Query 000288
Match_columns 1720
No_of_seqs 522 out of 2876
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 18:25:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000288.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_65-69//hhsearch_pdb/000288hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h1d_A E3 ubiquitin-protein li 1.0 1 1 692.9 32.1 373 1245-1720 16-405 (405)
2 1zvd_A SMAD ubiquitination reg 1.0 1 1 690.8 28.8 362 1254-1720 3-380 (380)
3 2oni_A E3 ubiquitin-protein li 1.0 1 1 688.5 25.4 366 1244-1712 11-392 (392)
4 1c4z_A E6AP, ubiquitin-protein 1.0 1 1 683.7 21.6 339 1299-1720 4-358 (358)
5 3olm_A E3 ubiquitin-protein li 1.0 1 1 678.6 24.9 340 1299-1719 73-428 (429)
6 1nd7_A WW domain-containing pr 1.0 1 1 673.8 30.9 357 1254-1714 3-374 (374)
7 3ul1_B Importin subunit alpha- 1.0 1 1 360.8 37.7 391 8-482 53-461 (510)
8 3tpo_A Importin subunit alpha- 1.0 1 1 350.0 37.9 388 10-481 74-479 (529)
9 4b8j_A Importin subunit alpha- 1.0 1 1 305.4 38.4 387 11-481 73-478 (528)
10 1wa5_B Importin alpha subunit; 1.0 1 1 290.4 37.6 387 10-481 85-492 (530)
No 1
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=1.00 E-value=1 Score=692.88 Aligned_cols=373 Identities=29% Similarity=0.473 Sum_probs=323.5
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCC--
Q ss_conf 310699445755689978862011079999999840679999874001102764303999707028999999996502--
Q 000288 1245 LTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS-- 1322 (1720)
Q Consensus 1245 l~~~~PFlfpfe~R~~~f~~~~fg~~r~l~~~~~~~~~~~~~~~~~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~~-- 1322 (1720)
....-|. .+|+.|+.+|+. .++.... + .+..+.+++|+|++|++|+++++....
T Consensus 16 ~~~~~~~-~~f~~k~~~F~~----------~l~~~~~--~-----------~~~~~~~l~VrR~~i~eds~~~l~~~~~~ 71 (405)
T 3h1d_A 16 VLFQGPH-MDFDVKRKYFRQ----------ELERLDE--G-----------LRKEDMAVHVRRDHVFEDSYRELHRKSPE 71 (405)
T ss_dssp GGGCSTT-SCHHHHHHHHHH----------HHHHHTT--T-----------CCCCEEEEEECGGGHHHHHHHHHTTSCTT
T ss_pred HHHCCCC-CCHHHHHHHHHH----------HHHHHHC--C-----------CCCCCEEEEEECCHHHHHHHHHHHCCCHH
T ss_conf 8614987-688999999999----------9986224--7-----------88986699994860799999999715988
Q ss_pred CCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 897317999827632377-5058999999999832588983238999999854468888889987888873025788877
Q 000288 1323 SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFP 1401 (1720)
Q Consensus 1323 ~~~~~LeVeF~gE~G~g~-GptrEFy~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP 1401 (1720)
..++.|+|+|.||+|+|. |++||||++|++|+++|+++||+.++. +.+ .++|
T Consensus 72 ~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~----------------------~~~-----~~~~ 124 (405)
T 3h1d_A 72 EMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPG----------------------DRV-----TYTI 124 (405)
T ss_dssp GGGSEEEEEETTCCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSS----------------------CSS-----EEEE
T ss_pred HHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCC----------------------CCE-----EEEE
T ss_conf 7616669997898774787369999999999983986444022268----------------------832-----6730
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999977766887034789998705330001003982356678999998809978925400007999999999999985
Q 000288 1402 RPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVC 1481 (1720)
Q Consensus 1402 ~p~~~~~~~~~~~~~~~~l~~F~~lG~lia~Al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~ 1481 (1720)
+|.+.. ..+++++|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||+++++|++|+++
T Consensus 125 np~s~~--------~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~-- 194 (405)
T 3h1d_A 125 NPSSHA--------NPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLEN-- 194 (405)
T ss_dssp CCC-------------CHHHHHHHHHHHHHHHHHHTCCCCCEECHHHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHS--
T ss_pred CCCCCC--------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC--
T ss_conf 773225--------7557789998869999999389825877629999982699897898987549999998666509--
Q ss_pred HHHHHHCCCCCCCCCHHCCCCCCCCCCC--CCCCCCCC----C-CCCEECCCCCC--CCCCCCHHHHHHHHHHHHHHHCH
Q ss_conf 4432100146762101113335886444--52200149----9-97221169995--33703199999999999977307
Q 000288 1482 RKQHLESMTSDNCEEVVDLRFRGAPIED--LCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGI 1552 (1720)
Q Consensus 1482 ~~~~~~~~~~~~~~~~~~l~~~~~~ied--L~L~Ftlp----g-~~~~eL~pgG~--~VT~~N~~eYv~~v~~~~l~~~v 1552 (1720)
++++ ++|+|++. | ..++||+|||+ +||.+|+++||+++++|+|+.+|
T Consensus 195 ------------------------~~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~v 250 (405)
T 3h1d_A 195 ------------------------DVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAI 250 (405)
T ss_dssp ------------------------CGGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHHHHHHHHTGGG
T ss_pred ------------------------CHHHHCCEEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------------85564341489998523786236860578977742667689999999999998779
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999998412213343222588998898641388878887886321086387799976899999998029999998751
Q 000288 1553 MRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFC 1632 (1720)
Q Consensus 1553 ~~q~~afr~GF~~V~p~~~L~~F~~~EL~~li~G~~~~w~~~~L~~~~~~~~Gy~~~s~~i~~fw~vl~~~s~eerr~FL 1632 (1720)
+.|++||++||++|+|..+|++|+|+||+.++||.++ ||+++|+++|+| +||+.+|++|+|||+|+++|+.+||++||
T Consensus 251 ~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~-id~~dl~~~t~y-~gy~~~~~~i~~FW~v~~~~s~eer~~fL 328 (405)
T 3h1d_A 251 RKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPT-IDIDDLKSNTEY-HKYQSNSIQIQWFWRALRSFDQADRAKFL 328 (405)
T ss_dssp HHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCC-CCHHHHHHTEEE-ESSCTTCHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 9999999999998702888757999999998488777-999999830803-48898870474499899749999999999
Q ss_pred HHHCCCCCCCCCCCCCCCC-----CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 4113888889899766798-----15898338999988888999999998999965306558213679999999999999
Q 000288 1633 QFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLV 1707 (1720)
Q Consensus 1633 qFvTGs~rLP~gGf~~L~p-----~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilkekL~ 1707 (1720)
||+|||+|+|++||++|+| +|+|.+... ++++||+||||||+|+||+|+|+|+||+||+
T Consensus 329 ~FvTGs~rlP~~Gf~~L~~~~~~~~f~i~~~~~----------------~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~ 392 (405)
T 3h1d_A 329 QFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDR----------------STDRLPSAHTCFNQLDLPAYESFEKLRHMLL 392 (405)
T ss_dssp HHHHSSSCCCTTCGGGCBCSSSBCCEEEEEECS----------------CTTSCCEEEGGGTEEEEECCSSHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCC----------------CCCCCCCCEECCCEEECCCCCCHHHHHHHHH
T ss_conf 997299988987510036667873079951799----------------8877944000218757989999999999999
Q ss_pred HHHHCCCCCCCCC
Q ss_conf 9998098554479
Q 000288 1708 YAISEGQGSFDLS 1720 (1720)
Q Consensus 1708 ~AI~eg~g~F~LS 1720 (1720)
+||+||++||+|.
T Consensus 393 ~AI~e~~~GFgla 405 (405)
T 3h1d_A 393 LAIQEASEGFGLA 405 (405)
T ss_dssp HHHHC--------
T ss_pred HHHHHCCCCCCCC
T ss_conf 9998077786879
No 2
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=690.82 Aligned_cols=362 Identities=26% Similarity=0.424 Sum_probs=319.3
Q ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHC-C-CCCCEEEEE
Q ss_conf 75568997886201107999999984067999987400110276430399970702899999999650-2-897317999
Q 000288 1254 PFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMY-S-SQKAVLEVE 1331 (1720)
Q Consensus 1254 pfe~R~~~f~~~~fg~~r~l~~~~~~~~~~~~~~~~~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~-~-~~~~~LeVe 1331 (1720)
+|+.|..+|+. .++..+. ...+.+++|+|++|++|+++.+... + +.++.|+|+
T Consensus 3 ~f~~k~~~f~~----------~l~~~~~---------------~~~~~~l~V~R~~i~~ds~~~l~~~~~~~lk~~l~V~ 57 (380)
T 1zvd_A 3 DLVQKLKILRQ----------ELSQQQP---------------QAGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIK 57 (380)
T ss_dssp SHHHHHHHHHH----------HHHHHSC---------------SSCEEEEEECSTTHHHHHHHHHHTSCGGGGGSEEEEE
T ss_pred CHHHHHHHHHH----------HHHHCCC---------------CCCCEEEEECCCCHHHHHHHHHHCCCHHHHCCCEEEE
T ss_conf 75999999999----------9874278---------------8986699976677999999999745979846745999
Q ss_pred ECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 827632377-5058999999999832588983238999999854468888889987888873025788877999999777
Q 000288 1332 YFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADA 1410 (1720)
Q Consensus 1332 F~gE~G~g~-GptrEFy~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~ 1410 (1720)
|.||+|+|. ||+||||+++++|+++|+++||..+.. +.|. ++|+|.+..
T Consensus 58 F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~----------------------~~~~-----~~~np~s~~--- 107 (380)
T 1zvd_A 58 FRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRD----------------------DIYT-----LQINPDSAV--- 107 (380)
T ss_dssp ETTCCCSCHHHHHHHHHHHHHHHHTSGGGSSEEEETT----------------------EEEE-----EEECTTGGG---
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCC----------------------CCEE-----ECCCCHHHC---
T ss_conf 7787675888518999999999980876787003688----------------------8713-----435832215---
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEHEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 66887034789998705330001003982356678999998809978925400007999999999999985443210014
Q 000288 1411 SEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMT 1490 (1720)
Q Consensus 1411 ~~~~~~~~~l~~F~~lG~lia~Al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~ 1490 (1720)
..+++++|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||+++++|++|++.
T Consensus 108 -----~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~ll~~----------- 171 (380)
T 1zvd_A 108 -----NPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILEN----------- 171 (380)
T ss_dssp -----STTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCSTTHHHHCHHHHHHHHHHHHS-----------
T ss_pred -----CHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHC-----------
T ss_conf -----8678999998588887998179524775879999999579887788777689999999998708-----------
Q ss_pred CCCCCCHHCCCCCCCCCCC-CCCCCCCC----C-CCCEECCCCCC--CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 6762101113335886444-52200149----9-97221169995--337031999999999999773079999999841
Q 000288 1491 SDNCEEVVDLRFRGAPIED-LCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAG 1562 (1720)
Q Consensus 1491 ~~~~~~~~~l~~~~~~ied-L~L~Ftlp----g-~~~~eL~pgG~--~VT~~N~~eYv~~v~~~~l~~~v~~q~~afr~G 1562 (1720)
++++ ++|+|+++ | ..++||+|||+ +||.+|+++||+++++|+|+.+|+.|++||++|
T Consensus 172 ---------------d~~~~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~G 236 (380)
T 1zvd_A 172 ---------------DITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKG 236 (380)
T ss_dssp ---------------CCTTTSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred ---------------CCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------------81000234168863037957678527999777144023999999999999987699999999975
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 22133432225889988986413888788878863210863877999768999999980299999987514113888889
Q 000288 1563 FNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLP 1642 (1720)
Q Consensus 1563 F~~V~p~~~L~~F~~~EL~~li~G~~~~w~~~~L~~~~~~~~Gy~~~s~~i~~fw~vl~~~s~eerr~FLqFvTGs~rLP 1642 (1720)
|++|+|..+|++|+|+||+.++||.+++ |+++|+++|+|. ||+.++++|+|||+||++|+.+||++||||+|||+|+|
T Consensus 237 f~~vip~~~L~~F~~~ELe~li~G~~~i-d~~dl~~~t~y~-gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP 314 (380)
T 1zvd_A 237 FNEVIPQHLLKTFDEKELELIICGLGKI-DVNDWKVNTRLK-HCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVP 314 (380)
T ss_dssp HHHHSCGGGGTTCCHHHHHHHHHCBSSC-CHHHHHHTEEEE-SSCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSSBC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCCCC-CHHHHHHCCEEC-CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf 9887589998579999999864899877-743565331753-88987613626999997289999999999983899889
Q ss_pred CCCCCCCCC-----CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 899766798-----158983389999888889999999989999653065582136799999999999999998098554
Q 000288 1643 PGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSF 1717 (1720)
Q Consensus 1643 ~gGf~~L~p-----~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilkekL~~AI~eg~g~F 1717 (1720)
++||++|+| +|+|+++.. ++++||+||||||+|+||+|+|+|+||+||++||+||+| |
T Consensus 315 ~~Gf~~L~~~~gp~~f~I~~~~~----------------~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~G-F 377 (380)
T 1zvd_A 315 LQGFKALQGAAGPRLFTIHQIDA----------------CTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCG-F 377 (380)
T ss_dssp TTCGGGCEETTEECCEEEEECCC----------------CTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHCC-----
T ss_pred CCCHHHCCCCCCCCCEEEEECCC----------------CCCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCC-C
T ss_conf 86410025667887659995589----------------999897786275887898989999999999999980788-6
Q ss_pred CCC
Q ss_conf 479
Q 000288 1718 DLS 1720 (1720)
Q Consensus 1718 ~LS 1720 (1720)
+|.
T Consensus 378 ~l~ 380 (380)
T 1zvd_A 378 AVE 380 (380)
T ss_dssp ---
T ss_pred CCC
T ss_conf 869
No 3
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=1.00 E-value=1 Score=688.52 Aligned_cols=366 Identities=28% Similarity=0.441 Sum_probs=322.9
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 73106994457556899788620110799999998406799998740011027643039997070289999999965028
Q 000288 1244 QLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSS 1323 (1720)
Q Consensus 1244 ~l~~~~PFlfpfe~R~~~f~~~~fg~~r~l~~~~~~~~~~~~~~~~~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~~~ 1323 (1720)
.....+||.++|+.|+.||+.. +...+ ....+.+++|+|++|++|+++++.....
T Consensus 11 ~~~~~~p~~~~f~~k~~~f~~~----------l~~~~---------------~~~~~~~l~V~R~~i~eds~~~l~~~~~ 65 (392)
T 2oni_A 11 RENLYFQGSREFKQKYDYFRKK----------LKKPA---------------DIPNRFEMKLHRNNIFEESYRRIMSVKR 65 (392)
T ss_dssp ---CCSTTHHHHHHHHHHHHHH----------CCCCS---------------SSCSEEEEEECGGGHHHHHHHHHHHCSC
T ss_pred HCCCCCCCCCCHHHHHHHHHHH----------HHCCC---------------CCCCCEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 1035798621189999999999----------71254---------------7899779998178669999999976592
Q ss_pred ---CCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---97317999827632377-50589999999998325889832389999998544688888899878888730257888
Q 000288 1324 ---QKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGL 1399 (1720)
Q Consensus 1324 ---~~~~LeVeF~gE~G~g~-GptrEFy~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gL 1399 (1720)
.+..|+|+|.||+|+|. ||+||||+++++|+++|+++||..+.. +.| .+
T Consensus 66 ~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~----------------------~~~-----~~ 118 (392)
T 2oni_A 66 PDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSAT----------------------DNY-----TL 118 (392)
T ss_dssp GGGGGSEEEEEEC-CCSSCHHHHHHHHHHHHHHHHTCGGGSSEEESST----------------------TCC-----CE
T ss_pred HHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCC----------------------CCC-----EE
T ss_conf 776274179998787662688438999999999973966687400389----------------------882-----23
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 77999999777668870347899987053300010039823566789999988099789254000079999999999999
Q 000288 1400 FPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1479 (1720)
Q Consensus 1400 fP~p~~~~~~~~~~~~~~~~l~~F~~lG~lia~Al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~ 1479 (1720)
+|+|.+... . .+++++|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||+++++|++|++.
T Consensus 119 ~~np~s~~~----~---~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~K~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~ 191 (392)
T 2oni_A 119 QINPNSGLC----N---EDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILEN 191 (392)
T ss_dssp EECTTHHHH----C---TTHHHHHHHHHHHHHHHHHHTCCCSSCBCHHHHHHHTTCCCCTHHHHTTCHHHHHHHHHHHHS
T ss_pred CCCCCCCCC----C---HHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHCC
T ss_conf 028863546----6---778888873355430442379503764259999999679887889877489999998888649
Q ss_pred HHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC----CC-CCEECCCCCC--CCCCCCHHHHHHHHHHHHHHHCH
Q ss_conf 85443210014676210111333588644452200149----99-7221169995--33703199999999999977307
Q 000288 1480 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----GY-PDYILKPGDE--NVDINNLEEYISLVVDATVKTGI 1552 (1720)
Q Consensus 1480 ~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlp----g~-~~~eL~pgG~--~VT~~N~~eYv~~v~~~~l~~~v 1552 (1720)
++++|+|+|+++ |. .++||+|||+ +||.+|+++||+++++|+++.+|
T Consensus 192 --------------------------d~~~l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i 245 (392)
T 2oni_A 192 --------------------------DPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRV 245 (392)
T ss_dssp --------------------------CCGGGCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHHHHHHHHHHHHTTTS
T ss_pred --------------------------CHHHCEEEEEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf --------------------------965730468994103894468963799856734444299999999999886667
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999998412213343222588998898641388878887886321086387799976899999998029999998751
Q 000288 1553 MRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFC 1632 (1720)
Q Consensus 1553 ~~q~~afr~GF~~V~p~~~L~~F~~~EL~~li~G~~~~w~~~~L~~~~~~~~Gy~~~s~~i~~fw~vl~~~s~eerr~FL 1632 (1720)
+.|++||++||++|+|..+|++|+|+||+.++||.++ +|+++|+++|+|+|||+.++++|+|||+||.+|+.+||++||
T Consensus 246 ~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~-id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~s~eer~~fL 324 (392)
T 2oni_A 246 QKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGD-VDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLL 324 (392)
T ss_dssp HHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCC-CCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHCCEEECCCCCCCCCHHEEHHHHHHHCCHHHHHHHH
T ss_conf 7999999999998566876516999999886068988-789998401587788799873220099999849999999999
Q ss_pred HHHCCCCCCCCCCCCCCC-----CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 411388888989976679-----815898338999988888999999998999965306558213679999999999999
Q 000288 1633 QFVTGAPRLPPGGLAVLN-----PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLV 1707 (1720)
Q Consensus 1633 qFvTGs~rLP~gGf~~L~-----p~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilkekL~ 1707 (1720)
||||||+|+|++||++|. ++|+|.+.. ++++||+||||||+|+||+|+|+|+||+||+
T Consensus 325 ~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~-----------------~~~~LP~a~TCfn~L~LP~Yss~e~L~~kL~ 387 (392)
T 2oni_A 325 QFVTGTSRVPMNGFAELYGSNGPQLFTIEQWG-----------------SPEKLPRAHTCFNRLDLPPYETFEDLREKLL 387 (392)
T ss_dssp HHHHSCSCCCTTCGGGCEETTEECCCEEEECS-----------------CTTSCCEEEGGGTEEEECCCSSHHHHHHHHH
T ss_pred HHHHCCCCCCCCCHHHHCCCCCCCCEEEEECC-----------------CCCCCCEEECCCCEEECCCCCCHHHHHHHHH
T ss_conf 98718998898555440456788755997589-----------------8886968872567868989899999999999
Q ss_pred HHHHC
Q ss_conf 99980
Q 000288 1708 YAISE 1712 (1720)
Q Consensus 1708 ~AI~e 1712 (1720)
+||++
T Consensus 388 ~AI~n 392 (392)
T 2oni_A 388 MAVEN 392 (392)
T ss_dssp HHHC-
T ss_pred HHHHC
T ss_conf 99739
No 4
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=1.00 E-value=1 Score=683.71 Aligned_cols=339 Identities=31% Similarity=0.536 Sum_probs=305.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHC-----CCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 30399970702899999999650-----2897317999827632377-50589999999998325889832389999998
Q 000288 1299 ERQKVRVSRNRILDSAAKVMEMY-----SSQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPS 1372 (1720)
Q Consensus 1299 ~r~kv~V~R~~il~~a~~~l~~~-----~~~~~~LeVeF~gE~G~g~-GptrEFy~lvs~El~~~~l~lf~~~~~~~~~~ 1372 (1720)
+..+++|+|++|++|++++++.+ .+.|+.|+|+|.||+|+|. ||+||||+++++|+++|+++||+.++.+
T Consensus 4 ~~~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~---- 79 (358)
T 1c4z_A 4 PYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDEST---- 79 (358)
T ss_dssp CSCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETTCCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTT----
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCC----
T ss_conf 7389997687579999999998732697986574699977876748886399999999999718767955652899----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHEECCCCCCCCCCHHHHHHH
Q ss_conf 54468888889987888873025788877999999777668870347899987053300010039823566789999988
Q 000288 1373 MEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLV 1452 (1720)
Q Consensus 1373 ~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lia~Al~d~~~ldl~fs~~f~k~l 1452 (1720)
. .++|+|.+. ...++|+|+|++||+||++++++|++|+++|||+|
T Consensus 80 ------------------~------~~~~np~s~-----------~~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~l 124 (358)
T 1c4z_A 80 ------------------K------LFWFNPSSF-----------ETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKL 124 (358)
T ss_dssp ------------------T------EEEECTTCC-----------SCHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHH
T ss_pred ------------------C------EEEECCCCC-----------CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf ------------------8------474277322-----------33577886999999999779976876889999999
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCC-CCCCCCCCCC-----C-CCCEECC
Q ss_conf 0997892540000799999999999998544321001467621011133358864-4452200149-----9-9722116
Q 000288 1453 LGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPI-EDLCLDFTLP-----G-YPDYILK 1525 (1720)
Q Consensus 1453 lg~~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i-edL~L~Ftlp-----g-~~~~eL~ 1525 (1720)
+|.+++++||+.+||++|++|++|+++ ++ ++ ++++++|++. | ..++||+
T Consensus 125 lg~~~~l~Dl~~~Dp~l~~sL~~l~~~-----------------------~~-d~~~~l~ltF~~~~~~~~G~~~~~eL~ 180 (358)
T 1c4z_A 125 MGKKGTFRDLGDSHPVLYQSLKDLLEY-----------------------EG-NVEDDMMITFQISQTDLFGNPMMYDLK 180 (358)
T ss_dssp TTCCCCHHHHHHHSHHHHHHHHHHHHC-----------------------CS-CHHHHTCCBSEEEECCTTTCCEEEESS
T ss_pred HCCCCCHHHHHHHCHHHHHHHHHHHHC-----------------------CC-CHHHHCCCEEEEECCCCCCCEEEEECC
T ss_conf 589998899998699999999999855-----------------------77-666650350787414568975346447
Q ss_pred CCCC--CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHCCCCCCCCHHHHHHHEEE
Q ss_conf 9995--33703199999999999977307999999984122133432225-88998898641388878887886321086
Q 000288 1526 PGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKF 1602 (1720)
Q Consensus 1526 pgG~--~VT~~N~~eYv~~v~~~~l~~~v~~q~~afr~GF~~V~p~~~L~-~F~~~EL~~li~G~~~~w~~~~L~~~~~~ 1602 (1720)
|||+ +||.+|+++||+++++|+++.+|++|++||++||++|+|...|. +|+|+||+.++||.++ ||+++|+++|+|
T Consensus 181 p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~li~G~~~-id~~~l~~~t~y 259 (358)
T 1c4z_A 181 ENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRN-LDFQALEETTEY 259 (358)
T ss_dssp TTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBCC-CCCTTTSTTCEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHCCCC-CCHHHHHHHCEE
T ss_conf 7986665442129999999999986210999999999888873695253348999999998613567-889999987131
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 38779997689999999802999999875141138888898997667981589833899998888899999999899996
Q 000288 1603 DHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLP 1682 (1720)
Q Consensus 1603 ~~Gy~~~s~~i~~fw~vl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LP 1682 (1720)
+|||+.++++|+|||+||++|+.+||++||||+|||+|+|++||++| +|+|++..+ ++++||
T Consensus 260 ~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l--~~~I~~~~~----------------~~~~LP 321 (358)
T 1c4z_A 260 DGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGP----------------DTERLP 321 (358)
T ss_dssp ESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGG--CCEEEEEEE----------------SCSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC--EEEEECCCC----------------CCCCCE
T ss_conf 78989776045369999973999999999989708997899885545--246204789----------------888880
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 53065582136799999999999999998098554479
Q 000288 1683 SVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1720 (1720)
Q Consensus 1683 sa~TC~n~LkLP~YsS~eilkekL~~AI~eg~g~F~LS 1720 (1720)
+||||||+|+||+|+|+|+||+||++||++|+| |+|.
T Consensus 322 ~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~G-Fgl~ 358 (358)
T 1c4z_A 322 TSHTCFNVLLLPEYSSKEKLKERLLKAITYAKG-FGML 358 (358)
T ss_dssp EEEGGGTEEEEEECSCHHHHHHHHHHHHHHC-------
T ss_pred EEECCCCEEECCCCCCHHHHHHHHHHHHHHCCC-CCCC
T ss_conf 787357886898989999999999999981899-7849
No 5
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=678.63 Aligned_cols=340 Identities=27% Similarity=0.432 Sum_probs=306.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC--CCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 303999707028999999996502--897317999827632377-50589999999998325889832389999998544
Q 000288 1299 ERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEI 1375 (1720)
Q Consensus 1299 ~r~kv~V~R~~il~~a~~~l~~~~--~~~~~LeVeF~gE~G~g~-GptrEFy~lvs~El~~~~l~lf~~~~~~~~~~~~~ 1375 (1720)
.+.+++|+|++|++|+++.+.... +.++.|+|+|.||+|+|. ||+||||+++++|+++|+++||..+..
T Consensus 73 ~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~-------- 144 (429)
T 3olm_A 73 GQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAY-------- 144 (429)
T ss_dssp SCEEEEEETTSHHHHHHHHHHHSCHHHHTSCEEEEEETTC--------CHHHHHHHHHHTCGGGSSEEESSS--------
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECC--------
T ss_conf 855899954211899999998468575186369997998743787449999999999974966799435079--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHEECCCCCCCCCCHHHHHHHHCC
Q ss_conf 68888889987888873025788877999999777668870347899987053300010039823566789999988099
Q 000288 1376 DGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGH 1455 (1720)
Q Consensus 1376 ~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~~~~~~~~~~l~~F~~lG~lia~Al~d~~~ldl~fs~~f~k~llg~ 1455 (1720)
+.| .++|+|.+... .+++++|+|+|++||+||++++++|++|+++|||+|+|.
T Consensus 145 --------------~~~-----~~~~np~s~~~--------~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~Llg~ 197 (429)
T 3olm_A 145 --------------DNY-----TIQINPNSGIN--------PEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRK 197 (429)
T ss_dssp --------------SSC-----CEEECGGGGGS--------TTHHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHHHTTC
T ss_pred --------------CCE-----EEEECCCCCCC--------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf --------------981-----57568865588--------778999999999999999669866877689999761399
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCC-CCCCCCCCC----C-CCCEECCCCCC
Q ss_conf 78925400007999999999999985443210014676210111333588644-452200149----9-97221169995
Q 000288 1456 ELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIE-DLCLDFTLP----G-YPDYILKPGDE 1529 (1720)
Q Consensus 1456 ~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ie-dL~L~Ftlp----g-~~~~eL~pgG~ 1529 (1720)
+++++||+.+||+++++|++|++. +++ .|+|+|+++ | ..++||+|||+
T Consensus 198 ~~~l~Dl~~~Dp~l~~sL~~ll~~--------------------------d~~~~l~l~F~~~~~~~g~~~~veL~p~G~ 251 (429)
T 3olm_A 198 KVVLQDMEGVDAEVYNSLNWMLEN--------------------------SIDGVLDLTFSADDERFGEVVTVDLKPDGR 251 (429)
T ss_dssp CCCHHHHHHHCHHHHHHHHHHTTS--------------------------CCTTTCCCBSEEEEEETTEEEEEESSTTGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHC--------------------------CHHHHHCCCEEEEECCCCCEEEEECCCCCC
T ss_conf 997999998769999999999848--------------------------987762374388740479634685467876
Q ss_pred --CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHEEECCCCC
Q ss_conf --337031999999999999773079999999841221334322258899889864138887888788632108638779
Q 000288 1530 --NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYT 1607 (1720)
Q Consensus 1530 --~VT~~N~~eYv~~v~~~~l~~~v~~q~~afr~GF~~V~p~~~L~~F~~~EL~~li~G~~~~w~~~~L~~~~~~~~Gy~ 1607 (1720)
+||.+|+++||+++++|+++.+|+.|++||++||++|+|..+|++|+|+||+.++||.+++ |+++|+++|+| +||+
T Consensus 252 ~i~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~i-d~~dl~~~t~y-~Gy~ 329 (429)
T 3olm_A 252 NIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEI-DIEDWKKHTDY-RGYQ 329 (429)
T ss_dssp GSBCCTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCCC-CHHHHHHTEEE-ESCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCCC-CHHHHHHHCCC-CCCC
T ss_conf 666570468999999999999876999999999975632799998459999999995699888-99999974623-6999
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99768999999980299999987514113888889899766798-----1589833899998888899999999899996
Q 000288 1608 AKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLP 1682 (1720)
Q Consensus 1608 ~~s~~i~~fw~vl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p-----~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LP 1682 (1720)
.++++|+|||+||++|+.+||++||||||||+|+|++||++|+| +|+|++.. .+++||
T Consensus 330 ~~~~~I~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~g~~~f~I~~~~-----------------~~~~LP 392 (429)
T 3olm_A 330 ESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAG-----------------EVQQLP 392 (429)
T ss_dssp TTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCBCTTCGGGCEETTEECCEEEECCS-----------------CTTSCC
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECC-----------------CCCCCC
T ss_conf 886299999999986899999999958518998897530004676777218996289-----------------877897
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5306558213679999999999999999809855447
Q 000288 1683 SVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDL 1719 (1720)
Q Consensus 1683 sa~TC~n~LkLP~YsS~eilkekL~~AI~eg~g~F~L 1719 (1720)
+||||||+|+||+|+|+|+||+||++||+|++| |++
T Consensus 393 ~A~TCfN~L~LP~Yss~e~L~ekL~~AI~~~~G-Fg~ 428 (429)
T 3olm_A 393 KSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIG-FGQ 428 (429)
T ss_dssp EEEGGGTEEECCCCSSHHHHHHHHHHHHHHTC-----
T ss_pred CCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCC-CCC
T ss_conf 220143776897989999999999999972798-787
No 6
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=1.00 E-value=1 Score=673.81 Aligned_cols=357 Identities=30% Similarity=0.441 Sum_probs=313.5
Q ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCC--CCCCEEEEE
Q ss_conf 755689978862011079999999840679999874001102764303999707028999999996502--897317999
Q 000288 1254 PFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVE 1331 (1720)
Q Consensus 1254 pfe~R~~~f~~~~fg~~r~l~~~~~~~~~~~~~~~~~~~~~~~rl~r~kv~V~R~~il~~a~~~l~~~~--~~~~~LeVe 1331 (1720)
+|+.|+.+|+. .++... ..++.+++|+|++|++|+++.+.... ..++.|+|+
T Consensus 3 ~f~~k~~~f~~----------~~~~~~----------------~~~~~~l~V~R~~i~~ds~~~l~~~~~~~l~~~l~V~ 56 (374)
T 1nd7_A 3 GFRWKLAHFRY----------LCQSNA----------------LPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVI 56 (374)
T ss_dssp THHHHHHHHHH----------HHHHTC----------------CSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEE
T ss_pred CHHHHHHHHHH----------HHHHCC----------------CCCCEEEEECCCCHHHHHHHHHHHCCHHHCCCEEEEE
T ss_conf 75899999999----------986247----------------9997699987887799999999836987615548999
Q ss_pred ECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 827632377-5058999999999832588983238999999854468888889987888873025788877999999777
Q 000288 1332 YFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADA 1410 (1720)
Q Consensus 1332 F~gE~G~g~-GptrEFy~lvs~El~~~~l~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~gLfP~p~~~~~~~ 1410 (1720)
|.||+|+|. ||+||||+++++|+++|+++||+.++. +.| .++|+|.+..
T Consensus 57 F~gE~G~D~GG~~rEff~ll~~el~~p~~~lF~~~~~----------------------~~~-----~~~~~p~s~~--- 106 (374)
T 1nd7_A 57 FRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGK----------------------NNY-----CLQINPASTI--- 106 (374)
T ss_dssp ETTTCCCCCTHHHHHHHHHHHHHHTCGGGSSEEESSS----------------------SSC-----CEEECGGGGG---
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC----------------------CCC-----EECCCCCCCC---
T ss_conf 8887775788428999999999973976465431588----------------------883-----2204874457---
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEHEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 66887034789998705330001003982356678999998809978925400007999999999999985443210014
Q 000288 1411 SEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMT 1490 (1720)
Q Consensus 1411 ~~~~~~~~~l~~F~~lG~lia~Al~d~~~ldl~fs~~f~k~llg~~~tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~ 1490 (1720)
..+++++|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||+++++|++|++.
T Consensus 107 -----~~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~----------- 170 (374)
T 1nd7_A 107 -----NPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDN----------- 170 (374)
T ss_dssp -----STTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHHHHHHHHHHSS-----------
T ss_pred -----CHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC-----------
T ss_conf -----8779999999899987998659743785879999999389887889999619999865421359-----------
Q ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCCC----C-CCCEECCCCCC--CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHC
Q ss_conf 676210111333588644452200149----9-97221169995--3370319999999999997730799999998412
Q 000288 1491 SDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGF 1563 (1720)
Q Consensus 1491 ~~~~~~~~~l~~~~~~iedL~L~Ftlp----g-~~~~eL~pgG~--~VT~~N~~eYv~~v~~~~l~~~v~~q~~afr~GF 1563 (1720)
+..++ +|+|+|++. | ..++||+|||+ +||.+|+++||+++++|+|+.+|+.|++||++||
T Consensus 171 ------------~~~~~-~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf 237 (374)
T 1nd7_A 171 ------------NIEEC-GLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGF 237 (374)
T ss_dssp ------------CSCSS-CCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred ------------CHHHH-HCCEEEEEEECCCCCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf ------------85253-11015887511478500474478996745231109999999999997020999999999864
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 21334322258899889864138887888788632108638779997689999999802999999875141138888898
Q 000288 1564 NQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPP 1643 (1720)
Q Consensus 1564 ~~V~p~~~L~~F~~~EL~~li~G~~~~w~~~~L~~~~~~~~Gy~~~s~~i~~fw~vl~~~s~eerr~FLqFvTGs~rLP~ 1643 (1720)
++|+|..+|++|+|+||+.++||.++ +|+++|+++|+|+| |+.+|++|+|||+||++|+.+||++||||+|||+|+|+
T Consensus 238 ~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~g-y~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~ 315 (374)
T 1nd7_A 238 NEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPL 315 (374)
T ss_dssp HHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEES-CCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCT
T ss_pred HHHCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHEEECC-CCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHCCCCCCC
T ss_conf 65089899846999999998569987-88898751069748-99898402549999986599999999999848998898
Q ss_pred CCCCCCC-----CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9976679-----8158983389999888889999999989999653065582136799999999999999998098
Q 000288 1644 GGLAVLN-----PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQ 1714 (1720)
Q Consensus 1644 gGf~~L~-----p~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~eilkekL~~AI~eg~ 1714 (1720)
+||++|. ++|+|.+.. ++++||+||||||+|+||+|+|+|+||+||++||+|++
T Consensus 316 ~Gf~~L~~~~gp~~f~I~~~~-----------------~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~e 374 (374)
T 1nd7_A 316 GGFAELMGSNGPQKFCIEKVG-----------------KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374 (374)
T ss_dssp TCGGGCEETTEECCEEEECCS-----------------CTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred CCHHHCCCCCCCCCEEEEECC-----------------CCCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 433221566788765997589-----------------89869778716598779898999999999999997149
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=1.00 E-value=1 Score=360.78 Aligned_cols=391 Identities=20% Similarity=0.313 Sum_probs=342.1
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 86620399999982129999999999999999982699855221100093999998413999989999999999996306
Q 000288 8 SHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDV 87 (1720)
Q Consensus 8 ~~~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~ 87 (1720)
+..+..+++||++|+++ |+..|++|+..+|++|+.+.+++++.++..|+||.||++|+..+++++|.+|||||+||+.+
T Consensus 53 ~~~~~~i~~~v~~l~s~-d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~ 131 (510)
T 3ul1_B 53 GTVNWSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 131 (510)
T ss_dssp CCSSCCHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 21440099999984599-99999999999999865788962999998888899999877899899999999999999649
Q ss_pred CCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC---HHHHCCCHHHHHHHHCCC-----CHHHHHHH
Q ss_conf 9720112101461899999973199688999999999984216943---353428326786310148-----94899999
Q 000288 88 LPSSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFF-----STGVQRVA 159 (1720)
Q Consensus 88 ~~~~~~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~-----~~~vqr~A 159 (1720)
+++++..|+++|+||.|+ +||.+++.+++++|+|+|+||+.+.+. .+++.|++++++.+|... ...++|.+
T Consensus 132 ~~e~~~~vv~~GaIp~Lv-~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a 210 (510)
T 3ul1_B 132 TSEQTKAVVDGGAIPAFI-SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210 (510)
T ss_dssp CHHHHHHHHHTTHHHHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999788799999-9886999899999999999997188999999998698179999997346104459999999
Q ss_pred HHHHHHHCCCC-CCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 99998720599-98626887280799999550699889999999999987313999777999983991799999514799
Q 000288 160 LSTAANMCKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSN 238 (1720)
Q Consensus 160 l~aLsNlc~~~-~~~~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~gli~~Lv~LL~~~~ 238 (1720)
+|+++|+|++. +...+..+.+++|.|..+|.+.|.+++..+||||++|+.+ ..+..+.++..|+++.|+++|.+.
T Consensus 211 ~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~---~~~~~~~i~~~g~i~~Lv~lL~~~- 286 (510)
T 3ul1_B 211 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT- 286 (510)
T ss_dssp HHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS---CHHHHHHHHTTTCHHHHHHHHTCS-
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC---HHHHHHHHHHCCCCHHHHHHHCCC-
T ss_conf 9999987531110257999976999999998168799999999999998602---156678998636512555661388-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCC----CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999888896699999999999831998999999982985999996329995----565434534689977899999974
Q 000288 239 SGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV----SANSAVPPALSRPAEQIFEIVNLA 314 (1720)
Q Consensus 239 ~~~~~~~ls~~i~~~al~~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~----~~~~~~s~i~~~~~~qi~~vi~li 314 (1720)
+..++.+++++|+|++++++..+..+++.|+++.|..+|.+... .++|+++++..++.++.+.+++
T Consensus 287 --------~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~-- 356 (510)
T 3ul1_B 287 --------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN-- 356 (510)
T ss_dssp --------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--
T ss_pred --------CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH--
T ss_conf --------7134268899998862377888888761241278888724998899999999999997084989999885--
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 03179998898888866411015875447999989987888888510356787610497999999987899999987114
Q 000288 315 NELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSS 394 (1720)
Q Consensus 315 ~~LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llp~L~~vy~ss 394 (1720)
..++|.|++...+
T Consensus 357 ------------------------------------------------------------------~g~i~~Lv~lL~~- 369 (510)
T 3ul1_B 357 ------------------------------------------------------------------HGLVPFLVGVLSK- 369 (510)
T ss_dssp ------------------------------------------------------------------TTHHHHHHHHHHS-
T ss_pred ------------------------------------------------------------------CCCHHHHHHHHCC-
T ss_conf ------------------------------------------------------------------3878899999738-
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH---C--CHHHHHHHHHH
Q ss_conf 897899999999999830489999999630023578999885047983287699999999951---7--02465667863
Q 000288 395 VNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEK---L--PGTFSKMFVRE 469 (1720)
Q Consensus 395 ~~~~VR~~~L~~l~riv~~~~~~~L~~~l~~~~~ss~la~il~~~d~~lv~~aL~i~~~Ll~K---~--pd~f~~~f~RE 469 (1720)
.++.||+.+.++|.++....+.+.+..+++...+. .|..+|.+.|+.++..+|..+..+++. . ...|...|+..
T Consensus 370 ~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~-~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ 448 (510)
T 3ul1_B 370 ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE-PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC 448 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHH-HHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 98899999999999987069999999999797899-99998669999999999999999999857426658999999986
Q ss_pred CHHHHHHHHHHCC
Q ss_conf 6899999977238
Q 000288 470 GVVHAVDQLILAG 482 (1720)
Q Consensus 470 GV~~~i~~L~~~~ 482 (1720)
|.+..|+.|..++
T Consensus 449 ggl~~ie~Lq~~~ 461 (510)
T 3ul1_B 449 GGLDKIEALQRHE 461 (510)
T ss_dssp THHHHHHHGGGCS
T ss_pred CCHHHHHHHHCCC
T ss_conf 8599999987599
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=1.00 E-value=1 Score=350.01 Aligned_cols=388 Identities=21% Similarity=0.319 Sum_probs=339.6
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 62039999998212999999999999999998269985522110009399999841399998999999999999630697
Q 000288 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~ 89 (1720)
....++.++++|+++ |+..|+.|+..+|++|+...+++++.++..|+||.||++|...+++++|.+|||||+||+.+++
T Consensus 74 ~~~~l~~lv~~l~s~-d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 74 VNWSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp SSCCHHHHHHHHTSS-CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 888999999985699-9999999999999987278984499999888999999987689989999999999999974999
Q ss_pred CCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC---HHHHCCCHHHHHHHHCCC-----CHHHHHHHHH
Q ss_conf 20112101461899999973199688999999999984216943---353428326786310148-----9489999999
Q 000288 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFF-----STGVQRVALS 161 (1720)
Q Consensus 90 ~~~~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~-----~~~vqr~Al~ 161 (1720)
+++..++++|+||.|+ .|+.+++.+++++|+|+|+||+.+++. .|++.|++++++.+|... ...+++.++|
T Consensus 153 ~~~~~vv~~Gaip~Lv-~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFI-SLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHHHHHHTTHHHHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999888899999-987699989999999999987446889999998738727899987324403768999999999
Q ss_pred HHHHHCCCC-CCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 998720599-9862688728079999955069988999999999998731399977799998399179999951479999
Q 000288 162 TAANMCKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSG 240 (1720)
Q Consensus 162 aLsNlc~~~-~~~~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~gli~~Lv~LL~~~~~~ 240 (1720)
+++|+|++. +...+..+.+++|.|..+|.+.|.+++.++||||++++.+ ..+..+.++..|+++.|+++|.+.
T Consensus 232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~---~~~~~~~v~~~g~i~~Lv~lL~~~--- 305 (529)
T 3tpo_A 232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT--- 305 (529)
T ss_dssp HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS---CHHHHHHHHTTTCHHHHHHHHTCS---
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHCCC---
T ss_conf 99998741321136999864899999995599688999999999986520---005678999636028899886189---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCC----CCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99888896699999999999831998999999982985999996329995----56543453468997789999997403
Q 000288 241 GGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV----SANSAVPPALSRPAEQIFEIVNLANE 316 (1720)
Q Consensus 241 ~~~~~ls~~i~~~al~~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~----~~~~~~s~i~~~~~~qi~~vi~li~~ 316 (1720)
+..++.+++++|++|+++++..+..+++.|+++.|..+|.+... .++|+++++..++.++.+.+++
T Consensus 306 ------~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~---- 375 (529)
T 3tpo_A 306 ------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN---- 375 (529)
T ss_dssp ------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH----
T ss_pred ------CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH----
T ss_conf ------7047788999999997164687788760242789999980998889899999999986163888889996----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 17999889888886641101587544799998998788888851035678761049799999998789999998711489
Q 000288 317 LLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVN 396 (1720)
Q Consensus 317 LLP~L~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llp~L~~vy~ss~~ 396 (1720)
..++|.|++...+ .+
T Consensus 376 ----------------------------------------------------------------~g~i~~Lv~lL~~-~~ 390 (529)
T 3tpo_A 376 ----------------------------------------------------------------HGLVPFLVGVLSK-AD 390 (529)
T ss_dssp ----------------------------------------------------------------TTHHHHHHHHHHS-SC
T ss_pred ----------------------------------------------------------------CCCHHHHHHHHCC-CC
T ss_conf ----------------------------------------------------------------5837999998569-99
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH---HC--CHHHHHHHHHHCH
Q ss_conf 789999999999983048999999963002357899988504798328769999999995---17--0246566786368
Q 000288 397 SPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILME---KL--PGTFSKMFVREGV 471 (1720)
Q Consensus 397 ~~VR~~~L~~l~riv~~~~~~~L~~~l~~~~~ss~la~il~~~d~~lv~~aL~i~~~Ll~---K~--pd~f~~~f~REGV 471 (1720)
+.||+.+.++|.+++...+++.+..++....+.. |..+|.+.|+.++..+|..+..+++ +. .+.|...|+..|.
T Consensus 391 ~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~-L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~gg 469 (529)
T 3tpo_A 391 FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEP-LMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGG 469 (529)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH-HHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf 9999999999999981899999999998968999-999866999999999999999999986862676899999998774
Q ss_pred HHHHHHHHHC
Q ss_conf 9999997723
Q 000288 472 VHAVDQLILA 481 (1720)
Q Consensus 472 ~~~i~~L~~~ 481 (1720)
+..|+.|..+
T Consensus 470 l~~ie~Lq~~ 479 (529)
T 3tpo_A 470 LDKIEALQRH 479 (529)
T ss_dssp HHHHTGGGGC
T ss_pred HHHHHHHHCC
T ss_conf 9999998749
No 9
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=1.00 E-value=1 Score=305.40 Aligned_cols=387 Identities=22% Similarity=0.306 Sum_probs=332.9
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 20399999982129999999999999999982699855221100093999998413999989999999999996306972
Q 000288 11 SGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLPS 90 (1720)
Q Consensus 11 ~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~~ 90 (1720)
...++.|+..|+++ |+..++.|++.|+++++...++++..+...|++|.|+++|..+++++++..|+|+|+||+.+.++
T Consensus 73 ~~~l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 73 LESLPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp --CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 77899999987699-99999999999999814777962999998887999999847899789999999999999679988
Q ss_pred CHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC---HHHHCCCHHHHHHHH-CCCCHHHHHHHHHHHHHH
Q ss_conf 0112101461899999973199688999999999984216943---353428326786310-148948999999999872
Q 000288 91 SCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYL-DFFSTGVQRVALSTAANM 166 (1720)
Q Consensus 91 ~~~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lL-d~~~~~vqr~Al~aLsNl 166 (1720)
.+..+++.|+||.|+ .++..++.+++++|+|+|+||+.+.+. .++..|++++++.+| +..+..+++.|+|+++|+
T Consensus 152 ~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFV-KLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHHHHHTTHHHHHH-HHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 799999688678999-8856999999999999999995899166899997785999999973489889999999999999
Q ss_pred CCCCCCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 05999862688728079999955069988999999999998731399977799998399179999951479999998888
Q 000288 167 CKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASL 246 (1720)
Q Consensus 167 c~~~~~~~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~gli~~Lv~LL~~~~~~~~~~~l 246 (1720)
|...+......+.+++|.|..+|.+.|..++..+||+|++|+.+ .++..+.+++.|+++.|+.+|.+.
T Consensus 231 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~v~~Lv~lL~~~--------- 298 (528)
T 4b8j_A 231 CRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLHP--------- 298 (528)
T ss_dssp HCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---CHHHHHHHHHTTCHHHHHHHTTCS---------
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC---CHHHHHHHHHCCHHHHHHHHHCCC---------
T ss_conf 75899986999998999999997799878999999999998738---879999999748799999997188---------
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCC-CC----CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 966999999999998319989999999829859999963299-95----5654345346899778999999740317999
Q 000288 247 STPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS-GV----SANSAVPPALSRPAEQIFEIVNLANELLPPL 321 (1720)
Q Consensus 247 s~~i~~~al~~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~-~~----~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L 321 (1720)
+..++..++++|++|+.+++..++.+++.|+++.|..+|.+. .. .+.|++.++..++.++++.++.
T Consensus 299 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~--------- 369 (528)
T 4b8j_A 299 SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN--------- 369 (528)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHH---------
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH---------
T ss_conf 75577999999999972988999999974027899999758996889999999999997799999999997---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 88988888664110158754479999899878888885103567876104979999999878999999871148978999
Q 000288 322 PQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRH 401 (1720)
Q Consensus 322 ~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~~~llp~L~~vy~ss~~~~VR~ 401 (1720)
..++|.|++...+. +..||.
T Consensus 370 -----------------------------------------------------------~~~i~~L~~lL~~~-~~~v~~ 389 (528)
T 4b8j_A 370 -----------------------------------------------------------AGIIGPLVNLLQTA-EFDIKK 389 (528)
T ss_dssp -----------------------------------------------------------TTCHHHHHHHHHHS-CHHHHH
T ss_pred -----------------------------------------------------------CCCHHHHHHHHHCC-CHHHHH
T ss_conf -----------------------------------------------------------78799999998148-888999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCH----------HHHHHHHHHCH
Q ss_conf 99999999830489999999630023578999885047983287699999999951702----------46566786368
Q 000288 402 KCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPG----------TFSKMFVREGV 471 (1720)
Q Consensus 402 ~~L~~l~riv~~~~~~~L~~~l~~~~~ss~la~il~~~d~~lv~~aL~i~~~Ll~K~pd----------~f~~~f~REGV 471 (1720)
.++++|.+++...+++....++... +-..|..+|...|+.++..|+..+..|+...+. .|...|...|.
T Consensus 390 ~a~~aL~nl~~~~~~~~~~~l~~~~-~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 468 (528)
T 4b8j_A 390 EAAWAISNATSGGSHDQIKYLVSEG-CIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEG 468 (528)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHTT-CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCC-CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
T ss_conf 9999999997489999999999888-889999987489789999999999999998787543155542099999998786
Q ss_pred HHHHHHHHHC
Q ss_conf 9999997723
Q 000288 472 VHAVDQLILA 481 (1720)
Q Consensus 472 ~~~i~~L~~~ 481 (1720)
+..|+.|..+
T Consensus 469 ~~~l~~L~~~ 478 (528)
T 4b8j_A 469 LEKIENLQSH 478 (528)
T ss_dssp HHHHHHGGGC
T ss_pred HHHHHHHHCC
T ss_conf 9999998769
No 10
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=1.00 E-value=1 Score=290.38 Aligned_cols=387 Identities=19% Similarity=0.258 Sum_probs=326.4
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 62039999998212999999999999999998269985522110009399999841399998999999999999630697
Q 000288 10 QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFAPVLVGLLNHESNPDIMLLAARALTHLCDVLP 89 (1720)
Q Consensus 10 ~~~~l~~Ll~~L~s~~D~~~ql~Al~~L~~lL~~~~~~~l~~i~~~glVp~Lv~lL~~~~~~eiq~~AaraL~NL~~~~~ 89 (1720)
....++.|+..|+++ |+..+..|+..|++++....++++..+...+++|.|+++|.++++++++..|+|+|+|++...+
T Consensus 85 ~~~~i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 85 LQQELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp --CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 577899999987599-9999999999999984789996599998888899999984799977999999999999967998
Q ss_pred CCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC---HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 20112101461899999973199688999999999984216943---353428326786310148948999999999872
Q 000288 90 SSCAAVVHYGAVTCFVARLLTIEYMDLAEQSLQALKKISQEHPT---ACLRAGALMAVLSYLDFFSTGVQRVALSTAANM 166 (1720)
Q Consensus 90 ~~~~~iV~~GaIp~Lv~kLL~s~~~dL~Eqal~aL~nIS~~~~~---~Il~~GgL~~LL~lLd~~~~~vqr~Al~aLsNl 166 (1720)
+....+++.|+||.|+ .++..++.+++++|+|+|+||+.+.+. .++..|+++.++.++...+..+++.|+|+++|+
T Consensus 164 ~~~~~~~~~g~i~~Lv-~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFI-QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9899999779789999-998699889999999999998489952318999748599999996669888999999999998
Q ss_pred CCCC-CCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 0599-986268872807999995506998899999999999873139997779999839917999995147999999888
Q 000288 167 CKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 245 (1720)
Q Consensus 167 c~~~-~~~~~~~i~~~ip~L~~lL~~~D~~V~e~A~~aLs~L~~~~~~~~~~l~~li~~gli~~Lv~LL~~~~~~~~~~~ 245 (1720)
|.+. +........+++|.|..+|.+.|..++..+||+|.+|+.+ .++..+.+++.|+++.|+.+|.+.
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---~~~~~~~~~~~~~v~~Lv~lL~~~-------- 311 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG---PQEAIQAVIDVRIPKRLVELLSHE-------- 311 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS---CHHHHHHHHHTTCHHHHHHGGGCS--------
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC---CHHHHHHHHHCCCHHHHHHHHCCC--------
T ss_conf 679999985999973999999997699889999999999998679---889999999458389999997799--------
Q ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCC----CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 896699999999999831998999999982985999996329995----5654345346899778999999740317999
Q 000288 246 LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV----SANSAVPPALSRPAEQIFEIVNLANELLPPL 321 (1720)
Q Consensus 246 ls~~i~~~al~~L~nLas~s~~~t~~Ll~~gil~~L~~LL~~~~~----~~~~~~s~i~~~~~~qi~~vi~li~~LLP~L 321 (1720)
+..++..++++|++++.+++...+.+++.|+++.|..+|..... .+.|+++++..++.++
T Consensus 312 -~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~--------------- 375 (530)
T 1wa5_B 312 -STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQ--------------- 375 (530)
T ss_dssp -CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH---------------
T ss_pred -CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHH---------------
T ss_conf -7555799999999997299999999997463999999976997889999999999997599999---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHCCCCHHHH
Q ss_conf 88988888664110158754479999899878888885103567876104979999999-87899999987114897899
Q 000288 322 PQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFG-MDLLPVLIQIYGSSVNSPVR 400 (1720)
Q Consensus 322 ~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~pe~~~~f~-~~llp~L~~vy~ss~~~~VR 400 (1720)
.+.++ ..++|.|++.... .++.||
T Consensus 376 ------------------------------------------------------~~~~~~~~~l~~L~~lL~~-~~~~v~ 400 (530)
T 1wa5_B 376 ------------------------------------------------------IQAVIDANLIPPLVKLLEV-AEYKTK 400 (530)
T ss_dssp ------------------------------------------------------HHHHHHTTCHHHHHHHHHH-SCHHHH
T ss_pred ------------------------------------------------------HHHHHHCCCHHHHHHHHHC-CCHHHH
T ss_conf ------------------------------------------------------9999988889999999856-988899
Q ss_pred HHHHHHHHHHHHCCCH--HHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCH----------HHHHHHHH
Q ss_conf 9999999998304899--99999630023578999885047983287699999999951702----------46566786
Q 000288 401 HKCLSVIGKLMYFSSA--EMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPG----------TFSKMFVR 468 (1720)
Q Consensus 401 ~~~L~~l~riv~~~~~--~~L~~~l~~~~~ss~la~il~~~d~~lv~~aL~i~~~Ll~K~pd----------~f~~~f~R 468 (1720)
+.++++|.+++....+ +....++.. .+-..|..++...|+.+...|+..+..|+...+. .|...|..
T Consensus 401 ~~a~~aL~~l~~~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~ 479 (530)
T 1wa5_B 401 KEACWAISNASSGGLQRPDIIRYLVSQ-GCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK 479 (530)
T ss_dssp HHHHHHHHHHHHHTTTCTHHHHHHHHT-TCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHC-CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 999999999981699819999999988-8899999998089789999999999999996466652035433099999998
Q ss_pred HCHHHHHHHHHHC
Q ss_conf 3689999997723
Q 000288 469 EGVVHAVDQLILA 481 (1720)
Q Consensus 469 EGV~~~i~~L~~~ 481 (1720)
.|.+..+..|..+
T Consensus 480 ~g~~~~L~~L~~~ 492 (530)
T 1wa5_B 480 AGGMEKIFNCQQN 492 (530)
T ss_dssp TTHHHHHHGGGGC
T ss_pred CCCHHHHHHHHCC
T ss_conf 5829999998769
Done!