GgL~~LL~lLd~~-----~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~----~~D----~~V~e~A~ 201 (1720)
+-+.|||..+|.+|+.. .......++..+..||.-........-.++++.|...|. ... ..+.+..+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 44689999999999742 234455566777777764444444444688888888764 434 67888888
Q ss_pred HHHHHHHhhcCCCHHHHHHH----HhCC-------cHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHH
Q 000286 202 VCLTRIAEAFASSPDKLDEL----CNHG-------LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAK 270 (1720)
Q Consensus 202 ~aLs~L~~~~~~~~~~~~~l----i~~g-------ll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~ 270 (1720)
..+-.|.... +.+.+... ...| -+.-|++.|.+. ....++.+...++|+|.+|+-|+++..+
T Consensus 193 ~IiE~ll~ea--~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~-----~~r~~~~i~~~l~RiLP~Lt~G~~e~m~ 265 (802)
T PF13764_consen 193 EIIESLLSEA--NSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSP-----FVRSNPQILQALARILPFLTYGNEEKMD 265 (802)
T ss_pred HHHHHHHHHH--hhhhhhhccccccccccccccHHHHHHHHHHhcCc-----cccCCHHHHHHHHHHhhHHhcCCHHHHH
Confidence 7777776631 11111110 0111 244444444432 1123677888999999999999999888
Q ss_pred HHHH
Q 000286 271 TLLH 274 (1720)
Q Consensus 271 ~Ll~ 274 (1720)
.|++
T Consensus 266 ~Lv~ 269 (802)
T PF13764_consen 266 ALVE 269 (802)
T ss_pred HHHH
Confidence 7776
No 239
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.12 E-value=1.1e+02 Score=40.56 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=66.4
Q ss_pred HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHH
Q 000286 177 FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIR 256 (1720)
Q Consensus 177 ~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr 256 (1720)
.+.+.+-.|..-..+.|.+|.-.+|..|..|.+. ...++..+-.++..++..-|... -+.+...|+.
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~----~~eidd~vfn~l~e~l~~Rl~Dr---------ep~VRiqAv~ 148 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE----NAEIDDDVFNKLNEKLLIRLKDR---------EPNVRIQAVL 148 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc----ccccCHHHHHHHHHHHHHHHhcc---------CchHHHHHHH
Confidence 5666777777777788999999999999999983 33444444445677777777665 3679999999
Q ss_pred HHHHHhcC-CHHHHHHHHHcCChHHHHHhhcCCC
Q 000286 257 LLSTCASG-SPLCAKTLLHLGISGILKDILSGSG 289 (1720)
Q Consensus 257 ~L~nLas~-s~~~t~~Ll~~gil~~L~~LL~~~~ 289 (1720)
+|+.+-.. .++ ++.+...+..++..++
T Consensus 149 aLsrlQ~d~~de------e~~v~n~l~~liqnDp 176 (892)
T KOG2025|consen 149 ALSRLQGDPKDE------ECPVVNLLKDLIQNDP 176 (892)
T ss_pred HHHHHhcCCCCC------cccHHHHHHHHHhcCC
Confidence 99987521 111 2456667778787665
No 240
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=54.01 E-value=1e+02 Score=36.36 Aligned_cols=181 Identities=16% Similarity=0.095 Sum_probs=108.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~ 93 (1720)
+-...+.|.+. ++.....+++++..+|..--.... ....... .. .+ .+ .....
T Consensus 5 ls~~~d~L~s~-~~~~ir~GLrq~~~lL~~l~~~~~-~~~~~~~--------~~-----~~-~~-----------~~~l~ 57 (257)
T PF08045_consen 5 LSLAFDNLYSE-DTPKIRKGLRQLEGLLAQLCLSIR-QSRNSSK--------RS-----SA-AS-----------RKGLE 57 (257)
T ss_pred HHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhhccc-ccccccc--------ch-----hh-cc-----------chhhh
Confidence 45567788887 888888999999887764211100 0000000 00 00 00 01111
Q ss_pred hhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccC-ChHHHHHHHHHHHHhccCC-C
Q 000286 94 AVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFF-STGVQRVALSTAANMCKKL-P 171 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~-~~~vqr~Al~aLsNlc~~~-~ 171 (1720)
..-+.-+++-+. +|.+.-.-.++...+.+|..|....+..-. +.. .....-.|+.++--||--. +
T Consensus 58 ~~~~~~~~~eF~-~LQ~~Fe~Nl~~~Lv~~l~~l~~~~~~~~~------------~~~~~~~li~~aL~vLQGl~LLHp~ 124 (257)
T PF08045_consen 58 LFRDDPALREFQ-KLQEGFEWNLASRLVSWLDRLLGRGSHIDG------------DSPSNDSLIALALRVLQGLCLLHPP 124 (257)
T ss_pred hcccchhHHHHH-HhHHHhhcchhhhhHHHHHHHHhhcccccC------------cccchhHHHHHHHHHHHHHHHcCch
Confidence 122333445555 555544456666777777665443331000 111 1223445777888888844 4
Q ss_pred CchhHHHhCcHHHHHHhhc-cCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCC
Q 000286 172 SDAADFVMEAVPLLTNLLQ-YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1720)
Q Consensus 172 ~~~~~~v~~~lP~L~~LL~-~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~ 237 (1720)
...+-.-...+..|..+|. ...+.+...++.+|..+.-. ++.+...+-..+.+..++.++...
T Consensus 125 Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld---~p~N~r~FE~~~Gl~~v~~llk~~ 188 (257)
T PF08045_consen 125 SRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLD---SPENQRDFEELNGLSTVCSLLKSK 188 (257)
T ss_pred HHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHc---ChHHHHHHHHhCCHHHHHHHHccc
Confidence 4444445678999999994 45788888888887776664 899999888999999999999876
No 241
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.81 E-value=54 Score=39.32 Aligned_cols=166 Identities=17% Similarity=0.135 Sum_probs=105.8
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
...+.+.+..|.++ |-.....++.-|+.+.....+ .+. -.-..+|..+++=|++. ...+-..||.++.-|+.....
T Consensus 87 ~~al~~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e-~l~-~~L~~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~ 162 (334)
T KOG2933|consen 87 EAALKQALKKLSSD-DWEDKVDGLNSIRRLSEFHPE-SLN-PMLHEVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNN 162 (334)
T ss_pred HHHHHHHHHHhchH-HHHHHhhhHHHHHHHHhhhHH-HHH-HHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888776 888888899888876665432 111 11233566677777755 366777999999999987665
Q ss_pred chhhhcccccHHHHHHHHhcCCcHH---HHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhc
Q 000286 91 SCAAVVHYGAVTCFVARLLTIEYMD---LAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMC 167 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~~~~~d---l~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc 167 (1720)
.+.. ....++-.|+.....+ |+|.|..+|..+-..-. -.-.++.|+.++.++...+.++++.+..|+-
T Consensus 163 ~i~~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt----p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 163 SIDQ-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT----PQKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHH-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC----hHHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 5554 3334443555544433 77888888877754322 2234566777788889999999999999887
Q ss_pred cCC--CCchhHHHhCcHHHHHHhh
Q 000286 168 KKL--PSDAADFVMEAVPLLTNLL 189 (1720)
Q Consensus 168 ~~~--~~~~~~~v~~~lP~L~~LL 189 (1720)
... +......+.+.++.+.+-+
T Consensus 234 ~rl~v~~~~~~~~~dl~~a~~~~~ 257 (334)
T KOG2933|consen 234 IRLGVLPVLLQGSCDLSRAAQEQG 257 (334)
T ss_pred eeccccchhhHhHHHHHHHHHhhh
Confidence 633 3333334444444444433
No 242
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=53.69 E-value=2.9e+02 Score=32.94 Aligned_cols=182 Identities=15% Similarity=0.116 Sum_probs=90.9
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhccCCcchhhhcc
Q 000286 19 SGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHE-SNPDIMLLAARALTHLCDVLPSSCAAVVH 97 (1720)
Q Consensus 19 ~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~-~~~eiq~~AaraLtNL~~~~p~~~~~vV~ 97 (1720)
..|.++ |+.++-.|+.-|+++|..-....+ ...-|..|++++.+. ++......|..+|..+..... +.
T Consensus 6 ~~Ltse-d~~~R~ka~~~Ls~vL~~lp~~~L----~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~------~~ 74 (262)
T PF14500_consen 6 EYLTSE-DPIIRAKALELLSEVLERLPPDFL----SRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN------FS 74 (262)
T ss_pred hhhCCC-CHHHHHHHHHHHHHHHHhCCHhhc----cHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC------CC
Confidence 456776 999999999999999998654433 233355666655421 123334333444444442111 11
Q ss_pred cccHHHHHHHHhcCC-----cHHHHHHHHHHHHHhhccCcchhhhc--CchhHHhhhhcc-CChHHHHHHHHHHHHhccC
Q 000286 98 YGAVTCFVARLLTIE-----YMDLAEQSLQALKKISQEHPTACLRA--GALMAVLSYLDF-FSTGVQRVALSTAANMCKK 169 (1720)
Q Consensus 98 ~GaVp~Lv~kLL~~~-----~~dl~Eqal~aL~nIS~~~~~~Il~~--GgL~~LL~lLd~-~~~~vqr~Al~aLsNlc~~ 169 (1720)
.+.+..+++.+.+.- .-..+-.+.+.|..+-.++...+-.. .-+..+++.++. .++.-.-.+..++..++..
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 122333333433211 13445566666666655544333211 223333333331 1222222111111111110
Q ss_pred -----------------------CCCc--------------------hhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHH
Q 000286 170 -----------------------LPSD--------------------AADFVMEAVPLLTNLLQYHDAKVLEHASVCLTR 206 (1720)
Q Consensus 170 -----------------------~~~~--------------------~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~ 206 (1720)
.|+. .-.....++|.|..-|.++...+..+++.+|..
T Consensus 155 ~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~ 234 (262)
T PF14500_consen 155 FDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKA 234 (262)
T ss_pred cccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 0000 011234578888888888888888888888888
Q ss_pred HHhhc
Q 000286 207 IAEAF 211 (1720)
Q Consensus 207 L~~~~ 211 (1720)
.+..|
T Consensus 235 c~~~y 239 (262)
T PF14500_consen 235 CIENY 239 (262)
T ss_pred HHHHC
Confidence 77764
No 243
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=52.99 E-value=3.3e+02 Score=37.52 Aligned_cols=183 Identities=10% Similarity=0.031 Sum_probs=119.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhh
Q 000286 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACL 136 (1720)
Q Consensus 59 p~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il 136 (1720)
+.|-.-|.+. +..-..+|...|.-+++... -....-..|.+-.++...+.-.++.+.-+++.+|+-|+.--.. .=.
T Consensus 256 ~~l~t~~~s~-~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSK-KWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred hHHHHhhhcc-chHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 3333333344 35666788888877776443 1112224455666664445556799999999999999875543 334
Q ss_pred hcCchhHHhhhhccCCh---HHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCC
Q 000286 137 RAGALMAVLSYLDFFST---GVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFAS 213 (1720)
Q Consensus 137 ~~GgL~~LL~lLd~~~~---~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~ 213 (1720)
..+..+.++..+..... +..+.|+-++.|.+ .....++.+...+.+..+.+...+...+.+......+
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~---------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNST---------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc---------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 45677888887765444 44555666666622 3456788899999999999999988888888876322
Q ss_pred CHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000286 214 SPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1720)
Q Consensus 214 ~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas 263 (1720)
.....---.++++.++...... +..+...++.+++.+..
T Consensus 405 --~~~~~~t~~~l~p~~~~~~~D~---------~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 405 --KTVEKETVKTLVPHLIKHINDT---------DKDVRKAALEAVAAVMK 443 (815)
T ss_pred --cCcchhhHHHHhHHHhhhccCC---------cHHHHHHHHHHHHHHHH
Confidence 1111111235677777777665 67899999999988754
No 244
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=52.90 E-value=1.2e+02 Score=36.00 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=76.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhc------c
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQ------E 130 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~------~ 130 (1720)
.+.-|.++|+.++ ++.. .++|+|+.. .+|+...||.|+ . ...+.++...|+..|.++.- +
T Consensus 14 ~LkdL~r~lr~dd-~~~~-~v~r~lg~~---------~iv~~DLiPiL~-~--~~~~~~l~~~~l~LLV~LT~P~~~~~~ 79 (266)
T PF04821_consen 14 CLKDLKRFLRRDD-EDQR-DVRRQLGEW---------NIVQKDLIPILI-S--YKDDDKLFLACLRLLVNLTWPIELLVE 79 (266)
T ss_pred HHHHHHHHHHHhC-cchH-HHHHHHHHh---------chhhhhHHHHHH-h--ccCchHHHHHHHHHHHHhCCCHHHhcc
Confidence 4566666666443 2222 555555443 466667777666 1 12367777788888877763 1
Q ss_pred Cc-chhhhcCchhHHhhhhc-----cCChHHHHHHHHHHHHhcc----CCCCchhHHHhCcHHHHHHhhccCCHHHHHHH
Q 000286 131 HP-TACLRAGALMAVLSYLD-----FFSTGVQRVALSTAANMCK----KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHA 200 (1720)
Q Consensus 131 ~~-~~Il~~GgL~~LL~lLd-----~~~~~vqr~Al~aLsNlc~----~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A 200 (1720)
.. ........+..+.+++. |.+..+.+..+..+..+.. .....+...++-++-.+.++|.-+++......
T Consensus 80 ~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~ 159 (266)
T PF04821_consen 80 SQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKR 159 (266)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 11 11111222233333332 2233333333333333221 11333444555566666666655443211100
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCC
Q 000286 201 SVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1720)
Q Consensus 201 ~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~ 237 (1720)
-. ..-. -....+..+.+.|+..-|+.+.++.
T Consensus 160 ~~--~~~~----~~d~li~~l~~~~v~~lLL~l~s~~ 190 (266)
T PF04821_consen 160 SD--EDSS----LHDQLIWALFESGVLDLLLTLASSP 190 (266)
T ss_pred cc--hhHH----HHHHHHHHHHHcCHHHHHHHHHhCc
Confidence 00 0000 1345566667778887777777665
No 245
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=52.88 E-value=3.5e+02 Score=32.28 Aligned_cols=216 Identities=16% Similarity=0.162 Sum_probs=124.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhcCCCc------cc-ccc-------cccCcHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000286 18 LSGLRADGEEGKQVEALTQLCEMLSIGTEE------SL-STF-------SVDSFAPVLVGLLNHESNPDIMLLAARALTH 83 (1720)
Q Consensus 18 l~~L~s~~D~~~ql~Al~~L~~lL~~~~~~------~l-~~~-------~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtN 83 (1720)
+..|.+. .+..-++|+.-|.+++..-+-+ .+ ..+ .-.|+.+-+++=|.+. .....+.+.|.-
T Consensus 13 vAcL~S~-~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss---~t~e~tl~lL~~ 88 (262)
T PF14225_consen 13 VACLESI-HEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSS---STYELTLRLLSR 88 (262)
T ss_pred HHhhcCC-cHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCC---CcHHHHHHHHHH
Confidence 5667776 7788888888888887765311 11 122 2334555555555543 334445556666
Q ss_pred hhccCCc-------chhhhcccccHHHHHHHHhcCC---cHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhcc--C
Q 000286 84 LCDVLPS-------SCAAVVHYGAVTCFVARLLTIE---YMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDF--F 151 (1720)
Q Consensus 84 L~~~~p~-------~~~~vV~~GaVp~Lv~kLL~~~---~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~--~ 151 (1720)
++....+ .+-...-.+.+|.+++.+-... ......+++..|..+|.... ...|..++..... +
T Consensus 89 L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-----~~~La~il~~ya~~~f 163 (262)
T PF14225_consen 89 LTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-----LPNLARILSSYAKGRF 163 (262)
T ss_pred HhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-----CccHHHHHHHHHhcCC
Confidence 6543211 1111112235777775543333 12455667777877775433 2344455444421 2
Q ss_pred --ChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHH
Q 000286 152 --STGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQ 229 (1720)
Q Consensus 152 --~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~ 229 (1720)
.....+.++..+++-+. | .....++-.|..+|.+.-.-+...++..|..+....... .. ...+++..
T Consensus 164 r~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~----~~-~~~dlisp 232 (262)
T PF14225_consen 164 RDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR----SP-HGADLISP 232 (262)
T ss_pred CCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC----CC-cchHHHHH
Confidence 22345555555554332 1 123456777889998888889999998888888742111 11 66679999
Q ss_pred HHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCC
Q 000286 230 AATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS 265 (1720)
Q Consensus 230 Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s 265 (1720)
|.++|... -...|+.+|-++.+.+
T Consensus 233 llrlL~t~------------~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 233 LLRLLQTD------------LWMEALEVLDEIVTRS 256 (262)
T ss_pred HHHHhCCc------------cHHHHHHHHHHHHhhc
Confidence 99999664 4667888887776543
No 246
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=52.86 E-value=1.1e+02 Score=34.72 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC--c--HHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHH
Q 000286 194 AKVLEHASVCLTRIAEAFASSPDKLDELCNHG--L--VTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCA 269 (1720)
Q Consensus 194 ~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~g--l--l~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t 269 (1720)
..-.......|+||+. .++-.+.+++.. . +.+|+-++.+. +.--+..++.+|.|+|=..+.+
T Consensus 72 ~~~~~yla~vl~NlS~----~~~gR~~~l~~~~~~~~l~kLl~ft~~~---------s~iRR~Gva~~IrNccFd~~~H- 137 (192)
T PF04063_consen 72 KDNYDYLASVLANLSQ----LPEGRQFFLDPQRYDGPLQKLLPFTEHK---------SVIRRGGVAGTIRNCCFDTDSH- 137 (192)
T ss_pred CcchhHHHHHHHHhcC----CHHHHHHHhCchhhhhHHHHHHHHhccC---------cHHHHHHHHHHHHHhhccHhHH-
Confidence 3445566677788887 788888888663 4 77777777665 5667888999999999776666
Q ss_pred HHHHH---cCChHHHHHhhcCCCc
Q 000286 270 KTLLH---LGISGILKDILSGSGV 290 (1720)
Q Consensus 270 ~~Ll~---~gil~~L~~LL~~~~~ 290 (1720)
..|+. .++++.|.--|.|...
T Consensus 138 ~~LL~~~~~~iLp~LLlPLaGpEe 161 (192)
T PF04063_consen 138 EWLLSDDEVDILPYLLLPLAGPEE 161 (192)
T ss_pred HHhcCchhhhhHHHHHhhccCCCc
Confidence 44555 4777777777776553
No 247
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=52.74 E-value=51 Score=35.51 Aligned_cols=90 Identities=18% Similarity=0.214 Sum_probs=68.6
Q ss_pred HHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCC
Q 000286 162 TAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGG 241 (1720)
Q Consensus 162 aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~ 241 (1720)
.+..+|...... ...-++++-.|...|++.++.++-.|+..|-.++.+. ...-..++.+.+++..|+.++...
T Consensus 20 ~il~icD~I~~~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNC--G~~fh~evask~Fl~eL~kl~~~~---- 92 (144)
T cd03568 20 LILDVCDKVKSD-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENC--GKRFHQEVASRDFTQELKKLINDR---- 92 (144)
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CHHHHHHHhhHHHHHHHHHHhccc----
Confidence 344566533222 2345789999999999999999999999999999873 344566777888999999999763
Q ss_pred CCCCCChhHHHHHHHHHHHHh
Q 000286 242 GQASLSTPTYTGLIRLLSTCA 262 (1720)
Q Consensus 242 ~~~~ls~~i~~~alr~L~nLa 262 (1720)
....++..++.+|-..+
T Consensus 93 ----~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 93 ----VHPTVKEKLREVVKQWA 109 (144)
T ss_pred ----CCHHHHHHHHHHHHHHH
Confidence 26778888888887765
No 248
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=52.58 E-value=70 Score=35.08 Aligned_cols=112 Identities=18% Similarity=0.211 Sum_probs=67.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcC-------------------CCcc-------------cccccccCcHHHHH
Q 000286 15 KKILSGLRADGEEGKQVEALTQLCEMLSIG-------------------TEES-------------LSTFSVDSFAPVLV 62 (1720)
Q Consensus 15 ~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~-------------------~~~~-------------l~~~~~~g~Vp~LV 62 (1720)
..|+.-|+.+....+++++++.|+-+=... +... ...+-..-++..|+
T Consensus 13 ~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi~~L~ 92 (160)
T PF11865_consen 13 DILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVINALM 92 (160)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHHHHHHH
Confidence 344555666667888999888876431110 0000 11122223678888
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 000286 63 GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128 (1720)
Q Consensus 63 ~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS 128 (1720)
++|+++.-..-+..++.++.+|+....-.+-..+ .-+||.++ ..+......++|..++-|+.|.
T Consensus 93 ~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l-~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 93 RILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFL-RVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHH-HHHHhCCHHHHHHHHHHHHHHH
Confidence 8888776555566788888888854322221111 24788888 4444444488998888888764
No 249
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=52.28 E-value=5.2e+02 Score=33.04 Aligned_cols=186 Identities=12% Similarity=0.125 Sum_probs=101.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccc-c-cccccCcHHHHHHhhcCC----CCHHHHH--HHHHHHHHhhcc
Q 000286 16 KILSGLRADGEEGKQVEALTQLCEMLSIGTEESL-S-TFSVDSFAPVLVGLLNHE----SNPDIML--LAARALTHLCDV 87 (1720)
Q Consensus 16 ~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l-~-~~~~~g~Vp~LV~lL~~~----~~~eiq~--~AaraLtNL~~~ 87 (1720)
.++..+... .-..|+.|+--..+.....+-... . -+-..-.-+-+-++|... +.|+... .+.-.|+.+|.
T Consensus 15 ~~~~L~~~k-~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~- 92 (698)
T KOG2611|consen 15 DCLKLLKGK-RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR- 92 (698)
T ss_pred hHHHHhccc-ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-
Confidence 344555554 447788998888887776543222 1 111111234444555422 2344333 44455555554
Q ss_pred CCcchh--hhcccccHHHHHHHHhcCCcHH------HHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhc-cCChHHH
Q 000286 88 LPSSCA--AVVHYGAVTCFVARLLTIEYMD------LAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLD-FFSTGVQ 156 (1720)
Q Consensus 88 ~p~~~~--~vV~~GaVp~Lv~kLL~~~~~d------l~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd-~~~~~vq 156 (1720)
.|+-.. .+++ .||.|.+.+-.-.+.| +.+.|-.+|..++...+. ..+..|+++.+-|.-. ....+-+
T Consensus 93 ~pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ 170 (698)
T KOG2611|consen 93 VPELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDM 170 (698)
T ss_pred ChhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhH
Confidence 344433 3664 8999996665566666 889999999999987664 6899999999987553 2222333
Q ss_pred HHHHHHHHHh-----ccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000286 157 RVALSTAANM-----CKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIA 208 (1720)
Q Consensus 157 r~Al~aLsNl-----c~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~ 208 (1720)
.-|+-++--. |-......|.. ++..+..-....+....-.+|..|+.+-
T Consensus 171 alal~Vlll~~~~~~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 171 ALALKVLLLLVSKLDCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred HHHHHHHHHHHHhcccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3333322222 22222333322 2333333334445555556677776443
No 250
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=50.06 E-value=82 Score=41.68 Aligned_cols=92 Identities=17% Similarity=0.120 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhh-hccCChHHHHHHHHHHHHhccCCCCchhHHHhC
Q 000286 102 TCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSY-LDFFSTGVQRVALSTAANMCKKLPSDAADFVME 180 (1720)
Q Consensus 102 p~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~l-Ld~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~ 180 (1720)
..++..|+...++-++..-+.++..-=.... ..++|..||.+ +...+..+.|.|+-+|.-+|...+..
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTg----nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~------- 589 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTG----NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ------- 589 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccC----chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-------
Confidence 3566688899999898877776654422221 13566777777 56678899999999999988765432
Q ss_pred cHHHHHHhhc-cCCHHHHHHHHHHHH
Q 000286 181 AVPLLTNLLQ-YHDAKVLEHASVCLT 205 (1720)
Q Consensus 181 ~lP~L~~LL~-~~D~~V~e~A~~aLs 205 (1720)
+|..+.+|. +-++.|.-.|..+|.
T Consensus 590 -~~s~V~lLses~N~HVRyGaA~ALG 614 (929)
T KOG2062|consen 590 -LPSTVSLLSESYNPHVRYGAAMALG 614 (929)
T ss_pred -chHHHHHHhhhcChhhhhhHHHHHh
Confidence 344455543 446777766665554
No 251
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=49.90 E-value=2.2e+02 Score=37.78 Aligned_cols=143 Identities=16% Similarity=0.144 Sum_probs=78.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcC----CcHHHHHHHHHHHHHhhcc--
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTI----EYMDLAEQSLQALKKISQE-- 130 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~----~~~dl~Eqal~aL~nIS~~-- 130 (1720)
.+..+.+++....-.. .+|+.++..++...+.....++ ..|. .|+.. ....+...|+-+++.+...
T Consensus 358 a~~~i~~~i~~~~~~~--~ea~~~~~~~~~~~~~Pt~~~l-----~~l~-~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c 429 (574)
T smart00638 358 ALKFIKQWIKNKKITP--LEAAQLLAVLPHTARYPTEEIL-----KALF-ELAESPEVQKQPYLRESALLAYGSLVRRYC 429 (574)
T ss_pred HHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhhcCCHHHH-----HHHH-HHhcCccccccHHHHHHHHHHHHHHHHHHh
Confidence 4555666665443111 3455555555544333333333 3444 44443 3567888889999888652
Q ss_pred --Ccc--hhhhcCchhHHhhhhcc----CChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc---cCCHHHHHH
Q 000286 131 --HPT--ACLRAGALMAVLSYLDF----FSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ---YHDAKVLEH 199 (1720)
Q Consensus 131 --~~~--~Il~~GgL~~LL~lLd~----~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~---~~D~~V~e~ 199 (1720)
.+. ..+....++.+...|.. .+...+..++.+|.|+-. ..+++.|..++. .....+...
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~ 499 (574)
T smart00638 430 VNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLA 499 (574)
T ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHH
Confidence 111 11222244444444432 233334456777777642 334566666665 224689999
Q ss_pred HHHHHHHHHhhcCCCHHHHHH
Q 000286 200 ASVCLTRIAEAFASSPDKLDE 220 (1720)
Q Consensus 200 A~~aLs~L~~~~~~~~~~~~~ 220 (1720)
|+|+|.+++.. .+..++.
T Consensus 500 Av~Alr~~a~~---~p~~v~~ 517 (574)
T smart00638 500 AILALRNLAKR---DPRKVQE 517 (574)
T ss_pred HHHHHHHHHHh---CchHHHH
Confidence 99999999875 4444433
No 252
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=49.54 E-value=1.6e+02 Score=39.44 Aligned_cols=117 Identities=10% Similarity=0.034 Sum_probs=60.0
Q ss_pred chhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCH----
Q 000286 140 ALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSP---- 215 (1720)
Q Consensus 140 gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~---- 215 (1720)
++..+..+|.+....-.. |.+.+..+......+....+..+++.+..-.-..++.+...|+.+++.|+..+....
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 455556666654443333 555566665554444444455444443332234567788889999999998754442
Q ss_pred --HHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHh
Q 000286 216 --DKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 262 (1720)
Q Consensus 216 --~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLa 262 (1720)
......+...+++.|...|..... .-+......+|++|+|+.
T Consensus 475 ~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~~~LkaLgN~g 518 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQELKEAVS-----RGDEEEKIVYLKALGNLG 518 (618)
T ss_dssp ------SS--GGGTHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHT
T ss_pred cccccchhhHHHHHHHHHHHHHHHhh-----ccCHHHHHHHHHHhhccC
Confidence 111222223466777776652100 014567888999999985
No 253
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=49.42 E-value=26 Score=38.26 Aligned_cols=113 Identities=15% Similarity=0.197 Sum_probs=73.3
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhc-CCCCHHHHHHHHHHHHHhhccCCc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLN-HESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~-~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
..+...+..+-.+.+.+..+.++..+..++-...+-.-..+..+|+++.++.++. ...+..+|..++.+|..-| ....
T Consensus 42 ~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~ 120 (157)
T PF11701_consen 42 EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKS 120 (157)
T ss_dssp HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHH
T ss_pred HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHH
Confidence 3455666665433334567778888877777643322246778999999999998 3335888888888886544 3433
Q ss_pred chhhhcccccHHHHHHHHhc-CCcHH-HHHHHHHHHHHh
Q 000286 91 SCAAVVHYGAVTCFVARLLT-IEYMD-LAEQSLQALKKI 127 (1720)
Q Consensus 91 ~~~~vV~~GaVp~Lv~kLL~-~~~~d-l~Eqal~aL~nI 127 (1720)
.+..+. ...++.|- ++.. .++.. ++..|+-+|.+|
T Consensus 121 ~r~~I~-~~~~~~L~-~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 121 CRTFIS-KNYVSWLK-ELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHCCH-HHCHHHHH-HHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHH-HHHHHHHH-HHHccccchHHHHHHHHHHHhcC
Confidence 444444 45688888 7774 45444 777777777664
No 254
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=48.13 E-value=4.1e+02 Score=30.68 Aligned_cols=181 Identities=15% Similarity=0.168 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHH-------hhcCC--CCHHH-HHHHHHHHHHhhccCCcchhhh
Q 000286 26 EEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVG-------LLNHE--SNPDI-MLLAARALTHLCDVLPSSCAAV 95 (1720)
Q Consensus 26 D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~-------lL~~~--~~~ei-q~~AaraLtNL~~~~p~~~~~v 95 (1720)
++..| |+.+|.+-......-.+..-...|+...|.+ +|+-. ++++. ..-.+-.|..+....|+....+
T Consensus 60 ~~kEq--aL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~F 137 (315)
T COG5209 60 NPKEQ--ALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVF 137 (315)
T ss_pred CHHHH--HHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheee
Confidence 45555 8888888887765443333334454333332 22211 11221 2222333344444567777778
Q ss_pred cccccHHHHHHHHhc-----CCcHHHHHHHHHHHHHhhccCcc----hhhhcCchhHHhhhhccCChHHHHHHHHHHHHh
Q 000286 96 VHYGAVTCFVARLLT-----IEYMDLAEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1720)
Q Consensus 96 V~~GaVp~Lv~kLL~-----~~~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1720)
+++. ||.++-..|. ....-++-.++.+++.+-.+... ..+....++.|+..++..+.-.|-.|+.++--+
T Consensus 138 l~Ah-iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qki 216 (315)
T COG5209 138 LDAH-IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKI 216 (315)
T ss_pred eecc-cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 8765 4443333333 23466777788888877766554 466788999999999988877788888887765
Q ss_pred ccCCC--------CchhHHHhCcHHHHHHhh-ccCCHHHHHHHHHHHHHHHh
Q 000286 167 CKKLP--------SDAADFVMEAVPLLTNLL-QYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 167 c~~~~--------~~~~~~v~~~lP~L~~LL-~~~D~~V~e~A~~aLs~L~~ 209 (1720)
..+.. .+.|..+..++..++..+ .....++++.++.|..++++
T Consensus 217 l~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 217 LGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 54322 234555666666666664 34467899999999999998
No 255
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=47.43 E-value=1.4e+02 Score=42.03 Aligned_cols=114 Identities=15% Similarity=0.095 Sum_probs=57.0
Q ss_pred CchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHH
Q 000286 139 GALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKL 218 (1720)
Q Consensus 139 GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~ 218 (1720)
.+++.++.+|+.....+++.|+.++.-+...........+..++-.|...|..-|. ...+..-+..+.+.+.-.++-.
T Consensus 208 ~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~ldd--l~~s~~si~~ll~~l~~~~evl 285 (1549)
T KOG0392|consen 208 LVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDD--LSSSTASIMHLLDELCIENEVL 285 (1549)
T ss_pred HHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhh--cchhhHHHHHHHHHHhhhHHHH
Confidence 45667777888888889999888887766644333333333444444444332222 2222222222222211122221
Q ss_pred HHHH----hCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhc
Q 000286 219 DELC----NHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 263 (1720)
Q Consensus 219 ~~li----~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas 263 (1720)
+... ..|+++++.-.+.+. =..+.-.++..+..+..
T Consensus 286 ~l~~~~n~~~~Lvp~~~p~l~~~---------i~sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 286 DLFEQQNLEVGLVPRLWPFLRHT---------ISSVRRAALETLAMLLE 325 (1549)
T ss_pred HHHHHhhhhhccchhhHHHHHHH---------HHHHHHHHHHHHHHHHh
Confidence 1111 237788877777664 12344555555555443
No 256
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.27 E-value=9.3e+02 Score=33.03 Aligned_cols=373 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCccc---ccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHH
Q 000286 32 EALTQLCEMLSIGTEESL---STFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARL 108 (1720)
Q Consensus 32 ~Al~~L~~lL~~~~~~~l---~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kL 108 (1720)
..+.++|+.....+-... ..+-.+..+.-.-+-|...+----...||-.+.-++.........|+. .-++.+
T Consensus 334 ~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-----~~v~~~ 408 (960)
T KOG1992|consen 334 NVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-----SEVQRL 408 (960)
T ss_pred HHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH-----HHHHHH
Q ss_pred hc------CCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHH------------HHHHhccCC
Q 000286 109 LT------IEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALS------------TAANMCKKL 170 (1720)
Q Consensus 109 L~------~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~------------aLsNlc~~~ 170 (1720)
|. +.+=.-.+-++....-|+.......-..-....++...+||...+...... ++-.+-...
T Consensus 409 l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR 488 (960)
T KOG1992|consen 409 LDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFR 488 (960)
T ss_pred HHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeec
Q ss_pred CCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC-----cHHHHHHhhcCCCCCCCCCC
Q 000286 171 PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG-----LVTQAATLISTSNSGGGQAS 245 (1720)
Q Consensus 171 ~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~g-----ll~~Lv~LL~~~~~~~~~~~ 245 (1720)
....-.+...++|.|...|..+..-|-..|+.|+-.|-.- ....-..++.++ +...+.+|..+-+..++ .
T Consensus 489 ~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~v---re~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~--~ 563 (960)
T KOG1992|consen 489 NQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTV---RENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK--A 563 (960)
T ss_pred ccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhcccc---ccCccccccchhhcchHHHHHHHHHHHhccCCcc--c
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCC
Q 000286 246 LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGT 325 (1720)
Q Consensus 246 ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~ 325 (1720)
=++-+...+.|+++.+=..--.....++. .|-+++....+..+....+ ..+.+-|+-++-
T Consensus 564 EneylmKaImRii~i~~~~i~p~~~~~l~-----~Lteiv~~v~KNPs~P~fn---------HYLFEsi~~li~------ 623 (960)
T KOG1992|consen 564 ENEYLMKAIMRIISILQSAIIPHAPELLR-----QLTEIVEEVSKNPSNPQFN---------HYLFESIGLLIR------ 623 (960)
T ss_pred ccHHHHHHHHHHHHhCHHhhhhhhhHHHH-----HHHHHHHHHhcCCCCchhH---------HHHHHHHHHHHH------
Q ss_pred CCCCccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 000286 326 ISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLS 405 (1720)
Q Consensus 326 ~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~ 405 (1720)
..++.+|..+..|...|+|++-.|++.- -.+.=-+++.
T Consensus 624 -----------------------------------------~t~~~~~~~vs~~e~aL~p~fq~Il~eD-I~EfiPYvfQ 661 (960)
T KOG1992|consen 624 -----------------------------------------KTCKANPSAVSSLEEALFPVFQTILSED-IQEFIPYVFQ 661 (960)
T ss_pred -----------------------------------------HHhccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_pred HHHHHhhcCCHHHHHHhhhccchHHHHHHHhh---cCCCchHHhHHHHHHHHHhhCchhhhhhHHhhcHHHHHHHHHhcC
Q 000286 406 VIGKLMYFSSAEMIQSLLSVTNISSFLAGVLA---WKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAG 482 (1720)
Q Consensus 406 ~l~r~v~~~~~~~L~~~l~~~~iss~la~il~---~~d~~lv~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~I~~L~~~~ 482 (1720)
.+.-+|..+....-. ++..++--+|+ |+-..-+-..+.+.+.++++-|.++...=+=.||+--.++|...+
T Consensus 662 lla~lve~~~~~ip~------~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSk 735 (960)
T KOG1992|consen 662 LLAVLVEHSSGTIPD------SYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASK 735 (960)
T ss_pred HHHHHHHhcCCCCch------hHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCc
No 257
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=47.06 E-value=1e+02 Score=33.11 Aligned_cols=111 Identities=11% Similarity=0.157 Sum_probs=79.7
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 000286 12 GRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSS 91 (1720)
Q Consensus 12 ~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~ 91 (1720)
+.+.++|+...++.....-.....++|+++.... .....++..|.+-|++. |+.+|+.|...|--++..+-..
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~------~~~k~a~ral~krl~~~-n~~vql~AL~LLe~~vkNCG~~ 75 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKD------VQPKYAMRALKKRLLSK-NPNVQLYALLLLESCVKNCGTH 75 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHCCHH
Confidence 4577888887665555666677788999987542 23556789999999886 6999999988887777655433
Q ss_pred hh-hhcccccHHHHHHHHhc-CCcHHHHHHHHHHHHHhhcc
Q 000286 92 CA-AVVHYGAVTCFVARLLT-IEYMDLAEQSLQALKKISQE 130 (1720)
Q Consensus 92 ~~-~vV~~GaVp~Lv~kLL~-~~~~dl~Eqal~aL~nIS~~ 130 (1720)
.+ .|.+.+.+..|+ +|+. .....|++.++..+..-+..
T Consensus 76 fh~evas~~fl~~l~-~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 76 FHDEVASREFMDELK-DLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHhhHHHHHHHH-HHHcccCCHHHHHHHHHHHHHHHHH
Confidence 33 466777788888 6665 45678888888777776643
No 258
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=46.96 E-value=85 Score=41.46 Aligned_cols=150 Identities=16% Similarity=0.161 Sum_probs=97.2
Q ss_pred cccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Q 000286 51 TFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1720)
Q Consensus 51 ~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1720)
.+....++|.|+.-|...+ .|.-.|+.+..........=.+.+++|.|+ +|..+.+.-++---|.=+.+....
T Consensus 288 ~i~~~kvlp~Ll~~~~~g~------a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~-kLF~~~Dr~iR~~LL~~i~~~i~~ 360 (690)
T KOG1243|consen 288 EIIASKVLPILLAALEFGD------AASDFLTPLFKLGKDLDEEEYQVRIIPVLL-KLFKSPDRQIRLLLLQYIEKYIDH 360 (690)
T ss_pred HHHHHHHHHHHHHHhhccc------cchhhhhHHHHhhhhccccccccchhhhHH-HHhcCcchHHHHHHHHhHHHHhhh
Confidence 3455556666666665443 233333333321111111114457899999 999999999998888888888777
Q ss_pred CcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 131 HPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 131 ~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
-...++..-.++.+..-+...+..+....+.++.-++...... ..-.+.+-.|..+-..++..+..+..-|+..|+.
T Consensus 361 Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 361 LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAP 437 (690)
T ss_pred cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeeccccc
Confidence 7778888888898888888778888877777777666544333 2233455555555445556677777777776665
No 259
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=46.76 E-value=1e+02 Score=30.19 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCHHHHHHhhhc--cchHHHHHHHhhcCCCchHHhHHHHHHH
Q 000286 379 FGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSV--TNISSFLAGVLAWKDPHVLIPSLQIAEI 453 (1720)
Q Consensus 379 f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r~v~~~~~~~L~~~l~~--~~iss~la~il~~~d~~lv~~aL~i~~~ 453 (1720)
|=+.+|-.+..+|.++.+.+||..+|.+|..|+...- +.| ++ ..+=+.|.......+..++..|.++++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~-~~i----~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG-ENI----KSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH-HHH----HhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 4467788899999999999999999999999997543 222 23 3444555555555678899999998864
No 260
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=46.37 E-value=1.4e+02 Score=33.58 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=83.7
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCC---------cccccccc---------cCcHHHHHHhhcCCCCHH
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTE---------ESLSTFSV---------DSFAPVLVGLLNHESNPD 72 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~---------~~l~~~~~---------~g~Vp~LV~lL~~~~~~e 72 (1720)
...-..|+..|-.|.++..+..|+..|+.+|..... ..-..|.. ..+=..|+..|+.|.++.
T Consensus 38 ~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~ 117 (182)
T PF13251_consen 38 RPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPP 117 (182)
T ss_pred CCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 344557788876666999999999999999987621 01011111 113346777778888889
Q ss_pred HHHHHHHHHHHhhccCCcchhhhcccccHHHHHH---HHhcCCcHHHHHHHHHHHHHhhcc
Q 000286 73 IMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVA---RLLTIEYMDLAEQSLQALKKISQE 130 (1720)
Q Consensus 73 iq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~---kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1720)
++.+.+.||..+..+.|-++- ..|.++.++. .++...+.+++..++.+++-+..-
T Consensus 118 ~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 118 VLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 999999999999999885543 3466555543 566778999999999999988654
No 261
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=46.36 E-value=73 Score=38.25 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=20.7
Q ss_pred chhHHhhhhccCChHHHHHHHHHHHHhccCCCCch
Q 000286 140 ALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDA 174 (1720)
Q Consensus 140 gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~ 174 (1720)
.++++|.++|+..+.++..++.++..+..+.+...
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 35666666666666666666666666665554443
No 262
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=46.31 E-value=78 Score=37.27 Aligned_cols=95 Identities=20% Similarity=0.205 Sum_probs=57.3
Q ss_pred HHHHHHHhhcCCC-HHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 14 LKKILSGLRADGE-EGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 14 l~~Ll~~L~s~~D-~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
+.+|-..|..... -+.+..|+-.||++ +++ ..|-+|++-|..+ +.-.+.+++.|++.|-+ |
T Consensus 156 v~~lr~~lld~t~~l~~Ry~amF~LRn~---g~E---------eaI~al~~~l~~~-SalfrhEvAfVfGQl~s--~--- 217 (289)
T KOG0567|consen 156 VHELRAELLDETKPLFERYRAMFYLRNI---GTE---------EAINALIDGLADD-SALFRHEVAFVFGQLQS--P--- 217 (289)
T ss_pred HHHHHHHHHhcchhHHHHHhhhhHhhcc---CcH---------HHHHHHHHhcccc-hHHHHHHHHHHHhhccc--h---
Confidence 4555555533222 35566666666542 222 3366667777665 46777788888877643 1
Q ss_pred hhhcccccHHHHHHHHhcC-CcHHHHHHHHHHHHHhhccCc
Q 000286 93 AAVVHYGAVTCFVARLLTI-EYMDLAEQSLQALKKISQEHP 132 (1720)
Q Consensus 93 ~~vV~~GaVp~Lv~kLL~~-~~~dl~Eqal~aL~nIS~~~~ 132 (1720)
-+||.|...|+.. +.+-++-.|+.||+-|+.+..
T Consensus 218 ------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 218 ------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred ------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 2677777555553 457777778888888877653
No 263
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=46.02 E-value=1.3e+02 Score=35.57 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc---------CCcchhhhcc
Q 000286 27 EGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDV---------LPSSCAAVVH 97 (1720)
Q Consensus 27 ~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~---------~p~~~~~vV~ 97 (1720)
++.++.++..++.++...+.+.+..+....+||-.+++|..+ +.--+..|..++..|... +++--.+|.
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~- 187 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVA- 187 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHH-
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHH-
Confidence 688999999999999877767777888999999999999977 366678898888777643 333333333
Q ss_pred cccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCc
Q 000286 98 YGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHP 132 (1720)
Q Consensus 98 ~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~ 132 (1720)
.++..++..|...+...+....++|.-.+|.+..
T Consensus 188 -~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 188 -MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp -HHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred -HHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 2566666677788889999999999999987655
No 264
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=44.76 E-value=1.6e+02 Score=39.83 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCC
Q 000286 248 TPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQ 323 (1720)
Q Consensus 248 ~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~ 323 (1720)
+..+..+|.+|+.+++..+-....|++..++..|..+|..+... --+...+..+.-|||.+|.
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~-------------~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSI-------------TVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccH-------------HHHHHHHHHHHHHhccccc
Confidence 45889999999999999999999999999999999999765431 1233445556778897654
No 265
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=43.38 E-value=1.2e+02 Score=34.13 Aligned_cols=73 Identities=26% Similarity=0.275 Sum_probs=57.7
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
-++.+++...+. |...++.|+.-+.-++..+ -+.+...+|.||.+..++ ++.+...|-..+..+.+-.+...
T Consensus 9 yl~~Il~~~~~~-~~~vr~~Al~~l~~il~qG------LvnP~~cvp~lIAL~ts~-~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 9 YLKNILELCLSS-DDSVRLAALQVLELILRQG------LVNPKQCVPTLIALETSP-NPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHHhcC------CCChHHHHhHhhhhhCCC-ChHHHHHHHHHHHHHHHHhHHHH
Confidence 466777766666 8999999999997777764 244567899999999886 69999999999999987665444
Q ss_pred h
Q 000286 93 A 93 (1720)
Q Consensus 93 ~ 93 (1720)
.
T Consensus 81 ~ 81 (187)
T PF12830_consen 81 E 81 (187)
T ss_pred H
Confidence 4
No 266
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=42.29 E-value=4.9e+02 Score=31.02 Aligned_cols=166 Identities=15% Similarity=0.175 Sum_probs=97.5
Q ss_pred HHH-HHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccc------cccccCcHHHHHHhhcCCC---CHHHHHHHHHHHHH
Q 000286 14 LKK-ILSGLRADGEEGKQVEALTQLCEMLSIGTEESLS------TFSVDSFAPVLVGLLNHES---NPDIMLLAARALTH 83 (1720)
Q Consensus 14 l~~-Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~------~~~~~g~Vp~LV~lL~~~~---~~eiq~~AaraLtN 83 (1720)
++. ++++|.+. ...-.++.-|.++....+++.+. .+..-+.+|.++.-+..+. ..+....+|..|..
T Consensus 65 lq~Ll~KGL~Ss---~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 65 LQPLLLKGLRSS---STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred HHHHHhCccCCC---CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 444 46678776 23334555666665555443321 1223346788888877654 01334477788888
Q ss_pred hhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC-cchhhhcCchhHHhhhhccCChHHHHHHHHH
Q 000286 84 LCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH-PTACLRAGALMAVLSYLDFFSTGVQRVALST 162 (1720)
Q Consensus 84 L~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~-~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~a 162 (1720)
+|+... ..-+-.++.......+.+..+=.-.+...|+... |+ .....+..++.+|.+...-+|+.++.+
T Consensus 142 ~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~--~~~~~l~~Ll~lL~n~~~w~~~~~L~i 211 (262)
T PF14225_consen 142 VAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD--HEFQILTFLLGLLENGPPWLRRKTLQI 211 (262)
T ss_pred HHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 885322 1223334435555555444433333444444322 22 123456678889998889999999999
Q ss_pred HHHhccCCCCchhHHHhCcHHHHHHhhccCC
Q 000286 163 AANMCKKLPSDAADFVMEAVPLLTNLLQYHD 193 (1720)
Q Consensus 163 LsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D 193 (1720)
+..+....+...- ...+.+..|.++|+.+-
T Consensus 212 L~~ll~~~d~~~~-~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 212 LKVLLPHVDMRSP-HGADLISPLLRLLQTDL 241 (262)
T ss_pred HHHHhccccCCCC-cchHHHHHHHHHhCCcc
Confidence 9998886544432 66778888888887653
No 267
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=41.44 E-value=2.5e+02 Score=36.33 Aligned_cols=160 Identities=14% Similarity=0.062 Sum_probs=106.2
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc--hhhhcCchhHHhhhhccCC----hHHHHHHHHHHHHhccCCCCch
Q 000286 101 VTCFVARLLTIEYMDLAEQSLQALKKISQEHPT--ACLRAGALMAVLSYLDFFS----TGVQRVALSTAANMCKKLPSDA 174 (1720)
Q Consensus 101 Vp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~--~Il~~GgL~~LL~lLd~~~----~~vqr~Al~aLsNlc~~~~~~~ 174 (1720)
+..+. .++......-+..++..|..++.+..- ..+...|+..+.+++...+ ..+...++.+++.+....- ..
T Consensus 85 a~~i~-e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIM-EILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHH-HHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 45566 344444444444499999999988763 6889999999999997543 3566667777766654211 11
Q ss_pred hHHHh-CcHHHHHHh--hccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHH
Q 000286 175 ADFVM-EAVPLLTNL--LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTY 251 (1720)
Q Consensus 175 ~~~v~-~~lP~L~~L--L~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~ 251 (1720)
+..+. .++-....+ .+-.|..+...|+..+-.++-+ ++...+.+.+.-.+..|+..|... +..++
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~---s~~~~~~v~eev~i~~li~hlq~~---------n~~i~ 230 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLG---SDTLRQLVAEEVPIETLIRHLQVS---------NQRIQ 230 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhC---ChHHHHHHHhcCcHHHHHHHHHhc---------chHHH
Confidence 11111 112222222 3445788999999999999987 788888888888999999999876 45677
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHH
Q 000286 252 TGLIRLLSTCASGS-PLCAKTLLH 274 (1720)
Q Consensus 252 ~~alr~L~nLas~s-~~~t~~Ll~ 274 (1720)
..++..|-.+.... ++-.+.+++
T Consensus 231 ~~aial~nal~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 231 TCAIALLNALFRKAPDDKRFEMAK 254 (713)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHH
Confidence 77888887776554 333344444
No 268
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=40.40 E-value=1e+02 Score=33.14 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=61.2
Q ss_pred HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHH
Q 000286 177 FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIR 256 (1720)
Q Consensus 177 ~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr 256 (1720)
.-++++-.|.+.|++.++.++-.|+..|-.++.+. ...-...+.+.+++..|+.++... ....++..++.
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNC--G~~fh~evas~~fl~~l~~l~~~~--------~~~~Vk~kil~ 107 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNC--GTHFHDEVASREFMDELKDLIKTT--------KNEEVRQKILE 107 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHC--CHHHHHHHhhHHHHHHHHHHHccc--------CCHHHHHHHHH
Confidence 35678999999999999999999999999888862 344556677778999999999753 26778888888
Q ss_pred HHHHHh
Q 000286 257 LLSTCA 262 (1720)
Q Consensus 257 ~L~nLa 262 (1720)
+|-.-+
T Consensus 108 li~~W~ 113 (142)
T cd03569 108 LIQAWA 113 (142)
T ss_pred HHHHHH
Confidence 887765
No 269
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.10 E-value=8.2e+02 Score=31.85 Aligned_cols=150 Identities=16% Similarity=0.197 Sum_probs=83.5
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCc----HHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSF----APVLVGLLNHESNPDIMLLAARALTHLCD 86 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~----Vp~LV~lL~~~~~~eiq~~AaraLtNL~~ 86 (1720)
.+.++-||+.++.. |++.|-.++..|.+++..++.......-+-.+ -+-|+++-..--.+..+..-|-+|.-|+-
T Consensus 46 k~dLellVeriqd~-d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl~~iydkw~~~n~K~~LaDilS~l~m 124 (881)
T COG5110 46 KGDLELLVERIQDP-DIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADILSALCM 124 (881)
T ss_pred cccHHHHHHHhhCC-ChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchHHHHHhhccCcchhhHHHHHHHHHee
Confidence 45788899999987 99999999999999998776432211111111 12233333211123333334444544443
Q ss_pred cCCcchh-----hhcccc----------cHHHHHHHH---------hcCC-cHHHHHHHHHHHHHhhccCcc-----hhh
Q 000286 87 VLPSSCA-----AVVHYG----------AVTCFVARL---------LTIE-YMDLAEQSLQALKKISQEHPT-----ACL 136 (1720)
Q Consensus 87 ~~p~~~~-----~vV~~G----------aVp~Lv~kL---------L~~~-~~dl~Eqal~aL~nIS~~~~~-----~Il 136 (1720)
...+... .-++.. -|..|.... .+.+ ..|..+-|+.++-..-.++.. .++
T Consensus 125 ~yse~~kh~sL~YRl~g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt~~l~l~ivpfflkHNaE~dAiDlL~ 204 (881)
T COG5110 125 VYSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGLEIVPFFLKHNAEFDAIDLLV 204 (881)
T ss_pred ecccccchhhHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhcchhhccCCchhHHHHHHHHHhHHHHhcccchHHHHHHH
Confidence 3222100 001111 122222111 1122 367888888888888776664 478
Q ss_pred hcCchhHHhhhhccCChHHHHHHHHHH
Q 000286 137 RAGALMAVLSYLDFFSTGVQRVALSTA 163 (1720)
Q Consensus 137 ~~GgL~~LL~lLd~~~~~vqr~Al~aL 163 (1720)
+-|+|..+++|.+. ...+|.++...
T Consensus 205 Evg~Iekv~~fVd~--~n~~RvclYl~ 229 (881)
T COG5110 205 EVGGIEKVLDFVDT--HNYNRVCLYLE 229 (881)
T ss_pred Hhcchhhhhhhhcc--cchhHHHHHHH
Confidence 89999999999984 34556655543
No 270
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=39.05 E-value=9.8e+02 Score=30.93 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHH
Q 000286 27 EGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVA 106 (1720)
Q Consensus 27 ~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~ 106 (1720)
-..+..|+.+|++.+..-.- -....++-.--.++..+...+++..+...|..+.......... .. -.+..
T Consensus 4 l~~R~~a~~~l~~~i~~~~~-----~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~-~R----~~fF~ 73 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPL-----SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGL-MR----AEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCc-----hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHH-HH----HHHHH
Confidence 36788999999998876432 1222345555566665555778877777777777655431111 10 11221
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhccCcc-hhhhcCchhHHhhhhc
Q 000286 107 RLLTIEYMDLAEQSLQALKKISQEHPT-ACLRAGALMAVLSYLD 149 (1720)
Q Consensus 107 kLL~~~~~dl~Eqal~aL~nIS~~~~~-~Il~~GgL~~LL~lLd 149 (1720)
.+......+--..-+.+|..++.++.+ .-++....+.++..|.
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLE 117 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHH
Confidence 233333333333445555555555444 3356667777777664
No 271
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=37.97 E-value=1.2e+02 Score=32.12 Aligned_cols=77 Identities=17% Similarity=0.119 Sum_probs=59.5
Q ss_pred HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHH
Q 000286 177 FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIR 256 (1720)
Q Consensus 177 ~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr 256 (1720)
..++++..|..-|++.++.++-.|+..|-.++.+. ......++.+.+++..|+.++.... ..+.++..++.
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNc--g~~f~~ev~s~~fl~~L~~l~~~~~-------~~~~Vk~kil~ 104 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNC--GSKFHLEVASKEFLNELVKLIKPKY-------PLPLVKKRILE 104 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CHHHHHHHHhHHHHHHHHHHHcCCC-------CcHHHHHHHHH
Confidence 45778999999999999999999999999999862 3445566667789999999997653 12337777777
Q ss_pred HHHHHh
Q 000286 257 LLSTCA 262 (1720)
Q Consensus 257 ~L~nLa 262 (1720)
++..-+
T Consensus 105 li~~W~ 110 (133)
T smart00288 105 LIQEWA 110 (133)
T ss_pred HHHHHH
Confidence 777654
No 272
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=37.37 E-value=4.5e+02 Score=31.75 Aligned_cols=71 Identities=20% Similarity=0.126 Sum_probs=53.8
Q ss_pred ccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000286 52 FSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1720)
Q Consensus 52 ~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1720)
.....+|..+++-|... +.+....|++||.||+-|.-..+. ...+|.-|+-.|.-
T Consensus 56 ~~~~~~i~~ll~~L~~~-~~~~R~~al~~LlYi~~G~~~~~~---------------------s~~~ql~~i~~N~~--- 110 (293)
T PF07923_consen 56 DQRKDFIEKLLDQLESS-DSEDRLEALRALLYIAQGTWGETA---------------------SEEEQLQWIRRNVF--- 110 (293)
T ss_pred hhHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCccccC---------------------CHHHHHHHHHHHHH---
Confidence 44667899999999876 488889999999999988754433 34555556655543
Q ss_pred cchhhhcCchhHHhhhhc
Q 000286 132 PTACLRAGALMAVLSYLD 149 (1720)
Q Consensus 132 ~~~Il~~GgL~~LL~lLd 149 (1720)
.+.+.|++++++.+|.
T Consensus 111 --lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 111 --LLYECGGFPALWELLK 126 (293)
T ss_pred --HHHHhhhhHHHHHHHH
Confidence 5778899999998886
No 273
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=36.15 E-value=91 Score=40.83 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=102.3
Q ss_pred cchHHHHHHHhhcC----CCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000286 11 SGRLKKILSGLRAD----GEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~----~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~ 86 (1720)
-+++..+|+.+-++ +|+..|+.|.-.|.++.+.+.+-+ ..-+|.|+..|....+|-+...|+-.|+-++-
T Consensus 890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc------~ehlpllIt~mek~p~P~IR~NaVvglgD~~v 963 (1128)
T COG5098 890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC------SEHLPLLITSMEKHPIPRIRANAVVGLGDFLV 963 (1128)
T ss_pred HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHhhCCCcceeccceeeccccce
Confidence 35778888887554 699999999999999998876532 23489999999855579999888877777664
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHh
Q 000286 87 VLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1720)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1720)
... ..++. .-..|. +=|.-.+.+|+..|+.++.++.-... +--.|-+..+...|+..+..+-..|-..+..+
T Consensus 964 cfN----~~~de-~t~yLy-rrL~De~~~V~rtclmti~fLilagq--~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098 964 CFN----TTADE-HTHYLY-RRLGDEDADVRRTCLMTIHFLILAGQ--LKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred ehh----hhhHH-HHHHHH-HHhcchhhHHHHHHHHHHHHHHHccc--eeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence 222 22221 123444 45566788999999999999864332 22346666777778887777777776667777
Q ss_pred ccC
Q 000286 167 CKK 169 (1720)
Q Consensus 167 c~~ 169 (1720)
+.+
T Consensus 1036 a~K 1038 (1128)
T COG5098 1036 AKK 1038 (1128)
T ss_pred Hhc
Confidence 664
No 274
>PRK14707 hypothetical protein; Provisional
Probab=35.42 E-value=2e+03 Score=33.52 Aligned_cols=204 Identities=18% Similarity=0.187 Sum_probs=115.2
Q ss_pred cchHHHHHHH-hhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000286 11 SGRLKKILSG-LRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 11 ~~~l~~Ll~~-L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p 89 (1720)
.++.-.|+.+ +....+...-.+|+..|..-+...+ .+++.+....+.-.|-.+-+.++|.+.+..|.+..+.++...
T Consensus 119 ~~~~~al~~n~~sk~~~~~~c~~a~a~i~~~~~~~~-~~~~~l~~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d- 196 (2710)
T PRK14707 119 GGYPSALFLNAFSKNLDSGRCERAVARLARHLRRED-KARQTLNAQNISLALNAFSKWSDNPDCQAVAPRFAALVASDD- 196 (2710)
T ss_pred cchhHHHHHHHHhcCCCchHHHHHHHHHHHHhcccc-chhhhhccccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCh-
Confidence 3444445554 4333467778888888888777543 223344444444444444567778899988888888777643
Q ss_pred cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHH-HhhccCcc-hhhhcCchhHHhhhhcc-CChHHHHHH-HHHHHH
Q 000286 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALK-KISQEHPT-ACLRAGALMAVLSYLDF-FSTGVQRVA-LSTAAN 165 (1720)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~-nIS~~~~~-~Il~~GgL~~LL~lLd~-~~~~vqr~A-l~aLsN 165 (1720)
...+. ++.-.|-.+++-+-.=++..-.++++.+|. -++.+..- .-++.-+|..+|+-|.. .+..+-++| .++.-.
T Consensus 197 ~~~~~-~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~r 275 (2710)
T PRK14707 197 RLRSA-MDAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAER 275 (2710)
T ss_pred hhhcc-cchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 23333 344556666656666665555556666664 44554332 45566677777777763 444444444 444445
Q ss_pred hccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHH-HHHhhcCCCHHHHHHH
Q 000286 166 MCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLT-RIAEAFASSPDKLDEL 221 (1720)
Q Consensus 166 lc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs-~L~~~~~~~~~~~~~l 221 (1720)
+.+.........-.++-..|..+-+..|..|...|...|. +|.+ +++..+.+
T Consensus 276 l~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~----d~~l~~~~ 328 (2710)
T PRK14707 276 LVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD----DPELCKAL 328 (2710)
T ss_pred HhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc----cHhhhhcc
Confidence 5543222222222344455555556778777766666554 4444 56655444
No 275
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=34.16 E-value=1.8e+02 Score=31.12 Aligned_cols=112 Identities=17% Similarity=0.255 Sum_probs=75.8
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 000286 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~ 90 (1720)
+..+..+|+...+...+..-..+..+||+++.... .....++..|.+=|++. ++.+|+.|...|-.++..+..
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~------~~~kea~~~l~krl~~~-~~~vq~~aL~lld~lvkNcg~ 75 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSP------DGAKEAARALRKRLKHG-NPNVQLLALTLLDALVKNCGP 75 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTST------THHHHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHHHSHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCC------ccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCCH
Confidence 45678888887655444445566678999888752 23456788899999885 799999999988888876633
Q ss_pred ch-hhhcccccHHHHHHHHhcC-CcHH---HHHHHHHHHHHhhcc
Q 000286 91 SC-AAVVHYGAVTCFVARLLTI-EYMD---LAEQSLQALKKISQE 130 (1720)
Q Consensus 91 ~~-~~vV~~GaVp~Lv~kLL~~-~~~d---l~Eqal~aL~nIS~~ 130 (1720)
.. ..|.....+..|. +|+.. .... |++.++..|..-+..
T Consensus 76 ~f~~ev~~~~fl~~l~-~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 76 RFHREVASKEFLDELV-KLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHTSHHHHHHHH-HHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHH-HHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 33 3455666777777 65554 3333 788888777666543
No 276
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.77 E-value=1.1e+02 Score=36.97 Aligned_cols=143 Identities=15% Similarity=0.158 Sum_probs=94.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhh
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACL 136 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il 136 (1720)
.+...+..|.++ +.+....+.--|.-++...++....... -+|..++ +=+......|...|+.|++-|.....+.|.
T Consensus 89 al~~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vv-kslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVV-KSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666655 3666666666666666655555554432 3566666 556677788999999999999887777677
Q ss_pred hcCchhHHhhhhcc---CChHHHH-HHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 137 RAGALMAVLSYLDF---FSTGVQR-VALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 137 ~~GgL~~LL~lLd~---~~~~vqr-~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
+ .+..++.+|-. .+-...| .|-.+|.-+.....+ ..+++.|...+++..+.+...+|.|+.+.+..
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccccccee
Confidence 6 56666665532 2323333 444455444433322 23678888889999999999999999988875
No 277
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.07 E-value=19 Score=45.22 Aligned_cols=64 Identities=5% Similarity=-0.177 Sum_probs=58.1
Q ss_pred chhhhcccchHHHHHHHhHHHHHhcCCCchHHHHhhccCCcccChhhHHHHHHhhhhchHHHHH
Q 000286 1211 YEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALY 1274 (1720)
Q Consensus 1211 ~~~f~~~klt~kl~rql~~~l~~~s~~lp~w~~~l~~~~pFlfpfe~R~~~f~~~~fg~~r~l~ 1274 (1720)
.-.+.+.+++++++++|..-++.--++.+.||.-.+-.+++.++++++..|-+.|.+++.|.-.
T Consensus 128 ~~~~~~vp~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~~ta 191 (621)
T KOG0170|consen 128 AMCKEIVPTSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFYSTA 191 (621)
T ss_pred hhhhcCCChHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999999999999999999999999999888654
No 278
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=32.53 E-value=1.4e+02 Score=32.04 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=66.7
Q ss_pred HHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCC
Q 000286 162 TAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGG 241 (1720)
Q Consensus 162 aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~ 241 (1720)
.+..+|....... ...++++-.|...|++.++.++-.|+..|-.++.+. .......+.+.+++..|+.++....
T Consensus 21 ~ileicD~In~~~-~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNC--G~~fh~evas~~Fl~el~kl~~~k~--- 94 (139)
T cd03567 21 AIQAFCEQINKEP-EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNC--GERFHSEVGKFRFLNELIKLVSPKY--- 94 (139)
T ss_pred HHHHHHHHHHcCC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CHHHHHHHHhHHHHHHHHHHhcccc---
Confidence 3445565222221 235678999999999999999999999999999863 3445567777889999999996420
Q ss_pred CCCCCChhHHHHHHHHHHHHh
Q 000286 242 GQASLSTPTYTGLIRLLSTCA 262 (1720)
Q Consensus 242 ~~~~ls~~i~~~alr~L~nLa 262 (1720)
........++..++.+|-.-+
T Consensus 95 ~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 95 LGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 011236778888888877655
No 279
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=32.50 E-value=76 Score=33.87 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=58.2
Q ss_pred HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCH-HHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChh--HHHH
Q 000286 177 FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSP-DKLDELCNHGLVTQAATLISTSNSGGGQASLSTP--TYTG 253 (1720)
Q Consensus 177 ~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~-~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~--i~~~ 253 (1720)
...+++..|.+-|.+.+++++..|+..+-.++.+ .. .....+.+..++..|+.++.... .... ++..
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkN---cg~~f~~ev~~~~fl~~l~~l~~~~~-------~~~~~~Vk~k 108 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKN---CGPRFHREVASKEFLDELVKLIKSKK-------TDPETPVKEK 108 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHH---SHHHHHHHHTSHHHHHHHHHHHHHTT-------THHHSHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHc---CCHHHHHHHhHHHHHHHHHHHHccCC-------CCchhHHHHH
Confidence 3577899999999999999999999999999986 44 44555566689999999998653 1222 6777
Q ss_pred HHHHHHHHh
Q 000286 254 LIRLLSTCA 262 (1720)
Q Consensus 254 alr~L~nLa 262 (1720)
++.+|..-+
T Consensus 109 ~l~ll~~W~ 117 (140)
T PF00790_consen 109 ILELLQEWA 117 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776554
No 280
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=32.16 E-value=2.4e+02 Score=40.70 Aligned_cols=124 Identities=19% Similarity=0.140 Sum_probs=83.2
Q ss_pred chhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHH
Q 000286 140 ALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLD 219 (1720)
Q Consensus 140 gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~ 219 (1720)
.|..++..|+...+.+.-+|+.||+++....+.. ..-.++-..+...+..+...|.+.|+-.+++-+-. .++.+.
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v--L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~---~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSV--LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS---IPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh--hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc---cHHHHH
Confidence 4555666667777888888999999987643211 11234555556667777788888888888877765 566555
Q ss_pred HHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000286 220 ELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1720)
Q Consensus 220 ~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1720)
... .++.+-+... +..++..+|++|.-||...|+... +.+++..+|...
T Consensus 892 qyY-----~~i~erIlDt---------gvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv 940 (1692)
T KOG1020|consen 892 QYY-----DQIIERILDT---------GVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRV 940 (1692)
T ss_pred HHH-----HHHHhhcCCC---------chhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHh
Confidence 554 3455555444 567999999999999988776543 344566666543
No 281
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=32.08 E-value=6.1e+02 Score=31.09 Aligned_cols=60 Identities=7% Similarity=0.153 Sum_probs=42.6
Q ss_pred HhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCC-CHHHHHHHHhC---CcHHHHHHhhcCC
Q 000286 178 VMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFAS-SPDKLDELCNH---GLVTQAATLISTS 237 (1720)
Q Consensus 178 v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~-~~~~~~~li~~---gll~~Lv~LL~~~ 237 (1720)
.+.++..+.--++|++.+|.+.++.++..|...+.. +++..+.+... .++..+...|..+
T Consensus 163 f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 163 FKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 455667777778999999999999999999887544 55666666654 3455555555443
No 282
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.96 E-value=8.5e+02 Score=33.52 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=48.2
Q ss_pred CCcHHHHHHHHHHHHHhhc--cCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccC
Q 000286 111 IEYMDLAEQSLQALKKISQ--EHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKK 169 (1720)
Q Consensus 111 ~~~~dl~Eqal~aL~nIS~--~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~ 169 (1720)
.+-+.++-+++..|..+.. .....+...+.+...+.+|.+.++-+--+|+..+.-+|.-
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev 798 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV 798 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh
Confidence 3446788899999999987 4444688899999999999988888888888888888864
No 283
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=30.53 E-value=1.2e+02 Score=31.26 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=51.2
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHH-HHHHHHHHHhhccC
Q 000286 56 SFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLA-EQSLQALKKISQEH 131 (1720)
Q Consensus 56 g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~-Eqal~aL~nIS~~~ 131 (1720)
-++|.+.+.|+....+|.|..|-..++.++.-.+ .+..++..|++.++........ .+++-+|..|++.+
T Consensus 6 ~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~------L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 6 RLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP------LSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 3578888888855578999888888888876443 3334566777677676665555 88999999998766
No 284
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=30.42 E-value=2.8e+02 Score=31.26 Aligned_cols=143 Identities=17% Similarity=0.138 Sum_probs=90.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHH-HHHHHHhhccCcchhh
Q 000286 58 APVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQS-LQALKKISQEHPTACL 136 (1720)
Q Consensus 58 Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqa-l~aL~nIS~~~~~~Il 136 (1720)
...+-.++..+ ..|.+..|+.++......... ..++.+-.-+-...+-++.... ..+++.+...+
T Consensus 53 ~~l~~~L~~~~-~~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~----- 118 (213)
T PF08713_consen 53 YELADELWESG-YREERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH----- 118 (213)
T ss_dssp HHHHHHHHCSS-CHHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-----
T ss_pred HHHHHHHcCCc-hHHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh-----
Confidence 33444455554 588888888887654422110 1234444222335556666554 44455553322
Q ss_pred hcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHH
Q 000286 137 RAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPD 216 (1720)
Q Consensus 137 ~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~ 216 (1720)
....+.+...+...+.-.+|.++-++...... .....++..+..++.+++.-|.....|+|..+... +++
T Consensus 119 -~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~---~~~ 188 (213)
T PF08713_consen 119 -PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK---DPD 188 (213)
T ss_dssp -GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT----HH
T ss_pred -HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh---CHH
Confidence 33556677777888888898888777766655 22345677777888899999999999999999985 787
Q ss_pred HHHHHHhC
Q 000286 217 KLDELCNH 224 (1720)
Q Consensus 217 ~~~~li~~ 224 (1720)
.....+..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777644
No 285
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=30.14 E-value=98 Score=34.65 Aligned_cols=55 Identities=13% Similarity=0.281 Sum_probs=40.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHhhcC-CHHHHHHhhhc
Q 000286 371 DQPELLQQFGMDLLPVLIQIYGSSVN----SPVRHKCLSVIGKLMYFS-SAEMIQSLLSV 425 (1720)
Q Consensus 371 ~~pe~~~~f~~~llP~L~~vy~ss~~----~~VR~~~L~~l~r~v~~~-~~~~L~~~l~~ 425 (1720)
..+.....+=+.|||+|+.||+-+-+ +.||+..|+.+.|-+.|. ..+.|..++..
T Consensus 116 ~~~~swr~lR~~I~~tLyaifqqsrG~~~~~kikNRtlrSlTRr~Lyh~~e~~l~r~l~d 175 (187)
T PF11081_consen 116 QEYRSWRELRNRIFPTLYAIFQQSRGNEQELKIKNRTLRSLTRRCLYHRGEDQLQRTLED 175 (187)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34555666668999999999976544 489999999998855554 44677777655
No 286
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=29.79 E-value=2.4e+02 Score=28.50 Aligned_cols=96 Identities=18% Similarity=0.118 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHH
Q 000286 28 GKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVAR 107 (1720)
Q Consensus 28 ~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~k 107 (1720)
++++-|+..+---+..+--..-+......++..|++.++.+..+ .+..+.-.|..++. .|.....+.+-|++..|- +
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~-~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~-k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVP-MKEEVLALLLRLLK-SPYAAQILRDIGAVRFLS-K 78 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHH-H
Confidence 35566666654444433111001234667899999999987633 66666667777665 455677788999999977 9
Q ss_pred HhcCCcHHHHHHHHHHHHH
Q 000286 108 LLTIEYMDLAEQSLQALKK 126 (1720)
Q Consensus 108 LL~~~~~dl~Eqal~aL~n 126 (1720)
|-..-.++++.++-..|.+
T Consensus 79 lr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHhcCCHHHHHHHHHHHhc
Confidence 9888888887776666554
No 287
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=29.20 E-value=8.1e+02 Score=30.05 Aligned_cols=214 Identities=19% Similarity=0.089 Sum_probs=106.5
Q ss_pred ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc
Q 000286 54 VDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133 (1720)
Q Consensus 54 ~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~ 133 (1720)
...++..|+.++..|.|......+..+|..-+... ..-+...++..+. +=+....+.++..-+.+++.+....++
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~-kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFK-KGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 34567777777777776666666666655444322 1223344566666 444445555777777777777652111
Q ss_pred ---hhhhcCchhHHhhhhcc----CChHHHHH----HHHHHHHhccCCCCchhHHHhCcH--------HH-H--HHhhcc
Q 000286 134 ---ACLRAGALMAVLSYLDF----FSTGVQRV----ALSTAANMCKKLPSDAADFVMEAV--------PL-L--TNLLQY 191 (1720)
Q Consensus 134 ---~Il~~GgL~~LL~lLd~----~~~~vqr~----Al~aLsNlc~~~~~~~~~~v~~~l--------P~-L--~~LL~~ 191 (1720)
.-.-...++.|++.++. .....|.. |...+. ++.. ............ |. | -++++.
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~-~~~~~~~~~~~~~~l~~~~kps~ll~~kvysk 172 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSW-KLDKIDSKNISFWSLALDPKPSFLLSEKVYSK 172 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccc-cchhhhhhhhhhhhhccCCCcchhcCHHHHhc
Confidence 22333466777777742 22222211 111111 1110 000000000000 00 0 011222
Q ss_pred -CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHH
Q 000286 192 -HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAK 270 (1720)
Q Consensus 192 -~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~ 270 (1720)
.+.+-..-.+.++..+... .+.....-....+-..++.++.+.. ++..++..|+.+|..+...++..
T Consensus 173 l~~~~d~~w~~~al~~~~~~---~~~~~~~~~~~~~~~a~i~ll~s~~-------~~~~vR~~A~~~l~~l~~~~~~~-- 240 (339)
T PF12074_consen 173 LASEEDLCWLLRALEALLSD---HPSELSSDKSSAWAQAFIYLLCSSN-------VSWKVRRAALSALKKLYASNPEL-- 240 (339)
T ss_pred cCCHhHHHHHHHHHHHHHhc---chhhhhhhHHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhChHH--
Confidence 2333333344455555543 2222211112235677888887763 46789999999999999988884
Q ss_pred HHHHcCChHHHHHhhcCC
Q 000286 271 TLLHLGISGILKDILSGS 288 (1720)
Q Consensus 271 ~Ll~~gil~~L~~LL~~~ 288 (1720)
+...++.-|...|...
T Consensus 241 --l~~~li~~l~~~l~~~ 256 (339)
T PF12074_consen 241 --LSKSLISGLWKWLSSS 256 (339)
T ss_pred --HHHHHHHHHHHHHHhc
Confidence 3333444566666543
No 288
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=29.17 E-value=5e+02 Score=38.39 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=92.7
Q ss_pred cCcHHHHHHhhc---CCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000286 55 DSFAPVLVGLLN---HESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1720)
Q Consensus 55 ~g~Vp~LV~lL~---~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1720)
..+.|.++.+.+ ...++.++..++-...++....... .+..+|..|+..+-.-...++ ..|+.+|..|+..+
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~----~qqeVv~~Lvthi~sg~~~ev-~~aL~vL~~L~~~~ 504 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSY----CQQEVVGALVTHIGSGNSQEV-DAALDVLCELAEKN 504 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HH----HHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccch----hHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHhcc
Confidence 345555555543 2346888888888888888766432 223356677734333333444 58899999999988
Q ss_pred cchhhh-cCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 000286 132 PTACLR-AGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAE 209 (1720)
Q Consensus 132 ~~~Il~-~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~ 209 (1720)
+..+.. +.-|..+|.+++.++..-.|....+++.++..........-.+..-.+.+.|.+.+.+.......+...++.
T Consensus 505 ~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~ 583 (1426)
T PF14631_consen 505 PSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIK 583 (1426)
T ss_dssp HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Confidence 875544 567788999999999999999999999988743322222233455556666889988776654444444443
No 289
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=29.14 E-value=1.7e+02 Score=31.64 Aligned_cols=69 Identities=6% Similarity=0.042 Sum_probs=56.8
Q ss_pred ccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc----hhhhcCchhHHhhhhcc-CChHHHHHHHHHHHHhcc
Q 000286 99 GAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT----ACLRAGALMAVLSYLDF-FSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 99 GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL~lLd~-~~~~vqr~Al~aLsNlc~ 168 (1720)
.|+.+|. +-+.+.++.++-+|+..|+.+..+++. .|.....+..|..++.. ....++..++..+-....
T Consensus 37 ~a~ral~-KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIM-KRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3677788 555678999999999999999999886 47777888888888876 678899988888887765
No 290
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=28.03 E-value=2.3e+02 Score=33.43 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHHHHhhccCcc--hhhhcCc--hhHHhhhhccC----ChHHHHHHHHHHHHhccC--CCCchhHHHhCc
Q 000286 112 EYMDLAEQSLQALKKISQEHPT--ACLRAGA--LMAVLSYLDFF----STGVQRVALSTAANMCKK--LPSDAADFVMEA 181 (1720)
Q Consensus 112 ~~~dl~Eqal~aL~nIS~~~~~--~Il~~Gg--L~~LL~lLd~~----~~~vqr~Al~aLsNlc~~--~~~~~~~~v~~~ 181 (1720)
.....+--++++|.|+-..... .++.... +..++..+... +..+|..+++.+.|++.. ....+.....++
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4677888899999999776543 3443332 33333333322 466777788888898761 111122223345
Q ss_pred HHHHHHh-hcc-CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHh
Q 000286 182 VPLLTNL-LQY-HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATL 233 (1720)
Q Consensus 182 lP~L~~L-L~~-~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~L 233 (1720)
+..+... ... .|++++--++.|+++++.. ++...+.....|+-..+...
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~---~~~~~~~~~~l~~~~~~~~~ 252 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSS---SDSAKQLAKSLDVKSVLSKK 252 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCC---SHHHHHHCCCCTHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhcc---ChhHHHHHHHcChHHHHHHH
Confidence 6666664 332 6999999999999999963 44444444444554444333
No 291
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=26.98 E-value=9.4e+02 Score=32.71 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=86.8
Q ss_pred cHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHh
Q 000286 100 AVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVM 179 (1720)
Q Consensus 100 aVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~ 179 (1720)
-|.-|+ .+|++.+..+.|++-..+--......+..+ +..|+.|. ..+.-+ .|+.+|+.+ ..|. -+
T Consensus 5 ~~~~l~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~y~--~~t~s~-~~~~il~~~--~~P~-----~K 69 (668)
T PF04388_consen 5 SITELL-SLLESNDLSVLEEIKALLQELLNSDREPWL----VNGLVDYY--LSTNSQ-RALEILVGV--QEPH-----DK 69 (668)
T ss_pred cHHHHH-HHhcCCchhhHHHHHHHHHHHhhccchHHH----HHHHHHHH--hhcCcH-HHHHHHHhc--CCcc-----HH
Confidence 456677 889999999999888877544332222122 22333331 112111 233444422 2222 23
Q ss_pred CcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHH
Q 000286 180 EAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLS 259 (1720)
Q Consensus 180 ~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~ 259 (1720)
..+..|...+... .-.-.++..|+.++.. .+..+..|+++.+++.|+.+|.... +..++..||-+|.
T Consensus 70 ~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~---qp~~l~~i~~t~Lf~~LLk~L~~D~--------~~~~~~~al~~Li 136 (668)
T PF04388_consen 70 HLFDKLNDYFVKP--SYRLQALTLLGHFVRS---QPPWLYKILQTPLFKSLLKCLQFDT--------SITVVSSALLVLI 136 (668)
T ss_pred HHHHHHHHHHcCc--hhHHHHHHHHHHHHhc---CCchHHHHhcChhHHHHHHHHhhcc--------cHHHHHHHHHHHH
Confidence 3566666666654 4455677888888885 8999999999999999999998864 6777888888887
Q ss_pred HHhc
Q 000286 260 TCAS 263 (1720)
Q Consensus 260 nLas 263 (1720)
.|.-
T Consensus 137 mlLP 140 (668)
T PF04388_consen 137 MLLP 140 (668)
T ss_pred HHhc
Confidence 7654
No 292
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=26.93 E-value=6.4e+02 Score=34.08 Aligned_cols=168 Identities=15% Similarity=0.105 Sum_probs=105.3
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcC-------CcHHHHHHHHHHHHHhhc
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTI-------EYMDLAEQSLQALKKISQ 129 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~-------~~~dl~Eqal~aL~nIS~ 129 (1720)
++.+-.++......+++ .|+++|.-+..-.++. .+ .|+++-+..-|-.+ .++--+|-|+..|.+|..
T Consensus 372 yirry~df~d~g~spdl--aal~fl~~~~sKrke~--Tf--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s 445 (970)
T COG5656 372 YIRRYYDFFDNGLSPDL--AALFFLIISKSKRKEE--TF--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS 445 (970)
T ss_pred HHHHhcchhcCCCChhH--HHHHHHHHHhcccchh--hh--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH
Confidence 34444444443333443 5677777665533322 12 38888888555232 223445667777777755
Q ss_pred ----cCcc-hhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000286 130 ----EHPT-ACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCL 204 (1720)
Q Consensus 130 ----~~~~-~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aL 204 (1720)
..+- .+++.=.++.++..+.....-.+..|+-+++.+ ..+.++.....++.....+++++++--|.-.|..|+
T Consensus 446 ~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~--eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAl 523 (970)
T COG5656 446 FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI--EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALAL 523 (970)
T ss_pred HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH--HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHH
Confidence 2221 366665666666666666666777888888877 445555566777888888888888888888899998
Q ss_pred HHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCC
Q 000286 205 TRIAEAFASSPDKLDELCNHGLVTQAATLISTS 237 (1720)
Q Consensus 205 s~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~ 237 (1720)
.-+... ++....+.+-+.+-+-+||.-+
T Consensus 524 q~fi~~-----~q~h~k~sahVp~tmekLLsLS 551 (970)
T COG5656 524 QFFIFN-----EQSHEKFSAHVPETMEKLLSLS 551 (970)
T ss_pred HHHHhc-----hhhhHHHHhhhhHHHHHHHHhc
Confidence 888763 2566666665666666666544
No 293
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.62 E-value=3.4e+02 Score=38.30 Aligned_cols=136 Identities=19% Similarity=0.174 Sum_probs=92.9
Q ss_pred cchHHHHHHHhh----cCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000286 11 SGRLKKILSGLR----ADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1720)
Q Consensus 11 ~~~l~~Ll~~L~----s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~ 86 (1720)
-+++-.+|..+- .-.||.+|..|.-+|+++.+.+.+- -..-+|.|+.+|....+|-+...+.-+|+-++-
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f------ces~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF------CESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 345666666553 2248999999999999988876431 234589999999866678888888888887776
Q ss_pred cCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHH
Q 000286 87 VLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVAL 160 (1720)
Q Consensus 87 ~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al 160 (1720)
.-|.-... --+.|- .-|.-+...+++.|+.+|.++.-. +.|---|.+.-+...|...+..+.--|=
T Consensus 991 ~fpnlie~-----~T~~Ly-~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 991 RFPNLIEP-----WTEHLY-RRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred hcccccch-----hhHHHH-HHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence 55533222 224455 566778899999999999998642 2444566676666666665555444333
No 294
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=26.53 E-value=5.1e+02 Score=29.06 Aligned_cols=129 Identities=14% Similarity=0.118 Sum_probs=81.1
Q ss_pred hhHHhhhhccCChHHHHHHHHHHHHhcc-CCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHH
Q 000286 141 LMAVLSYLDFFSTGVQRVALSTAANMCK-KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLD 219 (1720)
Q Consensus 141 L~~LL~lLd~~~~~vqr~Al~aLsNlc~-~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~ 219 (1720)
++.++...-..+..++..|+.++.-+.+ +.-.+ ..++|.|+.|..++++.+...|...+..|.+. .+..++
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK---~~s~v~ 81 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEK---HESLVE 81 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH---hHHHHH
Confidence 3445555556677888888888887776 32222 24899999999999999999999999999986 666666
Q ss_pred HHHhCCcHHHH--HHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcC
Q 000286 220 ELCNHGLVTQA--ATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSG 287 (1720)
Q Consensus 220 ~li~~gll~~L--v~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~ 287 (1720)
.-+..|+-... ...+.... ...........+..|-.++.++......++. .|...+..
T Consensus 82 ~~~~~gi~~af~~~~~l~~~~-----~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~-----~l~k~f~~ 141 (187)
T PF12830_consen 82 SRYSEGIRLAFDYQRRLSSDS-----RGARRGPPSAFLSRLYSLLRSNRKSRRKFLK-----SLLKQFDF 141 (187)
T ss_pred HHHHHHHHHHHHHHHHhcCCc-----cccccccchHHHHHHHHHHhcccHhHHHHHH-----HHHHHHHh
Confidence 66655533222 22222221 0001111556677777777766655555543 55555544
No 295
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=26.46 E-value=4.8e+02 Score=30.82 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=45.8
Q ss_pred hhcccccHHHHHHHHhcCCcH---HHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCC
Q 000286 94 AVVHYGAVTCFVARLLTIEYM---DLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKL 170 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~~---dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~ 170 (1720)
.....+++|.++..++..+.. .+...++..|-+|+.......- +......|-+|+.++.-+.+..
T Consensus 161 iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~------------~~~~d~~qVHAlNiLr~if~ds 228 (255)
T PF10350_consen 161 ITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHE------------DEKSDLPQVHALNILRAIFRDS 228 (255)
T ss_pred cccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCccccc------------ccccchHHHHHHHHHHHHHhcc
Confidence 455788999999888887664 6889999999999987654111 1111356777888887777643
No 296
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=25.70 E-value=1.4e+02 Score=37.26 Aligned_cols=124 Identities=17% Similarity=0.249 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhc------CCcHHHHHHHHHHHHHhhccCcch---hhhcCchhH
Q 000286 73 IMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLT------IEYMDLAEQSLQALKKISQEHPTA---CLRAGALMA 143 (1720)
Q Consensus 73 iq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~------~~~~dl~Eqal~aL~nIS~~~~~~---Il~~GgL~~ 143 (1720)
....|+-.|..++....+.+.. ++-..++.++. ..+-.-++.|+..++-||...... +-+.+.+-.
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~~-----i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVTS-----ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred cHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 4557888888888644333332 33344445544 345677888999999998754321 111111112
Q ss_pred Hhhhhc-----------cCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000286 144 VLSYLD-----------FFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCL 204 (1720)
Q Consensus 144 LL~lLd-----------~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aL 204 (1720)
+.+++. ...+-++..|++.+.-.-...+ -....+++|.|++.|.+++.-|...|+.||
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~---~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP---KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 222221 1223355568888876655433 246778999999999999998988888875
No 297
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=25.68 E-value=1.1e+03 Score=30.72 Aligned_cols=249 Identities=16% Similarity=0.137 Sum_probs=122.0
Q ss_pred HHHhhcCCCHHH-HHHHHHHHHHHHhcCCC------ccccc--cc--ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000286 18 LSGLRADGEEGK-QVEALTQLCEMLSIGTE------ESLST--FS--VDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1720)
Q Consensus 18 l~~L~s~~D~~~-ql~Al~~L~~lL~~~~~------~~l~~--~~--~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~ 86 (1720)
+.-+-.++.|.+ ++.|+..|-.++-.+.. +.+.. +. -..+|+.|.+++......-+|..|+|.|+++--
T Consensus 48 ~ki~laeg~ptm~~laa~~GlvaLvgse~~~iQlkse~~~ss~~q~~lnevir~ltqvis~sg~iglQsn~~wlLGhLhl 127 (589)
T PF11229_consen 48 IKIVLAEGCPTMQRLAALNGLVALVGSEGDLIQLKSEAIQSSQFQSRLNEVIRTLTQVISFSGVIGLQSNAAWLLGHLHL 127 (589)
T ss_pred HHHHHhcCCcHHHHHHHhhchhheeccccceeeehhhcccCHHHHHHHHHHHHHHHHHHcCccccccccchHHHHHHHHH
Confidence 444555667755 55666666444332211 11111 11 123788889998877678899999999988753
Q ss_pred c--CCcchhh--------hcccccHHHHHHHHhcCCc-------HHHHHHHHHHHHHhhccCcc----hhhhcCchhHHh
Q 000286 87 V--LPSSCAA--------VVHYGAVTCFVARLLTIEY-------MDLAEQSLQALKKISQEHPT----ACLRAGALMAVL 145 (1720)
Q Consensus 87 ~--~p~~~~~--------vV~~GaVp~Lv~kLL~~~~-------~dl~Eqal~aL~nIS~~~~~----~Il~~GgL~~LL 145 (1720)
. +..+.+. +=+.-.|-+.++.+.+... +.+.. -+|.-|+.-... -|-=+-.+.+++
T Consensus 128 s~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvk---vvl~~ia~vgeS~qyPPVNWaalLsPLM 204 (589)
T PF11229_consen 128 STLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVK---VVLKPIATVGESYQYPPVNWAALLSPLM 204 (589)
T ss_pred hhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHH---HHHHHhhhcCCCCCCCCccHHHHhhHHH
Confidence 2 2112111 1222334444433433321 22222 234444332111 011112344454
Q ss_pred hhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC
Q 000286 146 SYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG 225 (1720)
Q Consensus 146 ~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~g 225 (1720)
.+ +|..++|+.|+.+..-=|........-.-.=+.|.|..-|... +....+.-+.-.... -.+++++.+++.=
T Consensus 205 Rl--nfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~~---tk~~L~~Sl~~wmkh--VsedqiQ~Fve~l 277 (589)
T PF11229_consen 205 RL--NFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSVN---TKKYLFESLSLWMKH--VSEDQIQAFVENL 277 (589)
T ss_pred hc--cccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhHH---HHHHHHHHHHHHHhh--CCHHHHHHHHHHH
Confidence 44 5689999999887765554332222222233566666555443 333333344444442 2677888887642
Q ss_pred cHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHH--cCChHHHHHhhc
Q 000286 226 LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLH--LGISGILKDILS 286 (1720)
Q Consensus 226 ll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~Ll~--~gil~~L~~LL~ 286 (1720)
+++.+...+ +.-+++.+..+++-|..-. .-+.-.+.+-. |...+.|..+|-
T Consensus 278 ----~vq~F~~~~-----~~~~~~lC~saLqGLsqAM-KlP~P~~h~Ws~Lc~ttekIF~lLP 330 (589)
T PF11229_consen 278 ----MVQQFKAAS-----RPSNPELCQSALQGLSQAM-KLPSPAQHCWSLLCETTEKIFDLLP 330 (589)
T ss_pred ----HHHHHhhcC-----CCCChHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHHHHhCc
Confidence 333333221 1124667777777776632 22332333333 455555555553
No 298
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=24.79 E-value=3.3e+02 Score=28.76 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=60.7
Q ss_pred HHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHH-HHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHH
Q 000286 177 FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPD-KLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLI 255 (1720)
Q Consensus 177 ~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~-~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~al 255 (1720)
.-++++..|...|++.++.++..|+..|-.++.+ ... ....+.+...+..|+.++.... ..+..++..++
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkN---cg~~f~~~i~s~~fl~~l~~l~~~~~------~~~~~Vk~kil 104 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKN---CGKPFHLQVADKEFLLELVKIAKNSP------KYDPKVREKAL 104 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh---CChHHHHHHhhHHHHHHHHHHhCCCC------CCCHHHHHHHH
Confidence 3467899999999999999999999999999986 444 4455555588888999997631 24678888998
Q ss_pred HHHHHHhc
Q 000286 256 RLLSTCAS 263 (1720)
Q Consensus 256 r~L~nLas 263 (1720)
.+|..-+.
T Consensus 105 ~ll~~W~~ 112 (133)
T cd03561 105 ELILAWSE 112 (133)
T ss_pred HHHHHHHH
Confidence 88887653
No 299
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=24.57 E-value=5.4e+02 Score=33.05 Aligned_cols=121 Identities=16% Similarity=0.164 Sum_probs=78.9
Q ss_pred cCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhcc-CCHHHHHHHHHHHHHHHhhcCCC---HHHHHHHHhCC
Q 000286 150 FFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQY-HDAKVLEHASVCLTRIAEAFASS---PDKLDELCNHG 225 (1720)
Q Consensus 150 ~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~-~D~~V~e~A~~aLs~L~~~~~~~---~~~~~~li~~g 225 (1720)
.+..+++|.-...+..+|+..|.--....++++..+...-+. .-.++..+.||+++.=+...... .+.+...++.
T Consensus 279 ~y~~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~- 357 (459)
T PF14764_consen 279 QYQAEVRRVLSSQLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEA- 357 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHH-
Confidence 457789999999999999877765555566677777666433 35788999999999555432222 4555555543
Q ss_pred cHHHHHHhhcCCC--CCCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHH
Q 000286 226 LVTQAATLISTSN--SGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTL 272 (1720)
Q Consensus 226 ll~~Lv~LL~~~~--~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~~L 272 (1720)
++.+.--+.... ...+.+.-.+.+..-.+-+|+.||+.+.+.+-.+
T Consensus 358 -LE~llyE~~~~~~~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~pRv 405 (459)
T PF14764_consen 358 -LEALLYEVTQSRRDPSASRPSSQPRLMTVLMTALAKLASRSQDLIPRV 405 (459)
T ss_pred -HHHHHHHHhhccccccccCCCCchhHHHHHHHHHHHHHHhCHhhhHHH
Confidence 443333222211 1112334567788888899999999998887544
No 300
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=24.11 E-value=2.2e+02 Score=32.01 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=40.3
Q ss_pred HHHHHHHHhccC-CCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000286 158 VALSTAANMCKK-LPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEA 210 (1720)
Q Consensus 158 ~Al~aLsNlc~~-~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~ 210 (1720)
.|...+..+... ....-..++...++.|...|++.|++|...++.+|..|+..
T Consensus 57 lA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 57 LARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 344444555443 34445566778889999999999999999999999999774
No 301
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.96 E-value=1.1e+03 Score=32.87 Aligned_cols=213 Identities=14% Similarity=0.038 Sum_probs=0.0
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc-----CCc-chhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Q 000286 57 FAPVLVGLLNHESNPDIMLLAARALTHLCDV-----LPS-SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQE 130 (1720)
Q Consensus 57 ~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~-----~p~-~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~ 130 (1720)
+++.|++++.....+++|..|...|.-|+.. -|. -...++....|..|+..+|. ....+-.-+--....|+.-
T Consensus 191 li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~-~~~s~s~lVs~i~vlI~ll 269 (838)
T KOG2073|consen 191 LIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLE-DGTSLSVLVSGIIVLISLL 269 (838)
T ss_pred HHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHcc-CCcchhhHHHHHHHHHHhc
Q ss_pred CcchhhhcC--chhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHH------HHhhccCCHHHHHHHHH
Q 000286 131 HPTACLRAG--ALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLL------TNLLQYHDAKVLEHASV 202 (1720)
Q Consensus 131 ~~~~Il~~G--gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L------~~LL~~~D~~V~e~A~~ 202 (1720)
.+..-...+ ....+.+-..+.++.++-..+.++..-. .+|..+-..-|.. ...|.-.=.+-+...|.
T Consensus 270 ~~~r~~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L-----~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlki~e 344 (838)
T KOG2073|consen 270 NPRRDTVETNSTTTILSQPPSERDPIVLNELLGAMEPRL-----GDFVQLLLEPEKLDLLETTYGELEPPLGFERLKIVE 344 (838)
T ss_pred CcccccccccceeeeecCCccccCccchHHHHHHHHHHH-----HHHHHHhcCCccchhhhhhhhccCCCcchHHHHHHH
Q ss_pred HHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHh---------cCCHHHHHHHH
Q 000286 203 CLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA---------SGSPLCAKTLL 273 (1720)
Q Consensus 203 aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLa---------s~s~~~t~~Ll 273 (1720)
.++-+... .+....+++...+++.+++.+...-..+ +.--...-.-++.+++ +.+...++.++
T Consensus 345 liaelL~~--~~~~l~~el~~~~~~~r~lD~f~~y~~n------N~lh~~~e~~I~~~~~~~~~~~~~~s~~~~~v~~~l 416 (838)
T KOG2073|consen 345 LIAELLHC--SNMTLLNELRAEGIAERLLDLFFEYPWN------NFLHAQVESCIVENLSDETNNDSNISADNEIVDHLL 416 (838)
T ss_pred HHHHHhcc--CcHHHHhHHhhhhhHHHHHHHHHhcchh------HHHHHHHHHHHHHhhhccccccccCCCchHHHHHHH
Q ss_pred H-cCChHHHHH
Q 000286 274 H-LGISGILKD 283 (1720)
Q Consensus 274 ~-~gil~~L~~ 283 (1720)
. +.+...+..
T Consensus 417 ~~c~l~~~~l~ 427 (838)
T KOG2073|consen 417 QDCQLSDNILN 427 (838)
T ss_pred HHhhhhhhhhh
No 302
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=23.95 E-value=8.3e+02 Score=30.31 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhcc----------CCHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 000286 152 STGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQY----------HDAKVLEHASVCLTRIAEAFASSPDKLDEL 221 (1720)
Q Consensus 152 ~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~----------~D~~V~e~A~~aLs~L~~~~~~~~~~~~~l 221 (1720)
+....+..+.++..|..|....-...+...+|.+..+|-. +.-.+.+.|+..++.||..|......++.=
T Consensus 230 nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~r 309 (343)
T cd08050 230 NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPR 309 (343)
T ss_pred cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 4666777788888888876655556677789999888622 123788999999999999875543333222
Q ss_pred HhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHh
Q 000286 222 CNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 262 (1720)
Q Consensus 222 i~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLa 262 (1720)
++..+.+.|.... .+..++-.|+..|..+.
T Consensus 310 ----i~~tl~k~l~d~~-------~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 310 ----ITRTLLKALLDPK-------KPLTTHYGAIVGLSALG 339 (343)
T ss_pred ----HHHHHHHHHcCCC-------CCcchhhHHHHHHHHhC
Confidence 2334444444332 13334667777776653
No 303
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.64 E-value=2.7e+02 Score=38.34 Aligned_cols=105 Identities=11% Similarity=0.004 Sum_probs=79.5
Q ss_pred hhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHH
Q 000286 174 AADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTG 253 (1720)
Q Consensus 174 ~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~ 253 (1720)
...++.+++-.-..+|.+++..++-.|+-+++....-+...++.+-.++.. .=+.+++.+... ++-++..
T Consensus 797 qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq-~W~~vie~~~~k---------~~L~v~~ 866 (1014)
T KOG4524|consen 797 QVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQ-TWPSVIECLLCK---------DPLIVQR 866 (1014)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHh-hhhHHHHHHhcC---------chHHHHH
Confidence 344566777777788999999999999999987665544455555555533 456667777665 5779999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCC
Q 000286 254 LIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 288 (1720)
Q Consensus 254 alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~ 288 (1720)
|+.+|-+++..+.+-.+.=+-..++|.+..++...
T Consensus 867 a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 867 AFSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888777777788999999888743
No 304
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=23.18 E-value=2.3e+02 Score=29.17 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHh--------CCcHHHHHHhhcCC----CCCCCCCCCChhHHHHHHHHHH
Q 000286 192 HDAKVLEHASVCLTRIAEAFASSPDKLDELCN--------HGLVTQAATLISTS----NSGGGQASLSTPTYTGLIRLLS 259 (1720)
Q Consensus 192 ~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~--------~gll~~Lv~LL~~~----~~~~~~~~ls~~i~~~alr~L~ 259 (1720)
.+.++....+..|-.+|+| +....+..+. .++|..++.+|..- . . -..-...+...++.+|.
T Consensus 5 ~~~~~~~~ilr~LQLlCEg---hn~~lQnylR~Q~~~~~s~nlV~~~~~ll~~l~~~~~-~--~~~~~~~~~~q~~~tL~ 78 (109)
T PF08454_consen 5 QDMEIIQRILRFLQLLCEG---HNLDLQNYLRQQPNNKNSYNLVSETVDLLDSLQEFGK-D--INSDNIELIIQCFDTLT 78 (109)
T ss_pred HHHHHHHHHHHHHHHHHCc---CCHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHH-H--hhHHHHHHHHHHHHHHH
Confidence 3566778888889999998 4444444442 25777777777541 0 0 00123456778888888
Q ss_pred HHhcC-CHHHHHHHHHcCChHHHHHhhcC
Q 000286 260 TCASG-SPLCAKTLLHLGISGILKDILSG 287 (1720)
Q Consensus 260 nLas~-s~~~t~~Ll~~gil~~L~~LL~~ 287 (1720)
-++.| +.+....|.+..+++.+..+|..
T Consensus 79 E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 79 EFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred HHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 88999 88888999999999999998853
No 305
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=23.17 E-value=9.8e+02 Score=29.83 Aligned_cols=91 Identities=19% Similarity=0.119 Sum_probs=56.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcH-HHHHHHHHHHHHhhccCcchh-
Q 000286 58 APVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYM-DLAEQSLQALKKISQEHPTAC- 135 (1720)
Q Consensus 58 Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~-dl~Eqal~aL~nIS~~~~~~I- 135 (1720)
|.-+++=|.......++..++--|+.-+. .++.+..+..+|.+..+...+...+.. -+.--++.++.-++++....-
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 33444444433345666666666666554 678899999999999999555466555 334444445555566666533
Q ss_pred -hhcCchhHHhhhhc
Q 000286 136 -LRAGALMAVLSYLD 149 (1720)
Q Consensus 136 -l~~GgL~~LL~lLd 149 (1720)
.+.+.+..++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 35666666677776
No 306
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=23.11 E-value=1.3e+02 Score=32.31 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=39.8
Q ss_pred hcCCCchHHhHHHHHHHHHhhCchhhhhhHHhhcHHHHHHHHHh
Q 000286 437 AWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 480 (1720)
Q Consensus 437 ~~~d~~lv~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~I~~L~~ 480 (1720)
.+.++...+.||.+.+.+++.+...|+..+.+...++++-+|..
T Consensus 48 ~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~ 91 (139)
T cd03567 48 QSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVS 91 (139)
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhc
Confidence 45667778899999999999999999999999999999999985
No 307
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=22.97 E-value=2.4e+02 Score=35.04 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=51.8
Q ss_pred HHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhc
Q 000286 160 LSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIS 235 (1720)
Q Consensus 160 l~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~ 235 (1720)
...|..+|....... ..-+++|-.|.+.|++.|+.|+-.|+..+-.++.++ ..-...+|.+..+...|..|+.
T Consensus 26 W~~IlDvCD~v~~~~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NC--g~~~r~EVsSr~F~~el~al~~ 98 (462)
T KOG2199|consen 26 WSLILDVCDKVGSDP-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANC--GKRFRLEVSSRDFTTELRALIE 98 (462)
T ss_pred HHHHHHHHHhhcCCC-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc--chHHHHHHhhhhHHHHHHHHHh
Confidence 334556777554444 567889999999999999999999999998888863 2233445555556666666664
No 308
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.84 E-value=8.5e+02 Score=35.56 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=68.7
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p 89 (1720)
...++..++..|... |+..+..|+++|.+++...+.+.... .-+.++.++.=|-.+++..+.+..--++.++.....
T Consensus 39 ~dsel~~I~kkL~Kk-D~~TK~KaL~eL~eli~~~~~e~~~~--il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKR-DETTKIKALQELSELIDTSDTEELKG--ILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred cCHHHHHHHHHHhcc-ChHHHHHHHHhHHHhcccccchHHhh--hHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 566899999999887 99999999999999998776554322 122244444333344568999888888888876443
Q ss_pred cchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 000286 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128 (1720)
Q Consensus 90 ~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS 128 (1720)
.....-+. ..||... -=..-.+-.+++.|-.+...+-
T Consensus 116 k~lsp~LK-~li~~wl-~~~~d~~~~vs~aa~~sf~~~f 152 (1312)
T KOG0803|consen 116 KKLSPFLK-SLIPPWL-GGQFDLDYPVSEAAKASFKDGF 152 (1312)
T ss_pred HHhhHHHH-hhhhhhh-heecccchHHHHHHHHHHHhhc
Confidence 33222222 1233322 1111223455555555555543
No 309
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=22.67 E-value=1.5e+03 Score=27.83 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=94.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhc-cCCcchhhhccc--ccHHHHHHHHhcCCc-------------HHHHHHHH
Q 000286 58 APVLVGLLNHESNPDIMLLAARALTHLCD-VLPSSCAAVVHY--GAVTCFVARLLTIEY-------------MDLAEQSL 121 (1720)
Q Consensus 58 Vp~LV~lL~~~~~~eiq~~AaraLtNL~~-~~p~~~~~vV~~--GaVp~Lv~kLL~~~~-------------~dl~Eqal 121 (1720)
++.+.+.|+... ..++..|.+.|+.|.. .....+..|... --.+.|. +|+.... .+++...+
T Consensus 58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~-kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLP-KLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHH-HHhccccccccccccccccCcCHHHHHH
Confidence 777888888764 7888899999999998 554555555532 1234444 5554322 16666666
Q ss_pred HHHHHhhcc-Ccc---hhh-hcCchhHHhhhhccCChHHHHHHHHHHHH-hccCCCCch----hHHHhCcHHHHHHhhcc
Q 000286 122 QALKKISQE-HPT---ACL-RAGALMAVLSYLDFFSTGVQRVALSTAAN-MCKKLPSDA----ADFVMEAVPLLTNLLQY 191 (1720)
Q Consensus 122 ~aL~nIS~~-~~~---~Il-~~GgL~~LL~lLd~~~~~vqr~Al~aLsN-lc~~~~~~~----~~~v~~~lP~L~~LL~~ 191 (1720)
.-+-.+... ++. .++ +.+.+..++..|...+.++....+.++.. +.....-+. ...-..++..|..+...
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 655444433 332 344 44567778888888788888887777774 444322111 11224467778887777
Q ss_pred CCH----HHHHHHHHHHHHHHhh
Q 000286 192 HDA----KVLEHASVCLTRIAEA 210 (1720)
Q Consensus 192 ~D~----~V~e~A~~aLs~L~~~ 210 (1720)
.++ .+.+.+-..|..+|..
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcC
Confidence 777 7777777777777753
No 310
>PRK14707 hypothetical protein; Provisional
Probab=22.59 E-value=3.1e+03 Score=31.68 Aligned_cols=383 Identities=15% Similarity=0.132 Sum_probs=204.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCA 93 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~ 93 (1720)
+-.+++.|..=.|...-..|+..|..-|.... .....+...|+--.|-.+-+.++ ..+...|+-+|.--....++-+.
T Consensus 375 ~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~-~l~~~~~~Q~van~lnalsKWPd-~~~C~~aa~~lA~~la~d~~l~~ 452 (2710)
T PRK14707 375 VSSVLNALSKWPDTPVCAAAASALAEHVVDDL-ELRKGLDPQGVSNALNALAKWPD-LPICGQAVSALAGRLAHDTELCK 452 (2710)
T ss_pred HHHHHhhhhcCCCchHHHHHHHHHHHHhccCh-hhhhhcchhhHHHHHHHhhcCCc-chhHHHHHHHHHHHHhccHHHHh
Confidence 45566777433366777788888888888532 22356777777777766667775 67777787777766665555554
Q ss_pred hhcccccHHHHHHHHhcCCcHHHHHHHHHHHH-HhhccCc-chhhhcCchhHHhhhhccC-C-hHHHHHHHHHHHHhccC
Q 000286 94 AVVHYGAVTCFVARLLTIEYMDLAEQSLQALK-KISQEHP-TACLRAGALMAVLSYLDFF-S-TGVQRVALSTAANMCKK 169 (1720)
Q Consensus 94 ~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~-nIS~~~~-~~Il~~GgL~~LL~lLd~~-~-~~vqr~Al~aLsNlc~~ 169 (1720)
.+--.++... ++-|-.=++..+..+++.+|. .|+.+.. ..-++.-.+..+|+-|..+ + ...-..+.|+...+...
T Consensus 453 ~~~p~~va~~-LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~ 531 (2710)
T PRK14707 453 ALDPINVTQA-LDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDE 531 (2710)
T ss_pred hcChHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccc
Confidence 4332333333 336666677777767776663 4443322 1223333444455555432 2 34445566776666653
Q ss_pred CCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChh
Q 000286 170 LPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTP 249 (1720)
Q Consensus 170 ~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~ 249 (1720)
.........+++.-.|..+-++++....+.+...|..... ..+.....+ +.-=|..+++-|+-= + ...
T Consensus 532 ~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~---~~~~~~~~L-~aq~Vs~llNaLSKW------P--~~~ 599 (2710)
T PRK14707 532 LQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLA---DEPQLPKDL-HRQGVVIVLNALSKW------P--DTA 599 (2710)
T ss_pred hhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhh---cchhhHHhh-hhhHHHHHHHhhccC------C--CcH
Confidence 3333332344555566666677887777766655554433 244333333 333344555555421 1 122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHhhcCCCcccccccccccCCCHHHHHHHHHHhhccCCCCCCCCCCCC
Q 000286 250 TYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLP 329 (1720)
Q Consensus 250 i~~~alr~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L~~~~~s~~ 329 (1720)
.+..++..|.--+...+.....+-..+ +..+|++- +.|..+. -.++. +..
T Consensus 600 aC~~Aa~~LA~~l~~~~~lr~~l~~q~----lan~lNAL---SKWP~s~----~C~~A--a~r----------------- 649 (2710)
T PRK14707 600 VCAEAVNALAERLVDEPDLRKELDPVD----VTNVLNAL---SKWPGTE----VCAEV--ARL----------------- 649 (2710)
T ss_pred HHHHHHHHHHHHhccChhhhhhccHHH----HHHHHhhh---hcCCCch----HHHHH--HHH-----------------
Confidence 344444434333333333222211111 11112111 1222110 00000 000
Q ss_pred ccccccccCCcccCCCCCCCCCCCCCCCCccchhhHHHhhccCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 000286 330 SSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGK 409 (1720)
Q Consensus 330 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llP~L~~vy~ss~~~~VR~~~L~~l~r 409 (1720)
-...+..++.....|-..=++.+++.++...+..+++.....|..
T Consensus 650 -----------------------------------LA~rl~~~~~l~~~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~ 694 (2710)
T PRK14707 650 -----------------------------------LAGRLVGDRLLRKTFNSLDVANALNALSKWPDTPVCAAAAGGMAE 694 (2710)
T ss_pred -----------------------------------HHHHhhhchhhHhhcchHHHHHHHHhhhcCCCchHHHHHHHHHHH
Confidence 011123344556667777789999999999999999988888865
Q ss_pred HhhcCCHHHHHHhhhccchHHHHHHHhhcCC-CchHHhHHHHHHHHHhhCchhhhhhHHhhcHHHHHHHHHh
Q 000286 410 LMYFSSAEMIQSLLSVTNISSFLAGVLAWKD-PHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 480 (1720)
Q Consensus 410 ~v~~~~~~~L~~~l~~~~iss~la~il~~~d-~~lv~~aL~i~~~Ll~K~pd~f~~~f~REGV~~~I~~L~~ 480 (1720)
.+- ....|..-+..+.++..|-.+=-+.+ +..-..|..|+.-|... |+ -...|.--+|-..++.|++
T Consensus 695 rLa--~~~~Lr~al~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL~~~-p~-l~~a~~aQevANaLNALSK 762 (2710)
T PRK14707 695 RLA--ADPGLRKELNPVDVANALNALSKWPRTPVCAAVASALAARVVAE-PR-LRKAFDAQQVATALNALSK 762 (2710)
T ss_pred HHh--cChhhHhhcCHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhcC-hh-hhhhcCHHHHHHHHHHhhc
Confidence 533 23444455666677666666544444 55556666777766432 22 2345666777777777765
No 311
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=22.16 E-value=1.4e+03 Score=28.74 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=31.2
Q ss_pred chhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhc
Q 000286 140 ALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQ 190 (1720)
Q Consensus 140 gL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~ 190 (1720)
++.+-+.+.+..+..+.|.|+.-+=-+|.+ +....+.+.|+.||+
T Consensus 62 a~da~~d~~ed~d~~ir~qaik~lp~fc~~------d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 62 AIDAQLDLCEDDDVGIRRQAIKGLPLFCKG------DALSRVNDVLVQLLN 106 (460)
T ss_pred HHHhhhccccccchhhHHHHHhccchhccC------chhhhhHHHHHHHHH
Confidence 445556666677788888888888888876 234456666777665
No 312
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=22.04 E-value=2.5e+02 Score=34.36 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=72.3
Q ss_pred cCcHHHHHHhhcCC---CCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccC
Q 000286 55 DSFAPVLVGLLNHE---SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEH 131 (1720)
Q Consensus 55 ~g~Vp~LV~lL~~~---~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~ 131 (1720)
..++-.|+.++-.. +..++...|+.|+..++..+++....+++. +||.-- .....+.....+.+|-....+.
T Consensus 33 ~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~-~i~~~~----~~~~~~~~~nl~~~Ll~~~~~~ 107 (312)
T PF04869_consen 33 VPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLST-LIPSYA----SGNSDDPIANLLTALLDYDSDL 107 (312)
T ss_dssp EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHT-TSSTT------SS--SSSS-HHHHHT------
T ss_pred ccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHH-HhccCC----CCcccchhhHHHHHHHHhhccc
Confidence 34555666655443 368899999999999999887666655531 222111 0000000111222222211110
Q ss_pred cchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhh----c-cCCHHHHHHHHHHHHH
Q 000286 132 PTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLL----Q-YHDAKVLEHASVCLTR 206 (1720)
Q Consensus 132 ~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL----~-~~D~~V~e~A~~aLs~ 206 (1720)
...-.+.---..++.++=..+.+.+..++.+- ........+ ....+..+..+| . ..|+.+...-+..|+.
T Consensus 108 ~~dpy~~wfAa~il~hll~dn~~~Ke~al~V~-~~~~~~ge~----~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~ 182 (312)
T PF04869_consen 108 SLDPYRCWFAAVILMHLLRDNPEAKEQALRVT-EGDESSGEE----PVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIV 182 (312)
T ss_dssp SS-HHHHHHHHHHHHHHHTT-HHHHHHHTT---EE--STTS------EEHHHHHHHHTTT----T--HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHHHHccc-CCCCCCCCC----cccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Confidence 00000000001111122122333333333331 111111111 112344455443 2 4577777766666665
Q ss_pred HHhhcCCCHHHHHHHHhCC-cHHHHHHhhcCC
Q 000286 207 IAEAFASSPDKLDELCNHG-LVTQAATLISTS 237 (1720)
Q Consensus 207 L~~~~~~~~~~~~~li~~g-ll~~Lv~LL~~~ 237 (1720)
-.-+ ++.....+++.+ -++.|++.....
T Consensus 183 WL~e---~p~AV~~FL~~~s~l~~Li~~~~~~ 211 (312)
T PF04869_consen 183 WLFE---CPDAVNDFLSEGSNLQSLIEFSNQS 211 (312)
T ss_dssp HHTT----HHHHHHHHCSTTHHHHHHHHHS--
T ss_pred HHhC---CHHHHHHHHcCcchHHHHHHHhhcC
Confidence 5554 899999999875 889999985443
No 313
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.84 E-value=6.9e+02 Score=33.48 Aligned_cols=183 Identities=16% Similarity=0.200 Sum_probs=104.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch-----hhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcc
Q 000286 59 PVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC-----AAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT 133 (1720)
Q Consensus 59 p~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~-----~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~ 133 (1720)
|.|.+-|+-. |.++|..|+-.+.++.-...+.. ..+++. --..|. +||+.++++++-.|+.-+.++....=
T Consensus 177 p~l~R~L~a~-Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~-~LL~d~~p~VRS~a~~gv~k~~s~fW- 252 (1005)
T KOG1949|consen 177 PILWRGLKAR-NSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELY-SLLEDPYPMVRSTAILGVCKITSKFW- 252 (1005)
T ss_pred HHHHHhhccC-chhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHH-HHhcCCCchHHHHHHHHHHHHHHHHH-
Confidence 3344444433 79999999999999874332222 223331 223444 99999999999988888887754321
Q ss_pred hhhhcCchhHHhhhh----ccCChHHHHHH-HHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000286 134 ACLRAGALMAVLSYL----DFFSTGVQRVA-LSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIA 208 (1720)
Q Consensus 134 ~Il~~GgL~~LL~lL----d~~~~~vqr~A-l~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~ 208 (1720)
.++-...+.-++.++ .+.+..-.|.+ ...+-.+..+ | ......+..+|.|-..|+....+|...+...|.+|-
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p-~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-P-LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-c-cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 122233344444444 23333333332 3333333332 2 233456778899999999888999988888888876
Q ss_pred hhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHh
Q 000286 209 EAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 262 (1720)
Q Consensus 209 ~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLa 262 (1720)
+- ..-....++. ...++.-|... +..+....++.|-+++
T Consensus 331 ~v---ra~~f~~I~~---~d~~l~~L~~d---------~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 331 AV---RAAKFWKICP---MDHILVRLETD---------SRPVSRRLVSLIFNSF 369 (1005)
T ss_pred hh---hhhhhhcccc---HHHHHHHHhcc---------ccHHHHHHHHHHHHhh
Confidence 63 3333333332 33344444333 3445555555555554
No 314
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=21.70 E-value=3.9e+02 Score=27.93 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCCHHHHHHHHHHH
Q 000286 153 TGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCL 204 (1720)
Q Consensus 153 ~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D~~V~e~A~~aL 204 (1720)
..+...++.++..++...+...+. ..+.++.+.++|+++ .+.+.|+-||
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~-~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELII-NSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHH-SSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhc-cHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 567777888888877744433322 245888888888444 3467777665
No 315
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=21.46 E-value=8.8e+02 Score=28.91 Aligned_cols=59 Identities=25% Similarity=0.360 Sum_probs=35.8
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCD 86 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~ 86 (1720)
.++.|...|+.+ |+... .....|++ ..+....+||.|+..=. ++.+...+++.|.||+-
T Consensus 14 ~LkdL~r~lr~d-d~~~~-~v~r~lg~----------~~iv~~DLiPiL~~~~~---~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 14 CLKDLKRFLRRD-DEDQR-DVRRQLGE----------WNIVQKDLIPILISYKD---DDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHh-CcchH-HHHHHHHH----------hchhhhhHHHHHHhccC---chHHHHHHHHHHHHhCC
Confidence 456666666655 44433 22222221 12555667777665533 68899999999999873
No 316
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=21.45 E-value=1.8e+02 Score=34.28 Aligned_cols=99 Identities=15% Similarity=0.091 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHhhccCCcchhhhcccc--cHHHHHHHHhcCC---cHHHHHHHHHHHHHhhccCc----chhhhcC
Q 000286 69 SNPDIMLLAARALTHLCDVLPSSCAAVVHYG--AVTCFVARLLTIE---YMDLAEQSLQALKKISQEHP----TACLRAG 139 (1720)
Q Consensus 69 ~~~eiq~~AaraLtNL~~~~p~~~~~vV~~G--aVp~Lv~kLL~~~---~~dl~Eqal~aL~nIS~~~~----~~Il~~G 139 (1720)
.++..++.++|+|+|+....+ .+..+..+. .|...+..+.... +..++-.+...+-|+|.-.. ..-.+..
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 468889999999999997543 444444433 3444442343433 78889999999999975321 1111222
Q ss_pred chhHHhhhhc--cCChHHHHHHHHHHHHhcc
Q 000286 140 ALMAVLSYLD--FFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 140 gL~~LL~lLd--~~~~~vqr~Al~aLsNlc~ 168 (1720)
.+..++..+. ..+.++.-.++-++.|++.
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 3455555332 2578888899999999984
No 317
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=21.25 E-value=2.4e+02 Score=29.84 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=56.4
Q ss_pred ccchHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCccc-ccccccCcHHHHHHhhcC--CCCHHHHHHHHHHHHHhhc
Q 000286 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESL-STFSVDSFAPVLVGLLNH--ESNPDIMLLAARALTHLCD 86 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l-~~~~~~g~Vp~LV~lL~~--~~~~eiq~~AaraLtNL~~ 86 (1720)
....++.|-..|++. +|..|+.|+.-|-.+..++. .++ ..+....|+-.|+.++.. ..+++++..+...|.+...
T Consensus 35 ~k~a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg-~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 35 PKEAARAIRKKIKYG-NPHVQLLALTLLELLVKNCG-KPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCC-hHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 345677788888886 99999999998855555553 434 445556888899999975 3467888888777777665
Q ss_pred cCC
Q 000286 87 VLP 89 (1720)
Q Consensus 87 ~~p 89 (1720)
..+
T Consensus 113 ~f~ 115 (133)
T cd03561 113 SFG 115 (133)
T ss_pred Hhc
Confidence 443
No 318
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=21.21 E-value=1.5e+03 Score=28.77 Aligned_cols=138 Identities=14% Similarity=0.077 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhccCCCCchhHHHhCcHHHHHHhhccCC
Q 000286 114 MDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHD 193 (1720)
Q Consensus 114 ~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~~~~~~~~~~v~~~lP~L~~LL~~~D 193 (1720)
.-.+.+|+.++.-++++... |. -+.+.-..+++.+++.+..+..... ...|
T Consensus 60 ~t~~v~~LetvrILSRdk~~-------L~-------~~~~~q~~~~ll~~A~ls~~e~sl~---------------~v~d 110 (532)
T KOG4464|consen 60 LTHRVVCLETVRILSRDKDG-------LE-------PLTNDQLCQKLLALAELSSNENSLP---------------TVAD 110 (532)
T ss_pred chhhhhHHHHHHHHhccccc-------cc-------cccchHHHHHHHHHHHhccccCCCC---------------cccc
Confidence 45566788888888876541 11 1111222234444555544321111 1245
Q ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCC-HHHHHHH
Q 000286 194 AKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS-PLCAKTL 272 (1720)
Q Consensus 194 ~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s-~~~t~~L 272 (1720)
..|+-.++.||+|++-. ++...+......++.++.+.+....-. .....+..-=+|.|--+..-. +..++.+
T Consensus 111 ~~vi~EslKCLcNlvf~---Sq~~q~~~~~~~~~~~ll~~v~~~~er----~~~~~~~~~dlrLLflltale~~~Rsql~ 183 (532)
T KOG4464|consen 111 MHVIMESLKCLCNLVFH---SQRAQDLFLENPLTGKLLQRVLGEFER----NFPKDSSIFDLRLLFLLTALETDHRSQLI 183 (532)
T ss_pred hHHHHHHHHHHHHHHhc---cHHHHHHHHhhhhHHHHHHHHHHHHHh----cCCccchhhHHHHHHHHHHhhHHHHHHHH
Confidence 67888899999999984 777777777777777777776432100 001122333455554444333 4445556
Q ss_pred HHcCChHHHHHhhcC
Q 000286 273 LHLGISGILKDILSG 287 (1720)
Q Consensus 273 l~~gil~~L~~LL~~ 287 (1720)
.+.+.++.+.++|..
T Consensus 184 ~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 184 AELLGLELLTNWLED 198 (532)
T ss_pred HHhcccHHHHHHhhc
Confidence 668888888887764
No 319
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=21.09 E-value=2.2e+03 Score=29.52 Aligned_cols=240 Identities=18% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcC--CCcccccccccC-----------------------------cHHHHH
Q 000286 14 LKKILSGLRADGEEGKQVEALTQLCEMLSIG--TEESLSTFSVDS-----------------------------FAPVLV 62 (1720)
Q Consensus 14 l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~--~~~~l~~~~~~g-----------------------------~Vp~LV 62 (1720)
++.||...... -....++|+..|.+++..+ .++.+..|.... ||..|.
T Consensus 232 lEtLls~c~KK-sk~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~ly~rfievLe 310 (988)
T KOG2038|consen 232 LETLLSSCKKK-SKRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWYFEHELKILYFRFIEVLE 310 (988)
T ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcch-hhhcCch
Q 000286 63 GLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTA-CLRAGAL 141 (1720)
Q Consensus 63 ~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~-Il~~GgL 141 (1720)
.+-.+.- +++...|...+++|..+-|++-..++. .|| .=+..+.-.++-.|...|++|.+.||++ ++-.+.|
T Consensus 311 ~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~LL~-----~lV-NKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi~EI 383 (988)
T KOG2038|consen 311 ELSKDPL-EEVKKRALKTIYDLLTNKPEQENNLLV-----LLV-NKLGDPQNKIASKASYLLEGLLAKHPNMKIVVIDEI 383 (988)
T ss_pred HHccccH-HHHHHHHHHHHHHHHhCCcHHHHHHHH-----HHH-HhcCCcchhhhhhHHHHHHHHHhhCCcceeehHHHH
Q ss_pred hHHhhhhccCChHHHHHHHHHHHHhcc--CCCCchhHHHhCcHHHHHHhhccCC-HHH----------------------
Q 000286 142 MAVLSYLDFFSTGVQRVALSTAANMCK--KLPSDAADFVMEAVPLLTNLLQYHD-AKV---------------------- 196 (1720)
Q Consensus 142 ~~LL~lLd~~~~~vqr~Al~aLsNlc~--~~~~~~~~~v~~~lP~L~~LL~~~D-~~V---------------------- 196 (1720)
..++ |=-+.+...+-.|+..|..+.- ......-..|.--+..+..++...| ...
T Consensus 384 er~~-FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lFk~l~~~~~~d~~k~~k~~~k~kks~k~~k~e~~~ 462 (988)
T KOG2038|consen 384 ERLA-FRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLFKTLVGKKDKDNRKDDKGAAKKKKSNKKDKKEEVS 462 (988)
T ss_pred HHHH-cccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhcccccccchhhhhc
Q ss_pred ----------HHHHHHHHHHHHhhcCCCHHHHHHHHhCCcHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCH
Q 000286 197 ----------LEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSP 266 (1720)
Q Consensus 197 ----------~e~A~~aLs~L~~~~~~~~~~~~~li~~gll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~ 266 (1720)
+-.|+.+=.|=+--|...++..-..- ++-|..+..+. +.++-.++|.+|-.+.....
T Consensus 463 ~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~----~~tLFkl~Hss---------NFNTsVQaLmLlfQvs~~~~ 529 (988)
T KOG2038|consen 463 TESPIELNSRLLSALLTGVNRAFPFAQTADDKLEEQ----MKTLFKLTHSS---------NFNTSVQALMLLFQVSKKND 529 (988)
T ss_pred ccchhhhhHHHHHHHHhcccccCCcccCchHHHHHH----hHHHHHHHhhc---------ccchhHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHc
Q 000286 267 LCAKTLLHL 275 (1720)
Q Consensus 267 ~~t~~Ll~~ 275 (1720)
-..+....+
T Consensus 530 ~vSDRyY~a 538 (988)
T KOG2038|consen 530 YVSDRYYRA 538 (988)
T ss_pred hhHHHHHHH
No 320
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=20.86 E-value=3e+02 Score=33.83 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC--cHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHHhcCCHHHHH
Q 000286 194 AKVLEHASVCLTRIAEAFASSPDKLDELCNHG--LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAK 270 (1720)
Q Consensus 194 ~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~g--ll~~Lv~LL~~~~~~~~~~~ls~~i~~~alr~L~nLas~s~~~t~ 270 (1720)
.+++.-=|.||+.++..+ ..++....++..+ ++..|++||...+ .+...++..|+++|..|+........
T Consensus 233 ~~~l~iRllAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~------~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 233 RQLLQIRLLAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEE------KVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCC------CCCHHHHHHHHHHHHHHHhccccHHH
Confidence 345555566677665432 3678888888887 9999999998763 46888999999999999986555444
No 321
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=20.25 E-value=5.1e+02 Score=35.57 Aligned_cols=143 Identities=19% Similarity=0.155 Sum_probs=87.7
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 000286 13 RLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSC 92 (1720)
Q Consensus 13 ~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~ 92 (1720)
=.+.+...+..+ ++......+..+..+.....-++.. .....-+...++ +.. -..+....+++|..+++..|+..
T Consensus 442 lW~~l~~~~~~~-~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~-N~~-~~~~~~~~~~il~rls~~~~~~L 516 (727)
T PF12726_consen 442 LWKALLKSLDSD-NPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQF-NKS-LGQITDLISQILERLSDFDPSHL 516 (727)
T ss_pred HHHHHHHhhcCC-ChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHH-HHH-HHHHHHHHHHHHHHHhcCCHHHH
Confidence 345566666654 7777777777776665554322211 111122222111 100 12344567899999999999888
Q ss_pred hhhc-ccccHHHHHHHHhcCCcHHHHHHHHHHHHHhhccCcchhhhcCchhHHhhhhccCChHHHHHHHHHHHHhcc
Q 000286 93 AAVV-HYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCK 168 (1720)
Q Consensus 93 ~~vV-~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS~~~~~~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNlc~ 168 (1720)
..+. +.+++..++ .++-+++.++.+.|+..|..+..... -..++-.+|..+-....+-..|.+.++..
T Consensus 517 ~~l~~d~~~~~~i~-s~lfsp~~~l~qaA~~llk~~~d~~~-------R~e~i~~ll~~~~~~tL~ai~~~l~~~~~ 585 (727)
T PF12726_consen 517 KELLSDPDAAQAIW-SLLFSPDDDLYQAAQDLLKQAFDVDG-------RLEAIQALLQSNFSPTLSAINWSLRQLTK 585 (727)
T ss_pred HHHHcCcchhhHHH-hheeCCChHHHHHHHHHHHHHhcCCc-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 8766 678888888 89999999999999999999986332 33333344444444444455555555544
No 322
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=20.15 E-value=1.7e+03 Score=27.44 Aligned_cols=221 Identities=10% Similarity=0.077 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhhhcccccHHHHHHH
Q 000286 28 GKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVTCFVAR 107 (1720)
Q Consensus 28 ~~ql~Al~~L~~lL~~~~~~~l~~~~~~g~Vp~LV~lL~~~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~k 107 (1720)
..+.+++.++++-+.+. -.+|-..+..+-.-+||-+|+- .+-++|.++.|+ +
T Consensus 35 ~~~~k~~eevsk~l~~~-----------------k~il~Gn~e~eP~~e~~~qLtq----------ef~~~~~l~~lI-~ 86 (342)
T KOG1566|consen 35 HKREKAVEEVSKNLDML-----------------KSILYGNDEAEPFAEAVAQLTQ----------EFYNADVLSLLI-Q 86 (342)
T ss_pred HHHHHHHHHHHHHHhhh-----------------HHheeCCCCCCCChHHHHHHHH----------HHHhCCchHHHH-H
Confidence 45666777777666653 2233322333334456666654 345678888888 5
Q ss_pred HhcCCcHHHHHHHHHHHHHhhccCcc------hhhhc--CchhHHhhhhccC-ChHHHHHHHHHHHHhccCCCCchhHHH
Q 000286 108 LLTIEYMDLAEQSLQALKKISQEHPT------ACLRA--GALMAVLSYLDFF-STGVQRVALSTAANMCKKLPSDAADFV 178 (1720)
Q Consensus 108 LL~~~~~dl~Eqal~aL~nIS~~~~~------~Il~~--GgL~~LL~lLd~~-~~~vqr~Al~aLsNlc~~~~~~~~~~v 178 (1720)
-+..-+.+-+..++....|+-+.+-. ..+.+ ..+..++.- .. .+++--.+-..+..|.+...-......
T Consensus 87 ~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrEcirhe~LakiiL~ 164 (342)
T KOG1566|consen 87 HLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRECIRHEFLAKIILE 164 (342)
T ss_pred hhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHHHHhhHHHHHHHHc
Confidence 55555667777788888888665432 12221 223333332 22 344444444445555544444444444
Q ss_pred hCcHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhCC---cHHH-HHHhhcCCCCCCCCCCCChhHHHHH
Q 000286 179 MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG---LVTQ-AATLISTSNSGGGQASLSTPTYTGL 254 (1720)
Q Consensus 179 ~~~lP~L~~LL~~~D~~V~e~A~~aLs~L~~~~~~~~~~~~~li~~g---ll~~-Lv~LL~~~~~~~~~~~ls~~i~~~a 254 (1720)
...+.......+.+.-+|..+|...+..+... +...+.+++..+ ..+. --.||.+. +.-+...+
T Consensus 165 s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~---Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~---------Nyvtkrqs 232 (342)
T KOG1566|consen 165 STNFEKFFLYVQLPNFDIASDAFSTFKELLTR---HKSVVAEFLIRNYDNFFAEVYEKLLRSE---------NYVTKRQS 232 (342)
T ss_pred chhHHHHHHHHhccchHHHHHHHHHHHHHHHH---hHHHHHHHHHhChhhhHHHHHHHHhccc---------ceehHHHH
Confidence 56667777777777789999999999988886 566666666543 3344 44555554 45578888
Q ss_pred HHHHHHHhcCC---HHHHHHHHHcCChHHHHHhhcCCCc
Q 000286 255 IRLLSTCASGS---PLCAKTLLHLGISGILKDILSGSGV 290 (1720)
Q Consensus 255 lr~L~nLas~s---~~~t~~Ll~~gil~~L~~LL~~~~~ 290 (1720)
+.+|+.+--+. ...++.+-...-+..|..+|....+
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdksk 271 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSK 271 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccc
Confidence 99999776443 3344555555677888888876554
No 323
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=20.04 E-value=1.8e+03 Score=27.70 Aligned_cols=161 Identities=11% Similarity=0.046 Sum_probs=95.3
Q ss_pred ccccCcHHHHHHhhcC----CCCHHHHHHHHHHHHHhhccCCcchhhhcccc-cHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000286 52 FSVDSFAPVLVGLLNH----ESNPDIMLLAARALTHLCDVLPSSCAAVVHYG-AVTCFVARLLTIEYMDLAEQSLQALKK 126 (1720)
Q Consensus 52 ~~~~g~Vp~LV~lL~~----~~~~eiq~~AaraLtNL~~~~p~~~~~vV~~G-aVp~Lv~kLL~~~~~dl~Eqal~aL~n 126 (1720)
+.....+..|+..+.. =....+..++..++.++..-.|+.- +...+ -+|.|+..++ +...+++.+|+..+..
T Consensus 125 ~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M--~~~~~~W~~~l~~~l~-~~~k~ir~~a~~l~~~ 201 (372)
T PF12231_consen 125 IMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQM--IKHADIWFPILFPDLL-SSAKDIRTKAISLLLE 201 (372)
T ss_pred ccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHH
Confidence 4445556666665542 1246788899999999998666442 22223 5788884554 5577888888877777
Q ss_pred hhccCcc---------hhhhcCchh---------HHhhhhccCChHHHHHHHHHHH-HhccCCCCchhHHHhCcHHHHHH
Q 000286 127 ISQEHPT---------ACLRAGALM---------AVLSYLDFFSTGVQRVALSTAA-NMCKKLPSDAADFVMEAVPLLTN 187 (1720)
Q Consensus 127 IS~~~~~---------~Il~~GgL~---------~LL~lLd~~~~~vqr~Al~aLs-Nlc~~~~~~~~~~v~~~lP~L~~ 187 (1720)
++..-+. .+++..-.+ .+-.++........-.-+|.+. -+.++...........-+.....
T Consensus 202 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~ 281 (372)
T PF12231_consen 202 AKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEK 281 (372)
T ss_pred HHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHH
Confidence 7542211 122222111 1333333323333333344433 33333335666677788888888
Q ss_pred hhccCCHHHHHHHHHHHHHHHhhcCCCH
Q 000286 188 LLQYHDAKVLEHASVCLTRIAEAFASSP 215 (1720)
Q Consensus 188 LL~~~D~~V~e~A~~aLs~L~~~~~~~~ 215 (1720)
..++.|+.+...|..|--+++..+..++
T Consensus 282 cFn~~d~~~k~~A~~aW~~liy~~~~~~ 309 (372)
T PF12231_consen 282 CFNSSDPQVKIQAFKAWRRLIYASNPNE 309 (372)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 8999999999988888777777543333
No 324
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=20.04 E-value=2.5e+02 Score=27.00 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=49.3
Q ss_pred ccCcHHHHHHhhcCCCCHHHHH-HHHHHHHHhhccCCcchhhhcccccHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 000286 54 VDSFAPVLVGLLNHESNPDIML-LAARALTHLCDVLPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKIS 128 (1720)
Q Consensus 54 ~~g~Vp~LV~lL~~~~~~eiq~-~AaraLtNL~~~~p~~~~~vV~~GaVp~Lv~kLL~~~~~dl~Eqal~aL~nIS 128 (1720)
.+|+|...-+||-.+.+++++. .-.|||++-.. -..|+|. +--...+++-.++.-..+..|=
T Consensus 8 ~dgLveKytELL~Ge~~~e~~EkVk~W~lYshia------------KsMPpL~-kHWN~~~PeaK~~ik~li~~Ik 70 (82)
T PF10835_consen 8 FDGLVEKYTELLLGETSPEMKEKVKQWALYSHIA------------KSMPPLA-KHWNGTYPEAKEEIKELIEEIK 70 (82)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH------------HhCcHHH-HhhcccCchHHHHHHHHHHHHH
Confidence 3678888889998888888876 67899988543 3678999 7777789999998888887773
Done!