Query 000290
Match_columns 1717
No_of_seqs 483 out of 1780
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 16:00:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000290.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_70-74//hhsearch_pdb/000290hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5n_A E3 ubiquitin-protein li 1.0 1 1 132.4 4.9 137 421-564 2-157 (207)
2 3kv4_A PHD finger protein 8; e 1.0 1 1 131.0 -0.5 61 1360-1420 2-62 (447)
3 3kv5_D JMJC domain-containing 1.0 1 1 129.2 0.3 62 1359-1420 33-94 (488)
4 3o36_A Transcription intermedi 1.0 1 1 126.7 5.0 133 424-564 2-156 (184)
5 3kqi_A GRC5, PHD finger protei 1.0 1 1 118.1 0.9 63 1359-1421 6-68 (75)
6 2ro1_A Transcription intermedi 1.0 1 1 115.8 6.7 133 426-564 2-151 (189)
7 1wep_A PHF8; structural genomi 1.0 1 1 115.2 3.8 62 1358-1419 7-68 (79)
8 3pur_A Lysine-specific demethy 1.0 1 1 111.8 3.0 52 1370-1421 50-101 (528)
9 1we9_A PHD finger family prote 1.0 1 1 108.6 3.3 58 1360-1417 3-61 (64)
10 2xb1_A Pygopus homolog 2, B-ce 1.0 1 1 108.3 0.2 56 1363-1418 4-65 (105)
No 1
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=132.44 Aligned_cols=137 Identities=26% Similarity=0.504 Sum_probs=92.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCH
Q ss_conf 654321011200457710146888864433233766689999983143374255687323466-----656541134341
Q 000290 421 DVDGNGDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINKVGPIVTIGT-----SLRGAELFGIDL 495 (1717)
Q Consensus 421 ~~d~ndd~C~VC~~gG~LLlCD~Cp~afHl~CL~PpL~~iPeGdW~Cp~C~~~~~~p~~E~g~-----~~rg~ellgcD~ 495 (1717)
+++.++++|.+|+++|+||+||+|+++||+.|++|++..+|+|+|+|+.|.... .++.++++ ...+...-+...
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~-~~~~~~~c~~~~~s~k~~~~~~ls~ 80 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG-KPEVEYDCDNLQHSKKGKTAQGLSP 80 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS-SCSSCCSCC----------CCSSCH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCC-CCCCCCCCCCCCCHHHHHHHHCCCH
T ss_conf 878888989888999936776999984387158999888899887868426866-4664323333331011223310569
Q ss_pred HHHHHHHHCCCCEEE----------CCCCCCHHCCCCCC----CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 556888540654030----------36888100112346----6763568987602444310013499999988238767
Q 000290 496 YERVFLGTCNHLLVL----------NASSNTEQYIRYYN----PIDIPKVLQALLSSVQHVSLYLGICKAILHYWDIPES 561 (1717)
Q Consensus 496 cgr~Yh~kCerLlLe----------~~s~Dse~c~rYYs----~~Dl~~v~~vLy~sDiH~~~y~eI~~AI~~YW~iplN 561 (1717)
..+ ..|++++.. ..+++ ...+.||. |+|+..+.++|.... ...|..+...+.+..-++.|
T Consensus 81 ~~~---~~c~~il~~l~~~~~s~~F~~Pv~-~~~pdY~~iIk~PmdL~tI~~kl~~~~--~~~Y~s~~~f~~Dv~li~~N 154 (207)
T 3u5n_A 81 VDQ---RKCERLLLYLYCHELSIEFQEPVP-ASIPNYYKIIKKPMDLSTVKKKLQKKH--SQHYQIPDDFVADVRLIFKN 154 (207)
T ss_dssp HHH---HHHHHHHHHHHTSTTCGGGSSCCC-TTSTTHHHHCSSCCCHHHHHHHHSTTS--TTCCSSHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHCCCHHHHHCCCC-HHHCCHHHHHCCCCCHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHH
T ss_conf 999---999999999984642341221588-665007677078637999999985536--88869999999999999999
Q ss_pred CCC
Q ss_conf 677
Q 000290 562 VVP 564 (1717)
Q Consensus 562 l~~ 564 (1717)
...
T Consensus 155 a~~ 157 (207)
T 3u5n_A 155 CER 157 (207)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 2
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=131.00 Aligned_cols=61 Identities=36% Similarity=0.808 Sum_probs=55.4
Q ss_pred CCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 9997121158888999662866899861136545468226489552471575433778888
Q 000290 1360 HLEPVCDLCKQPYNSNLMYIHCETCQRWFHADAVELEESKLSDVVGFKCCRCRRIGGPECP 1420 (1717)
Q Consensus 1360 ~~~~vcCiC~kPy~~d~~MI~Cd~C~~WFHg~CVgLte~~a~~i~~Y~Cp~C~r~~~P~cp 1420 (1717)
...++||+|++||+++.+||+||.|++|||+.||||++..+..++.|+|+.|++.++|...
T Consensus 2 ~~~~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~~~ 62 (447)
T 3kv4_A 2 ASVPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIM 62 (447)
T ss_dssp -CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCCEE
T ss_pred CCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH
T ss_conf 9878598679937999975876788864140137867010047998999898663477200
No 3
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=1.00 E-value=1 Score=129.17 Aligned_cols=62 Identities=32% Similarity=0.751 Sum_probs=56.3
Q ss_pred CCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 99997121158888999662866899861136545468226489552471575433778888
Q 000290 1359 AHLEPVCDLCKQPYNSNLMYIHCETCQRWFHADAVELEESKLSDVVGFKCCRCRRIGGPECP 1420 (1717)
Q Consensus 1359 ~~~~~vcCiC~kPy~~d~~MI~Cd~C~~WFHg~CVgLte~~a~~i~~Y~Cp~C~r~~~P~cp 1420 (1717)
.....+||+|++||+++.+|||||.|++|||+.||||++..+..++.|+|+.|+..++|...
T Consensus 33 ~~~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~~ 94 (488)
T 3kv5_D 33 PPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLM 94 (488)
T ss_dssp CCCCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCSCEE
T ss_pred CCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCHH
T ss_conf 78887487679967999876874688875642106757443468887988998677685020
No 4
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=1.00 E-value=1 Score=126.74 Aligned_cols=133 Identities=25% Similarity=0.534 Sum_probs=89.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCC-CCCCCH
Q ss_conf 321011200457710146888864433233766689999983143374255687323466-------656541-134341
Q 000290 424 GNGDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINKVGPIVTIGT-------SLRGAE-LFGIDL 495 (1717)
Q Consensus 424 ~ndd~C~VC~~gG~LLlCD~Cp~afHl~CL~PpL~~iPeGdW~Cp~C~~~~~~p~~E~g~-------~~rg~e-llgcD~ 495 (1717)
.++++|.+|+++|+||+||+|+++||+.|++|++..+|+|+|+|+.|.... .++.++.+ ..+..+ ..+...
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~-~~~~e~dc~~~~~~s~~~~~~~~~~l~~ 80 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS-KPEVEYDCDAPSHNSEKKKTEGLVKLTP 80 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS-SCSSCCGGGCCSSCTTTSCCTTCCCCCH
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 999954117999905662999953081136898787999887892556865-5555334344443442110001123698
Q ss_pred HHHHHHHHCCCCEEE----------CCCCCCHHCCCCCC----CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 556888540654030----------36888100112346----6763568987602444310013499999988238767
Q 000290 496 YERVFLGTCNHLLVL----------NASSNTEQYIRYYN----PIDIPKVLQALLSSVQHVSLYLGICKAILHYWDIPES 561 (1717)
Q Consensus 496 cgr~Yh~kCerLlLe----------~~s~Dse~c~rYYs----~~Dl~~v~~vLy~sDiH~~~y~eI~~AI~~YW~iplN 561 (1717)
..+ ..|++++.. -.+++ ...+.||. ++|+..+.++|... ...|..+...+.+..-++.|
T Consensus 81 ~~~---~~c~~il~~l~~~~~s~~F~~Pv~-~~~pdY~~iIk~PmdL~tI~~kl~~~---~~~Y~s~~ef~~Dv~li~~N 153 (184)
T 3o36_A 81 IDK---RKCERLLLFLYCHEMSLAFQDPVP-LTVPDYYKIIKNPMDLSTIKKRLQED---YSMYSKPEDFVADFRLIFQN 153 (184)
T ss_dssp HHH---HHHHHHHHHHHHSTTCHHHHSCCC-TTSTTHHHHCSSCCCHHHHHHHHHST---TCSCCSHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHCHHHHHHCCCCC-CCCCCHHHHCCCCCCHHHHHHHHHHC---CCCCCCHHHHHHHHHHHHHH
T ss_conf 999---999999999984602333236433-67985655358887999999999846---77899999999999999999
Q ss_pred CCC
Q ss_conf 677
Q 000290 562 VVP 564 (1717)
Q Consensus 562 l~~ 564 (1717)
...
T Consensus 154 a~~ 156 (184)
T 3o36_A 154 CAE 156 (184)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 5
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=118.06 Aligned_cols=63 Identities=29% Similarity=0.713 Sum_probs=56.1
Q ss_pred CCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 999971211588889996628668998611365454682264895524715754337788888
Q 000290 1359 AHLEPVCDLCKQPYNSNLMYIHCETCQRWFHADAVELEESKLSDVVGFKCCRCRRIGGPECPY 1421 (1717)
Q Consensus 1359 ~~~~~vcCiC~kPy~~d~~MI~Cd~C~~WFHg~CVgLte~~a~~i~~Y~Cp~C~r~~~P~cp~ 1421 (1717)
...+++||+|++||+++.+||+||.|++|||+.||||++..+..++.|+|+.|+..+++....
T Consensus 6 ~~~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~~~~k 68 (75)
T 3kqi_A 6 MATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTLK 68 (75)
T ss_dssp TCCCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCCCCBC
T ss_pred CCCCEEEEECCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEE
T ss_conf 788823877789379997778737999877334066263444789989999896667978574
No 6
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=115.82 Aligned_cols=133 Identities=17% Similarity=0.297 Sum_probs=87.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC---CC-CCCCCCCHHHHHH
Q ss_conf 1011200457710146888864433233766689999983143374255687323466-65---65-4113434155688
Q 000290 426 GDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINKVGPIVTIGT-SL---RG-AELFGIDLYERVF 500 (1717)
Q Consensus 426 dd~C~VC~~gG~LLlCD~Cp~afHl~CL~PpL~~iPeGdW~Cp~C~~~~~~p~~E~g~-~~---rg-~ellgcD~cgr~Y 500 (1717)
++.|.+|+++|+||+||+|+++||++|+.|++..+|.|+|+|+.|...... ..+.+. +. +. +..-++....+
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~~-~~~~g~~s~~~~~~~~~~~~m~~~~~-- 78 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL-KEEDGSLSLDGADSTGVVAKLSPANQ-- 78 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCCT-TCSCSSCCSSSSSSSCSSCSSCHHHH--
T ss_pred CCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHH--
T ss_conf 882764799994568999983331022898756689987889270477777-75544201134542000147999999--
Q ss_pred HHHCCCCEEE-CCCCCCHH-----CCCCCC------CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8540654030-36888100-----112346------6763568987602444310013499999988238767677
Q 000290 501 LGTCNHLLVL-NASSNTEQ-----YIRYYN------PIDIPKVLQALLSSVQHVSLYLGICKAILHYWDIPESVVP 564 (1717)
Q Consensus 501 h~kCerLlLe-~~s~Dse~-----c~rYYs------~~Dl~~v~~vLy~sDiH~~~y~eI~~AI~~YW~iplNl~~ 564 (1717)
..|++++.. ..+..+|. -..||. +||+..+.++|...+ ...|..+...+.+..-++.|...
T Consensus 79 -~~c~~iL~~l~~~~~s~pF~~pV~~~Yy~iIk~~~PMDL~tIk~kL~~~~--~~~Y~s~~eF~~Dv~Lif~N~~~ 151 (189)
T 2ro1_A 79 -RKCERVLLALFCHEPCRPLHQLATDSTFSLDQPGGTLDLTLIRARLQEKL--SPPYSSPQEFAQDVGRMFKQFNK 151 (189)
T ss_dssp -HHHHHHHHHHHHSTTHHHHHSCSCCTTCSSSCSSCCCCHHHHHHHHHTSS--SSCCSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHCCCCCCCHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf -99999975303585321114789756523004788226999999996699--76669999999999999999999
No 7
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=115.23 Aligned_cols=62 Identities=40% Similarity=0.814 Sum_probs=55.6
Q ss_pred CCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 89999712115888899966286689986113654546822648955247157543377888
Q 000290 1358 VAHLEPVCDLCKQPYNSNLMYIHCETCQRWFHADAVELEESKLSDVVGFKCCRCRRIGGPEC 1419 (1717)
Q Consensus 1358 ~~~~~~vcCiC~kPy~~d~~MI~Cd~C~~WFHg~CVgLte~~a~~i~~Y~Cp~C~r~~~P~c 1419 (1717)
..+.+.+||+|++||+++.+||+||.|++|||+.||||++..+..++.|+|+.|+..++|..
T Consensus 7 ~~~~~~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~ 68 (79)
T 1wep_A 7 GMALVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSI 68 (79)
T ss_dssp CCCCCCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSCB
T ss_pred CCCCCCCEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 76678608873990689985677678997387021574633126898499988666668772
No 8
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=1.00 E-value=1 Score=111.80 Aligned_cols=52 Identities=25% Similarity=0.554 Sum_probs=44.3
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 8889996628668998611365454682264895524715754337788888
Q 000290 1370 QPYNSNLMYIHCETCQRWFHADAVELEESKLSDVVGFKCCRCRRIGGPECPY 1421 (1717)
Q Consensus 1370 kPy~~d~~MI~Cd~C~~WFHg~CVgLte~~a~~i~~Y~Cp~C~r~~~P~cp~ 1421 (1717)
.+++++.+||+||.|++|||+.||||++..++.++.|+||.|...++|...+
T Consensus 50 ~~~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~gps~~k 101 (528)
T 3pur_A 50 HHKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTGHSIRY 101 (528)
T ss_dssp TTTTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHHCSCEEC
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCEE
T ss_conf 6899699877789998678972899994684189719995784777995234
No 9
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=108.58 Aligned_cols=58 Identities=24% Similarity=0.684 Sum_probs=50.8
Q ss_pred CCCCEEE-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 9997121-158888999662866899861136545468226489552471575433778
Q 000290 1360 HLEPVCD-LCKQPYNSNLMYIHCETCQRWFHADAVELEESKLSDVVGFKCCRCRRIGGP 1417 (1717)
Q Consensus 1360 ~~~~vcC-iC~kPy~~d~~MI~Cd~C~~WFHg~CVgLte~~a~~i~~Y~Cp~C~r~~~P 1417 (1717)
+++..|| +|++||+++.+||+||.|++|||+.||||+...++.+..|+|+.|+.++..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCEECCCCCCCCCC
T ss_conf 88878997898805999887874699998992434768467468980899797695888
No 10
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=108.33 Aligned_cols=56 Identities=27% Similarity=0.614 Sum_probs=48.4
Q ss_pred CEEECCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCCC-----CCEEECCCCCCCCCC
Q ss_conf 71211588889996628668-998611365454682264895-----524715754337788
Q 000290 1363 PVCDLCKQPYNSNLMYIHCE-TCQRWFHADAVELEESKLSDV-----VGFKCCRCRRIGGPE 1418 (1717)
Q Consensus 1363 ~vcCiC~kPy~~d~~MI~Cd-~C~~WFHg~CVgLte~~a~~i-----~~Y~Cp~C~r~~~P~ 1418 (1717)
..|.+|++||+++..||+|| .|++|||+.||||++..++.+ ..|+||.|.....+.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~ 65 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGS 65 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCC
T ss_conf 79879999448999898826875602630347868899986312789879991440838779
Done!