Your job contains 1 sequence.
>000291
MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESC
GTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEM
LKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVL
KQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTT
KAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQ
ELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQ
ALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHN
GNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSARWTALQIL
QSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQ
PLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIR
HVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASH
FERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL
MAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKA
VLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQL
KRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLKSF
CKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLA
NMIYPVLLETIIKENWWVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYK
ALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLL
WQTENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLEDEFDWSLSPEHNLCS
DKPVFEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGK
SSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDK
PENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVE
TTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANA
TASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKP
SANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASS
NAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDSTV
NAMYTVTRQRLDMFTSEEQDILSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVF
NYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDL
VDEFIGKYFRRPRSGGNREPSLPPVPEEKTVDQD
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000291
(1714 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2061151 - symbol:NRPD1B "nuclear RNA polymeras... 2710 0. 3
TAIR|locus:2015163 - symbol:NRPD1A "nuclear RNA polymeras... 449 3.9e-87 5
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg... 423 4.7e-54 5
POMBASE|SPBC651.08c - symbol:rpc1 "DNA-directed RNA polym... 381 1.2e-48 6
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ... 365 1.3e-45 4
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c... 361 7.0e-42 6
FB|FBgn0030687 - symbol:CG17209 species:7227 "Drosophila ... 332 2.3e-41 4
ASPGD|ASPL0000054301 - symbol:AN0809 species:162425 "Emer... 355 4.5e-40 4
UNIPROTKB|G4MT89 - symbol:MGG_04652 "DNA-directed RNA pol... 418 2.8e-39 5
ASPGD|ASPL0000047704 - symbol:AN10316 species:162425 "Eme... 334 6.1e-39 5
WB|WBGene00004411 - symbol:rpc-1 species:6239 "Caenorhabd... 324 1.3e-38 4
UNIPROTKB|J9NW09 - symbol:POLR2A "DNA-directed RNA polyme... 352 3.4e-38 5
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme... 352 6.3e-38 5
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme... 352 6.3e-38 5
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme... 352 6.3e-38 5
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d... 352 6.3e-38 5
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir... 352 6.3e-38 5
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ... 330 1.9e-37 6
SGD|S000005642 - symbol:RPO31 "RNA polymerase III largest... 310 6.5e-37 4
UNIPROTKB|I3LJR4 - symbol:POLR2A "DNA-directed RNA polyme... 352 7.2e-37 3
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)... 349 8.5e-37 5
GENEDB_PFALCIPARUM|PF13_0150 - symbol:PF13_0150 "DNA-dire... 239 1.9e-36 6
UNIPROTKB|Q8IE49 - symbol:PF13_0150 "DNA-directed RNA pol... 239 1.9e-36 6
CGD|CAL0002215 - symbol:orf19.3103 species:5476 "Candida ... 299 2.6e-36 5
UNIPROTKB|Q5ZL98 - symbol:POLR3A "DNA-directed RNA polyme... 339 3.1e-36 3
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic... 406 3.6e-36 4
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer... 406 3.6e-36 4
UNIPROTKB|F1NIK7 - symbol:POLR3A "DNA-directed RNA polyme... 333 1.3e-35 3
DICTYBASE|DDB_G0277199 - symbol:rpc1 "RNA polymerase III,... 309 2.8e-35 4
ZFIN|ZDB-GENE-050208-103 - symbol:polr3a "polymerase (RNA... 305 1.0e-34 5
UNIPROTKB|J9P629 - symbol:POLR3A "DNA-directed RNA polyme... 330 1.5e-34 3
UNIPROTKB|O14802 - symbol:POLR3A "DNA-directed RNA polyme... 332 1.9e-34 3
UNIPROTKB|E9PTB6 - symbol:Polr3a "DNA-directed RNA polyme... 328 2.1e-34 3
UNIPROTKB|A4IF62 - symbol:POLR3A "DNA-directed RNA polyme... 330 3.1e-34 3
UNIPROTKB|F1S2E6 - symbol:POLR3A "DNA-directed RNA polyme... 328 5.1e-34 3
UNIPROTKB|E2QXD8 - symbol:POLR3A "DNA-directed RNA polyme... 323 8.1e-34 3
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd... 331 4.8e-29 4
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer... 331 4.8e-29 4
UNIPROTKB|G4NBX7 - symbol:MGG_01158 "DNA-directed RNA pol... 213 3.4e-28 6
CGD|CAL0001661 - symbol:RPA190 species:5476 "Candida albi... 166 6.2e-28 5
SGD|S000005868 - symbol:RPA190 "RNA polymerase I largest ... 147 6.7e-28 7
UNIPROTKB|Q6NX41 - symbol:POLR2A "DNA-directed RNA polyme... 305 1.7e-27 2
POMBASE|SPBC4C3.05c - symbol:nuc1 "DNA-directed RNA polym... 165 3.7e-26 7
WB|WBGene00012999 - symbol:rpoa-1 species:6239 "Caenorhab... 149 6.9e-26 7
TAIR|locus:2075190 - symbol:AT3G46630 "AT3G46630" species... 291 4.1e-24 1
TAIR|locus:2076661 - symbol:NRPA1 "nuclear RNA polymerase... 187 4.5e-23 6
TAIR|locus:504956149 - symbol:AT1G45230 "AT1G45230" speci... 253 4.4e-21 2
FB|FBgn0019938 - symbol:RpI1 "RNA polymerase I subunit" s... 195 5.4e-20 6
UNIPROTKB|E1BIX2 - symbol:POLR1A "DNA-directed RNA polyme... 144 7.9e-20 7
UNIPROTKB|B9ZVN9 - symbol:POLR1A "DNA-directed RNA polyme... 138 1.0e-19 6
RGD|620824 - symbol:Polr1a "polymerase (RNA) I polypeptid... 146 1.5e-19 6
UNIPROTKB|G3V7B7 - symbol:Polr1a "DNA-directed RNA polyme... 146 1.5e-19 6
ZFIN|ZDB-GENE-030131-5286 - symbol:polr1a "polymerase (RN... 152 2.7e-19 6
MGI|MGI:1096397 - symbol:Polr1a "polymerase (RNA) I polyp... 142 4.9e-19 6
UNIPROTKB|F1SVC3 - symbol:POLR1A "DNA-directed RNA polyme... 141 5.0e-19 6
UNIPROTKB|O95602 - symbol:POLR1A "DNA-directed RNA polyme... 138 2.1e-18 5
UNIPROTKB|J9P5G4 - symbol:POLR1A "DNA-directed RNA polyme... 142 3.0e-18 6
UNIPROTKB|E2R0G4 - symbol:POLR1A "DNA-directed RNA polyme... 142 3.3e-18 6
DICTYBASE|DDB_G0275759 - symbol:rpa1 "RNA polymerase I, l... 160 3.0e-17 5
TAIR|locus:2179979 - symbol:KTF1 "AT5G04290" species:3702... 270 1.2e-16 2
UNIPROTKB|F1LQN7 - symbol:Polr1a "DNA-directed RNA polyme... 146 1.7e-13 3
UNIPROTKB|G3N258 - symbol:TNRC6A "Uncharacterized protein... 220 2.8e-12 2
UNIPROTKB|F1MX25 - symbol:TNRC6A "Uncharacterized protein... 218 4.3e-12 2
UNIPROTKB|J9PAE6 - symbol:TNRC6A "Uncharacterized protein... 195 1.2e-09 2
UNIPROTKB|F1PMK2 - symbol:TNRC6A "Uncharacterized protein... 195 1.3e-09 2
UNIPROTKB|J9NXD6 - symbol:TNRC6B "Uncharacterized protein... 196 2.3e-09 2
UNIPROTKB|F1PND4 - symbol:TNRC6B "Uncharacterized protein... 206 2.7e-09 3
UNIPROTKB|J9JHC8 - symbol:TNRC6B "Uncharacterized protein... 196 3.4e-09 2
UNIPROTKB|E9PTW3 - symbol:Dspp "Dentin sialophosphoprotei... 175 6.5e-09 1
SGD|S000001800 - symbol:SRP40 "Nucleolar serine-rich prot... 166 1.5e-08 1
UNIPROTKB|F1NAU7 - symbol:Gga.50341 "Uncharacterized prot... 184 1.7e-08 2
UNIPROTKB|H0Y720 - symbol:TNRC6B "Trinucleotide repeat-co... 186 2.1e-08 2
UNIPROTKB|Q9UPQ9 - symbol:TNRC6B "Trinucleotide repeat-co... 186 4.0e-08 2
MGI|MGI:109172 - symbol:Dspp "dentin sialophosphoprotein"... 167 4.6e-08 1
UNIPROTKB|F1LSM1 - symbol:Tnrc6b "Protein Tnrc6b" species... 187 7.9e-08 3
MGI|MGI:2385292 - symbol:Tnrc6a "trinucleotide repeat con... 174 9.1e-08 2
POMBASE|SPBC1711.05 - symbol:SPBC1711.05 "nucleocytoplasm... 159 1.1e-07 1
DICTYBASE|DDB_G0289901 - symbol:DDB_G0289901 "unknown" sp... 177 1.5e-07 2
ZFIN|ZDB-GENE-081022-126 - symbol:zgc:194578 "zgc:194578"... 160 1.5e-07 1
MGI|MGI:2443730 - symbol:Tnrc6b "trinucleotide repeat con... 182 2.3e-07 3
WB|WBGene00002263 - symbol:lea-1 species:6239 "Caenorhabd... 181 2.3e-07 2
UNIPROTKB|F1M3I2 - symbol:RGD1562799 "Protein RGD1562799"... 156 3.3e-07 1
UNIPROTKB|F1M6G5 - symbol:Tnrc6a "Protein Tnrc6a" species... 168 3.8e-07 2
RGD|1307268 - symbol:Tnrc6a "trinucleotide repeat contain... 168 3.9e-07 2
UNIPROTKB|D4A372 - symbol:Tnrc6a "Trinucleotide repeat co... 168 4.1e-07 2
CGD|CAL0004905 - symbol:IFF6 species:5476 "Candida albica... 158 5.1e-07 1
UNIPROTKB|Q59XL0 - symbol:IFF6 "Putative uncharacterized ... 158 5.1e-07 1
DICTYBASE|DDB_G0271670 - symbol:DDB_G0271670 species:4468... 149 9.2e-07 1
UNIPROTKB|F1MY06 - symbol:TNRC6B "Uncharacterized protein... 183 9.4e-07 3
ZFIN|ZDB-GENE-030131-7440 - symbol:si:dkey-54k13.1 "si:dk... 158 9.4e-07 1
ZFIN|ZDB-GENE-061207-48 - symbol:si:dkey-10p5.9 "si:dkey-... 156 1.3e-06 1
UNIPROTKB|J9NUK0 - symbol:TNRC6C "Uncharacterized protein... 154 2.3e-06 1
UNIPROTKB|Q8NDV7 - symbol:TNRC6A "Trinucleotide repeat-co... 163 2.8e-06 2
UNIPROTKB|P0A8T7 - symbol:rpoC "RNA polymerase, beta' sub... 170 2.8e-06 4
UNIPROTKB|E1BQG1 - symbol:TNRC6B "Uncharacterized protein... 180 3.0e-06 3
UNIPROTKB|G4MVJ0 - symbol:MGG_08881 "Uncharacterized prot... 153 6.5e-06 2
FB|FBgn0036203 - symbol:Muc68D "Mucin 68D" species:7227 "... 149 7.0e-06 1
UNIPROTKB|Q9NZW4 - symbol:DSPP "Dentin sialophosphoprotei... 164 9.2e-06 2
MGI|MGI:3645678 - symbol:Flg2 "filaggrin family member 2"... 166 2.1e-05 2
DICTYBASE|DDB_G0271916 - symbol:rtoA "unknown" species:44... 136 2.3e-05 1
WARNING: Descriptions of 28 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2061151 [details] [associations]
symbol:NRPD1B "nuclear RNA polymerase D1B" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=ISS]
[GO:0000418 "DNA-directed RNA polymerase IV complex" evidence=IPI]
[GO:0006306 "DNA methylation" evidence=RCA;IMP] [GO:0000419
"DNA-directed RNA polymerase V complex" evidence=IDA;IPI]
[GO:0030880 "RNA polymerase complex" evidence=IPI] [GO:0035194
"posttranscriptional gene silencing by RNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016604 "nuclear body" evidence=IDA] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IGI;IMP] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051567 "histone H3-K9 methylation" evidence=RCA] [GO:0051726
"regulation of cell cycle" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR015801 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 SMART:SM00663 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0005507 GO:GO:0048038 GO:GO:0009308
Gene3D:3.10.450.40 GO:GO:0030422 GO:GO:0006306 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0016604 EMBL:AF002109 GO:GO:0003899
eggNOG:COG0086 GO:GO:0000418 InterPro:IPR021602 Pfam:PF11523
EMBL:AY826516 EMBL:AY927744 EMBL:DQ020656 IPI:IPI00537496
PIR:D84824 PIR:E84824 RefSeq:NP_181532.2 UniGene:At.37106
ProteinModelPortal:Q5D869 SMR:Q5D869 DIP:DIP-48678N IntAct:Q5D869
STRING:Q5D869 PaxDb:Q5D869 PRIDE:Q5D869 EnsemblPlants:AT2G40030.1
GeneID:818591 KEGG:ath:AT2G40030 TAIR:At2g40030
HOGENOM:HOG000082864 InParanoid:Q5D869 KO:K16251 OMA:QSDSWDG
PhylomeDB:Q5D869 ProtClustDB:CLSN2681712 Genevestigator:Q5D869
GO:GO:0000419 Uniprot:Q5D869
Length = 1976
Score = 2710 (959.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 547/869 (62%), Positives = 663/869 (76%)
Query: 116 EVKEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAM 175
EVKE+L+RIPEE+RKKL KG+ PQ+GYILEYLPVPPNCLSVP+ SDG STMS D S
Sbjct: 179 EVKEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEASDGFSTMSVDPSRIE 238
Query: 176 LKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQ- 234
LK VLK+V I+SSRSG NFES + E++++ V YL+VRGTAK++R++D R+GVS+
Sbjct: 239 LKDVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGTAKAARNIDMRYGVSKI 298
Query: 235 DPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVH 294
+S++KAW EKMRTLFIRKGSGFSSRSVITGDAY+ VNE+G+P EIAQRITFEERV+VH
Sbjct: 299 SDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVH 358
Query: 295 NINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTT 354
N YLQ+LVD+KLCL+Y+ GS++YSLR+GSKGHT L+PGQVVHRR+MDGD VFINRPPTT
Sbjct: 359 NRGYLQKLVDDKLCLSYTQGSTTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTT 418
Query: 355 HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ 414
HKHSLQAL VYVH+D+TVKINPL+C PLSADFDGDC+HLFYPQSL+AKAEV+ELFSVEKQ
Sbjct: 419 HKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQ 478
Query: 415 LLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSA-R 473
LLSSH G L LQ+ +D+LLSL+VM ++ FLDKA QQLAM+ LP PAL K+ S
Sbjct: 479 LLSSHTGQLILQMGSDSLLSLRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKSGPA 538
Query: 474 WTALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVL 533
WT QILQ P GDR+L+ S++LK DF D + S+INEIVTSIF EKGP+E L
Sbjct: 539 WTVFQILQLAFPERLSCKGDRFLVDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETL 598
Query: 534 EFFDSLQPLLMENLFADGFSVSLEDFSLSKA---ALWN-IQKEIQALYSLLYHRMSTQNE 589
FFDSLQPLLME+LFA+GFS+SLED S+S+A + N I +EI + S L R+S ++E
Sbjct: 599 GFFDSLQPLLMESLFAEGFSLSLEDLSMSRADMDVIHNLIIREISPMVSRL--RLSYRDE 656
Query: 590 LVDLQIENHIRHVKMLVAKFILKSSTLGYLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFY 649
L Q+EN I VK + A F+LKS ++ LI GFLGLQLSD+ KFY
Sbjct: 657 L---QLENSIHKVKEVAANFMLKSYSIRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFY 713
Query: 650 SKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRG 709
+KTLVED+A +R Y + + +G++KGCFFHGLDPYEEM HSI+ REVIVRSSRG
Sbjct: 714 TKTLVEDMAIFCKRKYGRISS--SGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRG 771
Query: 710 LSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHS-LFPAGEPVGVL 768
L+EPGTLFKNLMAVLRD+VI DGTVRN CSNS+IQF Y V++ + H LF AGEPVGVL
Sbjct: 772 LAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGVDSERGHQGLFEAGEPVGVL 831
Query: 769 AATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYC 828
AATAMSNPAYKAVLDSSP+SN+SWELMKE+LLC+V+F N DRRVILYLN+C CG+++C
Sbjct: 832 AATAMSNPAYKAVLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFC 891
Query: 829 QERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISD----DEGLVGHIHLNKILLEDLRI 884
QE AA V+N+L +VSLKD AVEFL+EY+K IS+ D L GHIHLNK LL+D I
Sbjct: 892 QENAACTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIFGIDSCLHGHIHLNKTLLQDWNI 951
Query: 885 SMHDILPKCQETLXXXXXXXXXXXXXXXXXNTSLSISECCSFQQSCADKRSNMPCLMFVL 944
SM DI KC++ + TSLS+SECCSF+ C K S+MPCL F
Sbjct: 952 SMQDIHQKCEDVINSLGQKKKKKATDDFK-RTSLSVSECCSFRDPCGSKGSDMPCLTFSY 1010
Query: 945 RGASDSYLDKLSGVLANMIYPVLLETIIK 973
A+D L++ VL N +YPVLLE +IK
Sbjct: 1011 N-ATDPDLERTLDVLCNTVYPVLLEIVIK 1038
Score = 1172 (417.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 298/768 (38%), Positives = 403/768 (52%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
QRLSASV MV+KGVLKEH+ILLAN+MTC+G ++GFNSGGYKAL+RSLN++ PFTEATL
Sbjct: 1130 QRLSASVRMVSKGVLKEHIILLANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIA 1189
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDF 1099
PRKCFEKAAEK HTD+LS+VV +CSWGK V VGTGS+F+LLW + + + DVY F
Sbjct: 1190 PRKCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSF 1249
Query: 1100 LHMVRSSTGIEELDTGCLGEEVDGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWL-ENK 1158
L MV S+T + G +V E+ +W+ SPE + +P FED + Q+ E K
Sbjct: 1250 LQMVISTTNADAF-VSSPGFDVTE-EEMAEWAESPERDSALGEPKFEDSADFQNLHDEGK 1307
Query: 1159 QENANWDSEAD----CRKSSEDKWEKLGTSLEKPSSGW-RT-----EGAWGKSSDDKLEK 1208
ANW+ + C SE K P S W +T E AW + K +
Sbjct: 1308 PSGANWEKSSSWDNGCSGGSEWGVSKSTGGEANPESNWEKTTNVEKEDAWSSWNTRKDAQ 1367
Query: 1209 AGSPSRKPSGWGTEASWGES-SCDKWENVGSPAAK-SFSEWGTEASWGKSFGDKPENVSP 1266
S S WG + ++ + WE SPA K S E + +G K +VS
Sbjct: 1368 ESSKSDSGGAWGIKTKDADADTTPNWET--SPAPKDSIVPENNEPT-SDVWGHK--SVSD 1422
Query: 1267 AAKTSSGWGSE---ASWGKSSGDRQENVGGSASKPLSGWGAKAS-WGKSSEDKLEEVETT 1322
+ WG+E A+WG + V GS+ K S + A+ WG S DK
Sbjct: 1423 KSWDKKNWGTESAPAAWGSTDAA----VWGSSDKKNSETESDAAAWG--SRDKNN----- 1471
Query: 1323 VAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATA 1382
+ S G W+K S T A + + G A +S + E A
Sbjct: 1472 -SDVGSGAGVLGPWNKKSSETESNGATWGSSDKTKSGAAAWNSWDKKN-IETDSEPAAWG 1529
Query: 1383 SWGRNGSEENSGWDTKASW-KTKALDKLDDVGSAV---ENSSSVWG--AREDFSTKGWED 1436
S G+ SE SG +W K K+ + G + +NS + G A ++ K +
Sbjct: 1530 SQGKKNSETESGPAAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDT 1589
Query: 1437 SSKPSANEKSIVHQIGGWNVPDAKGT----DDSCWGKQ--KLTENAKGTDD-SSWGKQKH 1489
S P+A + W D + D + WG + K +E G SWG+
Sbjct: 1590 KSGPAAWGST---DAAAWGSSDKNNSETESDAAAWGSRNKKTSEIESGAGAWGSWGQPSP 1646
Query: 1490 T-ENESPQPASSNAWDLPDATGGSET---EMQVWGQSRKEPFKKNRGWASSSG-EWKGKK 1544
T E++ N W T E E WG K+ F + GW++ G +WKG +
Sbjct: 1647 TAEDKDTNEDDRNPWVSLKETKSREKDDKERSQWGNPAKK-FPSSGGWSNGGGADWKGNR 1705
Query: 1545 NRPPRSPGVVNDDSTVNAMYTVTRQRLDMFTSEEQDILSDVEPIMRSIRRIMHQSGYNDG 1604
N PR P + + M+T TRQRLD FTSEEQ++LSDVEP+MR++R+IMH S Y DG
Sbjct: 1706 NHTPRPP---RSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDG 1762
Query: 1605 DRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQDFS 1664
D +S DDK+F+ + + N+HP K K+G+G+D VDKH F DSRC FVVSTDG++QDFS
Sbjct: 1763 DPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFS 1822
Query: 1665 YRKCLESFIRGKYPDLVDEFIGKYFRRPRSGGNRE----PSLPPVPEE 1708
YRK L +++ KYPD +EFI KYF +PR GNR+ + PP E+
Sbjct: 1823 YRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSGNRDRNNQDATPPGEEQ 1870
Score = 388 (141.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 75/124 (60%), Positives = 95/124 (76%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESC 60
MEE ++S IL+G+IVGI F LA+ EIC SIS+ +I+H SQL N FLGLPLEFGKCESC
Sbjct: 1 MEEESTSEILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESC 60
Query: 61 GTSEPGKCEGHFGYIELPIPIYHPSHISELK--LTMYAFQ-LQIK-----NDGVAQRLLS 112
G +EP KCEGHFGYI+LP+PIYHP+H++ELK L++ + L+IK + G+A RLL
Sbjct: 61 GATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAKGTSGGLADRLLG 120
Query: 113 SCCE 116
CCE
Sbjct: 121 VCCE 124
Score = 53 (23.7 bits), Expect = 0., Sum P(3) = 0.
Identities = 14/74 (18%), Positives = 30/74 (40%)
Query: 1485 GKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKK 1544
G T+ +S P+ + A A S ++ Q QS+ + +++ + S + + +
Sbjct: 1882 GDDFQTQTQSQSPSQTRAQSPSQAQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQS 1941
Query: 1545 NRPPRSPGVVNDDS 1558
+SP S
Sbjct: 1942 QSQSQSPSQTQTQS 1955
Score = 43 (20.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 13/76 (17%), Positives = 31/76 (40%)
Query: 1478 GTDD--SSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWAS 1535
G DD + Q ++ + P+ + A S+++ Q QS+ + +++ +
Sbjct: 1881 GGDDFQTQTQSQSPSQTRAQSPSQAQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQ 1940
Query: 1536 SSGEWKGKKNRPPRSP 1551
S + + +SP
Sbjct: 1941 SQSQSQSPSQTQTQSP 1956
Score = 39 (18.8 bits), Expect = 4.4e-29, Sum P(2) = 4.4e-29
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 1496 QPASSNAWDLPDATGG----SETEMQVWGQSRKEPFKKNRGWASSSGEWKGKK 1544
QP S + + G ++T +Q W S ++ +K +S G+ K KK
Sbjct: 922 QPTISEIFGIDSCLHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKKK 974
Score = 37 (18.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 20/108 (18%), Positives = 39/108 (36%)
Query: 1419 SSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKG 1478
+ S+ +DF T+ S PS Q + + S Q +++
Sbjct: 1875 NQSIGNGGDDFQTQ--TQSQSPSQTRAQSPSQAQAQSPSQTQSQSQSQSQSQSQSQSQSQ 1932
Query: 1479 TDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEP 1526
+ S Q ++++SP + + P S+T+ Q S + P
Sbjct: 1933 SQSQSQS-QSQSQSQSPSQTQTQS---P-----SQTQAQAQSPSSQSP 1971
>TAIR|locus:2015163 [details] [associations]
symbol:NRPD1A "nuclear RNA polymerase D1A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA;IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0031047 "gene silencing by RNA"
evidence=RCA;IMP] [GO:0000418 "DNA-directed RNA polymerase IV
complex" evidence=IDA;IPI] [GO:0007267 "cell-cell signaling"
evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010495
"long-distance posttranscriptional gene silencing" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015801
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011000
GO:GO:0003677 GO:GO:0007267 GO:GO:0006351 GO:GO:0005507
GO:GO:0048038 GO:GO:0009308 Gene3D:3.10.450.40 GO:GO:0030422
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0006346
EMBL:AC010795 EMBL:AY826515 EMBL:DQ020657 IPI:IPI00523111
PIR:D96655 RefSeq:NP_001185298.1 RefSeq:NP_176490.2
UniGene:At.36192 ProteinModelPortal:Q9LQ02 SMR:Q9LQ02
DIP:DIP-48679N STRING:Q9LQ02 PaxDb:Q9LQ02 PRIDE:Q9LQ02
EnsemblPlants:AT1G63020.1 EnsemblPlants:AT1G63020.2 GeneID:842605
KEGG:ath:AT1G63020 TAIR:At1g63020 eggNOG:COG0086
HOGENOM:HOG000083760 InParanoid:Q9LQ02 KO:K16250 OMA:HQHSLIA
PhylomeDB:Q9LQ02 ProtClustDB:CLSN2680546 Genevestigator:Q9LQ02
GO:GO:0000418 GO:GO:0010495 InterPro:IPR021602 Pfam:PF11523
Uniprot:Q9LQ02
Length = 1453
Score = 449 (163.1 bits), Expect = 3.9e-87, Sum P(5) = 3.9e-87
Identities = 132/399 (33%), Positives = 209/399 (52%)
Query: 196 FESQEVESNDLQLAVGQYLEVRG-TAKSSRDVDARFGVSQDPNSTTK-AWLEKMRTLFIR 253
FE +E + + QY + T SS+D + Q + T K L M+ + +
Sbjct: 259 FEGNTLELSSRVMECMQYSRLFSETVSSSKDSANPY---QKKSDTPKLCGLRFMKDVLLG 315
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHN-----INYLQELVDNKLC 308
K S + R+V+ GD ++NEIG+P IA+R+ E +N N +++ L+DNK
Sbjct: 316 KRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFVPTLLDNKE- 374
Query: 309 LTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-H 367
+ G +++ L+ G + R +MDGDTV +NRPP+ H+HSL A++V +
Sbjct: 375 MHVRRGDRLVAIQVND-----LQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILP 429
Query: 368 DDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQL 427
V +NP+ C P DFDGDC+H + PQS+ AK E+ EL +++KQL++ NG L L
Sbjct: 430 TTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINRQNGRNLLSL 489
Query: 428 ATDALLS--LKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKARCSA---RWTALQILQS 482
D+L + L + K +L++A QQL M+ LP PA+ KA S+ +WT +Q+
Sbjct: 490 GQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAIIKASPSSTEPQWTGMQLFGM 549
Query: 483 VLPPGFDSCG--DRYLIKKSEVL---KGD-FDRDTIPSVINEIVTSIFFEKGPEEVLEFF 536
+ PPGFD + ++ E+L +G + RD + I ++ +KG +VL+
Sbjct: 550 LFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNFIERLLKH---DKG--KVLDII 604
Query: 537 DSLQPLLMENLFADGFSVSLEDFSLSK--AALWNIQKEI 573
S Q +L + L G SVSL D LS + N+ +EI
Sbjct: 605 YSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEI 643
Score = 240 (89.5 bits), Expect = 3.9e-87, Sum P(5) = 3.9e-87
Identities = 80/308 (25%), Positives = 140/308 (45%)
Query: 676 YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTV 735
YG+I+ F GL+P E HS+++R+ + L PGTL + LM +RD+ YDGTV
Sbjct: 793 YGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADL--PGTLSRRLMFFMRDIYAAYDGTV 850
Query: 736 RNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELM 795
RN N ++QF Y + GE +G L+A A+S AY A LD S + L+
Sbjct: 851 RNSFGNQLVQFTYETDGPVEDI---TGEALGSLSACALSEAAYSA-LDQPISLLETSPLL 906
Query: 796 --KEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFL 853
K +L C ++ + LYL++ +K+ E + +KN L+++S + +
Sbjct: 907 NLKNVLEC--GSKKGQREQTMSLYLSEYLSKKKHGFEYGSLEIKNHLEKLSFSEIVSTSM 964
Query: 854 IEYKKPEIISDD-EGLVGHIHLNKILLEDLRISMHDILPKCQETLXXXXXXXXXXXXXXX 912
I + V H H+++ +L+ ++S ++ E
Sbjct: 965 IIFSPSSNTKVPLSPWVCHFHISEKVLKRKQLSAESVVSSLNEQYKSRNRELKLDIVDLD 1024
Query: 913 XXNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLLETII 972
NT+ C S Q+ D N+ + V+ + S L+ L + +I P LL++ +
Sbjct: 1025 IQNTN----HCSSDDQAMKD--DNVCITVTVVEASKHSVLE-LDAIRLVLI-PFLLDSPV 1076
Query: 973 KENWWVRQ 980
K + +++
Sbjct: 1077 KGDQGIKK 1084
Score = 197 (74.4 bits), Expect = 3.9e-87, Sum P(5) = 3.9e-87
Identities = 41/124 (33%), Positives = 70/124 (56%)
Query: 982 LSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPR 1041
L ++V+ K +L+EHL+L+A+S++ G+ V N+ G+ + + PFT+A P
Sbjct: 1167 LESAVSDTGKEILREHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPS 1226
Query: 1042 KCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLH 1101
+CF KAA++ D+L + A +WGK GTG +F+++ + F VDVYD L
Sbjct: 1227 QCFLKAAKEGVRDDLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTP--VDVYDLLS 1284
Query: 1102 MVRS 1105
++
Sbjct: 1285 STKT 1288
Score = 140 (54.3 bits), Expect = 3.9e-87, Sum P(5) = 3.9e-87
Identities = 38/120 (31%), Positives = 61/120 (50%)
Query: 1584 DVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFKV--DK 1641
++E + +S++RI+H Y + L+ D+ + V HP+ K+G G+ +V K
Sbjct: 1338 NIELLSQSLKRILHS--YEINELLNERDEGLV-KMVLQLHPNSVEKIGPGVKGIRVAKSK 1394
Query: 1642 HGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLVDEFIGKYFRRP--RSGGNRE 1699
HG DS C VV DG+ +DFSY KC+ + P ++ + KY + SGG E
Sbjct: 1395 HG---DSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGTLESGGFSE 1451
Score = 102 (41.0 bits), Expect = 3.9e-87, Sum P(5) = 3.9e-87
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 12 GQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPGKCEGH 71
G + I F ++ + S+ + + +Q+ + LGLP C +CG+ + CEGH
Sbjct: 13 GTLTSIGFSISNNNDRDKMSVLE--VEAPNQVTDSRLGLPNPDSVCRTCGSKDRKVCEGH 70
Query: 72 FGYIELPIPIYHPSHISEL 90
FG I I +P + E+
Sbjct: 71 FGVINFAYSIINPYFLKEV 89
Score = 39 (18.8 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 18/74 (24%), Positives = 31/74 (41%)
Query: 31 SISDCSISHASQLANPFLGLPLEFGKCESC-GTSEPGKCEGHFGYIELPIPIYHPSHISE 89
S+S C++S A+ A L P+ + +C G E + +Y ++S+
Sbjct: 879 SLSACALSEAAYSA---LDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLSK 935
Query: 90 LKLTMYAFQLQIKN 103
K L+IKN
Sbjct: 936 KKHGFEYGSLEIKN 949
>POMBASE|SPBC28F2.12 [details] [associations]
symbol:rpb1 "RNA polymerase II large subunit Rpb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IC] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IC] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
Length = 1752
Score = 423 (154.0 bits), Expect = 4.7e-54, Sum P(5) = 4.7e-54
Identities = 147/488 (30%), Positives = 225/488 (46%)
Query: 102 KNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDI 160
++D +RLLS EV + I E L + Y D I+ LPVPP + P I
Sbjct: 199 ESDLPEKRLLSPL-EVHTIFTHISSEDLAHLGLNEQYARPDWMIITVLPVPPPSVR-PSI 256
Query: 161 S-DGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVR 217
S DG S DL+ + + + R + G P E E LQ V Y+ E+
Sbjct: 257 SVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQL-LQFHVATYMDNEIA 315
Query: 218 GTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVN 273
G ++ + S P + +A L+ ++R + K FS+R+VITGD ++
Sbjct: 316 GQPQALQK-------SGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLD 368
Query: 274 EIGVPFEIAQRITFEERVNVHNINYLQELV----DNKLCLTY--SDGSSSYSLREGSK-G 326
E+GVP IA+ +T+ E V +NI LQELV D Y D LR + G
Sbjct: 369 ELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAG 428
Query: 327 HTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
LR G V R I DGD V NR P+ HK S+ + V T ++N + P +ADF
Sbjct: 429 DIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADF 488
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLD 445
DGD +++ PQS +AE+ E+ V KQ++S + + + D L + K + FL
Sbjct: 489 DGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLT 548
Query: 446 KAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLPPGFDSCGDR-------- 494
+ + ++ LP P + K + WT QIL ++P G + D
Sbjct: 549 RNAVMNIMLWVPDWDGILPPPVILKPK--VLWTGKQILSLIIPKGINLIRDDDKQSLSNP 606
Query: 495 ----YLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
LI+ E++ G D+ T+ + +V +I+ EKGPE FF+ +Q ++ L +
Sbjct: 607 TDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHN 666
Query: 551 GFSVSLED 558
GFS+ + D
Sbjct: 667 GFSIGIGD 674
Score = 179 (68.1 bits), Expect = 4.7e-54, Sum P(5) = 4.7e-54
Identities = 65/270 (24%), Positives = 121/270 (44%)
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI+ E++ G D+ T+ + +V +I+ EKGPE FF+ +Q ++ L +GFS+
Sbjct: 612 LIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIG 671
Query: 556 LEDFSLSKAALWNIQKEI--------QALYSLLYHRMS-----TQNELVDLQIE---NHI 599
+ D + + + + + + ++R+ T E + ++ N
Sbjct: 672 IGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQA 731
Query: 600 RHVKMLVAKFILK-SSTLGYLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFYSKTLVEDIA 658
R A+ LK S+ + ++ +G Q+ + GK
Sbjct: 732 RDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVE-GKRIPFGFKYRTL 790
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF P D + P ++ G I+ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 791 PHF----PKDDDSPESR-GFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 845
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
L+ + DV++ YDGTVRN + IIQF Y
Sbjct: 846 RLVKAMEDVMVRYDGTVRNAMGD-IIQFAY 874
Score = 107 (42.7 bits), Expect = 4.7e-54, Sum P(5) = 4.7e-54
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 17 IRFGLATQKEICTASISDC----SISHASQ------LANPFLG-LPLEFGKCESCGTSEP 65
++FG+ + +EI + S++ ++ + Q L +P LG + +F KC++CG +
Sbjct: 19 VQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDRQF-KCQTCGETM- 76
Query: 66 GKCEGHFGYIELPIPIYHPSHISELK 91
C GHFG+IEL P++H +S++K
Sbjct: 77 ADCPGHFGHIELAKPVFHIGFLSKIK 102
Score = 56 (24.8 bits), Expect = 4.7e-54, Sum P(5) = 4.7e-54
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
V AR ++ GE VG LAA ++ PA + L++
Sbjct: 1052 VEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNT 1086
Score = 56 (24.8 bits), Expect = 2.0e-41, Sum P(5) = 2.0e-41
Identities = 18/74 (24%), Positives = 35/74 (47%)
Query: 510 DTIPSVI----NEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS--LEDFSLSK 563
D +PS I NE++ + +G + + + LL + L F+V + ++ L+K
Sbjct: 983 DLLPSDIINGLNELIAKLTIFRGSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNK 1042
Query: 564 AALWNIQKEIQALY 577
A I E++A +
Sbjct: 1043 VAFEWIMGEVEARF 1056
Score = 52 (23.4 bits), Expect = 4.7e-54, Sum P(5) = 4.7e-54
Identities = 20/83 (24%), Positives = 31/83 (37%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
HL LL + MT G L+ G ++ F E + AA D+
Sbjct: 1373 HLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETV-----EILMDAAASGEKDDC 1427
Query: 1057 SSVVAACSWGKHVAVGTGSRFDL 1079
+ G+ +GTG+ FD+
Sbjct: 1428 KGISENIMLGQLAPMGTGA-FDI 1449
Score = 40 (19.1 bits), Expect = 8.1e-53, Sum P(5) = 8.1e-53
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 1603 DGDRLSADDKSFIFDNVF 1620
D DR + DD + I ++VF
Sbjct: 1248 DDDRKAEDDDNMIEEDVF 1265
>POMBASE|SPBC651.08c [details] [associations]
symbol:rpc1 "DNA-directed RNA polymerase III complex
large subunit Rpc1 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISO] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
PomBase:SPBC651.08c GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 KO:K03018 OrthoDB:EOG4X3M8C eggNOG:COG0086
GO:GO:0032549 HOGENOM:HOG000222974 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:DQ156227 PIR:T40607 RefSeq:NP_595506.1
ProteinModelPortal:O94666 STRING:O94666 EnsemblFungi:SPBC651.08c.1
GeneID:2541094 KEGG:spo:SPBC651.08c NextBio:20802207 Uniprot:O94666
Length = 1405
Score = 381 (139.2 bits), Expect = 1.2e-48, Sum P(6) = 1.2e-48
Identities = 109/364 (29%), Positives = 176/364 (48%)
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS-GTPNFESQ 199
+ + Y+P PP C+ P ++ +T DL++ + +++ +IR++ S GTP
Sbjct: 244 ENLLWRYVPAPPVCIR-PSVAQEGATTEDDLTVK-ITEIIWTSSLIRAALSKGTPISNLM 301
Query: 200 EVESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG 257
E + +QL++ Y+ E+ G S G Q K + R K
Sbjct: 302 E-QWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQ----RLKGKQGRFRGNLSGKRVD 356
Query: 258 FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCL----TYS- 312
FS R+VI+ D R++++ VP+ IA+ +TF ERV N +LQ+ + N + Y
Sbjct: 357 FSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVI 416
Query: 313 DGSSSYS--LREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHD 368
D S + LR G++ L+ G +V R + D D V NR P+ HK S+ A V V
Sbjct: 417 DRESGFKRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKVRP 476
Query: 369 DHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLA 428
T++ N +CGP +ADFDGD ++L PQ+ AK E LEL ++ L+S NG +
Sbjct: 477 WRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGEPIIAAT 536
Query: 429 TDALLSLKVM-FKKYFLDKAFTQQLAMFALSP-----LPRPALSKARCSARWTALQILQS 482
D + + ++ K FLD+ + + + LP PA+ K RC WT Q+
Sbjct: 537 QDFITAAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAIIKPRCL--WTGKQVFTV 594
Query: 483 VLPP 486
++ P
Sbjct: 595 LMKP 598
Score = 135 (52.6 bits), Expect = 1.2e-48, Sum P(6) = 1.2e-48
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC 730
+P AK G + F+ GL P E + H+IS RE +V ++ +E G + + LM L D+
Sbjct: 821 HPLAK-GFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSA 879
Query: 731 YDGTVRNVCSNS-IIQFDY 748
YDGTVR+ SNS ++QF Y
Sbjct: 880 YDGTVRS--SNSDVVQFVY 896
Score = 90 (36.7 bits), Expect = 1.2e-48, Sum P(6) = 1.2e-48
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
C +CG S C GHFGY++L +P++H I K T+ Q I D +L S E
Sbjct: 66 CATCGESM-ADCMGHFGYVKLALPVFH---IGYFKATLTILQ-NICKD--CSSVLLSDQE 118
Query: 117 VKEMLK 122
++ LK
Sbjct: 119 KRQFLK 124
Score = 90 (36.7 bits), Expect = 1.2e-48, Sum P(6) = 1.2e-48
Identities = 29/103 (28%), Positives = 48/103 (46%)
Query: 987 TMVAKGVLKE--HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCF 1044
TM G+ + H++LL + MTC G+++G G + S+ F + T + F
Sbjct: 1288 TMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFEKTTDHL----F 1343
Query: 1045 EKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEE 1087
AA + D++ + GK +GT F L+ +TE EE
Sbjct: 1344 NAAA-RFAKDSIEGISECIVLGKLAPIGTNV-FQLIRRTEEEE 1384
Score = 66 (28.3 bits), Expect = 1.2e-48, Sum P(6) = 1.2e-48
Identities = 24/83 (28%), Positives = 37/83 (44%)
Query: 493 DRYL-IKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFAD 550
D YL I+ SE++ G D+ + + + I + G E E L + L
Sbjct: 629 DGYLMIRNSEIIAGVVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNR 688
Query: 551 GFSVSLEDFSLSKAALWNIQKEI 573
GFS+ +ED K+ + QKEI
Sbjct: 689 GFSIGIEDVQPGKSL--SSQKEI 709
Score = 43 (20.2 bits), Expect = 3.5e-11, Sum P(5) = 3.5e-11
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 132 LAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRS 191
L K Y D +I++Y C P + D +T+ + +S + L KV V I
Sbjct: 710 LVNKAYATSDDFIMQYAKGILECQ--PGM-DQEATLEAKIS-STLSKVRDDVGEICMDEL 765
Query: 192 GTPN 195
G N
Sbjct: 766 GPAN 769
Score = 42 (19.8 bits), Expect = 1.2e-48, Sum P(6) = 1.2e-48
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 830 ERAAYMVKNQLKRVSLKD 847
ER+A +VK ++++ LKD
Sbjct: 1108 ERSARVVKGRIEKTYLKD 1125
Score = 38 (18.4 bits), Expect = 1.5e-43, Sum P(5) = 1.5e-43
Identities = 15/52 (28%), Positives = 18/52 (34%)
Query: 1436 DSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQ 1487
D P A KS V I + D CW K + GT + G Q
Sbjct: 1003 DEFAPVAKRKS-VENIIRVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQ 1053
>SGD|S000002299 [details] [associations]
symbol:RPO21 "RNA polymerase II largest subunit B220"
species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
Length = 1733
Score = 365 (133.5 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 136/477 (28%), Positives = 218/477 (45%)
Query: 109 RLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGY-ILEYLPVPPNCLSVPDISDGVSTM 167
R+LS+ E+ + K I + L F + + IL LPVPP + P IS S
Sbjct: 200 RVLSTE-EILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVR-PSISFNESQR 257
Query: 168 SSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDV 226
D L +LK + + +G P+ +E ES LQ V Y++ A + +
Sbjct: 258 GEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMD-NDIAGQPQAL 315
Query: 227 DARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
+ + K ++R + K FS+R+VI+GD ++++GVP IA+ +T
Sbjct: 316 QKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLT 375
Query: 287 FEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRR 339
+ E V +NI+ L +LV N D LR + G L+ G V R
Sbjct: 376 YPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERH 435
Query: 340 IMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSL 399
IMD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L PQS
Sbjct: 436 IMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 495
Query: 400 AAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFALS 458
+AE+ +L +V Q++S + + + D L + K+ + F++ Q L M
Sbjct: 496 ETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIE--LDQVLNMLYWV 553
Query: 459 P-----LPRPALSKARCSARWTALQILQSVLPPG-----FD------SCGDR-YLIKKSE 501
P +P PA+ K + W+ QIL +P G FD S D LI +
Sbjct: 554 PDWDGVIPTPAIIKPK--PLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQ 611
Query: 502 VLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
++ G ++ T+ S ++ + EKGP+ + F ++Q ++ L +GFS + D
Sbjct: 612 IIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD 668
Score = 166 (63.5 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 63/270 (23%), Positives = 118/270 (43%)
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPL----LMENLFADG 551
LI +++ G ++ T+ S ++ + EKGP+ + F ++Q + L+ N F+ G
Sbjct: 606 LIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTG 665
Query: 552 FSVSLED----------FSLSKAALWNIQKEIQALYSLLYHRMSTQNELVD--LQIENHI 599
++ D + +K + ++ KE QA H M+ + D ++ N
Sbjct: 666 IGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEA 725
Query: 600 RHVKMLVAKFILKS-STLGYLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFYSKTLVEDIA 658
R +A+ LK + + ++ +G Q S GK + V+
Sbjct: 726 RDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQ-SVEGKRIAFGFVDRTL 784
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + D P +K G ++ + GL P E H++ RE ++ ++ +E G + +
Sbjct: 785 PHFSK----DDYSPESK-GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 839
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
L+ L D+++ YD T RN N +IQF Y
Sbjct: 840 RLVKALEDIMVHYDNTTRNSLGN-VIQFIY 868
Score = 87 (35.7 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 43 LANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
L +P LG KC++C +C GHFG+I+L P++H I+++K
Sbjct: 53 LNDPRLGSIDRNLKCQTCQEGM-NECPGHFGHIDLAKPVFHVGFIAKIK 100
Score = 71 (30.1 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 39/150 (26%), Positives = 71/150 (47%)
Query: 746 FDYA---VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS-------SPSSNNSWELM 795
FD+ + A+ S+ GE VGVLAA ++ PA + L++ S + +
Sbjct: 1042 FDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRL 1101
Query: 796 KEILLCRVSFN-NDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLI 854
KEIL V+ N P + +YL G QE+A ++++ ++ +LK + I
Sbjct: 1102 KEIL--NVAKNMKTP---SLTVYLEP---GHAADQEQAK-LIRSAIEHTTLKSVTIASEI 1152
Query: 855 EYK---KPEIISDDEGLVGHIHLNKILLED 881
Y + +I +DE ++ +H + LL++
Sbjct: 1153 YYDPDPRSTVIPEDEEII-QLHFS--LLDE 1179
>DICTYBASE|DDB_G0279193 [details] [associations]
symbol:rpb1 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
Uniprot:P35084
Length = 1727
Score = 361 (132.1 bits), Expect = 7.0e-42, Sum P(6) = 7.0e-42
Identities = 118/414 (28%), Positives = 197/414 (47%)
Query: 89 ELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQDGYILEY 147
+LK+ + F+ + ++ + ++ + S V +LKRI +E + + + D I
Sbjct: 186 DLKIIV-EFK-DVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINPDWARADWMIATV 243
Query: 148 LPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDL 206
LPVPP + P I ST D L ++K E+ R ++G P E + L
Sbjct: 244 LPVPPPPVR-PSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHIIAEA-TQFL 301
Query: 207 QLAVGQYL--EVRGTAKSSRDVDARFGVS-QDPNSTTKAWLEKMRTLFIRKGSGFSSRSV 263
Q V Y+ E+ G ++ + R G + K ++R + K FS+R+V
Sbjct: 302 QFHVATYVDNEIPGLPQAQQ----RSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTV 357
Query: 264 ITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSS 316
IT D ++++GVP IA +T+ E V NI+ ++EL+ N + DG+
Sbjct: 358 ITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPGAKYIIREDGTR 417
Query: 317 SYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKIN 375
+ LR K T L G V R I DGD V NR P+ HK S+ + V T ++N
Sbjct: 418 -FDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLN 476
Query: 376 PLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL 435
+ P +ADFDGD ++L PQ+L +AEV+E+ V +Q++S + + + D LL
Sbjct: 477 LSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGS 536
Query: 436 KVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLP 485
++ K+ F++K + M+ S +P PA+ K + WT Q+ ++P
Sbjct: 537 RLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPK--QLWTGKQLFSLIIP 588
Score = 141 (54.7 bits), Expect = 7.0e-42, Sum P(6) = 7.0e-42
Identities = 68/285 (23%), Positives = 117/285 (41%)
Query: 486 PGFDSCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLM 544
P S GD R +I++ E+L G + ++ + I+ + E G + F D Q ++
Sbjct: 604 PNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVN 663
Query: 545 ENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRM-STQNELVDLQ-----IENH 598
L GF++ + D A + + I + + + + QN+ + Q IE
Sbjct: 664 HWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKSVIETF 723
Query: 599 IRHVKMLV--AKFILKSSTLGYLIXXXXXXXXXXXXXXXGFLGL--------QLSDRGK- 647
+ V ++ A+ SS L F+ + Q + GK
Sbjct: 724 EQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVEGKR 783
Query: 648 ----FYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVI 703
F S+TL HF + D +Y G ++ + GL P E H++ RE +
Sbjct: 784 IPFGFQSRTL-----PHFTK----D-DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 833
Query: 704 VRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
+ ++ SE G + + L+ + DV I YD TVRN + +IQF Y
Sbjct: 834 IDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGD-VIQFAY 877
Score = 90 (36.7 bits), Expect = 7.0e-42, Sum P(6) = 7.0e-42
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 17 IRFGLATQKEICTASISDCSISH----------ASQLANPFLGLPLEFGKCESC-GTSEP 65
++FG+ + EI S++ + H A L +P +G + +C++C GT
Sbjct: 18 VQFGILSPDEIRNMSVA--RVEHPETYENGKPKAGGLLDPAMGTIDKTQRCQTCSGTM-- 73
Query: 66 GKCEGHFGYIELPIPIYHPSHISE-LKL 92
+C GHFG+IEL P++H I LK+
Sbjct: 74 AECPGHFGHIELAKPVFHIGFIDTVLKI 101
Score = 59 (25.8 bits), Expect = 7.0e-42, Sum P(6) = 7.0e-42
Identities = 24/96 (25%), Positives = 38/96 (39%)
Query: 980 QRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFM 1039
+ L A ++ V HL +LA+ MT G L+ G + ++ F E
Sbjct: 1368 KELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETV--- 1424
Query: 1040 PRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGS 1075
+ AA TD++ V G+ +GTGS
Sbjct: 1425 --EILMDAAMFSETDDVKGVTENIILGQLPPLGTGS 1458
Score = 53 (23.7 bits), Expect = 7.0e-42, Sum P(6) = 7.0e-42
Identities = 40/152 (26%), Positives = 64/152 (42%)
Query: 750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS----SPSSNN---SWELMKEILLCR 802
+ ++ +L GE VG LAA ++ PA + L++ SS N +KEI+
Sbjct: 1068 IESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIA 1127
Query: 803 VSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKK-PE- 860
+ +YL R +RA +VK+QL+ +L + I Y P+
Sbjct: 1128 KQVKTPSLT----IYLKP-HMARD--MDRAK-IVKSQLEYTTLANVTSATEIYYDPDPQN 1179
Query: 861 -IISDDEGLVGHIHLNKILLEDLRISMHDILP 891
IIS+D V + L D I +H + P
Sbjct: 1180 TIISEDAEFVN----SYFELPDEEIDVHSMSP 1207
Score = 42 (19.8 bits), Expect = 7.0e-42, Sum P(6) = 7.0e-42
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 1265 SPAAKTSSGWGSEASWGKS 1283
SP+A S G+ + S+G S
Sbjct: 1525 SPSAMNSPGYNANKSYGSS 1543
>FB|FBgn0030687 [details] [associations]
symbol:CG17209 species:7227 "Drosophila melanogaster"
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
GO:GO:0032549 GeneTree:ENSGT00700000104490 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:NP_001096987.2 UniGene:Dm.14839
ProteinModelPortal:A8JUY3 SMR:A8JUY3 STRING:A8JUY3
EnsemblMetazoa:FBtr0300811 GeneID:32524 KEGG:dme:Dmel_CG17209
FlyBase:FBgn0030687 OrthoDB:EOG4BNZSM PhylomeDB:A8JUY3
GenomeRNAi:32524 NextBio:778916 Bgee:A8JUY3 Uniprot:A8JUY3
Length = 1383
Score = 332 (121.9 bits), Expect = 2.3e-41, Sum P(4) = 2.3e-41
Identities = 135/472 (28%), Positives = 208/472 (44%)
Query: 56 KCESCGTSEPGKCEG-------HFGYIELPIPIYHPSHISE-LKLTMYAFQLQ--IKNDG 105
KC CG+ G +G H Y + S+++E L+ T L + N
Sbjct: 153 KCPHCGSPNGGVKKGPGLLKILHDPYKGRKMDSLFTSNMNEMLRSTQTNRDLNSTLGNYS 212
Query: 106 VAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQDGY----ILEYLPVPPNCLSVPDIS 161
A+ L V ++ ++IP+ + +A G D + I+ + VPP C+ +S
Sbjct: 213 TAEELTPLM--VLDLFEQIPQ---RDVALLGMCSHDAHPKHLIVTRVFVPPACIRPSVLS 267
Query: 162 D-GVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYL--EVRG 218
+ T DL++ ++L ++I+ + E + + LQL V Y E+ G
Sbjct: 268 EVKAGTTEDDLTMKQ-SEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISG 326
Query: 219 TAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVP 278
+ G+ Q K + R K FS R+VI+ D +N++GVP
Sbjct: 327 IPINMAPKKTTRGIVQ----RLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGVP 382
Query: 279 FEIAQRITFEERVNVHNINYLQELVDNKLCL----TYSD--GSS-----SYSLREGSKGH 327
+A+ +T+ ERVN NI +++ELV N + Y GSS +Y RE K
Sbjct: 383 VRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNRE--KVA 440
Query: 328 TFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 387
L+ G VV R + DGD V NR P+ HK S+ V T + N C P +ADFD
Sbjct: 441 QELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFD 500
Query: 388 GDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDK 446
GD ++L PQ+ A+AE L L + L++ NG + + D + ++ +K FL K
Sbjct: 501 GDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTK 560
Query: 447 AFTQQLAMFALS--------PLPRPALSKARCSARWTALQILQSVLPPGFDS 490
QLA L+ LP PAL K R WT Q+ ++ P DS
Sbjct: 561 EEAMQLAACFLANEDSTMHIKLPPPALLKPR--RLWTGKQMFSLLMRPNDDS 610
Score = 131 (51.2 bits), Expect = 2.3e-41, Sum P(4) = 2.3e-41
Identities = 35/109 (32%), Positives = 58/109 (53%)
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HFER + P A+ G ++ F+ GL P E H+++ RE +V ++ +E G L +
Sbjct: 818 HFERHSAI----PAAR-GFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRR 872
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVL 768
L+ L D+V+ YDGTVRN N ++ Y + S+ +PV ++
Sbjct: 873 LVKCLEDLVVHYDGTVRNAV-NEMVDTIYGGDGLDPVSMETRNKPVDLV 920
Score = 103 (41.3 bits), Expect = 2.3e-41, Sum P(4) = 2.3e-41
Identities = 25/94 (26%), Positives = 47/94 (50%)
Query: 2 EENTSSTILEGQIVGIRFGLATQKEI---CTASISDCSISHASQLANPF------LGLPL 52
+E ++ L +I ++FG++ EI I ++ A + P+ +G+
Sbjct: 3 KEQFRASALNKKISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGIST 62
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSH 86
+ CE+CG +C GHFGY++L +P++H H
Sbjct: 63 KDAMCETCGQGL-NECIGHFGYLDLALPVFHIGH 95
Score = 78 (32.5 bits), Expect = 2.3e-41, Sum P(4) = 2.3e-41
Identities = 31/113 (27%), Positives = 52/113 (46%)
Query: 979 RQRLSASVTMVAKG----VLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTE 1034
R + + +T V +G V H++LLA+ MT G+++G G + S+ F +
Sbjct: 1257 RTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEK 1316
Query: 1035 ATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEE 1087
+ F+ AA TD ++ V G +GTG F LL Q E+++
Sbjct: 1317 TADHL----FD-AAYYGQTDAINGVSERIILGMPACIGTGI-FKLLQQHEDKQ 1363
Score = 55 (24.4 bits), Expect = 2.4e-33, Sum P(5) = 2.4e-33
Identities = 12/54 (22%), Positives = 27/54 (50%)
Query: 729 ICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVL 782
+C+ + + + ++QF +N R + ++ G VG +AA ++ P + L
Sbjct: 991 LCHQ--IECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTL 1042
Score = 44 (20.5 bits), Expect = 2.4e-33, Sum P(5) = 2.4e-33
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 494 RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEV 532
R L+K E L +D T+ + +NE+V +I+ G + V
Sbjct: 871 RRLVKCLEDLVVHYD-GTVRNAVNEMVDTIYGGDGLDPV 908
Score = 42 (19.8 bits), Expect = 1.2e-37, Sum P(4) = 1.2e-37
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 1653 VVSTDGSQQDFSYRKCLESF 1672
V++ D ++Q +Y+ C+E +
Sbjct: 1204 VIAVDDARQPPTYKLCIEGY 1223
Score = 42 (19.8 bits), Expect = 5.0e-32, Sum P(5) = 5.0e-32
Identities = 14/66 (21%), Positives = 29/66 (43%)
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIEN-H----IRHVKML 605
G ++L+ F + A NI + + + ++ + ++ ++EN H R VK
Sbjct: 1037 GTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKAR 1096
Query: 606 VAKFIL 611
+ K L
Sbjct: 1097 IEKTTL 1102
Score = 39 (18.8 bits), Expect = 6.8e-32, Sum P(4) = 6.8e-32
Identities = 16/81 (19%), Positives = 24/81 (29%)
Query: 854 IEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDILPKCQETLXXXXXXXXXXXXXXXX 913
IE K + G L ++L +L C L
Sbjct: 726 IELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSKG 785
Query: 914 XNTSLSISECCSFQQSCADKR 934
N ++S C QQ+ + KR
Sbjct: 786 SNINISQMIACVGQQAISGKR 806
>ASPGD|ASPL0000054301 [details] [associations]
symbol:AN0809 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 EMBL:BN001308 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACD01000013 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
RefSeq:XP_658413.1 STRING:Q5BF71 EnsemblFungi:CADANIAT00001852
GeneID:2876587 KEGG:ani:AN0809.2 Uniprot:Q5BF71
Length = 1745
Score = 355 (130.0 bits), Expect = 4.5e-40, Sum P(4) = 4.5e-40
Identities = 116/382 (30%), Positives = 177/382 (46%)
Query: 126 EETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSS----DLSIAMLKKVLK 181
E+ R Y + IL LPVPP + P + G ST DL+ + + V
Sbjct: 228 EDVRIMGLSNDYARPEWMILTVLPVPPPPVR-PSVVVGGSTSGQRGEDDLTYKLAEIVRA 286
Query: 182 QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLE--VRGTAKSSRDVDARFGVSQDPNST 239
+ R + G P +E ES LQ + Y++ + G K+ + + + S
Sbjct: 287 NQNVQRCEQEGAPEHVVREFESL-LQYHIATYMDNDIAGQPKAMQKSNRPVKAIR---SR 342
Query: 240 TKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
K ++R + K FS+R+VITGD ++E+GVP IA+ +T+ E V +NI L
Sbjct: 343 LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKL 402
Query: 300 QELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPP 352
Q+LV N D LR + G L G V R +MDGD + NR P
Sbjct: 403 QQLVMNGPNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHLMDGDVILFNRQP 462
Query: 353 TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVE 412
+ HK S+ V V T ++N + P +ADFDGD ++L PQS ++AE+ +L V
Sbjct: 463 SLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEESRAELQQLALVP 522
Query: 413 KQLLS-SHNGNLNLQLATDALLSL-KVMFKKYFLDKAFTQQLAMFALS---PLPRPALSK 467
+ ++S NG L + + D L + K+ + FL K + M+ +P PA+ K
Sbjct: 523 QNIVSPQRNGPL-MGIVQDTLCGIYKICRRDVFLTKEQVMNIMMWVPDWDGVIPPPAIFK 581
Query: 468 ARCSARWTALQILQSVLPPGFD 489
R RWT Q++ V P G +
Sbjct: 582 PR--PRWTGKQMISMVFPSGLN 601
Score = 145 (56.1 bits), Expect = 4.5e-40, Sum P(4) = 4.5e-40
Identities = 63/265 (23%), Positives = 116/265 (43%)
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI + +++ G ++ + + ++ IF E G + + FF+ Q ++ L +GFS+
Sbjct: 626 LIHEGQLMYGMLNKKIVGASGGGVIHIIFNEYGADAAVAFFNGAQAIVNYWLLHNGFSIG 685
Query: 556 LEDFSLSKAALWNIQKEIQA--LYSLLYHRMSTQNELVDLQIENHIRHV---KMLVAKFI 610
+ D + + I++ ++ L +TQN+L L N +R K+ VA
Sbjct: 686 IGDTIPNDQTIQAIEECVRKRKLEVEEITATATQNKLEPLPGMN-VRETFESKVSVALNT 744
Query: 611 LKSSTLGYLIXXXXXXXXXXXXXXXGFLG--LQLSDRGKFYSKTLVED--IASHFE-RIY 665
+ G G + +S + +VE IA F+ R
Sbjct: 745 ARDEAGTATEKSLKDLNNAVQMSRSGSKGSIINISQMTAVVGQQMVEGKRIAFGFKYRTL 804
Query: 666 PMDL--NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
P +Y G ++ + GL P E H+++ RE ++ ++ +E G + + L+
Sbjct: 805 PHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKA 864
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDY 748
L +V++ YDGTVRN + IIQF Y
Sbjct: 865 LEEVMVKYDGTVRNSLGD-IIQFIY 888
Score = 93 (37.8 bits), Expect = 4.5e-40, Sum P(4) = 4.5e-40
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 43 LANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
L +P LG CE+C + +C GHFG+IEL P++H ++++K
Sbjct: 55 LNDPRLGTIDRQWNCETCEEGQK-ECPGHFGHIELATPVFHIGFLTKIK 102
Score = 63 (27.2 bits), Expect = 1.2e-31, Sum P(4) = 1.2e-31
Identities = 34/108 (31%), Positives = 50/108 (46%)
Query: 687 LDPYEEM--THSISTREVIVRS----SRGLSEPGT-LFKNLMAVLRDVVICYDGTVRNVC 739
L P E + S+ R VIVR S+ E T LFK A LR + + V
Sbjct: 1001 LHPAEVIPQVQSLLDRLVIVRGDDPISKEAQESATMLFK---AQLRSR-LAFKRLVTQYS 1056
Query: 740 SNSIIQFDY---AVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
N + F + A+ +R + + GE VGVLAA ++ PA + L++
Sbjct: 1057 MNKLA-FQHVLGAIESRFAKAAAAPGEMVGVLAAQSIGEPATQMTLNT 1103
Score = 48 (22.0 bits), Expect = 4.3e-30, Sum P(4) = 4.3e-30
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 645 RGKFYSKTL-VEDIASHFERIYPMDL 669
R K K L V+D+A+ ++ YP D+
Sbjct: 1218 RAKLLDKGLTVQDVATKIKQAYPRDI 1243
Score = 43 (20.2 bits), Expect = 4.5e-40, Sum P(4) = 4.5e-40
Identities = 21/83 (25%), Positives = 29/83 (34%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
HL LL + MT G L G ++ F E + +AA D+
Sbjct: 1393 HLALLVDVMTMRGYLTPVTRHGINRADNGALMRCSFEETV-----EILLEAAAFGELDDC 1447
Query: 1057 SSVVAACSWGKHVAVGTGSRFDL 1079
V G+ GTG FD+
Sbjct: 1448 RGVSENLILGQMAPAGTGE-FDI 1469
>UNIPROTKB|G4MT89 [details] [associations]
symbol:MGG_04652 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0043581 EMBL:CM001232 GO:GO:0003899
GO:GO:0005665 KO:K03006 RefSeq:XP_003713642.1
EnsemblFungi:MGG_04652T0 GeneID:2678092 KEGG:mgr:MGG_04652
Uniprot:G4MT89
Length = 1757
Score = 418 (152.2 bits), Expect = 2.8e-39, Sum P(5) = 2.8e-39
Identities = 146/520 (28%), Positives = 237/520 (45%)
Query: 83 HPSHISELKLTMYAFQLQIKNDGVAQRLLSSCC---EVKEMLKRIPEETRKKLA-GKGYF 138
HP I + L +YA + + +G+ + + + +LK IPE+ K+ K Y
Sbjct: 182 HPD-IRKKALQLYAKVEEAREEGMKKEVKDKLITPEQAHHILKHIPEDDLWKMGLNKDYA 240
Query: 139 PQDGYILEYLPVPPNCLSVPDIS-DGVST-MSS--DLSIAMLKKVLKQVEIIRSSRSGTP 194
+ I+ LPVPP + P IS DG S M S DL+ + + + ++ G P
Sbjct: 241 RPEWLIVTVLPVPPPPVR-PSISVDGTSQGMRSEDDLTYKLGDIIRANGNVKQAHAEGAP 299
Query: 195 NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRK 254
N E E LQ V Y++ A R + + + K ++R + K
Sbjct: 300 NHICTEFEEL-LQYHVATYMD-NDIASIPRSLQKSGRPIKSIRARLKGKEGRLRGNLMGK 357
Query: 255 GSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KL 307
FS+R+VITGDA ++E+GVP IA+ +T+ E V HNI+ L + V N
Sbjct: 358 RVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEHPGAK 417
Query: 308 CLTYSDGSSSYSLRE-GSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV 366
+ +DG+ LR ++G T L GQ V R ++ GD + NR P+ HK S+ V V
Sbjct: 418 YIVRTDGTR-IDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKESMMGHQVRV 476
Query: 367 HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQ 426
T ++N + P +ADFDGD ++L PQ+ +AEV EL V ++S + +
Sbjct: 477 MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNSPLMG 536
Query: 427 LATDALL-SLKVMFKKYFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQS 482
+ D L + K+ + FL K + ++ +P+PA+ + R RWT QI+
Sbjct: 537 IVQDTLAGTYKLCRRDVFLTKEAVMDIMLWVPDWDGIIPQPAILRPR--PRWTGKQIISM 594
Query: 483 VLPP------GFD---SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVL 533
V+P G D D LI+ E++ G + + + I+ + E+GP +
Sbjct: 595 VIPDFVTTHQGGDWNPLNDDALLIQSGELMFGLLTKKNVGAASGGIIHICYNEQGPARAM 654
Query: 534 EFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEI 573
F + Q ++ L +G S+ + D + IQ I
Sbjct: 655 AFLNGCQRVVNYWLLHNGHSIGIGDTIPDPVTIEKIQAHI 694
Score = 138 (53.6 bits), Expect = 5.5e-10, Sum P(5) = 5.5e-10
Identities = 63/268 (23%), Positives = 109/268 (40%)
Query: 493 DRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGF 552
D LI+ E++ G + + + I+ + E+GP + F + Q ++ L +G
Sbjct: 614 DALLIQSGELMFGLLTKKNVGAASGGIIHICYNEQGPARAMAFLNGCQRVVNYWLLHNGH 673
Query: 553 SVSLEDFSLSKAALWNIQKEIQALYSLLYHR--MSTQNELVDLQIENHIRHVKMLVAKFI 610
S+ + D + IQ I + + ++T N L L N + V+K +
Sbjct: 674 SIGIGDTIPDPVTIEKIQAHINEQKAEVAELTDLATTNRLEALPGMNIRETFESKVSKAL 733
Query: 611 L----KSSTLGYLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFYSKTLVED--IASHFE-R 663
K+ T + +S + +VE I F+ R
Sbjct: 734 NTAREKAGTTTEKSLKDINNAVTMSRSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 793
Query: 664 IYP---MDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNL 720
P D P A+ G ++ + GL P E H+++ RE ++ ++ +E G + + L
Sbjct: 794 TLPHFTKDDFSPEAR-GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRL 852
Query: 721 MAVLRDVVICYDGTVRNVCSNSIIQFDY 748
+ L DV YDGTVRN + IIQF Y
Sbjct: 853 VKALEDVAAKYDGTVRNSLGD-IIQFIY 879
Score = 111 (44.1 bits), Expect = 2.8e-39, Sum P(5) = 2.8e-39
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 43 LANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELK 91
L +P LG KC++C ++ C GHFG+IEL P+YHP I++ K
Sbjct: 55 LNDPLLGTTDRQYKCKTCN-NDMNNCPGHFGHIELAKPVYHPGFINKTK 102
Score = 62 (26.9 bits), Expect = 2.8e-39, Sum P(5) = 2.8e-39
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 744 IQFDYAVNARKSH---SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
I FD+ + +S S GE VGVLAA ++ PA + L++
Sbjct: 1053 IAFDHVIGEMESRWQRSFVSPGEMVGVLAAQSIGEPATQMTLNT 1096
Score = 48 (22.0 bits), Expect = 7.6e-38, Sum P(5) = 7.6e-38
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 640 LQLS-DRGKFYSKTL-VEDIASHFERIYPMDL 669
L+L+ DR K K L +ED+A+ + Y DL
Sbjct: 1207 LRLTLDRQKMLDKNLHIEDVAASIKGAYASDL 1238
Score = 44 (20.5 bits), Expect = 2.8e-39, Sum P(5) = 2.8e-39
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 956 SGVLANMIYPVLLETIIKENWWVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFN 1015
+G ++ P +LET++ N R L +T+ KG E ++ + GD G+N
Sbjct: 1460 TGAFEVLLDPKMLETVVSNN--ARMGLMPGLTV--KGSSAEGAATPYDTGSPMGDS-GYN 1514
Query: 1016 SG 1017
G
Sbjct: 1515 LG 1516
Score = 44 (20.5 bits), Expect = 2.8e-39, Sum P(5) = 2.8e-39
Identities = 19/84 (22%), Positives = 32/84 (38%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
HL LL + MT G + G ++ F E + +AA D+
Sbjct: 1389 HLALLVDVMTYRGSIAAVTRHGINRADTGALMRCSFEETV-----EILLEAAAIGELDDC 1443
Query: 1057 SSVVAACSWGKHVAVGTGSRFDLL 1080
+ G+ +GTG+ F++L
Sbjct: 1444 RGISENVMLGQLAPMGTGA-FEVL 1466
Score = 41 (19.5 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1222 EASWGESSCDKWENVGSPAAKSFSEWGTE 1250
E+ W S E VG AA+S E T+
Sbjct: 1063 ESRWQRSFVSPGEMVGVLAAQSIGEPATQ 1091
Score = 38 (18.4 bits), Expect = 2.8e-39, Sum P(5) = 2.8e-39
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 1261 PENVSPAAKTSSGWGSEASWGKSSG 1285
P + SP + S+G+GS + +G
Sbjct: 1565 PFSTSPTSPFSAGYGSYSPTSPMAG 1589
>ASPGD|ASPL0000047704 [details] [associations]
symbol:AN10316 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EnsemblFungi:CADANIAT00009238 Uniprot:C8VPJ2
Length = 1445
Score = 334 (122.6 bits), Expect = 6.1e-39, Sum P(5) = 6.1e-39
Identities = 119/427 (27%), Positives = 193/427 (45%)
Query: 117 VKEMLKRIPEETRKKLAGKGYFPQDG----YILEYLPVPPNCLSVPDISDGVSTMSSDLS 172
V + KRI + + L G P++ ++ +++P PP C+ P + S+ DL+
Sbjct: 240 VLNLFKRISDSDCELL---GLDPKEARPEMFLWQFIPAPPVCIR-PSVGQDASSTEDDLT 295
Query: 173 IAMLKKVLKQVEIIRSSRSGTPNFESQEV-ESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ V + + + G P E + LQ+AV +V G K+ R G
Sbjct: 296 AKLGDIVQSNINLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIR-G 354
Query: 232 VSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERV 291
Q K + R K FS R+VI+ D RV+E+ VP +A+ +T+ E V
Sbjct: 355 FVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVV 410
Query: 292 NVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLR------------PGQVVHRR 339
N +N LQ+ V N ++Y +++G+ T L+ G +V R
Sbjct: 411 NRYNKEKLQQCVRNG---QKKWPGANYIIKKGNPLKTMLKYGNLKFIADQLQEGDIVERH 467
Query: 340 IMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSL 399
I DGD V NR P+ HK S+ + V T ++N +C P +ADFDGD ++L PQ+
Sbjct: 468 IEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTE 527
Query: 400 AAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS 458
A+AE +EL V+ L + NG + D + + ++ K F D+ Q+ ++ L
Sbjct: 528 EARAEAMELMGVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFDRRSFTQICLYMLG 587
Query: 459 P-----LPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLI------KKSEVLKGDF 507
P LP PA+ K + WT Q+ ++ P D D L+ K+ + KG+
Sbjct: 588 PQTRFDLPPPAVFKPQML--WTGKQVFNILMRPNKD---DPVLVNLDAACKQFKPPKGNQ 642
Query: 508 DRDTIPS 514
RD P+
Sbjct: 643 PRDLDPN 649
Score = 152 (58.6 bits), Expect = 6.1e-39, Sum P(5) = 6.1e-39
Identities = 70/276 (25%), Positives = 117/276 (42%)
Query: 493 DRYLI-KKSEVLKGDFDRDTIPSVINEIVTSIFFEK-GPEEVLEFFDSLQPLLMENLFAD 550
D +L+ + SEV+ G D+ T+ S + V I GP E + L L
Sbjct: 650 DSWLVVRNSEVMCGVMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFSNM 709
Query: 551 GFSVSLEDFSLSKAALWNIQKEIQALYS-----LLYHRMSTQNELV---DLQ-IENHIRH 601
GFS+ + D S + + ++A Y+ + ++ T + +LQ +EN +
Sbjct: 710 GFSIGITDVYPSDRLVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSG 769
Query: 602 V--KM-------LVAKFILKSSTLGYLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFYSKT 652
+ K+ +A+ +S L + +G Q+ G+
Sbjct: 770 ILSKVRQQAGDECIAQLSKYNSPL-IMATSGSKGSSINVSQMVALVGQQIIG-GQRVQDG 827
Query: 653 LVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSE 712
+ HF P + P +K G ++ FF GL PYE + H++S RE +V ++ +E
Sbjct: 828 FQDRTLPHF----PKNARQPPSK-GFVRNSFFSGLLPYEFIFHAMSGREGLVDTAVKTAE 882
Query: 713 PGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
G + + LM L D+ YD TVRN S I+QF Y
Sbjct: 883 TGYMSRRLMKSLEDLSTGYDDTVRN-SSQGIVQFQY 917
Score = 77 (32.2 bits), Expect = 6.1e-39, Sum P(5) = 6.1e-39
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 48 LGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISEL 90
+G+ + C++CG + C GHFG++ L +P +H + +
Sbjct: 69 MGISNKTSTCQTCGGALQ-VCNGHFGHVRLVLPAFHVGYFKRV 110
Score = 68 (29.0 bits), Expect = 6.1e-39, Sum P(5) = 6.1e-39
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
H+ LLA+ MT G+++G G + S+ +Q+ E T F+ R TD +
Sbjct: 1333 HMQLLADVMTYKGEVLGITRFGLAKMRDSV-LQLASFEKTA---DHLFDAGGAGR-TDLI 1387
Query: 1057 SSVVAACSWGKHVAVGTGS 1075
V GK V++GTG+
Sbjct: 1388 EGVSECIIMGKTVSLGTGA 1406
Score = 37 (18.1 bits), Expect = 6.1e-39, Sum P(5) = 6.1e-39
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 806 NNDPIDRRVILYLNDCG 822
++DP D R I LN G
Sbjct: 1025 DSDPSDERTIKGLNHTG 1041
>WB|WBGene00004411 [details] [associations]
symbol:rpc-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0040035 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 eggNOG:COG0086
HSSP:P04050 GO:GO:0032549 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:FO080771 PIR:T34157 RefSeq:NP_501127.2
ProteinModelPortal:Q18566 SMR:Q18566 STRING:Q18566 PaxDb:Q18566
EnsemblMetazoa:C42D4.8 GeneID:177491 KEGG:cel:CELE_C42D4.8
UCSC:C42D4.8 CTD:177491 WormBase:C42D4.8 InParanoid:Q18566
NextBio:897062 Uniprot:Q18566
Length = 1400
Score = 324 (119.1 bits), Expect = 1.3e-38, Sum P(4) = 1.3e-38
Identities = 130/506 (25%), Positives = 220/506 (43%)
Query: 57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISEL-KL-TMYAFQLQIKNDGVAQR--LLS 112
C CG G + G + L I P + EL K TM++ ++ D V + L
Sbjct: 157 CSHCGLKN-GTVKKAVGAV-LKIAFASPVSVDELGKFATMFSSNQEV-GDHVRKMKFTLL 213
Query: 113 SCCEVKEMLKRIPEETRKKL---AGKGYFPQDGYILEYLPVPPNCLSVPDISD-GVSTMS 168
+ V+++ I E L +G+ P D +L +PVPP C+ +S+ T
Sbjct: 214 NPLFVQKLFSNIKEGDIPVLMVRSGEEKHPND-LLLTRMPVPPVCIRPSVVSEVKAGTTE 272
Query: 169 SDLSIAMLKKVLKQVEIIRSSRSGTPN---FESQEVESNDLQLAVGQYL--EVRGTAKSS 223
D+++ +++ +L + + R G P+ FE+ E LQ+ Y+ E+ G
Sbjct: 273 DDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWE----HLQIQCALYINSEMSGLPPDM 328
Query: 224 RDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
+ A +Q K + R K FS R+VI+ D R++++GVP +A
Sbjct: 329 QPKRAMRAFTQ----RLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAM 384
Query: 284 RITFEERVNVHNINYLQELVDNKL-------CLTYSDGSSSYSLREGSKGHTF--LRPGQ 334
+TF E VN NI +++LV N L + L+ G + LR G
Sbjct: 385 TLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGD 444
Query: 335 VVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLF 394
+ R + D D V NR P+ HK S+ + V T + N C P +ADFDGD ++L
Sbjct: 445 TIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLH 504
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQLA 453
PQ+ AKAE EL +V+ L++ +G + D + ++ K FL +A + A
Sbjct: 505 LPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFA 564
Query: 454 MFALSP---------LPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKKSEVLK 504
+ +P PA+ R WT Q+++ ++ P S L K++
Sbjct: 565 AALIDASAKKQTKIRIPPPAIR--RPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYT 622
Query: 505 GDFD---RDTIPSVINEIVTSIFFEK 527
G+ + +D+ + N ++ + +K
Sbjct: 623 GNLELCSKDSYVIIRNSVLLAGCLDK 648
Score = 113 (44.8 bits), Expect = 1.3e-38, Sum P(4) = 1.3e-38
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HFER P AK G + F+ GL P E H++ RE +V ++ +E G + +
Sbjct: 816 HFER----KKKTPEAK-GFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRR 870
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQF 746
L+ L D+ YDGTVR+ + +I+F
Sbjct: 871 LVKCLEDLCASYDGTVRSSVGD-VIEF 896
Score = 107 (42.7 bits), Expect = 1.3e-38, Sum P(4) = 1.3e-38
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 45 NPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKN 103
+P +G+ + G C +CG C GHFGY +L +P++H I KLT+ Q KN
Sbjct: 58 DPKMGVSTKTGTCSTCGLGLTD-CVGHFGYFDLDVPVFH---IGFFKLTIQLLQCICKN 112
Score = 74 (31.1 bits), Expect = 1.3e-38, Sum P(4) = 1.3e-38
Identities = 31/96 (32%), Positives = 47/96 (48%)
Query: 987 TMVAKGV-L-KEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCF 1044
TM A G+ L + H++LLA+ MT G+++G G + S+ + F E T+ F
Sbjct: 1288 TMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASF-EKTM---DHLF 1343
Query: 1045 EKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLL 1080
E AA D + V G + VGTG+ F L+
Sbjct: 1344 E-AAFFSQRDVIHGVSECIIMGTPMTVGTGT-FKLM 1377
Score = 49 (22.3 bits), Expect = 4.9e-32, Sum P(4) = 4.9e-32
Identities = 43/179 (24%), Positives = 76/179 (42%)
Query: 718 KNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPA 777
KNL A ++ T +CS I+ Y AR ++ G VG +AAT++ P+
Sbjct: 1004 KNLEAYKTSLLANSCLTKTQLCS--FIELCYYKVAR---AITEPGTAVGAIAATSIGEPS 1058
Query: 778 YKAVLDS----SPSSNNSWE---LMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQE 830
+ L + +S N + +KEI+ V + PI +L D E
Sbjct: 1059 TQMTLKTFHFAGVASMNITQGVPRIKEIINA-VKTISTPIITAALLDPYD---------E 1108
Query: 831 RAAYMVKNQLKRVSLKDAAVEFLIEYKKPEIISDDEGLVGHIHLNKILLEDLRISMHDI 889
A VK ++++ +L + + +Y + + DD L+ ++ +I L L + M I
Sbjct: 1109 SLARRVKARIEKTTLGE-----ICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESI 1162
>UNIPROTKB|J9NW09 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
Length = 1789
Score = 352 (129.0 bits), Expect = 3.4e-38, Sum P(5) = 3.4e-38
Identities = 133/455 (29%), Positives = 204/455 (44%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + Y + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ K+ V+I R N + V + D++L Q+ +
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330
Query: 232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
S P + K L+ ++R + K FS+R+VIT D ++++GVP IA +TF
Sbjct: 331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390
Query: 288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
E V NI+ LQELV N Y D LR K L+ G V R +
Sbjct: 391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L PQSL
Sbjct: 451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510
Query: 401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS- 458
+AE+ EL V + +++ + + + D L +++ K+ FL++ L MF +
Sbjct: 511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 570
Query: 459 --PLPRPALSKARCSARWTALQILQSVLPPGFDSC 491
+P+PA+ K R WT QI S++ PG +C
Sbjct: 571 DGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINC 602
Score = 103 (41.3 bits), Expect = 3.4e-38, Sum P(5) = 3.4e-38
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V++
Sbjct: 814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873
Query: 730 CYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
YD TVRN N ++Q Y + S+
Sbjct: 874 KYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 89 (36.4 bits), Expect = 3.4e-38, Sum P(5) = 3.4e-38
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
Score = 72 (30.4 bits), Expect = 3.4e-38, Sum P(5) = 3.4e-38
Identities = 25/95 (26%), Positives = 37/95 (38%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
HL LL ++MTC G L+ G ++ F E +AA +D +
Sbjct: 1397 HLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV-----DVLMEAAAHGESDPM 1451
Query: 1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
V G+ GTG FDLL E ++ +
Sbjct: 1452 KGVSENIMLGQLAPAGTGC-FDLLLDAEKCKYGME 1485
Score = 50 (22.7 bits), Expect = 3.4e-38, Sum P(5) = 3.4e-38
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
+ ++ + ++ GE VG LAA ++ PA + L++
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNT 1106
>UNIPROTKB|F1PGS0 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
Length = 1969
Score = 352 (129.0 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 133/455 (29%), Positives = 204/455 (44%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + Y + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ K+ V+I R N + V + D++L Q+ +
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330
Query: 232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
S P + K L+ ++R + K FS+R+VIT D ++++GVP IA +TF
Sbjct: 331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390
Query: 288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
E V NI+ LQELV N Y D LR K L+ G V R +
Sbjct: 391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L PQSL
Sbjct: 451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510
Query: 401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS- 458
+AE+ EL V + +++ + + + D L +++ K+ FL++ L MF +
Sbjct: 511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 570
Query: 459 --PLPRPALSKARCSARWTALQILQSVLPPGFDSC 491
+P+PA+ K R WT QI S++ PG +C
Sbjct: 571 DGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINC 602
Score = 103 (41.3 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V++
Sbjct: 814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873
Query: 730 CYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
YD TVRN N ++Q Y + S+
Sbjct: 874 KYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 89 (36.4 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
Score = 72 (30.4 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 25/95 (26%), Positives = 37/95 (38%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
HL LL ++MTC G L+ G ++ F E +AA +D +
Sbjct: 1397 HLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV-----DVLMEAAAHGESDPM 1451
Query: 1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
V G+ GTG FDLL E ++ +
Sbjct: 1452 KGVSENIMLGQLAPAGTGC-FDLLLDAEKCKYGME 1485
Score = 50 (22.7 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
+ ++ + ++ GE VG LAA ++ PA + L++
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNT 1106
>UNIPROTKB|G3MZY8 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
Length = 1970
Score = 352 (129.0 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 133/455 (29%), Positives = 204/455 (44%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + Y + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ K+ V+I R N + V + D++L Q+ +
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330
Query: 232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
S P + K L+ ++R + K FS+R+VIT D ++++GVP IA +TF
Sbjct: 331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390
Query: 288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
E V NI+ LQELV N Y D LR K L+ G V R +
Sbjct: 391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L PQSL
Sbjct: 451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510
Query: 401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS- 458
+AE+ EL V + +++ + + + D L +++ K+ FL++ L MF +
Sbjct: 511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 570
Query: 459 --PLPRPALSKARCSARWTALQILQSVLPPGFDSC 491
+P+PA+ K R WT QI S++ PG +C
Sbjct: 571 DGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINC 602
Score = 103 (41.3 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V++
Sbjct: 814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873
Query: 730 CYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
YD TVRN N ++Q Y + S+
Sbjct: 874 KYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 89 (36.4 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
Score = 72 (30.4 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 25/95 (26%), Positives = 37/95 (38%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
HL LL ++MTC G L+ G ++ F E +AA +D +
Sbjct: 1398 HLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV-----DVLMEAAAHGESDPM 1452
Query: 1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
V G+ GTG FDLL E ++ +
Sbjct: 1453 KGVSENIMLGQLAPAGTGC-FDLLLDAEKCKYGME 1486
Score = 50 (22.7 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
+ ++ + ++ GE VG LAA ++ PA + L++
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNT 1106
>UNIPROTKB|P24928 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006366
"transcription from RNA polymerase II promoter"
evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
Length = 1970
Score = 352 (129.0 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 133/455 (29%), Positives = 204/455 (44%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + Y + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ K+ V+I R N + V + D++L Q+ +
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330
Query: 232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
S P + K L+ ++R + K FS+R+VIT D ++++GVP IA +TF
Sbjct: 331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390
Query: 288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
E V NI+ LQELV N Y D LR K L+ G V R +
Sbjct: 391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L PQSL
Sbjct: 451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510
Query: 401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS- 458
+AE+ EL V + +++ + + + D L +++ K+ FL++ L MF +
Sbjct: 511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 570
Query: 459 --PLPRPALSKARCSARWTALQILQSVLPPGFDSC 491
+P+PA+ K R WT QI S++ PG +C
Sbjct: 571 DGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINC 602
Score = 103 (41.3 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V++
Sbjct: 814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873
Query: 730 CYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
YD TVRN N ++Q Y + S+
Sbjct: 874 KYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 89 (36.4 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
Score = 72 (30.4 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 25/95 (26%), Positives = 37/95 (38%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
HL LL ++MTC G L+ G ++ F E +AA +D +
Sbjct: 1397 HLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV-----DVLMEAAAHGESDPM 1451
Query: 1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
V G+ GTG FDLL E ++ +
Sbjct: 1452 KGVSENIMLGQLAPAGTGC-FDLLLDAEKCKYGME 1485
Score = 50 (22.7 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
+ ++ + ++ GE VG LAA ++ PA + L++
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNT 1106
>MGI|MGI:98086 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
GermOnline:ENSMUSG00000005198 Uniprot:P08775
Length = 1970
Score = 352 (129.0 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 133/455 (29%), Positives = 204/455 (44%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + Y + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ K+ V+I R N + V + D++L Q+ +
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330
Query: 232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
S P + K L+ ++R + K FS+R+VIT D ++++GVP IA +TF
Sbjct: 331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390
Query: 288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
E V NI+ LQELV N Y D LR K L+ G V R +
Sbjct: 391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L PQSL
Sbjct: 451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510
Query: 401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS- 458
+AE+ EL V + +++ + + + D L +++ K+ FL++ L MF +
Sbjct: 511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 570
Query: 459 --PLPRPALSKARCSARWTALQILQSVLPPGFDSC 491
+P+PA+ K R WT QI S++ PG +C
Sbjct: 571 DGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINC 602
Score = 103 (41.3 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V++
Sbjct: 814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873
Query: 730 CYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
YD TVRN N ++Q Y + S+
Sbjct: 874 KYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 89 (36.4 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
Score = 72 (30.4 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 25/95 (26%), Positives = 37/95 (38%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
HL LL ++MTC G L+ G ++ F E +AA +D +
Sbjct: 1397 HLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV-----DVLMEAAAHGESDPM 1451
Query: 1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
V G+ GTG FDLL E ++ +
Sbjct: 1452 KGVSENIMLGQLAPAGTGC-FDLLLDAEKCKYGME 1485
Score = 50 (22.7 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
+ ++ + ++ GE VG LAA ++ PA + L++
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNT 1106
>RGD|1587326 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
Uniprot:D4A5A6
Length = 1970
Score = 352 (129.0 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 133/455 (29%), Positives = 204/455 (44%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + Y + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ K+ V+I R N + V + D++L Q+ +
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330
Query: 232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
S P + K L+ ++R + K FS+R+VIT D ++++GVP IA +TF
Sbjct: 331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390
Query: 288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
E V NI+ LQELV N Y D LR K L+ G V R +
Sbjct: 391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L PQSL
Sbjct: 451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510
Query: 401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS- 458
+AE+ EL V + +++ + + + D L +++ K+ FL++ L MF +
Sbjct: 511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 570
Query: 459 --PLPRPALSKARCSARWTALQILQSVLPPGFDSC 491
+P+PA+ K R WT QI S++ PG +C
Sbjct: 571 DGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINC 602
Score = 103 (41.3 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V++
Sbjct: 814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873
Query: 730 CYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
YD TVRN N ++Q Y + S+
Sbjct: 874 KYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 89 (36.4 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
Score = 72 (30.4 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 25/95 (26%), Positives = 37/95 (38%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
HL LL ++MTC G L+ G ++ F E +AA +D +
Sbjct: 1397 HLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETV-----DVLMEAAAHGESDPM 1451
Query: 1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
V G+ GTG FDLL E ++ +
Sbjct: 1452 KGVSENIMLGQLAPAGTGC-FDLLLDAEKCKYGME 1485
Score = 50 (22.7 bits), Expect = 6.3e-38, Sum P(5) = 6.3e-38
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
+ ++ + ++ GE VG LAA ++ PA + L++
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNT 1106
>FB|FBgn0003277 [details] [associations]
symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
"polytene chromosome" evidence=IDA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
Uniprot:P04052
Length = 1887
Score = 330 (121.2 bits), Expect = 1.9e-37, Sum P(6) = 1.9e-37
Identities = 126/438 (28%), Positives = 189/438 (43%)
Query: 64 EPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
+P K GH G Y PS I L + A D ++++ S V E+LK
Sbjct: 166 DPNKKPGHGGCGH-----YQPS-IRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKH 219
Query: 124 IPEETRKKLA-GKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQ 182
I +E L Y D I+ LPVPP + + G + DL+ + +
Sbjct: 220 ITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKAN 279
Query: 183 VEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKA 242
E+ ++ SG QE LQ V ++ + S P KA
Sbjct: 280 NELRKNEASGAAAHVIQE-NIKMLQFHVATLVD-----NDMPGMPRAMQKSGKPLKAIKA 333
Query: 243 WLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINY 298
L+ ++R + K FS+R+VIT D R++++GVP IAQ +TF E V NI+
Sbjct: 334 RLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDR 393
Query: 299 LQELV--DNKLC--LTY--SDGSSSYSLREGSKGHTF-LRPGQVVHRRIMDGDTVFINRP 351
+QELV N Y D LR K L+ G V R + D D V NR
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQ 453
Query: 352 PTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSV 411
PT HK S+ V V T ++N P +ADFDGD ++L PQS+ +AEV +
Sbjct: 454 PTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHIT 513
Query: 412 EKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSK 467
+Q+++ + + D L +++ M K+ F+ + L MF + +P+P + K
Sbjct: 514 PRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILK 573
Query: 468 ARCSARWTALQILQSVLP 485
R WT QI ++P
Sbjct: 574 PR--PLWTGKQIFSLIIP 589
Score = 103 (41.3 bits), Expect = 1.9e-37, Sum P(6) = 1.9e-37
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V++
Sbjct: 806 DYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 865
Query: 730 CYDGTVRNVCSNSIIQFDY 748
YDGTVRN +IQ Y
Sbjct: 866 NYDGTVRNSVGQ-LIQLRY 883
Score = 90 (36.7 bits), Expect = 1.9e-37, Sum P(6) = 1.9e-37
Identities = 25/99 (25%), Positives = 48/99 (48%)
Query: 1 MEENTSSTILEGQIVGIRFGLATQKEICTASISDCSISHASQL--ANPFLGLPLE----- 53
M T S Q+ ++FG+ + EI S+++ + A + P LG ++
Sbjct: 1 MSTPTDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGV 60
Query: 54 ---FGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISE 89
+C++C + +C GHFG+I+L P++H I++
Sbjct: 61 IDRTSRCQTCAGNMT-ECPGHFGHIDLAKPVFHIGFITK 98
Score = 70 (29.7 bits), Expect = 1.9e-37, Sum P(6) = 1.9e-37
Identities = 34/127 (26%), Positives = 48/127 (37%)
Query: 963 IYPVL-LETIIKENWWVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKA 1021
I+ VL +E + K V + ++A + V HL LL + MT G L+ G
Sbjct: 1357 IFQVLGIEAVRKS---VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINR 1413
Query: 1022 LSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLW 1081
++ F E AA TD + V G+ +GTG FDLL
Sbjct: 1414 QDTGALMRCSFEETV-----DVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGC-FDLLL 1467
Query: 1082 QTENEEF 1088
E F
Sbjct: 1468 DAEKCRF 1474
Score = 61 (26.5 bits), Expect = 1.9e-37, Sum P(6) = 1.9e-37
Identities = 18/87 (20%), Positives = 45/87 (51%)
Query: 490 SCGD-RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
S GD + +++ E++ G + ++ + ++ F E G + F+ ++Q ++ L
Sbjct: 614 SPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLL 673
Query: 549 ADGFSVSLEDFSLSKAALWN-IQKEIQ 574
+G S+ + D +++ +N IQ+ I+
Sbjct: 674 FEGHSIGIGD-TIADPQTYNEIQQAIK 699
Score = 53 (23.7 bits), Expect = 1.9e-37, Sum P(6) = 1.9e-37
Identities = 34/134 (25%), Positives = 61/134 (45%)
Query: 762 GEPVGVLAATAMSNPAYKAVLDS----SPSSNN---SWELMKEILLCRVSFNNDPIDRRV 814
GE VG LAA ++ PA + L++ SS N +KEI ++ + P +
Sbjct: 1076 GEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI----INISKKPKAPSL 1131
Query: 815 ILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKK-PE--IISDDEGLVGH 871
++L G R E+A ++ +L+ +L+ I Y P+ +IS+D+ V +
Sbjct: 1132 TVFLTG-GAARD--AEKAKNVLC-RLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFV-N 1186
Query: 872 IHLNKILLEDLRIS 885
++ + RIS
Sbjct: 1187 VYYEMPDFDPTRIS 1200
Score = 40 (19.1 bits), Expect = 5.5e-28, Sum P(4) = 5.5e-28
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1286 DRQENVGGSASKPLSGWG-AKA---SWGKSSEDKLEEVETTVAK 1325
D ++ GGSA K L+ + KA S K S + +V V +
Sbjct: 739 DARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQ 782
>SGD|S000005642 [details] [associations]
symbol:RPO31 "RNA polymerase III largest subunit C160"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 SGD:S000005642
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:X90518
EMBL:X94335 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 KO:K03018 OrthoDB:EOG4X3M8C
eggNOG:COG0086 GO:GO:0032549 Reactome:REACT_87991 GO:GO:0042797
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222974
PANTHER:PTHR19376:SF15 EMBL:X03129 EMBL:Z75024 PIR:A00694
RefSeq:NP_014759.1 ProteinModelPortal:P04051 SMR:P04051
DIP:DIP-612N IntAct:P04051 MINT:MINT-557787 STRING:P04051
PaxDb:P04051 PeptideAtlas:P04051 EnsemblFungi:YOR116C GeneID:854283
KEGG:sce:YOR116C CYGD:YOR116c OMA:CINELDN NextBio:976257
Genevestigator:P04051 GermOnline:YOR116C Uniprot:P04051
Length = 1460
Score = 310 (114.2 bits), Expect = 6.5e-37, Sum P(4) = 6.5e-37
Identities = 102/369 (27%), Positives = 170/369 (46%)
Query: 143 YILEYLPVPPNCLSVPDI--SDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQE 200
YI YLP PP C+ P + D ++ DL++ L +++ +I++ + +
Sbjct: 256 YIWRYLPAPPVCIR-PSVMMQDSPASNEDDLTVK-LTEIVWTSSLIKAGLDKGISINNMM 313
Query: 201 VESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG--- 257
+ LQL V Y+ + + G P L+ + F SG
Sbjct: 314 EHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRV 373
Query: 258 -FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCL 309
FS R+VI+ D ++E+ VP +A+ +T+ E+V +N + LQEL+ N L
Sbjct: 374 DFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYL 433
Query: 310 TYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVH 367
+ + +LR G + L+ G VV R + DGD V NR P+ H+ S+ + +
Sbjct: 434 LKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIR 493
Query: 368 DDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQL 427
T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G +
Sbjct: 494 PWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAA 553
Query: 428 ATDALL-SLKVMFKKYFLDKA-FTQQLAMFALS----PLPRPALSKARCSARWTALQILQ 481
D + S + K F D+A TQ L+M + +P PA+ K WT Q+
Sbjct: 554 TQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFDIPPPAIMKPYYL--WTGKQVFS 611
Query: 482 SVLPPGFDS 490
++ P +S
Sbjct: 612 LLIKPNHNS 620
Score = 139 (54.0 bits), Expect = 6.5e-37, Sum P(4) = 6.5e-37
Identities = 46/162 (28%), Positives = 76/162 (46%)
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+P + P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM L
Sbjct: 835 FPKNSKTPQSK-GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSL 893
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
D+ YD TVR +N I+QF Y + + +PV + + AY ++
Sbjct: 894 EDLSCQYDNTVRT-SANGIVQFTYGGDGLDPLEMEGNAQPVNFNRSW---DHAYNITFNN 949
Query: 785 SPSSNNSWELMK---EILLCRVSFNNDPIDRRVILYLNDCGC 823
+ +M+ EIL P++ R++ Y N GC
Sbjct: 950 QDKGLLPYAIMETANEIL--------GPLEERLVRYDNS-GC 982
Score = 85 (35.0 bits), Expect = 6.5e-37, Sum P(4) = 6.5e-37
Identities = 35/158 (22%), Positives = 63/158 (39%)
Query: 23 TQKEICTASISDCSISHASQL---ANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPI 79
++ E+ T + D A + +P +G+ +C +C C GHFG+++L +
Sbjct: 30 SEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECATCH-GNLASCHGHFGHLKLAL 88
Query: 80 PIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFP 139
P++H I K T+ Q KN +L S + ++ L + L G
Sbjct: 89 PVFH---IGYFKATIQILQGICKN---CSAILLSETDKRQFLHELRRPGVDNLRRMGILK 142
Query: 140 QDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 177
+ IL+ CL ++ V ++ A LK
Sbjct: 143 K---ILDQCKKQRRCLHCGALNGVVKKAAAGAGSAALK 177
Score = 69 (29.3 bits), Expect = 6.5e-37, Sum P(4) = 6.5e-37
Identities = 21/99 (21%), Positives = 48/99 (48%)
Query: 496 LIKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
+I+ S++L G D+ + + + +I + GP+E + + L L GFS+
Sbjct: 653 IIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSI 712
Query: 555 SLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDL 593
+ D + + +++++ + L + YH+ +EL+ L
Sbjct: 713 GINDVTPAD----DLKQKKEELVEIAYHKC---DELITL 744
Score = 57 (25.1 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 51/224 (22%), Positives = 96/224 (42%)
Query: 683 FFHGLDPYEEMTHSISTREVIVRSSRG---LSEPGTLFKNLMAV-----LRDVVICYDGT 734
F+H L Y + +T +R SRG L EP K L + + D V
Sbjct: 1004 FYHSLREY---INGKATALANLRKSRGMLGLLEPPA--KELQGIDPDETVPDNVKTSVSQ 1058
Query: 735 VRNVCSNSIIQF-DYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSS-----PSS 788
+ + S+ +F + A+ + L P G +G + A ++ P + L + S
Sbjct: 1059 LYRISEKSVRKFLEIALFKYRKARLEP-GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 1117
Query: 789 NNSWEL--MKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLK 846
N + + +KEI+ + PI V++ ND ERAA +VK ++++ L
Sbjct: 1118 NVTLGVPRIKEIINASKVIST-PIINAVLVNDND---------ERAARVVKGRVEKTLLS 1167
Query: 847 DAAVEFLIEYKKPEI----ISDDEGLVGHIHLNKILLEDLRISM 886
D A ++ + K + + D G + + L ++ +ED+ +++
Sbjct: 1168 DVAF-YVQDVYKDNLSFIQVRIDLGTIDKLQL-ELTIEDIAVAI 1209
Score = 42 (19.8 bits), Expect = 5.9e-27, Sum P(4) = 5.9e-27
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 651 KTLVEDIASHFERIYPMDLNY 671
KTL+ D+A + + +Y +L++
Sbjct: 1163 KTLLSDVAFYVQDVYKDNLSF 1183
>UNIPROTKB|I3LJR4 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04992
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GeneTree:ENSGT00700000104490 EMBL:FP565284
Ensembl:ENSSSCT00000029425 Uniprot:I3LJR4
Length = 1010
Score = 352 (129.0 bits), Expect = 7.2e-37, Sum P(3) = 7.2e-37
Identities = 133/455 (29%), Positives = 204/455 (44%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + Y + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ K+ V+I R N + V + D++L Q+ +
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330
Query: 232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
S P + K L+ ++R + K FS+R+VIT D ++++GVP IA +TF
Sbjct: 331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390
Query: 288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
E V NI+ LQELV N Y D LR K L+ G V R +
Sbjct: 391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L PQSL
Sbjct: 451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510
Query: 401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS- 458
+AE+ EL V + +++ + + + D L +++ K+ FL++ L MF +
Sbjct: 511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 570
Query: 459 --PLPRPALSKARCSARWTALQILQSVLPPGFDSC 491
+P+PA+ K R WT QI S++ PG +C
Sbjct: 571 DGKVPQPAILKPR--PLWTGKQIF-SLIIPGHINC 602
Score = 103 (41.3 bits), Expect = 7.2e-37, Sum P(3) = 7.2e-37
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V++
Sbjct: 814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873
Query: 730 CYDGTVRNVCSNSIIQFDYAVNARKSHSL 758
YD TVRN N ++Q Y + S+
Sbjct: 874 KYDATVRNSI-NQVVQLRYGEDGLAGESV 901
Score = 89 (36.4 bits), Expect = 7.2e-37, Sum P(3) = 7.2e-37
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>ZFIN|ZDB-GENE-041008-78 [details] [associations]
symbol:polr2a "polymerase (RNA) II (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
Uniprot:F1Q9K4
Length = 1965
Score = 349 (127.9 bits), Expect = 8.5e-37, Sum P(5) = 8.5e-37
Identities = 120/419 (28%), Positives = 195/419 (46%)
Query: 82 YHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLA-GKGYFPQ 140
Y P I L +YA + D +++L S V E+ KRI +E L Y
Sbjct: 184 YQP-RIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDIILGMDPKYARP 242
Query: 141 DGYILEYLPVPPNCLSVPDISDGVSTMSSDLS--IAMLKKVLKQVEIIRSSRSGTP-NFE 197
+ I+ LPVPP + + G + DL+ +A + K+ Q++ R+ +SG +
Sbjct: 243 EWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLK--RNEQSGAAAHVI 300
Query: 198 SQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG 257
+++V+ +A E+ G ++ + + K ++R + K
Sbjct: 301 AEDVKLLQFHVATMVDNELPGLPRAMQKSGRPL---KSIKQRLKGKEGRVRGNLMGKRVD 357
Query: 258 FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV--DNKLC--LTY-- 311
FS+R+VIT D +++++GVP IA +TF E V NI+ LQELV N Y
Sbjct: 358 FSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYII 417
Query: 312 SDGSSSYSLREGSK-GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDH 370
D LR K L+ G V R + DGD + NR PT HK S+ V +
Sbjct: 418 RDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWS 477
Query: 371 TVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATD 430
T ++N + P +ADFDGD ++L PQSL +AE+ EL V + +++ + + + D
Sbjct: 478 TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD 537
Query: 431 ALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQSVLP 485
L +++ K+ FL++ L MF + +P+PA+ K R WT QI ++P
Sbjct: 538 TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPR--PLWTGKQIFSLIIP 594
Score = 102 (41.0 bits), Expect = 8.5e-37, Sum P(5) = 8.5e-37
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 670 NYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVI 729
+Y G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V++
Sbjct: 811 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 870
Query: 730 CYDGTVRNVCSNSIIQFDY 748
YD TVRN N ++Q Y
Sbjct: 871 KYDATVRNSI-NQVVQLRY 888
Score = 94 (38.1 bits), Expect = 8.5e-37, Sum P(5) = 8.5e-37
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 19 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGNMT- 77
Query: 67 KCEGHFGYIELPIPIYHPSHISEL 90
+C GHFG+IEL P++H I+++
Sbjct: 78 ECPGHFGHIELAKPVFHVGFITKI 101
Score = 70 (29.7 bits), Expect = 8.5e-37, Sum P(5) = 8.5e-37
Identities = 24/95 (25%), Positives = 37/95 (38%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
HL LL ++MTC G L+ G ++ F E +A+ +D +
Sbjct: 1394 HLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETV-----DVLMEASSHGESDPM 1448
Query: 1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
V G+ GTG FDLL E ++ +
Sbjct: 1449 KGVSENIMLGQLAPAGTGC-FDLLLDAEKCKYGME 1482
Score = 53 (23.7 bits), Expect = 8.4e-32, Sum P(5) = 8.4e-32
Identities = 27/95 (28%), Positives = 41/95 (43%)
Query: 697 ISTREVIVRS----SRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYA--- 749
+S + VIV SR E TL N+ LR +C S FD+
Sbjct: 1013 LSKKLVIVNGDDQLSRQAQENATLLFNIH--LRST-LCSKRMTEEF-RLSTEAFDWLLGE 1068
Query: 750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
+ + + S+ GE VG LAA ++ PA + L++
Sbjct: 1069 IETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNT 1103
Score = 40 (19.1 bits), Expect = 8.5e-37, Sum P(5) = 8.5e-37
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 1254 GKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKAS 1307
G FG P +S + + W + A+ + G +VG + +G+ A+
Sbjct: 1497 GMFFGSAPSPMSGMSPAMTPWNTGAT--PAYGAWSPSVGSGMTPGAAGFSPSAA 1548
Score = 38 (18.4 bits), Expect = 1.6e-33, Sum P(5) = 1.6e-33
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1222 EASWGESSCDKWENVGSPAAKSFSEWGTE 1250
E + +S E VG+ AA+S E T+
Sbjct: 1070 ETKFNQSIAHPGEMVGALAAQSLGEPATQ 1098
>GENEDB_PFALCIPARUM|PF13_0150 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase 3
largest subunit" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 239 (89.2 bits), Expect = 1.9e-36, Sum P(6) = 1.9e-36
Identities = 69/208 (33%), Positives = 104/208 (50%)
Query: 291 VNVHNIN---YLQ-ELVDNKLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGD 344
VN HN N Y + DN+ S + SL+ +K H L G VV R I DGD
Sbjct: 512 VNNHNNNNNIYCNNQTQDNEEERKNSQ-FNKISLKYANKNHVIQNLNIGDVVERHICDGD 570
Query: 345 TVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
V NR P+ H+ S+ + D T + N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 571 IVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNECVCSPYNADFDGDEMNLHVPQTEEARAE 630
Query: 405 VLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDK-AFTQQLAMFALSPL-- 460
L L +V+ L++ NG + + L D L + ++ K FLD+ F + F+ + L
Sbjct: 631 ALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDRDTFCLLCSYFSDASLYI 690
Query: 461 --PRPALSKARCSARWTALQILQSVLPP 486
P PA+ K + WT Q++ ++ P
Sbjct: 691 ELPIPAILKPK--ELWTGKQLISVLIKP 716
Score = 123 (48.4 bits), Expect = 1.9e-36, Sum P(6) = 1.9e-36
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G ++ F+ GL P E H++S RE +V ++ +E G + + LM L D+ I YD +VR
Sbjct: 943 GFVQNSFYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVR 1002
Query: 737 NVCSNSIIQFDYAVNA 752
+ C I+QF Y +A
Sbjct: 1003 S-CDKQIVQFIYGDDA 1017
Score = 120 (47.3 bits), Expect = 1.9e-36, Sum P(6) = 1.9e-36
Identities = 50/188 (26%), Positives = 88/188 (46%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVES 203
I+ L VPPN + I D T DL+ +L ++ + I + T +++ +
Sbjct: 247 IITALLVPPNTIRPSVIIDEHGTAEDDLT-CILSEITQLNNTIYNQC--TNGYQTNQFLG 303
Query: 204 ND--LQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEK---MRTLFIRKGSGF 258
N LQL + +++ A S + A +S+ + K R K F
Sbjct: 304 NVEFLQLQITRFINSDSPAVSQ--LLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDF 361
Query: 259 SSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSY 318
SSR+VI+ D ++E+ +P IA R+T+ E VN +NI+ L+ L+ N C + ++Y
Sbjct: 362 SSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNG-CNKWP--GANY 418
Query: 319 SLREGSKG 326
+++ KG
Sbjct: 419 IIKKSKKG 426
Score = 95 (38.5 bits), Expect = 1.9e-36, Sum P(6) = 1.9e-36
Identities = 30/117 (25%), Positives = 56/117 (47%)
Query: 13 QIVGIRFGLATQKEICTAS---ISDCSI-SHASQLANPFLGLPLEFGK------CESCGT 62
+I IRFG+ ++++I S I + + + S + P+ L L+ G CE+C
Sbjct: 34 EIKSIRFGIMSKEDIIKYSEVKIMNREMYKNNSGIPYPYGVLDLKLGAHKSNSVCETCN- 92
Query: 63 SEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKE 119
+ C GHFGYIEL P++H + + +Y + +++ + C +K+
Sbjct: 93 KKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLSKEKIDFYCNLKK 149
Score = 91 (37.1 bits), Expect = 1.9e-36, Sum P(6) = 1.9e-36
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
H++LLA+ M GD++G N G + +S + F E + F K ++ +N+
Sbjct: 2253 HIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDE--INNI 2310
Query: 1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEE 1087
S + GK++ +GTG+ F LL+ + E+
Sbjct: 2311 SESIIV---GKNIPIGTGA-FQLLYDYKFEK 2337
Score = 42 (19.8 bits), Expect = 2.7e-28, Sum P(6) = 2.7e-28
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 746 FDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSF 805
F Y ++ SH + L + SN +D S E K++LL
Sbjct: 775 FYYLIHHNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLK---- 830
Query: 806 NNDPIDRRVILY 817
+ ++ +ILY
Sbjct: 831 GYEKVNNEIILY 842
Score = 40 (19.1 bits), Expect = 1.9e-36, Sum P(6) = 1.9e-36
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 833 AYMVKNQLKRVSLKDAAVEFLIEYKKPEI---ISDDEGLVGHIHLN 875
A M+K++L++ +++D + +Y + + +E L+ + LN
Sbjct: 1859 ALMMKSKLEKTTIRDICMYIKEDYTSRGVFLSVKFNEELIQKLFLN 1904
Score = 40 (19.1 bits), Expect = 1.8e-08, Sum P(5) = 1.8e-08
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
+P A Y +IK G+DPY +++ S + + SS G S
Sbjct: 413 WPGANY-IIKKSK-KGIDPYSDISTSYNNNSNNI-SSIGCS 450
Score = 40 (19.1 bits), Expect = 0.00028, Sum P(4) = 0.00028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 74 YIELPIP-IYHPSHI 87
YIELPIP I P +
Sbjct: 689 YIELPIPAILKPKEL 703
Score = 39 (18.8 bits), Expect = 3.3e-31, Sum P(6) = 3.3e-31
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 1602 NDGDRLSADDKSFIFDNVFN 1621
ND + + DD + I D +FN
Sbjct: 2070 NDDNNNNNDDDNKINDTIFN 2089
Score = 38 (18.4 bits), Expect = 1.8e-08, Sum P(5) = 1.8e-08
Identities = 17/73 (23%), Positives = 32/73 (43%)
Query: 783 DSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKR 842
D + + NN ++ E LC V+ +N+ N+ C + Q+ +Q +
Sbjct: 492 DINNNINNIYKNTSETNLCNVNNHNNN---------NNIYCNNQ-TQDNEEERKNSQFNK 541
Query: 843 VSLKDAAVEFLIE 855
+SLK A +I+
Sbjct: 542 ISLKYANKNHVIQ 554
>UNIPROTKB|Q8IE49 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 239 (89.2 bits), Expect = 1.9e-36, Sum P(6) = 1.9e-36
Identities = 69/208 (33%), Positives = 104/208 (50%)
Query: 291 VNVHNIN---YLQ-ELVDNKLCLTYSDGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGD 344
VN HN N Y + DN+ S + SL+ +K H L G VV R I DGD
Sbjct: 512 VNNHNNNNNIYCNNQTQDNEEERKNSQ-FNKISLKYANKNHVIQNLNIGDVVERHICDGD 570
Query: 345 TVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
V NR P+ H+ S+ + D T + N +C P +ADFDGD ++L PQ+ A+AE
Sbjct: 571 IVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNECVCSPYNADFDGDEMNLHVPQTEEARAE 630
Query: 405 VLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDK-AFTQQLAMFALSPL-- 460
L L +V+ L++ NG + + L D L + ++ K FLD+ F + F+ + L
Sbjct: 631 ALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDRDTFCLLCSYFSDASLYI 690
Query: 461 --PRPALSKARCSARWTALQILQSVLPP 486
P PA+ K + WT Q++ ++ P
Sbjct: 691 ELPIPAILKPK--ELWTGKQLISVLIKP 716
Score = 123 (48.4 bits), Expect = 1.9e-36, Sum P(6) = 1.9e-36
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G ++ F+ GL P E H++S RE +V ++ +E G + + LM L D+ I YD +VR
Sbjct: 943 GFVQNSFYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVR 1002
Query: 737 NVCSNSIIQFDYAVNA 752
+ C I+QF Y +A
Sbjct: 1003 S-CDKQIVQFIYGDDA 1017
Score = 120 (47.3 bits), Expect = 1.9e-36, Sum P(6) = 1.9e-36
Identities = 50/188 (26%), Positives = 88/188 (46%)
Query: 144 ILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVES 203
I+ L VPPN + I D T DL+ +L ++ + I + T +++ +
Sbjct: 247 IITALLVPPNTIRPSVIIDEHGTAEDDLT-CILSEITQLNNTIYNQC--TNGYQTNQFLG 303
Query: 204 ND--LQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEK---MRTLFIRKGSGF 258
N LQL + +++ A S + A +S+ + K R K F
Sbjct: 304 NVEFLQLQITRFINSDSPAVSQ--LLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDF 361
Query: 259 SSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSY 318
SSR+VI+ D ++E+ +P IA R+T+ E VN +NI+ L+ L+ N C + ++Y
Sbjct: 362 SSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNG-CNKWP--GANY 418
Query: 319 SLREGSKG 326
+++ KG
Sbjct: 419 IIKKSKKG 426
Score = 95 (38.5 bits), Expect = 1.9e-36, Sum P(6) = 1.9e-36
Identities = 30/117 (25%), Positives = 56/117 (47%)
Query: 13 QIVGIRFGLATQKEICTAS---ISDCSI-SHASQLANPFLGLPLEFGK------CESCGT 62
+I IRFG+ ++++I S I + + + S + P+ L L+ G CE+C
Sbjct: 34 EIKSIRFGIMSKEDIIKYSEVKIMNREMYKNNSGIPYPYGVLDLKLGAHKSNSVCETCN- 92
Query: 63 SEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKE 119
+ C GHFGYIEL P++H + + +Y + +++ + C +K+
Sbjct: 93 KKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLSKEKIDFYCNLKK 149
Score = 91 (37.1 bits), Expect = 1.9e-36, Sum P(6) = 1.9e-36
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
H++LLA+ M GD++G N G + +S + F E + F K ++ +N+
Sbjct: 2253 HIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDE--INNI 2310
Query: 1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEE 1087
S + GK++ +GTG+ F LL+ + E+
Sbjct: 2311 SESIIV---GKNIPIGTGA-FQLLYDYKFEK 2337
Score = 42 (19.8 bits), Expect = 2.7e-28, Sum P(6) = 2.7e-28
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 746 FDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELMKEILLCRVSF 805
F Y ++ SH + L + SN +D S E K++LL
Sbjct: 775 FYYLIHHNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLK---- 830
Query: 806 NNDPIDRRVILY 817
+ ++ +ILY
Sbjct: 831 GYEKVNNEIILY 842
Score = 40 (19.1 bits), Expect = 1.9e-36, Sum P(6) = 1.9e-36
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 833 AYMVKNQLKRVSLKDAAVEFLIEYKKPEI---ISDDEGLVGHIHLN 875
A M+K++L++ +++D + +Y + + +E L+ + LN
Sbjct: 1859 ALMMKSKLEKTTIRDICMYIKEDYTSRGVFLSVKFNEELIQKLFLN 1904
Score = 40 (19.1 bits), Expect = 1.8e-08, Sum P(5) = 1.8e-08
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 671 YPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLS 711
+P A Y +IK G+DPY +++ S + + SS G S
Sbjct: 413 WPGANY-IIKKSK-KGIDPYSDISTSYNNNSNNI-SSIGCS 450
Score = 40 (19.1 bits), Expect = 0.00028, Sum P(4) = 0.00028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 74 YIELPIP-IYHPSHI 87
YIELPIP I P +
Sbjct: 689 YIELPIPAILKPKEL 703
Score = 39 (18.8 bits), Expect = 3.3e-31, Sum P(6) = 3.3e-31
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 1602 NDGDRLSADDKSFIFDNVFN 1621
ND + + DD + I D +FN
Sbjct: 2070 NDDNNNNNDDDNKINDTIFN 2089
Score = 38 (18.4 bits), Expect = 1.8e-08, Sum P(5) = 1.8e-08
Identities = 17/73 (23%), Positives = 32/73 (43%)
Query: 783 DSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKR 842
D + + NN ++ E LC V+ +N+ N+ C + Q+ +Q +
Sbjct: 492 DINNNINNIYKNTSETNLCNVNNHNNN---------NNIYCNNQ-TQDNEEERKNSQFNK 541
Query: 843 VSLKDAAVEFLIE 855
+SLK A +I+
Sbjct: 542 ISLKYANKNHVIQ 554
>CGD|CAL0002215 [details] [associations]
symbol:orf19.3103 species:5476 "Candida albicans" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 CGD:CAL0002215 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AACQ01000086 KO:K03018 eggNOG:COG0086
GO:GO:0032549 PANTHER:PTHR19376:SF15 RefSeq:XP_715412.1
ProteinModelPortal:Q5A0Z3 STRING:Q5A0Z3 GeneID:3642908
KEGG:cal:CaO19.3103 Uniprot:Q5A0Z3
Length = 1448
Score = 299 (110.3 bits), Expect = 2.6e-36, Sum P(5) = 2.6e-36
Identities = 105/374 (28%), Positives = 178/374 (47%)
Query: 135 KGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTP 194
KG P+ YI YLP PP C+ + D S DL++ L +++ +IR+
Sbjct: 248 KGGRPEM-YIWRYLPAPPVCIRPSVMMDSQSN-EDDLTVK-LTEIVWTSSMIRAGIVKGI 304
Query: 195 NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIR- 253
+ + + + LQL+V Y+ + S+ + G + +A+ ++++ R
Sbjct: 305 SINNLMEQWDYLQLSVAMYIN----SDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRF 360
Query: 254 KG--SG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKL 307
+G SG FS R+VI+ D +++E+ VP +A+ +T+ E+ +N LQ+LV N
Sbjct: 361 RGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGP 420
Query: 308 CL----TY---SDGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
+ Y + +LR G K L+ G VV R I DGD V NR P+ H+ S
Sbjct: 421 DIHPGANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLS 480
Query: 359 LQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSS 418
+ + + T ++N +C P +ADFDGD ++L PQ+ A+AE + L V+ LL+
Sbjct: 481 ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTP 540
Query: 419 HNGNLNLQLATDALL-SLKVMFKKYFLDKA-FTQQLAMFALSPL----PRPALSKARCSA 472
+G + D + S + K F D+A Q L+M + + + P P + K
Sbjct: 541 KSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKP--VM 598
Query: 473 RWTALQILQSVLPP 486
WT Q+ ++ P
Sbjct: 599 LWTGKQVFSLLIKP 612
Score = 144 (55.7 bits), Expect = 2.6e-36, Sum P(5) = 2.6e-36
Identities = 56/200 (28%), Positives = 94/200 (47%)
Query: 672 PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
P +K G ++ FF GL P E + H+IS RE +V ++ +E G + + LM L D+ Y
Sbjct: 837 PQSK-GFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQY 895
Query: 732 DGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMS-NPAYKAVLDSSPSSNN 790
D TVRN SN I+QF Y + + + +PV + N Y V D+S
Sbjct: 896 DNTVRN-SSNGIVQFTYGGDGLDPYDMEGDAKPVNFNRQWDHAYNLTYN-VDDASLLPYQ 953
Query: 791 SWELMKEILLCRVSFNNDPIDRRVILYLN-DCGCGRKYCQERAAYMVKNQLKRVSLKDAA 849
EL+ +L P++ ++I Y N K +++ Y+ +N +R K
Sbjct: 954 IEELVDSVLA--------PLENKLIRYDNLGNALNDKEKEQKIEYIDQNDGERDFYKSIR 1005
Query: 850 VEFLIEYK-KPEIISDDEGL 868
+FL + + ++ ++ GL
Sbjct: 1006 -DFLTKKSIRLALLREERGL 1024
Score = 78 (32.5 bits), Expect = 2.6e-36, Sum P(5) = 2.6e-36
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 48 LGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISEL 90
+G+ +C +C C GHFG+I L +P++H + +
Sbjct: 58 MGISSNAQECSTCH-GNLASCHGHFGHIRLALPVFHVGYFKSI 99
Score = 62 (26.9 bits), Expect = 2.6e-36, Sum P(5) = 2.6e-36
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
H+ LL + MT G+++G G + S+ F + T + F+ A ++ D +
Sbjct: 1344 HIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHL----FDAAFFMKN-DKI 1398
Query: 1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEE 1087
V G+ +++GTGS F L+ + E+
Sbjct: 1399 EGVSECIILGQTMSIGTGS-FKLVKSSNCEK 1428
Score = 61 (26.5 bits), Expect = 2.6e-36, Sum P(5) = 2.6e-36
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 496 LIKKSEVLKGDFDRDTI-PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSV 554
+I+ S++L G D+ T+ + + +I + GP+E + + L L GFS+
Sbjct: 648 VIRGSKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSI 707
Query: 555 SLED 558
+ D
Sbjct: 708 GIND 711
Score = 57 (25.1 bits), Expect = 1.8e-27, Sum P(5) = 1.8e-27
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 645 RGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGL 678
+G+ KTL+ED+A + E +Y +L Y + K L
Sbjct: 1150 KGRI-EKTLLEDVAFYIEDVYKDNLAYLSIKIDL 1182
Score = 44 (20.5 bits), Expect = 1.4e-34, Sum P(5) = 1.4e-34
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 489 DSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQ-PLLMENL 547
D D Y K E G + T+ + I +++ + E G + E DSL PL+M
Sbjct: 734 DQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCIREL-DSLNAPLIMATC 792
Query: 548 FADGFSVSL 556
+ G ++++
Sbjct: 793 GSKGSTLNV 801
Score = 40 (19.1 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 509 RDTIPSVI-NEIVTSIFFEKGPEEVLEFF-----DSLQPLLMENLFADGFSVSLEDFSLS 562
++T+ I +E + +F + PE LE F D L PL NLF E F L
Sbjct: 189 KETLEKTIWDEELDQVFI-RNPE--LEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLD 245
Query: 563 KA 564
A
Sbjct: 246 PA 247
Score = 37 (18.1 bits), Expect = 1.9e-25, Sum P(5) = 1.9e-25
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 830 ERAAYMVKNQLKRVSLKDAAVEFLIE--YK 857
E AA + K ++++ L+D A F IE YK
Sbjct: 1143 EIAARVAKGRIEKTLLEDVA--FYIEDVYK 1170
>UNIPROTKB|Q5ZL98 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 HOVERGEN:HBG004339
CTD:11128 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 EMBL:AJ719836 IPI:IPI00580235
RefSeq:NP_001006500.1 UniGene:Gga.11367 ProteinModelPortal:Q5ZL98
STRING:Q5ZL98 PRIDE:Q5ZL98 GeneID:423727 KEGG:gga:423727
InParanoid:Q5ZL98 NextBio:20826153 Uniprot:Q5ZL98
Length = 1390
Score = 339 (124.4 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 129/414 (31%), Positives = 187/414 (45%)
Query: 105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
G AQ L+ V + KRIP E L AGK P D IL L VPP C+
Sbjct: 212 GRAQENLNPLV-VLNLFKRIPAEDIPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266
Query: 160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
+SD S T DL++ L +++ ++I+ R SG E + + LQL Y+ E
Sbjct: 267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
+ G + G Q K + R K FS R+VI+ D R++E+
Sbjct: 325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
VP +A+ +TF E+VN NIN++++LV N + L+ G++
Sbjct: 381 AVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQRHTQMKRFLKYGNREKM 440
Query: 329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G +V R ++DGD V NR P+ HK S+ A V T + N +C P +ADF
Sbjct: 441 AQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADF 500
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLD 445
DGD ++L PQ+ AKAE L L + L++ NG + D L ++ K F D
Sbjct: 501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFD 560
Query: 446 KAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDSC 491
+A Q+ L LP PA+ K WT Q+ S+L P D C
Sbjct: 561 RAKACQIIASILVGKDEKIKVRLPPPAILKP--VTLWTGKQVFSSILKPS-DDC 611
Score = 122 (48.0 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 45/152 (29%), Positives = 69/152 (45%)
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HFE+ + P AK G + F+ GL P E H+++ RE +V ++ +E G + +
Sbjct: 820 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
L+ L D+ YD TVR+ + IIQF Y + ++ EP+ Y
Sbjct: 875 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYP 933
Query: 780 AVLDSSPSSNN----SWELMK--EILLCRVSF 805
+ + S N S +MK E L CR SF
Sbjct: 934 CRSEPALSKNELVLTSESIMKKNEFLCCRDSF 965
Score = 84 (34.6 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
CE+CG + C GH+GYI+L +P +H + F+ I G+ Q + +CC
Sbjct: 69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FKAVI---GILQMICKTCCR 114
Query: 117 V 117
+
Sbjct: 115 I 115
Score = 43 (20.2 bits), Expect = 4.8e-28, Sum P(3) = 4.8e-28
Identities = 38/171 (22%), Positives = 73/171 (42%)
Query: 663 RIYPMDLNYPTAKYGLIKGCFFH-GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
R+ +++N T +Y + C + P + H + V R + S + ++L
Sbjct: 1138 RLLRLEVNAETVRYSI---CISKLRVKPGDVAVHGEAVVCVTPREN-SKSSMYYVLQSLK 1193
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAV 781
L VV+ G + V S ++I D + ++ + L G+ + + AT V
Sbjct: 1194 EELPKVVV--QG-IPEV-SRAVIHIDEQ-SGKEKYKLLVEGDNLRAVMAT-------HGV 1241
Query: 782 LDSSPSSNNSWELMKEILL--CRVSFNND----------PIDRRVILYLND 820
+ SSNN++E+ K + + R + N+ IDRR ++ L+D
Sbjct: 1242 KGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSD 1292
>CGD|CAL0000919 [details] [associations]
symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 406 (148.0 bits), Expect = 3.6e-36, Sum P(4) = 3.6e-36
Identities = 137/499 (27%), Positives = 229/499 (45%)
Query: 103 NDGVAQRLLSSCCEVKEMLKRI-PEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS 161
ND +RLL+ E+ + K I PE+ K + Y + ++ LPVPP + P I+
Sbjct: 194 NDQPERRLLTPS-EILNVFKHISPEDCYKMGFNEDYARPEWMLITVLPVPPPPVR-PSIA 251
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTA 220
+ D L ++K + + R G+P E E+ LQ V Y++ A
Sbjct: 252 FNETARGEDDLTFKLADIIKANINVQRLETDGSPQHVISEFEAL-LQFHVATYMD-NDIA 309
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + + K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 310 GQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 369
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L ELV N D LR + G L+ G
Sbjct: 370 IAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 429
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 430 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNL 489
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS ++E+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 490 HVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YDQVM 547
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGDRY------- 495
M P +P PA+ K + WT Q+L +P G FD D
Sbjct: 548 NMCYWIPNWDGVIPPPAVVKPK--QLWTGKQLLSLAIPKGIHLQRFDGGRDLLSPKDTGM 605
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++ EKGP+ E F S+Q ++ L +GFS+
Sbjct: 606 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIG 665
Query: 556 LEDFSLSKAALWNIQKEIQ 574
+ D + ++ K IQ
Sbjct: 666 IGDTIADAQTMRDVNKTIQ 684
Score = 168 (64.2 bits), Expect = 3.6e-11, Sum P(4) = 3.6e-11
Identities = 62/270 (22%), Positives = 117/270 (43%)
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++ EKGP+ E F S+Q ++ L +GFS+
Sbjct: 606 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIG 665
Query: 556 LEDFSLSKAALWNIQKEIQA--------LYSLLYHRMS-----TQNELVDLQIE---NHI 599
+ D + ++ K IQ + ++++ T E + + N
Sbjct: 666 IGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRESFEHNVSRVLNQA 725
Query: 600 RHVKMLVAKFILKS-STLGYLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFYSKTLVEDIA 658
R A+ LK + + ++ +G Q+ + GK +
Sbjct: 726 RDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFGDRSL 784
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + D P +K G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 785 PHFTK----DDYSPESK-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 839
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
L+ L D+++ YDGT RN + IIQF Y
Sbjct: 840 RLVKALEDIMVHYDGTTRNSLGD-IIQFIY 868
Score = 101 (40.6 bits), Expect = 3.6e-36, Sum P(4) = 3.6e-36
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 17 IRFGLATQKEICTASIS--------DCSISHASQ--LANPFLG-LPLEFGKCESCGTSEP 65
++FGL + +E+ S++ D + + L +P LG + F +C++CG +
Sbjct: 18 VQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLGSIDRNF-RCQTCG-EDM 75
Query: 66 GKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H I+++K
Sbjct: 76 AECPGHFGHIELAKPVFHIGFIAKIK 101
Score = 50 (22.7 bits), Expect = 3.6e-36, Sum P(4) = 3.6e-36
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
S+ GE VGV+AA ++ PA + L++
Sbjct: 1057 SIVHPGEMVGVVAAQSIGEPATQMTLNT 1084
Score = 39 (18.8 bits), Expect = 3.6e-36, Sum P(4) = 3.6e-36
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 1548 PRSPGVVNDDSTVNAMYTVTRQRLD 1572
PR+ + +D TV A + + Q+++
Sbjct: 1159 PRTTVIEDDYDTVEAYFAIPDQKVE 1183
Score = 38 (18.4 bits), Expect = 4.6e-36, Sum P(4) = 4.6e-36
Identities = 31/102 (30%), Positives = 44/102 (43%)
Query: 1196 GAWGKSSDDK-LEKAGSPSRKPS----GWGTEASWGESSCDKWENVGSPAAKSFSEWG-- 1248
G++ DD+ L+KA S G T E++ D EN+ A FS
Sbjct: 1441 GSFDLMVDDRMLQKAPSSMAMDDIADGGGATPYKDYENARD--ENIDIDAGAGFSPIHIA 1498
Query: 1249 --TEASWG--KSFGDKPENVSPAAKT--SSGWGSEASWGKSS 1284
E + G S+G +P SPAA + S G+ S S G +S
Sbjct: 1499 QMNEGNIGGLTSYGGQP--TSPAATSPFSYGYNSITSPGYTS 1538
>UNIPROTKB|Q5ACI7 [details] [associations]
symbol:RPO21 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 406 (148.0 bits), Expect = 3.6e-36, Sum P(4) = 3.6e-36
Identities = 137/499 (27%), Positives = 229/499 (45%)
Query: 103 NDGVAQRLLSSCCEVKEMLKRI-PEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDIS 161
ND +RLL+ E+ + K I PE+ K + Y + ++ LPVPP + P I+
Sbjct: 194 NDQPERRLLTPS-EILNVFKHISPEDCYKMGFNEDYARPEWMLITVLPVPPPPVR-PSIA 251
Query: 162 DGVSTMSSDLSIAMLKKVLK-QVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTA 220
+ D L ++K + + R G+P E E+ LQ V Y++ A
Sbjct: 252 FNETARGEDDLTFKLADIIKANINVQRLETDGSPQHVISEFEAL-LQFHVATYMD-NDIA 309
Query: 221 KSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ + + + K ++R + K FS+R+VI+GD ++++GVP
Sbjct: 310 GQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPIS 369
Query: 281 IAQRITFEERVNVHNINYLQELVDNK------LCLTYSDGSSSYSLREGSK-GHTFLRPG 333
IA+ +T+ E V +NI+ L ELV N D LR + G L+ G
Sbjct: 370 IAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRAGDIALQYG 429
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHL 393
V R +MD D V NR P+ HK S+ A V V T ++N + P +ADFDGD ++L
Sbjct: 430 WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNL 489
Query: 394 FYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLDKAFTQQL 452
PQS ++E+ ++ +V Q++S + + + D L ++ M + F++ + Q +
Sbjct: 490 HVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIE--YDQVM 547
Query: 453 AMFALSP-----LPRPALSKARCSARWTALQILQSVLPPG-----FDSCGDRY------- 495
M P +P PA+ K + WT Q+L +P G FD D
Sbjct: 548 NMCYWIPNWDGVIPPPAVVKPK--QLWTGKQLLSLAIPKGIHLQRFDGGRDLLSPKDTGM 605
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++ EKGP+ E F S+Q ++ L +GFS+
Sbjct: 606 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIG 665
Query: 556 LEDFSLSKAALWNIQKEIQ 574
+ D + ++ K IQ
Sbjct: 666 IGDTIADAQTMRDVNKTIQ 684
Score = 168 (64.2 bits), Expect = 3.6e-11, Sum P(4) = 3.6e-11
Identities = 62/270 (22%), Positives = 117/270 (43%)
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVS 555
LI E++ G D+ T+ + ++ ++ EKGP+ E F S+Q ++ L +GFS+
Sbjct: 606 LIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIG 665
Query: 556 LEDFSLSKAALWNIQKEIQA--------LYSLLYHRMS-----TQNELVDLQIE---NHI 599
+ D + ++ K IQ + ++++ T E + + N
Sbjct: 666 IGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRESFEHNVSRVLNQA 725
Query: 600 RHVKMLVAKFILKS-STLGYLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFYSKTLVEDIA 658
R A+ LK + + ++ +G Q+ + GK +
Sbjct: 726 RDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVE-GKRIPFGFGDRSL 784
Query: 659 SHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK 718
HF + D P +K G ++ + GL P E H+++ RE ++ ++ +E G + +
Sbjct: 785 PHFTK----DDYSPESK-GFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 839
Query: 719 NLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
L+ L D+++ YDGT RN + IIQF Y
Sbjct: 840 RLVKALEDIMVHYDGTTRNSLGD-IIQFIY 868
Score = 101 (40.6 bits), Expect = 3.6e-36, Sum P(4) = 3.6e-36
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 17 IRFGLATQKEICTASIS--------DCSISHASQ--LANPFLG-LPLEFGKCESCGTSEP 65
++FGL + +E+ S++ D + + L +P LG + F +C++CG +
Sbjct: 18 VQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLGSIDRNF-RCQTCG-EDM 75
Query: 66 GKCEGHFGYIELPIPIYHPSHISELK 91
+C GHFG+IEL P++H I+++K
Sbjct: 76 AECPGHFGHIELAKPVFHIGFIAKIK 101
Score = 50 (22.7 bits), Expect = 3.6e-36, Sum P(4) = 3.6e-36
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
S+ GE VGV+AA ++ PA + L++
Sbjct: 1057 SIVHPGEMVGVVAAQSIGEPATQMTLNT 1084
Score = 39 (18.8 bits), Expect = 3.6e-36, Sum P(4) = 3.6e-36
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 1548 PRSPGVVNDDSTVNAMYTVTRQRLD 1572
PR+ + +D TV A + + Q+++
Sbjct: 1159 PRTTVIEDDYDTVEAYFAIPDQKVE 1183
Score = 38 (18.4 bits), Expect = 4.6e-36, Sum P(4) = 4.6e-36
Identities = 31/102 (30%), Positives = 44/102 (43%)
Query: 1196 GAWGKSSDDK-LEKAGSPSRKPS----GWGTEASWGESSCDKWENVGSPAAKSFSEWG-- 1248
G++ DD+ L+KA S G T E++ D EN+ A FS
Sbjct: 1441 GSFDLMVDDRMLQKAPSSMAMDDIADGGGATPYKDYENARD--ENIDIDAGAGFSPIHIA 1498
Query: 1249 --TEASWG--KSFGDKPENVSPAAKT--SSGWGSEASWGKSS 1284
E + G S+G +P SPAA + S G+ S S G +S
Sbjct: 1499 QMNEGNIGGLTSYGGQP--TSPAATSPFSYGYNSITSPGYTS 1538
>UNIPROTKB|F1NIK7 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045087
"innate immune response" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
IPI:IPI00580235 EMBL:AADN02027942 EMBL:AADN02027940
EMBL:AADN02027941 Ensembl:ENSGALT00000007929 Uniprot:F1NIK7
Length = 1390
Score = 333 (122.3 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 128/414 (30%), Positives = 186/414 (44%)
Query: 105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
G AQ L+ V + KRIP E L AGK P D IL L VPP C+
Sbjct: 212 GRAQENLNPLV-VLNLFKRIPAEDIPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266
Query: 160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
+SD S T DL++ L +++ ++I+ R SG E + + LQL Y+ E
Sbjct: 267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
+ G + G Q K + R K FS R+VI+ D R++E+
Sbjct: 325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
VP +A+ +TF E+VN NIN++++LV N + L+ G++
Sbjct: 381 AVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQRHTQMKRFLKYGNREKM 440
Query: 329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G +V R ++DGD V NR P+ HK S+ A V T + N +C P +ADF
Sbjct: 441 AQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADF 500
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLD 445
DGD ++L PQ+ AKAE L L + L++ NG + D L ++ K F D
Sbjct: 501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFD 560
Query: 446 KAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDSC 491
+A Q+ L LP PA+ K WT Q+ +L P D C
Sbjct: 561 RAKACQIIASILVGKDEKIKVRLPPPAILKP--VTLWTGKQVFSLILKPS-DDC 611
Score = 122 (48.0 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 45/152 (29%), Positives = 69/152 (45%)
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HFE+ + P AK G + F+ GL P E H+++ RE +V ++ +E G + +
Sbjct: 820 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
L+ L D+ YD TVR+ + IIQF Y + ++ EP+ Y
Sbjct: 875 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYP 933
Query: 780 AVLDSSPSSNN----SWELMK--EILLCRVSF 805
+ + S N S +MK E L CR SF
Sbjct: 934 CRSEPALSKNELVLTSESIMKKNEFLCCRDSF 965
Score = 84 (34.6 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
CE+CG + C GH+GYI+L +P +H + F+ I G+ Q + +CC
Sbjct: 69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FKAVI---GILQMICKTCCR 114
Query: 117 V 117
+
Sbjct: 115 I 115
Score = 43 (20.2 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 38/171 (22%), Positives = 73/171 (42%)
Query: 663 RIYPMDLNYPTAKYGLIKGCFFH-GLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLM 721
R+ +++N T +Y + C + P + H + V R + S + ++L
Sbjct: 1138 RLLRLEVNAETVRYSI---CISKLRVKPGDVAVHGEAVVCVTPREN-SKSSMYYVLQSLK 1193
Query: 722 AVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAV 781
L VV+ G + V S ++I D + ++ + L G+ + + AT V
Sbjct: 1194 EELPKVVV--QG-IPEV-SRAVIHIDEQ-SGKEKYKLLVEGDNLRAVMAT-------HGV 1241
Query: 782 LDSSPSSNNSWELMKEILL--CRVSFNND----------PIDRRVILYLND 820
+ SSNN++E+ K + + R + N+ IDRR ++ L+D
Sbjct: 1242 KGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSD 1292
>DICTYBASE|DDB_G0277199 [details] [associations]
symbol:rpc1 "RNA polymerase III, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0277199 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000019 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
KO:K03018 eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:XP_642724.1 ProteinModelPortal:Q86AQ5
STRING:Q86AQ5 EnsemblProtists:DDB0216293 GeneID:8620917
KEGG:ddi:DDB_G0277199 ProtClustDB:CLSZ2729139 Uniprot:Q86AQ5
Length = 1450
Score = 309 (113.8 bits), Expect = 2.8e-35, Sum P(4) = 2.8e-35
Identities = 114/367 (31%), Positives = 171/367 (46%)
Query: 144 ILEYLPVPPNCL--SVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEV 201
IL Y+ VPP + SVP + G T DL++ L ++L E IRS+ E
Sbjct: 245 ILTYMLVPPVSIRPSVP-MDGGSGTNEDDLTMK-LSEILHINEHIRSNVDRAEMSAIME- 301
Query: 202 ESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFS 259
+ + LQ + Y+ +V G + A G+SQ T + R K FS
Sbjct: 302 DWDYLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGKTG----RFRGNLSGKRVDFS 357
Query: 260 SRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYS 312
R+VI+ D ++E+ VP IA +T+ ERV +NI LQ+ V N + Y+
Sbjct: 358 GRTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPGANYIIYA 417
Query: 313 DGSSSYSLREGS--KGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDH 370
DG + L+ G+ K L+ G +V R I+DGD + NR P+ HK S+ + V
Sbjct: 418 DGVKKW-LKFGNREKFAAELKIGDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPWR 476
Query: 371 TVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATD 430
T++ N +C P +ADFDGD +++ PQ+ A+AE L V L++ NG L AT
Sbjct: 477 TLRFNECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNLITPRNGE-PLVAATQ 535
Query: 431 ALLSLKVMFKKY--FLDK-AFTQQLAMFALS----PLPRPALSKARCSARWTALQILQSV 483
L+ + + F ++ F FA + LP PA+ K WT QI + +
Sbjct: 536 DFLTASYLISRRDAFYERYRFALMCTHFADANEHIDLPPPAILKP--VELWTGKQIFEVL 593
Query: 484 LPPGFDS 490
L P S
Sbjct: 594 LRPSVKS 600
Score = 121 (47.7 bits), Expect = 2.8e-35, Sum P(4) = 2.8e-35
Identities = 51/196 (26%), Positives = 83/196 (42%)
Query: 672 PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
P +K G + F+ G+ P E H++ RE +V ++ +E G + + LM L D+ Y
Sbjct: 816 PKSK-GFVSNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHY 874
Query: 732 DGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNS 791
D TVR+ I+QF Y + + PV L A MS + + + P
Sbjct: 875 DYTVRDSIGG-IVQFIYGDDGLDPAGMEAKDRPVDFLRAM-MSVKSTRQCRNE-PEMK-P 930
Query: 792 WELMK--EILLCRVSFN--NDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKD 847
+E+ K E ++ F D + ++ N + Y QE + + +L L D
Sbjct: 931 FEIRKLVESIIDSSKFEACTDLFKNEIRVFFNGNEKTKGYIQELISLRKQFKLSSFDLND 990
Query: 848 AAVEFLIEYKKPEIIS 863
E +IE P IS
Sbjct: 991 NEDEIIIEDNSPMDIS 1006
Score = 89 (36.4 bits), Expect = 2.8e-35, Sum P(4) = 2.8e-35
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 48 LGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKN 103
LG + C +CG S C GHFGYI+L +P++H I LK M Q+ K+
Sbjct: 58 LGTSDKQAMCTTCGLSIVD-CVGHFGYIKLQLPVFH---IGYLKNIMNILQMICKS 109
Score = 68 (29.0 bits), Expect = 2.8e-35, Sum P(4) = 2.8e-35
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
H++LLA+ M+ G+++G G + S+ + F + T + F+ A R D++
Sbjct: 1356 HVMLLADLMSFKGEILGITRFGIAKMKESVLMLASFEKTTDHL----FDAAVHHRQ-DDI 1410
Query: 1057 SSVVAACSWGKHVAVGTGSRFDLL 1080
V G + +GTG F LL
Sbjct: 1411 VGVSECIIMGVVIPLGTGL-FKLL 1433
Score = 40 (19.1 bits), Expect = 2.0e-07, Sum P(4) = 2.0e-07
Identities = 29/112 (25%), Positives = 45/112 (40%)
Query: 181 KQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSS------RDVDARFGVSQ 234
K+ EII ++ F ++ ES LQL+ G +E AK + RD + V+
Sbjct: 700 KKREIIETAYKKCAVF-LKDYESGSLQLSSGCSMEQTFEAKMNQTLSQIRDDCGKLCVND 758
Query: 235 DPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
PN + + L KGS + +I + VN +P R T
Sbjct: 759 LPNYNSPL----IMGLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTT 806
>ZFIN|ZDB-GENE-050208-103 [details] [associations]
symbol:polr3a "polymerase (RNA) III (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
ZFIN:ZDB-GENE-050208-103 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
KO:K03018 GO:GO:0032549 GeneTree:ENSGT00700000104490
PANTHER:PTHR19376:SF15 EMBL:CABZ01084340 EMBL:CABZ01084341
EMBL:CABZ01084342 EMBL:CABZ01084343 EMBL:CABZ01084344
EMBL:CABZ01084345 EMBL:CABZ01084346 IPI:IPI00960980
RefSeq:XP_003199716.1 UniGene:Dr.109694 Ensembl:ENSDART00000105273
GeneID:572258 KEGG:dre:572258 NextBio:20890901 Bgee:E7F5P2
Uniprot:E7F5P2
Length = 1390
Score = 305 (112.4 bits), Expect = 1.0e-34, Sum P(5) = 1.0e-34
Identities = 122/430 (28%), Positives = 190/430 (44%)
Query: 94 MYAFQLQIKNDGVAQRLLSSCCE------VKEMLKRIPEETRKKL-----AGKGYFPQDG 142
+ +F + I+++ + LL+ E V + +RIP++ L +GK P D
Sbjct: 194 LQSFDVAIEHNKEVESLLTRAQENLNPLVVLNLFRRIPDKDVPLLLMNPESGK---PAD- 249
Query: 143 YILEYLPVPPNCLSVPDISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEV 201
IL L VPP C+ +SD S T DL++ L +++ ++I+ R +
Sbjct: 250 LILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRMTGAKTQMIME 308
Query: 202 ESNDLQLAVGQYL--EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFS 259
+ + LQL Y+ E+ G + G Q K + R K FS
Sbjct: 309 DWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFS 364
Query: 260 SRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYS 312
R+VI+ D R++E+ VP +A+ +T+ E+VN NI +++LV N +
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGANFIQQR 424
Query: 313 DGSSSYSLREGSKGHTF--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDH 370
L+ G++ L+ G VV R ++DGD V NR P+ HK S+ A V
Sbjct: 425 HMQMKRFLKYGNREKMAQELKFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARVKPHR 484
Query: 371 TVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATD 430
T + N +C P +ADFDGD ++L PQ+ AKAE L L + L++ NG + D
Sbjct: 485 TFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQD 544
Query: 431 ALLSLKVM-FKKYFLDKAFTQQLAMFALS--------PLPRPALSKARCSARWTALQILQ 481
L ++ K F D+ Q+ L LP PA+ K WT QI
Sbjct: 545 FLTGAYLLTLKDTFFDRTKACQIVASILVGKDEKIKISLPHPAILKP--IRLWTGKQIFS 602
Query: 482 SVLPPGFDSC 491
+L P SC
Sbjct: 603 LILKPS-KSC 611
Score = 110 (43.8 bits), Expect = 1.0e-34, Sum P(5) = 1.0e-34
Identities = 39/140 (27%), Positives = 64/140 (45%)
Query: 672 PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
P AK G + F+ GL P E H+++ RE +V ++ +E G + + L+ L D+ Y
Sbjct: 828 PAAK-GFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQY 886
Query: 732 DGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNN- 790
D TVR+ + IIQF Y + ++ EP+ Y + + S N
Sbjct: 887 DLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYSCTGEPALSRNEL 945
Query: 791 ---SWELMK--EILLCRVSF 805
S +MK + L C+ +F
Sbjct: 946 LLTSDSIMKRKDFLCCKDTF 965
Score = 79 (32.9 bits), Expect = 1.0e-34, Sum P(5) = 1.0e-34
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 57 CESCGTSEPGKCEGHFGYIELPIPIYH 83
CE+CG + C GH+GY++L +P +H
Sbjct: 69 CETCGKNL-ADCLGHYGYLDLELPCFH 94
Score = 67 (28.6 bits), Expect = 1.0e-34, Sum P(5) = 1.0e-34
Identities = 27/102 (26%), Positives = 48/102 (47%)
Query: 987 TMVAKGVL--KEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCF 1044
TMV G+ + H++LLA+ M+ G+++G G + S+ + F + + F
Sbjct: 1274 TMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHL----F 1329
Query: 1045 EKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENE 1086
+ AA D++ V G + +GTG F LL ++ E
Sbjct: 1330 D-AAYFGQKDSVCGVSECIIMGIPMNIGTGL-FKLLHRSNRE 1369
Score = 66 (28.3 bits), Expect = 1.0e-34, Sum P(5) = 1.0e-34
Identities = 26/94 (27%), Positives = 42/94 (44%)
Query: 487 GFDSCG-DRYL-IKKSEVLKGDFDRDTIPSVI-NEIVTSIFFEKGPEEVLEFFDSLQPLL 543
G D C D ++ I SE++ G D+ T+ S N I + + G +E + L L
Sbjct: 628 GEDLCANDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQQEAADAMSRLARLA 687
Query: 544 MENLFADGFSVSLEDFSLSKAALWNIQKEIQALY 577
L GFS+ + D + + L Q+ + A Y
Sbjct: 688 PVYLSNRGFSIGIGDVTPGQGLLKAKQELLDAGY 721
Score = 40 (19.1 bits), Expect = 1.3e-27, Sum P(5) = 1.3e-27
Identities = 27/137 (19%), Positives = 59/137 (43%)
Query: 663 RIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMA 722
R+ +++N T +Y + + P + H E +V S + +++ L +
Sbjct: 1138 RLLRLEVNAETVRYSICTSKL--RVKPGDVQVHG----EAVVCVSPRENSKSSMYYVLQS 1191
Query: 723 VLRDVV-ICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAV 781
+ +D+ + G + V S ++I D + ++ L G+ + + AT V
Sbjct: 1192 LKQDLPKVVVQG-IPEV-SRAVIHIDEQ-SGKQKFKLLVEGDNMRSVMAT-------HGV 1241
Query: 782 LDSSPSSNNSWELMKEI 798
S +SNN++E+ K +
Sbjct: 1242 NGSKTTSNNTYEVEKTL 1258
Score = 38 (18.4 bits), Expect = 2.1e-27, Sum P(5) = 2.1e-27
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 645 RGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGL 678
+G+ KTL+ +I+ + E ++ D + K L
Sbjct: 1102 KGRI-EKTLLGEISEYIEEVFLPDDTFILVKLSL 1134
>UNIPROTKB|J9P629 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 CTD:11128 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:AAEX03002853 RefSeq:XP_536399.2
Ensembl:ENSCAFT00000047369 GeneID:479256 KEGG:cfa:479256
Uniprot:J9P629
Length = 1390
Score = 330 (121.2 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 128/413 (30%), Positives = 185/413 (44%)
Query: 105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
G AQ L+ V + KRIP E L AGK P D IL L VPP C+
Sbjct: 212 GRAQENLNPLV-VLNLFKRIPAEDVPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266
Query: 160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
+SD S T DL++ L +++ ++I+ R SG E + + LQL Y+ E
Sbjct: 267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
+ G + G Q K + R K FS R+VI+ D R++E+
Sbjct: 325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
VP +A+ +TF E+VN NIN+L++LV N + L+ G++
Sbjct: 381 AVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRHTQMKRFLKYGNREKM 440
Query: 329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G +V R ++DGD V NR P+ HK S+ A V T + N +C P +ADF
Sbjct: 441 AQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFRFNECVCTPYNADF 500
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLD 445
DGD ++L PQ+ AKAE L L + L++ NG + D L ++ K F D
Sbjct: 501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFD 560
Query: 446 KAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDS 490
+A Q+ L LP P + K WT QI +L P D+
Sbjct: 561 RAKACQIIASILVGKDEKIKVHLPPPTILKP--VTLWTGKQIFSVILRPSDDN 611
Score = 115 (45.5 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 44/149 (29%), Positives = 70/149 (46%)
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HFE+ + P AK G + F+ GL P E H+++ RE +V ++ +E G + +
Sbjct: 820 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
L+ L D+ YD TVR+ + IIQF Y + ++ EP+ + N K
Sbjct: 875 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEF--KRVLDN--IK 929
Query: 780 AVL--DSSPS-SNNSWELMKEILLCRVSF 805
AV S P+ S N L E ++ + F
Sbjct: 930 AVFPCQSEPALSKNELVLTTESIMKKTEF 958
Score = 84 (34.6 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
CE+CG + C GH+GYI+L +P +H + F+ I G+ Q + +CC
Sbjct: 69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FRAVI---GILQMICKTCCH 114
Query: 117 V 117
+
Sbjct: 115 I 115
>UNIPROTKB|O14802 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0045087 "innate immune response" evidence=IMP]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:CH471083 GO:GO:0045087 GO:GO:0051607 Gene3D:2.40.40.20
InterPro:IPR009010 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
GO:GO:0032728 KO:K03018 GO:GO:0006386 GO:GO:0006385 eggNOG:COG0086
GO:GO:0032549 HOVERGEN:HBG004339 CTD:11128 HOGENOM:HOG000222974
OMA:PRRPLIF OrthoDB:EOG4QVCB4 PANTHER:PTHR19376:SF15 EMBL:AF021351
EMBL:AL512628 EMBL:BC041089 EMBL:AY091459 IPI:IPI00024163
RefSeq:NP_008986.2 UniGene:Hs.436896 ProteinModelPortal:O14802
SMR:O14802 IntAct:O14802 STRING:O14802 PhosphoSite:O14802
PaxDb:O14802 PRIDE:O14802 Ensembl:ENST00000372371 GeneID:11128
KEGG:hsa:11128 UCSC:uc001jzn.3 GeneCards:GC10M079729
HGNC:HGNC:30074 HPA:HPA037926 MIM:607694 MIM:614258
neXtProt:NX_O14802 Orphanet:88637 Orphanet:77295
PharmGKB:PA134900426 InParanoid:O14802 PhylomeDB:O14802
ChiTaRS:POLR3A GenomeRNAi:11128 NextBio:42292 ArrayExpress:O14802
Bgee:O14802 CleanEx:HS_POLR3A Genevestigator:O14802
GermOnline:ENSG00000148606 Uniprot:O14802
Length = 1390
Score = 332 (121.9 bits), Expect = 1.9e-34, Sum P(3) = 1.9e-34
Identities = 128/413 (30%), Positives = 185/413 (44%)
Query: 105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
G AQ L+ V + KRIP E L AGK P D IL L VPP C+
Sbjct: 212 GRAQENLNPLV-VLNLFKRIPAEDVPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266
Query: 160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
+SD S T DL++ L +++ ++I+ R SG E + + LQL Y+ E
Sbjct: 267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
+ G + G Q K + R K FS R+VI+ D R++E+
Sbjct: 325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
VP +A+ +TF E+VN NIN+L++LV N + L+ G++
Sbjct: 381 AVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRHTQMKRFLKYGNREKM 440
Query: 329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G +V R ++DGD V NR P+ HK S+ A V T + N +C P +ADF
Sbjct: 441 AQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADF 500
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLD 445
DGD ++L PQ+ AKAE L L + L++ NG + D L ++ K F D
Sbjct: 501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFD 560
Query: 446 KAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDS 490
+A Q+ L LP P + K WT QI +L P D+
Sbjct: 561 RAKACQIIASILVGKDEKIKVRLPPPTILKP--VTLWTGKQIFSVILRPSDDN 611
Score = 112 (44.5 bits), Expect = 1.9e-34, Sum P(3) = 1.9e-34
Identities = 42/152 (27%), Positives = 69/152 (45%)
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HFE+ + P AK G + F+ GL P E H+++ RE +V ++ +E G + +
Sbjct: 820 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
L+ L D+ YD TVR+ + IIQF Y + ++ EP+ +
Sbjct: 875 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFP 933
Query: 780 AVLDSSPSSNN----SWELMK--EILLCRVSF 805
+ + S N + +MK E L C+ SF
Sbjct: 934 CPSEPALSKNELILTTESIMKKSEFLCCQDSF 965
Score = 84 (34.6 bits), Expect = 1.9e-34, Sum P(3) = 1.9e-34
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
CE+CG + C GH+GYI+L +P +H + F+ I G+ Q + +CC
Sbjct: 69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FRAVI---GILQMICKTCCH 114
Query: 117 V 117
+
Sbjct: 115 I 115
>UNIPROTKB|E9PTB6 [details] [associations]
symbol:Polr3a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0032728
"positive regulation of interferon-beta production" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
IPI:IPI00766228 PRIDE:E9PTB6 Ensembl:ENSRNOT00000013501
Uniprot:E9PTB6
Length = 1342
Score = 328 (120.5 bits), Expect = 2.1e-34, Sum P(3) = 2.1e-34
Identities = 128/413 (30%), Positives = 185/413 (44%)
Query: 105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
G AQ L+ V + KRIP E L AGK P D IL L VPP C+
Sbjct: 212 GRAQENLNPLV-VLNLFKRIPAEDVPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266
Query: 160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
+SD S T DL++ L +++ ++I+ R SG E + + LQL Y+ E
Sbjct: 267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
+ G + G Q K + R K FS R+VI+ D R++E+
Sbjct: 325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
VP +A+ +TF E+VN NIN+L++LV N + L+ G++
Sbjct: 381 AVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRHMQMKRFLKYGNREKM 440
Query: 329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G +V R ++DGD V NR P+ HK S+ A V T + N +C P +ADF
Sbjct: 441 AQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFRFNECVCTPYNADF 500
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLD 445
DGD ++L PQ+ AKAE L L + L++ NG + D L ++ K F D
Sbjct: 501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFD 560
Query: 446 KAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDS 490
+A Q+ L LP P + K WT QI +L P D+
Sbjct: 561 RAKACQIIASILVGKDEKIKVRLPPPTILKP--VTLWTGKQIFSVILRPSDDN 611
Score = 115 (45.5 bits), Expect = 2.1e-34, Sum P(3) = 2.1e-34
Identities = 43/152 (28%), Positives = 69/152 (45%)
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HFE+ + P AK G + F+ GL P E H+++ RE +V ++ +E G + +
Sbjct: 820 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
L+ L D+ YD TVR+ + IIQF Y + ++ EP+ Y
Sbjct: 875 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVYP 933
Query: 780 AVLDSSPSSNN----SWELMK--EILLCRVSF 805
+ + S N + +MK E L C+ SF
Sbjct: 934 CQSERALSKNELTLTTEAIMKKNEFLCCQDSF 965
Score = 84 (34.6 bits), Expect = 2.1e-34, Sum P(3) = 2.1e-34
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
CE+CG + C GH+GYI+L +P +H + F+ I G+ Q + +CC
Sbjct: 69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FRAVI---GILQMICKTCCH 114
Query: 117 V 117
+
Sbjct: 115 I 115
>UNIPROTKB|A4IF62 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9913 "Bos taurus" [GO:0045087 "innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0032728 KO:K03018 eggNOG:COG0086 GO:GO:0032549
GeneTree:ENSGT00700000104490 HOVERGEN:HBG004339 EMBL:BC134422
IPI:IPI00701819 RefSeq:NP_001077219.1 UniGene:Bt.58772
ProteinModelPortal:A4IF62 STRING:A4IF62 PRIDE:A4IF62
Ensembl:ENSBTAT00000017638 GeneID:540308 KEGG:bta:540308 CTD:11128
HOGENOM:HOG000222974 InParanoid:A4IF62 OMA:PRRPLIF
OrthoDB:EOG4QVCB4 NextBio:20878554 ArrayExpress:A4IF62
PANTHER:PTHR19376:SF15 Uniprot:A4IF62
Length = 1390
Score = 330 (121.2 bits), Expect = 3.1e-34, Sum P(3) = 3.1e-34
Identities = 128/413 (30%), Positives = 185/413 (44%)
Query: 105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
G AQ L+ V + KRIP E L AGK P D IL L VPP C+
Sbjct: 212 GKAQENLNPLV-VLNLFKRIPAEDIPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266
Query: 160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
+SD S T DL++ L +++ ++I+ R SG E + + LQL Y+ E
Sbjct: 267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
+ G + G Q K + R K FS R+VI+ D R++E+
Sbjct: 325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
VP +A+ +TF E+VN NIN+L++LV N + L+ G++
Sbjct: 381 AVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRHTQMKRFLKYGNREKM 440
Query: 329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G +V R ++DGD V NR P+ HK S+ A V T + N +C P +ADF
Sbjct: 441 AQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADF 500
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLD 445
DGD ++L PQ+ AKAE L L + L++ NG + D L ++ K F D
Sbjct: 501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFD 560
Query: 446 KAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDS 490
+A Q+ L LP P + K WT QI +L P D+
Sbjct: 561 RAKACQIIASILVGKDEKIKVRLPPPTILKP--VTLWTGKQIFSVILRPSDDN 611
Score = 112 (44.5 bits), Expect = 3.1e-34, Sum P(3) = 3.1e-34
Identities = 44/152 (28%), Positives = 70/152 (46%)
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HFE+ + P AK G + F+ GL P E H+++ RE +V ++ +E G + +
Sbjct: 820 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
L+ L D+ YD TVR+ + IIQF Y + ++ EP+ +
Sbjct: 875 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFP 933
Query: 780 AVLDSSPSSNN---SWE-LMK--EILLCRVSF 805
+ + S N S E +MK E L C+ SF
Sbjct: 934 CRSEPALSKNELLLSAESIMKKNEFLCCQDSF 965
Score = 84 (34.6 bits), Expect = 3.1e-34, Sum P(3) = 3.1e-34
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
CE+CG + C GH+GYI+L +P +H + F+ I G+ Q + +CC
Sbjct: 69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FRAVI---GILQMICKTCCH 114
Query: 117 V 117
+
Sbjct: 115 I 115
>UNIPROTKB|F1S2E6 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:CU407090 RefSeq:XP_001929395.1 Ensembl:ENSSSCT00000011305
GeneID:100156229 KEGG:ssc:100156229 Uniprot:F1S2E6
Length = 1390
Score = 328 (120.5 bits), Expect = 5.1e-34, Sum P(3) = 5.1e-34
Identities = 126/413 (30%), Positives = 185/413 (44%)
Query: 105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
G AQ L+ V + KRIP E L AGK P D IL L VPP C+
Sbjct: 212 GRAQENLNPLV-VLNLFKRIPAEDIPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266
Query: 160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
+SD S T DL++ L +++ ++I+ R SG E + + LQL Y+ E
Sbjct: 267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
+ G + G Q K + R K FS R+VI+ D R++E+
Sbjct: 325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
VP +A+ +TF E+VN NI +L++LV N + L+ G++
Sbjct: 381 AVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPGANFIQQRHTQMKRFLKYGNREKM 440
Query: 329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G +V R ++DGD V NR P+ HK S+ A V T + N +C P +ADF
Sbjct: 441 AQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADF 500
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVM-FKKYFLD 445
DGD ++L PQ+ AKAE L L + L++ NG + D L ++ K F D
Sbjct: 501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFD 560
Query: 446 KAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDS 490
+A Q+ L LP P + K WT Q+ +L P +D+
Sbjct: 561 RAKACQIIASILVGKDEKIKVRLPPPTILKP--VTLWTGKQVFSVILRPSYDN 611
Score = 112 (44.5 bits), Expect = 5.1e-34, Sum P(3) = 5.1e-34
Identities = 42/152 (27%), Positives = 69/152 (45%)
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HFE+ + P AK G + F+ GL P E H+++ RE +V ++ +E G + +
Sbjct: 820 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 874
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
L+ L D+ YD TVR+ + IIQF Y + ++ EP+ +
Sbjct: 875 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFP 933
Query: 780 AVLDSSPSSNN----SWELMK--EILLCRVSF 805
+ + S N + +MK E L C+ SF
Sbjct: 934 CQSEPALSKNELLLTTESIMKKNEFLCCQDSF 965
Score = 84 (34.6 bits), Expect = 5.1e-34, Sum P(3) = 5.1e-34
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
CE+CG + C GH+GYI+L +P +H + F+ I G+ Q + +CC
Sbjct: 69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FRAVI---GILQMICKTCCH 114
Query: 117 V 117
+
Sbjct: 115 I 115
>UNIPROTKB|E2QXD8 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
EMBL:AAEX03002853 Ensembl:ENSCAFT00000024699 Uniprot:E2QXD8
Length = 1376
Score = 323 (118.8 bits), Expect = 8.1e-34, Sum P(3) = 8.1e-34
Identities = 128/416 (30%), Positives = 185/416 (44%)
Query: 105 GVAQRLLSSCCEVKEMLKRIPEETRKKL-----AGKGYFPQDGYILEYLPVPPNCLSVPD 159
G AQ L+ V + KRIP E L AGK P D IL L VPP C+
Sbjct: 212 GRAQENLNPLV-VLNLFKRIPAEDVPLLLMNPEAGK---PSD-LILTRLLVPPLCIRPSV 266
Query: 160 ISDGVS-TMSSDLSIAMLKKVLKQVEIIRSSR-SGTPNFESQEVESNDLQLAVGQYL--E 215
+SD S T DL++ L +++ ++I+ R SG E + + LQL Y+ E
Sbjct: 267 VSDLKSGTNEDDLTMK-LTEIIFLNDVIKKHRISGAKTQMIME-DWDFLQLQCALYINSE 324
Query: 216 VRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEI 275
+ G + G Q K + R K FS R+VI+ D R++E+
Sbjct: 325 LSGIPLNMAPKKWTRGFVQ----RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEV 380
Query: 276 GVPFEIAQRITFEERVNVHNINYLQELVDN-------KLCLTYSDGSSSYSLREGSKGHT 328
VP +A+ +TF E+VN NIN+L++LV N + L+ G++
Sbjct: 381 AVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRHTQMKRFLKYGNREKM 440
Query: 329 F--LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADF 386
L+ G +V R ++DGD V NR P+ HK S+ A V T + N +C P +ADF
Sbjct: 441 AQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFRFNECVCTPYNADF 500
Query: 387 DGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLK----VMFKKY 442
DGD ++L PQ+ AKAE L L + L++ NG + D L + + K
Sbjct: 501 DGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTAFVGAYLLTLKDT 560
Query: 443 FLDKAFTQQLAMFALSP--------LPRPALSKARCSARWTALQILQSVLPPGFDS 490
F D+A Q+ L LP P + K WT QI +L P D+
Sbjct: 561 FFDRAKACQIIASILVGKDEKIKVHLPPPTILKP--VTLWTGKQIFSVILRPSDDN 614
Score = 115 (45.5 bits), Expect = 8.1e-34, Sum P(3) = 8.1e-34
Identities = 44/149 (29%), Positives = 70/149 (46%)
Query: 660 HFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKN 719
HFE+ + P AK G + F+ GL P E H+++ RE +V ++ +E G + +
Sbjct: 823 HFEKHSKL----PAAK-GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRR 877
Query: 720 LMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYK 779
L+ L D+ YD TVR+ + IIQF Y + ++ EP+ + N K
Sbjct: 878 LVKSLEDLCSQYDLTVRS-STGDIIQFIYGGDGLDPAAMEGKDEPLEF--KRVLDN--IK 932
Query: 780 AVL--DSSPS-SNNSWELMKEILLCRVSF 805
AV S P+ S N L E ++ + F
Sbjct: 933 AVFPCQSEPALSKNELVLTTESIMKKTEF 961
Score = 84 (34.6 bits), Expect = 8.1e-34, Sum P(3) = 8.1e-34
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCE 116
CE+CG + C GH+GYI+L +P +H + F+ I G+ Q + +CC
Sbjct: 69 CETCGKNL-ADCLGHYGYIDLELPCFHVGY----------FRAVI---GILQMICKTCCH 114
Query: 117 V 117
+
Sbjct: 115 I 115
>WB|WBGene00000123 [details] [associations]
symbol:ama-1 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
[GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] [GO:0006479 "protein
methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
Length = 1856
Score = 331 (121.6 bits), Expect = 4.8e-29, Sum P(4) = 4.8e-29
Identities = 112/424 (26%), Positives = 204/424 (48%)
Query: 82 YHPSHISELKLTMYA-FQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ 140
Y PS+ + + + A ++ + D ++++ + V E+ ++I +E + F +
Sbjct: 180 YQPSY-RRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFAR 238
Query: 141 DGYIL-EYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQ 199
+++ LPVPP + ++ G + DL+ L ++K + ++ + + N +
Sbjct: 239 PEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLT-HKLSDIIKTNQQLQRNEA---NGAAA 294
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
V ++D++L + + G P + K L+ ++R + K
Sbjct: 295 HVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGR--PLKSIKQRLKGKEGRIRGNLMGKR 352
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGS 315
FS+R+VIT D ++ +GVP IAQ +TF E V N++ LQELV N+ Y
Sbjct: 353 VDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELV-NRGDTQYP--G 409
Query: 316 SSYSLRE-GSK---------GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
+ Y +RE G++ L+PG V R + DGD + NR PT HK S+ V
Sbjct: 410 AKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVK 469
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
+ T ++N + P +ADFDGD ++L PQSL +AE+ E+ V +QL++ +
Sbjct: 470 ILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVM 529
Query: 426 QLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQ 481
+ D L ++++M K+ F+D F L M+ + +P+PA+ K + WT Q+
Sbjct: 530 GIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPK--PLWTGKQVFS 587
Query: 482 SVLP 485
++P
Sbjct: 588 LIIP 591
Score = 104 (41.7 bits), Expect = 4.8e-29, Sum P(4) = 4.8e-29
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 672 PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
P +K G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V++ Y
Sbjct: 811 PESK-GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNY 869
Query: 732 DGTVRNVCSNSIIQFDY 748
DGTVRN + ++Q Y
Sbjct: 870 DGTVRNSLAQ-MVQLRY 885
Score = 87 (35.7 bits), Expect = 0.00058, Sum P(4) = 0.00058
Identities = 34/129 (26%), Positives = 61/129 (47%)
Query: 17 IRFGLATQKEICTASISDCSISHASQLANPFLGLPLE--------FGKCESCGTSEPGKC 68
++FG+ +EI S++ + P LG ++ G+C +C + C
Sbjct: 18 VQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLTD-C 76
Query: 69 EGHFGYIELPIPIYHPSHISE-LKLT----MYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
GHFG++EL P++H +++ LK+ Y +L I D A R+L E+LK+
Sbjct: 77 PGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLI--DKSAPRVL-------EILKK 127
Query: 124 IPEETRKKL 132
++K+L
Sbjct: 128 TGTNSKKRL 136
Score = 68 (29.0 bits), Expect = 2.3e-25, Sum P(4) = 2.3e-25
Identities = 24/95 (25%), Positives = 46/95 (48%)
Query: 697 ISTREVIVRSSRGLSEPGTLFKNL-MAVLRDVVICYDGTVRNVCSNSIIQ---FDYA--- 749
+S + +IV + +S+ L M +L +C +N+C+ S + FD+
Sbjct: 1010 LSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLC----TKNMCTKSKLNSEAFDWLLGE 1065
Query: 750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
+ +R ++ GE VG LAA ++ PA + L++
Sbjct: 1066 IESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 1100
Score = 57 (25.1 bits), Expect = 4.8e-29, Sum P(4) = 4.8e-29
Identities = 33/152 (21%), Positives = 59/152 (38%)
Query: 943 VLRGASDSYLDKLSGVLANM--IYPVL-LETIIKENWWVRQRLSASVTMVAKGVLKEHLI 999
+LR S+ +D + ++ I+ VL +E + K + + + ++ V HL
Sbjct: 1335 LLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKA---IEREMDNVISFDGSYVNYRHLA 1391
Query: 1000 LLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSV 1059
LL + MT G L+ G ++ F E + +AA D + V
Sbjct: 1392 LLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILM-----EAAVHAEEDPVKGV 1446
Query: 1060 VAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
G+ GTG FDL+ E ++ +
Sbjct: 1447 SENIMLGQLARCGTGC-FDLVLDVEKCKYGME 1477
Score = 39 (18.8 bits), Expect = 4.8e-29, Sum P(4) = 4.8e-29
Identities = 17/81 (20%), Positives = 28/81 (34%)
Query: 1179 EKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGS 1238
EK +E P + G +G + + SP+ P G ++ ++ S
Sbjct: 1470 EKCKYGMEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMS 1529
Query: 1239 PAAKSFSEWGTEASWGKSFGD 1259
P A FS G F +
Sbjct: 1530 PGA-GFSPAGNTDGGASPFNE 1549
>UNIPROTKB|P16356 [details] [associations]
symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
Uniprot:P16356
Length = 1856
Score = 331 (121.6 bits), Expect = 4.8e-29, Sum P(4) = 4.8e-29
Identities = 112/424 (26%), Positives = 204/424 (48%)
Query: 82 YHPSHISELKLTMYA-FQLQIKNDGVAQRLLSSCCEVKEMLKRIPEETRKKLAGKGYFPQ 140
Y PS+ + + + A ++ + D ++++ + V E+ ++I +E + F +
Sbjct: 180 YQPSY-RRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFAR 238
Query: 141 DGYIL-EYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQ 199
+++ LPVPP + ++ G + DL+ L ++K + ++ + + N +
Sbjct: 239 PEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLT-HKLSDIIKTNQQLQRNEA---NGAAA 294
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIRKG 255
V ++D++L + + G P + K L+ ++R + K
Sbjct: 295 HVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGR--PLKSIKQRLKGKEGRIRGNLMGKR 352
Query: 256 SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDGS 315
FS+R+VIT D ++ +GVP IAQ +TF E V N++ LQELV N+ Y
Sbjct: 353 VDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELV-NRGDTQYP--G 409
Query: 316 SSYSLRE-GSK---------GHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
+ Y +RE G++ L+PG V R + DGD + NR PT HK S+ V
Sbjct: 410 AKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVK 469
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
+ T ++N + P +ADFDGD ++L PQSL +AE+ E+ V +QL++ +
Sbjct: 470 ILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVM 529
Query: 426 QLATDALLSLKVMFKK-YFLDKAFTQQLAMFALS---PLPRPALSKARCSARWTALQILQ 481
+ D L ++++M K+ F+D F L M+ + +P+PA+ K + WT Q+
Sbjct: 530 GIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPK--PLWTGKQVFS 587
Query: 482 SVLP 485
++P
Sbjct: 588 LIIP 591
Score = 104 (41.7 bits), Expect = 4.8e-29, Sum P(4) = 4.8e-29
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 672 PTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICY 731
P +K G ++ + GL P E H++ RE ++ ++ +E G + + L+ + V++ Y
Sbjct: 811 PESK-GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNY 869
Query: 732 DGTVRNVCSNSIIQFDY 748
DGTVRN + ++Q Y
Sbjct: 870 DGTVRNSLAQ-MVQLRY 885
Score = 87 (35.7 bits), Expect = 0.00058, Sum P(4) = 0.00058
Identities = 34/129 (26%), Positives = 61/129 (47%)
Query: 17 IRFGLATQKEICTASISDCSISHASQLANPFLGLPLE--------FGKCESCGTSEPGKC 68
++FG+ +EI S++ + P LG ++ G+C +C + C
Sbjct: 18 VQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLTD-C 76
Query: 69 EGHFGYIELPIPIYHPSHISE-LKLT----MYAFQLQIKNDGVAQRLLSSCCEVKEMLKR 123
GHFG++EL P++H +++ LK+ Y +L I D A R+L E+LK+
Sbjct: 77 PGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLI--DKSAPRVL-------EILKK 127
Query: 124 IPEETRKKL 132
++K+L
Sbjct: 128 TGTNSKKRL 136
Score = 68 (29.0 bits), Expect = 2.3e-25, Sum P(4) = 2.3e-25
Identities = 24/95 (25%), Positives = 46/95 (48%)
Query: 697 ISTREVIVRSSRGLSEPGTLFKNL-MAVLRDVVICYDGTVRNVCSNSIIQ---FDYA--- 749
+S + +IV + +S+ L M +L +C +N+C+ S + FD+
Sbjct: 1010 LSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLC----TKNMCTKSKLNSEAFDWLLGE 1065
Query: 750 VNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
+ +R ++ GE VG LAA ++ PA + L++
Sbjct: 1066 IESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 1100
Score = 57 (25.1 bits), Expect = 4.8e-29, Sum P(4) = 4.8e-29
Identities = 33/152 (21%), Positives = 59/152 (38%)
Query: 943 VLRGASDSYLDKLSGVLANM--IYPVL-LETIIKENWWVRQRLSASVTMVAKGVLKEHLI 999
+LR S+ +D + ++ I+ VL +E + K + + + ++ V HL
Sbjct: 1335 LLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKA---IEREMDNVISFDGSYVNYRHLA 1391
Query: 1000 LLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSV 1059
LL + MT G L+ G ++ F E + +AA D + V
Sbjct: 1392 LLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILM-----EAAVHAEEDPVKGV 1446
Query: 1060 VAACSWGKHVAVGTGSRFDLLWQTENEEFNQD 1091
G+ GTG FDL+ E ++ +
Sbjct: 1447 SENIMLGQLARCGTGC-FDLVLDVEKCKYGME 1477
Score = 39 (18.8 bits), Expect = 4.8e-29, Sum P(4) = 4.8e-29
Identities = 17/81 (20%), Positives = 28/81 (34%)
Query: 1179 EKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGS 1238
EK +E P + G +G + + SP+ P G ++ ++ S
Sbjct: 1470 EKCKYGMEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMS 1529
Query: 1239 PAAKSFSEWGTEASWGKSFGD 1259
P A FS G F +
Sbjct: 1530 PGA-GFSPAGNTDGGASPFNE 1549
>UNIPROTKB|G4NBX7 [details] [associations]
symbol:MGG_01158 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
EMBL:CM001235 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0043581 GO:GO:0003899
KO:K02999 PANTHER:PTHR19376:SF11 RefSeq:XP_003717763.1
ProteinModelPortal:G4NBX7 EnsemblFungi:MGG_01158T0 GeneID:2675173
KEGG:mgr:MGG_01158 Uniprot:G4NBX7
Length = 1719
Score = 213 (80.0 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 61/182 (33%), Positives = 95/182 (52%)
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIHLF 394
VHR I +GD V +NR PT HK S+ V V + T++++ C +ADFDGD +++
Sbjct: 593 VHRHISNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMH 652
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDAL-LSLKVMFKKYFLDKAFTQQLA 453
+PQ+ A+ E L+L + Q +S G L D L +S+ + K +LD++ +L
Sbjct: 653 FPQNEVARTEALQLADTDHQYISGTQGKPLRGLIQDHLSVSVALCNKDTYLDRSAYHELV 712
Query: 454 MFALSP-----------LPRPALSKARCSARWTALQILQSVLPP--GFDSCGDRYLIKKS 500
AL P L PA+ K + ARWT Q++ +VL D CGD ++ K+
Sbjct: 713 YNALRPESGHILRERIELVPPAIIKPK--ARWTGKQVITTVLRNIRPLD-CGDLWMTGKT 769
Query: 501 EV 502
+V
Sbjct: 770 QV 771
Score = 116 (45.9 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 46/172 (26%), Positives = 77/172 (44%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMS----SDLSIAMLKKVLKQVEIIRSSRSGTPNFES 198
+ ++ L VPPN P+ G S ++ + L A+LK K +I R ++ T
Sbjct: 371 FFVQTLLVPPNRFR-PEARTGDSQINEAQQNSLYKAILKASTKLTQIFRDLQNPTSLLSQ 429
Query: 199 QE-VESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG 257
+ ++ L A + + T + + ++ K LEK LF + G
Sbjct: 430 RHGKDTTILHEAWTELQDCVNTLIDNTKSPTQGAAAKALEEGIKQKLEKKEGLFRKNMMG 489
Query: 258 ----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
+++RSVI+ D NEIGVP A+++T+ E V HN +Q+ V N
Sbjct: 490 KRVNYAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAVIN 541
Score = 96 (38.9 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 57 CESCGTSEPGKCEGHFGYIELPIPIYHPSHISEL 90
C +C P C GH G+IELP+P+YHP + ++
Sbjct: 62 CATCNLG-PSACPGHPGHIELPVPVYHPVFMDQV 94
Score = 80 (33.2 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G I F G+ P E H ++ RE ++ ++ S G L + L+ + + I YD +VR
Sbjct: 998 GYIVNRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLEIGYDNSVR 1057
Query: 737 NVCSNSIIQFDY 748
+ S++QF Y
Sbjct: 1058 DA-DGSLVQFLY 1068
Score = 71 (30.1 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 28/93 (30%), Positives = 40/93 (43%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
HL L+A+ MT +G FN G NV PFT+ + + A D+L
Sbjct: 1629 HLNLIADHMTRSGGFTPFNRMGLSG-----NVS-PFTKMSFETTLAFLKDAVLDGDWDDL 1682
Query: 1057 SSVVAACSWGKHVAVGTGSRFDLLWQTENEEFN 1089
S+ G+ VGTG+ FD+ Q F+
Sbjct: 1683 STPSGRLVMGRLGHVGTGA-FDVFTQAPMSHFD 1714
Score = 53 (23.7 bits), Expect = 1.7e-25, Sum P(6) = 1.7e-25
Identities = 27/110 (24%), Positives = 51/110 (46%)
Query: 683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFK-NLMAVLRDVVICYDGTVRNVC-- 739
FF G +P M + TR S + + K N A++++ D +RN
Sbjct: 1132 FFTG-EPVSSMLNP--TRYAYATSEKFFDAMSSYVKENPDALIKEK----DDKLRNSGPQ 1184
Query: 740 SNSIIQF-----DYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
S+SI++ + ++A+ SL GE VG++A ++ P+ + L++
Sbjct: 1185 SSSIVRLNRKAAEKVLSAKYMRSLVHPGEAVGIVAGQSVGEPSTQMTLNT 1234
Score = 42 (19.8 bits), Expect = 3.4e-28, Sum P(6) = 3.4e-28
Identities = 15/76 (19%), Positives = 30/76 (39%)
Query: 487 GFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
G S + L + E + G D+ + +V ++ GP + ++ LL
Sbjct: 777 GVHSEEGQVLFRDGEFISGILDKAQLGPSSGGLVHAVHEVYGPAIAGKLLSAMGRLLTRY 836
Query: 547 LFADGFSVSLEDFSLS 562
L F+ ++D L+
Sbjct: 837 LNMRAFTCGMDDLKLT 852
Score = 40 (19.1 bits), Expect = 4.2e-25, Sum P(6) = 4.2e-25
Identities = 18/58 (31%), Positives = 23/58 (39%)
Query: 1200 KSSDDKLEKAGSPS-------RKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTE 1250
K DDKL +G S RK + A + S E VG A +S E T+
Sbjct: 1172 KEKDDKLRNSGPQSSSIVRLNRKAAEKVLSAKYMRSLVHPGEAVGIVAGQSVGEPSTQ 1229
>CGD|CAL0001661 [details] [associations]
symbol:RPA190 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 CGD:CAL0001661
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AACQ01000244
EMBL:AACQ01000240 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 RefSeq:XP_710723.1 RefSeq:XP_710761.1
ProteinModelPortal:Q59LW3 STRING:Q59LW3 GeneID:3647643
GeneID:3647677 KEGG:cal:CaO19.1839 KEGG:cal:CaO19.9397
Uniprot:Q59LW3
Length = 1665
Score = 166 (63.5 bits), Expect = 6.2e-28, Sum P(5) = 6.2e-28
Identities = 60/205 (29%), Positives = 103/205 (50%)
Query: 333 GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCI 391
G+ V+R I + D V +NR PT HK S+ V V + T++++ G +ADFDGD +
Sbjct: 556 GKKVYRHIKNNDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEM 615
Query: 392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-LKVMFKKYFLDKAFTQ 450
++ +PQ+ A+AE L L + + Q L+ +G+ L D + + + + K F ++ Q
Sbjct: 616 NMHFPQNENARAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNRETYQ 675
Query: 451 QLAMFALSP------------LPRPALSKARCSARWTALQILQSVL---PPGFDSCGDRY 495
QL + P +P PA+ K WT Q++ +VL P D+
Sbjct: 676 QLIYGCIRPEDGHTSKNRIVTVP-PAIYKPEML--WTGKQVITTVLLNIKP--DNVPGVN 730
Query: 496 LIKKSEVLKGDFDRDTIPSVINEIV 520
LI K+++ K D+ ++ S NE++
Sbjct: 731 LISKNKI-KSDYWSES--STENEVI 752
Score = 129 (50.5 bits), Expect = 6.2e-28, Sum P(5) = 6.2e-28
Identities = 56/226 (24%), Positives = 106/226 (46%)
Query: 101 IKNDGVAQRLLSSCCEVKEMLKRI--PEET--RKKLAGKGYF--PQDG--YILEYLPVPP 152
IK+ G ++ +LS+ EV+ +L+ + E+ +K + Y P G + + + VPP
Sbjct: 291 IKHKGGSKYVLST--EVRNILRSLFHKEQAILQKVFHSRPYQHDPISGDLFFKQSVLVPP 348
Query: 153 NCLSVPD-ISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVG 211
+P + D + + + +L ++K +IR N +++ D ++
Sbjct: 349 TRFRLPSKLGDEIHENAQN---ELLSNIIKTSVLIRDLNERITNMYKEKISGEDKKIIFN 405
Query: 212 QYL--------EVRGTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG----FS 259
+ + +V S+++ +A G + PN K LEK LF + G ++
Sbjct: 406 RLMNAFVTLQNDVNAFIDSTKNQNAPAG--KIPNPGIKQALEKKEGLFRKHMMGKRVNYA 463
Query: 260 SRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
+RSVI+ D NEIGVP A+++T+ E V +N + L++ V N
Sbjct: 464 ARSVISPDPNLETNEIGVPPVFAKKLTYPEPVTSYNASELRQAVIN 509
Score = 104 (41.7 bits), Expect = 6.2e-28, Sum P(5) = 6.2e-28
Identities = 27/86 (31%), Positives = 41/86 (47%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHA-SQLANPFLG--LPLEFGK-----CESCGTSE 64
+I + FG+ + +EI S + L +P G L G C +CG E
Sbjct: 10 EITSVDFGVLSDEEIRKLSAKQITNPIVFDNLGHPINGGLYDLSLGAFLRNVCTTCGLDE 69
Query: 65 PGKCEGHFGYIELPIPIYHPSHISEL 90
C GH G+IELP+P+Y+P ++L
Sbjct: 70 KF-CPGHLGHIELPVPVYNPMFFNQL 94
Score = 94 (38.1 bits), Expect = 6.2e-28, Sum P(5) = 6.2e-28
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G IK F+ G+ P E H ++ RE ++ ++ S G L + L L V + YD +VR
Sbjct: 962 GYIKQRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVR 1021
Query: 737 NVCSNSIIQFDY---AVNARK-SH 756
+ ++IQF Y AV+ K SH
Sbjct: 1022 DA-DGTLIQFLYGGDAVDTTKQSH 1044
Score = 78 (32.5 bits), Expect = 6.2e-28, Sum P(5) = 6.2e-28
Identities = 37/136 (27%), Positives = 61/136 (44%)
Query: 949 DSYLDKLSGVLANMIYPVLLETIIK--ENWWVRQRLSASVTMVAKGVLKEHLILLANSMT 1006
D +++ ++G+ +N +Y VL ++ N V + T V HL L+A+ MT
Sbjct: 1535 DDFIN-VNGITSNDVYAVLKTYGVEAARNTIVNEIYRVFDTY-GISVSSRHLDLIADMMT 1592
Query: 1007 CAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWG 1066
G + FN G + S S +++ + F+ + + E+ L S A G
Sbjct: 1593 REGTYLAFNRQGIDS-STSAFMKMSYETTCQFLTKAVLDGDREE-----LESPSAKIVMG 1646
Query: 1067 KHVAVGTGSRFDLLWQ 1082
K VGTGS FD+ Q
Sbjct: 1647 KLSNVGTGS-FDVFAQ 1661
Score = 52 (23.4 bits), Expect = 1.1e-22, Sum P(5) = 1.1e-22
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 17 IRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPG 66
++ G K + TAS+S+ + + L P KC +CG PG
Sbjct: 190 LKDGRTNHKGVVTASVSEERKATIHEFYKRLLSRP----KCTNCGMYSPG 235
Score = 49 (22.3 bits), Expect = 2.1e-23, Sum P(5) = 2.1e-23
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 745 QFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
+F + + SL GE VG++A+ ++ P+ + L++
Sbjct: 1154 KFRALMQLKYMRSLINPGEAVGIIASQSIGEPSTQMTLNT 1193
Score = 47 (21.6 bits), Expect = 7.1e-16, Sum P(5) = 7.1e-16
Identities = 25/131 (19%), Positives = 52/131 (39%)
Query: 490 SCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFA 549
S + + K E+L G D+ + IV S+ GP + L L +
Sbjct: 746 STENEVIFKNGELLSGILDKSQYGASQFGIVHSLHEVYGPTVAGKALSVLGRLFTNYIMM 805
Query: 550 DGFSVSLEDFSLS-KAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAK 608
F+ ++D L+ + W +K+I + +T+ +D +N+ + + + +
Sbjct: 806 TAFTCGMDDLRLTDEGNTW--RKDILKQSVDIGRVAATEVTNLDEDTKNNNKELLRRLEE 863
Query: 609 FILKSSTLGYL 619
+ + LG L
Sbjct: 864 ILRDDNKLGIL 874
Score = 39 (18.8 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 1309 GKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKS 1368
G +S++++ V + KP E W +T + +N + G +++ KS
Sbjct: 687 GHTSKNRIVTVPPAIYKP------EMLWTGKQVITTVLLNIKPDN-VPGVNLISKNKIKS 739
Query: 1369 SDWSE 1373
WSE
Sbjct: 740 DYWSE 744
Score = 37 (18.1 bits), Expect = 8.5e-24, Sum P(5) = 8.5e-24
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 1258 GDKPENVSPAAKTSSGWGSEASWG 1281
GD+ E SP+AK G S G
Sbjct: 1631 GDREELESPSAKIVMGKLSNVGTG 1654
Score = 37 (18.1 bits), Expect = 8.5e-24, Sum P(5) = 8.5e-24
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 1311 SSEDKLEEVETTVA--KPSSAWGTEASWDKSSEV 1342
S D E+ + V KPS + + ++ D+ SEV
Sbjct: 1416 SDSDNEEDADADVDMDKPSKSELSRSAKDRQSEV 1449
>SGD|S000005868 [details] [associations]
symbol:RPA190 "RNA polymerase I largest subunit A190"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IGI;IMP] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 SGD:S000005868 EMBL:BK006948 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:X95720 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790
eggNOG:COG0086 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
HOGENOM:HOG000205401 GeneTree:ENSGT00550000074861 OrthoDB:EOG432464
EMBL:J03530 EMBL:Z75249 PIR:S67250 RefSeq:NP_014986.3
RefSeq:NP_620389.3 ProteinModelPortal:P10964 SMR:P10964
DIP:DIP-999N IntAct:P10964 MINT:MINT-613626 STRING:P10964
PaxDb:P10964 PeptideAtlas:P10964 EnsemblFungi:YOR341W GeneID:854519
GeneID:854523 KEGG:sce:YOR341W KEGG:sce:YOR343W-B CYGD:YOR341w
NextBio:976888 Genevestigator:P10964 GermOnline:YOR341W
Uniprot:P10964
Length = 1664
Score = 147 (56.8 bits), Expect = 6.7e-28, Sum P(7) = 6.7e-28
Identities = 57/190 (30%), Positives = 93/190 (48%)
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIHLF 394
V+R I + D V +NR PT HK S+ V V ++ T++++ G +ADFDGD +++
Sbjct: 577 VYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMH 636
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-LKVMFKKYFLDKAFTQQLA 453
+PQ+ A+AE L L + + Q L+ +G+ L D + + + + K F + QQ
Sbjct: 637 FPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYI 696
Query: 454 MFALSP------------LPRPALSKARCSARWTALQILQSVL----PPGFDSCGDRYLI 497
+ P LP P + K WT QI+ +VL PP D G LI
Sbjct: 697 YGCIRPEDGHTTRSKIVTLP-PTIFKPY--PLWTGKQIITTVLLNVTPP--DMPGIN-LI 750
Query: 498 KKSEVLKGDF 507
K+++ K ++
Sbjct: 751 SKNKI-KNEY 759
Score = 123 (48.4 bits), Expect = 6.7e-28, Sum P(7) = 6.7e-28
Identities = 48/178 (26%), Positives = 80/178 (44%)
Query: 141 DGYILEYLPVPPNCLSVPD-ISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQ 199
D + ++ L VPP +P + + V S + +L KVL +IR +
Sbjct: 353 DSFFMDVLVVPPTRFRLPSKLGEEVHENSQN---QLLSKVLTTSLLIRDLNDDLSKLQKD 409
Query: 200 EVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTT--------KAWLEKMRTLF 251
+V D ++ + + T ++ DV+A ++ T+ K LEK LF
Sbjct: 410 KVSLEDRRVIFSRLMNAFVTIQN--DVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLF 467
Query: 252 IRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
+ G +++RSVI+ D NEIGVP A ++T+ E V +NI L++ V N
Sbjct: 468 RKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVIN 525
Score = 108 (43.1 bits), Expect = 6.7e-28, Sum P(7) = 6.7e-28
Identities = 30/92 (32%), Positives = 43/92 (46%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHA-SQLANPFLG--LPLEFGK-----CESCGTSE 64
+I + FG+ T KEI S + L +P G L G C +CG E
Sbjct: 10 EITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRNLCSTCGLDE 69
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTMYA 96
C GH G+IELP+P Y+P ++L + + A
Sbjct: 70 KF-CPGHQGHIELPVPCYNPLFFNQLYIYLRA 100
Score = 100 (40.3 bits), Expect = 6.7e-28, Sum P(7) = 6.7e-28
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G +KG F+ G+ P E H ++ RE ++ ++ S G L + L L V + YD ++R
Sbjct: 980 GYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIR 1039
Query: 737 NVCSNSIIQFDYAVNA 752
+ +++QF Y +A
Sbjct: 1040 DA-DGTLVQFMYGGDA 1054
Score = 82 (33.9 bits), Expect = 6.7e-28, Sum P(7) = 6.7e-28
Identities = 35/139 (25%), Positives = 67/139 (48%)
Query: 949 DSYLDKLSGVLANMIYPVLLETIIK--ENWWVRQRLSASVTMVAKGVLKEHLILLANSMT 1006
++++D + G+ +N + VL ++ N V + ++ + A V HL L+A+ MT
Sbjct: 1533 EAFID-VDGITSNDVAAVLKTYGVEAARNTIVNE-INNVFSRYAISVSFRHLDLIADMMT 1590
Query: 1007 CAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWG 1066
G + FN G + + S +++ + F+ + + E+ D+ S+ + G
Sbjct: 1591 RQGTYLAFNRQGMETSTSSF-MKMSYETTCQFLTKAVLDN--EREQLDSPSARIVV---G 1644
Query: 1067 KHVAVGTGSRFDLLWQTEN 1085
K VGTGS FD+L + N
Sbjct: 1645 KLNNVGTGS-FDVLAKVPN 1662
Score = 58 (25.5 bits), Expect = 1.6e-25, Sum P(7) = 1.6e-25
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 1066 GKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLE 1125
GK V V G F +W + E F DG+ D ++++ G+E + E++ +
Sbjct: 1515 GKRVLVTEGVNFQAMW--DQEAFIDVDGITSNDVAAVLKTY-GVEAA-RNTIVNEINNVF 1570
Query: 1126 DEFDWSLSPEH-NLCSD 1141
+ S+S H +L +D
Sbjct: 1571 SRYAISVSFRHLDLIAD 1587
Score = 55 (24.4 bits), Expect = 1.1e-22, Sum P(7) = 1.1e-22
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 20 GLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEP 65
G T++ TA+++D +L + F L GKC++CG P
Sbjct: 200 GRTTERGSFTATVND----ERKKLVHEFHKKLLSRGKCDNCGMFSP 241
Score = 52 (23.4 bits), Expect = 6.7e-28, Sum P(7) = 6.7e-28
Identities = 19/76 (25%), Positives = 30/76 (39%)
Query: 487 GFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMEN 546
G S + L K +L G D+ + IV S+ GPE + L L
Sbjct: 761 GKGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNY 820
Query: 547 LFADGFSVSLEDFSLS 562
+ A F+ ++D L+
Sbjct: 821 ITATAFTCGMDDLRLT 836
Score = 49 (22.3 bits), Expect = 6.7e-28, Sum P(7) = 6.7e-28
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 745 QFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
+F + + SL GE VG++A+ ++ P+ + L++
Sbjct: 1165 KFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNT 1204
Score = 42 (19.8 bits), Expect = 6.0e-24, Sum P(7) = 6.0e-24
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 1141 DKPVFEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEK 1187
D+P ED +E E + DS+ + SED+ + + K
Sbjct: 1385 DEPD-EDEIETMREAEKSSDEEGIDSDKESDSDSEDEDVDMNEQINK 1430
>UNIPROTKB|Q6NX41 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AC113189 GO:GO:0003899 IPI:IPI00031627
UniGene:Hs.270017 HGNC:HGNC:9187 ChiTaRS:POLR2A EMBL:BC067295
SMR:Q6NX41 STRING:Q6NX41 Ensembl:ENST00000572844 UCSC:uc002ghe.3
HOVERGEN:HBG097653 Uniprot:Q6NX41
Length = 566
Score = 305 (112.4 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 117/407 (28%), Positives = 181/407 (44%)
Query: 53 EFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLS 112
+FG + G + K +GH G Y P I L +YA + D +++L
Sbjct: 163 KFGVEQPEGDEDLTKEKGHGGCGR-----YQP-RIRRSGLELYAEWKHVNEDSQEKKILL 216
Query: 113 SCCEVKEMLKRIPEETRKKLAGKG-YFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDL 171
S V E+ KRI +E L + Y + I+ LPVPP + + G + DL
Sbjct: 217 SPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDL 276
Query: 172 SIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFG 231
+ K+ V+I R N + V + D++L Q+ +
Sbjct: 277 T----HKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL--QFHVATMVDNELPGLPRAMQ 330
Query: 232 VSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITF 287
S P + K L+ ++R + K FS+R+VIT D ++++GVP IA +TF
Sbjct: 331 KSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTF 390
Query: 288 EERVNVHNINYLQELV--DNKLC--LTY--SDGSSSYSLREGSK-GHTFLRPGQVVHRRI 340
E V NI+ LQELV N Y D LR K L+ G V R +
Sbjct: 391 AEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHM 450
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
DGD V NR PT HK S+ V + T ++N + P +ADFDGD ++L PQSL
Sbjct: 451 CDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLE 510
Query: 401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDK 446
+AE+ EL V + +++ + + + D L +++ K+ FL++
Sbjct: 511 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557
Score = 89 (36.4 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 17 IRFGLATQKEICTASISDCSISHASQ----------LANPFLGLPLEFGKCESCGTSEPG 66
++FG+ + E+ S+++ I + L +P G+ G+C++C +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMT- 79
Query: 67 KCEGHFGYIELPIPIYH 83
+C GHFG+IEL P++H
Sbjct: 80 ECPGHFGHIELAKPVFH 96
>POMBASE|SPBC4C3.05c [details] [associations]
symbol:nuc1 "DNA-directed RNA polymerase I complex large
subunit Nuc1" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IGI] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 PomBase:SPBC4C3.05c
GO:GO:0005829 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0034503 GO:GO:0006360
GO:GO:0007000 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999
OMA:CLLNETT PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 EMBL:X14783
EMBL:M37411 PIR:JS0080 RefSeq:NP_596300.1 ProteinModelPortal:P15398
STRING:P15398 EnsemblFungi:SPBC4C3.05c.1 GeneID:2540873
KEGG:spo:SPBC4C3.05c OrthoDB:EOG432464 NextBio:20801989
Uniprot:P15398
Length = 1689
Score = 165 (63.1 bits), Expect = 3.7e-26, Sum P(7) = 3.7e-26
Identities = 50/162 (30%), Positives = 81/162 (50%)
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIHLF 394
V+R + +GD + +NR PT HK S+ A + + T++++ C +ADFDGD +++
Sbjct: 593 VYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMH 652
Query: 395 YPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATD-ALLSLKVMFKKYFLDKAFTQQLA 453
+PQS A++E + + + Q L +G+ L D ++ + + K F + QQL
Sbjct: 653 FPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLL 712
Query: 454 MFALSP-----------LPRPALSKARCSARWTALQILQSVL 484
AL P LP PA+ R WT QI+ SVL
Sbjct: 713 FQALKPDETGMYGRIKTLP-PAIQ--RPGIYWTGKQIISSVL 751
Score = 123 (48.4 bits), Expect = 3.7e-26, Sum P(7) = 3.7e-26
Identities = 65/259 (25%), Positives = 111/259 (42%)
Query: 62 TSEPGKCEGHFGYIELPIPIYHPSHISELKLTMYAFQLQIKNDGVAQRLLSSCCEVKE-- 119
+S + EG + E P P+ + S Y +++N +RL VKE
Sbjct: 289 SSNESEVEGIDLFEEDPNPLKNKSKSPIAHGAKYMTSTEVRNH--LRRLF-----VKENV 341
Query: 120 MLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKV 179
+L R+ R K A D + L+ + VPP P G + ++ +L ++
Sbjct: 342 VLSRLYAHKRGKPASA-----DMFFLQNIAVPPTRFR-PASKMG-DEVHENIQNELLTRI 394
Query: 180 LKQ-VEIIRSSRSGTPNFESQEVE-----SNDLQLAVGQYLEVRGTAKSSRDVD---ARF 230
L+ ++I S+ T E E S +L + +++++ S D + +
Sbjct: 395 LQSSIQIASLSKDSTVEVNPDEKEGLERRSRAFELLINAFVQLQHDVNSLIDSNRNPSSG 454
Query: 231 GVSQDPNSTTKAWLEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRIT 286
G S+ K LEK LF + G +++RSVI+ D NEIGVP A ++T
Sbjct: 455 GQSRTVPPGIKQILEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLT 514
Query: 287 FEERVNVHNINYLQELVDN 305
+ E V ++N N ++ V N
Sbjct: 515 YPEPVTLYNFNEMRNAVIN 533
Score = 100 (40.3 bits), Expect = 3.7e-26, Sum P(7) = 3.7e-26
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 25 KEICTASISDCSISHASQ--LANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIY 82
K+I + D +++H + L + LG L+ C +C E C GHFG+I LPIP Y
Sbjct: 30 KQIVNPVLLD-NLNHPTNGGLYDLALGPYLKNSVCATCHLDER-YCPGHFGHIVLPIPAY 87
Query: 83 HPSHISEL 90
HP S++
Sbjct: 88 HPLFFSQM 95
Score = 96 (38.9 bits), Expect = 3.7e-26, Sum P(7) = 3.7e-26
Identities = 30/85 (35%), Positives = 43/85 (50%)
Query: 666 PMDLNYPT-AKYG-LIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAV 723
P + Y T AK G I F G+ P E H ++ RE ++ ++ S G L + LM
Sbjct: 980 PSFVPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKH 1039
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDY 748
L + + YD TVR+ SI+QF Y
Sbjct: 1040 LEGLCVQYDHTVRD-SDGSIVQFHY 1063
Score = 61 (26.5 bits), Expect = 3.7e-26, Sum P(7) = 3.7e-26
Identities = 27/86 (31%), Positives = 42/86 (48%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQV---PFTEATLFMPRKCFEKAAEKRHT 1053
HL L+A+ MT F GGYKA +R + ++ PF + + +AA +
Sbjct: 1604 HLSLIADYMT-------FE-GGYKAFNR-MGIEYNTSPFAKMSFETTCHFLTEAALRGDV 1654
Query: 1054 DNLSSVVAACSWGKHVAVGTGSRFDL 1079
D+LS+ + G+ GTGS FD+
Sbjct: 1655 DDLSNPSSRLVVGRVGNFGTGS-FDI 1679
Score = 57 (25.1 bits), Expect = 3.7e-26, Sum P(7) = 3.7e-26
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 745 QFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
+F + R SL GE VGVLA+ ++ P+ + L++
Sbjct: 1174 KFKALMQLRYQQSLVDPGESVGVLASQSIGEPSTQMTLNT 1213
Score = 41 (19.5 bits), Expect = 3.7e-26, Sum P(7) = 3.7e-26
Identities = 17/75 (22%), Positives = 28/75 (37%)
Query: 489 DSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLF 548
DS L E+L G D+ + + +V S+ GP+ L L
Sbjct: 778 DSEEGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQ 837
Query: 549 ADGFSVSLEDFSLSK 563
GF+ ++D L +
Sbjct: 838 MRGFTCRMDDLRLDE 852
Score = 39 (18.8 bits), Expect = 6.0e-18, Sum P(7) = 6.0e-18
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 293 VHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMD 342
V N++ + ++ N DGS S + GH + RI D
Sbjct: 137 VENVSLTEAIIKNSNGTPLEDGSDS---EDSGLGHDDIAKDAATLMRIRD 183
Score = 38 (18.4 bits), Expect = 6.7e-24, Sum P(7) = 6.7e-24
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 1316 LEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQD 1364
L+ +E P EA D+ ++ T EK+ + ++ S G + D
Sbjct: 1362 LKPLEDIDEAPIEGRAQEALEDEDNDATNEKMVSRSKQHASYEGPDEAD 1410
Score = 38 (18.4 bits), Expect = 1.9e-19, Sum P(5) = 1.9e-19
Identities = 15/70 (21%), Positives = 34/70 (48%)
Query: 510 DTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNI 569
DT+P VI E V + + EF++ + M +++ + + L + + +AA I
Sbjct: 1537 DTVPKVITEGVNL-------KAIWEFYNEIS---MNDIYTNDIAAILRIYGV-EAARNAI 1585
Query: 570 QKEIQALYSL 579
E+ +++ +
Sbjct: 1586 VHEVSSVFGV 1595
>WB|WBGene00012999 [details] [associations]
symbol:rpoa-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
HSSP:P04050 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:Z83219 EMBL:AL032648 EMBL:Z93392
PIR:A88355 PIR:T19606 RefSeq:NP_001022450.1
ProteinModelPortal:G5ED21 SMR:G5ED21 PRIDE:G5ED21
EnsemblMetazoa:Y48E1A.1a GeneID:175015 KEGG:cel:CELE_Y48E1A.1
CTD:175015 WormBase:Y48E1A.1a NextBio:886412 Uniprot:G5ED21
Length = 1737
Score = 149 (57.5 bits), Expect = 6.9e-26, Sum P(7) = 6.9e-26
Identities = 61/200 (30%), Positives = 95/200 (47%)
Query: 118 KEMLKRIPEETRKKLAGKGYF-PQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAML 176
K +LK P +L G+ P DG LE + VPP + G D L
Sbjct: 328 KLLLKLFPMLV-DELNGEDMICPLDGLFLERILVPPKKFRPIRMFKGAQY--EDPQTLNL 384
Query: 177 KKVLKQVEIIRSSR---SGTPNFESQEVESNDLQLAV--GQ----YLEVRGTAKSSRDVD 227
+KVL+ E I + G + + +E+ +N ++ Q YL+++ A + D D
Sbjct: 385 RKVLEATETISAISLIMKGDTSAQLKELIANRVRGKTINAQMHDAYLQLQLRANAIFDQD 444
Query: 228 ARFGVSQDPNSTTKAWLEKMRTLF----IRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQ 283
G +D + K LEK + LF + K F+ RSVIT D Y ++EIG+P A+
Sbjct: 445 LNKG-DRDSIAGIKQILEKKQGLFRMHMMGKRVNFACRSVITPDPYLDIDEIGIPDIFAK 503
Query: 284 RITFEERVNVHNINYLQELV 303
++TF E VN N+N ++ L+
Sbjct: 504 KLTFTEPVNAFNVNEMKGLL 523
Score = 122 (48.0 bits), Expect = 6.9e-26, Sum P(7) = 6.9e-26
Identities = 46/163 (28%), Positives = 76/163 (46%)
Query: 330 LRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDG 388
LR V R + +GD + +NR P+ HK S+ V +++N C +ADFDG
Sbjct: 571 LRQTPKVLRHMKNGDMIMMNRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDG 630
Query: 389 DCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-LKVMFKKYFLDKA 447
D ++ QS A+ EV E+ +V L + L L D ++S + + + FL+K
Sbjct: 631 DEMNGHLVQSHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKE 690
Query: 448 -FTQQ-LAMFALSP----LPRPALSKARCSARWTALQILQSVL 484
F LA FA +P P + + WT Q++ +++
Sbjct: 691 DFMHLVLASFAQYSKRIEIPPPTILYPK--RLWTGKQVITTIV 731
Score = 103 (41.3 bits), Expect = 6.9e-26, Sum P(7) = 6.9e-26
Identities = 34/112 (30%), Positives = 53/112 (47%)
Query: 40 ASQLANPFLGLPLEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPSHI----SELKLT-M 94
A L +P LG F C +C E C GH G+I+L +P+++P + LK + +
Sbjct: 50 AGGLYDPILGPDNTFDMCMTCNQYER-HCPGHMGHIQLAVPVFNPLLFQFTYNLLKGSCV 108
Query: 95 YAFQLQIKNDGVAQRLLSS---CCE--VKEMLKRIPEETRKKLAGKGYFPQD 141
+ +L K DGV R+L + C E V+ + + R K+A F D
Sbjct: 109 HCHRLTCKGDGVNARMLLAQLRCFELGVEHVAFDLESILRDKIANADLFGDD 160
Score = 92 (37.4 bits), Expect = 6.9e-26, Sum P(7) = 6.9e-26
Identities = 34/113 (30%), Positives = 53/113 (46%)
Query: 636 GFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPTAKYGLIKGCFFHGLDPYEEMTH 695
G LG Q+ GK + T+ F P P A G I F G++P E H
Sbjct: 950 GCLG-QIELEGKRMAVTIAGRTLPSFRCFDPS----PRAG-GYIDQRFLTGMNPQELFFH 1003
Query: 696 SISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDY 748
+++ RE ++ ++ S G L + ++ L + + YD TVR+ S+IQF Y
Sbjct: 1004 TMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDH-DGSVIQFRY 1055
Score = 90 (36.7 bits), Expect = 6.9e-26, Sum P(7) = 6.9e-26
Identities = 48/147 (32%), Positives = 65/147 (44%)
Query: 954 KLSGVL-ANMIYPVLLETIIKENWWVRQRLSASVTMVAKGVL--------KEHLILLANS 1004
K + VL N +Y L I+ EN+ V + S ++T V K HL L A+
Sbjct: 1585 KHADVLDVNSVYSNDLNLIL-ENYGV-EACSKAITTEMNNVFAVYGIEVSKRHLSLTADY 1642
Query: 1005 MTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACS 1064
MT G + FN G + S L ++ F E T+ R+ E DN++S A
Sbjct: 1643 MTFTGQIQPFNRGAMSSSSSPLQ-KMTF-ETTMAFLREALLHGEE----DNVNSPSARLV 1696
Query: 1065 WGKHVAVGTGSRFDLL----WQTENEE 1087
G GTGS FDLL Q+E EE
Sbjct: 1697 MGALPRGGTGS-FDLLLDTKMQSEREE 1722
Score = 49 (22.3 bits), Expect = 6.9e-26, Sum P(7) = 6.9e-26
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
SL GE VG+LAA ++ P+ + L++
Sbjct: 1227 SLADPGENVGLLAAQSIGEPSTQMTLNT 1254
Score = 42 (19.8 bits), Expect = 1.3e-20, Sum P(6) = 1.3e-20
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 1228 SSCDKWENVGSPAAKSFSEWGTE 1250
S D ENVG AA+S E T+
Sbjct: 1227 SLADPGENVGLLAAQSIGEPSTQ 1249
Score = 38 (18.4 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 1290 NVGGSASKPLSGW 1302
N+ G A PLS W
Sbjct: 743 NLDGKAKTPLSCW 755
Score = 37 (18.1 bits), Expect = 6.9e-26, Sum P(7) = 6.9e-26
Identities = 16/80 (20%), Positives = 29/80 (36%)
Query: 486 PGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLME 545
P FD + ++ E+L G D+ + + F G ++ L
Sbjct: 763 PQFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTT 822
Query: 546 NLFADGFSVSLEDFSLSKAA 565
L GF++ + D + K A
Sbjct: 823 YLQFHGFTLGVADILVVKDA 842
>TAIR|locus:2075190 [details] [associations]
symbol:AT3G46630 "AT3G46630" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0042631 "cellular response to water
deprivation" evidence=RCA] InterPro:IPR015801 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005507 GO:GO:0048038
GO:GO:0009308 Gene3D:3.10.450.40 EMBL:AL133314 InterPro:IPR021602
Pfam:PF11523 HOGENOM:HOG000005673 EMBL:AY086108 EMBL:BT005493
EMBL:AK118966 IPI:IPI00517277 PIR:T45600 RefSeq:NP_190247.1
UniGene:At.35903 ProteinModelPortal:Q9SNB5 SMR:Q9SNB5 STRING:Q9SNB5
PaxDb:Q9SNB5 PRIDE:Q9SNB5 EnsemblPlants:AT3G46630.1 GeneID:823816
KEGG:ath:AT3G46630 TAIR:At3g46630 eggNOG:NOG311427
InParanoid:Q9SNB5 OMA:VDRHPQF PhylomeDB:Q9SNB5
ProtClustDB:CLSN2685120 ArrayExpress:Q9SNB5 Genevestigator:Q9SNB5
Uniprot:Q9SNB5
Length = 207
Score = 291 (107.5 bits), Expect = 4.1e-24, P = 4.1e-24
Identities = 52/117 (44%), Positives = 74/117 (63%)
Query: 1578 EQDILSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHF 1637
E +IL D+EPI + I+H Y DG+RL +D+ + + + YHP K+G G+D
Sbjct: 91 EAEILRDIEPISLLAKEILHSDRYLDGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFI 150
Query: 1638 KVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLVDEFIGKYFRRPRS 1694
VD+H F+ SRCLFVV TDG DFSY+KCL +++R KYP + FI ++F+R S
Sbjct: 151 MVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAERFIREHFKRASS 207
>TAIR|locus:2076661 [details] [associations]
symbol:NRPA1 "nuclear RNA polymerase A1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0006406
"mRNA export from nucleus" evidence=RCA] [GO:0006606 "protein
import into nucleus" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0009506 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
EMBL:AL049660 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 HSSP:P04050 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 IPI:IPI00546513
PIR:T06754 RefSeq:NP_191325.1 UniGene:At.50286
ProteinModelPortal:Q9SVY0 SMR:Q9SVY0 IntAct:Q9SVY0 STRING:Q9SVY0
PaxDb:Q9SVY0 PRIDE:Q9SVY0 EnsemblPlants:AT3G57660.1 GeneID:824935
KEGG:ath:AT3G57660 TAIR:At3g57660 InParanoid:Q9SVY0
PhylomeDB:Q9SVY0 ProtClustDB:CLSN2684581 Genevestigator:Q9SVY0
Uniprot:Q9SVY0
Length = 1670
Score = 187 (70.9 bits), Expect = 4.5e-23, Sum P(6) = 4.5e-23
Identities = 44/122 (36%), Positives = 66/122 (54%)
Query: 333 GQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCI 391
G+ VHR + DGD V +NR PT HK SL A V V + T++++ C +ADFDGD +
Sbjct: 549 GKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEM 608
Query: 392 HLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQ 450
++ +PQ ++AE + + Q NG L D ++S ++ K+ FLDK
Sbjct: 609 NVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFN 668
Query: 451 QL 452
QL
Sbjct: 669 QL 670
Score = 132 (51.5 bits), Expect = 9.2e-18, Sum P(5) = 9.2e-18
Identities = 67/243 (27%), Positives = 103/243 (42%)
Query: 143 YILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVE 202
+ LE + VPP P + G S M ++ L KV++ I+ ++ + +
Sbjct: 341 FFLESVLVPPTKFR-PPTTGGDSVMEHPQTVG-LNKVIESNNILGNACTNKLDQSKVIFR 398
Query: 203 SNDLQLAVGQYLEVR-GTAKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSG---- 257
+LQ +V + + T +S RD G+ Q LEK LF +K G
Sbjct: 399 WRNLQESVNVLFDSKTATVQSQRDSS---GICQ--------LLEKKEGLFRQKMMGKRVN 447
Query: 258 FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLT-----YS 312
+ RSVI+ D Y VN+IG+P A ++T+ ERV N+ L+E + N + YS
Sbjct: 448 HACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYS 507
Query: 313 DGSSSYSLREGSKGHTFLRPGQVVHRRIMD--GDTVFIN-RPPTTHKHSLQALSVYVHDD 369
D SS+ L K + + R G T IN T H+H V V+
Sbjct: 508 DKSSTMKLPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQ 567
Query: 370 HTV 372
T+
Sbjct: 568 PTL 570
Score = 104 (41.7 bits), Expect = 4.5e-23, Sum P(6) = 4.5e-23
Identities = 33/92 (35%), Positives = 45/92 (48%)
Query: 665 YPMDLNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVL 724
+P D + P A G I F GL P E H ++ RE +V ++ S G L + LM L
Sbjct: 983 HPWDWS-PRAG-GFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNL 1040
Query: 725 RDVVICYDGTVRNVCSNSIIQFDYAVNARKSH 756
+ + YD TVR+ SIIQF Y + H
Sbjct: 1041 ESLKVNYDCTVRDA-DGSIIQFQYGEDGVDVH 1071
Score = 101 (40.6 bits), Expect = 4.5e-23, Sum P(6) = 4.5e-23
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 13 QIV-GIRFGLATQKEICTASISDCS--ISHASQLANPFLG--LPLEFGK------CESCG 61
Q+V +RF T++++ S + I H + NPF G L+ G C SCG
Sbjct: 25 QVVESVRFSFMTEQDVRKHSFLKVTSPILH-DNVGNPFPGGLYDLKLGPKDDKQACNSCG 83
Query: 62 TSEPGKCEGHFGYIELPIPIYHP 84
+ C GH G+IEL PIYHP
Sbjct: 84 QLKLA-CPGHCGHIELVFPIYHP 105
Score = 73 (30.8 bits), Expect = 4.5e-23, Sum P(6) = 4.5e-23
Identities = 38/119 (31%), Positives = 51/119 (42%)
Query: 969 ETIIKENWWVRQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNV 1028
ETII+E V + SV++ HL L+A+ MT F SGGY+ +SR +
Sbjct: 1567 ETIIREINHVFKSYGISVSI-------RHLNLIADYMT-------F-SGGYRPMSRMGGI 1611
Query: 1029 QV---PFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTE 1084
PF T K +AA D L + A G GTG FDL+ + E
Sbjct: 1612 AESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGC-FDLMQRVE 1669
Score = 61 (26.5 bits), Expect = 4.5e-23, Sum P(6) = 4.5e-23
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
SL GEPVGVLAA ++ P+ + L++
Sbjct: 1150 SLAQPGEPVGVLAAQSVGEPSTQMTLNT 1177
Score = 61 (26.5 bits), Expect = 6.9e-22, Sum P(6) = 6.9e-22
Identities = 20/88 (22%), Positives = 44/88 (50%)
Query: 1458 DAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQ 1517
D +GT+ G + + TD+ + ++++E+E+ +P+S + + P+ +E + +
Sbjct: 1344 DGEGTEVDDLGSDAQKQKKQETDEMDY--EENSEDETNEPSSISGVEDPEMDSENE-DTE 1400
Query: 1518 VWGQSRKEPFKKNRGWASSSGEWKGKKN 1545
V + EP +++ E KG KN
Sbjct: 1401 VSKEDTPEPQEESM---EPQKEVKGVKN 1425
Score = 51 (23.0 bits), Expect = 0.00025, Sum P(4) = 0.00025
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 21 LATQKEICTASISDCSISHASQLANPFLGLPLEFGKCES 59
L T K++ TA ++ + H LP++F KC S
Sbjct: 714 LWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRS 752
Score = 42 (19.8 bits), Expect = 4.1e-14, Sum P(5) = 4.1e-14
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 1117 LGEEVDGLEDEFDWSLSPEHNLCSDKPVFEDLVED 1151
L E+ + D S+ N CS K V DL+ D
Sbjct: 893 LYEDGESALASLDRSIVNYLNQCSSKGVMNDLLSD 927
Score = 41 (19.5 bits), Expect = 4.5e-23, Sum P(6) = 4.5e-23
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 80 PIYHP--SHISELKLTMYAFQLQIKNDGVAQRLLSS 113
P HP +H S+ TM + +A++LLSS
Sbjct: 497 PDIHPGATHYSDKSSTMKLPSTEKARRAIARKLLSS 532
Score = 41 (19.5 bits), Expect = 6.6e-20, Sum P(6) = 6.6e-20
Identities = 26/97 (26%), Positives = 35/97 (36%)
Query: 1118 GEEVDGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENANWDSE-ADCRKSSED 1176
G EVD L + E + + ED + S + E+ DSE D S ED
Sbjct: 1347 GTEVDDLGSDAQKQKKQETDEMDYEENSEDETNEPSSISGV-EDPEMDSENEDTEVSKED 1405
Query: 1177 KWEKLGTSLE--KPSSGWRTEGAWGKSSDDKLEKAGS 1211
E S+E K G + K K +A S
Sbjct: 1406 TPEPQEESMEPQKEVKGVKNVKEQSKKKRRKFVRAKS 1442
Score = 41 (19.5 bits), Expect = 3.4e-15, Sum P(5) = 3.4e-15
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 810 IDRRVILYLNDC 821
+DR ++ YLN C
Sbjct: 904 LDRSIVNYLNQC 915
Score = 38 (18.4 bits), Expect = 1.3e-19, Sum P(6) = 1.3e-19
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 1408 KLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSA 1442
++DD+GS + D+ +++++PS+
Sbjct: 1349 EVDDLGSDAQKQKKQETDEMDYEENSEDETNEPSS 1383
>TAIR|locus:504956149 [details] [associations]
symbol:AT1G45230 "AT1G45230" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM;IDA] InterPro:IPR015801 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0005507 GO:GO:0048038
GO:GO:0009308 Gene3D:3.10.450.40 EMBL:AC083835 InterPro:IPR021602
Pfam:PF11523 EMBL:AY128277 EMBL:BT014877 EMBL:AK220622
IPI:IPI00534712 PIR:C96510 RefSeq:NP_683398.1 UniGene:At.38718
ProteinModelPortal:Q9C642 SMR:Q9C642 PaxDb:Q9C642 PRIDE:Q9C642
EnsemblPlants:AT1G45230.1 GeneID:841096 KEGG:ath:AT1G45230
TAIR:At1g45230 eggNOG:NOG257121 HOGENOM:HOG000005673
InParanoid:Q9C642 OMA:CIKGLIK PhylomeDB:Q9C642
ProtClustDB:CLSN2915113 Genevestigator:Q9C642 Uniprot:Q9C642
Length = 219
Score = 253 (94.1 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 49/122 (40%), Positives = 70/122 (57%)
Query: 1572 DMFTSEEQDILSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMG 1631
D F E IL P++ +R I+H Y + DRLS + + I + + YHP+ K+G
Sbjct: 95 DEFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIG 154
Query: 1632 AGIDHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLVDEFIGKYFRR 1691
GID+ V H F+ SRC+F+V DG DFSY KC++ I+ KYP D FI ++FR+
Sbjct: 155 CGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
Query: 1692 PR 1693
R
Sbjct: 215 RR 216
Score = 39 (18.8 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 1390 EENSGWDTKASWKTKALD 1407
EENS D W+ K L+
Sbjct: 89 EENSEGDEFVDWEDKILE 106
>FB|FBgn0019938 [details] [associations]
symbol:RpI1 "RNA polymerase I subunit" species:7227
"Drosophila melanogaster" [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:AE013599 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 EMBL:Y09103 EMBL:AY121632 PIR:T13803
RefSeq:NP_523743.1 UniGene:Dm.8031 ProteinModelPortal:P91875
SMR:P91875 MINT:MINT-1742038 STRING:P91875 PaxDb:P91875
GeneID:36617 KEGG:dme:Dmel_CG10122 CTD:36617 FlyBase:FBgn0019938
InParanoid:P91875 OrthoDB:EOG466T1R GenomeRNAi:36617 NextBio:799515
Bgee:P91875 GermOnline:CG10122 Uniprot:P91875
Length = 1642
Score = 195 (73.7 bits), Expect = 5.4e-20, Sum P(6) = 5.4e-20
Identities = 63/214 (29%), Positives = 103/214 (48%)
Query: 292 NVH-NINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRP--G-QVVHRRIMDGDTVF 347
+VH NY+Q D TY ++ S RE P G ++VHR +++GD +
Sbjct: 471 DVHPGANYIQ---DKNGFTTYIPADNA-SKRESLAKLLLSNPKDGIKIVHRHVLNGDVLL 526
Query: 348 INRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVL 406
+NR P+ HK S+ + H + T +++ C +ADFDGD ++ YPQS A+AE
Sbjct: 527 LNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAY 586
Query: 407 ELFSVEKQLLSSHNGNLNLQLATDALLS-LKVMFKKYFLDKAFTQQLAMFALSPLPR--- 462
L +V L +G L D ++S +K+ + F ++ QQL LS L +
Sbjct: 587 NLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVFQGLSQLKKDIK 646
Query: 463 ---PALSKARCSARWTALQILQSVL----PPGFD 489
P + K + W+ QIL +++ P G++
Sbjct: 647 LLPPTILKP--AVLWSGKQILSTIIINIIPEGYE 678
Score = 124 (48.7 bits), Expect = 9.3e-13, Sum P(6) = 9.3e-13
Identities = 60/252 (23%), Positives = 117/252 (46%)
Query: 139 PQDGYILEYLPV-PPNCLSVPDISDGVS-TMSSDLSIAMLKK------VLK-----QVEI 185
P D + ++ LPV PP + + D + +D+ I +++ VLK Q ++
Sbjct: 291 PVDLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKL 350
Query: 186 IRSSRSGTPNFESQEVESN--DLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAW 243
+++ + + LA+ ++V SR++ + G+ Q K+
Sbjct: 351 TEEAKAAYQTLKGETAHEKLYTAWLALQMSVDVLLDVNMSREMKSGEGLKQIIEK--KSG 408
Query: 244 LEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELV 303
L +R+ + K +++R+VIT D V+EIG+P A+++++ V N+ L+++V
Sbjct: 409 L--IRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMV 466
Query: 304 DNKLCL----TY---SDGSSSY------SLREGSKGHTFLRP--G-QVVHRRIMDGDTVF 347
N + Y +G ++Y S RE P G ++VHR +++GD +
Sbjct: 467 MNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLSNPKDGIKIVHRHVLNGDVLL 526
Query: 348 INRPPTTHKHSL 359
+NR P+ HK S+
Sbjct: 527 LNRQPSLHKPSI 538
Score = 94 (38.1 bits), Expect = 5.4e-20, Sum P(6) = 5.4e-20
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G I G F G+ P + H ++ RE ++ ++ S G L + L+ L + + YD TVR
Sbjct: 927 GFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVR 986
Query: 737 NVCSNSIIQFDY 748
+ NS++QF Y
Sbjct: 987 D-SDNSVVQFLY 997
Score = 88 (36.0 bits), Expect = 5.4e-20, Sum P(6) = 5.4e-20
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 54 FGKC-ESCGTS-EPGKCEGHFGYIELPIPIYHPSHISELK-----LTMYAFQLQIKN 103
+G+C + CGT + C GH G+IEL P+Y+P I ++ ++ ++LQ+K+
Sbjct: 59 YGRCMDPCGTCLKLQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKD 115
Score = 62 (26.9 bits), Expect = 5.4e-20, Sum P(6) = 5.4e-20
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 995 KEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTD 1054
+ HL L+A+ MT G + G + S L Q+ F + F+ + AA D
Sbjct: 1560 RRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQ-QMSFESSLQFL-----KSAAGFGRAD 1613
Query: 1055 NLSSVVAACSWGKHVAVGTGSRFDLL 1080
LSS + G V GTG+ F+LL
Sbjct: 1614 ELSSPSSRLMVGLPVRNGTGA-FELL 1638
Score = 56 (24.8 bits), Expect = 5.4e-20, Sum P(6) = 5.4e-20
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
SL GEPVG++AA ++ P+ + L++
Sbjct: 1170 SLAAPGEPVGLIAAQSIGEPSTQMTLNT 1197
Score = 46 (21.3 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 1129 DWSLS-PEHNLCSDKPVFEDLVEDQSWLEN 1157
+W++S P +C P DL E Q + N
Sbjct: 692 NWNVSRPRPPICGTNPEGNDLSESQVQIRN 721
Score = 40 (19.1 bits), Expect = 5.4e-20, Sum P(6) = 5.4e-20
Identities = 14/81 (17%), Positives = 33/81 (40%)
Query: 485 PPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLM 544
P G D + I+ E+L G D+ + ++ ++ G + + +
Sbjct: 707 PEGNDLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVSTLLLTAFTKVFT 766
Query: 545 ENLFADGFSVSLEDFSLSKAA 565
L +GF++ ++D ++ A
Sbjct: 767 FFLQLEGFTLGVKDILVTDVA 787
Score = 38 (18.4 bits), Expect = 1.4e-12, Sum P(6) = 1.4e-12
Identities = 6/13 (46%), Positives = 12/13 (92%)
Query: 639 GLQLSDRGKFYSK 651
G++LS RG+F+++
Sbjct: 615 GVKLSIRGRFFNR 627
>UNIPROTKB|E1BIX2 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11 CTD:25885
GeneTree:ENSGT00550000074861 EMBL:DAAA02031123 IPI:IPI00714586
RefSeq:NP_001179805.1 UniGene:Bt.52712 PRIDE:E1BIX2
Ensembl:ENSBTAT00000008496 GeneID:536316 KEGG:bta:536316
NextBio:20876927 Uniprot:E1BIX2
Length = 1717
Score = 144 (55.7 bits), Expect = 7.9e-20, Sum P(7) = 7.9e-20
Identities = 44/162 (27%), Positives = 82/162 (50%)
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
++V R + +GD + +NR PT H+ S+QA V ++ ++++ C +ADFDGD ++
Sbjct: 536 KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARVLPEEKVLRLHYANCKAYNADFDGDEMN 595
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF--KKYFLD 445
+PQS +AE L ++Q L +G L D ++S ++ F ++ +++
Sbjct: 596 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFNREQYME 655
Query: 446 KAF---TQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
F T ++ L P PA+ K WT Q++ ++L
Sbjct: 656 LVFRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 692
Score = 98 (39.6 bits), Expect = 7.9e-20, Sum P(7) = 7.9e-20
Identities = 28/90 (31%), Positives = 47/90 (52%)
Query: 13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
++ GI FG+ + +E+ S+ S + + L NP + GL L G +S C T +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSKEVCSTCVQD 70
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
C GH G+I+LP+ +Y+P +L L +
Sbjct: 71 FTNCSGHLGHIDLPLTVYNPLLFDKLYLLL 100
Score = 94 (38.1 bits), Expect = 7.9e-20, Sum P(7) = 7.9e-20
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
LEK LF + G +++RSVI D Y NEIG+P A ++T+ + V N+ L
Sbjct: 421 LEKKDGLFRKHMMGKRVDYAARSVICPDMYISTNEIGIPMVFATKLTYPQPVTPWNVQEL 480
Query: 300 QELVDN 305
++ V N
Sbjct: 481 RQAVIN 486
Score = 92 (37.4 bits), Expect = 7.9e-20, Sum P(7) = 7.9e-20
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G + G F G+ P E H ++ RE +V ++ S G L + ++ L +V+ YD TVR
Sbjct: 949 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1008
Query: 737 NVCSNSIIQFDY 748
+ S++QF Y
Sbjct: 1009 D-SDGSVVQFLY 1019
Score = 65 (27.9 bits), Expect = 3.0e-19, Sum P(6) = 3.0e-19
Identities = 27/105 (25%), Positives = 40/105 (38%)
Query: 1154 WLE-NKQENANWDSEA-DCRKSSEDKWE------KLGTSLEKPSSGWRTEGAWGKSSDDK 1205
W E ++Q + +A C S W + + EK + E W ++
Sbjct: 1124 WAELDEQSRRKYQKKAAPCPDPSLSVWRPDIYFASVSETFEKKMDDYSCE--WAAQAERS 1181
Query: 1206 LEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTE 1250
EK+G S + W S CD E VG AA+S E T+
Sbjct: 1182 YEKSGL-SLDSLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQ 1225
Score = 64 (27.6 bits), Expect = 7.9e-20, Sum P(7) = 7.9e-20
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 1156 ENKQENANWDSEADCRKSSEDKWEK----LGTSLEKPSSGWRTEGAWGKSSDDKLEKAGS 1211
E ++E ++DSE + K E+K E+ GT L++ + EG W + ++ G+
Sbjct: 1419 EKQEEEVDYDSEEEEEKEEEEKEEEDIQEEGTGLKEGVQQEQEEGGW---APEESSLPGA 1475
Query: 1212 PSRKP 1216
P +P
Sbjct: 1476 PLTQP 1480
Score = 50 (22.7 bits), Expect = 7.9e-20, Sum P(7) = 7.9e-20
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
SL GE VG+LAA ++ P+ + L++
Sbjct: 1203 SLCDPGEAVGLLAAQSIGEPSTQMTLNT 1230
Score = 50 (22.7 bits), Expect = 9.0e-18, Sum P(6) = 9.0e-18
Identities = 25/90 (27%), Positives = 39/90 (43%)
Query: 1334 ASWDKSSEVTLEKVAAPAENP-LSGWGTEAQDSG-------KSSDWS-EWKDHANATASW 1384
A D+ S +K AAP +P LS W + + K D+S EW A A S+
Sbjct: 1125 AELDEQSRRKYQKKAAPCPDPSLSVWRPDIYFASVSETFEKKMDDYSCEWA--AQAERSY 1182
Query: 1385 GRNG-SEENSGWDTKASWKTKALDKLDDVG 1413
++G S ++ + W+ D + VG
Sbjct: 1183 EKSGLSLDSLRTLLQLKWQRSLCDPGEAVG 1212
Score = 38 (18.4 bits), Expect = 7.9e-20, Sum P(7) = 7.9e-20
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 1441 SANEKSIVHQIGGWNVPD 1458
S NEK +V G N+P+
Sbjct: 1567 SKNEKELVLNTEGINLPE 1584
>UNIPROTKB|B9ZVN9 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AC009309 PANTHER:PTHR19376:SF11 HGNC:HGNC:17264
HOGENOM:HOG000205401 ChiTaRS:POLR1A EMBL:AC012511 IPI:IPI00916060
ProteinModelPortal:B9ZVN9 STRING:B9ZVN9 Ensembl:ENST00000409681
ArrayExpress:B9ZVN9 Bgee:B9ZVN9 Uniprot:B9ZVN9
Length = 1659
Score = 138 (53.6 bits), Expect = 1.0e-19, Sum P(6) = 1.0e-19
Identities = 42/157 (26%), Positives = 77/157 (49%)
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
++V R + +GD + +NR PT H+ S+QA + ++ ++++ C +ADFDGD ++
Sbjct: 536 KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 595
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQ 451
+PQS +AE L ++Q L +G L D ++S M + F + +
Sbjct: 596 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYME 655
Query: 452 LAMFALSP-LPRPAL---SKARCSARWTALQILQSVL 484
L L+ + R L S + WT Q++ ++L
Sbjct: 656 LVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLL 692
Score = 101 (40.6 bits), Expect = 1.0e-19, Sum P(6) = 1.0e-19
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
++ GI FG+ + +E+ S+ S + + L NP GL L G +S C T +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
C GH G+IELP+ +Y+P +L L +
Sbjct: 71 FSNCSGHLGHIELPLTVYNPLLFDKLYLLL 100
Score = 97 (39.2 bits), Expect = 1.0e-19, Sum P(6) = 1.0e-19
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
LEK LF + G +++RSVI D Y NEIG+P A ++T+ + V N+ L
Sbjct: 421 LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 480
Query: 300 QELVDN 305
++ V N
Sbjct: 481 RQAVIN 486
Score = 92 (37.4 bits), Expect = 1.0e-19, Sum P(6) = 1.0e-19
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G + G F G+ P E H ++ RE +V ++ S G L + ++ L +V+ YD TVR
Sbjct: 949 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1008
Query: 737 NVCSNSIIQFDY 748
+ S++QF Y
Sbjct: 1009 D-SDGSVVQFLY 1019
Score = 57 (25.1 bits), Expect = 1.0e-19, Sum P(6) = 1.0e-19
Identities = 43/182 (23%), Positives = 72/182 (39%)
Query: 1282 KSSGDRQENVGGSASKPLSGWGAKA-SWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSS 1340
K+S R N + + L G S G+ D+ EE A+ +AS K
Sbjct: 1360 KASAFRNVNTRRATQRDLDNAGELGRSRGEQEGDEEEEGHIVDAEAEEG-DADASDAKRK 1418
Query: 1341 EVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKAS 1400
E E+V +E E + G+ +D + ++ N R G+ + D + +
Sbjct: 1419 EKQEEEVDYESEE-------EEEREGEENDDEDMQEERNPH----REGARKTQEQDEEVT 1467
Query: 1401 WKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWE----DSSKPSANEKSIVHQIGGWNV 1456
K + D+ S V S GA ++TKG + + + NEK +V G N+
Sbjct: 1468 VKLPLMKINFDMSSLVV--SLAHGA-VIYATKGITRCLLNETTNNKNEKELVLNTEGINL 1524
Query: 1457 PD 1458
P+
Sbjct: 1525 PE 1526
Score = 50 (22.7 bits), Expect = 1.0e-19, Sum P(6) = 1.0e-19
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
SL GE VG+LAA ++ P+ + L++
Sbjct: 1203 SLCEPGEAVGLLAAQSIGEPSTQMTLNT 1230
Score = 49 (22.3 bits), Expect = 1.3e-19, Sum P(6) = 1.3e-19
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1222 EASWGESSCDKWENVGSPAAKSFSEWGTE 1250
+ W S C+ E VG AA+S E T+
Sbjct: 1197 QLKWQRSLCEPGEAVGLLAAQSIGEPSTQ 1225
Score = 40 (19.1 bits), Expect = 5.7e-05, Sum P(5) = 5.7e-05
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 285 ITFEERVNVHNINYLQELVDNKLCLTYS------DGSSSYSLREGSKGHT 328
+ F+E VN H Y E+ NK C+ + + S ++ G+KG T
Sbjct: 863 LKFKEEVN-H---YSNEI--NKACMPFGLHRQFPENSLQMMVQSGAKGST 906
>RGD|620824 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISO;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IDA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:620824
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 KO:K02999 PANTHER:PTHR19376:SF11 CTD:25885
HOGENOM:HOG000205401 HOVERGEN:HBG017741 OrthoDB:EOG41VK23
EMBL:AF025425 IPI:IPI00199160 PIR:T14103 RefSeq:NP_113960.1
UniGene:Rn.24877 ProteinModelPortal:O54889 STRING:O54889
PhosphoSite:O54889 PRIDE:O54889 GeneID:83581 KEGG:rno:83581
UCSC:RGD:620824 InParanoid:O54889 NextBio:616111
ArrayExpress:O54889 Genevestigator:O54889 Uniprot:O54889
Length = 1716
Score = 146 (56.5 bits), Expect = 1.5e-19, Sum P(6) = 1.5e-19
Identities = 43/162 (26%), Positives = 83/162 (51%)
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
+VV R + +GD + +NR PT H+ S+QA ++ ++ ++++ C +ADFDGD ++
Sbjct: 543 KVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMN 602
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF--KKYFLD 445
+PQS +AE L ++Q L +G L D ++S ++ F ++ +++
Sbjct: 603 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 662
Query: 446 ---KAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
+ T ++ L P PA+ K WT Q++ ++L
Sbjct: 663 LVYRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 699
Score = 99 (39.9 bits), Expect = 1.5e-19, Sum P(6) = 1.5e-19
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
++ GI FG+ + +E+ S+ S + + L NP GL L G +S C T +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTCVQD 70
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
C GH G+I+LP+ +Y+P +L L +
Sbjct: 71 FNNCSGHLGHIDLPLTVYNPLLFDKLYLLL 100
Score = 97 (39.2 bits), Expect = 1.5e-19, Sum P(6) = 1.5e-19
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
LEK LF + G +++RSVI D Y NEIG+P A ++T+ + V N+ L
Sbjct: 428 LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 487
Query: 300 QELVDN 305
++ V N
Sbjct: 488 RQAVIN 493
Score = 92 (37.4 bits), Expect = 1.5e-19, Sum P(6) = 1.5e-19
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G + G F G+ P E H ++ RE +V ++ S G L + ++ L +VI YD TVR
Sbjct: 956 GFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVR 1015
Query: 737 NVCSNSIIQFDY 748
+ S++QF Y
Sbjct: 1016 D-SDGSVVQFLY 1026
Score = 53 (23.7 bits), Expect = 2.4e-19, Sum P(5) = 2.4e-19
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 1222 EASWGESSCDKWENVGSPAAKSFSEWGTE 1250
+ W S CD E VG AA+S E T+
Sbjct: 1204 QLKWQRSLCDPGEAVGLLAAQSIGEPSTQ 1232
Score = 50 (22.7 bits), Expect = 1.5e-19, Sum P(6) = 1.5e-19
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
SL GE VG+LAA ++ P+ + L++
Sbjct: 1210 SLCDPGEAVGLLAAQSIGEPSTQMTLNT 1237
Score = 50 (22.7 bits), Expect = 1.5e-19, Sum P(6) = 1.5e-19
Identities = 26/83 (31%), Positives = 36/83 (43%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
HL L+A+ M G N G ++ S L Q+ F + F+ ++A D L
Sbjct: 1636 HLSLVADYMCFEGVYKPLNRFGIQSSSSPLQ-QMTFETSFQFL-----KQATMMGSHDEL 1689
Query: 1057 SSVVAACSWGKHVAVGTGSRFDL 1079
S A GK V GTG F+L
Sbjct: 1690 KSPSACLVVGKVVKGGTGL-FEL 1711
Score = 37 (18.1 bits), Expect = 6.7e-14, Sum P(5) = 6.7e-14
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 1078 DLLWQTENEEFNQDD 1092
D +W+ + +FN D
Sbjct: 855 DAIWRKDQRDFNMID 869
>UNIPROTKB|G3V7B7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CH473957
GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 UniGene:Rn.24877
Ensembl:ENSRNOT00000013587 Uniprot:G3V7B7
Length = 1716
Score = 146 (56.5 bits), Expect = 1.5e-19, Sum P(6) = 1.5e-19
Identities = 43/162 (26%), Positives = 83/162 (51%)
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
+VV R + +GD + +NR PT H+ S+QA ++ ++ ++++ C +ADFDGD ++
Sbjct: 543 KVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMN 602
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF--KKYFLD 445
+PQS +AE L ++Q L +G L D ++S ++ F ++ +++
Sbjct: 603 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 662
Query: 446 ---KAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
+ T ++ L P PA+ K WT Q++ ++L
Sbjct: 663 LVYRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 699
Score = 99 (39.9 bits), Expect = 1.5e-19, Sum P(6) = 1.5e-19
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
++ GI FG+ + +E+ S+ S + + L NP GL L G +S C T +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTCVQD 70
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
C GH G+I+LP+ +Y+P +L L +
Sbjct: 71 FNNCSGHLGHIDLPLTVYNPLLFDKLYLLL 100
Score = 97 (39.2 bits), Expect = 1.5e-19, Sum P(6) = 1.5e-19
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
LEK LF + G +++RSVI D Y NEIG+P A ++T+ + V N+ L
Sbjct: 428 LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 487
Query: 300 QELVDN 305
++ V N
Sbjct: 488 RQAVIN 493
Score = 92 (37.4 bits), Expect = 1.5e-19, Sum P(6) = 1.5e-19
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G + G F G+ P E H ++ RE +V ++ S G L + ++ L +VI YD TVR
Sbjct: 956 GFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVR 1015
Query: 737 NVCSNSIIQFDY 748
+ S++QF Y
Sbjct: 1016 D-SDGSVVQFLY 1026
Score = 53 (23.7 bits), Expect = 2.4e-19, Sum P(5) = 2.4e-19
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 1222 EASWGESSCDKWENVGSPAAKSFSEWGTE 1250
+ W S CD E VG AA+S E T+
Sbjct: 1204 QLKWQRSLCDPGEAVGLLAAQSIGEPSTQ 1232
Score = 50 (22.7 bits), Expect = 1.5e-19, Sum P(6) = 1.5e-19
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
SL GE VG+LAA ++ P+ + L++
Sbjct: 1210 SLCDPGEAVGLLAAQSIGEPSTQMTLNT 1237
Score = 50 (22.7 bits), Expect = 1.5e-19, Sum P(6) = 1.5e-19
Identities = 26/83 (31%), Positives = 36/83 (43%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
HL L+A+ M G N G ++ S L Q+ F + F+ ++A D L
Sbjct: 1636 HLSLVADYMCFEGVYKPLNRFGIQSSSSPLQ-QMTFETSFQFL-----KQATMMGSHDEL 1689
Query: 1057 SSVVAACSWGKHVAVGTGSRFDL 1079
S A GK V GTG F+L
Sbjct: 1690 KSPSACLVVGKVVKGGTGL-FEL 1711
>ZFIN|ZDB-GENE-030131-5286 [details] [associations]
symbol:polr1a "polymerase (RNA) I polypeptide A"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 ZFIN:ZDB-GENE-030131-5286
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861 EMBL:AL929267
EMBL:CU694378 IPI:IPI00934858 Ensembl:ENSDART00000114501
ArrayExpress:E7F710 Bgee:E7F710 Uniprot:E7F710
Length = 1710
Score = 152 (58.6 bits), Expect = 2.7e-19, Sum P(6) = 2.7e-19
Identities = 34/104 (32%), Positives = 59/104 (56%)
Query: 332 PGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDC 390
P ++V+R I +GD + +NR PT H+ S+QA + + ++++ C +ADFDGD
Sbjct: 539 PMKIVNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDE 598
Query: 391 IHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS 434
++ +PQS ++AE L S ++Q L +G L D ++S
Sbjct: 599 MNAHFPQSELSRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVS 642
Score = 95 (38.5 bits), Expect = 2.7e-19, Sum P(6) = 2.7e-19
Identities = 30/90 (33%), Positives = 46/90 (51%)
Query: 13 QIVGIRFGLATQKEICTASISDCSISHASQLAN----PFLGL-PLEFGKCES---CGT-- 62
++ G+ FGL + E T +S +I++ L N GL L G ++ C T
Sbjct: 11 RLEGMSFGLFSADE--TRKLSVKTITNPQLLDNVGNAAANGLYDLALGPADNKEICSTCM 68
Query: 63 SEPGKCEGHFGYIELPIPIYHPSHISELKL 92
+ C GHFG+IELP+P+Y+P +L L
Sbjct: 69 QDFSSCPGHFGHIELPLPVYNPLFFDKLYL 98
Score = 92 (37.4 bits), Expect = 2.7e-19, Sum P(6) = 2.7e-19
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
LEK LF + G +++RSVI D Y NEIG+P A ++T+ + V N+ +
Sbjct: 427 LEKKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEM 486
Query: 300 QELVDN 305
++ V N
Sbjct: 487 RQAVLN 492
Score = 91 (37.1 bits), Expect = 2.7e-19, Sum P(6) = 2.7e-19
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G + G F G+ P E H ++ RE +V ++ S G L + ++ L +V+ YD TVR
Sbjct: 945 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVR 1004
Query: 737 NVCSNSIIQFDY 748
+ S++QF Y
Sbjct: 1005 D-SDGSVVQFLY 1015
Score = 57 (25.1 bits), Expect = 2.7e-19, Sum P(6) = 2.7e-19
Identities = 30/83 (36%), Positives = 37/83 (44%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
HL L+A+ M G N G ++ S L Q+ F T F K ++A D L
Sbjct: 1630 HLSLVADYMCFEGVYKPLNRFGIQSNSSPLQ-QMTFE--TSF---KFLKQATMLGSYDKL 1683
Query: 1057 SSVVAACSWGKHVAVGTGSRFDL 1079
SS A GK V GTG FDL
Sbjct: 1684 SSPSACLVVGKVVKGGTGI-FDL 1705
Score = 51 (23.0 bits), Expect = 8.4e-19, Sum P(6) = 8.4e-19
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1222 EASWGESSCDKWENVGSPAAKSFSEWGTE 1250
+ W + CD E VG AA+S E T+
Sbjct: 1193 QLKWQRALCDPGEAVGLVAAQSIGEPSTQ 1221
Score = 45 (20.9 bits), Expect = 8.4e-19, Sum P(6) = 8.4e-19
Identities = 23/114 (20%), Positives = 46/114 (40%)
Query: 1283 SSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETT--VAKPSSAWGTEASWDKSS 1340
+ DR + GG A + ++ + + ++ E+ E V ++ +A+ K
Sbjct: 1372 NDNDRDTSDGG-ADREVNSLNRSHVFRCNDDNGGEDAENERIVDDEANEGDADATDSKRK 1430
Query: 1341 EVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSG 1394
E E+V +E G E ++ + + S+ +T S R SE+ G
Sbjct: 1431 EKQEEEVDYESEEGEEGSDQEQEEVAEEQEASQEVSEEGSTESQQRVNSEQPKG 1484
Score = 44 (20.5 bits), Expect = 2.7e-19, Sum P(6) = 2.7e-19
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
+L GE VG++AA ++ P+ + L++
Sbjct: 1199 ALCDPGEAVGLVAAQSIGEPSTQMTLNT 1226
>MGI|MGI:1096397 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009303 "rRNA transcription" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 MGI:MGI:1096397 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086
CleanEx:MM_RPA1 Reactome:REACT_86751 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 CTD:25885 HOGENOM:HOG000205401
HOVERGEN:HBG017741 OrthoDB:EOG41VK23 ChiTaRS:POLR1A EMBL:AF000938
EMBL:BC053744 IPI:IPI00313726 PIR:T13961 RefSeq:NP_033114.3
UniGene:Mm.135581 ProteinModelPortal:O35134 SMR:O35134
STRING:O35134 PhosphoSite:O35134 PaxDb:O35134 PRIDE:O35134
Ensembl:ENSMUST00000055296 GeneID:20019 KEGG:mmu:20019
UCSC:uc009chv.2 GeneTree:ENSGT00550000074861 InParanoid:O35134
NextBio:297531 Bgee:O35134 Genevestigator:O35134
GermOnline:ENSMUSG00000049553 Uniprot:O35134
Length = 1717
Score = 142 (55.0 bits), Expect = 4.9e-19, Sum P(6) = 4.9e-19
Identities = 43/162 (26%), Positives = 82/162 (50%)
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
+VV R + +GD + +NR PT H+ S+QA + ++ ++++ C +ADFDGD ++
Sbjct: 543 KVVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 602
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF--KKYFLD 445
+PQS +AE L ++Q L +G L D ++S ++ F ++ +++
Sbjct: 603 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 662
Query: 446 ---KAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
+ T ++ L P PA+ K WT Q++ ++L
Sbjct: 663 LVYRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 699
Score = 98 (39.6 bits), Expect = 4.9e-19, Sum P(6) = 4.9e-19
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
++ GI FG+ + +E+ S+ S + + L NP GL L G +S C T +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQD 70
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
C GH G+I+LP+ +Y+P +L L +
Sbjct: 71 FNNCSGHLGHIDLPLTVYNPFLFDKLYLLL 100
Score = 97 (39.2 bits), Expect = 4.9e-19, Sum P(6) = 4.9e-19
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
LEK LF + G +++RSVI D Y NEIG+P A ++T+ + V N+ L
Sbjct: 428 LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 487
Query: 300 QELVDN 305
++ V N
Sbjct: 488 RQAVIN 493
Score = 92 (37.4 bits), Expect = 4.9e-19, Sum P(6) = 4.9e-19
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G + G F G+ P E H ++ RE +V ++ S G L + ++ L +VI YD TVR
Sbjct: 956 GFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVR 1015
Query: 737 NVCSNSIIQFDY 748
+ S++QF Y
Sbjct: 1016 D-SDGSVVQFLY 1026
Score = 53 (23.7 bits), Expect = 3.7e-18, Sum P(6) = 3.7e-18
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 1222 EASWGESSCDKWENVGSPAAKSFSEWGTE 1250
+ W S CD E VG AA+S E T+
Sbjct: 1204 QLKWQRSLCDPGEAVGLLAAQSIGEPSTQ 1232
Score = 50 (22.7 bits), Expect = 4.9e-19, Sum P(6) = 4.9e-19
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
SL GE VG+LAA ++ P+ + L++
Sbjct: 1210 SLCDPGEAVGLLAAQSIGEPSTQMTLNT 1237
Score = 50 (22.7 bits), Expect = 4.9e-19, Sum P(6) = 4.9e-19
Identities = 26/83 (31%), Positives = 36/83 (43%)
Query: 997 HLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNL 1056
HL L+A+ M G N G ++ S L Q+ F + F+ ++A D L
Sbjct: 1637 HLSLVADYMCFEGVYKPLNRFGIQSSSSPLQ-QMTFETSFQFL-----KQATMMGSHDEL 1690
Query: 1057 SSVVAACSWGKHVAVGTGSRFDL 1079
S A GK V GTG F+L
Sbjct: 1691 KSPSACLVVGKVVKGGTGL-FEL 1712
Score = 38 (18.4 bits), Expect = 3.7e-18, Sum P(6) = 3.7e-18
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 1441 SANEKSIVHQIGGWNVPD 1458
S NEK +V G N+P+
Sbjct: 1567 SKNEKELVLNTEGINLPE 1584
Score = 37 (18.1 bits), Expect = 2.7e-17, Sum P(7) = 2.7e-17
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 1156 ENKQENANWDSEADCRKSSEDKWEKLG 1182
E ++E +++SE + + E++ ++ G
Sbjct: 1426 EKQEEEVDYESEEEGEEEEEEEVQEEG 1452
>UNIPROTKB|F1SVC3 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
OMA:CLLNETT PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:CU570839 Ensembl:ENSSSCT00000009008 Uniprot:F1SVC3
Length = 1723
Score = 141 (54.7 bits), Expect = 5.0e-19, Sum P(6) = 5.0e-19
Identities = 42/162 (25%), Positives = 82/162 (50%)
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
++V R + +GD + +NR PT H+ S+QA + ++ ++++ C +ADFDGD ++
Sbjct: 540 KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 599
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF--KKYFLD 445
+PQS +AE L ++Q L +G L D ++S ++ F ++ +++
Sbjct: 600 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 659
Query: 446 ---KAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
+ T ++ L P PA+ K WT Q++ ++L
Sbjct: 660 LVYRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 696
Score = 99 (39.9 bits), Expect = 5.0e-19, Sum P(6) = 5.0e-19
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
LEK LF + G +++RSVI D Y NEIG+P A ++T+ + V N+ L
Sbjct: 425 LEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 484
Query: 300 QELVDNKLCLTYSDGSSSYSLREGSK 325
++ V N T G+S +GS+
Sbjct: 485 RQAVINGP--TVHPGASMVINEDGSR 508
Score = 97 (39.2 bits), Expect = 5.0e-19, Sum P(6) = 5.0e-19
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
++ GI FG+ + +E+ S+ S + + L NP GL L G +S C T +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPPDSKEVCSTCVQD 70
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
C GH G+IELP+ +Y+P +L L +
Sbjct: 71 FNNCPGHLGHIELPLTVYNPLLFDKLYLLL 100
Score = 91 (37.1 bits), Expect = 5.0e-19, Sum P(6) = 5.0e-19
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G + G F G+ P E H ++ RE +V ++ S G L + ++ L +V+ YD TVR
Sbjct: 953 GFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1012
Query: 737 NVCSNSIIQFDY 748
+ S++QF Y
Sbjct: 1013 D-SDGSVVQFLY 1023
Score = 57 (25.1 bits), Expect = 5.0e-19, Sum P(6) = 5.0e-19
Identities = 26/105 (24%), Positives = 40/105 (38%)
Query: 1154 WLE-NKQENANWDSEA-DCRKSSEDKWE------KLGTSLEKPSSGWRTEGAWGKSSDDK 1205
W E ++Q + +A C S W + + EK + E W ++
Sbjct: 1128 WSELDEQSRRKYQKKAAPCPDPSLSVWRPDIYFASVSETFEKKMDDYSLE--WAAQAEKS 1185
Query: 1206 LEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTE 1250
EK+ S + + W S CD E VG AA+S E T+
Sbjct: 1186 HEKS-ELSLERLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQ 1229
Score = 50 (22.7 bits), Expect = 3.0e-18, Sum P(7) = 3.0e-18
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
SL GE VG+LAA ++ P+ + L++
Sbjct: 1207 SLCDPGEAVGLLAAQSIGEPSTQMTLNT 1234
Score = 44 (20.5 bits), Expect = 5.0e-19, Sum P(6) = 5.0e-19
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 1391 ENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGARED---FSTKGWE----DSSKPSAN 1443
E+ +DT+AS + KL + + SS V + ++TKG + + S N
Sbjct: 1516 EDYQYDTEASLWCQVTVKLPLMKVNFDMSSLVVSLAQGTVVYATKGITRCLLNETTNSKN 1575
Query: 1444 EKSIVHQIGGWNVPD 1458
EK +V G N+P+
Sbjct: 1576 EKELVLNTEGINLPE 1590
Score = 42 (19.8 bits), Expect = 7.9e-19, Sum P(6) = 7.9e-19
Identities = 18/74 (24%), Positives = 30/74 (40%)
Query: 1458 DAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQ 1517
D +G DD G E +G D+S K+K + E S + + + ++Q
Sbjct: 1393 DREG-DDEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEDEEKEEDEEKEDEDIQ 1451
Query: 1518 VWGQSRKEPFKKNR 1531
G R E F + +
Sbjct: 1452 EEGSIRGEGFHQEQ 1465
Score = 42 (19.8 bits), Expect = 3.0e-18, Sum P(7) = 3.0e-18
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 1156 ENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEG 1196
E ++E +++SE D K ED+ EK +++ S R EG
Sbjct: 1423 EKQEEEVDYESEEDEEKE-EDE-EKEDEDIQEEGS-IRGEG 1460
>UNIPROTKB|O95602 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase I subunit RPA1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=NAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=TAS] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=TAS]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=TAS] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CH471053
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0009303
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 EMBL:U33460 EMBL:AH007280 EMBL:AK302458
EMBL:BC117173 EMBL:BC126303 EMBL:AL117467 IPI:IPI00031960
PIR:T17252 RefSeq:NP_056240.2 UniGene:Hs.531818
ProteinModelPortal:O95602 SMR:O95602 DIP:DIP-27537N IntAct:O95602
MINT:MINT-111492 STRING:O95602 PhosphoSite:O95602
SWISS-2DPAGE:O95602 PaxDb:O95602 PRIDE:O95602
Ensembl:ENST00000263857 GeneID:25885 KEGG:hsa:25885 UCSC:uc002sqs.3
CTD:25885 GeneCards:GC02M086253 H-InvDB:HIX0002233 HGNC:HGNC:17264
HPA:CAB010145 neXtProt:NX_O95602 PharmGKB:PA134891380
HOGENOM:HOG000205401 HOVERGEN:HBG017741 InParanoid:O95602
OrthoDB:EOG41VK23 ChiTaRS:POLR1A GenomeRNAi:25885 NextBio:47304
PMAP-CutDB:O95602 ArrayExpress:O95602 Bgee:O95602 CleanEx:HS_POLR1A
Genevestigator:O95602 GermOnline:ENSG00000068654 Uniprot:O95602
Length = 1720
Score = 138 (53.6 bits), Expect = 2.1e-18, Sum P(5) = 2.1e-18
Identities = 42/157 (26%), Positives = 77/157 (49%)
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
++V R + +GD + +NR PT H+ S+QA + ++ ++++ C +ADFDGD ++
Sbjct: 536 KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 595
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKK-YFLDKAFTQQ 451
+PQS +AE L ++Q L +G L D ++S M + F + +
Sbjct: 596 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYME 655
Query: 452 LAMFALSP-LPRPAL---SKARCSARWTALQILQSVL 484
L L+ + R L S + WT Q++ ++L
Sbjct: 656 LVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLL 692
Score = 101 (40.6 bits), Expect = 2.1e-18, Sum P(5) = 2.1e-18
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
++ GI FG+ + +E+ S+ S + + L NP GL L G +S C T +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
C GH G+IELP+ +Y+P +L L +
Sbjct: 71 FSNCSGHLGHIELPLTVYNPLLFDKLYLLL 100
Score = 97 (39.2 bits), Expect = 2.1e-18, Sum P(5) = 2.1e-18
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
LEK LF + G +++RSVI D Y NEIG+P A ++T+ + V N+ L
Sbjct: 421 LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 480
Query: 300 QELVDN 305
++ V N
Sbjct: 481 RQAVIN 486
Score = 92 (37.4 bits), Expect = 2.1e-18, Sum P(5) = 2.1e-18
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G + G F G+ P E H ++ RE +V ++ S G L + ++ L +V+ YD TVR
Sbjct: 949 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1008
Query: 737 NVCSNSIIQFDY 748
+ S++QF Y
Sbjct: 1009 D-SDGSVVQFLY 1019
Score = 50 (22.7 bits), Expect = 2.1e-18, Sum P(5) = 2.1e-18
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
SL GE VG+LAA ++ P+ + L++
Sbjct: 1203 SLCEPGEAVGLLAAQSIGEPSTQMTLNT 1230
Score = 49 (22.3 bits), Expect = 2.6e-18, Sum P(5) = 2.6e-18
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1222 EASWGESSCDKWENVGSPAAKSFSEWGTE 1250
+ W S C+ E VG AA+S E T+
Sbjct: 1197 QLKWQRSLCEPGEAVGLLAAQSIGEPSTQ 1225
>UNIPROTKB|J9P5G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K02999 PANTHER:PTHR19376:SF11
CTD:25885 GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
RefSeq:XP_532976.3 Ensembl:ENSCAFT00000047500 GeneID:475766
KEGG:cfa:475766 Uniprot:J9P5G4
Length = 1717
Score = 142 (55.0 bits), Expect = 3.0e-18, Sum P(6) = 3.0e-18
Identities = 44/162 (27%), Positives = 81/162 (50%)
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
++V R + +GD + +NR PT H+ S+QA + ++ ++++ C +ADFDGD ++
Sbjct: 536 KIVCRHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMN 595
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF---KKYF- 443
+PQS +AE L ++Q L +G L D ++S ++ F ++Y
Sbjct: 596 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 655
Query: 444 -LDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
L + T ++ L P PA+ K WT Q++ ++L
Sbjct: 656 LLYRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 692
Score = 101 (40.6 bits), Expect = 3.0e-18, Sum P(6) = 3.0e-18
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
++ GI FG+ + +E+ S+ S + + L NP GL L G +S C T +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
C GH G+IELP+ +Y+P +L L +
Sbjct: 71 FNNCSGHLGHIELPLTVYNPLLFDKLYLLL 100
Score = 95 (38.5 bits), Expect = 3.0e-18, Sum P(6) = 3.0e-18
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
LEK LF + G +++RSVI D Y NEIG+P A ++T+ + V N+ L
Sbjct: 421 LEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 480
Query: 300 QELVDN 305
++ V N
Sbjct: 481 RQAVIN 486
Score = 92 (37.4 bits), Expect = 3.0e-18, Sum P(6) = 3.0e-18
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G + G F G+ P E H ++ RE +V ++ S G L + ++ L +V+ YD TVR
Sbjct: 949 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1008
Query: 737 NVCSNSIIQFDY 748
+ S++QF Y
Sbjct: 1009 D-SDGSVVQFLY 1019
Score = 53 (23.7 bits), Expect = 3.0e-18, Sum P(6) = 3.0e-18
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 1222 EASWGESSCDKWENVGSPAAKSFSEWGTE 1250
+ W S CD E VG AA+S E T+
Sbjct: 1197 QLKWQRSLCDPGEAVGLLAAQSIGEPSTQ 1225
Score = 50 (22.7 bits), Expect = 5.8e-18, Sum P(6) = 5.8e-18
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
SL GE VG+LAA ++ P+ + L++
Sbjct: 1203 SLCDPGEAVGLLAAQSIGEPSTQMTLNT 1230
Score = 38 (18.4 bits), Expect = 3.0e-18, Sum P(6) = 3.0e-18
Identities = 33/158 (20%), Positives = 66/158 (41%)
Query: 1310 KSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSS 1369
+S E+++EE + S K+ E E + P ++P + T+ + S ++
Sbjct: 1428 ESEEEEVEEENEDEDMQEEEHISGNSAHKAQEQNEEVGSGPEDSPPATPLTQPRKSTQNR 1487
Query: 1370 D--WSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGARE 1427
+ +E K+ A + E+ +DT+ S + KL + + +S V +
Sbjct: 1488 EPQGAEAKER-RVQAVRESHPFIEDYQYDTEESLWCQVTVKLPLMKINFDMTSLVMSLAQ 1546
Query: 1428 D---FSTKGWE----DSSKPSANEKSIVHQIGGWNVPD 1458
++TKG + + NEK +V G N+P+
Sbjct: 1547 SAVVYATKGITRCLLNETTNKKNEKELVLNTEGINLPE 1584
>UNIPROTKB|E2R0G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
Ensembl:ENSCAFT00000012228 Uniprot:E2R0G4
Length = 1746
Score = 142 (55.0 bits), Expect = 3.3e-18, Sum P(6) = 3.3e-18
Identities = 44/162 (27%), Positives = 81/162 (50%)
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
++V R + +GD + +NR PT H+ S+QA + ++ ++++ C +ADFDGD ++
Sbjct: 548 KIVCRHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMN 607
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF---KKYF- 443
+PQS +AE L ++Q L +G L D ++S ++ F ++Y
Sbjct: 608 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 667
Query: 444 -LDKAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
L + T ++ L P PA+ K WT Q++ ++L
Sbjct: 668 LLYRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 704
Score = 101 (40.6 bits), Expect = 3.3e-18, Sum P(6) = 3.3e-18
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 13 QIVGIRFGLATQKEICTASI-SDCSISHASQLANPFL-GL-PLEFGKCES---CGT--SE 64
++ GI FG+ + +E+ S+ S + + L NP GL L G +S C T +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70
Query: 65 PGKCEGHFGYIELPIPIYHPSHISELKLTM 94
C GH G+IELP+ +Y+P +L L +
Sbjct: 71 FNNCSGHLGHIELPLTVYNPLLFDKLYLLL 100
Score = 95 (38.5 bits), Expect = 3.3e-18, Sum P(6) = 3.3e-18
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
LEK LF + G +++RSVI D Y NEIG+P A ++T+ + V N+ L
Sbjct: 433 LEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 492
Query: 300 QELVDN 305
++ V N
Sbjct: 493 RQAVIN 498
Score = 92 (37.4 bits), Expect = 3.3e-18, Sum P(6) = 3.3e-18
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G + G F G+ P E H ++ RE +V ++ S G L + ++ L +V+ YD TVR
Sbjct: 961 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1020
Query: 737 NVCSNSIIQFDY 748
+ S++QF Y
Sbjct: 1021 D-SDGSVVQFLY 1031
Score = 53 (23.7 bits), Expect = 3.3e-18, Sum P(6) = 3.3e-18
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 1222 EASWGESSCDKWENVGSPAAKSFSEWGTE 1250
+ W S CD E VG AA+S E T+
Sbjct: 1209 QLKWQRSLCDPGEAVGLLAAQSIGEPSTQ 1237
Score = 50 (22.7 bits), Expect = 6.5e-18, Sum P(6) = 6.5e-18
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 757 SLFPAGEPVGVLAATAMSNPAYKAVLDS 784
SL GE VG+LAA ++ P+ + L++
Sbjct: 1215 SLCDPGEAVGLLAAQSIGEPSTQMTLNT 1242
Score = 38 (18.4 bits), Expect = 3.3e-18, Sum P(6) = 3.3e-18
Identities = 33/158 (20%), Positives = 66/158 (41%)
Query: 1310 KSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSS 1369
+S E+++EE + S K+ E E + P ++P + T+ + S ++
Sbjct: 1457 ESEEEEVEEENEDEDMQEEEHISGNSAHKAQEQNEEVGSGPEDSPPATPLTQPRKSTQNR 1516
Query: 1370 D--WSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGARE 1427
+ +E K+ A + E+ +DT+ S + KL + + +S V +
Sbjct: 1517 EPQGAEAKER-RVQAVRESHPFIEDYQYDTEESLWCQVTVKLPLMKINFDMTSLVMSLAQ 1575
Query: 1428 D---FSTKGWE----DSSKPSANEKSIVHQIGGWNVPD 1458
++TKG + + NEK +V G N+P+
Sbjct: 1576 SAVVYATKGITRCLLNETTNKKNEKELVLNTEGINLPE 1613
>DICTYBASE|DDB_G0275759 [details] [associations]
symbol:rpa1 "RNA polymerase I, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0275759 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR EMBL:AAFI02000013 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 RefSeq:XP_643519.1 HSSP:P04050
ProteinModelPortal:Q86H36 STRING:Q86H36 PRIDE:Q86H36
EnsemblProtists:DDB0216292 GeneID:8620100 KEGG:ddi:DDB_G0275759
KO:K02999 OMA:CLLNETT ProtClustDB:CLSZ2497252
PANTHER:PTHR19376:SF11 Uniprot:Q86H36
Length = 1615
Score = 160 (61.4 bits), Expect = 3.0e-17, Sum P(5) = 3.0e-17
Identities = 52/166 (31%), Positives = 82/166 (49%)
Query: 287 FEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTV 346
F E N H IN +E + ++ L S +L S H + V+R ++ GD V
Sbjct: 501 FIEDENGHLINLSKESQEKRIAL-------SKTLLT-SHPHAPRGVNKKVYRHLLSGDYV 552
Query: 347 FINRPPTTHKHSLQALSVYV--HDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAE 404
NR PT HK + V V ++ T++++ C +ADFDGD +++ +PQSL A AE
Sbjct: 553 LANRQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAE 612
Query: 405 VLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQ 450
+ E+ + Q L NG L D +L+ ++ K+ D FT+
Sbjct: 613 IREICANNYQYLVPRNGAPLRGLIQDHILTGVLLTKR---DTLFTK 655
Score = 97 (39.2 bits), Expect = 8.1e-11, Sum P(5) = 8.1e-11
Identities = 62/251 (24%), Positives = 99/251 (39%)
Query: 130 KKLAGKGYFPQ---DGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEII 186
KK G+ + + D + PV P P+ +G S + K ++K ++I
Sbjct: 320 KKNVGRQFTKESNVDSLFMRVFPVTPARYRPPNFVNG--RRSEHPQNSHYKGMVKSNKMI 377
Query: 187 RSSRSGTPNFESQEVESN-DLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE 245
R S V S DLQ+ V + + +S + G+ Q LE
Sbjct: 378 RQSIDAGEGKAKFLVNSVCDLQMHVNNMYD--NSKSNSNTNEVANGIKQI--------LE 427
Query: 246 KMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQE 301
K LF + G +++R+VI+ D NE+GVP A+ +TF + V N N L +
Sbjct: 428 KKEGLFRKHMMGKRVNYAARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQ 487
Query: 302 LVDNKLCLTYSDGSSSY---SLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHS 358
V N G Y + E GH + +RI T+ T+H H+
Sbjct: 488 AVIN--------GPEQYPGANFIEDENGHLINLSKESQEKRIALSKTLL-----TSHPHA 534
Query: 359 LQALS--VYVH 367
+ ++ VY H
Sbjct: 535 PRGVNKKVYRH 545
Score = 88 (36.0 bits), Expect = 3.0e-17, Sum P(5) = 3.0e-17
Identities = 27/88 (30%), Positives = 39/88 (44%)
Query: 5 TSSTILEGQIVGIRFGLATQKEICTASISDC-SISHASQLANPFLG-L--PL--EFGKCE 58
+ S +++ +I + F T ++ S+ I L P G L P G E
Sbjct: 4 SQSALIKEEISSVSFQFYTSDDVRKLSVKQIVEIESFDMLGGPVPGGLHDPALGPTGPAE 63
Query: 59 SCGTSEPG--KCEGHFGYIELPIPIYHP 84
C T +C GHFG+IEL IP Y+P
Sbjct: 64 RCATCSLDFIECPGHFGHIELAIPCYNP 91
Score = 87 (35.7 bits), Expect = 3.0e-17, Sum P(5) = 3.0e-17
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 677 GLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDGTVR 736
G + F G+ P + H ++ RE ++ ++ S G L + L+ L + + YD TVR
Sbjct: 943 GFVMDRFLTGVRPQDYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVQYDNTVR 1002
Query: 737 NVCSNSIIQFDY 748
S+IQF+Y
Sbjct: 1003 E-SDGSVIQFNY 1013
Score = 80 (33.2 bits), Expect = 3.0e-17, Sum P(5) = 3.0e-17
Identities = 38/128 (29%), Positives = 60/128 (46%)
Query: 954 KLSGVLANMIYPVLLETIIKENWWVRQRLSASVTMV--AKGVL--KEHLILLANSMTCAG 1009
K+ + N IY +L + ++ RQ +++ ++ V A G+ K HLILL G
Sbjct: 1491 KIDEIYTNDIYAILQKYGVEA---CRQAVTSEISNVFAAYGISVDKRHLILL-------G 1540
Query: 1010 DLVGFNSGGYKALSRS--LNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGK 1067
D + F GGY+AL+R N PF + + KA+ D ++S + G+
Sbjct: 1541 DYMTFE-GGYRALNRIGIENNTSPFQKMSFETTFSFLSKASLMGDYDTVTSPSSRIVLGQ 1599
Query: 1068 HVAVGTGS 1075
V GTGS
Sbjct: 1600 IVKNGTGS 1607
Score = 49 (22.3 bits), Expect = 3.0e-17, Sum P(5) = 3.0e-17
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 755 SHSLFPAGEPVGVLAATAMSNPAYKAVLDS 784
S S+ GE VG+L A ++ P+ + L++
Sbjct: 1130 SRSMVSPGESVGLLCAQSIGEPSTQMTLNT 1159
Score = 46 (21.3 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 13/67 (19%), Positives = 30/67 (44%)
Query: 1308 WGKSSEDKLEEVETTVAKPSSAW-GTEASWDKSSEVTLEK----VAAPAENPLSGWGTEA 1362
W +++ + + KP W G + +++T+ + + AP++ P WGT+
Sbjct: 667 WSVNTKHPIVTPPPCILKPVPLWSGKQLISAALNQLTIGRAPLNLEAPSKIPTKMWGTKG 726
Query: 1363 QDSGKSS 1369
+ + S
Sbjct: 727 LEITRDS 733
Score = 39 (18.8 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 495 YLIKKSEVLKGDFDRDTIPS---VINEIV 520
+L K S L GD+D T PS V+ +IV
Sbjct: 1575 FLSKAS--LMGDYDTVTSPSSRIVLGQIV 1601
>TAIR|locus:2179979 [details] [associations]
symbol:KTF1 "AT5G04290" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006306 "DNA methylation"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IMP] InterPro:IPR017071 EMBL:CP002688
GO:GO:0006357 GO:GO:0030422 GO:GO:0006306 GO:GO:0032784
InterPro:IPR005824 SMART:SM00739 InterPro:IPR005100
PANTHER:PTHR11125:SF7 Pfam:PF03439 IPI:IPI00544683
RefSeq:NP_196049.1 UniGene:At.54715 ProteinModelPortal:F4JW79
SMR:F4JW79 IntAct:F4JW79 PRIDE:F4JW79 EnsemblPlants:AT5G04290.1
GeneID:830308 KEGG:ath:AT5G04290 OMA:SSWGKKD Uniprot:F4JW79
Length = 1493
Score = 270 (100.1 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 140/523 (26%), Positives = 200/523 (38%)
Query: 1064 SWGKHVAVGTGSRFDLLWQTE--NEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEV 1121
SWGK G GS + W + N ++ DGV S G C G+
Sbjct: 853 SWGKK---G-GSDGESSWGNKDGNSSASKKDGVSWGQQDKGSDESKGGSAWSNQC-GDFG 907
Query: 1122 DGLEDEFD--WSLSPEHNLCSDK--PVFEDLVEDQSWLENKQENANWDSEAD---CRKSS 1174
G + + W+ S E + + K P + + SW + A+W + D K
Sbjct: 908 SGKKKDGSSGWNKSAEDSNANSKGVPDWGQPNDGSSWGKKGDGAASWGKKDDGGSWGKKD 967
Query: 1175 EDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWE 1234
+ + G+S K G + +G G S + K + S +K G G+ SWG+ D
Sbjct: 968 DGNKDDGGSSWGKKDDGQKDDG--GSSWEKKFDGGSSWGKKDDG-GS--SWGKK--DDGG 1020
Query: 1235 NVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSG---WGSE----ASWGKSS-GD 1286
++ S WG E G +G K + S K G WG + +SWGK G
Sbjct: 1021 SLWGKKDDGGSSWGKEDDGGSLWGKKDDGESSWGKKDDGESSWGKKDDGGSSWGKKDEGG 1080
Query: 1287 RQENV---GGSASKPLSGWGAKAS---WGKSSEDKLEEVETTVAKPS--SAWGTE----- 1333
E GG G G + +G+ S E +KPS S+WG +
Sbjct: 1081 YSEQTFDRGGRGFGGRRGGGRRGGRDQFGRGSSFGNSEDPAPWSKPSGGSSWGKQDGDGG 1140
Query: 1334 -ASWDKSSEVTLEKVAAPAENPL-SGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEE 1391
+SW K ++ +N + S WG + SG S W + D A +SWG+ +
Sbjct: 1141 GSSWGKENDAGGGSSWGKQDNGVGSSWGKQNDGSGGGSSWGKQND-AGGGSSWGK----Q 1195
Query: 1392 NSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFST-KGWEDSSKPSANEKSIVHQ 1450
+SG D +SW K D G +S S WG + + S W S S Q
Sbjct: 1196 DSGGDG-SSW-----GKQDGGG----DSGSAWGKQNNTSGGSSWGKQSDAGGGS-SWGKQ 1244
Query: 1451 IGG-----WNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESP---QPASS-- 1500
GG W D G S WGKQ T N SSWGKQ + S Q
Sbjct: 1245 DGGGGGSSWGKQDGGGGSGSAWGKQNETSNG-----SSWGKQNDSGGGSSWGKQDGGGGG 1299
Query: 1501 NAWDLP-DATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKG 1542
++W D GGS Q G +P+ ++ G GE +G
Sbjct: 1300 SSWGKQNDGGGGSSWGKQ--GDGGSKPWNEHSGGGRGFGERRG 1340
Score = 256 (95.2 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 145/540 (26%), Positives = 206/540 (38%)
Query: 1054 DNLSSVVAACSWGKHVAVGTGSRFDL-LWQTENEEF--NQDDGVDVYDFL-HMVRSSTGI 1109
D +S V A SW K A T + DL W T N+ D V+ L SS
Sbjct: 791 DTSASNVEASSWEKQGA-STSNVADLGSWGTHGGSSGGNKQDEDSVWGKLCEASESSQKK 849
Query: 1110 EELDTGCLGEEVDGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENANWDSEA- 1168
EE G G G + E W ++ S K +D+ E+K +A W ++
Sbjct: 850 EESSWGKKG----GSDGESSWGNKDGNSSASKKDGVSWGQQDKGSDESKGGSA-WSNQCG 904
Query: 1169 DC----RKSSEDKWEKLGTSLEKPSSG---WR--TEGA-WGKSSDD-----KLEKAGSPS 1213
D +K W K S G W +G+ WGK D K + GS
Sbjct: 905 DFGSGKKKDGSSGWNKSAEDSNANSKGVPDWGQPNDGSSWGKKGDGAASWGKKDDGGSWG 964
Query: 1214 RKPSGWGTE--ASWGESSCDKWENVGSPAAKSF---SEWGTEASWGKSFGDKPENVSPAA 1268
+K G + +SWG+ + ++ GS K F S WG + G S+G K + S
Sbjct: 965 KKDDGNKDDGGSSWGKKDDGQKDDGGSSWEKKFDGGSSWGKKDDGGSSWGKKDDGGSLWG 1024
Query: 1269 KTSSG---WGSE----ASWGKSSGDRQENVGGSASKPLSGWGAK----ASWGKSSEDKLE 1317
K G WG E + WGK D E+ G S WG K +SWGK E
Sbjct: 1025 KKDDGGSSWGKEDDGGSLWGKK--DDGESSWGKKDDGESSWGKKDDGGSSWGKKDEGGYS 1082
Query: 1318 EVETTVAKPSSAWGTEASWDKSSEVTLEKVAA--PAENPLSGWGTEAQDSGKSSDWSEWK 1375
E +T G + + ++ +E+P + W ++ SG SS W + +
Sbjct: 1083 E-QTFDRGGRGFGGRRGGGRRGGRDQFGRGSSFGNSEDP-APW---SKPSGGSS-WGK-Q 1135
Query: 1376 DHANATASWGR-NGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFST-KG 1433
D +SWG+ N + S W + + + K +D GS S WG + D
Sbjct: 1136 DGDGGGSSWGKENDAGGGSSWGKQDNGVGSSWGKQND-GSG---GGSSWGKQNDAGGGSS 1191
Query: 1434 WEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENE 1493
W + S + S W D G S WGKQ N G SSWGKQ
Sbjct: 1192 W--GKQDSGGDGS------SWGKQDGGGDSGSAWGKQN---NTSG--GSSWGKQSDAGGG 1238
Query: 1494 SP---QPASS--NAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSG---EWKGKKN 1545
S Q ++W D GGS + WG+ + + G + SG W GK++
Sbjct: 1239 SSWGKQDGGGGGSSWGKQDGGGGSGS---AWGKQNETSNGSSWGKQNDSGGGSSW-GKQD 1294
Score = 239 (89.2 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 119/442 (26%), Positives = 162/442 (36%)
Query: 1137 NLCSDKPVFEDLVEDQSWLENKQE-NANWDSEADCRKSSE-DKWEKLGTSLEKPSSGWRT 1194
N C D + W ++ ++ NAN D + ++ W K G S G +
Sbjct: 901 NQCGDFGSGKKKDGSSGWNKSAEDSNANSKGVPDWGQPNDGSSWGKKGDGAA--SWGKKD 958
Query: 1195 EG-AWGKSSDDKLEKAGSP-SRKPSGWGTEASWGESSCDKWENVGSPAAKSF---SEWGT 1249
+G +WGK D + GS +K G + G SS +K + GS K S WG
Sbjct: 959 DGGSWGKKDDGNKDDGGSSWGKKDDGQKDD---GGSSWEKKFDGGSSWGKKDDGGSSWGK 1015
Query: 1250 EASWGKSFGDKPENVSPAAKTSSG---WGS----EASWGKSSGDRQENVGGSASKPLSGW 1302
+ G +G K + S K G WG E+SWGK D E+ G S W
Sbjct: 1016 KDDGGSLWGKKDDGGSSWGKEDDGGSLWGKKDDGESSWGKK--DDGESSWGKKDDGGSSW 1073
Query: 1303 GAKASWGKSSEDKLEEVETTVA--KPSSAWGTEASWDKSSEVTLEKVAAPAENPLSG--W 1358
G K G S E + + G + + S + AP P G W
Sbjct: 1074 GKKDEGGYS-EQTFDRGGRGFGGRRGGGRRGGRDQFGRGSSFGNSEDPAPWSKPSGGSSW 1132
Query: 1359 GTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTK--ASWKTKALDKLDDVGSAV 1416
G + D G SS W + D A +SWG+ + S W + S + K +D G
Sbjct: 1133 GKQDGDGGGSS-WGKEND-AGGGSSWGKQDNGVGSSWGKQNDGSGGGSSWGKQNDAGGGS 1190
Query: 1417 E-------NSSSVWGAREDFSTKG--WEDSSKPSANEK-SIVHQIGG---WNVPDAKGTD 1463
S WG ++ G W + S GG W D G
Sbjct: 1191 SWGKQDSGGDGSSWGKQDGGGDSGSAWGKQNNTSGGSSWGKQSDAGGGSSWGKQDGGGGG 1250
Query: 1464 DSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLP-DATGGSETEMQVWGQS 1522
S WGKQ + G S+WGKQ T N S +W D+ GGS Q G
Sbjct: 1251 SS-WGKQ----DGGGGSGSAWGKQNETSNGS-------SWGKQNDSGGGSSWGKQDGGGG 1298
Query: 1523 RKEPFKKNRGWASSSGEWKGKK 1544
K+N G SS W GK+
Sbjct: 1299 GSSWGKQNDGGGGSS--W-GKQ 1317
Score = 219 (82.2 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 109/396 (27%), Positives = 152/396 (38%)
Query: 1150 EDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKA 1209
E W +K + + AD S+ W KP+S G W +A
Sbjct: 728 EKNPWGGSKPTSDVSPTVADDNTSA---WANAAAE-NKPASASDQPGGWNPWGKTPASEA 783
Query: 1210 GSPSRKPSGWG-TEASWGESSCDKWENVGSPAAK--SFSEWGTEASWGKSFGDKPENVSP 1266
G+ S GWG T AS E+S WE G+ + WGT G S G+K + S
Sbjct: 784 GTVS----GWGDTSASNVEAS--SWEKQGASTSNVADLGSWGTHG--GSSGGNKQDEDSV 835
Query: 1267 -----AAKTSSGWGSEASWGKSSG-DRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVE 1320
A SS E+SWGK G D + + G + SWG+ +DK +
Sbjct: 836 WGKLCEASESSQKKEESSWGKKGGSDGESSWGNKDGNSSASKKDGVSWGQ--QDKGSDE- 892
Query: 1321 TTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSS----DW----- 1371
+K SAW + D S ++ SGW A+DS +S DW
Sbjct: 893 ---SKGGSAWSNQCG-DFGS--------GKKKDGSSGWNKSAEDSNANSKGVPDWGQPND 940
Query: 1372 -SEWKDHANATASWGRN---GS----EENSGWDTKASWKTKALDKLDDVGSAVE---NSS 1420
S W + ASWG+ GS ++ + D +SW K + DD GS+ E +
Sbjct: 941 GSSWGKKGDGAASWGKKDDGGSWGKKDDGNKDDGGSSWGKKDDGQKDDGGSSWEKKFDGG 1000
Query: 1421 SVWGAREDFSTKGWEDSSKPSANEKSIVHQIGG--WNVPDAKGTDDSCWGKQKLTENAKG 1478
S WG ++D + W K GG W D G S WGK K
Sbjct: 1001 SSWGKKDDGGSS-W--GKKDDGGSLWGKKDDGGSSWGKEDDGG---SLWGK-------KD 1047
Query: 1479 TDDSSWGKQKHTENE-SPQPASSNAWDLPDATGGSE 1513
+SSWGK+ E+ + ++W D G SE
Sbjct: 1048 DGESSWGKKDDGESSWGKKDDGGSSWGKKDEGGYSE 1083
Score = 214 (80.4 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 97/377 (25%), Positives = 146/377 (38%)
Query: 1162 ANWDSEADCRKSSEDKWEK----LGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPS 1217
++W E D S W K +G+S K + G +WGK +D GS K
Sbjct: 1142 SSWGKENDAGGGSS--WGKQDNGVGSSWGKQNDGSGGGSSWGKQND---AGGGSSWGKQD 1196
Query: 1218 GWGTEASWGE--------SSCDKWENV--GSPAAKSFSEWGTEASWGKSFGDKPENVSPA 1267
G +SWG+ S+ K N GS K S+ G +SWGK G S
Sbjct: 1197 SGGDGSSWGKQDGGGDSGSAWGKQNNTSGGSSWGKQ-SDAGGGSSWGKQDGGG--GGSSW 1253
Query: 1268 AKTSSGWGSEASWGKSS--------GDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEV 1319
K G GS ++WGK + G + ++ GGS+ G G +SWGK ++
Sbjct: 1254 GKQDGGGGSGSAWGKQNETSNGSSWGKQNDSGGGSSWGKQDGGGGGSSWGKQNDGGGGSS 1313
Query: 1320 ETTVAKPSSA-WGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHA 1378
S W + + SG G + D G+SS W D+
Sbjct: 1314 WGKQGDGGSKPWNEHSGGGRGFGERRGGGGFRGGRNQSGRGGRSFDGGRSSSWKT--DNQ 1371
Query: 1379 NATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSS 1438
T W S+++ G D K W +D ++ + SS G ++ + W+ +S
Sbjct: 1372 ENT--WK---SDQSGGSDWKKGWG-------EDSNNSKPSGSSAGGCAGNWPS--WDTNS 1417
Query: 1439 KPSANEKSIVHQIGGWNVP-DAKGTDDS--CWGKQKLTE-NAKGTDDSSWGKQKHTENES 1494
K N+K W D TD++ W K+ + G D++WG + T +
Sbjct: 1418 KKETNDKPGDDSKSAWGTSNDQVNTDNNNDSWNKKPNNDVGTSGEADNAWGGK--TNAVA 1475
Query: 1495 PQPASSNAWDLPDATGG 1511
P P+ S AW D G
Sbjct: 1476 PSPSGSAAWGTGDKKTG 1492
Score = 203 (76.5 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 97/386 (25%), Positives = 138/386 (35%)
Query: 1187 KPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSE 1246
KPS G +WGK D GS K + G +SWG+ VGS K
Sbjct: 1125 KPSGG----SSWGKQDGDG---GGSSWGKENDAGGGSSWGKQD----NGVGSSWGKQNDG 1173
Query: 1247 WGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGD--------RQENV-GGSASK 1297
G +SWGK D S + S G GS SWGK G +Q N GGS+
Sbjct: 1174 SGGGSSWGKQ-NDAGGGSSWGKQDSGGDGS--SWGKQDGGGDSGSAWGKQNNTSGGSSWG 1230
Query: 1298 PLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSG 1357
S G +SWGK ++ K G+ ++W K +E + N S
Sbjct: 1231 KQSDAGGGSSWGKQDGGG---GGSSWGKQDGGGGSGSAWGKQNETS---------NG-SS 1277
Query: 1358 WGTEAQDSGKSSDWSEWKDHANATASWGR-NGSEENSGWDTKASWKTKALDKLDDVGSAV 1416
WG + DSG S W + +D +SWG+ N S W + +K ++ G
Sbjct: 1278 WGKQ-NDSGGGSSWGK-QDGGGGGSSWGKQNDGGGGSSWGKQGDGGSKPWNEHSGGGRGF 1335
Query: 1417 ENSSSVWGAR--EDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTD-DSCWGKQKLT 1473
G R + S +G ++ +Q W + G+D WG+
Sbjct: 1336 GERRGGGGFRGGRNQSGRGGRSFDGGRSSSWKTDNQENTWKSDQSGGSDWKKGWGEDSNN 1395
Query: 1474 ENAKGTDDS-------SWGKQKHTE-NESPQPASSNAWDLPDATGGSETEMQVWGQSRKE 1525
G+ SW E N+ P S +AW + ++ W K+
Sbjct: 1396 SKPSGSSAGGCAGNWPSWDTNSKKETNDKPGDDSKSAWGTSNDQVNTDNNNDSWN---KK 1452
Query: 1526 PFKKNRGWASSSGEWKGKKNRPPRSP 1551
P + W GK N SP
Sbjct: 1453 PNNDVGTSGEADNAWGGKTNAVAPSP 1478
Score = 197 (74.4 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 103/397 (25%), Positives = 152/397 (38%)
Query: 1157 NKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEG-AWGKSSDDKLEKA-GSP-S 1213
N ++ A W + S W K + S W E A G SS K + GS
Sbjct: 1116 NSEDPAPWS-----KPSGGSSWGKQDG--DGGGSSWGKENDAGGGSSWGKQDNGVGSSWG 1168
Query: 1214 RKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFG--DKPENVSPAAKTS 1271
++ G G +SWG+ + D GS K S G +SWGK G D TS
Sbjct: 1169 KQNDGSGGGSSWGKQN-DA--GGGSSWGKQDSG-GDGSSWGKQDGGGDSGSAWGKQNNTS 1224
Query: 1272 SG--WGSEA-SWGKSSGDRQENVGGSAS--KPLSGWGAKASWGKSSEDKLEEV--ETTVA 1324
G WG ++ + G SS +Q+ GG +S K G G+ ++WGK +E + +
Sbjct: 1225 GGSSWGKQSDAGGGSSWGKQDGGGGGSSWGKQDGGGGSGSAWGKQNETSNGSSWGKQNDS 1284
Query: 1325 KPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASW 1384
S+WG + S + S WG Q G S W+E H+ +
Sbjct: 1285 GGGSSWGKQDGGGGGSSWGKQNDGGGG----SSWGK--QGDGGSKPWNE---HSGGGRGF 1335
Query: 1385 G-RNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFST---KGW-EDS-- 1437
G R G G ++ ++ D +N + W + + + KGW EDS
Sbjct: 1336 GERRGGGGFRGGRNQSGRGGRSFDGGRSSSWKTDNQENTWKSDQSGGSDWKKGWGEDSNN 1395
Query: 1438 SKPSANEKS-IVHQIGGWNVPDAKGTDD-------SCWGKQKLTENAKGTDDSSWGKQKH 1489
SKPS + W+ K T+D S WG N +DS W K+ +
Sbjct: 1396 SKPSGSSAGGCAGNWPSWDTNSKKETNDKPGDDSKSAWGTSNDQVNTDNNNDS-WNKKPN 1454
Query: 1490 TENESPQPASSNAWD-LPDATGGSETEMQVWGQSRKE 1525
+ + A NAW +A S + WG K+
Sbjct: 1455 NDVGTSGEAD-NAWGGKTNAVAPSPSGSAAWGTGDKK 1490
Score = 37 (18.1 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 390 CI-HLFYP-QSLAAKAEVLELFSVE 412
C+ H F + + K E++ +FSV+
Sbjct: 164 CLMHKFVELRKIGTKLEIISVFSVD 188
>UNIPROTKB|F1LQN7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF05000 SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 PANTHER:PTHR19376:SF11 IPI:IPI00389616
Ensembl:ENSRNOT00000013417 ArrayExpress:F1LQN7 Uniprot:F1LQN7
Length = 1011
Score = 146 (56.5 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 43/162 (26%), Positives = 83/162 (51%)
Query: 334 QVVHRRIMDGDTVFINRPPTTHKHSLQALSVYV-HDDHTVKINPLICGPLSADFDGDCIH 392
+VV R + +GD + +NR PT H+ S+QA ++ ++ ++++ C +ADFDGD ++
Sbjct: 564 KVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMN 623
Query: 393 LFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS-----LKVMF--KKYFLD 445
+PQS +AE L ++Q L +G L D ++S ++ F ++ +++
Sbjct: 624 AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 683
Query: 446 ---KAFTQQLAMFALSPLPRPALSKARCSARWTALQILQSVL 484
+ T ++ L P PA+ K WT Q++ ++L
Sbjct: 684 LVYRGLTDKVGRVKLFP---PAILKP--FPLWTGKQVVSTLL 720
Score = 97 (39.2 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 244 LEKMRTLFIRKGSG----FSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYL 299
LEK LF + G +++RSVI D Y NEIG+P A ++T+ + V N+ L
Sbjct: 449 LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 508
Query: 300 QELVDN 305
++ V N
Sbjct: 509 RQAVIN 514
Score = 82 (33.9 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 28 CTASISDCSIS---HASQLANPFL-GL-PLEFGKCES---CGT--SEPGKCEGHFGYIEL 77
C +S SI+ + L NP GL L G +S C T + C GH G+I+L
Sbjct: 45 CIRKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTCVQDFNNCSGHLGHIDL 104
Query: 78 PIPIYHPSHISELKLTM 94
P+ +Y+P +L L +
Sbjct: 105 PLTVYNPLLFDKLYLLL 121
Score = 44 (20.5 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 17 IRFGLATQKEICTASISD---CSISHASQLANPFLGL-PLEFGK 56
+ G A KE+C+ + D CS H + P PL F K
Sbjct: 74 LALGPADSKEVCSTCVQDFNNCS-GHLGHIDLPLTVYNPLLFDK 116
Score = 40 (19.1 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 137 YFPQDGYILEYLPVPPNCLSVPDI 160
Y GY+ YL VP N + P I
Sbjct: 23 YHASLGYMAGYLTVPSNKVIKPCI 46
>UNIPROTKB|G3N258 [details] [associations]
symbol:TNRC6A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035278 "negative regulation of translation involved in
gene silencing by miRNA" evidence=IEA] [GO:0035068
"micro-ribonucleoprotein complex" evidence=IEA] [GO:0009267
"cellular response to starvation" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009267 GO:GO:0000932
GO:GO:0035068 GO:GO:0035278 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 OMA:TQTFNSG EMBL:DAAA02057793
Ensembl:ENSBTAT00000064228 Uniprot:G3N258
Length = 1901
Score = 220 (82.5 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 133/532 (25%), Positives = 200/532 (37%)
Query: 1070 AVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTG--IEEL----DTGCLGEEVDG 1123
A G G +F W++ EE +Q + V + TG +E TG L E+ G
Sbjct: 571 ANGNGKKFTNGWKSTEEE-DQGSAASQTNEQSSVWAKTGGTVESEGSTESTGRLEEKATG 629
Query: 1124 LEDEFDWSLSPEHNLCSDKPVFEDL----VEDQSWLENK-QENANWDSEADCR--KSSED 1176
D +H L DL + + W + ++N WD+E R + +++
Sbjct: 630 ENQSRDRRKMDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDN 689
Query: 1177 KWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPS-GWGTEASWGESSCDKWEN 1235
E G+S + + SS+D +G KP+ WG S G S WE+
Sbjct: 690 GTEAWGSSATQTFNSGACVDKTSPSSNDTSSVSGWGDPKPALRWGD--SKGSSCQGGWED 747
Query: 1236 --VGSPAAKSFSEWGT----EASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQE 1289
+ KS ++WG +++W S +K + K++ GW A G + G+R
Sbjct: 748 DSAATGMVKS-NQWGNCKEEKSAWNDSQKNK-QGWGDGQKSNQGWSVSA--GDNWGERS- 802
Query: 1290 NVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSS-AWGTE------ASWDKSSEV 1342
N G A+K K+S G S D+ + K SS WG + WD+SS+
Sbjct: 803 NHWGEANK-------KSSSGGSDSDRSVSGWNELGKTSSFTWGNNINPNNSSGWDESSKP 855
Query: 1343 TLEKVAA--PAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWG---RNGSEENSGWDT 1397
+ P N GWG DS K +W + SWG G +GW
Sbjct: 856 NPSQGWGDPPKSNQSLGWG----DSSKPVSSPDWNKQQDIVGSWGIPPATGKPPGTGW-L 910
Query: 1398 KASWKTKALDKLDDVGSAVENSSSVWGARE-DFSTKGWEDSSKPSANEKSIVHQIGGWNV 1456
A ++ + G + S+ E D T W D SK N K++ + NV
Sbjct: 911 GGPMPAPAKEE-EPTGWEEPSPESIRRKMEIDDGTSAWGDPSK--YNYKNV--NMWNKNV 965
Query: 1457 PDAKG-TDDSCWGKQKLTE-----NAKGTDDSSWGKQKHTENESPQPASSN---AWDLPD 1507
P+ +D Q L N + + S WG + E +P N AW P
Sbjct: 966 PNGSSRSDQQAQVHQLLPSAGTISNKEASSGSGWG-EPWGETSTPATTVDNGTSAWGKPV 1024
Query: 1508 ATGGSETEMQVWGQSRKEPFKKNRGWASSS-GEWKGKKNRPPR-SPGVVNDD 1557
+G S WG+ + W SSS G K+ P G DD
Sbjct: 1025 DSGPS------WGEPIAAASSTST-WGSSSVGPQTLNKSGPKSMQDGWCGDD 1069
Score = 161 (61.7 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 88/393 (22%), Positives = 149/393 (37%)
Query: 1177 KWEKL-GTSLEKPSS---GWRTEGAWGKSSDDKLEKAGSPSRKPSG-W----GTEASWGE 1227
+W KL G S+ G + W + ++ A S + + S W GT S G
Sbjct: 557 EWNKLPGNQHSSDSANGNGKKFTNGWKSTEEEDQGSAASQTNEQSSVWAKTGGTVESEGS 616
Query: 1228 S-SCDKWENVGSPAAKSFSEWGTEA-SWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSG 1285
+ S + E + +S + + +S ++ + + P ++SGWG ++
Sbjct: 617 TESTGRLEEKATGENQSRDRRKMDQHTLLQSIVNRTD-LDPRVLSNSGWGQTPIKQNTAW 675
Query: 1286 DRQENVGGS--ASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVT 1343
D + + G WG+ A+ +S +++ + SS G W +
Sbjct: 676 DTETSPRGERKTDNGTEAWGSSATQTFNSGACVDKTSPSSNDTSSVSG----WG-DPKPA 730
Query: 1344 LEKVAAPAENPLSGWGTEAQDSG--KSSDW-------SEWKDHANATASWGRNGSEENSG 1394
L + + GW ++ +G KS+ W S W D WG +G + N G
Sbjct: 731 LRWGDSKGSSCQGGWEDDSAATGMVKSNQWGNCKEEKSAWNDSQKNKQGWG-DGQKSNQG 789
Query: 1395 WDTKA--SWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSA---NEKSIVH 1449
W A +W ++ + G A + SSS G+ D S GW + K S+ +
Sbjct: 790 WSVSAGDNWGERS----NHWGEANKKSSS-GGSDSDRSVSGWNELGKTSSFTWGNNINPN 844
Query: 1450 QIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDAT 1509
GW+ +K WG + + G DSS K + + + Q +W +P AT
Sbjct: 845 NSSGWD-ESSKPNPSQGWGDPPKSNQSLGWGDSS--KPVSSPDWNKQQDIVGSWGIPPAT 901
Query: 1510 GGSETEMQVW-GQSRKEPFKKNR--GWASSSGE 1539
G + W G P K+ GW S E
Sbjct: 902 G--KPPGTGWLGGPMPAPAKEEEPTGWEEPSPE 932
Score = 154 (59.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 106/453 (23%), Positives = 161/453 (35%)
Query: 1139 CSDK--PVFEDLVEDQSWLENKQENANW-DSE-ADCRKSSEDKWEKLGTSLEKPSSGW-- 1192
C DK P D W + K W DS+ + C+ ED + T + K S+ W
Sbjct: 707 CVDKTSPSSNDTSSVSGWGDPKPA-LRWGDSKGSSCQGGWED--DSAATGMVK-SNQWGN 762
Query: 1193 --RTEGAWGKSSDDKLEKAGSPSRKPSGWGTEA--SWGESSCDKWENV-------GSPAA 1241
+ AW S +K + G + GW A +WGE S + W GS +
Sbjct: 763 CKEEKSAWNDSQKNK-QGWGDGQKSNQGWSVSAGDNWGERS-NHWGEANKKSSSGGSDSD 820
Query: 1242 KSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEAS------WGKSSGDRQENVGGSA 1295
+S S W E SF N++P SSGW + WG Q G +
Sbjct: 821 RSVSGWN-ELGKTSSF-TWGNNINP--NNSSGWDESSKPNPSQGWGDPPKSNQSLGWGDS 876
Query: 1296 SKPLSG--WGAK----ASWGKSSEDKLEEVETTVAKPSSAWGTE---ASWDKSSEVTLEK 1346
SKP+S W + SWG + P A E W++ S ++ +
Sbjct: 877 SKPVSSPDWNKQQDIVGSWGIPPATGKPPGTGWLGGPMPAPAKEEEPTGWEEPSPESIRR 936
Query: 1347 VAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKAL 1406
++ S WG D S++ ++ N W +N +S D +A + L
Sbjct: 937 -KMEIDDGTSAWG----------DPSKY-NYKNVNM-WNKNVPNGSSRSDQQAQVH-QLL 982
Query: 1407 DKLDDVGSAVENSSSVWGAR-EDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDS 1465
+ + +S S WG + ST + SA K V W P A + S
Sbjct: 983 PSAGTISNKEASSGSGWGEPWGETSTPATTVDNGTSAWGKP-VDSGPSWGEPIAAASSTS 1041
Query: 1466 CWGKQKL---TENAKGTDDSSWGKQKHTENESPQPASS-NAWDLPDATGGSETEMQVWGQ 1521
WG + T N G G ++ P P + W+ + + E+ +W
Sbjct: 1042 TWGSSSVGPQTLNKSGPKSMQDG---WCGDDMPLPGNRPTGWEEEE-----DVEIGMWNS 1093
Query: 1522 SRKEPFKKNRGWAS-----SSGEWKGKKNRPPR 1549
+ + + W SS GKK R R
Sbjct: 1094 NSSQELNSSLNWPPYTKKMSSKGLSGKKRRRER 1126
Score = 48 (22.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 1519 WGQSRKEPFKKNRGWASS--SGE-WKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLD 1572
W +++ + W GE WKG N P + V S +N + T + +D
Sbjct: 1533 WPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINNLSINTVREVD 1589
Score = 38 (18.4 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 1647 DSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLVDE 1683
D L T SQQ ++ ++SF+ P E
Sbjct: 1400 DPNLLVKQQTPPSQQQSLHQPAMKSFLENVMPHTTPE 1436
>UNIPROTKB|F1MX25 [details] [associations]
symbol:TNRC6A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0031047 SUPFAM:SSF46934 GeneTree:ENSGT00410000025966
InterPro:IPR019486 PANTHER:PTHR31070 Pfam:PF10427 EMBL:DAAA02057793
IPI:IPI00723624 Ensembl:ENSBTAT00000023950 Uniprot:F1MX25
Length = 1851
Score = 218 (81.8 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 127/510 (24%), Positives = 193/510 (37%)
Query: 1070 AVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTG--IEEL----DTGCLGEEVDG 1123
A G G +F W++ EE +Q + V + TG +E TG L E+ G
Sbjct: 564 ANGNGKKFTNGWKSTEEE-DQGSAASQTNEQSSVWAKTGGTVESEGSTESTGRLEEKATG 622
Query: 1124 LEDEFDWSLSPEHNLCSDKPVFEDL----VEDQSWLENK-QENANWDSEADCR--KSSED 1176
D +H L DL + + W + ++N WD+E R + +++
Sbjct: 623 ENQSRDRRKMDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDN 682
Query: 1177 KWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPS-GWGTEASWGESSCDKWEN 1235
E G+S + + SS+D +G KP+ WG S G S WE+
Sbjct: 683 GTEAWGSSATQTFNSGACVDKTSPSSNDTSSVSGWGDPKPALRWGD--SKGSSCQGGWED 740
Query: 1236 --VGSPAAKSFSEWGT----EASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQE 1289
+ KS ++WG +++W S +K + K++ GW A G + G+R
Sbjct: 741 DSAATGMVKS-NQWGNCKEEKSAWNDSQKNK-QGWGDGQKSNQGWSVSA--GDNWGERS- 795
Query: 1290 NVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSS-AWGTE------ASWDKSSEV 1342
N G A+K K+S G S D+ + K SS WG + WD+SS+
Sbjct: 796 NHWGEANK-------KSSSGGSDSDRSVSGWNELGKTSSFTWGNNINPNNSSGWDESSKP 848
Query: 1343 TLEKVAA--PAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWG---RNGSEENSGWDT 1397
+ P N GWG DS K +W + SWG G +GW
Sbjct: 849 NPSQGWGDPPKSNQSLGWG----DSSKPVSSPDWNKQQDIVGSWGIPPATGKPPGTGW-L 903
Query: 1398 KASWKTKALDKLDDVGSAVENSSSVWGARE-DFSTKGWEDSSKPSANEKSIVHQIGGWNV 1456
A ++ + G + S+ E D T W D SK N K++ + NV
Sbjct: 904 GGPMPAPAKEE-EPTGWEEPSPESIRRKMEIDDGTSAWGDPSK--YNYKNV--NMWNKNV 958
Query: 1457 PDAKG-TDDSCWGKQKLTE-----NAKGTDDSSWGKQKHTENESPQPASSN---AWDLPD 1507
P+ +D Q L N + + S WG + E +P N AW P
Sbjct: 959 PNGSSRSDQQAQVHQLLPSAGTISNKEASSGSGWG-EPWGETSTPATTVDNGTSAWGKPV 1017
Query: 1508 ATGGSETEMQVWGQSRKEPFKKNRGWASSS 1537
+G S WG+ + W SSS
Sbjct: 1018 DSGPS------WGEPIAAASSTST-WGSSS 1040
Score = 161 (61.7 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 88/393 (22%), Positives = 149/393 (37%)
Query: 1177 KWEKL-GTSLEKPSS---GWRTEGAWGKSSDDKLEKAGSPSRKPSG-W----GTEASWGE 1227
+W KL G S+ G + W + ++ A S + + S W GT S G
Sbjct: 550 EWNKLPGNQHSSDSANGNGKKFTNGWKSTEEEDQGSAASQTNEQSSVWAKTGGTVESEGS 609
Query: 1228 S-SCDKWENVGSPAAKSFSEWGTEA-SWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSG 1285
+ S + E + +S + + +S ++ + + P ++SGWG ++
Sbjct: 610 TESTGRLEEKATGENQSRDRRKMDQHTLLQSIVNRTD-LDPRVLSNSGWGQTPIKQNTAW 668
Query: 1286 DRQENVGGS--ASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVT 1343
D + + G WG+ A+ +S +++ + SS G W +
Sbjct: 669 DTETSPRGERKTDNGTEAWGSSATQTFNSGACVDKTSPSSNDTSSVSG----WG-DPKPA 723
Query: 1344 LEKVAAPAENPLSGWGTEAQDSG--KSSDW-------SEWKDHANATASWGRNGSEENSG 1394
L + + GW ++ +G KS+ W S W D WG +G + N G
Sbjct: 724 LRWGDSKGSSCQGGWEDDSAATGMVKSNQWGNCKEEKSAWNDSQKNKQGWG-DGQKSNQG 782
Query: 1395 WDTKA--SWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSA---NEKSIVH 1449
W A +W ++ + G A + SSS G+ D S GW + K S+ +
Sbjct: 783 WSVSAGDNWGERS----NHWGEANKKSSS-GGSDSDRSVSGWNELGKTSSFTWGNNINPN 837
Query: 1450 QIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDAT 1509
GW+ +K WG + + G DSS K + + + Q +W +P AT
Sbjct: 838 NSSGWD-ESSKPNPSQGWGDPPKSNQSLGWGDSS--KPVSSPDWNKQQDIVGSWGIPPAT 894
Query: 1510 GGSETEMQVW-GQSRKEPFKKNR--GWASSSGE 1539
G + W G P K+ GW S E
Sbjct: 895 G--KPPGTGWLGGPMPAPAKEEEPTGWEEPSPE 925
Score = 156 (60.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 110/463 (23%), Positives = 170/463 (36%)
Query: 1139 CSDK--PVFEDLVEDQSWLENKQENANW-DSE-ADCRKSSEDKWEKLGTSLEKPSSGW-- 1192
C DK P D W + K W DS+ + C+ ED + T + K S+ W
Sbjct: 700 CVDKTSPSSNDTSSVSGWGDPKPA-LRWGDSKGSSCQGGWED--DSAATGMVK-SNQWGN 755
Query: 1193 --RTEGAWGKSSDDKLEKAGSPSRKPSGWGTEA--SWGESSCDKWENV-------GSPAA 1241
+ AW S +K + G + GW A +WGE S + W GS +
Sbjct: 756 CKEEKSAWNDSQKNK-QGWGDGQKSNQGWSVSAGDNWGERS-NHWGEANKKSSSGGSDSD 813
Query: 1242 KSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEAS------WGKSSGDRQENVGGSA 1295
+S S W E SF N++P SSGW + WG Q G +
Sbjct: 814 RSVSGWN-ELGKTSSF-TWGNNINP--NNSSGWDESSKPNPSQGWGDPPKSNQSLGWGDS 869
Query: 1296 SKPLSG--WGAK----ASWGKSSEDKLEEVETTVAKPSSAWGTE---ASWDKSSEVTLEK 1346
SKP+S W + SWG + P A E W++ S ++ +
Sbjct: 870 SKPVSSPDWNKQQDIVGSWGIPPATGKPPGTGWLGGPMPAPAKEEEPTGWEEPSPESIRR 929
Query: 1347 VAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKAL 1406
++ S WG D S++ ++ N W +N +S D +A + L
Sbjct: 930 -KMEIDDGTSAWG----------DPSKY-NYKNVNM-WNKNVPNGSSRSDQQAQVH-QLL 975
Query: 1407 DKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSC 1466
+ + +S S WG + W ++S P+ ++ + W P G
Sbjct: 976 PSAGTISNKEASSGSGWG-------EPWGETSTPAT---TVDNGTSAWGKPVDSGPS--- 1022
Query: 1467 WGKQKLTENAKGT-DDSSWGKQKHTEN-ESPQ--PAS-SNAW---DLP----DATGGSE- 1513
WG+ ++ T SS G Q ++ +PQ P S + W D+P TG E
Sbjct: 1023 WGEPIAAASSTSTWGSSSVGPQTLNKSVTNPQLGPKSMQDGWCGDDMPLPGNRPTGWEEE 1082
Query: 1514 --TEMQVWGQSRKEPFKKNRGWAS-----SSGEWKGKKNRPPR 1549
E+ +W + + + W SS GKK R R
Sbjct: 1083 EDVEIGMWNSNSSQELNSSLNWPPYTKKMSSKGLSGKKRRRER 1125
Score = 48 (22.0 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 1519 WGQSRKEPFKKNRGWASS--SGE-WKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLD 1572
W +++ + W GE WKG N P + V S +N + T + +D
Sbjct: 1483 WPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINNLSINTVREVD 1539
Score = 38 (18.4 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 1647 DSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLVDE 1683
D L T SQQ ++ ++SF+ P E
Sbjct: 1350 DPNLLVKQQTPPSQQQSLHQPAMKSFLENVMPHTTPE 1386
>UNIPROTKB|J9PAE6 [details] [associations]
symbol:TNRC6A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR026804 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0031047
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 EMBL:AAEX03004442 EMBL:AAEX03004443 EMBL:AAEX03004444
Ensembl:ENSCAFT00000045503 Uniprot:J9PAE6
Length = 1882
Score = 195 (73.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 131/532 (24%), Positives = 194/532 (36%)
Query: 1070 AVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTG--IEEL----DTGCLGEEVDG 1123
A G G +F W++ EE +Q + V + TG +E TG L E+ G
Sbjct: 599 ANGNGKKFTNGWKSTEEE-DQASAASQTTEQNSVWAKTGGTVESEGSTESTGRLEEKATG 657
Query: 1124 LEDEFDWSLSPEHNLCSDKPVFEDL----VEDQSWLENK-QENANWDSEADCR--KSSED 1176
D +H L DL + + W + ++N WD+E R + +++
Sbjct: 658 ENQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDN 717
Query: 1177 KWEKLGTSLEKP-SSGWRTEGAWGKSSDDKLEKAGSPSRKPS-GWGTEASWGESSCDKWE 1234
E G+S + +SG T+ +S+D +G KP+ WG S G S WE
Sbjct: 718 GTEAWGSSATQTFNSGACTDKT-SPTSNDTSSVSGWGDPKPALRWGD--SKGSSCQGGWE 774
Query: 1235 NVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWG----SEASWGKSSGDRQEN 1290
+ AA + WG S +K + + K+ GWG S W S+ D
Sbjct: 775 D--DAAATGMVK---SNQWGNSKEEKSA-WNDSQKSKQGWGDGQKSNQGWSVSASDNW-- 826
Query: 1291 VGGSASKPLSGWGA---KASWGKSSEDKLEEVETTVAKPSS-AWGTE------ASWDKSS 1340
G S+ + WG K+S G S D+ + K SS WG + WD+SS
Sbjct: 827 --GETSRS-NHWGEANKKSSSGGSDSDRSVSGWNELGKTSSFTWGNNINPNNSSGWDESS 883
Query: 1341 EVTLEKVAA--PAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWG---RNGSEENSGW 1395
+ + P N GWG DS K +W + SWG G +GW
Sbjct: 884 KPNPSQGWGDPPKSNQSLGWG----DSSKPVTSPDWNKQQDIVGSWGIPPATGKPPGTGW 939
Query: 1396 DTKASWKTKALDKLDD-VGSAVENSSSVWGARE-DFSTKGWEDSSKPSANEKSIVHQIGG 1453
A K ++ G + S+ E D T W D SK N K++ +
Sbjct: 940 ---LGGPIPAPTKEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSK--YNYKNV--NMWN 992
Query: 1454 WNVPDAKGTDDSCWGKQKLTENAKGTDD------SSWGKQKHTENESPQPASSNAWDLPD 1507
NVP+ D +L +A + S WG + E +P N
Sbjct: 993 KNVPNGSSRSDQQAQVHQLLPSASAISNKEAGSGSGWG-EPWGEPSTPATTVDNG---TS 1048
Query: 1508 ATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRS--PGVVNDD 1557
A G WG+ + W SSS + P+S G DD
Sbjct: 1049 AWGKPIDSGPSWGEPIAAASNTST-WGSSSVGPQALSKSGPKSMQDGWCGDD 1099
Score = 162 (62.1 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 88/347 (25%), Positives = 144/347 (41%)
Query: 1233 WENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQEN-- 1290
WE+ G+ +++ S WG+ + S G + +PA T + S W K ++ N
Sbjct: 543 WES-GATNSQNAS-WGS-GNGANSGGSRRGWGTPAQNTGTNIPS-VEWSKLPSNQHSNDS 598
Query: 1291 VGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAW----GTEASWDKSSEVT--L 1344
G+ K +GW K++ ED+ T + +S W GT S + S+E T L
Sbjct: 599 ANGNGKKFTNGW--KST---EEEDQASAASQTTEQ-NSVWAKTGGTVES-EGSTESTGRL 651
Query: 1345 EKVAAPAENPLSGWGTEAQDSGKSS--DWSEWKDHANATASWGRNGSEENSGWDTKASWK 1402
E+ A EN Q + S + ++ + + WG+ ++N+ WDT+ S +
Sbjct: 652 EEKAT-GENQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPR 710
Query: 1403 TKALDKLDDVGSAVENSSSVWG--AREDFSTKGWEDSSKPSANEKSIVHQIGGWNVP--- 1457
+ K D N + WG A + F++ D + P++N+ S + GW P
Sbjct: 711 GER--KTD-------NGTEAWGSSATQTFNSGACTDKTSPTSNDTS---SVSGWGDPKPA 758
Query: 1458 ----DAKGTDDSCWGKQKLTENAKGTDDSS-WGKQKHTENE-SPQPASSNAWDLPDATGG 1511
D+KG+ SC G + A G S+ WG K ++ + S W G
Sbjct: 759 LRWGDSKGS--SCQGGWEDDAAATGMVKSNQWGNSKEEKSAWNDSQKSKQGW------GD 810
Query: 1512 SETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDS 1558
+ Q W S + N G S S W G+ N+ S G +D S
Sbjct: 811 GQKSNQGWSVSASD----NWGETSRSNHW-GEANKKSSSGGSDSDRS 852
Score = 162 (62.1 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 111/459 (24%), Positives = 171/459 (37%)
Query: 1139 CSDK--PVFEDLVEDQSWLENKQENANW-DSE-ADCRKSSEDKWEKLGTSLEKPSSGW-- 1192
C+DK P D W + K W DS+ + C+ ED + T + K S+ W
Sbjct: 735 CTDKTSPTSNDTSSVSGWGDPKPA-LRWGDSKGSSCQGGWED--DAAATGMVK-SNQWGN 790
Query: 1193 --RTEGAWGKSSDDKLEKAGSPSRKPSGWGTEAS--WGESS-CDKWENV-------GSPA 1240
+ AW S K + G + GW AS WGE+S + W GS +
Sbjct: 791 SKEEKSAWNDSQKSK-QGWGDGQKSNQGWSVSASDNWGETSRSNHWGEANKKSSSGGSDS 849
Query: 1241 AKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEAS------WGKSSGDRQENVGGS 1294
+S S W E SF N++P SSGW + WG Q G
Sbjct: 850 DRSVSGWN-ELGKTSSF-TWGNNINP--NNSSGWDESSKPNPSQGWGDPPKSNQSLGWGD 905
Query: 1295 ASKPLSGWGAKASWGKSSEDKLEE--VETTVAKPSSAWGTEASWDKSSEVTLEKVAAPA- 1351
+SKP++ W K +D + + KP GT W + AP
Sbjct: 906 SSKPVTS----PDWNKQ-QDIVGSWGIPPATGKPP---GT--GWLGGP------IPAPTK 949
Query: 1352 ENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEEN----SGWDTKASWKTKALD 1407
E +GW + +S + E D T++WG + S+ N + W+ + D
Sbjct: 950 EEEPTGWEEPSPESIRRK--MEIDD---GTSAWG-DPSKYNYKNVNMWNKNVPNGSSRSD 1003
Query: 1408 KLDDVGSAVENSSSVWGAREDFSTKGW-EDSSKPSANEKSIVHQIGGWNVPDAKGTDDSC 1466
+ V + ++S++ +E S GW E +PS ++ + W P G
Sbjct: 1004 QQAQVHQLLPSASAI-SNKEAGSGSGWGEPWGEPSTPATTVDNGTSAWGKPIDSGPS--- 1059
Query: 1467 WGKQ-KLTENAKGTDDSSWGKQKHTENESPQPASSNAW---DLP----DATGGSE---TE 1515
WG+ N SS G Q +++ P+ + + W D+P TG E E
Sbjct: 1060 WGEPIAAASNTSTWGSSSVGPQALSKS-GPK-SMQDGWCGDDMPLPGNRPTGWEEEEDVE 1117
Query: 1516 MQVWGQSRKEPFKKNRGWAS-----SSGEWKGKKNRPPR 1549
+ +W + + + W SS GKK R R
Sbjct: 1118 IGMWNSNSSQELNSSLNWPPYTKKMSSKGLSGKKRRRER 1156
Score = 157 (60.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 95/384 (24%), Positives = 148/384 (38%)
Query: 1152 QSWLENKQENANWDSEADCRKSSEDK-W----EKLGTSLEKPSSGWRTEGAWGKSSDDKL 1206
+S N Q NA+W S + W + GT++ PS W + + S+D
Sbjct: 544 ESGATNSQ-NASWGSGNGANSGGSRRGWGTPAQNTGTNI--PSVEWSKLPS-NQHSNDSA 599
Query: 1207 EKAGSPSRKPSGW-GTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVS 1265
G+ + +GW TE S+ + S AK+ GT S G + E+
Sbjct: 600 N--GNGKKFTNGWKSTEEEDQASAASQTTEQNSVWAKT---GGTVESEGST-----ESTG 649
Query: 1266 PAAKTSSGWGSEASWGKSSGDR--QENVGGSASKPL----SGWGA-----KASWGKSSED 1314
+ ++G K Q V + P SGWG +W +
Sbjct: 650 RLEEKATGENQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSP 709
Query: 1315 KLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENP---LSGWGTEAQ-----DSG 1366
+ E +T + AWG+ A+ +S +K + P N +SGWG DS
Sbjct: 710 RGER-KTD--NGTEAWGSSATQTFNSGACTDKTS-PTSNDTSSVSGWGDPKPALRWGDSK 765
Query: 1367 KSSDWSEWKDHANATA-----SWGRNGSEENSGW-DTKASWKTKALDKLDDVGSAVENSS 1420
SS W+D A AT WG N EE S W D++ S + + + G +V S
Sbjct: 766 GSSCQGGWEDDAAATGMVKSNQWG-NSKEEKSAWNDSQKSKQGWGDGQKSNQGWSVSASD 824
Query: 1421 SVWGAREDFSTKGWEDSSKPSANEKSIVHQ-IGGWNVPDAKGTDDSCWGKQKLTENAKGT 1479
+ WG E + W +++K S++ S + + GWN + T WG N+ G
Sbjct: 825 N-WG--ETSRSNHWGEANKKSSSGGSDSDRSVSGWN--ELGKTSSFTWGNNINPNNSSGW 879
Query: 1480 DDSSWGKQKHTENESPQPASSNAW 1503
D+SS + P+ S W
Sbjct: 880 DESSKPNPSQGWGDPPKSNQSLGW 903
Score = 48 (22.0 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 1519 WGQSRKEPFKKNRGWASS--SGE-WKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLD 1572
W +++ + W GE WKG N P + V S +N + T + +D
Sbjct: 1514 WPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINNLSINTVREVD 1570
>UNIPROTKB|F1PMK2 [details] [associations]
symbol:TNRC6A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0035278 "negative regulation of translation
involved in gene silencing by miRNA" evidence=IEA] [GO:0035068
"micro-ribonucleoprotein complex" evidence=IEA] [GO:0009267
"cellular response to starvation" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR026804 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0009267 GO:GO:0000932 GO:GO:0035068
GO:GO:0035278 GeneTree:ENSGT00410000025966 InterPro:IPR019486
PANTHER:PTHR31070 Pfam:PF10427 OMA:TQTFNSG EMBL:AAEX03004442
EMBL:AAEX03004443 EMBL:AAEX03004444 Ensembl:ENSCAFT00000027808
Uniprot:F1PMK2
Length = 1957
Score = 195 (73.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 131/532 (24%), Positives = 194/532 (36%)
Query: 1070 AVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTG--IEEL----DTGCLGEEVDG 1123
A G G +F W++ EE +Q + V + TG +E TG L E+ G
Sbjct: 625 ANGNGKKFTNGWKSTEEE-DQASAASQTTEQNSVWAKTGGTVESEGSTESTGRLEEKATG 683
Query: 1124 LEDEFDWSLSPEHNLCSDKPVFEDL----VEDQSWLENK-QENANWDSEADCR--KSSED 1176
D +H L DL + + W + ++N WD+E R + +++
Sbjct: 684 ENQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDN 743
Query: 1177 KWEKLGTSLEKP-SSGWRTEGAWGKSSDDKLEKAGSPSRKPS-GWGTEASWGESSCDKWE 1234
E G+S + +SG T+ +S+D +G KP+ WG S G S WE
Sbjct: 744 GTEAWGSSATQTFNSGACTDKT-SPTSNDTSSVSGWGDPKPALRWGD--SKGSSCQGGWE 800
Query: 1235 NVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWG----SEASWGKSSGDRQEN 1290
+ AA + WG S +K + + K+ GWG S W S+ D
Sbjct: 801 D--DAAATGMVK---SNQWGNSKEEKSA-WNDSQKSKQGWGDGQKSNQGWSVSASDNW-- 852
Query: 1291 VGGSASKPLSGWGA---KASWGKSSEDKLEEVETTVAKPSS-AWGTE------ASWDKSS 1340
G S+ + WG K+S G S D+ + K SS WG + WD+SS
Sbjct: 853 --GETSRS-NHWGEANKKSSSGGSDSDRSVSGWNELGKTSSFTWGNNINPNNSSGWDESS 909
Query: 1341 EVTLEKVAA--PAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWG---RNGSEENSGW 1395
+ + P N GWG DS K +W + SWG G +GW
Sbjct: 910 KPNPSQGWGDPPKSNQSLGWG----DSSKPVTSPDWNKQQDIVGSWGIPPATGKPPGTGW 965
Query: 1396 DTKASWKTKALDKLDD-VGSAVENSSSVWGARE-DFSTKGWEDSSKPSANEKSIVHQIGG 1453
A K ++ G + S+ E D T W D SK N K++ +
Sbjct: 966 ---LGGPIPAPTKEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSK--YNYKNV--NMWN 1018
Query: 1454 WNVPDAKGTDDSCWGKQKLTENAKGTDD------SSWGKQKHTENESPQPASSNAWDLPD 1507
NVP+ D +L +A + S WG + E +P N
Sbjct: 1019 KNVPNGSSRSDQQAQVHQLLPSASAISNKEAGSGSGWG-EPWGEPSTPATTVDNG---TS 1074
Query: 1508 ATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRS--PGVVNDD 1557
A G WG+ + W SSS + P+S G DD
Sbjct: 1075 AWGKPIDSGPSWGEPIAAASNTST-WGSSSVGPQALSKSGPKSMQDGWCGDD 1125
Score = 183 (69.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 109/448 (24%), Positives = 168/448 (37%)
Query: 1129 DWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKP 1188
+WS P + +D W ++E+ S A W K G ++E
Sbjct: 611 EWSKLPSNQHSNDSANGNGKKFTNGWKSTEEEDQA--SAASQTTEQNSVWAKTGGTVESE 668
Query: 1189 ----SSGWRTEGAWGKS-SDDK--------LEKAGSPSRKPSGWGTEASWGESSCDK--- 1232
S+G E A G++ S D+ L+ + + + + WG++ +
Sbjct: 669 GSTESTGRLEEKATGENQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTA 728
Query: 1233 WENVGSPAAKSFSEWGTEASWGKS----F--GDKPENVSPAAK-TSS--GWGSEAS---W 1280
W+ SP + ++ GTEA WG S F G + SP + TSS GWG W
Sbjct: 729 WDTETSPRGERKTDNGTEA-WGSSATQTFNSGACTDKTSPTSNDTSSVSGWGDPKPALRW 787
Query: 1281 GKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSS 1340
G S G + G +G WG S E+K ++ +K WG KS+
Sbjct: 788 GDSKGSSCQG-GWEDDAAATGMVKSNQWGNSKEEKSAWNDSQKSK--QGWG---DGQKSN 841
Query: 1341 EVTLEKVAAPAENPLSGWGTEAQDS-GKSSDWSEWKDHANATASWGRNGSEEN-SGWDT- 1397
+ GW A D+ G++S + W + AN +S G + S+ + SGW+
Sbjct: 842 Q---------------GWSVSASDNWGETSRSNHWGE-ANKKSSSGGSDSDRSVSGWNEL 885
Query: 1398 -KAS---WKTKALDKLDDVG---SAVENSSSVWG-AREDFSTKGWEDSSKPSANEKSIVH 1449
K S W ++ + G S+ N S WG + + GW DSSKP +
Sbjct: 886 GKTSSFTWGNN-INPNNSSGWDESSKPNPSQGWGDPPKSNQSLGWGDSSKPVTSPDWNKQ 944
Query: 1450 Q--IGGWNVPDAKGTDDSC-WGKQKLTENAKGTDDSSWGKQKHTENESPQPAS-SNAWDL 1505
Q +G W +P A G W + K + + W E P P S ++
Sbjct: 945 QDIVGSWGIPPATGKPPGTGWLGGPIPAPTKEEEPTGW--------EEPSPESIRRKMEI 996
Query: 1506 PDATGGSETEMQVWGQSRKEPFKKNRGW 1533
D T WG K +K W
Sbjct: 997 DDGTSA-------WGDPSKYNYKNVNMW 1017
Score = 162 (62.1 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 88/347 (25%), Positives = 144/347 (41%)
Query: 1233 WENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQEN-- 1290
WE+ G+ +++ S WG+ + S G + +PA T + S W K ++ N
Sbjct: 569 WES-GATNSQNAS-WGS-GNGANSGGSRRGWGTPAQNTGTNIPS-VEWSKLPSNQHSNDS 624
Query: 1291 VGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAW----GTEASWDKSSEVT--L 1344
G+ K +GW K++ ED+ T + +S W GT S + S+E T L
Sbjct: 625 ANGNGKKFTNGW--KST---EEEDQASAASQTTEQ-NSVWAKTGGTVES-EGSTESTGRL 677
Query: 1345 EKVAAPAENPLSGWGTEAQDSGKSS--DWSEWKDHANATASWGRNGSEENSGWDTKASWK 1402
E+ A EN Q + S + ++ + + WG+ ++N+ WDT+ S +
Sbjct: 678 EEKAT-GENQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPR 736
Query: 1403 TKALDKLDDVGSAVENSSSVWG--AREDFSTKGWEDSSKPSANEKSIVHQIGGWNVP--- 1457
+ K D N + WG A + F++ D + P++N+ S + GW P
Sbjct: 737 GER--KTD-------NGTEAWGSSATQTFNSGACTDKTSPTSNDTS---SVSGWGDPKPA 784
Query: 1458 ----DAKGTDDSCWGKQKLTENAKGTDDSS-WGKQKHTENE-SPQPASSNAWDLPDATGG 1511
D+KG+ SC G + A G S+ WG K ++ + S W G
Sbjct: 785 LRWGDSKGS--SCQGGWEDDAAATGMVKSNQWGNSKEEKSAWNDSQKSKQGW------GD 836
Query: 1512 SETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDS 1558
+ Q W S + N G S S W G+ N+ S G +D S
Sbjct: 837 GQKSNQGWSVSASD----NWGETSRSNHW-GEANKKSSSGGSDSDRS 878
Score = 157 (60.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 95/384 (24%), Positives = 148/384 (38%)
Query: 1152 QSWLENKQENANWDSEADCRKSSEDK-W----EKLGTSLEKPSSGWRTEGAWGKSSDDKL 1206
+S N Q NA+W S + W + GT++ PS W + + S+D
Sbjct: 570 ESGATNSQ-NASWGSGNGANSGGSRRGWGTPAQNTGTNI--PSVEWSKLPS-NQHSNDSA 625
Query: 1207 EKAGSPSRKPSGW-GTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVS 1265
G+ + +GW TE S+ + S AK+ GT S G + E+
Sbjct: 626 N--GNGKKFTNGWKSTEEEDQASAASQTTEQNSVWAKT---GGTVESEGST-----ESTG 675
Query: 1266 PAAKTSSGWGSEASWGKSSGDR--QENVGGSASKPL----SGWGA-----KASWGKSSED 1314
+ ++G K Q V + P SGWG +W +
Sbjct: 676 RLEEKATGENQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSP 735
Query: 1315 KLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENP---LSGWGTEAQ-----DSG 1366
+ E +T + AWG+ A+ +S +K + P N +SGWG DS
Sbjct: 736 RGER-KTD--NGTEAWGSSATQTFNSGACTDKTS-PTSNDTSSVSGWGDPKPALRWGDSK 791
Query: 1367 KSSDWSEWKDHANATA-----SWGRNGSEENSGW-DTKASWKTKALDKLDDVGSAVENSS 1420
SS W+D A AT WG N EE S W D++ S + + + G +V S
Sbjct: 792 GSSCQGGWEDDAAATGMVKSNQWG-NSKEEKSAWNDSQKSKQGWGDGQKSNQGWSVSASD 850
Query: 1421 SVWGAREDFSTKGWEDSSKPSANEKSIVHQ-IGGWNVPDAKGTDDSCWGKQKLTENAKGT 1479
+ WG E + W +++K S++ S + + GWN + T WG N+ G
Sbjct: 851 N-WG--ETSRSNHWGEANKKSSSGGSDSDRSVSGWN--ELGKTSSFTWGNNINPNNSSGW 905
Query: 1480 DDSSWGKQKHTENESPQPASSNAW 1503
D+SS + P+ S W
Sbjct: 906 DESSKPNPSQGWGDPPKSNQSLGW 929
Score = 48 (22.0 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 1519 WGQSRKEPFKKNRGWASS--SGE-WKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLD 1572
W +++ + W GE WKG N P + V S +N + T + +D
Sbjct: 1589 WPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINNLSINTVREVD 1645
>UNIPROTKB|J9NXD6 [details] [associations]
symbol:TNRC6B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 EMBL:AAEX03007304 EMBL:AAEX03007305
Ensembl:ENSCAFT00000047971 Uniprot:J9NXD6
Length = 1838
Score = 196 (74.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 109/434 (25%), Positives = 162/434 (37%)
Query: 1148 LVEDQSWLENK-QENANWDSEADCR-KSSEDK----WEKLGTSLEKPSSGWR---TEGAW 1198
++ + W + + +++ WD E R + DK WE T K S GW ++
Sbjct: 616 VLSNTGWGQTQIKQDTVWDIEEVPRPEGKSDKGTEGWESAATQT-KNSGGWGDAPSQSNQ 674
Query: 1199 GKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFG 1258
KS +L A + + P G + ++ W G P K+ S W +S + +G
Sbjct: 675 MKSGWGELS-ASTEWKDPKNTGGWNDYKNNNSSNWGG-GRPDEKTSSSWNENSSKDQGWG 732
Query: 1259 DKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKA-----SWGKSSE 1313
+ +GWG E K+S E+ SASKP+SGWG +WG S
Sbjct: 733 GGRQPNQGWTSGKNGWGEEVDQAKNSS--WES---SASKPVSGWGEGGQNEIGTWGNSGN 787
Query: 1314 DKL-EEVETTVAKPSSAWGTEA-----SWDKSSEVTLEKVAAPAENP-LSG-WG---TEA 1362
L + K S AW TE SW K + + P P SG WG
Sbjct: 788 ASLASKGGWEDCKRSPAW-TETGRQPNSWHKQHQQQQQPQQPPPPQPEASGSWGGPPPPP 846
Query: 1363 QDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSV 1422
+G+ S+ S W EE SGW+ + K+D +++ +S
Sbjct: 847 PGNGRPSN-SNWSSGPQPVTP----KDEEPSGWEEPSPQSISR--KMD-----IDDGTSA 894
Query: 1423 WGAREDFSTKG---WEDSSK--PSANEKSIVHQIGGWNVPDAKGTDD-SCWGKQKLTENA 1476
WG ++ K W+ +S+ P+ E N+P + S W K T A
Sbjct: 895 WGDPNSYNYKNVNLWDKNSQGGPAPREP---------NLPTPMTSKSASVWSKS--TPPA 943
Query: 1477 KGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNR----- 1531
S+WG+ NES S W D TG S T + K N
Sbjct: 944 PDNGTSAWGEP----NES-----SPGWGEMDDTGASTTGWGNAPSNAPNAMKPNSKSMQD 994
Query: 1532 GWASSSGEWKGKKN 1545
GW S G G ++
Sbjct: 995 GWGESDGPVTGTRH 1008
Score = 175 (66.7 bits), Expect = 4.9e-06, Sum P(3) = 4.9e-06
Identities = 97/429 (22%), Positives = 161/429 (37%)
Query: 1150 EDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSG-WRTEGAWGKSSDDKLEK 1208
++ SW N+ +W+ + S+++KW + S G W+ + +
Sbjct: 469 KNDSWDNNRSTGGSWNFGP--QDSNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWSG 526
Query: 1209 AGSPSRKPSGWGTEASWGESSCDKWENVGSPA-AKSFSEWGTEASWGKSFGDKPENVSPA 1267
P+ W + G + N +P +S S G+E G+S G + S
Sbjct: 527 PNQPNSSTGAWDNQK--GHPLPENQGNAQAPCWGRSSSSTGSEVG-GQSTGSNHKAGSSD 583
Query: 1268 AKTSSGWGSEASWGKSSGDRQENVGGSASKP--LS--GWGAKASWGKSSEDKLEEVETTV 1323
+ S + Q + + P LS GWG + D +EEV
Sbjct: 584 SHNSGRRSYRPTHPDCQAVLQTLLSRTDLDPRVLSNTGWGQTQIKQDTVWD-IEEVPRPE 642
Query: 1324 AKPSSAWGTEASWDKSSEVTLEKVA---APAE-NPL-SGWG-----TEAQDSGKSSDWSE 1373
K GTE W+ ++ T AP++ N + SGWG TE +D + W++
Sbjct: 643 GKSDK--GTEG-WESAATQTKNSGGWGDAPSQSNQMKSGWGELSASTEWKDPKNTGGWND 699
Query: 1374 WKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFS-TK 1432
+K++ ++ GR + +S W+ +S K + + + WG D +
Sbjct: 700 YKNNNSSNWGGGRPDEKTSSSWNENSS-KDQGWGGGRQPNQGWTSGKNGWGEEVDQAKNS 758
Query: 1433 GWEDS-SKP-SANEKSIVHQIGGW-NVPDA----KGTDDSCWGKQKLTENAKGTDDSSWG 1485
WE S SKP S + ++IG W N +A KG + C TE G +SW
Sbjct: 759 SWESSASKPVSGWGEGGQNEIGTWGNSGNASLASKGGWEDCKRSPAWTET--GRQPNSWH 816
Query: 1486 KQKHTENES-----PQPASSNAWD--LPDATGGSETEMQVWGQSRKEPFKKNR---GWAS 1535
KQ + + PQP +S +W P G W + K+ GW
Sbjct: 817 KQHQQQQQPQQPPPPQPEASGSWGGPPPPPPGNGRPSNSNWSSGPQPVTPKDEEPSGWEE 876
Query: 1536 SSGEWKGKK 1544
S + +K
Sbjct: 877 PSPQSISRK 885
Score = 168 (64.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 109/449 (24%), Positives = 173/449 (38%)
Query: 1146 EDLVEDQSWLENKQENANWDS-------EADCRKSSEDKWEKLGTSLEKPSSGW----RT 1194
E+ +DQ W +Q N W S E D K+S WE +S KP SGW +
Sbjct: 723 ENSSKDQGWGGGRQPNQGWTSGKNGWGEEVDQAKNSS--WE---SSASKPVSGWGEGGQN 777
Query: 1195 E-GAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEA-S 1252
E G WG S + L G GW C + SPA ++E G + S
Sbjct: 778 EIGTWGNSGNASLASKG-------GW--------EDCKR-----SPA---WTETGRQPNS 814
Query: 1253 WGKSFGDK--PENVSPAAKTSSG-WGSEASWGKSSGDRQENVGGSASKPLSGWGAKAS-W 1308
W K + P+ P +SG WG +G + S +P++ + S W
Sbjct: 815 WHKQHQQQQQPQQPPPPQPEASGSWGGPPPPPPGNGRPSNSNWSSGPQPVTPKDEEPSGW 874
Query: 1309 GKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKS 1368
+ S + + + +SAWG S++ + +K + P S +
Sbjct: 875 EEPSPQSISR-KMDIDDGTSAWGDPNSYNYKNVNLWDKNSQGGPAPREPNLPTPMTSKSA 933
Query: 1369 SDWSEWKDHA--NATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAR 1426
S WS+ A N T++WG +E + GW T A G+A N+ +
Sbjct: 934 SVWSKSTPPAPDNGTSAWGEP-NESSPGWGEMDD--TGA--STTGWGNAPSNAPNAMKPN 988
Query: 1427 EDFSTKGWEDSSKPSANEKSIVHQI---GG-WNVPDAKGTDDS----CWG---KQKLTEN 1475
GW +S P + + GG WN ++G+ S WG K+++ +
Sbjct: 989 SKSMQDGWGESDGPVTGTRHPSWEEEDDGGVWNTAGSQGSASSHNSASWGQGGKKQMKCS 1048
Query: 1476 AKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWAS 1535
KG ++ SW + S S D P GS+ ++ V G + F ++ A
Sbjct: 1049 LKGGNNDSW-MNPLAKQFSNMGLLSQTEDNP----GSKMDLSV-GSLPDKKFDVDKR-AM 1101
Query: 1536 SSGEWKG--KKNR----PPRSPGVVNDDS 1558
+ G++ +K+R PP S + DS
Sbjct: 1102 NLGDFNDIMRKDRSGFRPPNSKDMGTTDS 1130
Score = 44 (20.5 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 235 DPNSTTKAWLEKMRTLFIRKGS-----GFSSRSVIT-GDAYK----RVNEIGVPFEIAQR 284
+PNS AW ++ RKG+ SS V T G A + ++ GV F ++ R
Sbjct: 303 NPNSNPSAWPALVQEGNSRKGALETDTSNSSAQVSTVGQASREQQSKMENAGVNFVVSGR 362
Query: 285 ITFEERVNVHN 295
E+ +HN
Sbjct: 363 ----EQAQIHN 369
Score = 40 (19.1 bits), Expect = 4.9e-06, Sum P(3) = 4.9e-06
Identities = 21/77 (27%), Positives = 27/77 (35%)
Query: 1501 NAWDL-PDATGGSETEM--QVWGQSRKEPFKK------NRGWASS--SG-EWKGKKNRPP 1548
N +D+ P T G T W ++ P K N W G WKG +N P
Sbjct: 1438 NQFDIIPSDTLGGHTGPAGDSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDP 1497
Query: 1549 RSPGVVNDDSTVNAMYT 1565
S V S + T
Sbjct: 1498 ESDPYVTPGSVLGGTAT 1514
>UNIPROTKB|F1PND4 [details] [associations]
symbol:TNRC6B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 EMBL:AAEX03007304 EMBL:AAEX03007305
Ensembl:ENSCAFT00000001986 Uniprot:F1PND4
Length = 1725
Score = 206 (77.6 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 100/412 (24%), Positives = 157/412 (38%)
Query: 1148 LVEDQSWLENK-QENANWDSEADCR-KSSEDK----WEKLGTSLEKPSSGWR---TEGAW 1198
++ + W + + +++ WD E R + DK WE T K S GW ++
Sbjct: 615 VLSNTGWGQTQIKQDTVWDIEEVPRPEGKSDKGTEGWESAATQT-KNSGGWGDAPSQSNQ 673
Query: 1199 GKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFG 1258
KS +L A + + P G + ++ W G P K+ S W +S + +G
Sbjct: 674 MKSGWGELS-ASTEWKDPKNTGGWNDYKNNNSSNWGG-GRPDEKTSSSWNENSSKDQGWG 731
Query: 1259 DKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKA-----SWGKSSE 1313
+ +GWG E K+S E+ SASKP+SGWG +WG S
Sbjct: 732 GGRQPNQGWTSGKNGWGEEVDQAKNSS--WES---SASKPVSGWGEGGQNEIGTWGNSGN 786
Query: 1314 DKL-EEVETTVAKPSSAWGTEA-----SWDKSSEVTLEKVAAPAENP-LSG-WG---TEA 1362
L + K S AW TE SW K + + P P SG WG
Sbjct: 787 ASLASKGGWEDCKRSPAW-TETGRQPNSWHKQHQQQQQPQQPPPPQPEASGSWGGPPPPP 845
Query: 1363 QDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSV 1422
+G+ S+ S W EE SGW+ + K+D +++ +S
Sbjct: 846 PGNGRPSN-SNWSSGPQPVTP----KDEEPSGWEEPSPQSISR--KMD-----IDDGTSA 893
Query: 1423 WGAREDFSTKG---WEDSSK--PSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAK 1477
WG ++ K W+ +S+ P+ E ++ + + D+K D WG+
Sbjct: 894 WGDPNSYNYKNVNLWDKNSQGGPAPREPNLPTPMTSKSASDSKSMQDG-WGESD--GPVT 950
Query: 1478 GTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQV-WGQSRKEPFK 1528
GT SW E E W+ + G + + WGQ K+ K
Sbjct: 951 GTRHPSW------EEED----DGGVWNTAGSQGSASSHNSASWGQGGKKQMK 992
Score = 175 (66.7 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 97/429 (22%), Positives = 161/429 (37%)
Query: 1150 EDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSG-WRTEGAWGKSSDDKLEK 1208
++ SW N+ +W+ + S+++KW + S G W+ + +
Sbjct: 468 KNDSWDNNRSTGGSWNFGP--QDSNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWSG 525
Query: 1209 AGSPSRKPSGWGTEASWGESSCDKWENVGSPA-AKSFSEWGTEASWGKSFGDKPENVSPA 1267
P+ W + G + N +P +S S G+E G+S G + S
Sbjct: 526 PNQPNSSTGAWDNQK--GHPLPENQGNAQAPCWGRSSSSTGSEVG-GQSTGSNHKAGSSD 582
Query: 1268 AKTSSGWGSEASWGKSSGDRQENVGGSASKP--LS--GWGAKASWGKSSEDKLEEVETTV 1323
+ S + Q + + P LS GWG + D +EEV
Sbjct: 583 SHNSGRRSYRPTHPDCQAVLQTLLSRTDLDPRVLSNTGWGQTQIKQDTVWD-IEEVPRPE 641
Query: 1324 AKPSSAWGTEASWDKSSEVTLEKVA---APAE-NPL-SGWG-----TEAQDSGKSSDWSE 1373
K GTE W+ ++ T AP++ N + SGWG TE +D + W++
Sbjct: 642 GKSDK--GTEG-WESAATQTKNSGGWGDAPSQSNQMKSGWGELSASTEWKDPKNTGGWND 698
Query: 1374 WKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFS-TK 1432
+K++ ++ GR + +S W+ +S K + + + WG D +
Sbjct: 699 YKNNNSSNWGGGRPDEKTSSSWNENSS-KDQGWGGGRQPNQGWTSGKNGWGEEVDQAKNS 757
Query: 1433 GWEDS-SKP-SANEKSIVHQIGGW-NVPDA----KGTDDSCWGKQKLTENAKGTDDSSWG 1485
WE S SKP S + ++IG W N +A KG + C TE G +SW
Sbjct: 758 SWESSASKPVSGWGEGGQNEIGTWGNSGNASLASKGGWEDCKRSPAWTET--GRQPNSWH 815
Query: 1486 KQKHTENES-----PQPASSNAWD--LPDATGGSETEMQVWGQSRKEPFKKNR---GWAS 1535
KQ + + PQP +S +W P G W + K+ GW
Sbjct: 816 KQHQQQQQPQQPPPPQPEASGSWGGPPPPPPGNGRPSNSNWSSGPQPVTPKDEEPSGWEE 875
Query: 1536 SSGEWKGKK 1544
S + +K
Sbjct: 876 PSPQSISRK 884
Score = 44 (20.5 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 235 DPNSTTKAWLEKMRTLFIRKGS-----GFSSRSVIT-GDAYK----RVNEIGVPFEIAQR 284
+PNS AW ++ RKG+ SS V T G A + ++ GV F ++ R
Sbjct: 302 NPNSNPSAWPALVQEGNSRKGALETDTSNSSAQVSTVGQASREQQSKMENAGVNFVVSGR 361
Query: 285 ITFEERVNVHN 295
E+ +HN
Sbjct: 362 ----EQAQIHN 368
Score = 42 (19.8 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 189 SRSGTPNFESQEV------ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKA 242
S G+ NF Q+ E N + V Q + T + G +Q PNS+T A
Sbjct: 477 STGGSWNFGPQDSNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWSGPNQ-PNSSTGA 535
Query: 243 W 243
W
Sbjct: 536 W 536
Score = 40 (19.1 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 21/77 (27%), Positives = 27/77 (35%)
Query: 1501 NAWDL-PDATGGSETEM--QVWGQSRKEPFKK------NRGWASS--SG-EWKGKKNRPP 1548
N +D+ P T G T W ++ P K N W G WKG +N P
Sbjct: 1327 NQFDIIPSDTLGGHTGPAGDSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDP 1386
Query: 1549 RSPGVVNDDSTVNAMYT 1565
S V S + T
Sbjct: 1387 ESDPYVTPGSVLGGTAT 1403
>UNIPROTKB|J9JHC8 [details] [associations]
symbol:TNRC6B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009152 "purine ribonucleotide biosynthetic
process" evidence=IEA] [GO:0004018 "N6-(1,2-dicarboxyethyl)AMP
AMP-lyase (fumarate-forming) activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004769
InterPro:IPR008948 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR020557 PROSITE:PS00163 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.275.10 InterPro:IPR024083 InterPro:IPR022761
Pfam:PF00206 SUPFAM:SSF48557 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 Pfam:PF10427
GO:GO:0009152 GO:GO:0004018 InterPro:IPR019468
PANTHER:PTHR11444:SF2 Pfam:PF10397 SMART:SM00998 TIGRFAMs:TIGR00928
EMBL:AAEX03007304 EMBL:AAEX03007305 Ensembl:ENSCAFT00000045467
Uniprot:J9JHC8
Length = 2211
Score = 196 (74.1 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 109/434 (25%), Positives = 162/434 (37%)
Query: 1148 LVEDQSWLENK-QENANWDSEADCR-KSSEDK----WEKLGTSLEKPSSGWR---TEGAW 1198
++ + W + + +++ WD E R + DK WE T K S GW ++
Sbjct: 652 VLSNTGWGQTQIKQDTVWDIEEVPRPEGKSDKGTEGWESAATQT-KNSGGWGDAPSQSNQ 710
Query: 1199 GKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFG 1258
KS +L A + + P G + ++ W G P K+ S W +S + +G
Sbjct: 711 MKSGWGELS-ASTEWKDPKNTGGWNDYKNNNSSNWGG-GRPDEKTSSSWNENSSKDQGWG 768
Query: 1259 DKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKA-----SWGKSSE 1313
+ +GWG E K+S E+ SASKP+SGWG +WG S
Sbjct: 769 GGRQPNQGWTSGKNGWGEEVDQAKNSS--WES---SASKPVSGWGEGGQNEIGTWGNSGN 823
Query: 1314 DKL-EEVETTVAKPSSAWGTEA-----SWDKSSEVTLEKVAAPAENP-LSG-WG---TEA 1362
L + K S AW TE SW K + + P P SG WG
Sbjct: 824 ASLASKGGWEDCKRSPAW-TETGRQPNSWHKQHQQQQQPQQPPPPQPEASGSWGGPPPPP 882
Query: 1363 QDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSV 1422
+G+ S+ S W EE SGW+ + K+D +++ +S
Sbjct: 883 PGNGRPSN-SNWSSGPQPVTP----KDEEPSGWEEPSPQSISR--KMD-----IDDGTSA 930
Query: 1423 WGAREDFSTKG---WEDSSK--PSANEKSIVHQIGGWNVPDAKGTDD-SCWGKQKLTENA 1476
WG ++ K W+ +S+ P+ E N+P + S W K T A
Sbjct: 931 WGDPNSYNYKNVNLWDKNSQGGPAPREP---------NLPTPMTSKSASVWSKS--TPPA 979
Query: 1477 KGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNR----- 1531
S+WG+ NES S W D TG S T + K N
Sbjct: 980 PDNGTSAWGEP----NES-----SPGWGEMDDTGASTTGWGNAPSNAPNAMKPNSKSMQD 1030
Query: 1532 GWASSSGEWKGKKN 1545
GW S G G ++
Sbjct: 1031 GWGESDGPVTGTRH 1044
Score = 175 (66.7 bits), Expect = 8.8e-06, Sum P(3) = 8.8e-06
Identities = 97/429 (22%), Positives = 161/429 (37%)
Query: 1150 EDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSG-WRTEGAWGKSSDDKLEK 1208
++ SW N+ +W+ + S+++KW + S G W+ + +
Sbjct: 505 KNDSWDNNRSTGGSWNFGP--QDSNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWSG 562
Query: 1209 AGSPSRKPSGWGTEASWGESSCDKWENVGSPA-AKSFSEWGTEASWGKSFGDKPENVSPA 1267
P+ W + G + N +P +S S G+E G+S G + S
Sbjct: 563 PNQPNSSTGAWDNQK--GHPLPENQGNAQAPCWGRSSSSTGSEVG-GQSTGSNHKAGSSD 619
Query: 1268 AKTSSGWGSEASWGKSSGDRQENVGGSASKP--LS--GWGAKASWGKSSEDKLEEVETTV 1323
+ S + Q + + P LS GWG + D +EEV
Sbjct: 620 SHNSGRRSYRPTHPDCQAVLQTLLSRTDLDPRVLSNTGWGQTQIKQDTVWD-IEEVPRPE 678
Query: 1324 AKPSSAWGTEASWDKSSEVTLEKVA---APAE-NPL-SGWG-----TEAQDSGKSSDWSE 1373
K GTE W+ ++ T AP++ N + SGWG TE +D + W++
Sbjct: 679 GKSDK--GTEG-WESAATQTKNSGGWGDAPSQSNQMKSGWGELSASTEWKDPKNTGGWND 735
Query: 1374 WKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFS-TK 1432
+K++ ++ GR + +S W+ +S K + + + WG D +
Sbjct: 736 YKNNNSSNWGGGRPDEKTSSSWNENSS-KDQGWGGGRQPNQGWTSGKNGWGEEVDQAKNS 794
Query: 1433 GWEDS-SKP-SANEKSIVHQIGGW-NVPDA----KGTDDSCWGKQKLTENAKGTDDSSWG 1485
WE S SKP S + ++IG W N +A KG + C TE G +SW
Sbjct: 795 SWESSASKPVSGWGEGGQNEIGTWGNSGNASLASKGGWEDCKRSPAWTET--GRQPNSWH 852
Query: 1486 KQKHTENES-----PQPASSNAWD--LPDATGGSETEMQVWGQSRKEPFKKNR---GWAS 1535
KQ + + PQP +S +W P G W + K+ GW
Sbjct: 853 KQHQQQQQPQQPPPPQPEASGSWGGPPPPPPGNGRPSNSNWSSGPQPVTPKDEEPSGWEE 912
Query: 1536 SSGEWKGKK 1544
S + +K
Sbjct: 913 PSPQSISRK 921
Score = 168 (64.2 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 109/449 (24%), Positives = 173/449 (38%)
Query: 1146 EDLVEDQSWLENKQENANWDS-------EADCRKSSEDKWEKLGTSLEKPSSGW----RT 1194
E+ +DQ W +Q N W S E D K+S WE +S KP SGW +
Sbjct: 759 ENSSKDQGWGGGRQPNQGWTSGKNGWGEEVDQAKNSS--WE---SSASKPVSGWGEGGQN 813
Query: 1195 E-GAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEA-S 1252
E G WG S + L G GW C + SPA ++E G + S
Sbjct: 814 EIGTWGNSGNASLASKG-------GW--------EDCKR-----SPA---WTETGRQPNS 850
Query: 1253 WGKSFGDK--PENVSPAAKTSSG-WGSEASWGKSSGDRQENVGGSASKPLSGWGAKAS-W 1308
W K + P+ P +SG WG +G + S +P++ + S W
Sbjct: 851 WHKQHQQQQQPQQPPPPQPEASGSWGGPPPPPPGNGRPSNSNWSSGPQPVTPKDEEPSGW 910
Query: 1309 GKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKS 1368
+ S + + + +SAWG S++ + +K + P S +
Sbjct: 911 EEPSPQSISR-KMDIDDGTSAWGDPNSYNYKNVNLWDKNSQGGPAPREPNLPTPMTSKSA 969
Query: 1369 SDWSEWKDHA--NATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAR 1426
S WS+ A N T++WG +E + GW T A G+A N+ +
Sbjct: 970 SVWSKSTPPAPDNGTSAWGEP-NESSPGWGEMDD--TGA--STTGWGNAPSNAPNAMKPN 1024
Query: 1427 EDFSTKGWEDSSKPSANEKSIVHQI---GG-WNVPDAKGTDDS----CWG---KQKLTEN 1475
GW +S P + + GG WN ++G+ S WG K+++ +
Sbjct: 1025 SKSMQDGWGESDGPVTGTRHPSWEEEDDGGVWNTAGSQGSASSHNSASWGQGGKKQMKCS 1084
Query: 1476 AKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWAS 1535
KG ++ SW + S S D P GS+ ++ V G + F ++ A
Sbjct: 1085 LKGGNNDSW-MNPLAKQFSNMGLLSQTEDNP----GSKMDLSV-GSLPDKKFDVDKR-AM 1137
Query: 1536 SSGEWKG--KKNR----PPRSPGVVNDDS 1558
+ G++ +K+R PP S + DS
Sbjct: 1138 NLGDFNDIMRKDRSGFRPPNSKDMGTTDS 1166
Score = 44 (20.5 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 235 DPNSTTKAWLEKMRTLFIRKGS-----GFSSRSVIT-GDAYK----RVNEIGVPFEIAQR 284
+PNS AW ++ RKG+ SS V T G A + ++ GV F ++ R
Sbjct: 339 NPNSNPSAWPALVQEGNSRKGALETDTSNSSAQVSTVGQASREQQSKMENAGVNFVVSGR 398
Query: 285 ITFEERVNVHN 295
E+ +HN
Sbjct: 399 ----EQAQIHN 405
Score = 40 (19.1 bits), Expect = 8.8e-06, Sum P(3) = 8.8e-06
Identities = 21/77 (27%), Positives = 27/77 (35%)
Query: 1501 NAWDL-PDATGGSETEM--QVWGQSRKEPFKK------NRGWASS--SG-EWKGKKNRPP 1548
N +D+ P T G T W ++ P K N W G WKG +N P
Sbjct: 1417 NQFDIIPSDTLGGHTGPAGDSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDP 1476
Query: 1549 RSPGVVNDDSTVNAMYT 1565
S V S + T
Sbjct: 1477 ESDPYVTPGSVLGGTAT 1493
>UNIPROTKB|E9PTW3 [details] [associations]
symbol:Dspp "Dentin sialophosphoprotein" species:10116
"Rattus norvegicus" [GO:0071460 "cellular response to cell-matrix
adhesion" evidence=IEA] RGD:2525 GeneTree:ENSGT00550000074777
GO:GO:0071460 IPI:IPI00198253 Ensembl:ENSRNOT00000002946
OMA:DESSIAV ArrayExpress:E9PTW3 Uniprot:E9PTW3
Length = 952
Score = 175 (66.7 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 84/416 (20%), Positives = 166/416 (39%)
Query: 1101 HMVRSSTGIEELDTGCLGEEVDGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQE 1160
H S T E D G + G +D D + + SD +D E + E+
Sbjct: 472 HGDASYTSDESSDNGGDSDSYAGEDDSSDDTSDTDD---SDSNGDDDS-ESEDKDESDNS 527
Query: 1161 NANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWG 1220
N + DS+++ + S D S + S ++ + S D + + S S
Sbjct: 528 NHDNDSDSESKSDSSDSDSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSDSSDSSDSSDS 587
Query: 1221 TEASWGESSCDKWENVGSPAAKSF-SEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEAS 1279
+++S S D N S ++ S S +++S D ++ + + S S++S
Sbjct: 588 SDSSDSSDSSDSDSNDSSDSSDSSDSSDSSDSSESSDSSDSSDSSDSSESSESSESSDSS 647
Query: 1280 WGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKS 1339
S D ++ S S S + S S D + +++ + SS +++S
Sbjct: 648 DSSDSSDSSDSSESSESSDSSD--SSDSSDSDSSDSSDSSDSSDSSDSSD-SSDSSDSSD 704
Query: 1340 SEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKA 1399
S + + ++ +++ S +++ DS SSD S+ D +N+ +S + S+ + D+
Sbjct: 705 SSDSSDSDSSDSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSDSSDSSDSSDSSDSSDSSD 764
Query: 1400 SWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDA 1459
S + + D D S+ + SS D S DSS S + S + +
Sbjct: 765 S--SDSSDSSDSSDSSDSSDSSDSSDSSDSSDSS--DSSDSSDSSDSSDSSDSSDSSDSS 820
Query: 1460 KGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETE 1515
+D + ++++ +D S + + S SSN+ D D++ G ++
Sbjct: 821 DSSDSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDGDSSD 876
Score = 158 (60.7 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 90/452 (19%), Positives = 174/452 (38%)
Query: 1083 TENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLEDEFDWSLSPEHNLCSDK 1142
T++ + N DD + D S+ + D+ + D D D S S + + SD
Sbjct: 505 TDDSDSNGDDDSESEDKDESDNSNHD-NDSDSESKSDSSDSDSDSSDSSDSSDSSDSSDS 563
Query: 1143 PVFEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSS 1202
D S + ++++ +D SS+ + + S ++ + S
Sbjct: 564 -------SDSSESSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSDSNDSSDSSDSSDSSDS 616
Query: 1203 DDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPE 1262
D E + S S +E+S S D ++ S + SE +E+S D +
Sbjct: 617 SDSSESSDSSDSSDSSDSSESSESSESSDSSDSSDSSDSSDSSE-SSESSDSSDSSDSSD 675
Query: 1263 NVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETT 1322
+ S + SS S++S S D ++ S S + +S S D + +++
Sbjct: 676 SDSSDSSDSSD-SSDSSDSSDSSDSSDSSDSSDSSDSDSSDSDSSDSSDSSDSSDSSDSS 734
Query: 1323 VAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATA 1382
+ SS S D S + +++ S +++ DS SSD S+ D ++++
Sbjct: 735 DSSDSSDSSNSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSD 794
Query: 1383 SWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSA 1442
S + S ++S D+ S + + D D S+ NSS + + + DSS S
Sbjct: 795 SSDSSDSSDSS--DSSDS--SDSSDSSDSSDSSDSNSSDSSDSSDSSDSSDSSDSSDSSD 850
Query: 1443 NEKSIVHQIGGWNVPDAKGTD-DSCWGKQKLTENAKG-TDDSSWGKQKHTENESPQPASS 1500
+ S + + +D DS G ++++ + +SS + + S +S
Sbjct: 851 SSDSSDSSDSSNSSDSSDSSDGDSSDGDSSDSDSSDSDSSNSSDSDSSDSSDSSSSDSSD 910
Query: 1501 NAWDLPDATGGSETEMQVWGQSRKEPFKKNRG 1532
+ D D+T S + G + + G
Sbjct: 911 SDSDSKDSTSDSSDDDSKSGNGNSDSDSDSEG 942
Score = 147 (56.8 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 81/402 (20%), Positives = 160/402 (39%)
Query: 1105 SSTGIEELDTGCLGEEVDGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENANW 1164
SS + D+ + D E D S S + + SD D + ++ +++
Sbjct: 548 SSDSSDSSDSSDSSDSSDSSESS-DSSDSSDSSDSSDSSDSSDSSDSSDSSDSDSNDSSD 606
Query: 1165 DSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEAS 1224
S++ S D E +S SS +E + S D + + S S +E+S
Sbjct: 607 SSDSSDSSDSSDSSESSDSSDSSDSSD-SSESSESSESSDSSDSSDSSDSSDSSESSESS 665
Query: 1225 WGESSCDKWENVGSPAAKSF-SEWGTEASWGKSFGDKPENV-SPAAKTSSGWGSEASWGK 1282
S D ++ S ++ S S +++S D ++ S + +S S++S
Sbjct: 666 DSSDSSDSSDSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSDSSDSDSSDSSDSS 725
Query: 1283 SSGDRQENVGGSASKPLSGWGAKASWGKS-SEDKLEEVETTVAKPSS-AWGTEASWDKSS 1340
S D ++ S S S + S S S D + +++ + SS + + S D S
Sbjct: 726 DSSDSSDSSDSSDSSDSSNSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSD 785
Query: 1341 EVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTK-A 1399
+ +++ S +++ DS SSD S+ D +++ +S + S+ + D+ +
Sbjct: 786 SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNSSDSSDSSDSSDSSDSSDS 845
Query: 1400 SWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDA 1459
S + + D D S+ NSS + + S+ G S S ++ S + D+
Sbjct: 846 SDSSDSSDSSDSSDSS--NSSDSSDSSDGDSSDGDSSDSDSSDSDSSNSSDSDSSDSSDS 903
Query: 1460 KGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSN 1501
+D S + +DD S +++++S S +
Sbjct: 904 SSSDSSDSDSDSKDSTSDSSDDDSKSGNGNSDSDSDSEGSDS 945
Score = 146 (56.5 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 77/378 (20%), Positives = 146/378 (38%)
Query: 1105 SSTGIEELDTGCLGEEVDG-LEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENAN 1163
SS + D+ + D D D S S + + SD D D S + E++
Sbjct: 581 SSDSSDSSDSSDSSDSSDSDSNDSSDSSDSSDSSDSSDSSESSDS-SDSSDSSDSSESSE 639
Query: 1164 WDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEA 1223
SE+ S D + +S SS + + S D + + S S +++
Sbjct: 640 -SSESSDSSDSSDSSDSSDSSESSESSD--SSDSSDSSDSDSSDSSDSSDSSDSSDSSDS 696
Query: 1224 SWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKS 1283
S S D ++ S ++ S S +++S D ++ S ++ +S+ S++S
Sbjct: 697 SDSSDSSDSSDSSDSDSSDSDSSDSSDSSDSSDSSDSSDS-SDSSDSSNSDSSDSSDSSD 755
Query: 1284 SGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVT 1343
S D ++ S S S + +S S D + +++ + SS + SS+ +
Sbjct: 756 SSDSSDSSDSSDSSDSSD-SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSS 814
Query: 1344 LEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKT 1403
++ + + S +++ DS SSD S+ D ++++ S + S +S + +
Sbjct: 815 DSSDSSDSSDSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDGDS 874
Query: 1404 KALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTD 1463
D D S ++S+S D S DSS ++ K + G
Sbjct: 875 SDGDSSDSDSSDSDSSNSSDSDSSDSSDSSSSDSSDSDSDSKDSTSDSSDDDSKSGNGNS 934
Query: 1464 DSCWGKQKLTENAKGTDD 1481
DS + N +DD
Sbjct: 935 DSDSDSEGSDSNHSTSDD 952
Score = 135 (52.6 bits), Expect = 0.00013, P = 0.00013
Identities = 75/409 (18%), Positives = 163/409 (39%)
Query: 1156 ENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGK--SSDDKLEKAGSPS 1213
E+ + + D+ ++ + + + TS E +G ++ G+ SSDD + S S
Sbjct: 451 ESNGSDGSDDANSESANENGNHGDASYTSDESSDNGGDSDSYAGEDDSSDDTSDTDDSDS 510
Query: 1214 RKPSGWGTEASWGESSCDKWENVGSPAAKS-FSEWGTEASWGKSFGDKPENVSPAAKTSS 1272
+E ES +N +KS S+ +++S D ++ + + S
Sbjct: 511 NGDDDSESEDK-DESDNSNHDNDSDSESKSDSSDSDSDSSDSSDSSDSSDSSDSSDSSES 569
Query: 1273 GWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKS-SEDKLEEVETTVAKPSSAWG 1331
S++S S D ++ S S S + S S S D + +++ + SS
Sbjct: 570 SDSSDSSDSSDSSDSSDSSDSSDSSDSSDSDSNDSSDSSDSSDSSDSSDSSESSDSSDSS 629
Query: 1332 TEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEE 1391
+ +SSE + ++ + + S +++ +S +SSD S+ D +++ +S + S+
Sbjct: 630 DSSDSSESSESSESSDSSDSSD--SSDSSDSSESSESSDSSDSSDSSDSDSSDSSDSSDS 687
Query: 1392 NSGWDTK-ASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQ 1450
+ D+ +S + + D D S +S S + S+ + S +++ S
Sbjct: 688 SDSSDSSDSSDSSDSSDSSDSSDSDSSDSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSDS 747
Query: 1451 IGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATG 1510
+ D+ + DS ++++ +D S + + S SS++ D D++
Sbjct: 748 SDSSDSSDSSDSSDSSDSSDS-SDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSD 806
Query: 1511 GSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDST 1559
S++ + N +S S + + S + DS+
Sbjct: 807 SSDSSDSSDSSDSSDSSDSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSS 855
>SGD|S000001800 [details] [associations]
symbol:SRP40 "Nucleolar serine-rich protein" species:4932
"Saccharomyces cerevisiae" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA] SGD:S000001800
Pfam:PF05022 GO:GO:0005730 GO:GO:0006913 EMBL:BK006944 EMBL:X73541
GeneTree:ENSGT00700000104548 eggNOG:NOG318801 InterPro:IPR007718
RefSeq:NP_013018.3 GeneID:853967 KEGG:sce:YKR092C KO:K02927
RefSeq:NP_013020.3 GeneID:853969 KEGG:sce:YKR094C EMBL:L11275
EMBL:Z28317 PIR:S38170 ProteinModelPortal:P32583 DIP:DIP-2115N
IntAct:P32583 MINT:MINT-472548 STRING:P32583 PaxDb:P32583
EnsemblFungi:YKR092C CYGD:YKR092c OMA:DAXESAR OrthoDB:EOG4M68TB
NextBio:975404 Genevestigator:P32583 GermOnline:YKR092C
Uniprot:P32583
Length = 406
Score = 166 (63.5 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 81/369 (21%), Positives = 154/369 (41%)
Query: 1172 KSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCD 1231
K E+K +S SS + + SS + + S S S +++S ESS
Sbjct: 19 KEIEEKSSSSSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSS 78
Query: 1232 KWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGK----SSGDR 1287
+ S ++ S SE +E+ S G + S + ++SS SE K S +
Sbjct: 79 SSSSSSSSSSSSDSESSSESD-SSSSGSSSSSSSSSDESSSESESEDETKKRARESDNED 137
Query: 1288 QENVGGSASKPLSGWGAKASW-GKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEK 1346
+ + ++P S +++S G SS + E + + SS+ + + + SE +
Sbjct: 138 AKETKKAKTEPESSSSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQS 197
Query: 1347 VAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASW-KTKA 1405
++ + + S +++ S SSD S+ +++++S + S+ +S D+ S + +
Sbjct: 198 SSSSSSSDSSS-DSDSSSSDSSSD-SDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSS 255
Query: 1406 LDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDS 1465
D D ++ ++S S + D + ++ + +A+E N + S
Sbjct: 256 SDSSSDESTSSDSSDS--DSDSDSGSSSELETKEATADESKAEETPASSNESTPSASSSS 313
Query: 1466 CWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDAT--GGSETEMQVWGQSR 1523
KL A GTD+ G++KH + AW+L D T G + T WG+
Sbjct: 314 --SANKLNIPA-GTDEIKEGQRKHFSRVDRSKINFEAWELTDNTYKGAAGT----WGEKA 366
Query: 1524 KEPFKKNRG 1532
E + RG
Sbjct: 367 NEKLGRVRG 375
Score = 159 (61.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 87/346 (25%), Positives = 143/346 (41%)
Query: 1207 EKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSP 1266
EK+ S S S + +S SS + G ++ S S + +S D + S
Sbjct: 23 EKSSSSSSSSSSSSSSSSSSSSSSS---SSGESSSSSSSSSSSSSSDSSDSSDSESSSSS 79
Query: 1267 AAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSED---KLEEVETTV 1323
++ +SS S +S +SS + + GS+S S +S +S ++ + E +
Sbjct: 80 SSSSSSS--SSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNED 137
Query: 1324 AKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATAS 1383
AK + TE SSE + ++ +E S G+E+ DS SS S D + + S
Sbjct: 138 AKETKKAKTEPESSSSSESSSSGSSSSSE---SESGSES-DSDSSSSSSSSSDSESDSES 193
Query: 1384 WGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSAN 1443
++ S +S D+ + + + D D S+ +SSS + D + DSS S +
Sbjct: 194 DSQSSSSSSSS-DSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDS 252
Query: 1444 EKSIVHQIGGWNVPDAKGTD-DSCWGKQKLTENAKGTDDSSWGKQKH-TENESPQPASS- 1500
S D+ +D DS G E + T D S ++ + NES ASS
Sbjct: 253 SSSSDSSSDESTSSDSSDSDSDSDSGSSSELETKEATADESKAEETPASSNESTPSASSS 312
Query: 1501 ---NAWDLPDATGGSETEMQVWGQSRKEPFKKN-RGWASSSGEWKG 1542
N ++P T + E Q SR + K N W + +KG
Sbjct: 313 SSANKLNIPAGTDEIK-EGQRKHFSRVDRSKINFEAWELTDNTYKG 357
Score = 147 (56.8 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 77/319 (24%), Positives = 136/319 (42%)
Query: 1242 KSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSG 1301
K E + +S S + S ++ +SSG S +S SS ++ S S+ S
Sbjct: 19 KEIEEKSSSSSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSS 78
Query: 1302 WGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSS-----EVTLEKVAAPAENPLS 1356
+ +S SS D E+ + S+ + +S D+SS E +K A ++N +
Sbjct: 79 SSSSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNEDA 138
Query: 1357 GWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAV 1416
+A+ +SS SE ++++S +GSE +S D+ +S + + D D S
Sbjct: 139 KETKKAKTEPESSSSSESSSSGSSSSSESESGSESDS--DSSSS-SSSSSDSESDSESDS 195
Query: 1417 ENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENA 1476
++SSS + D S+ DSS ++ S + D+ DS ++
Sbjct: 196 QSSSS--SSSSDSSSDS--DSSSSDSSSDSDSSSSSSSSSSDSDSDSDS-----SSDSDS 246
Query: 1477 KGTDDSSWGKQKHTENESPQPASSNAWDLP-DATGGSETEMQVW----GQSRKE--PFKK 1529
G+ DSS +++ S + SS++ D D+ GS +E++ +S+ E P
Sbjct: 247 SGSSDSS----SSSDSSSDESTSSDSSDSDSDSDSGSSSELETKEATADESKAEETPASS 302
Query: 1530 NRGWASSSGEWKGKK-NRP 1547
N S+S K N P
Sbjct: 303 NESTPSASSSSSANKLNIP 321
Score = 136 (52.9 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 75/325 (23%), Positives = 131/325 (40%)
Query: 1155 LENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSR 1214
+E K +++ S + SS + SS + + SSD ++ S S
Sbjct: 21 IEEKSSSSSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSS 80
Query: 1215 KPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGW 1274
S + +S ESS + ++ S ++ S S E+S D E A ++ +
Sbjct: 81 SSSSSSSSSSDSESSSES-DSSSSGSSSSSSSSSDESSSESESED--ETKKRARESDNED 137
Query: 1275 GSEASWGK----SSGDRQENVGGSASKPLSGWGAKA-SWGKSSEDKLEEVETTVAKPSSA 1329
E K SS + + GS+S S G+++ S SS + E+ S +
Sbjct: 138 AKETKKAKTEPESSSSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQS 197
Query: 1330 WGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQ-DSGKSSDWSEWKDHANATASWGRNG 1388
+ +S D SS+ + +++ S + + DS SD S D + ++ S
Sbjct: 198 SSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDS----S 253
Query: 1389 SEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFS--TKGWEDSSKPSANEKS 1446
S +S D S + D D GS+ E + A E + T + S PSA+ S
Sbjct: 254 SSSDSSSDESTSSDSSDSDSDSDSGSSSELETKEATADESKAEETPASSNESTPSASSSS 313
Query: 1447 IVHQIGGWNVPDAKGTDDSCWGKQK 1471
+++ N+P GTD+ G++K
Sbjct: 314 SANKL---NIP--AGTDEIKEGQRK 333
>UNIPROTKB|F1NAU7 [details] [associations]
symbol:Gga.50341 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0009267
"cellular response to starvation" evidence=IEA] [GO:0035068
"micro-ribonucleoprotein complex" evidence=IEA] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=IEA] InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009267 GO:GO:0000932
GO:GO:0035068 GO:GO:0035278 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 OMA:TQTFNSG EMBL:AADN02023630 IPI:IPI00578145
Ensembl:ENSGALT00000009788 Uniprot:F1NAU7
Length = 1892
Score = 184 (69.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 100/439 (22%), Positives = 167/439 (38%)
Query: 1119 EEVDGLEDEFD--WSLSPEHNLCSDKPVFEDLVEDQS-WLENKQENANWDSEAD-CRKSS 1174
E V+G +F W + E +L S + E S W + + +E+ C
Sbjct: 603 ESVNGNTRKFTNGWKSTEEDDLNSQSSAVSQITEQNSAWAKTGTGDGEGSTESTGCH--- 659
Query: 1175 EDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPS-RKPSGWGTEASWGESSCDKW 1233
ED+ G + E+ + A +S ++ + P SGWG + +++ W
Sbjct: 660 EDRVATEGQNRERRKVD---QHALLQSIVNRTDL--DPRVLSNSGWG-QTPIKQNTA--W 711
Query: 1234 ENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGG 1293
+ SP + ++ GTEA WG S +TSS G ++ D G
Sbjct: 712 DTETSPRGERKTDNGTEA-WGGS----------VTQTSSSGGCVDRPSPNNNDTSSVSGW 760
Query: 1294 SASKPLSGWGAKASWGKSSEDKLEE--VETTVAKPSSAWGT----EASWDKSSEVTLEKV 1347
K + WG S G +S+ EE T + K + +WG+ ++SW+ + + +++
Sbjct: 761 GDPKSATRWGD--SKGSNSQGGWEEDSAATVMVKSNQSWGSGKEEKSSWNDTQK--MKQG 816
Query: 1348 AAPAENPLSGWGTEAQDS-GKSSDWSEWKDHANATASWGRNGSEENSGWD-----TKASW 1401
+ GW A DS G++S + W + ++S G + SGW+ +W
Sbjct: 817 WVEGQKASQGWAVSASDSWGENSRSNHWGE-TKKSSSGGSDSDRSVSGWNEPGKSNSVTW 875
Query: 1402 K-TKALDKLDDVG---SAVENSSSVWG-AREDFSTKGWEDSSKPSANEKSIVHQIGGWNV 1456
+ + + G A N S WG + +GW DSSKP + + +G W
Sbjct: 876 GGSNNTNPNNSSGWDEPAKSNQSQGWGDPPKSNQPQGWGDSSKPINSPEWNKQDVGSWGA 935
Query: 1457 PDAKGTDD-SCWGKQKLTENAKGTDDSSWGKQKHTENESPQPAS-SNAWDLPDATGGSET 1514
P A S W + K + + W E P P S ++ D T
Sbjct: 936 PSATNKPPGSGWLGGPMPAPVKEEEPTGW--------EEPSPESIRRKMEIDDGTSA--- 984
Query: 1515 EMQVWGQSRKEPFKKNRGW 1533
WG K +K W
Sbjct: 985 ----WGDPSKYNYKNVNMW 999
Score = 182 (69.1 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 111/442 (25%), Positives = 177/442 (40%)
Query: 1139 CSDKPV--FEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEK--LGTSLEKPSSGWRT 1194
C D+P D W + K DS+ +S+ WE+ T + K + W +
Sbjct: 743 CVDRPSPNNNDTSSVSGWGDPKSATRWGDSKGS---NSQGGWEEDSAATVMVKSNQSWGS 799
Query: 1195 EGAWGKSS-DD--KLEKAGSPSRKPS-GWGTEAS--WGESS-CDKWENV------GSPAA 1241
G KSS +D K+++ +K S GW AS WGE+S + W GS +
Sbjct: 800 -GKEEKSSWNDTQKMKQGWVEGQKASQGWAVSASDSWGENSRSNHWGETKKSSSGGSDSD 858
Query: 1242 KSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSG 1301
+S S W N +P SSGW A +S G +++P G
Sbjct: 859 RSVSGWNEPGKSNSVTWGGSNNTNP--NNSSGWDEPAKSNQSQGWGDPP---KSNQP-QG 912
Query: 1302 WGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDK--SSEVTLEKVAAPA-ENPLSGW 1358
WG + S E ++V +WG ++ +K S + AP E +GW
Sbjct: 913 WGDSSKPINSPEWNKQDV--------GSWGAPSATNKPPGSGWLGGPMPAPVKEEEPTGW 964
Query: 1359 GTEAQDSGKSSDWSEWKDHANATASWGRNGSEEN----SGWDTKASWKTKALDKLDDVGS 1414
+ +S + E D T++WG + S+ N + W+ + + D+ V
Sbjct: 965 EEPSPESIRRK--MEIDD---GTSAWG-DPSKYNYKNVNMWNKNVPNSSSSSDQQAQVHQ 1018
Query: 1415 AVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTE 1474
+ +SS++ ++E S GW + S P+ ++ + W P GT WG+
Sbjct: 1019 QLLSSSAM-SSKESSSGSGWGEPSTPAT---TVDNGTSAWGKPMDTGTS---WGEP--IS 1069
Query: 1475 NAKGTDDSSWGK----QKHTENESPQPAS-SNAW---DLPDATGGSETEMQVWGQSRKEP 1526
+A GT S WG Q+ P P S ++W D+P TG +T W + +E
Sbjct: 1070 DAGGT--SGWGNASLGQQAPNKPEPGPKSMQDSWCGDDMP-LTGSRQTS---WEE--EED 1121
Query: 1527 FKKNRGWASSSGEWKGKKNRPP 1548
+ +SSS E N PP
Sbjct: 1122 VEIGMWNSSSSQEANTSLNWPP 1143
Score = 48 (22.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 1519 WGQSRKEPFKKNRGWASS--SGE-WKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLD 1572
W +++ + W GE WKG N P + V S +N + T + +D
Sbjct: 1524 WPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINNLSINTVREVD 1580
Score = 38 (18.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 1647 DSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLVDE 1683
D L T SQQ ++ ++SF+ P E
Sbjct: 1390 DPNLLMKQQTPPSQQQSLHQPTMKSFLENVIPHATPE 1426
>UNIPROTKB|H0Y720 [details] [associations]
symbol:TNRC6B "Trinucleotide repeat-containing gene 6B
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR026804 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
SUPFAM:SSF46934 InterPro:IPR019486 PANTHER:PTHR31070 Pfam:PF10427
EMBL:AL022238 EMBL:Z93783 EMBL:AL031589 HGNC:HGNC:29190
ChiTaRS:TNRC6B EMBL:AL033547 EMBL:Z83847 PRIDE:H0Y720
Ensembl:ENST00000446273 Bgee:H0Y720 Uniprot:H0Y720
Length = 1391
Score = 186 (70.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 111/437 (25%), Positives = 165/437 (37%)
Query: 1148 LVEDQSWLENK-QENANWDSEADCR-KSSEDK----WEKLGTSLEKPSSGWR---TEGAW 1198
++ + W + + +++ WD E R + DK WE T K S GW ++
Sbjct: 360 VLSNTGWGQTQIKQDTVWDIEEVPRPEGKSDKGTEGWESAATQT-KNSGGWGDAPSQSNQ 418
Query: 1199 GKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFG 1258
KS +L A + + P G + ++ W G P K+ S W S + +G
Sbjct: 419 MKSGWGELS-ASTEWKDPKNTGGWNDYKNNNSSNWGG-GRPDEKTPSSWNENPSKDQGWG 476
Query: 1259 DKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKA-----SWGKSSE 1313
+ + +GWG E K+S N SASKP+SGWG +WG
Sbjct: 477 GGRQPNQGWSSGKNGWGEEVDQTKNS-----NWESSASKPVSGWGEGGQNEIGTWGNGGN 531
Query: 1314 DKL-EEVETTVAKPSSAW---GTEA-SWDKSSEVTLEKVAAPAENP-LSG-WG-TEAQDS 1365
L + K S AW G + SW+K + P P SG WG
Sbjct: 532 ASLASKGGWEDCKRSPAWNETGRQPNSWNKQHQQQQPPQQPPPPQPEASGSWGGPPPPPP 591
Query: 1366 G--KSSDWSEWKDHAN-ATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSV 1422
G + S+ S W AT EE SGW+ + K+D +++ +S
Sbjct: 592 GNVRPSN-SSWSSGPQPATPK-----DEEPSGWEEPSPQSISR--KMD-----IDDGTSA 638
Query: 1423 WGAREDFSTKG---WEDSSK--PSANEKSIVHQIGGWNVPDAKGTDD-SCWGKQKLTENA 1476
WG ++ K W+ +S+ P+ E N+P + S W K T A
Sbjct: 639 WGDPNSYNYKNVNLWDKNSQGGPAPREP---------NLPTPMTSKSASVWSKS--TPPA 687
Query: 1477 KGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQS------RKEPFKKN 1530
S+WG+ NES S W D TG S T WG + +P K+
Sbjct: 688 PDNGTSAWGEP----NES-----SPGWGEMDDTGASTTG---WGNTPANAPNAMKPNSKS 735
Query: 1531 R--GWASSSGEWKGKKN 1545
GW S G G ++
Sbjct: 736 MQDGWGESDGPVTGARH 752
Score = 168 (64.2 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 100/432 (23%), Positives = 161/432 (37%)
Query: 1150 EDQSW-LENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSG-WRTEGAWGKSSDDKLE 1207
++ SW N+ +W+ + S+++KW + S G W+ + +
Sbjct: 212 KNDSWDNNNRSTGGSWNFGP--QDSNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWS 269
Query: 1208 KAGSPSRKPSGWGTEASWGESSCDKWENVGSPA-AKSFSEWGTEASWGKSFGDKPENVSP 1266
P+ W + G + N +P +S S G+E G+S G + S
Sbjct: 270 GPNQPNSSTGAWDNQK--GHPLPENQGNAQAPCWGRSSSSTGSEVG-GQSTGSNHKAGSS 326
Query: 1267 AAKTSSGWGSEASWGKSSGDRQENVGGSASKP--LS--GWGAKASWGKSSEDKLEEVETT 1322
+ S + Q + + P LS GWG + D +EEV
Sbjct: 327 DSHNSGRRSYRPTHPDCQAVLQTLLSRTDLDPRVLSNTGWGQTQIKQDTVWD-IEEVPRP 385
Query: 1323 VAKPSSAWGTEASWDKSSEVTLEKVA---APAE-NPL-SGWG-----TEAQDSGKSSDWS 1372
K GTE W+ ++ T AP++ N + SGWG TE +D + W+
Sbjct: 386 EGKSDK--GTEG-WESAATQTKNSGGWGDAPSQSNQMKSGWGELSASTEWKDPKNTGGWN 442
Query: 1373 EWKDHANATASWGRNGSEEN--SGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFS 1430
++K+ N +++WG +E S W+ S K + + + WG D
Sbjct: 443 DYKN--NNSSNWGGGRPDEKTPSSWNENPS-KDQGWGGGRQPNQGWSSGKNGWGEEVD-Q 498
Query: 1431 TKG--WEDS-SKP-SANEKSIVHQIGGW-NVPDAKGTDDSCWG--KQKLTENAKGTDDSS 1483
TK WE S SKP S + ++IG W N +A W K+ N G +S
Sbjct: 499 TKNSNWESSASKPVSGWGEGGQNEIGTWGNGGNASLASKGGWEDCKRSPAWNETGRQPNS 558
Query: 1484 WGKQKHTENESPQ------PASSNAWD--LPDATGGSETEMQVWGQSRKEPFKKNR---G 1532
W KQ H + + PQ P +S +W P G W + K+ G
Sbjct: 559 WNKQ-HQQQQPPQQPPPPQPEASGSWGGPPPPPPGNVRPSNSSWSSGPQPATPKDEEPSG 617
Query: 1533 WASSSGEWKGKK 1544
W S + +K
Sbjct: 618 WEEPSPQSISRK 629
Score = 158 (60.7 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 96/371 (25%), Positives = 142/371 (38%)
Query: 1146 EDLVEDQSWLENKQENANWDS-------EADCRKSSEDKWEKLGTSLEKPSSGW----RT 1194
E+ +DQ W +Q N W S E D K+S WE +S KP SGW +
Sbjct: 467 ENPSKDQGWGGGRQPNQGWSSGKNGWGEEVDQTKNSN--WE---SSASKPVSGWGEGGQN 521
Query: 1195 E-GAWGKSSDDKLEKAGS--PSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEA 1251
E G WG + L G ++ W S + + P +
Sbjct: 522 EIGTWGNGGNASLASKGGWEDCKRSPAWNETGRQPNSWNKQHQQQQPPQQPPPPQPEASG 581
Query: 1252 SWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKS 1311
SWG P NV P S +SW SSG + +P SGW + S
Sbjct: 582 SWGGPPPPPPGNVRP---------SNSSW--SSGPQPATP--KDEEP-SGWEEPSPQSIS 627
Query: 1312 SEDKLEEVETTVAKPSSA-WGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSD 1370
+ +++ + P+S + WDK+S+ AP E L S +S
Sbjct: 628 RKMDIDDGTSAWGDPNSYNYKNVNLWDKNSQGG----PAPREPNLP----TPMTSKSASV 679
Query: 1371 WSEWKDHA--NATASWGRNGSEENSGW----DTKASWKTKALDKLDDVGSAVENSSSV-- 1422
WS+ A N T++WG +E + GW DT AS + + NS S+
Sbjct: 680 WSKSTPPAPDNGTSAWGEP-NESSPGWGEMDDTGASTTGWGNTPANAPNAMKPNSKSMQD 738
Query: 1423 -WGAREDFSTKGWEDSSKPSANEKSIVHQIGG-WNVPDAKGTDDS----CWG---KQKLT 1473
WG D G + PS E+ + GG WN ++G+ S WG K+++
Sbjct: 739 GWG-ESDGPVTG---ARHPSWEEE----EDGGVWNTTGSQGSASSHNSASWGQGGKKQMK 790
Query: 1474 ENAKGTDDSSW 1484
+ KG ++ SW
Sbjct: 791 CSLKGGNNDSW 801
Score = 42 (19.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 189 SRSGTPNFESQEV------ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKA 242
S G+ NF Q+ E N + V Q + T + G +Q PNS+T A
Sbjct: 222 STGGSWNFGPQDSNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWSGPNQ-PNSSTGA 280
Query: 243 W 243
W
Sbjct: 281 W 281
Score = 41 (19.5 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 235 DPNSTTKAWLEKMRTLFIRKGS-----GFSSRSVIT-GDAYK----RVNEIGVPFEIAQR 284
+PNS AW ++ RKG+ SS V T G + ++ GV F ++ R
Sbjct: 46 NPNSNPSAWPALVQEGTSRKGALETDNSNSSAQVSTVGQTSREQQSKMENAGVNFVVSGR 105
Query: 285 ITFEERVNVHN 295
E+ +HN
Sbjct: 106 ----EQAQIHN 112
Score = 39 (18.8 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 21/77 (27%), Positives = 27/77 (35%)
Query: 1501 NAWDL-PDATGGSETEM--QVWGQSRKEPFKK------NRGWASS--SG-EWKGKKNRPP 1548
N +D+ P T G T W ++ P K N W G WKG +N P
Sbjct: 1121 NQFDIIPGDTLGGHTGPAGDSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDP 1180
Query: 1549 RSPGVVNDDSTVNAMYT 1565
S V S + T
Sbjct: 1181 ESDPYVTPGSVLGGTAT 1197
>UNIPROTKB|Q9UPQ9 [details] [associations]
symbol:TNRC6B "Trinucleotide repeat-containing gene 6B
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0007219 "Notch signaling pathway" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804
PROSITE:PS50102 GO:GO:0005829 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0010467
GO:GO:0006417 GO:GO:0000166 EMBL:CH471095 Gene3D:3.30.70.330
GO:GO:0007219 GO:GO:0003723 GO:GO:0031047 GO:GO:0000932
SUPFAM:SSF46934 InterPro:IPR019486 PANTHER:PTHR31070 Pfam:PF10427
EMBL:AL022238 HOVERGEN:HBG062594 HOGENOM:HOG000049171 EMBL:AB029016
EMBL:AK294519 EMBL:Z93783 EMBL:AL031589 EMBL:BC028626
IPI:IPI00152296 IPI:IPI00873067 IPI:IPI00940033
RefSeq:NP_001020014.1 RefSeq:NP_001155973.1 RefSeq:NP_055903.2
UniGene:Hs.372082 ProteinModelPortal:Q9UPQ9 SMR:Q9UPQ9
DIP:DIP-29624N DIP:DIP-44174N IntAct:Q9UPQ9 MINT:MINT-2822586
STRING:Q9UPQ9 PhosphoSite:Q9UPQ9 DMDM:229904901 PaxDb:Q9UPQ9
PRIDE:Q9UPQ9 Ensembl:ENST00000301923 Ensembl:ENST00000335727
Ensembl:ENST00000402203 Ensembl:ENST00000454349 GeneID:23112
KEGG:hsa:23112 UCSC:uc003aym.3 UCSC:uc003ayn.4 UCSC:uc003ayo.3
CTD:23112 GeneCards:GC22P040440 HGNC:HGNC:29190 HPA:HPA003180
MIM:610740 neXtProt:NX_Q9UPQ9 PharmGKB:PA134992981 eggNOG:NOG260411
OMA:NETGRQP ChiTaRS:TNRC6B GenomeRNAi:23112 NextBio:44311
ArrayExpress:Q9UPQ9 Bgee:Q9UPQ9 CleanEx:HS_TNRC6B
Genevestigator:Q9UPQ9 GermOnline:ENSG00000100354 Uniprot:Q9UPQ9
Length = 1833
Score = 186 (70.5 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 111/437 (25%), Positives = 165/437 (37%)
Query: 1148 LVEDQSWLENK-QENANWDSEADCR-KSSEDK----WEKLGTSLEKPSSGWR---TEGAW 1198
++ + W + + +++ WD E R + DK WE T K S GW ++
Sbjct: 617 VLSNTGWGQTQIKQDTVWDIEEVPRPEGKSDKGTEGWESAATQT-KNSGGWGDAPSQSNQ 675
Query: 1199 GKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFG 1258
KS +L A + + P G + ++ W G P K+ S W S + +G
Sbjct: 676 MKSGWGELS-ASTEWKDPKNTGGWNDYKNNNSSNWGG-GRPDEKTPSSWNENPSKDQGWG 733
Query: 1259 DKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKA-----SWGKSSE 1313
+ + +GWG E K+S N SASKP+SGWG +WG
Sbjct: 734 GGRQPNQGWSSGKNGWGEEVDQTKNS-----NWESSASKPVSGWGEGGQNEIGTWGNGGN 788
Query: 1314 DKL-EEVETTVAKPSSAW---GTEA-SWDKSSEVTLEKVAAPAENP-LSG-WG-TEAQDS 1365
L + K S AW G + SW+K + P P SG WG
Sbjct: 789 ASLASKGGWEDCKRSPAWNETGRQPNSWNKQHQQQQPPQQPPPPQPEASGSWGGPPPPPP 848
Query: 1366 G--KSSDWSEWKDHAN-ATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSV 1422
G + S+ S W AT EE SGW+ + K+D +++ +S
Sbjct: 849 GNVRPSN-SSWSSGPQPATPK-----DEEPSGWEEPSPQSISR--KMD-----IDDGTSA 895
Query: 1423 WGAREDFSTKG---WEDSSK--PSANEKSIVHQIGGWNVPDAKGTDD-SCWGKQKLTENA 1476
WG ++ K W+ +S+ P+ E N+P + S W K T A
Sbjct: 896 WGDPNSYNYKNVNLWDKNSQGGPAPREP---------NLPTPMTSKSASVWSKS--TPPA 944
Query: 1477 KGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQS------RKEPFKKN 1530
S+WG+ NES S W D TG S T WG + +P K+
Sbjct: 945 PDNGTSAWGEP----NES-----SPGWGEMDDTGASTTG---WGNTPANAPNAMKPNSKS 992
Query: 1531 R--GWASSSGEWKGKKN 1545
GW S G G ++
Sbjct: 993 MQDGWGESDGPVTGARH 1009
Score = 168 (64.2 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 100/432 (23%), Positives = 161/432 (37%)
Query: 1150 EDQSW-LENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSG-WRTEGAWGKSSDDKLE 1207
++ SW N+ +W+ + S+++KW + S G W+ + +
Sbjct: 469 KNDSWDNNNRSTGGSWNFGP--QDSNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWS 526
Query: 1208 KAGSPSRKPSGWGTEASWGESSCDKWENVGSPA-AKSFSEWGTEASWGKSFGDKPENVSP 1266
P+ W + G + N +P +S S G+E G+S G + S
Sbjct: 527 GPNQPNSSTGAWDNQK--GHPLPENQGNAQAPCWGRSSSSTGSEVG-GQSTGSNHKAGSS 583
Query: 1267 AAKTSSGWGSEASWGKSSGDRQENVGGSASKP--LS--GWGAKASWGKSSEDKLEEVETT 1322
+ S + Q + + P LS GWG + D +EEV
Sbjct: 584 DSHNSGRRSYRPTHPDCQAVLQTLLSRTDLDPRVLSNTGWGQTQIKQDTVWD-IEEVPRP 642
Query: 1323 VAKPSSAWGTEASWDKSSEVTLEKVA---APAE-NPL-SGWG-----TEAQDSGKSSDWS 1372
K GTE W+ ++ T AP++ N + SGWG TE +D + W+
Sbjct: 643 EGKSDK--GTEG-WESAATQTKNSGGWGDAPSQSNQMKSGWGELSASTEWKDPKNTGGWN 699
Query: 1373 EWKDHANATASWGRNGSEEN--SGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFS 1430
++K+ N +++WG +E S W+ S K + + + WG D
Sbjct: 700 DYKN--NNSSNWGGGRPDEKTPSSWNENPS-KDQGWGGGRQPNQGWSSGKNGWGEEVD-Q 755
Query: 1431 TKG--WEDS-SKP-SANEKSIVHQIGGW-NVPDAKGTDDSCWG--KQKLTENAKGTDDSS 1483
TK WE S SKP S + ++IG W N +A W K+ N G +S
Sbjct: 756 TKNSNWESSASKPVSGWGEGGQNEIGTWGNGGNASLASKGGWEDCKRSPAWNETGRQPNS 815
Query: 1484 WGKQKHTENESPQ------PASSNAWD--LPDATGGSETEMQVWGQSRKEPFKKNR---G 1532
W KQ H + + PQ P +S +W P G W + K+ G
Sbjct: 816 WNKQ-HQQQQPPQQPPPPQPEASGSWGGPPPPPPGNVRPSNSSWSSGPQPATPKDEEPSG 874
Query: 1533 WASSSGEWKGKK 1544
W S + +K
Sbjct: 875 WEEPSPQSISRK 886
Score = 158 (60.7 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 96/371 (25%), Positives = 142/371 (38%)
Query: 1146 EDLVEDQSWLENKQENANWDS-------EADCRKSSEDKWEKLGTSLEKPSSGW----RT 1194
E+ +DQ W +Q N W S E D K+S WE +S KP SGW +
Sbjct: 724 ENPSKDQGWGGGRQPNQGWSSGKNGWGEEVDQTKNSN--WE---SSASKPVSGWGEGGQN 778
Query: 1195 E-GAWGKSSDDKLEKAGS--PSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEA 1251
E G WG + L G ++ W S + + P +
Sbjct: 779 EIGTWGNGGNASLASKGGWEDCKRSPAWNETGRQPNSWNKQHQQQQPPQQPPPPQPEASG 838
Query: 1252 SWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKS 1311
SWG P NV P S +SW SSG + +P SGW + S
Sbjct: 839 SWGGPPPPPPGNVRP---------SNSSW--SSGPQPATP--KDEEP-SGWEEPSPQSIS 884
Query: 1312 SEDKLEEVETTVAKPSSA-WGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSD 1370
+ +++ + P+S + WDK+S+ AP E L S +S
Sbjct: 885 RKMDIDDGTSAWGDPNSYNYKNVNLWDKNSQGG----PAPREPNLP----TPMTSKSASV 936
Query: 1371 WSEWKDHA--NATASWGRNGSEENSGW----DTKASWKTKALDKLDDVGSAVENSSSV-- 1422
WS+ A N T++WG +E + GW DT AS + + NS S+
Sbjct: 937 WSKSTPPAPDNGTSAWGEP-NESSPGWGEMDDTGASTTGWGNTPANAPNAMKPNSKSMQD 995
Query: 1423 -WGAREDFSTKGWEDSSKPSANEKSIVHQIGG-WNVPDAKGTDDS----CWG---KQKLT 1473
WG D G + PS E+ + GG WN ++G+ S WG K+++
Sbjct: 996 GWG-ESDGPVTG---ARHPSWEEE----EDGGVWNTTGSQGSASSHNSASWGQGGKKQMK 1047
Query: 1474 ENAKGTDDSSW 1484
+ KG ++ SW
Sbjct: 1048 CSLKGGNNDSW 1058
Score = 42 (19.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 189 SRSGTPNFESQEV------ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKA 242
S G+ NF Q+ E N + V Q + T + G +Q PNS+T A
Sbjct: 479 STGGSWNFGPQDSNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWSGPNQ-PNSSTGA 537
Query: 243 W 243
W
Sbjct: 538 W 538
Score = 41 (19.5 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 235 DPNSTTKAWLEKMRTLFIRKGS-----GFSSRSVIT-GDAYK----RVNEIGVPFEIAQR 284
+PNS AW ++ RKG+ SS V T G + ++ GV F ++ R
Sbjct: 303 NPNSNPSAWPALVQEGTSRKGALETDNSNSSAQVSTVGQTSREQQSKMENAGVNFVVSGR 362
Query: 285 ITFEERVNVHN 295
E+ +HN
Sbjct: 363 ----EQAQIHN 369
Score = 39 (18.8 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 21/77 (27%), Positives = 27/77 (35%)
Query: 1501 NAWDL-PDATGGSETEM--QVWGQSRKEPFKK------NRGWASS--SG-EWKGKKNRPP 1548
N +D+ P T G T W ++ P K N W G WKG +N P
Sbjct: 1435 NQFDIIPGDTLGGHTGPAGDSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDP 1494
Query: 1549 RSPGVVNDDSTVNAMYT 1565
S V S + T
Sbjct: 1495 ESDPYVTPGSVLGGTAT 1511
>MGI|MGI:109172 [details] [associations]
symbol:Dspp "dentin sialophosphoprotein" species:10090 "Mus
musculus" [GO:0005576 "extracellular region" evidence=IEA]
[GO:0005578 "proteinaceous extracellular matrix" evidence=IEA]
[GO:0031012 "extracellular matrix" evidence=ISO] [GO:0031214
"biomineral tissue development" evidence=IEA] [GO:0071460 "cellular
response to cell-matrix adhesion" evidence=IDA] MGI:MGI:109172
GO:GO:0005578 eggNOG:NOG12793 GO:GO:0031214 HOVERGEN:HBG098252
OrthoDB:EOG41RPVG GO:GO:0071460 EMBL:U67916 EMBL:AJ002141
EMBL:AF135799 IPI:IPI00828889 UniGene:Mm.319832
ProteinModelPortal:P97399 STRING:P97399 PhosphoSite:P97399
PaxDb:P97399 PRIDE:P97399 UCSC:uc008ykd.1 CleanEx:MM_DSPP
Genevestigator:P97399 GermOnline:ENSMUSG00000053268 Uniprot:P97399
Length = 934
Score = 167 (63.8 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 78/376 (20%), Positives = 154/376 (40%)
Query: 1150 EDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKA 1209
++ S E+K ++++ ++ S D + +S SS ++ + SS D + +
Sbjct: 537 DNSSDSESKSDSSDSSDDSSDSSDSSDSSDSSDSSDSSDSSD-SSDSSDSNSSSDSSDSS 595
Query: 1210 GSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWG--TEASWGKSFGDKPENVSPA 1267
GS S ++S S D ++ S + S+ +++S S D ++ S +
Sbjct: 596 GSSDSSDSSDTCDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSSSSDSSDSSSCS 655
Query: 1268 AKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPS 1327
+ S S++S S D + S+S S + +S SS D + +++ + S
Sbjct: 656 DSSDSSDSSDSSDSSDSSDSSSSDSSSSSN--SSDSSDSSDSSSSSDSSDSSDSSDSSDS 713
Query: 1328 SAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRN 1387
S G+ S D S+ + +++ S +++ DS SSD SE D +N++ S +
Sbjct: 714 S--GSSDSSDSSASSDSSSSSDSSDSSSSSDSSDSSDSSDSSDSSESSDSSNSSDSSDSS 771
Query: 1388 GSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSI 1447
S ++S D+ S + + D D S+ + SS D S S S++
Sbjct: 772 DSSDSS--DSSDS--SDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDS 827
Query: 1448 VHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPD 1507
+ D+ + DS ++++ +D S + + S SSN+ D D
Sbjct: 828 SDSSDSSDSSDSSDSSDSSDSSDS-SDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSD 886
Query: 1508 ATGGSETEMQVWGQSR 1523
+ + G S+
Sbjct: 887 SDSKDSSSDSSDGDSK 902
Score = 166 (63.5 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 101/460 (21%), Positives = 181/460 (39%)
Query: 1073 TGSRFDLLWQTENEEFNQDDGVDVYDFLH-MVRSSTGIEELDTGCLGEEVDGLEDEFDWS 1131
+GSR D + T +E + D+ D + S+G + D+ G+ +DE D
Sbjct: 476 SGSRGDASY-TSDESSDDDNDSDSHAGEDDSSDDSSGDGDSDSNGDGDSESEDKDESD-- 532
Query: 1132 LSPEHNLCSD---KPVFEDLVEDQSWLENKQENANWDSEADCRKSSE-----------DK 1177
S +H+ SD K D +D S + ++++ +D SS+ D
Sbjct: 533 -SSDHDNSSDSESKSDSSDSSDDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNSSSDS 591
Query: 1178 WEKLGTSLEKPSSGWRTEGAWGKSSD--DKLEKAGSPSRKPSGWGTEASWGESSCDKWEN 1235
+ G+S SS SSD D + + S S +++S SS D ++
Sbjct: 592 SDSSGSSDSSDSSDTCDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSSSSDSSDS 651
Query: 1236 VGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSA 1295
S + S S +++S D + S ++ SS S++S SS D ++ S
Sbjct: 652 -SSCSDSSDSSDSSDSSDSSDSSDSSSSDSSSSSNSSD-SSDSSDSSSSSDSSDSSDSSD 709
Query: 1296 SKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPL 1355
S SG + SS+ + + S + + S D S + +++
Sbjct: 710 SSDSSGSSDSSDSSASSDSSSSSDSSDSSSSSDSSDSSDSSDSSDSSESSDSSNSSDSSD 769
Query: 1356 SGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSA 1415
S +++ DS SSD S+ D +N++ S + S ++S + +S + + D D S+
Sbjct: 770 SSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSD-SSNSSDSSDSSDSSDSSDSS 828
Query: 1416 VENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTEN 1475
+ SS D S S S++ + D+ + DS +
Sbjct: 829 DSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSD 888
Query: 1476 AK-GTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSET 1514
+K + DSS G K S + SN+ D + GS++
Sbjct: 889 SKDSSSDSSDGDSKSGNGNSDSNSDSNS-DSDSDSEGSDS 927
Score = 148 (57.2 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 83/420 (19%), Positives = 165/420 (39%)
Query: 1083 TENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLEDEFDWSLSPEHNLCSDK 1142
+E+E+ ++ D D +D SS + D+ ++ D D S S + + SD
Sbjct: 523 SESEDKDESDSSD-HD-----NSSDSESKSDSSDSSDDSSDSSDSSDSSDSSDSSDSSDS 576
Query: 1143 PVFEDLVEDQSWLENKQENANWDS-EADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKS 1201
D + S ++ + + DS ++ S D + +S SS ++ +
Sbjct: 577 SDSSDSSDSNSSSDSSDSSGSSDSSDSSDTCDSSDSSDSSDSSDSSDSSD-SSDSSDSSD 635
Query: 1202 SDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKP 1261
S D + + S S +++S S D ++ S ++ S S + +S D
Sbjct: 636 SSDSSDSSSSSDSSDSSSCSDSSDSSDSSDSSDS--SDSSDSSSSDSSSSSNSSDSSDSS 693
Query: 1262 ENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVET 1321
++ S + + S S++S S D ++ S S S +S SS+ +
Sbjct: 694 DSSSSSDSSDSSDSSDSSDSSGSSDSSDSSASSDSSSSSDSSDSSSSSDSSDSSDSSDSS 753
Query: 1322 TVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANAT 1381
++ S + + S D S + +++ S + + DS SSD S+ D +N++
Sbjct: 754 DSSESSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSS 813
Query: 1382 ASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPS 1441
S + S ++S + +S + + D D S+ + SS D S S S
Sbjct: 814 DSSDSSDSSDSSD-SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDS 872
Query: 1442 ANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSN 1501
++ + + + DS G K + G DS+ ++++S + + SN
Sbjct: 873 SDSSDSSNSSDSSDSDSKDSSSDSSDGDSK---SGNGNSDSNSDSNSDSDSDS-EGSDSN 928
Score = 144 (55.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 93/443 (20%), Positives = 174/443 (39%)
Query: 1160 ENANWDSEADCRKSSEDKWEKLG----TSLEKPSSGWRTEGAWGK--SSDDKLEKAGSPS 1213
+ +N E+D S ++ G TS E ++ G+ SSDD S S
Sbjct: 458 DESNGSDESDTNSESANESGSRGDASYTSDESSDDDNDSDSHAGEDDSSDDSSGDGDSDS 517
Query: 1214 RKPSGWGTEASWGESSCDKWENVGSPAAKS-FSEWGTEASWGKSFGDKPENVSPAAKTSS 1272
+E ES +N +KS S+ ++S D ++ + + S
Sbjct: 518 NGDGDSESEDK-DESDSSDHDNSSDSESKSDSSDSSDDSSDSSDSSDSSDSSDSSDSSDS 576
Query: 1273 GWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSS-AWG 1331
S++S SS D ++ G S S S +S S D + +++ + SS +
Sbjct: 577 SDSSDSSDSNSSSDSSDSSGSSDSSDSSDT-CDSSDSSDSSDSSDSSDSSDSSDSSDSSD 635
Query: 1332 TEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEE 1391
+ S D SS ++ +++ S +++ DS SSD S +++ +S + S+
Sbjct: 636 SSDSSDSSSSSDSSDSSSCSDSSDSSDSSDSSDSSDSSDSSSSDSSSSSNSSDSSDSSDS 695
Query: 1392 NSGWDTKASWKTKALDKLDDVGS-------AVENSSSVWGAREDFSTKGWEDSSKPSANE 1444
+S D+ S + + D D GS A +SSS + + S+ DSS S +
Sbjct: 696 SSSSDSSDS--SDSSDSSDSSGSSDSSDSSASSDSSSSSDSSDSSSSSDSSDSSDSSDSS 753
Query: 1445 KSIVHQIGGWNVPDAKGTDDSCWGKQKL--TENAKGTDDSSWGKQKHTENESPQPASSNA 1502
S N D+ + DS ++++ +D S+ + + S SSN+
Sbjct: 754 DSSESSDSS-NSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNS 812
Query: 1503 WDLPDATGGSET-EMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDSTVN 1561
D D++ S++ + S + +S S + + S + DS+ +
Sbjct: 813 SDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDS 872
Query: 1562 AMYTVTRQRLDMFTSEEQDILSD 1584
+ + + D S+ +D SD
Sbjct: 873 SDSSDSSNSSDSSDSDSKDSSSD 895
Score = 141 (54.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 72/345 (20%), Positives = 144/345 (41%)
Query: 1105 SSTGIEELDTGCLGEEVDGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENANW 1164
SS + DT C + D D S S + + SD D + S ++ ++
Sbjct: 597 SSDSSDSSDT-CDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSSSSDSSDSSSCS 655
Query: 1165 DSE-----ADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGW 1219
DS +D SS+ S +S ++ + SS D + + S S
Sbjct: 656 DSSDSSDSSDSSDSSDSSDSSSSDSSSSSNSSDSSDSSDSSSSSDSSDSSDSSDSSDSSG 715
Query: 1220 GTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEAS 1279
+++S +S D + S + S S+ +++S D E+ + + S S++S
Sbjct: 716 SSDSSDSSASSDSSSSSDSSDSSSSSD-SSDSSDSSDSSDSSESSDSSNSSDSSDSSDSS 774
Query: 1280 WGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKS 1339
S D ++ S S S + +S S D +++ + SS +++S D S
Sbjct: 775 DSSDSSDSSDSSDSSDSSNSSD-SSDSSDSSDSSDSSNSSDSSDSSDSSD-SSDSS-DSS 831
Query: 1340 SEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKA 1399
+ +++ S +++ DS SSD S+ D ++++ S + S ++S D+K
Sbjct: 832 DSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSDSKD 891
Query: 1400 SWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANE 1444
S + + D G+ +S+S + D ++G DS+ ++++
Sbjct: 892 S-SSDSSDGDSKSGNGNSDSNSDSNSDSDSDSEG-SDSNHSTSDD 934
Score = 137 (53.3 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 85/392 (21%), Positives = 154/392 (39%)
Query: 1127 EFDWSLSPEHNLCSDKPVFEDLVEDQSWLENK-QENANWDSEADCRKSSEDKWEKLGTSL 1185
E D SP+ SDKP + E + N S +D S E E +
Sbjct: 397 ELDKRNSPKQGE-SDKP--QGTAEKSAAHSNLGHSRIGSSSNSDGHDSYEFDDESMQG-- 451
Query: 1186 EKPSSGWRTEGAWGKSSDDKLEKAG-SPSRKPSGWGTEASWGESSCDKWENVGSPAAKSF 1244
+ P S + G+ SD E A S SR + + ++ S + + D + G +
Sbjct: 452 DDPKSSDESNGS--DESDTNSESANESGSRGDASYTSDESSDDDN-DSDSHAGEDDSSDD 508
Query: 1245 SEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKS-SGDRQENVGGSASKPLSGWG 1303
S G S GD + +S S S KS S D ++ S+ S
Sbjct: 509 SS-GDGDSDSNGDGDSESEDKDESDSSDHDNSSDSESKSDSSDSSDDSSDSSDSSDSSDS 567
Query: 1304 AKASWGKSSEDKLEEVETTVAKPSS-AWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEA 1362
+ +S S D + ++ + SS + G+ S D S + +++ S +++
Sbjct: 568 SDSSDSSDSSDSSDSSDSNSSSDSSDSSGSSDSSDSSDTCDSSDSSDSSDSSDSSDSSDS 627
Query: 1363 QDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSV 1422
DS SSD S+ D ++++ S + ++S + +S + + D D S +SS+
Sbjct: 628 SDSSDSSDSSDSSDSSSSSDSSDSSSCSDSSD-SSDSSDSSDSSDSSDSSSSDSSSSSNS 686
Query: 1423 WGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDS 1482
+ + + DSS S + S G + D+ + DS ++++ +D S
Sbjct: 687 SDSSDSSDSSSSSDSSDSSDSSDSS-DSSGSSDSSDSSASSDSSSSSDS-SDSSSSSDSS 744
Query: 1483 SWGKQKHTENESPQPASSNAWDLPDATGGSET 1514
+ + S SSN+ D D++ S++
Sbjct: 745 DSSDSSDSSDSSESSDSSNSSDSSDSSDSSDS 776
>UNIPROTKB|F1LSM1 [details] [associations]
symbol:Tnrc6b "Protein Tnrc6b" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804 RGD:621428
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 SUPFAM:SSF46934
InterPro:IPR019486 PANTHER:PTHR31070 Pfam:PF10427 IPI:IPI00389253
Ensembl:ENSRNOT00000037695 ArrayExpress:F1LSM1 Uniprot:F1LSM1
Length = 1752
Score = 187 (70.9 bits), Expect = 7.9e-08, Sum P(3) = 7.9e-08
Identities = 112/459 (24%), Positives = 167/459 (36%)
Query: 1131 SLSPEHNLCSDKPVFEDLVEDQSWLENKQENANWDS---EADCRKSSEDKWEKLGTSLEK 1187
S P H C + V + L+ N W + D E+ G S +K
Sbjct: 562 SYRPAHPDC--QAVLQTLLSRTDLDPRVLSNTGWGQTQIKQDTVWDIEEVPRPEGKS-DK 618
Query: 1188 PSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGT-EAS--WGE-SSCDKWENVGSPAAKS 1243
+ GW + K+S + ++ SGWG AS W + S W + + +
Sbjct: 619 GTEGWESAATQTKNSGGWGDAPSQSNQMKSGWGELSASTEWKDPKSTGGWNDYKN---NN 675
Query: 1244 FSEWG-------TEASWGKSFGDKPENVSPAAKTSSGWGS-EASWGKSSGD-RQENVGGS 1294
S WG T +SW +S K + + + GW S + WG+ + N S
Sbjct: 676 SSNWGGGRADEKTPSSWNES-SCKDQGWGGGRQPNQGWTSGKNGWGEEVDQVKNNNWESS 734
Query: 1295 ASKPLSGWGAKA-----SWGKSSEDKL-EEVETTVAKPSSAW---GTEA-SWDKSSEVTL 1344
A+KP+SGWG +WG L + K S AW G + SW+K +
Sbjct: 735 ANKPVSGWGEGGQSEIGTWGNGGNTNLASKGGWEDCKRSPAWNETGRQPNSWNKQHQQQQ 794
Query: 1345 EKVAAPAENPLSGWG---TEAQDSGKSSDWSEWKDHAN-ATASWGRNGSEENSGWDTKAS 1400
++ P WG Q + + S+ S W AT +E SGW+ +
Sbjct: 795 QQPPPPQPEASGSWGGPPPPPQGNVRPSN-SNWSSGPQPATPK-----DDEPSGWEEPSP 848
Query: 1401 WKTKALDKLDDVGSAVENSSSVWGAREDFSTKG---WEDSSK--PSANEKSIVHQIGGWN 1455
K+D +++ +S WG ++ K W+ +S+ P+ E N
Sbjct: 849 QSISR--KMD-----IDDGTSAWGDPNSYNYKNVNLWDKNSQGGPAPREP---------N 892
Query: 1456 VPDAK-GTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSET 1514
+P G S W K T A S+WG+ NES S W D G S T
Sbjct: 893 LPTPMTGKSASVWSKS--TPPAPDNGTSAWGEP----NES-----SPGWGEMDDAGASAT 941
Query: 1515 EMQVWGQ---SRKEPFKKNR-----GWASSSGEWKGKKN 1545
WG S K N GW S G G ++
Sbjct: 942 G---WGNTPASAPNAMKPNSKSMQDGWGESDGPVTGARH 977
Score = 168 (64.2 bits), Expect = 6.8e-06, Sum P(3) = 6.8e-06
Identities = 97/431 (22%), Positives = 161/431 (37%)
Query: 1150 EDQSW-LENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSG-WRTEGAWGKSSDDKLE 1207
+ SW N+ +W+ + S+++KW + S G W+ + +
Sbjct: 439 QSDSWDNNNRSTGGSWNFGP--QDSNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWS 496
Query: 1208 KAGSPSRKPSGWGTEASWGESSCDKWENVGSPA-AKSFSEWGTEASWGKSFGDKPENVSP 1266
P+ W + G + N +P +S S G+E G+S G + S
Sbjct: 497 GPNQPNSSTGAWDNQK--GHPLPENQGNAQAPCWGRSSSSAGSEVG-GQSTGSNHKAGSS 553
Query: 1267 AAKTSSGWGSEASWGKSSGDRQENVGGSASKP--LS--GWGAKASWGKSSEDKLEEVETT 1322
+ S + Q + + P LS GWG + D +EEV
Sbjct: 554 DSHNSGRRSYRPAHPDCQAVLQTLLSRTDLDPRVLSNTGWGQTQIKQDTVWD-IEEVPRP 612
Query: 1323 VAKPSSAWGTEASWDKSSEVTLEKVA---APAE-NPL-SGWG-----TEAQDSGKSSDWS 1372
K GTE W+ ++ T AP++ N + SGWG TE +D + W+
Sbjct: 613 EGKSDK--GTEG-WESAATQTKNSGGWGDAPSQSNQMKSGWGELSASTEWKDPKSTGGWN 669
Query: 1373 EWKDHANATASWGRNGSEEN--SGWDTKASWKTKALDKLDDVGSAVENSSSVWGARED-F 1429
++K+ N +++WG ++E S W+ ++S K + + + WG D
Sbjct: 670 DYKN--NNSSNWGGGRADEKTPSSWN-ESSCKDQGWGGGRQPNQGWTSGKNGWGEEVDQV 726
Query: 1430 STKGWEDSS-KP-SANEKSIVHQIGGW------NVPDAKGTDDSCWGKQKLTENAKGTDD 1481
WE S+ KP S + +IG W N+ G +D C K+ N G
Sbjct: 727 KNNNWESSANKPVSGWGEGGQSEIGTWGNGGNTNLASKGGWED-C--KRSPAWNETGRQP 783
Query: 1482 SSWGKQKHTENESP---QPASSNAWD--LPDATGGSETEMQVWGQSRKEPFKKN---RGW 1533
+SW KQ + + P QP +S +W P G W + K+ GW
Sbjct: 784 NSWNKQHQQQQQQPPPPQPEASGSWGGPPPPPQGNVRPSNSNWSSGPQPATPKDDEPSGW 843
Query: 1534 ASSSGEWKGKK 1544
S + +K
Sbjct: 844 EEPSPQSISRK 854
Score = 152 (58.6 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 92/403 (22%), Positives = 152/403 (37%)
Query: 1154 WLENKQENA-NWDS-EADCRKSS---EDKWEKLGTSL-EKPSSGWRT-EGAWGKSSDD-K 1205
W + K N+ NW AD + S E + G +P+ GW + + WG+ D K
Sbjct: 668 WNDYKNNNSSNWGGGRADEKTPSSWNESSCKDQGWGGGRQPNQGWTSGKNGWGEEVDQVK 727
Query: 1206 LEKAGSPSRKP-SGWG----TE-ASWGE------SSCDKWENVG-SPAAKSFSEWGTEA- 1251
S + KP SGWG +E +WG +S WE+ SPA ++E G +
Sbjct: 728 NNNWESSANKPVSGWGEGGQSEIGTWGNGGNTNLASKGGWEDCKRSPA---WNETGRQPN 784
Query: 1252 SWGKSFGDKPENVSPAAKTSSG-WGSEASWGKSSGDRQENVGGSASKPLSGWGAKAS-WG 1309
SW K + + P +SG WG + + + S +P + + S W
Sbjct: 785 SWNKQHQQQQQQPPPPQPEASGSWGGPPPPPQGNVRPSNSNWSSGPQPATPKDDEPSGWE 844
Query: 1310 KSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSS 1369
+ S + + + +SAWG S++ + +K + P +GKS+
Sbjct: 845 EPSPQSISR-KMDIDDGTSAWGDPNSYNYKNVNLWDKNSQGGPAPREP-NLPTPMTGKSA 902
Query: 1370 D-WSEWKDHA--NATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAR 1426
WS+ A N T++WG +E + GW A + SA +
Sbjct: 903 SVWSKSTPPAPDNGTSAWGEP-NESSPGWGEMDDAGASATGWGNTPASAPNAMKPNSKSM 961
Query: 1427 EDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGK 1486
+D GW +S P + H W D D W + + +SWG+
Sbjct: 962 QD----GWGESDGPVTGAR---HP--SWEEED----DGGVWNTAGSQGSTSSHNSASWGQ 1008
Query: 1487 QKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKK 1529
+ + ++++W P A S M + Q+ P K
Sbjct: 1009 GGKKQMKCSIKGNNDSWMNPLAKQFSN--MGLLSQTEDNPSSK 1049
Score = 50 (22.7 bits), Expect = 7.9e-08, Sum P(3) = 7.9e-08
Identities = 25/90 (27%), Positives = 40/90 (44%)
Query: 217 RGTAKSSRDVDARFGVSQ-DPNSTTKAWLEKMRTLFIRKG----SGFSSRSVIT--GDAY 269
R T+ R + G S +PNS AW ++ RKG G SS + ++ G A
Sbjct: 255 RSTSGQDR-IGPGSGFSNFNPNSNPSAWPALVQEGTCRKGVLEAEGSSSSAQVSTVGQAS 313
Query: 270 K----RVNEIGVPFEIAQRITFEERVNVHN 295
+ ++ GV F ++ R E+ +HN
Sbjct: 314 REQQSKMENAGVNFVVSGR----EQAQIHN 339
Score = 42 (19.8 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 189 SRSGTPNFESQEV------ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKA 242
S G+ NF Q+ E N + V Q + T + G +Q PNS+T A
Sbjct: 449 STGGSWNFGPQDSNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWSGPNQ-PNSSTGA 507
Query: 243 W 243
W
Sbjct: 508 W 508
Score = 39 (18.8 bits), Expect = 7.9e-08, Sum P(3) = 7.9e-08
Identities = 21/77 (27%), Positives = 27/77 (35%)
Query: 1501 NAWDL-PDATGGSETEM--QVWGQSRKEPFKK------NRGWASS--SG-EWKGKKNRPP 1548
N +D+ P T G T W ++ P K N W G WKG +N P
Sbjct: 1354 NQFDIIPGDTLGGHTGPAGDSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDP 1413
Query: 1549 RSPGVVNDDSTVNAMYT 1565
S V S + T
Sbjct: 1414 ESDPYVTPGSVLGGTAT 1430
>MGI|MGI:2385292 [details] [associations]
symbol:Tnrc6a "trinucleotide repeat containing 6a"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IDA]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0032507
"maintenance of protein location in cell" evidence=ISS] [GO:0032947
"protein complex scaffold" evidence=ISS] [GO:0035068
"micro-ribonucleoprotein complex" evidence=ISO] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISS] InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2385292 GO:GO:0048471 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009267 GO:GO:0032507 GO:GO:0000932
GO:GO:0035068 GO:GO:0035278 GO:GO:0032947 SUPFAM:SSF46934
InterPro:IPR019486 PANTHER:PTHR31070 Pfam:PF10427 CTD:27327
eggNOG:NOG318066 ChiTaRS:TNRC6A EMBL:AK147327 IPI:IPI00670741
RefSeq:NP_659174.3 UniGene:Mm.102305 ProteinModelPortal:Q3UHK8
SMR:Q3UHK8 IntAct:Q3UHK8 STRING:Q3UHK8 PhosphoSite:Q3UHK8
PRIDE:Q3UHK8 GeneID:233833 KEGG:mmu:233833 UCSC:uc009jpb.1
HOGENOM:HOG000049171 InParanoid:Q3UHK8 OrthoDB:EOG4DFPMT
NextBio:381871 Genevestigator:Q3UHK8 Uniprot:Q3UHK8
Length = 1896
Score = 174 (66.3 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 95/395 (24%), Positives = 161/395 (40%)
Query: 1190 SGWRTEGAWGKSSDDKLEKA-GSPS-RKPSGWGTEASWGESSCDKWENVGSPAAKSFSEW 1247
SG + G G+++ D + P P G + + + WE G+ ++S S W
Sbjct: 515 SGDKCAGPNGQANGDTVNATLMQPGINGPMGTNFQVNTNKGG-GVWEP-GTVNSQS-SPW 571
Query: 1248 GTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQEN--VGGSASKPLSGWGAK 1305
G+ + S G + SPA T +G S W K ++ N G+ K +GW +
Sbjct: 572 GS-GNGANSGGSRRGWESPAQNTGTGLSS-VEWNKLPSNQHSNDSANGNGKKLTNGWKS- 628
Query: 1306 ASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDS 1365
+ ED + + +S W +A S+ + E E ++G ++++D
Sbjct: 629 -----TEEDDQGSATSQTNEQNSVWA-KAGGTVESDGSAESTGR-LEEKVTG-ESQSRDR 680
Query: 1366 GKSSDWSEWKDHANAT---------ASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAV 1416
K + + N T + WG+ ++N+ WDT+ S + + K D
Sbjct: 681 RKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGER--KTD------ 732
Query: 1417 ENSSSVWG--AREDFSTKGWEDSSKPSANEKSIVHQIGGWNVP-------DAKGTDDSCW 1467
N + WG A + F++ D + P++N+ S + GW P D+KG++ C
Sbjct: 733 -NGTEAWGSSATQTFNSGACTDKTSPNSNDTS---SVSGWGDPKPTLRWGDSKGSN--CQ 786
Query: 1468 GKQKLTENAKGTDDSS-WG---KQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSR 1523
G + A G S+ WG + K T N+S + S W G + Q W S
Sbjct: 787 GGWEDDSAATGMIKSNQWGGCKEDKSTWNDSQK--SKQGW------GDGQKSSQGWSISA 838
Query: 1524 KEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDS 1558
+ N G +S S W G+ N+ S G +D S
Sbjct: 839 GD----NWGESSRSNHW-GEANKKSSSGGSDSDRS 868
Score = 152 (58.6 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 105/449 (23%), Positives = 171/449 (38%)
Query: 1157 NKQENANWDSEADCRKSSEDKWEKLGTS-LEKPSSGWRTEGAWGKSSDDKLEKAGSPSRK 1215
N N N + KS+E+ + TS + +S W G +S D E G K
Sbjct: 612 NDSANGNGKKLTNGWKSTEEDDQGSATSQTNEQNSVWAKAGGTVES-DGSAESTGRLEEK 670
Query: 1216 PSGWGTEASWGESSCDKWENVGS--------PAAKSFSEWGTEASWGKSFGDKPENVSPA 1267
+G S D+ + S P S S WG + D +
Sbjct: 671 VTG--ESQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGE 728
Query: 1268 AKTSSG---WGSEASWGKSSGDRQENVGGSAS--KPLSGWG-AKAS--WGKSSEDKLE-- 1317
KT +G WGS A+ +SG + +++ +SGWG K + WG S +
Sbjct: 729 RKTDNGTEAWGSSATQTFNSGACTDKTSPNSNDTSSVSGWGDPKPTLRWGDSKGSNCQGG 788
Query: 1318 ---EVETTVAKPSSAWGTEASWDKSSEVTLEKVA---APAENPLSGWGTEAQDS-GKSSD 1370
+ T S+ WG DKS+ +K + GW A D+ G+SS
Sbjct: 789 WEDDSAATGMIKSNQWGG-CKEDKSTWNDSQKSKQGWGDGQKSSQGWSISAGDNWGESSR 847
Query: 1371 WSEWKDHANATASWGRNGSEEN-SGWDTKASWKTKALDKLDDVGSAVENSSSVWG-ARED 1428
+ W + AN +S G + S+ + SGW+ KT + +++ N+SS W + +
Sbjct: 848 SNHWGE-ANKKSSSGGSDSDRSISGWNELG--KTSSFTWGNNINP---NNSSGWDESSKP 901
Query: 1429 FSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQK 1488
S++GW D P N+ S+ GW +K W KQ+ + G ++ K
Sbjct: 902 NSSQGWGDP--PKCNQ-SL-----GWG-DSSKPVSSPDWNKQQDIVGSWGIPPAT-SKPP 951
Query: 1489 HTE---NESPQPASSN---AWDLPDATGGSETEMQV------WGQSRKEPFKKNRGWASS 1536
T P PA W+ P +M++ WG K +K W +
Sbjct: 952 GTGWLGGPIPAPAKEEEPTGWEEPSPES-IRRKMEIDDGTSAWGDPSKYNYKNVNMWNKN 1010
Query: 1537 SGEWKGKKNRPPRSPGVVNDDSTVNAMYT 1565
E G+ ++ + ++ S V++ T
Sbjct: 1011 IPEASGRSDQQAQMHRLLPAASAVSSKET 1039
Score = 51 (23.0 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 1519 WGQSRKEPFKKNRGWASS--SGE-WKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLD 1572
W +++ + W GE WKG N P + V S +N++ T + +D
Sbjct: 1529 WPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINSLSINTVREVD 1585
>POMBASE|SPBC1711.05 [details] [associations]
symbol:SPBC1711.05 "nucleocytoplasmic transport
chaperone Srp40 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003674 "molecular_function" evidence=ND] [GO:0005730
"nucleolus" evidence=ISO;IDA] [GO:0006605 "protein targeting"
evidence=NAS] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISM] InterPro:IPR006594 PROSITE:PS50896 SMART:SM00667
PomBase:SPBC1711.05 Pfam:PF05022 GO:GO:0006605 GO:GO:0005730
EMBL:CU329671 GO:GO:0006913 InterPro:IPR013720 Pfam:PF08513
eggNOG:NOG318801 InterPro:IPR007718 OrthoDB:EOG4M68TB
RefSeq:NP_595878.1 ProteinModelPortal:Q9P785 STRING:Q9P785
PRIDE:Q9P785 EnsemblFungi:SPBC1711.05.1 GeneID:2539687
KEGG:spo:SPBC1711.05 OMA:RKHFSRI NextBio:20800841 Uniprot:Q9P785
Length = 451
Score = 159 (61.0 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 86/366 (23%), Positives = 151/366 (41%)
Query: 1193 RTEGAWGKSSDD--KLEKAGSPSRKP------SGWGTEASWGESSCDKWENVGSPAAKSF 1244
+T+ + KS+DD K+ K G+P K SG G+ + +SS + E+ S
Sbjct: 71 KTKESLEKSNDDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSEDNDSSS 130
Query: 1245 SEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQ----ENVGGSASKPLS 1300
S +E+ D + S + SS GS++S SS + + +N S+S
Sbjct: 131 SSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSE 190
Query: 1301 GWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGT 1360
+ SS E E++ S+ + +S +SS + ++ +++
Sbjct: 191 SESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSE 250
Query: 1361 EAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVEN-- 1418
++ S SSD ++ +S + SE++S D+ S + + D S+ ++
Sbjct: 251 DSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDS 310
Query: 1419 -SSSVWG-AREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENA 1476
SSS G + D +T G E S++ S N S + +K D S K + E++
Sbjct: 311 SSSSEDGNSNTDTTTSG-EVSAQSSTNSTSSEESTSVKDEDSSKIHDKSLKRKHEDDESS 369
Query: 1477 KGTDDSSWGKQKHTENESPQ------PA-SSNAWDLPDATGG-SETEMQVW-GQS-RKEP 1526
T S K T P PA N+++ D G + ++ V G+ R+E
Sbjct: 370 TSTKSSRTTKTPFTRVGDPSQWDFASPALRDNSFNFEDDYGTLANRDLIVTRGKGFRQEK 429
Query: 1527 FKKNRG 1532
KK RG
Sbjct: 430 NKKKRG 435
Score = 128 (50.1 bits), Expect = 0.00025, P = 0.00025
Identities = 68/281 (24%), Positives = 116/281 (41%)
Query: 1160 ENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGW 1219
E A+ SEA SS D E +S E SS + + SSD + E + S S
Sbjct: 94 EKAHSSSEASGSGSSSD--ESDSSSSESESSSEDNDSS-SSSSDSESESSSEDSDSSSS- 149
Query: 1220 GTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEAS 1279
+ S ESS + ++ S ++ S SE +E + S E+ S + + S S S
Sbjct: 150 -SSDSESESSSEGSDS-SSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDS 207
Query: 1280 WGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKS 1339
+SS + ++ S+S SS D E + + SS+ S S
Sbjct: 208 ESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSS 267
Query: 1340 SEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEE-NSGWDTK 1398
+ ++ +E+ S ++++ S D +++ +S + SE+ NS DT
Sbjct: 268 KDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSS---SSSEDGNSNTDTT 324
Query: 1399 ASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSK 1439
S + A + S E S+SV +++ S+K + S K
Sbjct: 325 TSGEVSAQSSTNSTSS--EESTSV---KDEDSSKIHDKSLK 360
Score = 124 (48.7 bits), Expect = 0.00068, P = 0.00068
Identities = 75/340 (22%), Positives = 141/340 (41%)
Query: 1332 TEASWDKSSEVT--LEKVAAPAE-----NPLSGWGTEAQDSGKSSDWSEWKDHANATASW 1384
T+ S +KS++ + + K AP E + SG G+ + +S SS SE N ++S
Sbjct: 72 TKESLEKSNDDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSS 131
Query: 1385 GRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANE 1444
+ E+S D+ +S + + D + S +SSS + E S+ DSS S++
Sbjct: 132 SSDSESESSSEDSDSS--SSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDS 189
Query: 1445 KSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWD 1504
+S + + + + DS + +++G+D SS +E+ S SS++
Sbjct: 190 ES---ESSSEDSDSSSSSSDS-----ESESSSEGSDSSSSSSSSESESSSEDNDSSSSSS 241
Query: 1505 LPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDSTVNAMY 1564
++ SE S E ++ SSS + + S ++ S+ ++
Sbjct: 242 DSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDS 301
Query: 1565 TVTRQRLDMFTSEEQDILSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHP 1624
T + D +S E D S+ + + QS N S+++ + + D +
Sbjct: 302 TSSSSDSDSSSSSE-DGNSNTDTTTSG--EVSAQSSTNS---TSSEESTSVKDEDSSKIH 355
Query: 1625 DKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQDFS 1664
DK++K D S + ++ F D SQ DF+
Sbjct: 356 DKSLKRKHEDDESSTSTKSS-RTTKTPFTRVGDPSQWDFA 394
>DICTYBASE|DDB_G0289901 [details] [associations]
symbol:DDB_G0289901 "unknown" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
dictyBase:DDB_G0289901 GO:GO:0016021 EMBL:AAFI02000149
RefSeq:XP_635961.1 ProteinModelPortal:Q54GV8
EnsemblProtists:DDB0302663 GeneID:8627376 KEGG:ddi:DDB_G0289901
eggNOG:NOG309517 OMA:SGWMTAS Uniprot:Q54GV8
Length = 1143
Score = 177 (67.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 99/441 (22%), Positives = 148/441 (33%)
Query: 1124 LEDEFDWSLSPEH-NL---CSDKPVFEDLVED----QSWLENKQENANWDSEADCRKSSE 1175
++ FD+S P+H N+ C D +F+ + S + +W S +S
Sbjct: 134 IQFSFDFSSHPKHANIYYSCIDVWLFDSAYYNYCPTNSGGGSGNSGGSWSSGGS--GNSG 191
Query: 1176 DKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAG---SPSRKPSGW----GTEASWGES 1228
W G+ W + + G S+ D +G S S W G+ +S G
Sbjct: 192 GGWSSGGSG--NSGGSWSSGNSGGHSTGDCPTSSGGWTSGSHSSGSWSSGGGSGSSSGGQ 249
Query: 1229 SCDKWENVG--SPAAKSFSEW----GTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGK 1282
S W + G S S W G+ A G S G + +SSG S SW
Sbjct: 250 SSGSWSSGGGSSSGGHSSGSWSSGGGSSAGGGSSSGSHSSGSWSSGGSSSGGQSSGSWSS 309
Query: 1283 SSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEV 1342
G GG +S S G +S SS ++ + S +W + S S
Sbjct: 310 GGGSSS---GGQSSGSWSSGGGSSSGSHSSGSWSSGGSSSGSHSSGSWSSGGSSSSSGNS 366
Query: 1343 TLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHA--NATASWGRN-GSEE--NSGWDT 1397
+ +G T G+SS S W + N + G N G + NSGW T
Sbjct: 367 GWMTASGGNTGGNTGGNTGGNTGGQSSGNSGWMTASGGNTGGNTGGNTGGQSSGNSGWMT 426
Query: 1398 KASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVP 1457
+ T + G SS G+ GW SS ++ S GW
Sbjct: 427 ASGGNTGG-----NTGGNTGGQSS--GSSSSGGNSGWLTSSGSNSGSSSSGSN-SGWLTS 478
Query: 1458 DAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQ 1517
S G ++ G + G N +S ++ G S +
Sbjct: 479 SGNSVSSSSGGNSGWLTSSGGNSGGNSGSSSSGGNSGWLTSSGG-----NSGGSSSSGSN 533
Query: 1518 VWGQSRKEPFKKNRGWASSSG 1538
S + N GW +SSG
Sbjct: 534 SGASSSGDNTGGNSGWLTSSG 554
Score = 149 (57.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 76/338 (22%), Positives = 121/338 (35%)
Query: 1235 NVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGG- 1293
N G + S W + S G S G S + W S S G S+GD + GG
Sbjct: 170 NSGGGSGNSGGSWSSGGS-GNSGGGWSSGGS--GNSGGSWSSGNSGGHSTGDCPTSSGGW 226
Query: 1294 -SASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAE 1352
S S W + G SS + ++ SS + SW + ++
Sbjct: 227 TSGSHSSGSWSSGGGSGSSSGGQSSGSWSSGGGSSSGGHSSGSWSSGGGSSAGGGSSSGS 286
Query: 1353 NPLSGWGTEAQDSG--KSSDWSEWKDHAN---ATASWGRNGSEENSGWDTKASWKTKALD 1407
+ W + SG S WS ++ ++ SW G +SG + SW +
Sbjct: 287 HSSGSWSSGGSSSGGQSSGSWSSGGGSSSGGQSSGSWSSGGGS-SSGSHSSGSWSSGGSS 345
Query: 1408 KLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCW 1467
GS S S G+ GW +S + + GG N + + +S W
Sbjct: 346 S----GSHSSGSWSSGGSSSSSGNSGWMTASGGNTGGNT-GGNTGG-NT-GGQSSGNSGW 398
Query: 1468 GKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDA--TGGSETEMQVWGQSRKE 1525
+T + T ++ G N Q + ++ W TGG+ T GQS
Sbjct: 399 ----MTASGGNTGGNTGG------NTGGQSSGNSGWMTASGGNTGGN-TGGNTGGQSSGS 447
Query: 1526 PFKK-NRGWASSSGEWKGKKNRPPRSPGVVNDDSTVNA 1562
N GW +SSG G + S + + ++V++
Sbjct: 448 SSSGGNSGWLTSSGSNSGSSSSGSNSGWLTSSGNSVSS 485
Score = 149 (57.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 89/396 (22%), Positives = 141/396 (35%)
Query: 1154 WLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPS 1213
W + +W S SS + +S SSG + G+W S
Sbjct: 226 WTSGSHSSGSWSSGGGSGSSSGGQSSGSWSSGGGSSSGGHSSGSWSSGGGSSAGGGSSSG 285
Query: 1214 RKPSG-W--GTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKT 1270
SG W G +S G+SS W + G ++ S + G S G + +
Sbjct: 286 SHSSGSWSSGGSSSGGQSS-GSWSSGGGSSSGGQSSGSWSSGGGSSSGSHSSGSWSSGGS 344
Query: 1271 SSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSA- 1329
SSG S SW SSG G S+S SGW AS G + + SS
Sbjct: 345 SSGSHSSGSW--SSG------GSSSSSGNSGW-MTASGGNTGGNTGGNTGGNTGGQSSGN 395
Query: 1330 --WGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQ-DSGKSSDWSEWKDHANATASWGR 1386
W T + + + N SGW T + ++G ++ + + +++S G
Sbjct: 396 SGWMTASGGNTGGNTGGNTGGQSSGN--SGWMTASGGNTGGNTGGNTGGQSSGSSSSGGN 453
Query: 1387 NGSEENSGWDTKASWKTKALDKLDDVGSAVENSS---SVWGAREDFSTKGWEDSSKPSAN 1443
+G +SG ++ +S L G++V +SS S W ++ G SS N
Sbjct: 454 SGWLTSSGSNSGSSSSGSNSGWLTSSGNSVSSSSGGNSGWLTSSGGNSGGNSGSSSSGGN 513
Query: 1444 EKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAW 1503
+ G + G++ G +N G +S W N ++
Sbjct: 514 SGWLTSSGGNSGGSSSSGSNS---GASSSGDNTGG--NSGW-LTSSGGNTGGNSGAATGG 567
Query: 1504 DLPDATGGSETEMQVWGQSRKEPFKK-NRGWASSSG 1538
+ +G S + G S N GW +SSG
Sbjct: 568 NSGGNSGASSSGGNSGGASSSGGNTGGNSGWLTSSG 603
Score = 147 (56.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 83/360 (23%), Positives = 119/360 (33%)
Query: 1210 GSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVS--PA 1267
G W + S G S W + GS S W + S G S GD P + +
Sbjct: 173 GGSGNSGGSWSSGGS-GNSG-GGWSSGGS--GNSGGSWSSGNSGGHSTGDCPTSSGGWTS 228
Query: 1268 AKTSSG-WGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKP 1326
SSG W S G SSG + S SG + SW ++ +
Sbjct: 229 GSHSSGSWSSGGGSGSSSGGQSSGSWSSGGGSSSGGHSSGSWSSGGGSSAGGGSSSGSHS 288
Query: 1327 SSAW--GTEASWDKSSEVTLEKVAAPAENPLSG-W---GTEAQDSGKSSDWSEW--KDHA 1378
S +W G +S +SS + + SG W G + S S WS +
Sbjct: 289 SGSWSSGGSSSGGQSSGSWSSGGGSSSGGQSSGSWSSGGGSSSGSHSSGSWSSGGSSSGS 348
Query: 1379 NATASWGRNGSEE---NSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWE 1435
+++ SW GS NSGW T + T + + G SS G + G
Sbjct: 349 HSSGSWSSGGSSSSSGNSGWMTASGGNTGG-NTGGNTGGNTGGQSS--GNSGWMTASGGN 405
Query: 1436 DSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGK---QKLTENAKGTDDSSWGKQKHTEN 1492
N GW T + G Q ++ G +S W + +
Sbjct: 406 TGGNTGGNTGGQSSGNSGWMTASGGNTGGNTGGNTGGQSSGSSSSG-GNSGWLTSSGSNS 464
Query: 1493 ESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPG 1552
S S++ W L + G+ G N GW +SSG G + S G
Sbjct: 465 GSSSSGSNSGW-L--TSSGNSVSSSSGG---------NSGWLTSSGGNSGGNSGSSSSGG 512
Score = 41 (19.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 1690 RRPRSGGNREPSLPPVP 1706
R PR+ +R P++ P P
Sbjct: 1089 RNPRNPTSRAPTVTPTP 1105
>ZFIN|ZDB-GENE-081022-126 [details] [associations]
symbol:zgc:194578 "zgc:194578" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF01417 ZFIN:ZDB-GENE-081022-126
Gene3D:1.25.40.90 InterPro:IPR008942 InterPro:IPR013809
SMART:SM00273 SUPFAM:SSF48464 PROSITE:PS50942 InterPro:IPR001026
GeneTree:ENSGT00550000074611 EMBL:CU464201 IPI:IPI00997314
Ensembl:ENSDART00000127964 ArrayExpress:E7FC75 Bgee:E7FC75
Uniprot:E7FC75
Length = 639
Score = 160 (61.4 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 86/300 (28%), Positives = 118/300 (39%)
Query: 1150 EDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKA 1209
E+Q LE +++ A + A + D WEK T+ +P SG WG S+ E A
Sbjct: 199 EEQKRLEAERKEA--ERRAKEGDTEPDLWEKGATA--QPPSG---SDPWGAPSEPSNESA 251
Query: 1210 -----GSPS--RKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKS-FGDKP 1261
G+PS K S GT WG S+ + A S WG A S + P
Sbjct: 252 TNDPWGAPSGEAKKSSPGTNDPWGGSA----DGTNGSAPPSNDPWGESADNDSSPVSNDP 307
Query: 1262 ENVSPAAKTSSGWGSEASWGKSSGDRQENV-------GGSASKPLSGWGAKAS-WGKSSE 1313
S A+ SS + WG S+G +E G SA P G A WG SE
Sbjct: 308 WGESTNAEKSSPPAAGDPWGDSAGVPEEKAPVKNDPWGASAESPKDSDGKTADPWGAPSE 367
Query: 1314 DKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKV--AAPAENPLSGWGTEAQDSGKSSD- 1370
V+ + S WG ++S T + A+ A+N WGT A ++D
Sbjct: 368 S----VKDSAPAASDPWGAPL---EASSATSDPFGDASKADN--DPWGTAASSPPTANDP 418
Query: 1371 WSEWKDHANATAS---WGRNG-------SEENSGWDTKASWKTKALDKLDDVGSAVENSS 1420
W A+A + +G G S EN TK + +TK L D S V+ S
Sbjct: 419 WGAPSAPADAMTNNDPFGDGGKSDPWGVSSENGNNATKPAEETKKSSFLGDGASLVDLDS 478
>MGI|MGI:2443730 [details] [associations]
symbol:Tnrc6b "trinucleotide repeat containing 6b"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0031047 "gene
silencing by RNA" evidence=IEA] InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 PROSITE:PS50102
MGI:MGI:2443730 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0031047 GO:GO:0000932 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 HOGENOM:HOG000049171 CTD:23112 eggNOG:NOG260411
OMA:NETGRQP ChiTaRS:TNRC6B EMBL:AC125540 EMBL:AC126682
EMBL:AK051922 EMBL:AK122440 IPI:IPI00226311 IPI:IPI00454102
RefSeq:NP_659061.2 UniGene:Mm.131328 UniGene:Mm.412092
ProteinModelPortal:Q8BKI2 SMR:Q8BKI2 DIP:DIP-48568N STRING:Q8BKI2
PhosphoSite:Q8BKI2 PaxDb:Q8BKI2 PRIDE:Q8BKI2
Ensembl:ENSMUST00000067689 GeneID:213988 KEGG:mmu:213988
UCSC:uc007wvt.1 UCSC:uc007wvu.2 InParanoid:Q80TK4 OrthoDB:EOG4G4GQJ
NextBio:374148 Bgee:Q8BKI2 Genevestigator:Q8BKI2 Uniprot:Q8BKI2
Length = 1810
Score = 182 (69.1 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 110/456 (24%), Positives = 169/456 (37%)
Query: 1131 SLSPEHNLCSDKPVFEDLVEDQSWLENKQENANWDS---EADCRKSSEDKWEKLGTSLEK 1187
S P H C + V + L+ N W + D E+ G S +K
Sbjct: 629 SYRPTHPDC--QAVLQTLLSRTDLDPRVLSNTGWGQTQIKQDTVWDIEEVPRPEGKS-DK 685
Query: 1188 PSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGT-EAS--WGE-SSCDKWENVGSPAAKS 1243
+ GW + K+S + ++ SGWG AS W + S W + + +
Sbjct: 686 GTEGWESAATQTKNSGGWGDAPSQSNQMKSGWGELSASTEWKDPKSTGGWNDYKN---NN 742
Query: 1244 FSEWG-------TEASWGKSFGDKPENVSPAAKTSSGWGS-EASWGKSSGD-RQENVGGS 1294
S WG T +SW +S K + + + GW S + WG+ + N S
Sbjct: 743 SSNWGGGRADEKTPSSWNES-SCKDQGWGGGRQPNQGWTSGKNGWGEEVDQVKNNNWESS 801
Query: 1295 ASKPLSGWGAKA-----SWGKSSEDKL-EEVETTVAKPSSAW---GTEA-SWDKSSEVTL 1344
A+KP+SGWG +WG L + K S AW G + SW+K +
Sbjct: 802 ANKPVSGWGEGGQNEIGTWGNGGNTNLASKGGWEDCKRSPAWNETGRQPNSWNKQHQQ-- 859
Query: 1345 EKVAAPAENPLSG-WG---TEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKAS 1400
++ P + SG WG Q + + S+ S W T +E SGW+ +
Sbjct: 860 QQQPPPPQPEASGSWGGPPPPPQGNVRPSN-SNWSSGPQPTTP----KDDEPSGWEEPSP 914
Query: 1401 WKTKALDKLDDVGSAVENSSSVWGAREDFSTKG---WEDSSK--PSANEKSIVHQIGGWN 1455
K+D +++ +S WG ++ K W+ +S+ P+ E N
Sbjct: 915 QSISR--KMD-----IDDGTSAWGDPNSYNYKNVNLWDKNSQGGPAPREP---------N 958
Query: 1456 VPDAK-GTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSET 1514
+P G S W K T A S+WG+ NES S W D G S T
Sbjct: 959 LPTPMTGKSASVWSKS--TPPAPDNGTSAWGEP----NES-----SPGWGEMDDAGASTT 1007
Query: 1515 ---EMQVWGQSRKEPFKKNR--GWASSSGEWKGKKN 1545
+ +P K+ GW S G G ++
Sbjct: 1008 GWGNTPANAPNAMKPNSKSMQDGWGESDGPVTGARH 1043
Score = 167 (63.8 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 96/430 (22%), Positives = 162/430 (37%)
Query: 1150 EDQSW-LENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSG-WRTEGAWGKSSDDKLE 1207
+ SW N+ +W+ + ++++KW + S G W+ + +
Sbjct: 506 KSDSWDNNNRSTGGSWNFGP--QDNNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWS 563
Query: 1208 KAGSPSRKPSGWGTEASWGESSCDKWENVGSPA-AKSFSEWGTEASWGKSFGDKPENVSP 1266
P+ W + G + N +P +S S G+E G+S G + S
Sbjct: 564 GPNQPNSSTGAWDNQK--GHPLPENQGNAQAPCWGRSSSSAGSEVG-GQSTGSNHKAGSS 620
Query: 1267 AAKTSSGWGSEASWGKSSGDRQENVGGSASKP--LS--GWGAKASWGKSSEDKLEEVETT 1322
+ S + Q + + P LS GWG + D +EEV
Sbjct: 621 DSHNSGRRSYRPTHPDCQAVLQTLLSRTDLDPRVLSNTGWGQTQIKQDTVWD-IEEVPRP 679
Query: 1323 VAKPSSAWGTEASWDKSSEVTLEKVA---APAE-NPL-SGWG-----TEAQDSGKSSDWS 1372
K GTE W+ ++ T AP++ N + SGWG TE +D + W+
Sbjct: 680 EGKSDK--GTEG-WESAATQTKNSGGWGDAPSQSNQMKSGWGELSASTEWKDPKSTGGWN 736
Query: 1373 EWKDHANATASWGRNGSEEN--SGWDTKASWKTKALDKLDDVGSAVENSSSVWGARED-F 1429
++K+ N +++WG ++E S W+ ++S K + + + WG D
Sbjct: 737 DYKN--NNSSNWGGGRADEKTPSSWN-ESSCKDQGWGGGRQPNQGWTSGKNGWGEEVDQV 793
Query: 1430 STKGWEDSS-KP-SANEKSIVHQIGGW------NVPDAKGTDDSCWGKQKLTENAKGTDD 1481
WE S+ KP S + ++IG W N+ G +D C K+ N G
Sbjct: 794 KNNNWESSANKPVSGWGEGGQNEIGTWGNGGNTNLASKGGWED-C--KRSPAWNETGRQP 850
Query: 1482 SSWGKQKHTENESP--QPASSNAWD--LPDATGGSETEMQVWGQSRKEPFKKN---RGWA 1534
+SW KQ + + P QP +S +W P G W + K+ GW
Sbjct: 851 NSWNKQHQQQQQPPPPQPEASGSWGGPPPPPQGNVRPSNSNWSSGPQPTTPKDDEPSGWE 910
Query: 1535 SSSGEWKGKK 1544
S + +K
Sbjct: 911 EPSPQSISRK 920
Score = 156 (60.0 bits), Expect = 9.8e-05, Sum P(3) = 9.8e-05
Identities = 84/363 (23%), Positives = 140/363 (38%)
Query: 1146 EDLVEDQSWLENKQENANWDS-------EADCRKSSEDKWEKLGTSLEKPSSGWRTEGAW 1198
E +DQ W +Q N W S E D K++ WE +S KP SGW
Sbjct: 761 ESSCKDQGWGGGRQPNQGWTSGKNGWGEEVDQVKNNN--WE---SSANKPVSGW------ 809
Query: 1199 GKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVG-SPAAKSFSEWGTEA-SWGKS 1256
G+ +++ G+ WG + +S WE+ SPA ++E G + SW K
Sbjct: 810 GEGGQNEI---GT-------WGNGGNTNLASKGGWEDCKRSPA---WNETGRQPNSWNKQ 856
Query: 1257 FGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKAS-WGKSSEDK 1315
+ + P + S WG + + + S +P + + S W + S
Sbjct: 857 HQQQQQPPPPQPEASGSWGGPPPPPQGNVRPSNSNWSSGPQPTTPKDDEPSGWEEPSPQS 916
Query: 1316 LEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSD-WSEW 1374
+ + + +SAWG S++ + +K + P +GKS+ WS+
Sbjct: 917 ISR-KMDIDDGTSAWGDPNSYNYKNVNLWDKNSQGGPAPREP-NLPTPMTGKSASVWSKS 974
Query: 1375 KDHA--NATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTK 1432
A N T++WG +E + GW A G+ N+ +
Sbjct: 975 TPPAPDNGTSAWGEP-NESSPGWGEMDD----AGASTTGWGNTPANAPNAMKPNSKSMQD 1029
Query: 1433 GWEDSSKP--SANEKSIVHQIGG--WNVPDAKGTDDS----CWG---KQKLTENAKGTDD 1481
GW +S P A S + G WN ++G+ S WG K+++ + KG ++
Sbjct: 1030 GWGESDGPVTGARHPSWEEEDDGGVWNTAGSQGSTSSHNSASWGQGGKKQMKCSLKGGNN 1089
Query: 1482 SSW 1484
SW
Sbjct: 1090 DSW 1092
Score = 51 (23.0 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 27/90 (30%), Positives = 39/90 (43%)
Query: 217 RGTAKSSRDVDARFGVSQ-DPNSTTKAWLEKMRTLFIRKG-----SGFSSRSVIT-GDAY 269
R T+ R + G S +PNS AW ++ RKG S SS V T G A
Sbjct: 322 RSTSGQDR-IGPGSGFSNFNPNSNPSAWPALVQEGTSRKGALETESSSSSAQVSTVGQAS 380
Query: 270 K----RVNEIGVPFEIAQRITFEERVNVHN 295
+ ++ GV F ++ R E+ +HN
Sbjct: 381 REQQSKMENAGVNFVVSGR----EQAQIHN 406
Score = 42 (19.8 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 195 NFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAW 243
N +++ E N + V Q + T + G +Q PNS+T AW
Sbjct: 528 NNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWSGPNQ-PNSSTGAW 575
Score = 39 (18.8 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 21/77 (27%), Positives = 27/77 (35%)
Query: 1501 NAWDL-PDATGGSETEM--QVWGQSRKEPFKK------NRGWASS--SG-EWKGKKNRPP 1548
N +D+ P T G T W ++ P K N W G WKG +N P
Sbjct: 1412 NQFDIIPGDTLGGHTGPAGDSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDP 1471
Query: 1549 RSPGVVNDDSTVNAMYT 1565
S V S + T
Sbjct: 1472 ESDPYVTPGSVLGGTTT 1488
>WB|WBGene00002263 [details] [associations]
symbol:lea-1 species:6239 "Caenorhabditis elegans"
[GO:0006950 "response to stress" evidence=TAS] Pfam:PF02987
GO:GO:0006950 GeneTree:ENSGT00550000074777 EMBL:Z73975 EMBL:Z83113
UniGene:Cel.2419 GeneID:3564838 KEGG:cel:CELE_K08H10.1 CTD:3564838
InterPro:IPR004238 RefSeq:NP_001256160.1 EnsemblMetazoa:K08H10.1k
WormBase:K08H10.1k OMA:DDTRRET Uniprot:H2FLL1
Length = 1397
Score = 181 (68.8 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 96/412 (23%), Positives = 166/412 (40%)
Query: 1155 LENKQENANWDSEADCRKSSEDKW-EKLGTSLEKPSSGW-RTEGAWGKSSDDKLEKAGSP 1212
+ENK +A +++ D + DK +K G + +K W T+ G + D +KAG
Sbjct: 380 VENKAADA-YNTAKDKASDAWDKTKDKAGEAKDKMGDAWDTTKDKAGDAWDTTKDKAGDG 438
Query: 1213 SRKPS-GWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTS 1271
K W T + + D W+ A ++ + G EA W D ++ + AK
Sbjct: 439 KGKAGDAWDTTK---DKASDAWDTTKDKAGEAKDKMG-EA-W-----DHTKDKAGEAKDK 488
Query: 1272 SGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKP-SSAW 1330
+ ++ + GKS E +G S S W + S++DK E V S A+
Sbjct: 489 ASDAADDAQGKSKS-MTEKIGDSIS---GAWESTKDTAVSAKDKTAEAAGKVGDSISGAY 544
Query: 1331 GTEASWDKSSEV--TLEKVAAPAENPLSGWGTEAQDSGK--SSD-WSEWKDHAN-----A 1380
T +K+S++ + + + +++ + +A +S K +SD W + KD A A
Sbjct: 545 DTVK--EKASDIADSFKAHSTDSKDNVENKAADAYNSAKDKASDAWDKTKDKAGDAKDKA 602
Query: 1381 TASWGRNGSEENSGWDTKASWKTKALDKLDDV-GSAVENSSSVWGAREDFSTKGWEDSSK 1439
+W + WD+ A DK D G A + S S+ D + G DS K
Sbjct: 603 ADAWDTTKDKAGDAWDSTKDHAADAKDKASDAAGDAKDKSKSLTEKAGD-AISGAYDSVK 661
Query: 1440 PSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPAS 1499
A++ + + N D ++ +AK +W K K E+ A
Sbjct: 662 EKASDIADSFKAHSTNSKD--NVENKA---SDAYNSAKDKASDAWDKTKDKAGEAKDKAG 716
Query: 1500 SNAWD-LPDATGGS-----ETEMQVWGQSRKEPF--KKNRGWASSSGEWKGK 1543
+AWD D G + + W ++ + K++ G A+ S + K K
Sbjct: 717 -DAWDNTKDKAGNAWDSTKDKASDAWDTTKDKASDAKESAGDAADSAKDKSK 767
Score = 37 (18.1 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 947 ASDSYLDKLSGVLANMIYPV 966
++D LD+LS L + + PV
Sbjct: 20 SADHLLDELSKKLVDEVIPV 39
>UNIPROTKB|F1M3I2 [details] [associations]
symbol:RGD1562799 "Protein RGD1562799" species:10116
"Rattus norvegicus" [GO:0005200 "structural constituent of
cytoskeleton" evidence=IEA] InterPro:IPR026189 GO:GO:0005200
PANTHER:PTHR16742 IPI:IPI00951076 Ensembl:ENSRNOT00000066112
Uniprot:F1M3I2
Length = 554
Score = 156 (60.0 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 86/341 (25%), Positives = 141/341 (41%)
Query: 1150 EDQSWLENKQENANWDSEADCRKSSEDKWE-KLGTSLEKPSSGWRTEGAW--GKSSDDKL 1206
E ++ K+EN + S +DK + G+ K + G+ G D K
Sbjct: 140 EKKALKTEKEENLKPVDTKISKDSQKDKGKISSGSEGTKGTDSASETGSDKPGVKKDIKT 199
Query: 1207 EKAGSPSR-KPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVS 1265
K G+ S G E + G+ K G A S SE G+E + GK +
Sbjct: 200 SKKGTKGTDSASESGNEKASGKKEA-KTSKKGPKAKDSASETGSEKAGGKKEAKSSKKGL 258
Query: 1266 PAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAK 1325
A +++S GSE + GK + G A + S G++ + GK K + +
Sbjct: 259 KAKESASDSGSEKAGGKKEA-KSSKKGLKAKESASDSGSEKAGGKKGV-KGSKKGLKAKE 316
Query: 1326 PSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWG 1385
+S G+E + K V K + A++ S G+E K + S+ ++AS
Sbjct: 317 SASDSGSEKAGGKKG-VKGSKKGSKAKDSASETGSEKAGGKKDAKASKKVSKDKSSAS-- 373
Query: 1386 RNGSEENSGW-DTKASWKTKALDKLDDVGSAVENSSSVWGAREDF--STKGWEDSSKPSA 1442
+G E+ G + KAS K + K D SA E+ G +++ S K +D + PS
Sbjct: 374 ESGGEKAGGKKEAKAS---KKVSK--DKSSASESGGEKAGGKKEAKASKKVSKDKASPSE 428
Query: 1443 NEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSS 1483
+E V + GG AK + GK++ + KG+ D +
Sbjct: 429 SE---VAKAGGKKEAKAKSDGEKSGGKKEARASKKGSKDKA 466
Score = 155 (59.6 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 88/363 (24%), Positives = 145/363 (39%)
Query: 1140 SDKP-VFEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAW 1198
SDKP V +D+ + + + +E K E K K G + +S +E A
Sbjct: 188 SDKPGVKKDIKTSKKGTKGTDSASESGNEKASGKK-EAKTSKKGPKAKDSASETGSEKAG 246
Query: 1199 GKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFG 1258
GK +K S G+E + G+ K G A +S S+ G+E + GK G
Sbjct: 247 GKKEAKSSKKGLKAKESASDSGSEKAGGKKEA-KSSKKGLKAKESASDSGSEKAGGKK-G 304
Query: 1259 DKPENVSPAAKTS-SGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLE 1317
K AK S S GSE + GK G + G A S G++ + GK +
Sbjct: 305 VKGSKKGLKAKESASDSGSEKAGGKK-GVKGSKKGSKAKDSASETGSEKAGGKKDAKASK 363
Query: 1318 EVETTVAKPSSAWGTEASWDK----SSEVTLEKVAAPAEN-PLSGWGTEAQDSGK-SSDW 1371
+V + S + G +A K S +V+ +K +A +G EA+ S K S D
Sbjct: 364 KVSKDKSSASESGGEKAGGKKEAKASKKVSKDKSSASESGGEKAGGKKEAKASKKVSKDK 423
Query: 1372 SEWKDHANATASWGRNGSEENSGWDTKASWKTKALDK-LDDVGSAVENSSS-VWGAREDF 1429
+ + A A + ++ G + + +A K D SA E+ G +E
Sbjct: 424 ASPSESEVAKAGGKKEAKAKSDGEKSGGKKEARASKKGSKDKASASESGGEKAGGKKEAK 483
Query: 1430 STKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKH 1489
+ K SK + K++ +G + K GK + ++A D+ GK+
Sbjct: 484 ADKKSPKQSKETLVSKAVDKDVGK---KEEKSVKQGSKGKDVVADSASEKGDA--GKEAK 538
Query: 1490 TEN 1492
+++
Sbjct: 539 SKS 541
>UNIPROTKB|F1M6G5 [details] [associations]
symbol:Tnrc6a "Protein Tnrc6a" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] InterPro:IPR000504
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804
SMART:SM00360 RGD:1307268 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0031047 SUPFAM:SSF46934 InterPro:IPR019486
PANTHER:PTHR31070 Pfam:PF10427 IPI:IPI00951623
Ensembl:ENSRNOT00000065634 ArrayExpress:F1M6G5 Uniprot:F1M6G5
Length = 1881
Score = 168 (64.2 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 92/393 (23%), Positives = 157/393 (39%)
Query: 1190 SGWRTEGAWGKSSDDKLEKA-GSPS-RKPSGWGTEASWGESSCDKWENVGSPAAKSFSEW 1247
SG + G G+++ D + P P G + S + WE G+ ++S S W
Sbjct: 498 SGDKCAGPNGQANGDTVNATLMQPGINGPMGTNFQVSTNKGG-GVWEP-GTVNSQS-SPW 554
Query: 1248 GTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQEN--VGGSASKPLSGWGAK 1305
G+ + S G + SPA T + S W K ++ N G+ SK L+
Sbjct: 555 GS-GNGANSGGSRRGWGSPAQNTGTSLSS-VEWNKLPSNQHSNDSANGNGSKKLTN---- 608
Query: 1306 ASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDS 1365
W + ED + + +S W +A S+ + E E ++G ++++D
Sbjct: 609 -GWKSTEEDDQGSGTSQTNEQNSVWA-KAGGTVESDGSAESTGR-LEEKVTG-ESQSRDR 664
Query: 1366 GKSSDWSEWKDHANAT---------ASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAV 1416
K + + N T + WG+ ++N+ WDT+ S + + K D
Sbjct: 665 RKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGER--KTD------ 716
Query: 1417 ENSSSVWG--AREDFSTKGWEDSSKPSANEKSIVHQIGGWNVP-------DAKGTDDSCW 1467
N + WG A + F++ D + P++N+ S + GW P D+KG++ C
Sbjct: 717 -NGTEAWGSSATQTFNSGACTDKTSPNSNDTS---SVSGWGDPKPTLRWGDSKGSN--CQ 770
Query: 1468 GKQKLTENAKGTDDSS-WGKQKHTENE-SPQPASSNAWDLPDATGGSETEMQVWGQSRKE 1525
G + A G S+ WG K ++ + + W G + Q W S +
Sbjct: 771 GGWEDDSAATGMIKSNQWGHCKEDKSAWNDSQKNKQGW------GDGQKSSQGWSVSASD 824
Query: 1526 PFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDS 1558
N G +S S W G+ N+ S G +D S
Sbjct: 825 ----NWGESSRSNHW-GEANKKSSSGGSDSDRS 852
Score = 152 (58.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 99/419 (23%), Positives = 156/419 (37%)
Query: 1157 NKQENANWDSE-ADCRKSSEDKWEKLGTS-LEKPSSGWRTEGAWGKSSDDKLEKAGSPSR 1214
N N N + + KS+E+ + GTS + +S W G +S D E G
Sbjct: 595 NDSANGNGSKKLTNGWKSTEEDDQGSGTSQTNEQNSVWAKAGGTVES-DGSAESTGRLEE 653
Query: 1215 KPSGWGTEASWGESSCDKWENVGS--------PAAKSFSEWGTEASWGKSFGDKPENVSP 1266
K +G S D+ + S P S S WG + D +
Sbjct: 654 KVTG--ESQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRG 711
Query: 1267 AAKTSSG---WGSEASWGKSSGDRQENVGGSAS--KPLSGWG-AKAS--WGKSSEDKLE- 1317
KT +G WGS A+ +SG + +++ +SGWG K + WG S +
Sbjct: 712 ERKTDNGTEAWGSSATQTFNSGACTDKTSPNSNDTSSVSGWGDPKPTLRWGDSKGSNCQG 771
Query: 1318 ----EVETTVAKPSSAWGTEASWDKSSEVTLEKVA---APAENPLSGWGTEAQDS-GKSS 1369
+ T S+ WG DKS+ +K + GW A D+ G+SS
Sbjct: 772 GWEDDSAATGMIKSNQWG-HCKEDKSAWNDSQKNKQGWGDGQKSSQGWSVSASDNWGESS 830
Query: 1370 DWSEWKDHANATASWGRNGSEEN-SGWDTKASWKTKALDKLDDVGSAVENSSSVWGAR-E 1427
+ W + AN +S G + S+ + SGW+ ++G + SS WG
Sbjct: 831 RSNHWGE-ANKKSSSGGSDSDRSISGWN--------------ELG---KTSSFTWGNNIN 872
Query: 1428 DFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQ 1487
++ GW++SSKP++++ GW P K WG +++K W KQ
Sbjct: 873 PNNSSGWDESSKPNSSQ--------GWGDPP-KCNQSLGWG-----DSSKPVSSPDWNKQ 918
Query: 1488 KHTENE-SPQPASSN----AW-DLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEW 1540
+ PA+S W P E E W + E ++ + W
Sbjct: 919 QDIVGSWGIPPATSKPPGTGWLGGPIPAPAKEEEPTGWEEPSPESIRRKMEIDDGTSAW 977
Score = 51 (23.0 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 1519 WGQSRKEPFKKNRGWASS--SGE-WKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLD 1572
W +++ + W GE WKG N P + V S +N++ T + +D
Sbjct: 1513 WPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINSLSINTVREVD 1569
>RGD|1307268 [details] [associations]
symbol:Tnrc6a "trinucleotide repeat containing 6a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0009267 "cellular response to starvation" evidence=ISO]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0035068
"micro-ribonucleoprotein complex" evidence=ISO] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISO] InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 SMART:SM00360 RGD:1307268
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0031047
SUPFAM:SSF46934 GeneTree:ENSGT00410000025966 InterPro:IPR019486
PANTHER:PTHR31070 Pfam:PF10427 IPI:IPI00869768
Ensembl:ENSRNOT00000017885 UCSC:RGD:1307268 ArrayExpress:F1M9Y8
Uniprot:F1M9Y8
Length = 1898
Score = 168 (64.2 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 92/393 (23%), Positives = 157/393 (39%)
Query: 1190 SGWRTEGAWGKSSDDKLEKA-GSPS-RKPSGWGTEASWGESSCDKWENVGSPAAKSFSEW 1247
SG + G G+++ D + P P G + S + WE G+ ++S S W
Sbjct: 515 SGDKCAGPNGQANGDTVNATLMQPGINGPMGTNFQVSTNKGG-GVWEP-GTVNSQS-SPW 571
Query: 1248 GTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQEN--VGGSASKPLSGWGAK 1305
G+ + S G + SPA T + S W K ++ N G+ SK L+
Sbjct: 572 GS-GNGANSGGSRRGWGSPAQNTGTSLSS-VEWNKLPSNQHSNDSANGNGSKKLTN---- 625
Query: 1306 ASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDS 1365
W + ED + + +S W +A S+ + E E ++G ++++D
Sbjct: 626 -GWKSTEEDDQGSGTSQTNEQNSVWA-KAGGTVESDGSAESTGR-LEEKVTG-ESQSRDR 681
Query: 1366 GKSSDWSEWKDHANAT---------ASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAV 1416
K + + N T + WG+ ++N+ WDT+ S + + K D
Sbjct: 682 RKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGER--KTD------ 733
Query: 1417 ENSSSVWG--AREDFSTKGWEDSSKPSANEKSIVHQIGGWNVP-------DAKGTDDSCW 1467
N + WG A + F++ D + P++N+ S + GW P D+KG++ C
Sbjct: 734 -NGTEAWGSSATQTFNSGACTDKTSPNSNDTS---SVSGWGDPKPTLRWGDSKGSN--CQ 787
Query: 1468 GKQKLTENAKGTDDSS-WGKQKHTENE-SPQPASSNAWDLPDATGGSETEMQVWGQSRKE 1525
G + A G S+ WG K ++ + + W G + Q W S +
Sbjct: 788 GGWEDDSAATGMIKSNQWGHCKEDKSAWNDSQKNKQGW------GDGQKSSQGWSVSASD 841
Query: 1526 PFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDS 1558
N G +S S W G+ N+ S G +D S
Sbjct: 842 ----NWGESSRSNHW-GEANKKSSSGGSDSDRS 869
Score = 152 (58.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 99/419 (23%), Positives = 156/419 (37%)
Query: 1157 NKQENANWDSE-ADCRKSSEDKWEKLGTS-LEKPSSGWRTEGAWGKSSDDKLEKAGSPSR 1214
N N N + + KS+E+ + GTS + +S W G +S D E G
Sbjct: 612 NDSANGNGSKKLTNGWKSTEEDDQGSGTSQTNEQNSVWAKAGGTVES-DGSAESTGRLEE 670
Query: 1215 KPSGWGTEASWGESSCDKWENVGS--------PAAKSFSEWGTEASWGKSFGDKPENVSP 1266
K +G S D+ + S P S S WG + D +
Sbjct: 671 KVTG--ESQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRG 728
Query: 1267 AAKTSSG---WGSEASWGKSSGDRQENVGGSAS--KPLSGWG-AKAS--WGKSSEDKLE- 1317
KT +G WGS A+ +SG + +++ +SGWG K + WG S +
Sbjct: 729 ERKTDNGTEAWGSSATQTFNSGACTDKTSPNSNDTSSVSGWGDPKPTLRWGDSKGSNCQG 788
Query: 1318 ----EVETTVAKPSSAWGTEASWDKSSEVTLEKVA---APAENPLSGWGTEAQDS-GKSS 1369
+ T S+ WG DKS+ +K + GW A D+ G+SS
Sbjct: 789 GWEDDSAATGMIKSNQWG-HCKEDKSAWNDSQKNKQGWGDGQKSSQGWSVSASDNWGESS 847
Query: 1370 DWSEWKDHANATASWGRNGSEEN-SGWDTKASWKTKALDKLDDVGSAVENSSSVWGAR-E 1427
+ W + AN +S G + S+ + SGW+ ++G + SS WG
Sbjct: 848 RSNHWGE-ANKKSSSGGSDSDRSISGWN--------------ELG---KTSSFTWGNNIN 889
Query: 1428 DFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQ 1487
++ GW++SSKP++++ GW P K WG +++K W KQ
Sbjct: 890 PNNSSGWDESSKPNSSQ--------GWGDPP-KCNQSLGWG-----DSSKPVSSPDWNKQ 935
Query: 1488 KHTENE-SPQPASSN----AW-DLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEW 1540
+ PA+S W P E E W + E ++ + W
Sbjct: 936 QDIVGSWGIPPATSKPPGTGWLGGPIPAPAKEEEPTGWEEPSPESIRRKMEIDDGTSAW 994
Score = 51 (23.0 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 1519 WGQSRKEPFKKNRGWASS--SGE-WKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLD 1572
W +++ + W GE WKG N P + V S +N++ T + +D
Sbjct: 1530 WPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINSLSINTVREVD 1586
>UNIPROTKB|D4A372 [details] [associations]
symbol:Tnrc6a "Trinucleotide repeat containing 6
(Predicted), isoform CRA_c" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 SMART:SM00360 RGD:1307268
GO:GO:0000166 EMBL:CH473956 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0009267 GO:GO:0000932 GO:GO:0035068 GO:GO:0035278
SUPFAM:SSF46934 InterPro:IPR019486 PANTHER:PTHR31070 Pfam:PF10427
CTD:27327 IPI:IPI00952192 RefSeq:NP_001101019.1 UniGene:Rn.6839
Ensembl:ENSRNOT00000068331 GeneID:308971 KEGG:rno:308971
NextBio:659888 Uniprot:D4A372
Length = 1954
Score = 168 (64.2 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 92/393 (23%), Positives = 157/393 (39%)
Query: 1190 SGWRTEGAWGKSSDDKLEKA-GSPS-RKPSGWGTEASWGESSCDKWENVGSPAAKSFSEW 1247
SG + G G+++ D + P P G + S + WE G+ ++S S W
Sbjct: 505 SGDKCAGPNGQANGDTVNATLMQPGINGPMGTNFQVSTNKGG-GVWEP-GTVNSQS-SPW 561
Query: 1248 GTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQEN--VGGSASKPLSGWGAK 1305
G+ + S G + SPA T + S W K ++ N G+ SK L+
Sbjct: 562 GS-GNGANSGGSRRGWGSPAQNTGTSLSS-VEWNKLPSNQHSNDSANGNGSKKLTN---- 615
Query: 1306 ASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDS 1365
W + ED + + +S W +A S+ + E E ++G ++++D
Sbjct: 616 -GWKSTEEDDQGSGTSQTNEQNSVWA-KAGGTVESDGSAESTGR-LEEKVTG-ESQSRDR 671
Query: 1366 GKSSDWSEWKDHANAT---------ASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAV 1416
K + + N T + WG+ ++N+ WDT+ S + + K D
Sbjct: 672 RKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGER--KTD------ 723
Query: 1417 ENSSSVWG--AREDFSTKGWEDSSKPSANEKSIVHQIGGWNVP-------DAKGTDDSCW 1467
N + WG A + F++ D + P++N+ S + GW P D+KG++ C
Sbjct: 724 -NGTEAWGSSATQTFNSGACTDKTSPNSNDTS---SVSGWGDPKPTLRWGDSKGSN--CQ 777
Query: 1468 GKQKLTENAKGTDDSS-WGKQKHTENE-SPQPASSNAWDLPDATGGSETEMQVWGQSRKE 1525
G + A G S+ WG K ++ + + W G + Q W S +
Sbjct: 778 GGWEDDSAATGMIKSNQWGHCKEDKSAWNDSQKNKQGW------GDGQKSSQGWSVSASD 831
Query: 1526 PFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDS 1558
N G +S S W G+ N+ S G +D S
Sbjct: 832 ----NWGESSRSNHW-GEANKKSSSGGSDSDRS 859
Score = 144 (55.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 97/414 (23%), Positives = 155/414 (37%)
Query: 1157 NKQENANWDSE-ADCRKSSEDKWEKLGTS-LEKPSSGWRTEGAWGKSSDDKLEKAGSPSR 1214
N N N + + KS+E+ + GTS + +S W G +S D E G
Sbjct: 602 NDSANGNGSKKLTNGWKSTEEDDQGSGTSQTNEQNSVWAKAGGTVES-DGSAESTGRLEE 660
Query: 1215 KPSGWGTEASWGESSCDKWENVGS--------PAAKSFSEWGTEASWGKSFGDKPENVSP 1266
K +G S D+ + S P S S WG + D +
Sbjct: 661 KVTG--ESQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRG 718
Query: 1267 AAKTSSG---WGSEASWGKSSGDRQENVGGSAS--KPLSGWG-AKAS--WGKSSEDKLEE 1318
KT +G WGS A+ +SG + +++ +SGWG K + WG S K
Sbjct: 719 ERKTDNGTEAWGSSATQTFNSGACTDKTSPNSNDTSSVSGWGDPKPTLRWGDS---KGSN 775
Query: 1319 VETTVAKPSSAWGTEAS--WDKSSEVTLEKVA-APAENPLSGWGTEAQDS-GKSSDWSE- 1373
+ S+A G S W E +K A ++ GWG + S G S S+
Sbjct: 776 CQGGWEDDSAATGMIKSNQWGHCKE---DKSAWNDSQKNKQGWGDGQKSSQGWSVSASDN 832
Query: 1374 WKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAR-EDFSTK 1432
W + + + WG + +SG S +++ +++G + SS WG ++
Sbjct: 833 WGESSRSN-HWGEANKKSSSG----GSDSDRSISGWNELG---KTSSFTWGNNINPNNSS 884
Query: 1433 GWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTEN 1492
GW++SSKP++++ GW P K WG +++K W KQ+
Sbjct: 885 GWDESSKPNSSQ--------GWGDPP-KCNQSLGWG-----DSSKPVSSPDWNKQQDIVG 930
Query: 1493 E-SPQPASSN----AW-DLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEW 1540
PA+S W P E E W + E ++ + W
Sbjct: 931 SWGIPPATSKPPGTGWLGGPIPAPAKEEEPTGWEEPSPESIRRKMEIDDGTSAW 984
Score = 51 (23.0 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 1519 WGQSRKEPFKKNRGWASS--SGE-WKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLD 1572
W +++ + W GE WKG N P + V S +N++ T + +D
Sbjct: 1569 WPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINSLSINTVREVD 1625
>CGD|CAL0004905 [details] [associations]
symbol:IFF6 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0009986 "cell surface"
evidence=ISS;IDA] [GO:0009277 "fungal-type cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005937 "mating
projection" evidence=IEA] [GO:0000753 "cell morphogenesis involved
in conjugation with cellular fusion" evidence=IEA] CGD:CAL0004905
GO:GO:0009986 GO:GO:0009277 EMBL:AACQ01000107 InterPro:IPR021031
Pfam:PF11765 RefSeq:XP_714246.1 GeneID:3644087 KEGG:cal:CaO19.4072
Uniprot:Q59XL0
Length = 1086
Score = 158 (60.7 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 84/363 (23%), Positives = 148/363 (40%)
Query: 1174 SEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPS------RKPSGWGTEASWGE 1227
+++ L +S + SS T + ++SD + S S ++PS E S
Sbjct: 343 TDESSSSLSSSTSEQSSSSATSVSASETSDTSSTQESSSSSEVSSTQEPSSSTPEPSSSS 402
Query: 1228 SSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDR 1287
+ E+ + S ++ TEAS +S + +P++ T + +E+S + S
Sbjct: 403 ETSSTQESSSTEGPSSSTDSSTEASSSES------STAPSSSTEASSSTESSTEEPSSST 456
Query: 1288 QENVGGSASKPLSGWGAKASWGKSS---EDKLEEVETTVAKPSSAWGTEASWDKSSEVTL 1344
+ G S+S+ S ++ SS E E ++ + SS G +S D S+++T
Sbjct: 457 E---GPSSSQESSSSEESSTQEPSSSTKESSSTEGPSSTEESSSTEGPSSSTDSSTDIT- 512
Query: 1345 EKVAAPAENPLSGWG-TEAQDS---GKSSDWSEWKDHANATASWGRNGSEENSGWDTKAS 1400
++ E SG G + +D SD S D + AT S N + D+ +
Sbjct: 513 -SASSTDEQSSSGTGQSSTEDEPIDSTESDTSSATDSSTATDSSATNTDTNSESTDSSTA 571
Query: 1401 WKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSAN----EKSIVHQIGGWNV 1456
T + D + S+ E ++ V + D +T E S+ N + S V + G +
Sbjct: 572 TDTSSTDS--NTASSTETNTDVTDSSTDSNTGATESSTATDTNTDATDSSTVSETGATDS 629
Query: 1457 PDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTE--NESPQPASSNAWDLPD--ATGGS 1512
A TD + + T++ G +SS +T N S+ A + D AT S
Sbjct: 630 STA--TDTNTGATESSTDSNTGATESSTATDTNTSATNTDTNTGSNTATNTDDNTATDTS 687
Query: 1513 ETE 1515
TE
Sbjct: 688 STE 690
Score = 154 (59.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 87/401 (21%), Positives = 157/401 (39%)
Query: 1126 DEFDWSLSP---EHNLCSDKPVFEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLG 1182
DE SLS E + S V D S + ++ S + S+ +
Sbjct: 344 DESSSSLSSSTSEQSSSSATSVSASETSDTSSTQESSSSSEVSSTQEPSSSTPEPSSSSE 403
Query: 1183 TSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWG-ESSCDK-WENVGSPA 1240
TS + SS TEG S+D E + S S TEAS ESS ++ + P+
Sbjct: 404 TSSTQESSS--TEGP-SSSTDSSTEASSSESSTAPSSSTEASSSTESSTEEPSSSTEGPS 460
Query: 1241 AKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSAS---K 1297
+ S E+S + E+ S +S+ S SS D ++ ++S +
Sbjct: 461 SSQESSSSEESSTQEPSSSTKESSSTEGPSSTEESSSTEGPSSSTDSSTDITSASSTDEQ 520
Query: 1298 PLSGWGAKASWGK---SSE-DKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAEN 1353
SG G ++ + S+E D +++ A SSA T+ + + + T ++ N
Sbjct: 521 SSSGTGQSSTEDEPIDSTESDTSSATDSSTATDSSATNTDTNSESTDSSTATDTSSTDSN 580
Query: 1354 PLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVG 1413
S T + S+D + ++ + ++ ++ +T A+ + A D + G
Sbjct: 581 TASSTETNTDVTDSSTDSNTGATESSTATDTNTDATDSSTVSETGATDSSTATDT--NTG 638
Query: 1414 SAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLT 1473
+ ++ S GA E ST D++ + N + N D TD S T
Sbjct: 639 ATESSTDSNTGATES-STA--TDTNTSATNTDTNTGSNTATNTDDNTATDTSSTETNTAT 695
Query: 1474 ENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSET 1514
N GT+ ++ + +T+ + + + TGG++T
Sbjct: 696 -NTDGTETNTGATETNTDTSASNTDDNTGSNTATNTGGTDT 735
Score = 133 (51.9 bits), Expect = 0.00024, P = 0.00024
Identities = 73/315 (23%), Positives = 129/315 (40%)
Query: 1211 SPSRKPSGWGTEASWGESSCDKWENVG-SPAAKSFSEWGTEASWGKSFGDKPENVSP--- 1266
SP S +S E S +V S + + S + +S S +P + +P
Sbjct: 340 SPGTDESSSSLSSSTSEQSSSSATSVSASETSDTSSTQESSSSSEVSSTQEPSSSTPEPS 399
Query: 1267 -AAKTSSGWGSEASWGKSSG-DRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVA 1324
+++TSS S ++ G SS D S S +AS S+E EE ++
Sbjct: 400 SSSETSSTQESSSTEGPSSSTDSSTEASSSESSTAPSSSTEAS--SSTESSTEEPSSSTE 457
Query: 1325 KPSSAWGTEASWDKSSEV--TLEKVAAPAENPLSGWGTEAQDS--GKSSDWSEWKDHANA 1380
PSS+ + +S + S++ + K ++ E P S TE S G SS D +A
Sbjct: 458 GPSSSQESSSSEESSTQEPSSSTKESSSTEGPSS---TEESSSTEGPSSSTDSSTDITSA 514
Query: 1381 TASWGRNGSEENSGWDTKASWKTKALDKLD-DVGSAVENSSSVWGAREDFSTKGWEDSSK 1439
+++ E++S ++S + + +D + D SA ++S++ + + T S
Sbjct: 515 SST-----DEQSSSGTGQSSTEDEPIDSTESDTSSATDSSTATDSSATNTDTNSESTDSS 569
Query: 1440 PSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPAS 1499
+ + S + TD S TE++ TD ++ T +E+ S
Sbjct: 570 TATDTSSTDSNTASSTETNTDVTDSSTDSNTGATESSTATDTNTDATDSSTVSETGATDS 629
Query: 1500 SNAWDLPDATGGSET 1514
S A D TG +E+
Sbjct: 630 STATDTN--TGATES 642
>UNIPROTKB|Q59XL0 [details] [associations]
symbol:IFF6 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0009277 "fungal-type cell
wall" evidence=IDA] [GO:0009986 "cell surface" evidence=ISS;IDA]
CGD:CAL0004905 GO:GO:0009986 GO:GO:0009277 EMBL:AACQ01000107
InterPro:IPR021031 Pfam:PF11765 RefSeq:XP_714246.1 GeneID:3644087
KEGG:cal:CaO19.4072 Uniprot:Q59XL0
Length = 1086
Score = 158 (60.7 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 84/363 (23%), Positives = 148/363 (40%)
Query: 1174 SEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPS------RKPSGWGTEASWGE 1227
+++ L +S + SS T + ++SD + S S ++PS E S
Sbjct: 343 TDESSSSLSSSTSEQSSSSATSVSASETSDTSSTQESSSSSEVSSTQEPSSSTPEPSSSS 402
Query: 1228 SSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDR 1287
+ E+ + S ++ TEAS +S + +P++ T + +E+S + S
Sbjct: 403 ETSSTQESSSTEGPSSSTDSSTEASSSES------STAPSSSTEASSSTESSTEEPSSST 456
Query: 1288 QENVGGSASKPLSGWGAKASWGKSS---EDKLEEVETTVAKPSSAWGTEASWDKSSEVTL 1344
+ G S+S+ S ++ SS E E ++ + SS G +S D S+++T
Sbjct: 457 E---GPSSSQESSSSEESSTQEPSSSTKESSSTEGPSSTEESSSTEGPSSSTDSSTDIT- 512
Query: 1345 EKVAAPAENPLSGWG-TEAQDS---GKSSDWSEWKDHANATASWGRNGSEENSGWDTKAS 1400
++ E SG G + +D SD S D + AT S N + D+ +
Sbjct: 513 -SASSTDEQSSSGTGQSSTEDEPIDSTESDTSSATDSSTATDSSATNTDTNSESTDSSTA 571
Query: 1401 WKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSAN----EKSIVHQIGGWNV 1456
T + D + S+ E ++ V + D +T E S+ N + S V + G +
Sbjct: 572 TDTSSTDS--NTASSTETNTDVTDSSTDSNTGATESSTATDTNTDATDSSTVSETGATDS 629
Query: 1457 PDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTE--NESPQPASSNAWDLPD--ATGGS 1512
A TD + + T++ G +SS +T N S+ A + D AT S
Sbjct: 630 STA--TDTNTGATESSTDSNTGATESSTATDTNTSATNTDTNTGSNTATNTDDNTATDTS 687
Query: 1513 ETE 1515
TE
Sbjct: 688 STE 690
Score = 154 (59.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 87/401 (21%), Positives = 157/401 (39%)
Query: 1126 DEFDWSLSP---EHNLCSDKPVFEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLG 1182
DE SLS E + S V D S + ++ S + S+ +
Sbjct: 344 DESSSSLSSSTSEQSSSSATSVSASETSDTSSTQESSSSSEVSSTQEPSSSTPEPSSSSE 403
Query: 1183 TSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWG-ESSCDK-WENVGSPA 1240
TS + SS TEG S+D E + S S TEAS ESS ++ + P+
Sbjct: 404 TSSTQESSS--TEGP-SSSTDSSTEASSSESSTAPSSSTEASSSTESSTEEPSSSTEGPS 460
Query: 1241 AKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSAS---K 1297
+ S E+S + E+ S +S+ S SS D ++ ++S +
Sbjct: 461 SSQESSSSEESSTQEPSSSTKESSSTEGPSSTEESSSTEGPSSSTDSSTDITSASSTDEQ 520
Query: 1298 PLSGWGAKASWGK---SSE-DKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAEN 1353
SG G ++ + S+E D +++ A SSA T+ + + + T ++ N
Sbjct: 521 SSSGTGQSSTEDEPIDSTESDTSSATDSSTATDSSATNTDTNSESTDSSTATDTSSTDSN 580
Query: 1354 PLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVG 1413
S T + S+D + ++ + ++ ++ +T A+ + A D + G
Sbjct: 581 TASSTETNTDVTDSSTDSNTGATESSTATDTNTDATDSSTVSETGATDSSTATDT--NTG 638
Query: 1414 SAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLT 1473
+ ++ S GA E ST D++ + N + N D TD S T
Sbjct: 639 ATESSTDSNTGATES-STA--TDTNTSATNTDTNTGSNTATNTDDNTATDTSSTETNTAT 695
Query: 1474 ENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSET 1514
N GT+ ++ + +T+ + + + TGG++T
Sbjct: 696 -NTDGTETNTGATETNTDTSASNTDDNTGSNTATNTGGTDT 735
Score = 133 (51.9 bits), Expect = 0.00024, P = 0.00024
Identities = 73/315 (23%), Positives = 129/315 (40%)
Query: 1211 SPSRKPSGWGTEASWGESSCDKWENVG-SPAAKSFSEWGTEASWGKSFGDKPENVSP--- 1266
SP S +S E S +V S + + S + +S S +P + +P
Sbjct: 340 SPGTDESSSSLSSSTSEQSSSSATSVSASETSDTSSTQESSSSSEVSSTQEPSSSTPEPS 399
Query: 1267 -AAKTSSGWGSEASWGKSSG-DRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVA 1324
+++TSS S ++ G SS D S S +AS S+E EE ++
Sbjct: 400 SSSETSSTQESSSTEGPSSSTDSSTEASSSESSTAPSSSTEAS--SSTESSTEEPSSSTE 457
Query: 1325 KPSSAWGTEASWDKSSEV--TLEKVAAPAENPLSGWGTEAQDS--GKSSDWSEWKDHANA 1380
PSS+ + +S + S++ + K ++ E P S TE S G SS D +A
Sbjct: 458 GPSSSQESSSSEESSTQEPSSSTKESSSTEGPSS---TEESSSTEGPSSSTDSSTDITSA 514
Query: 1381 TASWGRNGSEENSGWDTKASWKTKALDKLD-DVGSAVENSSSVWGAREDFSTKGWEDSSK 1439
+++ E++S ++S + + +D + D SA ++S++ + + T S
Sbjct: 515 SST-----DEQSSSGTGQSSTEDEPIDSTESDTSSATDSSTATDSSATNTDTNSESTDSS 569
Query: 1440 PSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPAS 1499
+ + S + TD S TE++ TD ++ T +E+ S
Sbjct: 570 TATDTSSTDSNTASSTETNTDVTDSSTDSNTGATESSTATDTNTDATDSSTVSETGATDS 629
Query: 1500 SNAWDLPDATGGSET 1514
S A D TG +E+
Sbjct: 630 STATDTN--TGATES 642
>DICTYBASE|DDB_G0271670 [details] [associations]
symbol:DDB_G0271670 species:44689 "Dictyostelium
discoideum" [GO:0005576 "extracellular region" evidence=IEA]
dictyBase:DDB_G0271670 GO:GO:0005576 EMBL:AAFI02000006
ProtClustDB:CLSZ2431310 RefSeq:XP_645495.1
ProteinModelPortal:Q75JC9 EnsemblProtists:DDB0168484 GeneID:8618123
KEGG:ddi:DDB_G0271670 OMA:EITNEEP Uniprot:Q75JC9
Length = 374
Score = 149 (57.5 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 57/302 (18%), Positives = 116/302 (38%)
Query: 1145 FEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDD 1204
F ++++ S + +++ S + SS +S SS + + SS
Sbjct: 59 FLNILDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 118
Query: 1205 KLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENV 1264
+ S S S + +S SS + S ++ S S + +S S +
Sbjct: 119 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 178
Query: 1265 SPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVA 1324
S ++ +SS S +S SS + S+S S + +S SS ++ +
Sbjct: 179 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 238
Query: 1325 KPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASW 1384
SS+ + +S SS + ++ + + S + + S SS S +++++S
Sbjct: 239 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 298
Query: 1385 GRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANE 1444
+ S +S + +S + + S+ +SSS + S+ SS S++
Sbjct: 299 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 358
Query: 1445 KS 1446
S
Sbjct: 359 SS 360
Score = 147 (56.8 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 59/312 (18%), Positives = 115/312 (36%)
Query: 1181 LGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPA 1240
L TS SS + + SS + S S S + +S SS + S +
Sbjct: 63 LDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 122
Query: 1241 AKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLS 1300
+ S S + +S S + S ++ +SS S +S SS + S+S S
Sbjct: 123 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 182
Query: 1301 GWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGT 1360
+ +S SS ++ + SS+ + +S SS + ++ + + S +
Sbjct: 183 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 242
Query: 1361 EAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSS 1420
+ S SS S +++++S + S +S + +S + + S+ +SS
Sbjct: 243 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 302
Query: 1421 SVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTD 1480
S + S+ SS S++ S + + + S + ++ +
Sbjct: 303 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 362
Query: 1481 DSSWGKQKHTEN 1492
SS EN
Sbjct: 363 SSSSSSSSSGEN 374
Score = 144 (55.7 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 57/299 (19%), Positives = 112/299 (37%)
Query: 1157 NKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKP 1216
+ +++ S + SS +S SS + + SS + S S
Sbjct: 76 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 135
Query: 1217 SGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGS 1276
S + +S SS + S ++ S S + +S S + S ++ +SS S
Sbjct: 136 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 195
Query: 1277 EASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASW 1336
+S SS + S+S S + +S SS ++ + SS+ + +S
Sbjct: 196 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 255
Query: 1337 DKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWD 1396
SS + ++ + + S + + S SS S +++++S + S +S
Sbjct: 256 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 315
Query: 1397 TKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWN 1455
+ +S + + S+ +SSS + S+ SS S++ S G N
Sbjct: 316 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSGEN 374
Score = 144 (55.7 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 57/300 (19%), Positives = 112/300 (37%)
Query: 1147 DLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKL 1206
D S + +++ S + SS +S SS + + SS
Sbjct: 64 DTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 123
Query: 1207 EKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSP 1266
+ S S S + +S SS + S ++ S S + +S S + S
Sbjct: 124 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 1267 AAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKP 1326
++ +SS S +S SS + S+S S + +S SS ++ +
Sbjct: 184 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 243
Query: 1327 SSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGR 1386
SS+ + +S SS + ++ + + S + + S SS S +++++S
Sbjct: 244 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 303
Query: 1387 NGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKS 1446
+ S +S + +S + + S+ +SSS + S+ SS S++ S
Sbjct: 304 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 363
Score = 142 (55.0 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 55/290 (18%), Positives = 110/290 (37%)
Query: 1157 NKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKP 1216
+ +++ S + SS +S SS + + SS + S S
Sbjct: 75 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 134
Query: 1217 SGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGS 1276
S + +S SS + S ++ S S + +S S + S ++ +SS S
Sbjct: 135 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 1277 EASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASW 1336
+S SS + S+S S + +S SS ++ + SS+ + +S
Sbjct: 195 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 254
Query: 1337 DKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWD 1396
SS + ++ + + S + + S SS S +++++S + S +S
Sbjct: 255 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 314
Query: 1397 TKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKS 1446
+ +S + + S+ +SSS + S+ SS S++ S
Sbjct: 315 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 364
Score = 142 (55.0 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 56/307 (18%), Positives = 114/307 (37%)
Query: 1194 TEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASW 1253
T + SS + S S S + +S SS + S ++ S S + +S
Sbjct: 65 TSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 124
Query: 1254 GKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSE 1313
S + S ++ +SS S +S SS + S+S S + +S SS
Sbjct: 125 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 184
Query: 1314 DKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSE 1373
++ + SS+ + +S SS + ++ + + S + + S SS S
Sbjct: 185 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 244
Query: 1374 WKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKG 1433
+++++S + S +S + +S + + S+ +SSS + S+
Sbjct: 245 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 304
Query: 1434 WEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENE 1493
SS S++ S + + + S + ++ + SS + +
Sbjct: 305 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 364
Query: 1494 SPQPASS 1500
S +SS
Sbjct: 365 SSSSSSS 371
Score = 141 (54.7 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 55/302 (18%), Positives = 114/302 (37%)
Query: 1201 SSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDK 1260
SS + S S S + +S SS + S ++ S S + +S S
Sbjct: 70 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 129
Query: 1261 PENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVE 1320
+ S ++ +SS S +S SS + S+S S + +S SS
Sbjct: 130 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 189
Query: 1321 TTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANA 1380
++ + SS+ + +S SS + ++ + + S + + S SS S +++
Sbjct: 190 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 249
Query: 1381 TASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKP 1440
++S + S +S + +S + + S+ +SSS + S+ SS
Sbjct: 250 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 309
Query: 1441 SANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASS 1500
S++ S + + + S + ++ + SS + + S +SS
Sbjct: 310 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 369
Query: 1501 NA 1502
++
Sbjct: 370 SS 371
Score = 141 (54.7 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 55/302 (18%), Positives = 114/302 (37%)
Query: 1201 SSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDK 1260
SS + S S S + +S SS + S ++ S S + +S S
Sbjct: 69 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 128
Query: 1261 PENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVE 1320
+ S ++ +SS S +S SS + S+S S + +S SS
Sbjct: 129 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 188
Query: 1321 TTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANA 1380
++ + SS+ + +S SS + ++ + + S + + S SS S +++
Sbjct: 189 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 248
Query: 1381 TASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKP 1440
++S + S +S + +S + + S+ +SSS + S+ SS
Sbjct: 249 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 308
Query: 1441 SANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASS 1500
S++ S + + + S + ++ + SS + + S +SS
Sbjct: 309 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 368
Query: 1501 NA 1502
++
Sbjct: 369 SS 370
Score = 141 (54.7 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 55/302 (18%), Positives = 114/302 (37%)
Query: 1201 SSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDK 1260
SS + S S S + +S SS + S ++ S S + +S S
Sbjct: 68 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 127
Query: 1261 PENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVE 1320
+ S ++ +SS S +S SS + S+S S + +S SS
Sbjct: 128 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 187
Query: 1321 TTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANA 1380
++ + SS+ + +S SS + ++ + + S + + S SS S +++
Sbjct: 188 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 247
Query: 1381 TASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKP 1440
++S + S +S + +S + + S+ +SSS + S+ SS
Sbjct: 248 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 307
Query: 1441 SANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASS 1500
S++ S + + + S + ++ + SS + + S +SS
Sbjct: 308 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 367
Query: 1501 NA 1502
++
Sbjct: 368 SS 369
Score = 141 (54.7 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 55/302 (18%), Positives = 114/302 (37%)
Query: 1201 SSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDK 1260
SS + S S S + +S SS + S ++ S S + +S S
Sbjct: 67 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 126
Query: 1261 PENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVE 1320
+ S ++ +SS S +S SS + S+S S + +S SS
Sbjct: 127 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186
Query: 1321 TTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANA 1380
++ + SS+ + +S SS + ++ + + S + + S SS S +++
Sbjct: 187 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 246
Query: 1381 TASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKP 1440
++S + S +S + +S + + S+ +SSS + S+ SS
Sbjct: 247 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 306
Query: 1441 SANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASS 1500
S++ S + + + S + ++ + SS + + S +SS
Sbjct: 307 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 366
Query: 1501 NA 1502
++
Sbjct: 367 SS 368
Score = 141 (54.7 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 55/302 (18%), Positives = 114/302 (37%)
Query: 1201 SSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDK 1260
SS + S S S + +S SS + S ++ S S + +S S
Sbjct: 66 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 125
Query: 1261 PENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVE 1320
+ S ++ +SS S +S SS + S+S S + +S SS
Sbjct: 126 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185
Query: 1321 TTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANA 1380
++ + SS+ + +S SS + ++ + + S + + S SS S +++
Sbjct: 186 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 245
Query: 1381 TASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKP 1440
++S + S +S + +S + + S+ +SSS + S+ SS
Sbjct: 246 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 305
Query: 1441 SANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASS 1500
S++ S + + + S + ++ + SS + + S +SS
Sbjct: 306 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 365
Query: 1501 NA 1502
++
Sbjct: 366 SS 367
Score = 141 (54.7 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 55/309 (17%), Positives = 118/309 (38%)
Query: 1206 LEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVS 1265
L+ + S S S + +S SS + S ++ S S + +S S + S
Sbjct: 63 LDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 122
Query: 1266 PAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAK 1325
++ +SS S +S SS + S+S S + +S SS ++ +
Sbjct: 123 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 182
Query: 1326 PSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWG 1385
SS+ + +S SS + ++ + + S + + S SS S +++++S
Sbjct: 183 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 242
Query: 1386 RNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEK 1445
+ S +S + +S + + S+ +SSS + S+ SS S++
Sbjct: 243 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 302
Query: 1446 SIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDL 1505
S + + + S + ++ + SS + + S +SS++
Sbjct: 303 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 362
Query: 1506 PDATGGSET 1514
++ S +
Sbjct: 363 SSSSSSSSS 371
Score = 140 (54.3 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 55/309 (17%), Positives = 116/309 (37%)
Query: 1203 DDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPE 1262
D + S S S + +S SS + S ++ S S + +S S
Sbjct: 64 DTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 123
Query: 1263 NVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETT 1322
+ S ++ +SS S +S SS + S+S S + +S SS ++
Sbjct: 124 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 1323 VAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATA 1382
+ SS+ + +S SS + ++ + + S + + S SS S +++++
Sbjct: 184 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 243
Query: 1383 SWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSA 1442
S + S +S + +S + + S+ +SSS + S+ SS S+
Sbjct: 244 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 303
Query: 1443 NEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNA 1502
+ S + + + S + ++ + SS + + S +SS++
Sbjct: 304 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 363
Query: 1503 WDLPDATGG 1511
++ G
Sbjct: 364 SSSSSSSSG 372
Score = 139 (54.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 55/310 (17%), Positives = 116/310 (37%)
Query: 1204 DKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPEN 1263
D + S S S + +S SS + S ++ S S + +S S +
Sbjct: 64 DTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 123
Query: 1264 VSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTV 1323
S ++ +SS S +S SS + S+S S + +S SS ++
Sbjct: 124 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 1324 AKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATAS 1383
+ SS+ + +S SS + ++ + + S + + S SS S +++++S
Sbjct: 184 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 243
Query: 1384 WGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSAN 1443
+ S +S + +S + + S+ +SSS + S+ SS S++
Sbjct: 244 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 303
Query: 1444 EKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAW 1503
S + + + S + ++ + SS + + S +SS++
Sbjct: 304 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 363
Query: 1504 DLPDATGGSE 1513
++ E
Sbjct: 364 SSSSSSSSGE 373
Score = 138 (53.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 54/302 (17%), Positives = 114/302 (37%)
Query: 1201 SSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDK 1260
+S + S S S + +S SS + S ++ S S + +S S
Sbjct: 65 TSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 124
Query: 1261 PENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVE 1320
+ S ++ +SS S +S SS + S+S S + +S SS
Sbjct: 125 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 184
Query: 1321 TTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANA 1380
++ + SS+ + +S SS + ++ + + S + + S SS S +++
Sbjct: 185 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 244
Query: 1381 TASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKP 1440
++S + S +S + +S + + S+ +SSS + S+ SS
Sbjct: 245 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 304
Query: 1441 SANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASS 1500
S++ S + + + S + ++ + SS + + S +SS
Sbjct: 305 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 364
Query: 1501 NA 1502
++
Sbjct: 365 SS 366
Score = 138 (53.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 54/302 (17%), Positives = 114/302 (37%)
Query: 1238 SPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASK 1297
S ++ S S + +S S + S ++ +SS S +S SS + S+S
Sbjct: 72 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 131
Query: 1298 PLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSG 1357
S + +S SS ++ + SS+ + +S SS + ++ + + S
Sbjct: 132 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 191
Query: 1358 WGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVE 1417
+ + S SS S +++++S + S +S + +S + + S+
Sbjct: 192 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 251
Query: 1418 NSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAK 1477
+SSS + S+ SS S++ S + + + S + ++
Sbjct: 252 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 311
Query: 1478 GTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSS 1537
+ SS + + S +SS++ ++ S + S + +SSS
Sbjct: 312 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 371
Query: 1538 GE 1539
GE
Sbjct: 372 GE 373
Score = 138 (53.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 55/307 (17%), Positives = 116/307 (37%)
Query: 1209 AGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAA 1268
+ S S S + +S SS + S ++ S S + +S S + S ++
Sbjct: 67 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 126
Query: 1269 KTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSS 1328
+SS S +S SS + S+S S + +S SS ++ + SS
Sbjct: 127 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186
Query: 1329 AWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNG 1388
+ + +S SS + ++ + + S + + S SS S +++++S +
Sbjct: 187 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 246
Query: 1389 SEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIV 1448
S +S + +S + + S+ +SSS + S+ SS S++ S
Sbjct: 247 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 306
Query: 1449 HQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDA 1508
+ + + S + ++ + SS + + S +SS++ +
Sbjct: 307 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 366
Query: 1509 TGGSETE 1515
+ S E
Sbjct: 367 SSSSSGE 373
Score = 137 (53.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 54/301 (17%), Positives = 111/301 (36%)
Query: 1201 SSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDK 1260
SS + S S S + +S SS + S ++ S S + +S S
Sbjct: 74 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 133
Query: 1261 PENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVE 1320
+ S ++ +SS S +S SS + S+S S + +S SS
Sbjct: 134 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 193
Query: 1321 TTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANA 1380
++ + SS+ + +S SS + ++ + + S + + S SS S +++
Sbjct: 194 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 253
Query: 1381 TASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKP 1440
++S + S +S + +S + + S+ +SSS + S+ SS
Sbjct: 254 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 313
Query: 1441 SANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASS 1500
S++ S + + + S + ++ + SS + + S +
Sbjct: 314 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSGE 373
Query: 1501 N 1501
N
Sbjct: 374 N 374
Score = 135 (52.6 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 55/306 (17%), Positives = 113/306 (36%)
Query: 1189 SSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWG 1248
SS + + SS + S S S + +S SS + S ++ S S
Sbjct: 66 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 125
Query: 1249 TEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASW 1308
+ +S S + S ++ +SS S +S SS + S+S S + +S
Sbjct: 126 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185
Query: 1309 GKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKS 1368
SS ++ + SS+ + +S SS + ++ + + S + + S S
Sbjct: 186 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 245
Query: 1369 SDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGARED 1428
S S +++++S + S +S + +S + + S+ +SSS +
Sbjct: 246 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 305
Query: 1429 FSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQK 1488
S+ SS S++ S + + + S + ++ + SS
Sbjct: 306 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 365
Query: 1489 HTENES 1494
+ + S
Sbjct: 366 SSSSSS 371
Score = 130 (50.8 bits), Expect = 0.00011, P = 0.00011
Identities = 54/315 (17%), Positives = 117/315 (37%)
Query: 1223 ASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGK 1282
A G+ + N+ ++ S S + +S S + S ++ +SS S +S
Sbjct: 49 AEVGDLGVASFLNILDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 108
Query: 1283 SSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEV 1342
SS + S+S S + +S SS ++ + SS+ + +S SS
Sbjct: 109 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 168
Query: 1343 TLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWK 1402
+ ++ + + S + + S SS S +++++S + S +S + +S
Sbjct: 169 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 228
Query: 1403 TKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGT 1462
+ + S+ +SSS + S+ SS S++ S + + +
Sbjct: 229 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 288
Query: 1463 DDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQS 1522
S + ++ + SS + + S +SS++ ++ S + S
Sbjct: 289 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 348
Query: 1523 RKEPFKKNRGWASSS 1537
+ +SSS
Sbjct: 349 SSSSSSSSSSSSSSS 363
Score = 129 (50.5 bits), Expect = 0.00014, P = 0.00014
Identities = 55/308 (17%), Positives = 113/308 (36%)
Query: 1231 DKWENVGSPAAKSFSE-WGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQE 1289
+K VG SF T +S S + S ++ +SS S +S SS
Sbjct: 46 NKMAEVGDLGVASFLNILDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 105
Query: 1290 NVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAA 1349
+ S+S S + +S SS ++ + SS+ + +S SS + ++
Sbjct: 106 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 165
Query: 1350 PAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKL 1409
+ + S + + S SS S +++++S + S +S + +S + +
Sbjct: 166 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 225
Query: 1410 DDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGK 1469
S+ +SSS + S+ SS S++ S + + + S
Sbjct: 226 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 285
Query: 1470 QKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKK 1529
+ ++ + SS + + S +SS++ ++ S + S
Sbjct: 286 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 345
Query: 1530 NRGWASSS 1537
+ +SSS
Sbjct: 346 SSSSSSSS 353
>UNIPROTKB|F1MY06 [details] [associations]
symbol:TNRC6B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 OMA:NETGRQP EMBL:DAAA02014709 IPI:IPI00711947
UniGene:Bt.41131 Ensembl:ENSBTAT00000028072 NextBio:20874758
Uniprot:F1MY06
Length = 1836
Score = 183 (69.5 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 113/464 (24%), Positives = 185/464 (39%)
Query: 1122 DGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSW-LENKQENANWDSEADCRKSSEDKWEK 1180
+G E E W +P K SW N+ +W+ + S+++KW +
Sbjct: 449 NGKEREDSWKGAPVQKSTGSK--------SDSWDNNNRSTGGSWNFGP--QDSNDNKWGE 498
Query: 1181 LGTSLEKPSSGWRTEGAWGK--SSDD-KLEKAGSPSRKPSGWGTEASWGESSCDKW-ENV 1236
G K +SG ++G W + SD+ K+ + P++ S G +W EN
Sbjct: 499 -GN---KMTSGV-SQGEWKQPTGSDEFKIGEWSGPNQPNSSTG---AWDNQKGHPLPENQ 550
Query: 1237 GSPAAKSFSEWG-TEASWGKSFGDKPENVSPAAKTSSGWGS-EASWGKSSGDRQENVGGS 1294
G+ A WG + +S G G + + A +S S S+ + D Q +
Sbjct: 551 GNAQAPC---WGRSSSSTGSEVGGQSTGSNHKAGSSDSHNSGRRSYRPTHPDCQAVLQTL 607
Query: 1295 ASKP-LSGWG-AKASWGKSS--EDKLEEVETTVAKPS--SAWGTEASWDKSSEVTLEKVA 1348
S+ L + WG++ +D + +VE V +P S GTE W+ ++ T
Sbjct: 608 LSRTDLDPRVLSNTGWGQTQIKQDTVWDVEE-VPRPEGKSDKGTEG-WESAATQTKSSGG 665
Query: 1349 ---APAE-NPL-SGWG-----TEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTK 1398
AP++ N + SGWG TE +D + W+++K++ ++ GR + +S W+
Sbjct: 666 WGDAPSQSNQMKSGWGELSASTEWKDPKNTGGWNDYKNNNSSNWGGGRPDEKTSSSWNEN 725
Query: 1399 ASWKTKALDKLDDVGSAVENSSSVWGAREDFS-TKGWEDS-SKP-SANEKSIVHQIGGW- 1454
+S K + + + WG D + T WE++ SKP S + +IG W
Sbjct: 726 SS-KDQGWGGGRQPNQGWTSGKNGWGEEVDQAKTSNWENAASKPVSGWGEGGQSEIGTWG 784
Query: 1455 ---NVPDA-KGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENES-----PQPASSNAWD- 1504
N A KG + C TE G SSW KQ + PQP +S +W
Sbjct: 785 SGGNASLASKGGWEDCKRSPAWTET--GRQPSSWNKQHQQQPPPQQLPPPQPEASGSWGG 842
Query: 1505 -LPDATGGSETEMQVWGQSRKEPFKKNR---GWASSSGEWKGKK 1544
P G W + K+ GW S + +K
Sbjct: 843 PAPPPPGNGRPSNSNWSSGPQPVTPKDEEPSGWEEPSPQSISRK 886
Score = 164 (62.8 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 106/433 (24%), Positives = 159/433 (36%)
Query: 1148 LVEDQSWLENK-QENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKS-SDDK 1205
++ + W + + +++ WD E R E K +K E ++ ++ G WG + S
Sbjct: 617 VLSNTGWGQTQIKQDTVWDVEEVPRP--EGKSDKGTEGWESAATQTKSSGGWGDAPSQSN 674
Query: 1206 LEKAGSPSRKPSG-WG---TEASWGESSCDKWENVGS--PAAKSFSEWGTEASWGKSFGD 1259
K+G S W W + + N G P K+ S W +S + +G
Sbjct: 675 QMKSGWGELSASTEWKDPKNTGGWNDYKNNNSSNWGGGRPDEKTSSSWNENSSKDQGWGG 734
Query: 1260 KPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEV 1319
+ +GWG E K+S EN +ASKP+SGWG G+S E+
Sbjct: 735 GRQPNQGWTSGKNGWGEEVDQAKTSN--WEN---AASKPVSGWG---EGGQS------EI 780
Query: 1320 ETTVAKPSSAWGTEASWD--KSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDH 1377
T + +++ ++ W+ K S E P S W + Q
Sbjct: 781 GTWGSGGNASLASKGGWEDCKRSPAWTETGRQP-----SSWNKQHQQQPPPQQLPP--PQ 833
Query: 1378 ANATASWGR-------NGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGARE--- 1427
A+ SWG NG NS W +S K D+ S E S +R+
Sbjct: 834 PEASGSWGGPAPPPPGNGRPSNSNW---SSGPQPVTPK-DEEPSGWEEPSPQSISRKMDI 889
Query: 1428 DFSTKGWEDSSKPSANEKSI----VHQIGG-----WNVPDAK-GTDDSCWGKQKLTENAK 1477
D T W D + S N K++ + GG N+P G S W K T +A
Sbjct: 890 DDGTSAWGDPN--SYNYKNVNLWDKNSQGGPAPREANLPTPMTGKSASVWSKS--TPSAP 945
Query: 1478 GTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNR-----G 1532
S+WG+ NES S W D TG S T + K N G
Sbjct: 946 DNGTSAWGEP----NES-----SPGWGEMDDTGASTTGWGTAPSNAPNAMKPNSKSMQDG 996
Query: 1533 WASSSGEWKGKKN 1545
W + G G ++
Sbjct: 997 WGENDGPVAGTRH 1009
Score = 156 (60.0 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 89/341 (26%), Positives = 132/341 (38%)
Query: 1146 EDLVEDQSWLENKQENANWDS-------EADCRKSSEDKWEKLGTSLEKPSSGW----RT 1194
E+ +DQ W +Q N W S E D K+S WE + KP SGW ++
Sbjct: 724 ENSSKDQGWGGGRQPNQGWTSGKNGWGEEVDQAKTSN--WENAAS---KPVSGWGEGGQS 778
Query: 1195 E-GAWGKSSDDKLEKAGS--PSRKPSGWGTEASWGESSCDKW-------ENVGSPAAKSF 1244
E G WG + L G ++ W TE SS +K + + P ++
Sbjct: 779 EIGTWGSGGNASLASKGGWEDCKRSPAW-TETGRQPSSWNKQHQQQPPPQQLPPPQPEAS 837
Query: 1245 SEWGTEA----SWGK----SFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSAS 1296
WG A G+ ++ P+ V+P + SGW E S S + G SA
Sbjct: 838 GSWGGPAPPPPGNGRPSNSNWSSGPQPVTPKDEEPSGW-EEPSPQSISRKMDIDDGTSAW 896
Query: 1297 KPLSGWGAKAS--WGKSSEDKLEEVETTVAKPSSAWGTEAS-WDKSSEVTLEKVAAPAEN 1353
+ + K W K+S+ E + P + G AS W KS+ +AP +N
Sbjct: 897 GDPNSYNYKNVNLWDKNSQGGPAPREANLPTPMT--GKSASVWSKSTP------SAP-DN 947
Query: 1354 PLSGWGTEAQDSGKSSDWSEWKDHANATASWGR------NGSEENS-----GWDTK---- 1398
S WG E +S S W E D +T WG N + NS GW
Sbjct: 948 GTSAWG-EPNES--SPGWGEMDDTGASTTGWGTAPSNAPNAMKPNSKSMQDGWGENDGPV 1004
Query: 1399 ASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSK 1439
A + + ++ DD G V N++ G+ ++ W K
Sbjct: 1005 AGTRHPSWEEEDDGG--VWNTAGSQGSASSHNSASWGQGGK 1043
Score = 147 (56.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 115/501 (22%), Positives = 191/501 (38%)
Query: 1158 KQENANWDSEADCRKSS---EDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLE-KAGSPS 1213
K+ +W A +KS+ D W+ S T G+W D + K G +
Sbjct: 451 KEREDSWKG-APVQKSTGSKSDSWDNNNRS---------TGGSWNFGPQDSNDNKWGEGN 500
Query: 1214 RKPSGWGTEASWGE-SSCDKWENVGSPAAKSFSEWGTEASWGKSFGDK-PENVSPA---- 1267
+ SG ++ W + + D+++ +G + + T A W G PEN A
Sbjct: 501 KMTSGV-SQGEWKQPTGSDEFK-IGEWSGPNQPNSSTGA-WDNQKGHPLPENQGNAQAPC 557
Query: 1268 -AKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAK- 1325
++SS GSE G+S+G + GS+ SG + S+ + D ++T +++
Sbjct: 558 WGRSSSSTGSEVG-GQSTGSNHK--AGSSDSHNSG---RRSYRPTHPDCQAVLQTLLSRT 611
Query: 1326 ---P----SSAWG-TEASWDKSSEVTLEKVAAP---AENPLSGWGTEAQDSGKSSDWSEW 1374
P ++ WG T+ D +V E+V P ++ GW + A + S W +
Sbjct: 612 DLDPRVLSNTGWGQTQIKQDTVWDV--EEVPRPEGKSDKGTEGWESAATQTKSSGGWGDA 669
Query: 1375 KDHANATAS-WGR-NGSEENSGWDTKASWKTKALDKLDDVGSAV--ENSSSVWGAREDFS 1430
+N S WG + S E W + + G E +SS W
Sbjct: 670 PSQSNQMKSGWGELSASTEWKDPKNTGGWNDYKNNNSSNWGGGRPDEKTSSSWNENSS-K 728
Query: 1431 TKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHT 1490
+GW +P+ S + GW + S W ENA S WG+ +
Sbjct: 729 DQGWGGGRQPNQGWTSGKN---GWG-EEVDQAKTSNW------ENAASKPVSGWGEGGQS 778
Query: 1491 E------NESPQPASSNAW-DLPDATGGSETEMQV--WGQSRKE---PFKKNRGWASSSG 1538
E + AS W D + +ET Q W + ++ P + +SG
Sbjct: 779 EIGTWGSGGNASLASKGGWEDCKRSPAWTETGRQPSSWNKQHQQQPPPQQLPPPQPEASG 838
Query: 1539 EWKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLDMFTSEEQDILSDVEPIMRSIRRIMHQ 1598
W G PP PG + N+ ++ Q + T ++++ EP +SI R M
Sbjct: 839 SWGGPA--PP-PPG---NGRPSNSNWSSGPQPV---TPKDEEPSGWEEPSPQSISRKMD- 888
Query: 1599 SGYNDGDRLSADDKSFIFDNV 1619
+DG D S+ + NV
Sbjct: 889 --IDDGTSAWGDPNSYNYKNV 907
Score = 44 (20.5 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 235 DPNSTTKAWLEKMRTLFIRKGS-----GFSSRSVIT-GDAYK----RVNEIGVPFEIAQR 284
+PNS AW ++ RKG+ SS V T G A + ++ GV F ++ R
Sbjct: 303 NPNSNPSAWPALVQEGNSRKGALETETSNSSAQVSTVGQASREQQSKMENAGVNFVVSGR 362
Query: 285 ITFEERVNVHN 295
E+ +HN
Sbjct: 363 ----EQAQIHN 369
Score = 41 (19.5 bits), Expect = 0.00099, Sum P(3) = 0.00099
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 189 SRSGTPNFESQEV------ESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKA 242
S G+ NF Q+ E N + V Q + T + G +Q PNS+T A
Sbjct: 479 STGGSWNFGPQDSNDNKWGEGNKMTSGVSQGEWKQPTGSDEFKIGEWSGPNQ-PNSSTGA 537
Query: 243 W 243
W
Sbjct: 538 W 538
Score = 40 (19.1 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 1439 KPSANEKSIV-HQIGGWNVPDAKGTDDSCW 1467
KPS+ S + GW D++ S W
Sbjct: 1612 KPSSPWSSTAPRSVRGWGTQDSRLASASTW 1641
Score = 39 (18.8 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 21/77 (27%), Positives = 27/77 (35%)
Query: 1501 NAWDL-PDATGGSETEM--QVWGQSRKEPFKK------NRGWASS--SG-EWKGKKNRPP 1548
N +D+ P T G T W ++ P K N W G WKG +N P
Sbjct: 1438 NQFDIIPGDTLGGHTGPAGDSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDP 1497
Query: 1549 RSPGVVNDDSTVNAMYT 1565
S V S + T
Sbjct: 1498 ESDPYVTPGSVLGGTAT 1514
>ZFIN|ZDB-GENE-030131-7440 [details] [associations]
symbol:si:dkey-54k13.1 "si:dkey-54k13.1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000449 InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 Pfam:PF00627 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-7440 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
SUPFAM:SSF46934 GeneTree:ENSGT00410000025966 InterPro:IPR019486
InterPro:IPR026805 Pfam:PF10427 Pfam:PF12938 EMBL:BX470190
EMBL:BX927111 IPI:IPI00890464 Ensembl:ENSDART00000113726
Ensembl:ENSDART00000151634 Uniprot:E7F055
Length = 1817
Score = 158 (60.7 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 87/362 (24%), Positives = 132/362 (36%)
Query: 1189 SSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWG 1248
S G + G WG S G + G WG S+ + N+ +P A S W
Sbjct: 237 SQGGASRG-WG-SGQSPASGEGKNEVSSTSVGARG-WGSSNFNL--NL-NPNANP-SAWP 289
Query: 1249 TEASWGKSFGDKPENVS-PAAKTSSGWGSEASWGKS-SGDRQENVGGSASKPLSGWGAKA 1306
G G S P S G+ S G S SG G SAS SG G+
Sbjct: 290 VLGHEGSGMGGGSSGGSNPPPNLCSPPGTLPSQGSSNSGSIGGPNGNSASNGGSGNGS-T 348
Query: 1307 SWGK-SSEDKLEEVETTVAKPS-SAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQD 1364
+WG D E T S S+ + D + T ++ +P + LS WG
Sbjct: 349 TWGSIMPSDSSEPHSTPSTNVSFSSEPQNLNTDGPNH-TKQEPRSPGHS-LSNWGVGPPG 406
Query: 1365 SGK--SSDWSEWKDHANATASWGRN-----GSEENSGWDTKASWKTKALDKLDDVGSAVE 1417
G S + + + WG G ++S WD+ W G A
Sbjct: 407 MGSFVQSQGGSSQVNGDREPIWGNGDAKSGGGSKDSDWDS-GHWVQGGASGTSGWGQAA- 464
Query: 1418 NSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDS--CWGKQKLTEN 1475
SS WG + TKGW S P+ E+ + + G N P ++G+ DS C +++ +
Sbjct: 465 -SSGDWGKHSNIDTKGWNSSGSPT-QEQQLNSWVRGPNAPASEGSSDSMECHHRRR---D 519
Query: 1476 AKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWAS 1535
D++S ++ P+ + W + E + +S ++ W S
Sbjct: 520 RSSRDETS--PILPAQDMDPRVLCNTGWGQTPVRQHTAWETEEAARSNRKNDIGTEAWGS 577
Query: 1536 SS 1537
SS
Sbjct: 578 SS 579
Score = 150 (57.9 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 86/345 (24%), Positives = 123/345 (35%)
Query: 1224 SWGESSCDKWENVGSPAAKSFSEWGTEASWGK-SFGDKPENVSPAAKTSSGWGSEASWGK 1282
+WG SS NVG P + S S + + G K E P+ + GWG+ S +
Sbjct: 574 AWGSSS--NAANVG-PTSNSGSANPNSGTTSRPDSGGKSEGPCPSTGAAPGWGTAMSSPQ 630
Query: 1283 SSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEA---SWDKS 1339
+ + S KP G G WG +S + K WG+E +W+ S
Sbjct: 631 AGSGWADTT--SNKKPSIGPG---DWGSTSAGG---PGGNLQKSGQTWGSEEKSPTWEDS 682
Query: 1340 SEVTLEKVAAPAENPLS-GWGT-EAQDSGKSSDWSE---WKDHANATASWGRNGSEENSG 1394
K E P S GWG +SG +W E K + ++++W G+ N G
Sbjct: 683 HAKA--KPQCWVEGPKSHGWGNGPGGESGSGGEWGEPGDGKKNGPSSSTWEGEGTGLNEG 740
Query: 1395 WDTKASWKTKALDKLDDVGSAVENSSSVWGA--REDFSTKGWEDSSKPSANEKSIVHQIG 1452
W TK VG N WG R +GW + + N S +G
Sbjct: 741 ---SRGW-TKPSA---GVGG---N----WGEAQRPSVPPQGWNNKPQEGTNGNSTSGSMG 786
Query: 1453 GWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGS 1512
W P + SC G N G G E SP P+ ++ D T
Sbjct: 787 SWGGPSS--VKQSCSGWNG--GNGGGVKPDHTGDPTGWEEPSP-PSIRRKMEIDDGTS-- 839
Query: 1513 ETEMQVWGQSRKEPFKKNRG-WASSSGEWKGKKNRPPRSPGVVND 1556
VWG + K W ++ +GK P + V N+
Sbjct: 840 -----VWGDP--STYNKTVNLWDRNNPGMQGKPG-PSNANNVPNN 876
Score = 41 (19.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 215 EVRGTAKSSRDV-DARFGVSQDPNSTTKAW 243
EV T+ +R + F ++ +PN+ AW
Sbjct: 259 EVSSTSVGARGWGSSNFNLNLNPNANPSAW 288
>ZFIN|ZDB-GENE-061207-48 [details] [associations]
symbol:si:dkey-10p5.9 "si:dkey-10p5.9" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000449
InterPro:IPR000504 InterPro:IPR009060 InterPro:IPR012677
Pfam:PF00627 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061207-48
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 InterPro:IPR026805
Pfam:PF10427 Pfam:PF12938 EMBL:AL954746 IPI:IPI00919590
Ensembl:ENSDART00000112423 ArrayExpress:E9QB90 Bgee:E9QB90
Uniprot:E9QB90
Length = 1534
Score = 156 (60.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 115/457 (25%), Positives = 177/457 (38%)
Query: 1150 EDQSWLENK---QEN-ANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDK 1205
E W N+ QE+ ++W + + S D E E+ SS + D +
Sbjct: 235 EGTEWDANEAPSQEHMSSWGPDTPASEGSRDSSEGHPRKRERSSSADLVPLLPKQDLDPR 294
Query: 1206 -LEKAG---SPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKP 1261
L +G +P R+ + W EAS DK +VG+ +WG+ ++ S G P
Sbjct: 295 VLCNSGWGQTPVRQHTVWEMEAS-----TDKKNDVGT------EDWGSSSNTA-STGPPP 342
Query: 1262 -------ENVSPAAK--TSSGWGS-----EASWGKSSG-DRQENVG-G--SASKPLSGWG 1303
N+SP + TS G A WG S Q N G G SA+K +S G
Sbjct: 343 PPPGCANSNISPPPRMDTSKSEGHCRVMPNAGWGGSVPVSAQPNSGWGEPSANKKVSN-G 401
Query: 1304 AKASWGKSSEDKLEEVETTVAKPSSAWGTEA---SW-DKSSEVTLEKVAAPAENPLSGWG 1359
+ +WG D + +W +E SW D +S+ T + ++ SGWG
Sbjct: 402 SGCNWG----DPIPVAPNISGCNGQSWASEEKSPSWNDCTSQKTTQNWGDGPKSS-SGWG 456
Query: 1360 TEA-QDSGKSSDWSEWKDHANATASW---GRNGSEENSGWDTKASWKTKALDKLDDVGSA 1415
+ +SG+ + SE K+ ++ ++SW RN E GW TKAS
Sbjct: 457 SSGCANSGEWGESSEMKN-SSGSSSWEPDSRNCKETQRGW-TKAS--------------- 499
Query: 1416 VENSSSVWGARE--DFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLT 1473
S WG + + ST+GW + S + IG W P++ +S W +
Sbjct: 500 -PAQSGCWGEAQHTNGSTQGWGGKLQESMCGNNGSGGIGSWGGPNSVKQSNSGWSSRCRQ 558
Query: 1474 ENAKGTDDSSWGKQKHTENESPQPAS-SNAWDLPDATG--GSET----EMQVWGQ--SRK 1524
E G + + W E P P+S D+ D T G + + +W + S+
Sbjct: 559 ET--GDESTGW--------EEPSPSSVRRKMDIDDGTSTWGDPSAYSKSVNMWDRNHSQN 608
Query: 1525 EPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDSTVN 1561
P N G ++ N P R N S N
Sbjct: 609 HPGTNNSGNGNNLSV-PNSANHPQRQGPTQNHVSGSN 644
Score = 153 (58.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 106/420 (25%), Positives = 163/420 (38%)
Query: 1157 NKQENANWDS-EADCRKSSEDKWEKLGTS------LEKPSSGWRTEGAWGKS-SDDKLE- 1207
+K A W S A +S + W+ +G S + S GW G WGK S + E
Sbjct: 183 SKDGTAFWGSGNAKNGESKDSGWDSVGVSSWGQGGASRGSRGW---GDWGKQPSTEGTEW 239
Query: 1208 KAG-SPSRKP-SGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVS 1265
A +PS++ S WG + E S D E G P + E + A +++
Sbjct: 240 DANEAPSQEHMSSWGPDTPASEGSRDSSE--GHPRKR---ERSSSADLVPLL--PKQDLD 292
Query: 1266 PAAKTSSGWGS-----EASWG-KSSGDRQENVG----GSASKPLSGWGAKASWG--KSSE 1313
P +SGWG W ++S D++ +VG GS+S S G S+
Sbjct: 293 PRVLCNSGWGQTPVRQHTVWEMEASTDKKNDVGTEDWGSSSNTASTGPPPPPPGCANSNI 352
Query: 1314 DKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWS- 1372
++T+ ++ A W S V+ + P SGWG E + K S+ S
Sbjct: 353 SPPPRMDTSKSEGHCRVMPNAGWGGSVPVSAQ--------PNSGWG-EPSANKKVSNGSG 403
Query: 1373 -EWKDHANATASW-GRNG----SEENS-GWDTKASWKTKALDKLDDVGSAVENSSSVWGA 1425
W D + G NG SEE S W+ S KT + G ++SS WG+
Sbjct: 404 CNWGDPIPVAPNISGCNGQSWASEEKSPSWNDCTSQKTT-----QNWGDGPKSSSG-WGS 457
Query: 1426 REDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWG 1485
++ W +SS+ + S W PD++ +C Q+ A WG
Sbjct: 458 SGCANSGEWGESSEMKNSSGS-----SSWE-PDSR----NCKETQRGWTKASPAQSGCWG 507
Query: 1486 KQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKN 1545
+ +HT N S Q + GS + WG + N GW+S + G ++
Sbjct: 508 EAQHT-NGSTQGWGGKLQESMCGNNGSGG-IGSWGGPNSVK-QSNSGWSSRCRQETGDES 564
Score = 140 (54.3 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 99/464 (21%), Positives = 174/464 (37%)
Query: 1159 QENANWDSEADCRKSSEDKWEKLGTSLE-KPS-SGWRTEGAWGKSSDDKLEKAGSPSRKP 1216
Q N+ W + +K S G + P+ SG + +W +S++K SPS
Sbjct: 384 QPNSGWGEPSANKKVSNGSGCNWGDPIPVAPNISGCNGQ-SW--ASEEK-----SPSWND 435
Query: 1217 -SGWGTEASWGES--SCDKWENVGSPAAKSFSEWGTEASWGKSFGD---KPENVSPAAKT 1270
+ T +WG+ S W GS + EWG + S G +P++ + +T
Sbjct: 436 CTSQKTTQNWGDGPKSSSGW---GSSGCANSGEWGESSEMKNSSGSSSWEPDSRN-CKET 491
Query: 1271 SSGWGSEASWGKSS--GDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSS 1328
GW ++AS +S G+ Q G + GWG K + + + P+S
Sbjct: 492 QRGW-TKASPAQSGCWGEAQHTNGST-----QGWGGKLQESMCGNNGSGGIGSW-GGPNS 544
Query: 1329 AWGTEASWDKS--SEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGR 1386
+ + W E E +P S D G S+ W + ++ + W R
Sbjct: 545 VKQSNSGWSSRCRQETGDESTGWEEPSPSSVRRKMDIDDGTST-WGDPSAYSKSVNMWDR 603
Query: 1387 NGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKS 1446
N S+ + G + + + L SA N G ++ G +++ PS E
Sbjct: 604 NHSQNHPGTNNSGNG-----NNLSVPNSA--NHPQRQGPTQNH-VSGSNNNASPSQGECP 655
Query: 1447 I--VHQIG-GWN-VPDAK-GTDDSCWGKQKLTENAKGTDDSSWGKQKH-----TENESPQ 1496
+ + + GW +P + T+ S WG+ + ++ S+WG+ +E
Sbjct: 656 LNRISMVNPGWGEIPKVQPNTESSSWGETASSSSSVDNGTSAWGQSSRGRGGWSEGSRDS 715
Query: 1497 PASSNAWDLPDATG----GSETEMQVWGQSRKEPFKKNRGWASSSGE-WKGKKNRPPRSP 1551
S + P + G + WG +E W + G+ W N P
Sbjct: 716 SGSYGRGNAPAVSSPCQEGPKPMQDGWGSGGEEMGMNTSQWNADDGDMW----NSP---- 767
Query: 1552 GVVNDDSTVNAMYTVTRQRLDMFTSEEQDILSDVEPIMRSIRRI 1595
+ DST N+ + + S +QD DV + R I+++
Sbjct: 768 --TSQDSTCNSWGHSRKGPQRVKVSNKQD---DVWIMNRLIKQL 806
>UNIPROTKB|J9NUK0 [details] [associations]
symbol:TNRC6C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0031047 SUPFAM:SSF46934 GeneTree:ENSGT00410000025966
InterPro:IPR019486 InterPro:IPR026805 PANTHER:PTHR31070
Pfam:PF10427 Pfam:PF12938 EMBL:AAEX03006251 EMBL:AAEX03006252
Ensembl:ENSCAFT00000050041 Uniprot:J9NUK0
Length = 1685
Score = 154 (59.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 96/391 (24%), Positives = 149/391 (38%)
Query: 1148 LVEDQSWLENK-QENANWDSEADCR--KSSEDKWEKLGTSLEKPS----SGWRTEG-AWG 1199
++ + W + ++N W+ E R + +++ E G + +PS SGW + A G
Sbjct: 465 VLSNTGWGQTPVKQNTAWEFEESPRSERKNDNGTEAWGCAATQPSNSGVSGWASAPPAAG 524
Query: 1200 KSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEW-GTEASWGKSFG 1258
++ S ++ P+G G WG+S N + A+KS W GT KS
Sbjct: 525 PANTGW---GDSSNKAPNGPGV---WGDSISSTAVNNAAAASKSGHAWSGTVNQEDKS-- 576
Query: 1259 DKPENVSPAAKTSSGWG----SEASWGKSSGDRQEN---VG--GSASKPLSGWGAKASWG 1309
P P S WG S +W GD ++ +G G K SGW A ++
Sbjct: 577 --PTWGEPQKPKSQNWGDGQKSNPAWSAGGGDWTDSSSVLGHLGDGKKNGSGWDADSNRS 634
Query: 1310 KSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSS 1369
S + T S WG T KV NP + WG E+ G
Sbjct: 635 GSGWNDATRSGT------SGWGNG---------TNAKV-----NPGTNWG-ESLKPGPQQ 673
Query: 1370 DWSEWKDHANATASWGRNGS--EENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGARE 1427
+W+ K N ++WG S + +GW K D + G + S+ E
Sbjct: 674 NWAG-KPQDNNVSNWGGAASVKQTGTGW-IGGPVPVKQKDSSEATGWEEPSPPSIRRKME 731
Query: 1428 -DFSTKGWEDSSKPSANEKSIV-----HQIGG----WN-VPDAKGTDDSCWGKQKLTENA 1476
D T W D S + N K++ + +GG W +P+ +S WG+
Sbjct: 732 IDDGTSAWGDPS--NYNNKTVNMWDRNNPVGGVSAGWGEMPNVHSKAESSWGEPSSPSAL 789
Query: 1477 KGTDDSSWGKQKHTENESPQPASSNAW-DLP 1506
++WGK P P+S + W D P
Sbjct: 790 VDNGTAAWGK--------P-PSSGSGWGDQP 811
>UNIPROTKB|Q8NDV7 [details] [associations]
symbol:TNRC6A "Trinucleotide repeat-containing gene 6A
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0035068 "micro-ribonucleoprotein complex" evidence=IDA]
[GO:0035278 "negative regulation of translation involved in gene
silencing by miRNA" evidence=IDA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0007219 "Notch signaling pathway" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0010467
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007219 GO:GO:0003723
GO:GO:0009267 GO:GO:0000932 GO:GO:0035068 GO:GO:0035278
SUPFAM:SSF46934 InterPro:IPR019486 PANTHER:PTHR31070 Pfam:PF10427
EMBL:AC008731 EMBL:AY035864 EMBL:AJ492221 EMBL:AL713750
EMBL:AL833757 EMBL:AC002565 EMBL:BC024324 EMBL:BC068209 EMBL:U80739
EMBL:AB040893 EMBL:AK001773 IPI:IPI00160265 IPI:IPI00382618
IPI:IPI00395878 IPI:IPI00554606 IPI:IPI00554721 IPI:IPI00853634
RefSeq:NP_055309.2 UniGene:Hs.655057 ProteinModelPortal:Q8NDV7
SMR:Q8NDV7 IntAct:Q8NDV7 STRING:Q8NDV7 PhosphoSite:Q8NDV7
DMDM:296452846 PaxDb:Q8NDV7 PRIDE:Q8NDV7 Ensembl:ENST00000315183
Ensembl:ENST00000395799 GeneID:27327 KEGG:hsa:27327 UCSC:uc002dmm.3
UCSC:uc002dmn.3 UCSC:uc002dmp.3 UCSC:uc002dmr.3 UCSC:uc010vcc.1
CTD:27327 GeneCards:GC16P024741 H-InvDB:HIX0012904
H-InvDB:HIX0173209 HGNC:HGNC:11969 HPA:HPA015305 HPA:HPA017869
MIM:610739 neXtProt:NX_Q8NDV7 PharmGKB:PA36656 eggNOG:NOG318066
HOVERGEN:HBG062594 InParanoid:Q8NDV7 OMA:TQTFNSG ChiTaRS:TNRC6A
GenomeRNAi:27327 NextBio:50354 ArrayExpress:Q8NDV7 Bgee:Q8NDV7
Genevestigator:Q8NDV7 GermOnline:ENSG00000090905 Uniprot:Q8NDV7
Length = 1962
Score = 163 (62.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 113/459 (24%), Positives = 173/459 (37%)
Query: 1139 CSDK--PVFEDLVEDQSWLENKQENANW-DSE-ADCRKSSEDKWEKLGTSLEKPSSGW-- 1192
C DK P D W + K W DS+ ++C+ ED + T + K S+ W
Sbjct: 766 CIDKTSPNGNDTSSVSGWGDPKPA-LRWGDSKGSNCQGGWED--DSAATGMVK-SNQWGN 821
Query: 1193 --RTEGAWGKSSDDKLEKAGSPSRKPSGWGTEAS--WGESSCDK-WENV-------GSPA 1240
+ AW S +K + G + GW AS WGE+S + W GS +
Sbjct: 822 CKEEKAAWNDSQKNK-QGWGDGQKSSQGWSVSASDNWGETSRNNHWGEANKKSSSGGSDS 880
Query: 1241 AKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEAS------WGKSSGDRQENVGGS 1294
+S S W E SF N++P SSGW + WG Q G
Sbjct: 881 DRSVSGWN-ELGKTSSF-TWGNNINP--NNSSGWDESSKPTPSQGWGDPPKSNQSLGWGD 936
Query: 1295 ASKPLSGWGAKASWGKSSEDKLEE--VETTVAKPSSAWGTEASWDKSSEVTLEKVAAPA- 1351
+SKP+S W K +D + + KP GT W + APA
Sbjct: 937 SSKPVSS----PDWNKQ-QDIVGSWGIPPATGKPP---GT--GWLGGP------IPAPAK 980
Query: 1352 ENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEEN----SGWDTKASWKTKALD 1407
E +GW + +S + E D T++WG + S+ N + W+ D
Sbjct: 981 EEEPTGWEEPSPESIRRK--MEIDD---GTSAWG-DPSKYNYKNVNMWNKNVPNGNSRSD 1034
Query: 1408 KLDDVGSAVENSSSVWGAREDFSTKGW-EDSSKPSANEKSIVHQIGGWNVPDAKGTDDSC 1466
+ V + +S++ +E S GW E +PS ++ + W P G
Sbjct: 1035 QQAQVHQLLTPASAI-SNKEASSGSGWGEPWGEPSTPATTVDNGTSAWGKPIDSGPS--- 1090
Query: 1467 WGKQKLTENAKGT-DDSSWGKQKHTENESPQPASSNAW---DLP----DATGGSE---TE 1515
WG+ ++ T SS G Q +++ P+ + + W D+P TG E E
Sbjct: 1091 WGEPIAAASSTSTWGSSSVGPQALSKS-GPK-SMQDGWCGDDMPLPGNRPTGWEEEEDVE 1148
Query: 1516 MQVWGQSRKEPFKKNRGWAS-----SSGEWKGKKNRPPR 1549
+ +W + + + W SS GKK R R
Sbjct: 1149 IGMWNSNSSQELNSSLNWPPYTKKMSSKGLSGKKRRRER 1187
Score = 150 (57.9 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 93/380 (24%), Positives = 142/380 (37%)
Query: 1211 SPSRKPSGWGTEAS-WGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAK 1269
+P ++ + W TE S GE D G+ A WG+ A+ + G + SP
Sbjct: 726 TPIKQNTAWDTETSPRGERKTDN----GTEA------WGSSATQTFNSGACIDKTSPNGN 775
Query: 1270 -TSS--GWGSEAS---WGKSSGDR-----QENVGGSASKPLSGWG----AKASWGKSSED 1314
TSS GWG WG S G +++ + + WG KA+W S ++
Sbjct: 776 DTSSVSGWGDPKPALRWGDSKGSNCQGGWEDDSAATGMVKSNQWGNCKEEKAAWNDSQKN 835
Query: 1315 KLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKS-SDWSE 1373
K + K S W AS D E + A S G+ DS +S S W+E
Sbjct: 836 KQGWGDGQ--KSSQGWSVSAS-DNWGETSRNNHWGEANKKSSSGGS---DSDRSVSGWNE 889
Query: 1374 WKDHANATASWGRNGSEENS-GWDTKAS------W--KTKALDKLDDVGSAVENSSSVWG 1424
++ T WG N + NS GWD + W K+ L S+ SS W
Sbjct: 890 LGKTSSFT--WGNNINPNNSSGWDESSKPTPSQGWGDPPKSNQSLGWGDSSKPVSSPDWN 947
Query: 1425 AREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGT---DD 1481
++D W P+ + +GG AK + + W ++ E+ + DD
Sbjct: 948 KQQDI-VGSW--GIPPATGKPPGTGWLGGPIPAPAKEEEPTGW-EEPSPESIRRKMEIDD 1003
Query: 1482 --SSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGE 1539
S+WG ++ N W+ G S ++ Q P +SSG
Sbjct: 1004 GTSAWGDPSKYNYKNV-----NMWNKNVPNGNSRSDQQAQVHQLLTPASAISNKEASSGS 1058
Query: 1540 WKGKKNRPPRSPGVVNDDST 1559
G+ P +P D+ T
Sbjct: 1059 GWGEPWGEPSTPATTVDNGT 1078
Score = 146 (56.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 93/397 (23%), Positives = 159/397 (40%)
Query: 1190 SGWRTEGAWGKSSDDKLEKA-GSPS-RKPSGWGTEASWGESSCDKWENVGSPAAKSFSEW 1247
SG + G G+++ D + P P G + + + WE+ G+ ++S S W
Sbjct: 530 SGDKCSGPNGQANGDTVNATLMQPGVNGPMGTNFQVNTNKGG-GVWES-GAANSQSTS-W 586
Query: 1248 GTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQEN--VGGSASKPLSGWGAK 1305
G+ + S G + +PA T + S W K ++ N G+ +GW
Sbjct: 587 GS-GNGANSGGSRRGWGTPAQNTGTNLPS-VEWNKLPSNQHSNDSANGNGKTFTNGW--- 641
Query: 1306 ASWGKSSEDKLEEVETTVA-KPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWG-TEAQ 1363
KS+E++ + T+ + SS W +S T E E G G ++++
Sbjct: 642 ----KSTEEEDQGSATSQTNEQSSVWAKTGGTVESDGST-ESTGRLEEK---GTGESQSR 693
Query: 1364 DSGKSSDWSEWKDHANAT---------ASWGRNGSEENSGWDTKASWKTKALDKLDDVGS 1414
D K + + N T + WG+ ++N+ WDT+ S + + K D
Sbjct: 694 DRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGER--KTD---- 747
Query: 1415 AVENSSSVWG--AREDFSTKGWEDSSKPSANEKSIVHQIGGWNVP-------DAKGTDDS 1465
N + WG A + F++ D + P+ N+ S + GW P D+KG++
Sbjct: 748 ---NGTEAWGSSATQTFNSGACIDKTSPNGNDTS---SVSGWGDPKPALRWGDSKGSN-- 799
Query: 1466 CWGKQKLTENAKGTDDSS-WG---KQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQ 1521
C G + A G S+ WG ++K N+S + + W G + Q W
Sbjct: 800 CQGGWEDDSAATGMVKSNQWGNCKEEKAAWNDSQK--NKQGW------GDGQKSSQGWSV 851
Query: 1522 SRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDS 1558
S + N G S + W G+ N+ S G +D S
Sbjct: 852 SASD----NWGETSRNNHW-GEANKKSSSGGSDSDRS 883
Score = 48 (22.0 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 1519 WGQSRKEPFKKNRGWASS--SGE-WKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLD 1572
W +++ + W GE WKG N P + V S +N + T + +D
Sbjct: 1594 WPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINNLSINTVREVD 1650
>UNIPROTKB|P0A8T7 [details] [associations]
symbol:rpoC "RNA polymerase, beta' subunit" species:83333
"Escherichia coli K-12" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005737 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351 EMBL:U00006
Gene3D:2.40.40.20 InterPro:IPR009010 PDB:3IYD PDBsum:3IYD
GO:GO:0003899 EMBL:V00339 eggNOG:COG0086 PDB:3LU0 PDBsum:3LU0
EMBL:V00340 EMBL:M38293 EMBL:M38303 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 EMBL:M38305
EMBL:M38288 PIR:A00695 RefSeq:NP_418415.1 RefSeq:YP_491473.1
PDB:2AUK PDB:2LMC PDBsum:2AUK PDBsum:2LMC ProteinModelPortal:P0A8T7
SMR:P0A8T7 DIP:DIP-35803N IntAct:P0A8T7 MINT:MINT-1220667
PhosSite:P010445 PaxDb:P0A8T7 PRIDE:P0A8T7
EnsemblBacteria:EBESCT00000001546 EnsemblBacteria:EBESCT00000001547
EnsemblBacteria:EBESCT00000001548 EnsemblBacteria:EBESCT00000018189
GeneID:12933965 GeneID:948487 KEGG:ecj:Y75_p3209 KEGG:eco:b3988
PATRIC:32123497 EchoBASE:EB0888 EcoGene:EG10895
BioCyc:EcoCyc:RPOC-MONOMER BioCyc:ECOL316407:JW3951-MONOMER
BioCyc:MetaCyc:RPOC-MONOMER EvolutionaryTrace:P0A8T7
Genevestigator:P0A8T7 Uniprot:P0A8T7
Length = 1407
Score = 170 (64.9 bits), Expect = 2.8e-06, Sum P(4) = 2.8e-06
Identities = 92/365 (25%), Positives = 155/365 (42%)
Query: 89 ELKLTMYAFQLQIKNDGVAQRLLSSCCEVKEMLKRIPEET-RKKLAGK----GYFPQDG- 142
+ K+ A Q +K+ + Q C +++E L ET RKKL + F Q G
Sbjct: 177 DAKMGAEAIQALLKSMDLEQE----CEQLREELNETNSETKRKKLTKRIKLLEAFVQSGN 232
Query: 143 ----YILEYLPV-PPNCLSVPDISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFE 197
IL LPV PP+ + + DG +SDL+ + + + + R P+
Sbjct: 233 KPEWMILTVLPVLPPDLRPLVPL-DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII 291
Query: 198 SQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQDPNSTTKAWLE----KMRTLFIR 253
+ E LQ AV L+ + R + G ++ P + ++ + R +
Sbjct: 292 VRN-EKRMLQEAVDALLD---NGRRGRAIT---GSNKRPLKSLADMIKGKQGRFRQNLLG 344
Query: 254 KGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSD 313
K +S RSVIT Y R+++ G+P ++A + F+ + Y +L L T
Sbjct: 345 KRVDYSGRSVITVGPYLRLHQCGLPKKMALEL-FKPFI------Y-GKLELRGLATTIKA 396
Query: 314 GSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVK 373
RE + L +V+ V +NR PT H+ +QA + + ++
Sbjct: 397 AKKMVE-REEAVVWDIL--DEVIREH-----PVLLNRAPTLHRLGIQAFEPVLIEGKAIQ 448
Query: 374 INPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALL 433
++PL+C +ADFDGD + + P +L A+ E L +LS NG + + D +L
Sbjct: 449 LHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL 508
Query: 434 SLKVM 438
L M
Sbjct: 509 GLYYM 513
Score = 49 (22.3 bits), Expect = 2.8e-06, Sum P(4) = 2.8e-06
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 724 LRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNP 776
+R VV C D T VC++ Y + + H + GE +GV+AA ++ P
Sbjct: 882 VRSVVSC-D-TDFGVCAHC-----YGRDLARGH-IINKGEAIGVIAAQSIGEP 926
Score = 48 (22.0 bits), Expect = 2.8e-06, Sum P(4) = 2.8e-06
Identities = 53/228 (23%), Positives = 87/228 (38%)
Query: 1386 RNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWG---AREDFSTKGWE-----DS 1437
+ E+ +G +T A+W + + +V V + + G R+ G DS
Sbjct: 1005 KGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDS 1064
Query: 1438 SKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTEN---AKGTDDSSWGKQKHTENES 1494
++ +A K + + + DA+G D G + K G Q + +
Sbjct: 1065 AERTAGGKDLRPAL---KIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTL 1121
Query: 1495 PQ-PASSNAWDLPDATGGSETEMQVWGQSR-KEP--FKKNRGWASSSGEWKGKKNRPPRS 1550
+ P S D TGG ++ R KEP + G S E KGK+ R +
Sbjct: 1122 ARIPQESGG--TKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKR-RLVIT 1178
Query: 1551 PGVVNDDSTVNAMYTVTRQRLDMFTSE--EQ-DILSDVEPIMRSIRRI 1595
P V+ M RQ L++F E E+ D++SD I R+
Sbjct: 1179 P--VDGSDPYEEMIPKWRQ-LNVFEGERVERGDVISDGPEAPHDILRL 1223
Score = 45 (20.9 bits), Expect = 2.1e-05, Sum P(5) = 2.1e-05
Identities = 14/65 (21%), Positives = 30/65 (46%)
Query: 683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYD--GTVRNVCS 740
F GL+ + + R+ + ++ + G L + L+ V +D+V+ D GT +
Sbjct: 763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMM 822
Query: 741 NSIIQ 745
+I+
Sbjct: 823 TPVIE 827
Score = 39 (18.8 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 686 GLDPYEEM 693
G DPYEEM
Sbjct: 1182 GSDPYEEM 1189
Score = 39 (18.8 bits), Expect = 7.8e-05, Sum P(5) = 7.8e-05
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 851 EFLIEYKKPEIISDDEGLVGHI 872
+ +I KK EIIS+ E V I
Sbjct: 643 DMVIPEKKHEIISEAEAEVAEI 664
Score = 38 (18.4 bits), Expect = 2.1e-05, Sum P(5) = 2.1e-05
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 1231 DKWENVGSPAAKSFSEWGTE 1250
+K E +G AA+S E GT+
Sbjct: 910 NKGEAIGVIAAQSIGEPGTQ 929
Score = 37 (18.1 bits), Expect = 2.8e-06, Sum P(4) = 2.8e-06
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 571 KEIQALYSLLYHRMSTQNELVDLQIENHIRHVK-MLVAKFILKSSTLGYLI 620
KE + LY +++ + V ++I + + LVAK LK +T+G I
Sbjct: 531 KEAERLYR---SGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAI 578
Score = 37 (18.1 bits), Expect = 2.1e-05, Sum P(5) = 2.1e-05
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 555 SLEDFSLSKAALWNI 569
SL+D ++ +A LW I
Sbjct: 568 SLKDTTVGRAILWMI 582
>UNIPROTKB|E1BQG1 [details] [associations]
symbol:TNRC6B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 OMA:NETGRQP EMBL:AADN02006085 EMBL:AADN02006086
IPI:IPI00600394 Ensembl:ENSGALT00000019682 Uniprot:E1BQG1
Length = 1715
Score = 180 (68.4 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 104/443 (23%), Positives = 179/443 (40%)
Query: 1153 SWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGK--SSDD-KLEKA 1209
SW N + + ++E KW + G L +SG ++G W + SD+ K+ +
Sbjct: 472 SWDNNNRSTGGGSWNFGPQHANESKWGE-GNKL---TSGV-SQGEWKQLSGSDELKIGEW 526
Query: 1210 GSPSRKPSGWGTEASWGESSCDKW-ENVGSPAAKSFSEWG-TEASWGKSFGDKPENVSPA 1267
P++ S G +W EN G+ A WG + +S G G + +
Sbjct: 527 SGPNQPNSSTG---AWDNQKGHPLPENQGNSQAPC---WGRSSSSAGSEVGGQSTGSNHK 580
Query: 1268 AKTSSGWGS-EASWGKSSGDRQENVGGSASKP-LSGWG-AKASWGKSS--EDKLEEVETT 1322
A +S S S+ + D Q + S+ L + WG++ +D + ++E
Sbjct: 581 AGSSDSHNSGRRSYRPTHPDCQAVLQTLLSRTDLDPRVLSNTGWGQTQIKQDTVWDIEEM 640
Query: 1323 V-AKPSSAWGTEASWDKSSEVTLEKVA---APAE-NPL-SGWG-----TEAQDSGKSSDW 1371
++ S GTE W+ S+ T P++ N + SGWG TE +D + W
Sbjct: 641 PRSEGKSDKGTEG-WESSATQTKNSGGWGDVPSQSNQIKSGWGELSTPTEWKDPKNTGGW 699
Query: 1372 SEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVG-SAVENSSSVWGAREDFS 1430
+++K+ ++ GR + +S W+ +S + + G S+ +N WG D +
Sbjct: 700 NDYKNPNSSNWGGGRQEEKSSSSWNDSSSKDQGWGGRQPNQGWSSGKNG---WGEEVDQA 756
Query: 1431 -TKGWEDS-SKPSAN-EKSIVHQIGGW----NVPDA-KGTDDSCWGKQKLTENAKGTDDS 1482
WE + +KP++ + ++IG W N A KG D C K+ T N G +
Sbjct: 757 KNSNWESAGNKPASGWGEGGQNEIGTWGNGANTGSASKGGWDDC--KRNSTWNETGRQPN 814
Query: 1483 SWGKQKHTENESPQPASSNAWDLPDAT-GGSETEMQVWGQSRKEPFKKNR---GWASSSG 1538
SW KQ+ + + Q +S +W P T W + K+ GW S
Sbjct: 815 SWNKQQQQQQQQQQE-TSGSWGPPPQTPSNGRPPNPNWNSGPQPAAPKDEEPSGWEEPSP 873
Query: 1539 EWKGKKNRPPRSPGVVNDDSTVN 1561
+ +K D S+ N
Sbjct: 874 QSISRKMDIDDGTSAWGDPSSYN 896
Score = 42 (19.8 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 16/66 (24%), Positives = 27/66 (40%)
Query: 235 DPNSTTKAWLEKMRTLFIRKG-----SGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEE 289
+PNS AW ++ RKG SG S+ + T R + + ++ E
Sbjct: 304 NPNSNPSAWPALVQEGNSRKGTSESDSGSSNAQISTVGQTSREQQSKMENAGVNFVSGRE 363
Query: 290 RVNVHN 295
+ +HN
Sbjct: 364 QAQIHN 369
Score = 38 (18.4 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 1540 WKGKKNRPPRSPGVVNDDSTVNAMYT 1565
WKG +N P S V S + T
Sbjct: 1368 WKGIQNIDPESDPYVTPGSVLGGTAT 1393
>UNIPROTKB|G4MVJ0 [details] [associations]
symbol:MGG_08881 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:CM001232
RefSeq:XP_003713906.1 EnsemblFungi:MGG_08881T0 GeneID:2679867
KEGG:mgr:MGG_08881 Uniprot:G4MVJ0
Length = 995
Score = 153 (58.9 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 84/355 (23%), Positives = 129/355 (36%)
Query: 1232 KWENVGSPAAKSFSEWGT-EASWGKSFGDKPENVSPAAKTS---SG-----WGSEASWGK 1282
K+++ G P K S+ + W + P P ++ S SG W ++A WG
Sbjct: 464 KFDSHGRPITKGSSKGSNKDQGWATNVAPPPPTAGPGSQRSQQASGPNKDPWKTDA-WG- 521
Query: 1283 SSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKP-SSAWGTEASWDKSSE 1341
S+ + G +K S G +++ G D + T +P SA G ++ ++
Sbjct: 522 SNVPWGDGASGENAKESSHQGRRSNRG----DNVWGGNTGAPQPWGSANGGSNGSNRQND 577
Query: 1342 VTLEKVAAPAENPLS--GWGTEAQD-SGKSSDWSEWKDHANATAS---W-GRNGSEENSG 1394
+ + AA A N GWG + S K S W H+ W N N G
Sbjct: 578 NSGAQWAADANNNTGSKGWGGGGSNVSKKESALPGWPSHSPKCPPQNPWVSSNSGPNNQG 637
Query: 1395 W-DTKASWKTKALDKLDDVGS--AVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQI 1451
W D G A N+ + WG + GW + K ++ S ++
Sbjct: 638 SAGVNGGWNDPQPRTTGDWGGGGAPANNWNAWGTGSQTNNFGWNEPPKNTSERAS--NE- 694
Query: 1452 GGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESP---QPASSNAWDLPDA 1508
GWNV G + WG N D G SP Q A N W +A
Sbjct: 695 -GWNVKP-NGNSNMAWGGGGSQRNDPAPDVPVDGPSDTRPQGSPPANQEAGRNDWS--NA 750
Query: 1509 TGGSETEMQVWGQSRKEPFKKNR-GWASSSGE--W-KG--KKNRPPRSPGVVNDD 1557
+ G T + G + N G + G W +G K PPR P + +++
Sbjct: 751 SPGGPTSWEQGGGGANSNWSYNNVGGPPNDGGGGWGRGGSTKGTPPRPPSIPDNE 805
Score = 48 (22.0 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 28/105 (26%), Positives = 45/105 (42%)
Query: 760 PAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWELMK-EIL--LCRVSFNNDPIDRRVIL 816
P G+ V +A+ + + SS SS +S E K E C S ++ +
Sbjct: 63 PPGKKVRFDQKSALKDSSSPISPSSSSSSGSSEEKPKIEATKSTCEPSDSDGDSEPHPTC 122
Query: 817 YLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEFLIEYKKPEI 861
DC GR+ + R A + K L+ SL DA+ + E +P +
Sbjct: 123 SCTDCRAGRRRAR-RLARLNKKLLE--SLSDASSD-TTEASEPVV 163
>FB|FBgn0036203 [details] [associations]
symbol:Muc68D "Mucin 68D" species:7227 "Drosophila
melanogaster" [GO:0016490 "structural constituent of peritrophic
membrane" evidence=ISS] [GO:0005576 "extracellular region"
evidence=IEA] [GO:0008061 "chitin binding" evidence=IEA]
[GO:0006030 "chitin metabolic process" evidence=IEA] [GO:0031012
"extracellular matrix" evidence=ISM] [GO:0005201 "extracellular
matrix structural constituent" evidence=ISM] InterPro:IPR002557
Pfam:PF01607 PROSITE:PS50940 SMART:SM00494 GO:GO:0005576
EMBL:AE014296 eggNOG:NOG12793 GO:GO:0031012 GO:GO:0008061
GO:GO:0005201 CAZy:CBM14 Gene3D:2.170.140.10 SUPFAM:SSF57625
GO:GO:0006030 GeneTree:ENSGT00700000104174 EMBL:AY075323
RefSeq:NP_648504.2 UniGene:Dm.20068 SMR:Q9VTN2 MINT:MINT-900668
STRING:Q9VTN2 EnsemblMetazoa:FBtr0076119 GeneID:39326
KEGG:dme:Dmel_CG6004 UCSC:CG6004-RB CTD:39326 FlyBase:FBgn0036203
InParanoid:Q9VTN2 OMA:STESSQD OrthoDB:EOG4WSTSF GenomeRNAi:39326
NextBio:813085 Uniprot:Q9VTN2
Length = 1514
Score = 149 (57.5 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 96/417 (23%), Positives = 173/417 (41%)
Query: 1127 EFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENANWDSEADCRKSSEDKW-EKLGTSL 1185
E + S S E + S ED E+ E N E+ +SS+D ++ +S
Sbjct: 559 EANESSSTESSQDSTTQESSSSTEDPLSTESSTEATN---ESSSTESSQDSTTQESSSST 615
Query: 1186 EKP-SSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWG-ESSCDKWENVGSPAAKS 1243
E P S+ TEG+ SS + + S ++K S TE+ E S + E S + +S
Sbjct: 616 EGPLSTESSTEGSNESSSTESSQD--STTQKSSS-STESPLSTEPSTEANE---SSSTES 669
Query: 1244 FSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWG 1303
+ T+ S + G P + P+ + + +E+S ++ + + G S S
Sbjct: 670 SQDSTTQESSSSTEG--PLSTEPSTEANESSSTESSQDSTTQESSSSSEGPLSTESSTEA 727
Query: 1304 AKASWGKSSEDKL-EEVETTVAKP-SSAWGTEA----SWDKSSEVTLEKVAAPAENPLSG 1357
++S +SS+D +E ++ P S+ TEA S + S + T ++ ++ E PLS
Sbjct: 728 NESSSTESSQDSTTQESSSSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEGPLST 787
Query: 1358 W-GTEAQDSGKSSDWSEWKDHANATASWG----RNGSEENSGWDTKASWKTKALDKLDDV 1412
TEA +S + + ++++S G + +E N T++S + +
Sbjct: 788 EPSTEANESSSTESSQDSTTQESSSSSEGPLSTESSTEANESSSTESSQDSTTQESSSST 847
Query: 1413 GSAVENSSSVWGAREDFSTKGWEDSS---KPSANEKSIVHQIGGWNVPDAKGTDDSCWGK 1469
+ SS E ST+ +DS+ S+ E + + ++ T+ S +
Sbjct: 848 EDPLSTESSTEATYESSSTESSQDSTTQESSSSTEGPLSTESSTEGSNESSSTESS---Q 904
Query: 1470 QKLTENAKGTDDSSWGKQKHTE-NESPQPASSNAWDLPDATGGSETEMQVWGQSRKE 1525
T+ + + +S + TE NES SS D S TE + +S E
Sbjct: 905 DSTTQESSSSTESPLSTEPSTEANESSSTESSQ--DSTTQESSSSTEGPLSTESSTE 959
Score = 141 (54.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 74/398 (18%), Positives = 150/398 (37%)
Query: 1187 KPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGW--GTEASWGESSCDKWENVGSPAAKSF 1244
+PS+G + + +S D +++ S S P + TEA+ SS + N + + S
Sbjct: 284 EPSTGATDDSSSTESLPDSTQESSSSSESPVSFELSTEATNESSSSESLPNSSTQDSSSS 343
Query: 1245 SEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGA 1304
+E + D+ + +++ S ++ G S + V +S S +
Sbjct: 344 TETSFQTESTTDATDESSSTESQPDSTTQESSSSTEGPLSTESSTAVTDQSSSTESSQDS 403
Query: 1305 KASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQD 1364
SS + E++ + + TE+S D +++ + P S T
Sbjct: 404 TTQESSSSTEGPLSTESSTEATNESSSTESSQDSTTQESSSSTEGPLSTESSTEATNESS 463
Query: 1365 SGKSSDWSEWKDHANATAS-WGRNGSEE--NSGWDTKASWKTKALDKLDDVGSAVENSSS 1421
S +SS S ++ +++T S E N T++S + + + SS
Sbjct: 464 STESSQDSTTQESSSSTEGPLSTESSTEATNESSSTESSQDSTTQESSSSSEGPLSTESS 523
Query: 1422 VWGAREDFSTKGWEDSS--KPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGT 1479
E ST+ +DS+ + S++ +S + ++ T+ S + T+ + +
Sbjct: 524 TEATNESSSTESSQDSTTQESSSSTESPLSTEPSTEANESSSTESS---QDSTTQESSSS 580
Query: 1480 DDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGE 1539
+ + TE + ++ ++ D S TE + +S E ++ SS
Sbjct: 581 TEDPLSTESSTEATNESSSTESSQDSTTQESSSSTEGPLSTESSTEGSNESSSTESSQDS 640
Query: 1540 WKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLDMFTSE 1577
K + SP + + ST + T D T E
Sbjct: 641 TTQKSSSSTESP-LSTEPSTEANESSSTESSQDSTTQE 677
Score = 138 (53.6 bits), Expect = 0.00010, P = 0.00010
Identities = 95/422 (22%), Positives = 170/422 (40%)
Query: 1160 ENANWDSEADCRKSSEDKW-EKLGTSLEKP-SSGWRTEGAWGKSSDDKLEKAGSPSRKPS 1217
E++ +E+ +SS+D ++ +S E P S+ TE + SS E + + + S
Sbjct: 821 ESSTEANESSSTESSQDSTTQESSSSTEDPLSTESSTEATYESSST---ESSQDSTTQES 877
Query: 1218 GWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSE 1277
TE S + N S S E+S S + P + P+ + + +E
Sbjct: 878 SSSTEGPLSTESSTEGSNESSSTESSQDSTTQESS---SSTESPLSTEPSTEANESSSTE 934
Query: 1278 ASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKL-EEVETTVAKP-SSAWGTEAS 1335
+S ++ + + G S S ++S +SS+D +E ++ P S+ TE S
Sbjct: 935 SSQDSTTQESSSSTEGPLSTESSTEANESSSTESSQDSTTQESSSSTEGPLSTESSTEGS 994
Query: 1336 WDKSS-----EVTLEKVAAPAENPLSGW-GTEAQDSGKSSDWSEWKDHANATASWGRNGS 1389
+ SS + T ++ ++ E+PLS TEA +S + + +++++ G +
Sbjct: 995 NESSSTESSQDSTTQESSSSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEGPLST 1054
Query: 1390 EENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVH 1449
E + T+AS ++ + + D + E+SSS G S+ E + +PS E
Sbjct: 1055 ESS----TEASNESSSTESSQD-STTQESSSSTEGPLSTESST--EVTQEPSPTESLPNS 1107
Query: 1450 QIGGW----NVPDAKGTDDSCWGKQKLTENA--KGTDDSSWGKQKHTENESPQPASSNAW 1503
G + P + S G + N+ + + S+ G T+N S +SS+
Sbjct: 1108 STQGTPCTTDNPSSLEPSPSTPGNDDDSGNSGSENGNSSTSGSPCTTDNPSDPESSSSTP 1167
Query: 1504 DLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDSTVNAM 1563
D +G S +E S N SS G + S ST A
Sbjct: 1168 GNDDDSGNSGSENGNSSTSGSPCTTDNPSDPESSSSTPGNDDDSGNSGSESGITSTTGAP 1227
Query: 1564 YT 1565
YT
Sbjct: 1228 YT 1229
Score = 132 (51.5 bits), Expect = 0.00046, P = 0.00046
Identities = 106/476 (22%), Positives = 192/476 (40%)
Query: 1117 LGEEVDGLEDEFDWSLSPEHNLCSDKPVFED----LVEDQSWLEN-----KQENANWDSE 1167
+G +V+ L E +SL E + S+ PV + +D S E+ ++ +++ +S
Sbjct: 254 IGSKVESLLIEALYSLIQESSSSSESPVSNEPSTGATDDSSSTESLPDSTQESSSSSESP 313
Query: 1168 ADCRKSSE-----DKWEKLGTSLEKPSSGWRTEGAWG-KSSDDKLEKAGSPSRKPSGWGT 1221
S+E E L S + SS TE ++ +S+ D +++ S +P
Sbjct: 314 VSFELSTEATNESSSSESLPNSSTQDSSS-STETSFQTESTTDATDESSSTESQPDSTTQ 372
Query: 1222 EASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGS--EAS 1279
E+S SS + + S A + TE+S + + + T S + E+S
Sbjct: 373 ESS---SSTEGPLSTESSTAVTDQSSSTESSQDSTTQESSSSTEGPLSTESSTEATNESS 429
Query: 1280 WGKSSGDRQENVGGSASK-PLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDK 1338
+SS D S+++ PLS + + +SS + + TT SS G S +
Sbjct: 430 STESSQDSTTQESSSSTEGPLSTESSTEATNESSSTESSQDSTTQESSSSTEGP-LSTES 488
Query: 1339 SSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTK 1398
S+E T E ++ E S + Q+S SS+ + ++T + + S E+S T
Sbjct: 489 STEATNE--SSSTE---SSQDSTTQESSSSSEGPLSTE--SSTEATNESSSTESSQDSTT 541
Query: 1399 ASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSK-PSANEKSIVHQIGGWNVP 1457
+ L S N SS + +D +T+ S++ P + E S + +
Sbjct: 542 QESSSSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEDPLSTESST--EATNESSS 599
Query: 1458 DAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPA----SSNAWDLPDATGGSE 1513
D + TE T+ S+ G + + ES Q + SS++ + P +T S
Sbjct: 600 TESSQDSTTQESSSSTEGPLSTESSTEGSNESSSTESSQDSTTQKSSSSTESPLSTEPS- 658
Query: 1514 TEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDSTVNAMYTVTRQ 1569
TE +S ++ SS +G + P + N+ S+ + T Q
Sbjct: 659 TEAN---ESSSTESSQDSTTQESSSSTEGPLSTEPSTEA--NESSSTESSQDSTTQ 709
Score = 129 (50.5 bits), Expect = 0.00095, P = 0.00095
Identities = 106/412 (25%), Positives = 161/412 (39%)
Query: 1146 EDLVEDQSWLENKQENANWDSEADC--RKSSEDKWEKLGT--SLEKPSSGWRTEGAWGKS 1201
E + +S E E+++ +S D ++SS L T S E S TE + +
Sbjct: 882 EGPLSTESSTEGSNESSSTESSQDSTTQESSSSTESPLSTEPSTEANESS-STESSQDST 940
Query: 1202 SDDKLEKAGSP-SRKPSGWGTEASWGESSCDKWENVGS-----P-AAKSFSEWGTEASWG 1254
+ + P S + S E+S ESS D S P + +S +E E+S
Sbjct: 941 TQESSSSTEGPLSTESSTEANESSSTESSQDSTTQESSSSTEGPLSTESSTEGSNESSST 1000
Query: 1255 KSFGDKP------ENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASK-PLSGWGAKAS 1307
+S D SP + S +E+S +SS D S+++ PLS + +
Sbjct: 1001 ESSQDSTTQESSSSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEGPLSTESSTEA 1060
Query: 1308 WGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAEN-PLSGW-GTEAQDS 1365
+SS + + TT SS G S + S+EVT E +P E+ P S GT
Sbjct: 1061 SNESSSTESSQDSTTQESSSSTEGP-LSTESSTEVTQEP--SPTESLPNSSTQGTPCTTD 1117
Query: 1366 GKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGA 1425
SS N S G +GSE N T S T D S E+SSS G
Sbjct: 1118 NPSSLEPSPSTPGNDDDS-GNSGSE-NGNSSTSGSPCTT------DNPSDPESSSSTPGN 1169
Query: 1426 REDFSTKGWED-SSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSW 1484
+D G E+ +S S + + + + G DD G ++ S+
Sbjct: 1170 DDDSGNSGSENGNSSTSGSPCTTDNPSDPESSSSTPGNDDDS-GNS----GSESGITSTT 1224
Query: 1485 GKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASS 1536
G T+N + Q S +A + P +G S +E G + P + SS
Sbjct: 1225 GAPYTTDNPASQEPSPSAPENPGDSGNSSSESPPEGATPCTPNAPKKSTTSS 1276
>UNIPROTKB|Q9NZW4 [details] [associations]
symbol:DSPP "Dentin sialophosphoprotein" species:9606 "Homo
sapiens" [GO:0031214 "biomineral tissue development" evidence=IEA]
[GO:0071460 "cellular response to cell-matrix adhesion"
evidence=IEA] [GO:0005578 "proteinaceous extracellular matrix"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=TAS] [GO:0005201 "extracellular matrix structural
constituent" evidence=TAS] [GO:0005509 "calcium ion binding"
evidence=TAS] [GO:0005518 "collagen binding" evidence=TAS]
[GO:0007275 "multicellular organismal development" evidence=TAS]
[GO:0001503 "ossification" evidence=TAS] GO:GO:0005578
GO:GO:0005509 GO:GO:0001501 GO:GO:0005518 eggNOG:NOG12793
GO:GO:0031214 GO:GO:0001503 GO:GO:0005201 EMBL:AF163151
EMBL:AC093895 EMBL:AF094508 IPI:IPI00872967 RefSeq:NP_055023.2
UniGene:Hs.678914 ProteinModelPortal:Q9NZW4 STRING:Q9NZW4
PhosphoSite:Q9NZW4 DMDM:215273974 PaxDb:Q9NZW4 PRIDE:Q9NZW4
Ensembl:ENST00000282478 Ensembl:ENST00000399271 GeneID:1834
KEGG:hsa:1834 UCSC:uc003hqu.3 CTD:1834 GeneCards:GC04P088529
HGNC:HGNC:3054 HPA:HPA036230 MIM:125420 MIM:125485 MIM:125490
MIM:125500 MIM:605594 neXtProt:NX_Q9NZW4 Orphanet:1653
Orphanet:166260 Orphanet:166265 PharmGKB:PA27507 HOVERGEN:HBG098252
OMA:ERESKVQ OrthoDB:EOG41RPVG GenomeRNAi:1834 NextBio:7491
PMAP-CutDB:A8MUI0 ArrayExpress:Q9NZW4 Bgee:Q9NZW4 CleanEx:HS_DSPP
Genevestigator:Q9NZW4 GermOnline:ENSG00000152591 GO:GO:0071460
Uniprot:Q9NZW4
Length = 1301
Score = 164 (62.8 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 98/503 (19%), Positives = 195/503 (38%)
Query: 1089 NQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLEDEFDWSLSPEHNLCSDKPVFEDL 1148
N +D D D S+ + D+ + D + + S S + SD +
Sbjct: 532 NGNDDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSS 591
Query: 1149 VEDQSWLENKQENANW-DSE--ADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSD-- 1203
D S N ++++ DS +D SS+ K + + + S +++ + SSD
Sbjct: 592 DSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSS 651
Query: 1204 DKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPEN 1263
D + + S + S +++S S ++ S + S+ + +S D ++
Sbjct: 652 DNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSD-SSNSSESSDSSDSSDS 710
Query: 1264 VSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTV 1323
S + SS S S +S D ++ S S S + +S S D +++
Sbjct: 711 DSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSD-SSNSSDSSDSSDSSNSSDSSD 769
Query: 1324 AKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATAS 1383
+ SS ++ S++ + ++ + N S + + DS SSD S+ D +N++ S
Sbjct: 770 SSDSSDSSDSSNSSDSNDSSNSSDSSDSSN--SSDSSNSSDSSDSSDSSD-SDSSNSSDS 826
Query: 1384 WGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPS-A 1442
+ S ++S + +S + + D D S +SS+ + + + DSS S +
Sbjct: 827 SNSSDSSDSSN-SSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDS 885
Query: 1443 NEKSIVHQIG-GWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSN 1501
NE S N D+ +D S ++++ +D S N S SS+
Sbjct: 886 NESSNSSDSSDSSNSSDSDSSDSS--NSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSD 943
Query: 1502 AWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDSTVN 1561
+ D D++ S++ + + N +S S + S + DS+ +
Sbjct: 944 SSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNS 1003
Query: 1562 AMYTVTRQRLDMFTSEEQDILSD 1584
+ + + D S + SD
Sbjct: 1004 SDSSDSSDSSDSSNSSDSSNSSD 1026
Score = 161 (61.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 90/440 (20%), Positives = 167/440 (37%)
Query: 1085 NEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLE-----DEFDWSLSPEHNLC 1139
++ N D D D + SS + D+ D + D D S S + +
Sbjct: 747 SDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNS 806
Query: 1140 SDKPVFEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWG 1199
SD D + S N +++N +D SS+ + S R++ +
Sbjct: 807 SDSSDSSDSSDSDS--SNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNS 864
Query: 1200 KSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGD 1259
S D + + S S E+S S D + S ++ S + + S S
Sbjct: 865 SDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSS 924
Query: 1260 KPENVSPAAKTS----SGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKS-SED 1314
+ N S + +S S S++S +S D + S S S + S S S D
Sbjct: 925 ESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSD 984
Query: 1315 KLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEW 1374
+ +++ + SS + SS+ + ++ + N S + + DS SSD S+
Sbjct: 985 SSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSN--SSDSSNSSDSSDSSDSSDS 1042
Query: 1375 KDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGW 1434
D ++++ S + S ++S + +S + + D D S+ + SS D S
Sbjct: 1043 SDSSDSSDSSDSSNSSDSSD-SSDSSDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSD 1101
Query: 1435 EDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENES 1494
S S++ N D+ + DS + N+ + DSS + + + S
Sbjct: 1102 SSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSD--SSNSSDSSDSS--ESSDSSDSS 1157
Query: 1495 PQPASSNAWDLPDATGGSET 1514
SS++ D D++ S++
Sbjct: 1158 DSSDSSDSSDSSDSSDSSDS 1177
Score = 160 (61.4 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 81/414 (19%), Positives = 162/414 (39%)
Query: 1105 SSTGIEELDTGCLGEEVDGLED-EFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENAN 1163
SS + D+ E D + + D S S + + + D S N ++++
Sbjct: 686 SSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSD 745
Query: 1164 WDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEA 1223
S++ S D + +S SS ++ + +S D + + S S +++
Sbjct: 746 -SSDSSNSSDSSDSSDSSNSSDSSDSSD-SSDSSDSSNSSDSNDSSNSSDSSDSSNSSDS 803
Query: 1224 SWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKS 1283
S S D ++ S ++ S + S S + S ++ S S S +
Sbjct: 804 SNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSN 863
Query: 1284 SGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVT 1343
S D ++ S S S + ++ +S D + ++ + S + + S D S+
Sbjct: 864 SSDSSDSSDSSNSSDSSD-SSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSD 922
Query: 1344 LEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANAT-ASWGRNGSEENSGWDTKASWK 1402
+ + ++N S + + DS SSD S D +N++ +S + S+ NS + +S
Sbjct: 923 SSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNS 982
Query: 1403 TKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGT 1462
+ + D D S+ + SS D S +S S+N + + D+ +
Sbjct: 983 SDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDS 1042
Query: 1463 DDSCWGKQKL-TENAKGTDDSSWGKQKHTENESPQPA-SSNAWDLPDATGGSET 1514
DS + N+ + DSS ++S + SS + D D++ S++
Sbjct: 1043 SDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSNSSDS 1096
Score = 159 (61.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 93/452 (20%), Positives = 169/452 (37%)
Query: 1140 SDKPVFEDLVEDQ-SWLENKQENANWDSEADCR-KSSEDKWEKLGTSLEKPSSGWRTEGA 1197
SD ED D S N N N ++ D KS K + + + S ++ +
Sbjct: 505 SDSKGAEDDDSDSTSDTNNSDSNGNGNNGNDDNDKSDSGKGKSDSSDSDSSDSSNSSDSS 564
Query: 1198 WGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSF-SEWGTEASWGKS 1256
SD + S S +++S +SS + S ++ S S +++S KS
Sbjct: 565 DSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKS 624
Query: 1257 FGDKPENVSP----AAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSS 1312
K E+ S + +S S++S S D + S S S +S SS
Sbjct: 625 DSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSS 684
Query: 1313 EDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWS 1372
+ + S + + S D S + + + + + S +++ DS SSD S
Sbjct: 685 NSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSS 744
Query: 1373 EWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTK 1432
+ D +N++ S + S+ ++ D+ S + + D D S+ N SS D S
Sbjct: 745 DSSDSSNSSDS--SDSSDSSNSSDSSDS--SDSSDSSDSSNSSDSNDSSNSSDSSDSSNS 800
Query: 1433 GWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTEN 1492
+ S+ +++ S N D+ + DS + ++ + DSS G + N
Sbjct: 801 S-DSSNSSDSSDSSDSSDSDSSNSSDSSNSSDS--SDSSNSSDSSDSSDSSDGSDSDSSN 857
Query: 1493 ESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPG 1552
S SS++ D D++ S++ + SS + N S
Sbjct: 858 RSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDS 917
Query: 1553 VVNDDSTVNAMYTVTRQRLDMFTSEEQDILSD 1584
+ DS+ ++ + D S + SD
Sbjct: 918 SNSSDSSESSNSSDNSNSSDSSNSSDSSDSSD 949
Score = 155 (59.6 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 86/434 (19%), Positives = 166/434 (38%)
Query: 1085 NEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLEDEFDWSLSPEHNLCSDKPV 1144
++ N D D D + SS + ++ + D D D S S + N S+
Sbjct: 735 SDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDS-SDSSDSSNSSDSNDSSNS-- 791
Query: 1145 FEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDD 1204
D S N +++N +D SS+ S S + + S D
Sbjct: 792 -----SDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSD 846
Query: 1205 KLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENV 1264
+ + S S S ++S S D ++ S + S+ E+S D N
Sbjct: 847 SSDGSDSDSSNRS----DSSNSSDSSDSSDSSNSSDSSDSSD-SNESSNSSDSSDS-SNS 900
Query: 1265 SPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVA 1324
S + + S S++S +S D E+ S+ S + +S S D +++ +
Sbjct: 901 SDSDSSDSSNSSDSSDSSNSSDSSES-SNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNS 959
Query: 1325 KPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANAT-AS 1383
SS + + S + +++ S +++ DS SSD S+ D ++++ +S
Sbjct: 960 SDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSS 1019
Query: 1384 WGRNGSEENSGWDTK-ASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSA 1442
N S+ ++ D+ +S + + D D S+ ++SS D S S S+
Sbjct: 1020 DSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSS 1079
Query: 1443 NEKSIVHQIGGWNVPDAKGTDDSCWGKQKL--TENAKGTDDSSWGKQKHTENESPQPASS 1500
+ N D+ + DS ++++ +D S+ + + S SS
Sbjct: 1080 DSSESSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSS 1139
Query: 1501 NAWDLPDATGGSET 1514
N+ D D++ S++
Sbjct: 1140 NSSDSSDSSESSDS 1153
Score = 153 (58.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 83/439 (18%), Positives = 168/439 (38%)
Query: 1083 TENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLE-----DEFDWSLSPEHN 1137
++++ N D + D SS + D+ G + D + D S S + +
Sbjct: 816 SDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSD-GSDSDSSNRSDSSNSSDSSDSSDSS 874
Query: 1138 LCSDKPVFEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTS--LEKPSSGWRTE 1195
SD D E + ++ + + DS++ +S D + +S E +S +
Sbjct: 875 NSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSN 934
Query: 1196 GAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGK 1255
+ +S D + + S + S +++S S D + S ++ S + S
Sbjct: 935 SSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDS 994
Query: 1256 SFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDK 1315
S N S ++ +S S S S+ N S+ S + +S S D
Sbjct: 995 SDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDS 1054
Query: 1316 LEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWK 1375
+++ + SS + SS+ + ++ + N S +++ DS SSD S+
Sbjct: 1055 SNSSDSSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSN--SSDSSDSSDSSDSSDSSDSS 1112
Query: 1376 DHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWE 1435
D ++++ S + S ++S + +S + + D D S+ + SS D S
Sbjct: 1113 DSSDSSDSSNSSDSSDSSD-SSDSSDSSNSSDSSDSSESSDSSDSSDSSDSSDSSDSSDS 1171
Query: 1436 DSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESP 1495
S S+N + D+ + DS ++++ +D S + + S
Sbjct: 1172 SDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDS-SDSSDSSDSSDSSDSSDSSDSSD 1230
Query: 1496 QPASSNAWDLPDATGGSET 1514
SS++ D D++ S +
Sbjct: 1231 SNESSDSSDSSDSSDSSNS 1249
Score = 151 (58.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 87/431 (20%), Positives = 168/431 (38%)
Query: 1085 NEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLEDEFDWSLSPEHNLCSDKPV 1144
++ + DG D D + SS + D+ D D D + S + SD
Sbjct: 842 SDSSDSSDGSDS-DSSNRSDSSNSSDSSDSSDSSNSSDS-SDSSDSNESSNSSDSSDSSN 899
Query: 1145 FEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDD 1204
D D S N ++++ + +D +SS + +S SS SSD
Sbjct: 900 SSD--SDSSDSSNSSDSSDSSNSSDSSESSNSS-DNSNSSDSSNSSDSSDSSDSSNSSDS 956
Query: 1205 KLEKAGSPSRKPSGWGT-EASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPEN 1263
S S S + ++S +S D ++ S + S+ + +S D ++
Sbjct: 957 SNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSD-SSNSSDSSDSSDSSDS 1015
Query: 1264 VSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTV 1323
+ + ++S S +S S D ++ S S S + +S S D + +++
Sbjct: 1016 SNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSD-SSNSSDSSDSSDSSDSSDSSD 1074
Query: 1324 AKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATAS 1383
+ SS +E+S D S + +++ S +++ DS SSD S D ++++ S
Sbjct: 1075 SSDSSD-SSESS-DSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDS 1132
Query: 1384 WGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSAN 1443
+ S NS + +S + + D D S+ + SS D S S S++
Sbjct: 1133 SDSSDSS-NSSDSSDSSESSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSD 1191
Query: 1444 EKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAW 1503
+ D+ + DS ++++ +D S + + + S SSN+
Sbjct: 1192 SSDSSDSSDSSDSSDSSDSSDSSDSSDS-SDSSDSSDSSDSNESSDSSDSSDSSDSSNSS 1250
Query: 1504 DLPDATGGSET 1514
D D++ S++
Sbjct: 1251 DSSDSSDSSDS 1261
Score = 151 (58.2 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 82/410 (20%), Positives = 158/410 (38%)
Query: 1157 NKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKP 1216
N ++AN SE+D SS + +G ++GA SD + S S
Sbjct: 472 NGNDDAN--SESDNNSSSRGDASYNSDESKDNGNGSDSKGAEDDDSDSTSDTNNSDSNGN 529
Query: 1217 SGWG------TEASWGES-SCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAK 1269
G +++ G+S S D + S ++ S +++S S D + S ++
Sbjct: 530 GNNGNDDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSD 589
Query: 1270 TSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSA 1329
+S S++S S D ++ S S S +K+ KS D + + + S++
Sbjct: 590 SSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSD--SKSDSSKSESDSSDSDSKSDSSDSNS 647
Query: 1330 WGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGS 1389
+ + D S + +++ S + + DS SSD S+ D +N++ S + S
Sbjct: 648 SDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDS 707
Query: 1390 EENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVH 1449
++ D+ S + + D D ++ ++S S D S +S S++ +
Sbjct: 708 SDSDSSDSSDSSNSNSSDS--DSSNSSDSSDS--SNSSDSSDSSDSSNSSDSSDSSDSSN 763
Query: 1450 QIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDAT 1509
+ D+ + DS +++ +D S + N S SS++ D D++
Sbjct: 764 SSDSSDSSDSSDSSDSS-NSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSD-SDSS 821
Query: 1510 GGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDST 1559
S++ + SS G NR S + DS+
Sbjct: 822 NSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSS 871
Score = 149 (57.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 81/394 (20%), Positives = 164/394 (41%)
Query: 1126 DEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSL 1185
D D S S + + SD D D S N E+++ +D SS+ S
Sbjct: 667 DSSDSSDSSDSSSSSDSSNSSDS-SDSSDSSNSSESSDSSDSSDS-DSSDSSDSSNSNSS 724
Query: 1186 EKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFS 1245
+ SS ++ + +S D + + S + S +++S S D ++ S + + S
Sbjct: 725 DSDSSN-SSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSS 783
Query: 1246 EWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAK 1305
+ ++S D N S ++ +S S++S SS N S++ S +
Sbjct: 784 D-SNDSSNSSDSSDS-SNSSDSSNSSDS--SDSS--DSSDSDSSNSSDSSNSSDSSDSSN 837
Query: 1306 ASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDS 1365
+S S D + ++ + S + + S D S + +++ S +++ DS
Sbjct: 838 SSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDS 897
Query: 1366 GKSSDWSEWKDHANAT-ASWGRNGSEE----NSGWDTKASWKTKALDKLDDVGSAVENSS 1420
SSD S+ D +N++ +S N S+ NS ++ +S + + D D S+ NSS
Sbjct: 898 SNSSD-SDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSS--NSS 954
Query: 1421 SVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTD 1480
+ + ++ DS+ +++ S + + D+ + DS ++++ +D
Sbjct: 955 DSSNSSDSSNSSDSSDSNSSDSSDSS--NSSDSSDSSDSSDSSDSS-DSSNSSDSSDSSD 1011
Query: 1481 DSSWGKQKHTENESPQPASSNAWDLPDATGGSET 1514
S + N S SS++ D D++ S++
Sbjct: 1012 SSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDS 1045
Score = 147 (56.8 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 92/458 (20%), Positives = 175/458 (38%)
Query: 1083 TENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLEDEFDWSLSPEHNLCSDK 1142
++++ N+ D + D SS + D+ E + D D S S + + SD
Sbjct: 851 SDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNS-SDSSDSSNSSDSD-SSDS 908
Query: 1143 PVFEDLVEDQSWLENKQE-NANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKS 1201
D + + ++ + N++ +S + +S D + +S SS ++ +
Sbjct: 909 SNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSN-SSDSSNSSD 967
Query: 1202 SDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKP 1261
S D S S S +++S S D ++ S + S+ +++S +
Sbjct: 968 SSDSNSSDSSDSSNSSD-SSDSSDSSDSSDSSDSSNSSDSSDSSD-SSDSSNSSDSSNSS 1025
Query: 1262 ENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVET 1321
++ + + + S S++S S D ++ S S S + +S S D + E+
Sbjct: 1026 DSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSD-SSDSSDSSDSSDSSDSSES 1084
Query: 1322 TVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANAT 1381
+ + SS + S D S + +++ S + + DS SSD S+ D +N++
Sbjct: 1085 SDSSDSS--NSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSS 1142
Query: 1382 ASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPS 1441
S + SE + D+ S + + D D S+ + SS D S S S
Sbjct: 1143 DS--SDSSESSDSSDSSDS--SDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDS 1198
Query: 1442 ANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSN 1501
++ + D+ + DS N + +D S + N S SS+
Sbjct: 1199 SDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSN-ESSDSSDSSDSSDSSNSSD---SSD 1254
Query: 1502 AWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGE 1539
+ D D+T S E QS+ N + S E
Sbjct: 1255 SSDSSDSTSDSNDESD--SQSKSGNGNNNGSDSDSDSE 1290
Score = 43 (20.2 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 28/119 (23%), Positives = 46/119 (38%)
Query: 1090 QDDGVDVYDFLHMVRSSTGIEE--LDTGCLGEEVDGLEDEFDWSLSPEHNLCSDKPVFED 1147
Q+DG V +ST E+ ++ C E G E ++ + N + V
Sbjct: 180 QEDGPQVAGS----NNSTDNEDEIIENSCRNE---GNTSEITPQINSKRNGTKEAEVTPG 232
Query: 1148 LVEDQSWLENKQ--ENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGA-WGKSSD 1203
ED L+N + N E + S +D+ E+ G + ++ EG GK D
Sbjct: 233 TGEDAG-LDNSDGSPSGNGADEDEDEGSGDDEDEEAGNGKDSSNNSKGQEGQDHGKEDD 290
Score = 38 (18.4 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 968 LETIIKENWWVRQRLSASVTMVAKGVL 994
L + + N V+ L+AS T+ GVL
Sbjct: 34 LHLLARSNVSVQDELNASGTIKESGVL 60
>MGI|MGI:3645678 [details] [associations]
symbol:Flg2 "filaggrin family member 2" species:10090 "Mus
musculus" [GO:0005509 "calcium ion binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001751 InterPro:IPR002048
InterPro:IPR011992 PROSITE:PS00303 PROSITE:PS50222 Prosite:PS00018
MGI:MGI:3645678 GO:GO:0005509 Gene3D:1.10.238.10 InterPro:IPR018247
eggNOG:NOG12793 InterPro:IPR013787 Pfam:PF01023 CTD:388698
HOGENOM:HOG000112590 KO:K10384 OrthoDB:EOG4RJG10 EMBL:DQ118292
EMBL:AK036878 IPI:IPI00406870 RefSeq:NP_001013826.1
UniGene:Mm.10755 HSSP:P24480 ProteinModelPortal:Q2VIS4 SMR:Q2VIS4
STRING:Q2VIS4 PhosphoSite:Q2VIS4 PaxDb:Q2VIS4 PRIDE:Q2VIS4
GeneID:229574 KEGG:mmu:229574 UCSC:uc008qfe.1 InParanoid:Q2VIS4
NextBio:379521 Genevestigator:Q2VIS4 Uniprot:Q2VIS4
Length = 2362
Score = 166 (63.5 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 93/397 (23%), Positives = 156/397 (39%)
Query: 1190 SGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGT 1249
SG R GK + + +GS SG + G + + GS + S
Sbjct: 610 SGSRHSSGSGKHESGRSQSSGS-GHHGSG-SQQHGGGSGNSTGFGEHGSSSHPLPSSGQN 667
Query: 1250 EASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWG 1309
E+S G+S + E + SSG+G S S N GS S W G
Sbjct: 668 ESSSGQS--SRSERHGTGSGQSSGFGQHGSGSHQSSSSGHNEYGSGQTS-SSW--PHGKG 722
Query: 1310 KSSEDKLEEVETTVAKPSSAW--GTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGK 1367
E E E+ + SS+W GT SSE E+ + P ++ S W + SG+
Sbjct: 723 SGQESGYGEQESGHGQSSSSWQHGTGPGQSSSSE---EEESRPGQSS-SSW-QHGKGSGQ 777
Query: 1368 SSDWSEWK-DHANATASW--GRNGSEENSGW-DTKA--SWKTKALDKLDDVGSAVENSSS 1421
S + E + H +++SW G ++SG+ + K+ S +++ G ++
Sbjct: 778 ESGYGEQEAGHGQSSSSWQHGTGAGNQSSGYGEHKSGPSHSSRSWHHGTGSGQSLGFGQH 837
Query: 1422 VWGAREDFSTKGWEDSSKPSANEKSIVHQIG---GWNVPDA-KGTDDSCW--GKQKLTEN 1475
G+ + S+ +E S+PS++ + G G+ ++ G S W G + N
Sbjct: 838 GKGSHQSESSGHYESVSEPSSSSWQHGNGSGESYGYGEHESGHGQSSSAWNHGNESGQSN 897
Query: 1476 AKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWAS 1535
G +S G+ N + SN + G +E+ G ++E F
Sbjct: 898 GYGEHESGHGQSSSAWNHGNESGQSNGF------GENESGRDQEGYQQRESFHGQHRHPL 951
Query: 1536 SSGEWKGK--KNRPPRSPGVVNDDSTVNAMYTVTRQR 1570
S E + R PRSP V+ +S+ ++V +R
Sbjct: 952 SQHEQHSQFGYGRSPRSP--VHPESSEGEEHSVVPRR 986
Score = 38 (18.4 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 18/78 (23%), Positives = 27/78 (34%)
Query: 1598 QSGYNDGDRLSADDKSFI-FDNVFNYHPDKAMKMGAGI---DHFKVDKHGSFQDSRCLFV 1653
QSGY RL ++ +S I F + + + G DH + + +
Sbjct: 2091 QSGYGPSGRLRSNSQSSIPFSSAHRATNMEVLPCGQSFSPSDHVGTKANEQIGELVFKYR 2150
Query: 1654 VSTDGSQQDFSYRKCLES 1671
S G Q Y ES
Sbjct: 2151 ESETGPDQSVDYYNLTES 2168
>DICTYBASE|DDB_G0271916 [details] [associations]
symbol:rtoA "unknown" species:44689 "Dictyostelium
discoideum" [GO:0006972 "hyperosmotic response" evidence=IEP]
[GO:0006906 "vesicle fusion" evidence=IMP] [GO:0006979 "response to
oxidative stress" evidence=IEP] [GO:0006874 "cellular calcium ion
homeostasis" evidence=IMP] [GO:0048388 "endosomal lumen
acidification" evidence=IMP] [GO:0031210 "phosphatidylcholine
binding" evidence=IDA] [GO:0031154 "culmination involved in
sorocarp development" evidence=IMP] [GO:0005509 "calcium ion
binding" evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0006944 "cellular membrane fusion" evidence=IDA]
[GO:0006887 "exocytosis" evidence=IMP] [GO:0006885 "regulation of
pH" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0007049 "cell
cycle" evidence=IMP] [GO:0045595 "regulation of cell
differentiation" evidence=IMP] dictyBase:DDB_G0271916 GO:GO:0005524
GO:GO:0005737 GO:GO:0006979 GO:GO:0045595 GenomeReviews:CM000151_GR
EMBL:AAFI02000007 GO:GO:0006972 GO:GO:0048388 GO:GO:0031210
GO:GO:0006874 GO:GO:0006887 eggNOG:NOG12793 GO:GO:0031154
GO:GO:0006906 EMBL:U48298 RefSeq:XP_645420.1
EnsemblProtists:DDB0185120 GeneID:8618200 KEGG:ddi:DDB_G0271916
OMA:CSKETHI ProtClustDB:CLSZ2431310 Uniprot:P54681
Length = 367
Score = 136 (52.9 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 63/266 (23%), Positives = 111/266 (41%)
Query: 1151 DQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAG 1210
D S + + N+ SE SS + TS +SG G+ S +G
Sbjct: 35 DSSDISSSGSNSTASSEGSVSSSSNSGSQS--TS----NSGSEASGS-SNSGSQSTSNSG 87
Query: 1211 SPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKT 1270
S + S G+++S S+ + GS + S S + S +S D + S +
Sbjct: 88 SEASGSSNSGSQSSTDSSNSGSQGSTGSSNSGSQSSTDSSNSGSQSSTDSSNSGSQGSTG 147
Query: 1271 SSGWGSEASWGKSSGDR----QENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKP 1326
SS GSE+S +SG N G +S S G+++S G S+ ++ +
Sbjct: 148 SSNSGSESSGSSNSGSEGSTGSSNSGSESSSGSSNSGSESSSGSSNSGSESSSGSSNSGS 207
Query: 1327 SSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGR 1386
S+ G+ S +SS + + + + S G+E+ SG S+ SE +N+ +
Sbjct: 208 ESSSGSSNSGSESSSGSSNS-GSESSSGSSNSGSESS-SGSSNSGSESSGSSNSGSESSS 265
Query: 1387 NGSEENSGWDTKASWK-TKALDKLDD 1411
+ + G T S+ T +++ +DD
Sbjct: 266 DSGSSSDGKTTCISFHDTLSINTVDD 291
Score = 134 (52.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 69/257 (26%), Positives = 109/257 (42%)
Query: 1195 EGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWG 1254
+G+ G SS + S SG + AS E S N GS +S S G+EAS
Sbjct: 20 QGSIGSSSQSLSSEVDSSDISSSGSNSTAS-SEGSVSSSSNSGS---QSTSNSGSEASGS 75
Query: 1255 KSFGDKP-ENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSE 1313
+ G + N A SS GS++S S+ Q + G S S S + S +SS
Sbjct: 76 SNSGSQSTSNSGSEASGSSNSGSQSSTDSSNSGSQGSTGSSNSGSQSSTDSSNSGSQSST 135
Query: 1314 DKLEEVETTVAKPSSAWGTEASWDKSS--EVTLEKVAAPAENPL--SGWGTEAQDSGKSS 1369
D + + SS G+E+S +S E + + +E+ S G+E+ SG S+
Sbjct: 136 DSSNS-GSQGSTGSSNSGSESSGSSNSGSEGSTGSSNSGSESSSGSSNSGSESS-SGSSN 193
Query: 1370 DWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLD---DVGSAVENSSSVWGAR 1426
SE ++ + S +GS NSG ++ + + + GS + SS G+
Sbjct: 194 SGSESSSGSSNSGSESSSGSS-NSGSESSSGSSNSGSESSSGSSNSGSESSSGSSNSGSE 252
Query: 1427 EDFSTKGWEDSSKPSAN 1443
S+ +SS S +
Sbjct: 253 SSGSSNSGSESSSDSGS 269
Score = 124 (48.7 bits), Expect = 0.00048, P = 0.00048
Identities = 66/265 (24%), Positives = 114/265 (43%)
Query: 1184 SLEKPSSGWRTEGAWGKSSDDKL--EKAGSPSRKPSGWGTEASWGESS-CDKWENVGSPA 1240
S E SS + G+ +S + + S S+ S G+EAS +S N GS A
Sbjct: 31 SSEVDSSDISSSGSNSTASSEGSVSSSSNSGSQSTSNSGSEASGSSNSGSQSTSNSGSEA 90
Query: 1241 A---KSFSEWGTEASWGKSFGD--KPENVSPAAKTSSGWGSEASWGKSSGDRQENVG--- 1292
+ S S+ T++S S G + S ++ SS GS++S S+ Q + G
Sbjct: 91 SGSSNSGSQSSTDSSNSGSQGSTGSSNSGSQSSTDSSNSGSQSSTDSSNSGSQGSTGSSN 150
Query: 1293 -GSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPA 1351
GS S S G++ S G S+ ++ + S+ G+ S +SS + + +
Sbjct: 151 SGSESSGSSNSGSEGSTGSSNSGSESSSGSSNSGSESSSGSSNSGSESSSGSSNS-GSES 209
Query: 1352 ENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDD 1411
+ S G+E+ SG S+ SE ++ + S +GS NSG ++ S + D
Sbjct: 210 SSGSSNSGSESS-SGSSNSGSESSSGSSNSGSESSSGSS-NSGSESSGS-SNSGSESSSD 266
Query: 1412 VGSAVENSSSVWGAREDFSTKGWED 1436
GS+ + ++ + S +D
Sbjct: 267 SGSSSDGKTTCISFHDTLSINTVDD 291
>UNIPROTKB|P0C504 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 EMBL:AY522331 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 HAMAP:MF_01323 ProteinModelPortal:P0C504
Gramene:P0C504 HOGENOM:HOG000054284 Genevestigator:P0C504
Uniprot:P0C504
Length = 682
Score = 148 (57.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 49/193 (25%), Positives = 91/193 (47%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
+ R + K +S RSVI +++ G+P EIA + + + +++L+
Sbjct: 366 RFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA--------IKLFQLFVIRDLITK 417
Query: 306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
+ + + + R+ + + +++ + +M G V +NR PT H+ +QA
Sbjct: 418 R-----ATSNVRIAKRKIWEKEPIV--WEIL-QEVMRGHPVLLNRAPTLHRLGIQAFQPT 469
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
+ + T+ ++PL+C +ADFDGD + + P SL A+AE L LLS G+
Sbjct: 470 LVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPIC 529
Query: 426 QLATDALLSLKVM 438
D L+ L V+
Sbjct: 530 VPTQDMLIGLYVL 542
Score = 43 (20.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 57 CESCGTS-EPGKCEGH-FGYIELPIPIYHPSHISEL 90
C+ CG + + GYI+L P+ H ++ L
Sbjct: 87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGL 122
>UNIPROTKB|P0C505 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:AY522329 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 ProtClustDB:CHL00018
HAMAP:MF_01323 RefSeq:YP_654207.2 ProteinModelPortal:P0C505
GeneID:4126923 Gramene:P0C505 Uniprot:P0C505
Length = 682
Score = 148 (57.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 49/193 (25%), Positives = 91/193 (47%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
+ R + K +S RSVI +++ G+P EIA + + + +++L+
Sbjct: 366 RFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA--------IKLFQLFVIRDLITK 417
Query: 306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
+ + + + R+ + + +++ + +M G V +NR PT H+ +QA
Sbjct: 418 R-----ATSNVRIAKRKIWEKEPIV--WEIL-QEVMRGHPVLLNRAPTLHRLGIQAFQPT 469
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
+ + T+ ++PL+C +ADFDGD + + P SL A+AE L LLS G+
Sbjct: 470 LVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPIC 529
Query: 426 QLATDALLSLKVM 438
D L+ L V+
Sbjct: 530 VPTQDMLIGLYVL 542
Score = 43 (20.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 57 CESCGTS-EPGKCEGH-FGYIELPIPIYHPSHISEL 90
C+ CG + + GYI+L P+ H ++ L
Sbjct: 87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGL 122
>UNIPROTKB|P0C506 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
GenomeReviews:AY522330_GR Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 eggNOG:COG0086 ProtClustDB:CHL00018 HAMAP:MF_01323
PIR:JQ0214 RefSeq:NP_039374.1 ProteinModelPortal:P0C506
STRING:P0C506 EnsemblPlants:LOC_Osp1g00250.1 GeneID:3131433
KEGG:osa:3131433 Gramene:P0C506 KO:K03046 OMA:VIDNFIA
Uniprot:P0C506
Length = 682
Score = 148 (57.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 49/193 (25%), Positives = 91/193 (47%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
+ R + K +S RSVI +++ G+P EIA + + + +++L+
Sbjct: 366 RFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA--------IKLFQLFVIRDLITK 417
Query: 306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
+ + + + R+ + + +++ + +M G V +NR PT H+ +QA
Sbjct: 418 R-----ATSNVRIAKRKIWEKEPIV--WEIL-QEVMRGHPVLLNRAPTLHRLGIQAFQPT 469
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
+ + T+ ++PL+C +ADFDGD + + P SL A+AE L LLS G+
Sbjct: 470 LVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPIC 529
Query: 426 QLATDALLSLKVM 438
D L+ L V+
Sbjct: 530 VPTQDMLIGLYVL 542
Score = 43 (20.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 57 CESCGTS-EPGKCEGH-FGYIELPIPIYHPSHISEL 90
C+ CG + + GYI+L P+ H ++ L
Sbjct: 87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGL 122
>UNIPROTKB|Q6ENI3 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AP006728
GO:GO:0003899 RefSeq:YP_052740.1 ProteinModelPortal:Q6ENI3
GeneID:2885900 Gramene:Q6ENI3 ProtClustDB:CHL00018 HAMAP:MF_01323
Uniprot:Q6ENI3
Length = 682
Score = 148 (57.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 49/193 (25%), Positives = 91/193 (47%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
+ R + K +S RSVI +++ G+P EIA + + + +++L+
Sbjct: 366 RFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIA--------IKLFQLFVIRDLITK 417
Query: 306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
+ + + + R+ + + +++ + +M G V +NR PT H+ +QA
Sbjct: 418 R-----ATSNVRIAKRKIWEKEPIV--WEIL-QEVMRGHPVLLNRAPTLHRLGIQAFQPT 469
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
+ + T+ ++PL+C +ADFDGD + + P SL A+AE L LLS G+
Sbjct: 470 LVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPIC 529
Query: 426 QLATDALLSLKVM 438
D L+ L V+
Sbjct: 530 VPTQDMLIGLYVL 542
Score = 43 (20.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 57 CESCGTS-EPGKCEGH-FGYIELPIPIYHPSHISEL 90
C+ CG + + GYI+L P+ H ++ L
Sbjct: 87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGL 122
>UNIPROTKB|F1P8I7 [details] [associations]
symbol:TNRC6C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000449
InterPro:IPR000504 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR026804 Pfam:PF00627 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 GO:GO:0031047 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 InterPro:IPR026805
PANTHER:PTHR31070 Pfam:PF10427 Pfam:PF12938 OMA:WDADSNR
EMBL:AAEX03006251 EMBL:AAEX03006252 Ensembl:ENSCAFT00000008443
Uniprot:F1P8I7
Length = 1933
Score = 158 (60.7 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 98/436 (22%), Positives = 166/436 (38%)
Query: 1148 LVEDQSWLENK-QENANWDSEADCR--KSSEDKWEKLGTSLEKPS-SGWRTEGAWGKSSD 1203
++ + W + ++N W+ E R + +++ E G + +PS SG +++G+ S++
Sbjct: 653 VLSNTGWGQTPVKQNTAWEFEESPRSERKNDNGTEAWGCAATQPSNSGGKSDGSIVNSTN 712
Query: 1204 DKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPEN 1263
+G S P+ WG+SS +K N P WG S N
Sbjct: 713 TS-SVSGWASAPPAAGPANTGWGDSS-NKAPN--GPGV-----WGDSIS-----STAVNN 758
Query: 1264 VSPAAKTSSGWGSEAS-------WGKSSGDRQENVG-GSASKPLSGWGAKAS-WGKSSED 1314
+ A+K+ W + WG+ + +N G G S P W A W SS
Sbjct: 759 AAAASKSGHAWSGTVNQEDKSPTWGEPQKPKSQNWGDGQKSNP--AWSAGGGDWTDSSS- 815
Query: 1315 KLEEVETTVAKPSSAWGTEASWDKS--SEVTLEKVAAPAE------NPLSGWGTEAQDSG 1366
L + K S W +++ S ++ T + NP + WG E+ G
Sbjct: 816 VLGHLGDG-KKNGSGWDADSNRSGSGWNDATRSGTSGWGNGTNAKVNPGTNWG-ESLKPG 873
Query: 1367 KSSDWSEWKDHANATASWGRNGS--EENSGWDTKASWKTKALDKLDDVGSAVENSSSVWG 1424
+W+ K N ++WG S + +GW K D + G + S+
Sbjct: 874 PQQNWAG-KPQDNNVSNWGGAASVKQTGTGW-IGGPVPVKQKDSSEATGWEEPSPPSIRR 931
Query: 1425 ARE-DFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGTD--D 1481
E D T W D S + N K++ + N P + + + T + TD +
Sbjct: 932 KMEIDDGTSAWGDPS--NYNNKTV--NMWDRNNPGLQSSTTAA-ATTTTTTTSSSTDLVE 986
Query: 1482 SSWGKQKHTE-NESPQ--PASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRG---WAS 1535
+ Q T+ N SP P S+ ++P+ +E+ WG+ + G W
Sbjct: 987 TPPPHQASTQLNRSPLLGPVSAGWGEMPNVHSKAESS---WGEPSSPSALVDNGTAAWGK 1043
Query: 1536 --SSGE-WKGKKNRPP 1548
SSG W + PP
Sbjct: 1044 PPSSGSGWGDQPTEPP 1059
Score = 43 (20.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 20/84 (23%), Positives = 33/84 (39%)
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 787
V+ ++GTV +SI A+ + G P G L A P +S S
Sbjct: 321 VLGHEGTVATGNPSSICSPVSAIGQNTGNQ---NGNPTGTLGAWGNLLPQESTEPQTSTS 377
Query: 788 SNNSWELMKEILLCRVSFNNDPID 811
N S+ + + L N +P++
Sbjct: 378 QNVSFSVQPQNLNTDGPNNTNPMN 401
>ZFIN|ZDB-GENE-070705-475 [details] [associations]
symbol:si:dkey-46g23.1 "si:dkey-46g23.1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR012677 InterPro:IPR026804 ZFIN:ZDB-GENE-070705-475
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 EMBL:BX322654 IPI:IPI00900135 PRIDE:F1QG93
Ensembl:ENSDART00000140482 Bgee:F1QG93 Uniprot:F1QG93
Length = 1443
Score = 143 (55.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 101/463 (21%), Positives = 165/463 (35%)
Query: 1131 SLSPEHNLCSDKPVFEDLVEDQSW-LENKQENANWDSEADCRKSSEDKWEKLGTSLEKPS 1189
+L P+ LC+ + ++ +W E N WD+E + +S E W++ G L
Sbjct: 421 NLDPKV-LCNTGWGKTQIKQNVAWDFEADVGNVGWDAEVNTERSKEG-WQEAG-DLSNSK 477
Query: 1190 SGWRTEGAWGKSSD--DKLEKAGSPSRKPSGWGTE---AS------WGESSCDKWENVGS 1238
+ G G++ ++ E + K GWG + AS W + +W V
Sbjct: 478 MQKQEVGHMGRAQGWTERGEMSIGTGHKAGGWGEDQEGASRREGTGWSQGGGKEWTPV-- 535
Query: 1239 PAAKSFSEW-GT---EASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGS 1294
P A + E GT E WG P + KT GWG E ++Q +
Sbjct: 536 PEAGGWKEEKGTNQNEGLWGSPEDSGPRSGGWDCKTHQGWG-EKLLPSQIPNKQAALKTQ 594
Query: 1295 ASKPLSGWGAKAS---WGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPA 1351
+P + + K +D+ E S W + ++A+
Sbjct: 595 NQQPQQQSQTQQQMPGYPKVVQDRGRTGENDEQSKGSGWSCGP---------IPQIASAG 645
Query: 1352 ENPLSGWGTEAQDSGKSSDWSEWKDHANATASWG---RNGSEENSGWDTKASWKTKALDK 1408
E P SGW D S D + T++WG R S+ + WD +S + +
Sbjct: 646 E-P-SGW-----DEPSPQSISRKMDIDDGTSAWGDPSRYSSKNVNLWDKNSS-QPQQQSS 697
Query: 1409 LDDVGSAVENSS-SVWGAREDFSTKGWEDSSKPSANEKSIVHQIG--GWNVPDAKGTDDS 1465
G+ +NS ++W R + G DSS S + G GW G
Sbjct: 698 GRPAGTPSKNSGPAIW-TR----SSGPSDSSMESGPAPWVKPFDGSSGWGESSEPGKGG- 751
Query: 1466 CWGKQKLTENAKGTDD--SSWGKQ--KHTENESPQPASSNAWDLPDATGGSETEMQV--W 1519
WG N G+ WG + + + S + W + + W
Sbjct: 752 -WGNSHSHPNKTGSKSMQEGWGDEGSNSSRHSSWEEEDGGVWGGRGSQSNMSSSYSSGGW 810
Query: 1520 GQSR-KEPFKKNRGWASSSGE-WKGKKNRPPRSPGVVNDDSTV 1560
GQS+ +SG+ W +R + GV +DDS++
Sbjct: 811 GQSQGSRRLSSKSPLKGNSGDSWVSPVSRQFSNMGVTDDDSSM 853
>TAIR|locus:2098383 [details] [associations]
symbol:AT3G28780 "AT3G28780" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0010584
"pollen exine formation" evidence=RCA;IMP] [GO:0006944 "cellular
membrane fusion" evidence=RCA] [GO:0009827 "plant-type cell wall
modification" evidence=RCA] [GO:0009860 "pollen tube growth"
evidence=RCA] [GO:0016192 "vesicle-mediated transport"
evidence=RCA] EMBL:CP002686 GO:GO:0010584 IPI:IPI00543728
RefSeq:NP_189520.2 UniGene:At.42733 PRIDE:F4J0E6
EnsemblPlants:AT3G28780.1 GeneID:822510 KEGG:ath:AT3G28780
OMA:MEQTRIS InterPro:IPR009605 Pfam:PF06746 Uniprot:F4J0E6
Length = 674
Score = 137 (53.3 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 84/271 (30%), Positives = 113/271 (41%)
Query: 1182 GTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRK-PSGWGTEASWGESSCDKWENVGSPA 1240
G S E S G G G+S+ GS SG G AS GES+ + GSP
Sbjct: 362 GESGEAASGGSAETG--GESASAGAASGGSAETGGESGSGGAASGGESASGGATSGGSPE 419
Query: 1241 AKSFSEWGTE-ASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQ---ENV-GGSA 1295
+E G E AS G + G + + A+ S G E++ S G + E+ GG+A
Sbjct: 420 TGGSAETGGESASGGAASGGESASGGAASSGSVESGGESTGATSGGSAETSDESASGGAA 479
Query: 1296 SKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPL 1355
S S G AS G S+E E + VA S AS +S + E A
Sbjct: 480 SGGESASGGAASGG-SAETGGESTSSGVASGGSTGSESASAGAASGGSTEANGGAA---- 534
Query: 1356 SGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSA 1415
+G TEA SG S++ S +A+ G SE +SG T A +++ GSA
Sbjct: 535 AGGSTEA-GSGTSTETSSM---GGGSAAAG-GVSESSSGGSTAAGGTSESASG----GSA 585
Query: 1416 VENSSSVWGAREDFSTKGWEDSSKPSANEKS 1446
+S G D ST G + PSA S
Sbjct: 586 TAGGAS-GGTYTD-STGG-SPTGSPSAGGPS 613
>WB|WBGene00022816 [details] [associations]
symbol:fbn-1 species:6239 "Caenorhabditis elegans"
[GO:0005509 "calcium ion binding" evidence=IEA] [GO:0004252
"serine-type endopeptidase activity" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000742 InterPro:IPR001881 InterPro:IPR018097
Pfam:PF07645 PROSITE:PS01187 PROSITE:PS50026 SMART:SM00179
SMART:SM00181 InterPro:IPR000152 GO:GO:0040010 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0000003 GO:GO:0005509
InterPro:IPR013032 PROSITE:PS00022 PROSITE:PS01186 eggNOG:NOG12793
PROSITE:PS00010 InterPro:IPR009030 SUPFAM:SSF57184 Pfam:PF12661
InterPro:IPR024731 Pfam:PF12947 InterPro:IPR001507 SMART:SM00241
PROSITE:PS51034 GeneTree:ENSGT00700000104291 Gene3D:2.40.155.10
InterPro:IPR023413 EMBL:FO081701 EMBL:FO080623 RefSeq:NP_498670.2
MINT:MINT-3386706 PaxDb:Q23587 EnsemblMetazoa:ZK783.1 GeneID:176076
KEGG:cel:CELE_ZK783.1 UCSC:ZK783.1 CTD:176076 WormBase:ZK783.1e
HOGENOM:HOG000214265 InParanoid:Q23587 OMA:IGSFKCV Uniprot:Q23587
Length = 2687
Score = 142 (55.0 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 90/347 (25%), Positives = 146/347 (42%)
Query: 1165 DSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEK-AGSPSRKP-SGWGTE 1222
D + K+ D EKL ++EK ++ G+ SS K E +GS S SG G+E
Sbjct: 758 DKTGEGSKTESDGEEKL--TVEKDGKEAQSSGSSATSSGKKSEATSGSSSSSAKSGTGSE 815
Query: 1223 ASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPE-NVSPAAKTSSGW-GSEASW 1280
AS G S G + +S S TE+ SFG +V A S+G GSE+
Sbjct: 816 AS-GSSGASSSSGSGV-SGESGSSVSTESG---SFGTSSSGSVGSEATGSTGVDGSESGK 870
Query: 1281 -GKSSGDRQENVGGSASK-PLSG---WGAKASWGKSSEDKLEEVET-TVAKPSSAW---G 1331
KSS + + + K P+SG G ++S +S +E ++ T S W G
Sbjct: 871 PSKSSTEEKLPFTKNGEKSPISGSDTTGKESSEETTSRKPIEGSDSLTEGSGSGEWFETG 930
Query: 1332 TEASWDKSSEVTLEKVAAPAENPL--SGWGTEAQDSGKSSDWSEWKDHANATASWGRNGS 1389
++ ++ S+V++ P ++ SG G + + + + + +++T++ ++G
Sbjct: 931 SKGHFESGSKVSVTSGKGPTQSGAEGSGSGPKVPKGPGAPEITTDGEESSSTSTGDKSGG 990
Query: 1390 EENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDF---STKGWEDSSKPSANEKS 1446
+ D K KT DK D+ + E+S+S E +KG K S +K
Sbjct: 991 KPADKSDNKNVPKTG--DKNPDITTDGEDSTSETSGGEQGPKGKSKGQPPGDKGSEVKKP 1048
Query: 1447 IVHQIGGWNVPDAKGTDDSCWGKQKLTENAKGT-DDSSWGKQKHTEN 1492
G N+ KG + L E G SS GK E+
Sbjct: 1049 TSEVDGPGNLSGTKGKSNVPLKPTDLPEEGSGILTTSSGGKNSTFEH 1095
>UNIPROTKB|I3LK32 [details] [associations]
symbol:TNRC6C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060964 "regulation of gene silencing by miRNA"
evidence=IEA] [GO:0035162 "embryonic hemopoiesis" evidence=IEA]
[GO:0001706 "endoderm formation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR026804 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR015940 PROSITE:PS50030 GO:GO:0031047
SUPFAM:SSF46934 GeneTree:ENSGT00410000025966 InterPro:IPR026805
PANTHER:PTHR31070 Pfam:PF12938 OMA:WDADSNR
Ensembl:ENSSSCT00000025059 Uniprot:I3LK32
Length = 1485
Score = 154 (59.3 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 82/330 (24%), Positives = 122/330 (36%)
Query: 1211 SPSRKPSGWGTEAS----WGESSCDKWENVGSPAAKSFSEWGTEAS--------WGKSFG 1258
+P ++ + W E S SS W + A + + WG +S WG +
Sbjct: 397 TPVKQNTAWEFEESPRNSTNTSSVSGWVSSPPAAVPANTGWGDSSSKAPNGPGVWGDAIS 456
Query: 1259 DKPENVSPAAKTSSGWGSEAS-------WGKSSGDRQENVG-GSASKPLSGWGAKAS-WG 1309
+ AAK+ WG S W + R +N G G S P WGA W
Sbjct: 457 STAVTNAAAAKSGHAWGGTVSQEDKSPTWAEPQKPRSQNWGEGPKSNP--AWGAGGGDWA 514
Query: 1310 KSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSS 1369
+SS L + K S W EA +S NP + WG E+ G
Sbjct: 515 ESSSVVLGHLGDG-KKGGSGWDAEAP--RSGPGGWGNGTHAKVNPGTSWG-ESLKPGPQQ 570
Query: 1370 DWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGARE-- 1427
W+ K +T++WG E +GW+ + + ++DD SA + S+
Sbjct: 571 SWAS-KPQDASTSNWGX----EATGWEEPSPPSIRRKMEIDDGTSAWGDPSTYHNKTVNM 625
Query: 1428 -DFSTKGWEDSSKPSANEKSIV-----HQIG--GWNVPDAKGTD-DSCWGKQKLTENAKG 1478
D + G + S+ ++N S HQ G P +G S WG+ AK
Sbjct: 626 WDRNNPGIQSSTTTTSNSASAAEAPPAHQAGVEKRKNPKIRGCRVSSGWGEMPAVP-AKA 684
Query: 1479 TDDSSWGKQKHTEN-ESPQPASSNAW-DLP 1506
+SSWG P+S + W D P
Sbjct: 685 --ESSWGATSPPPALVDNXPSSGSGWGDQP 712
Score = 40 (19.1 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 1533 WASSSGEWKGKKNRPPRSPGVVNDDS 1558
W SSSG + + S G+V D+
Sbjct: 1456 WQSSSGTGQARLGASGGSHGLVRSDA 1481
>MGI|MGI:1343177 [details] [associations]
symbol:Calcoco2 "calcium binding and coiled-coil domain 2"
species:10090 "Mus musculus" [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0016605 "PML body" evidence=ISO]
[GO:0034341 "response to interferon-gamma" evidence=ISO]
[GO:0042803 "protein homodimerization activity" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
MGI:MGI:1343177 GO:GO:0005634 GO:GO:0005794 GO:GO:0005737
GO:GO:0048471 GO:GO:0005856 EMBL:AL603682 GO:GO:0034341
InterPro:IPR012852 Pfam:PF07888 GeneTree:ENSGT00530000063216
CTD:10241 eggNOG:NOG87904 OrthoDB:EOG42RD89 EMBL:AF490344
EMBL:AK010816 EMBL:AK166710 EMBL:AK166756 EMBL:AK167172
IPI:IPI00655039 IPI:IPI00857904 IPI:IPI00875149 IPI:IPI00877285
IPI:IPI00877295 RefSeq:NP_001257947.1 UniGene:Mm.296049
PRIDE:A2A6M5 DNASU:76815 Ensembl:ENSMUST00000068686 GeneID:76815
KEGG:mmu:76815 UCSC:uc007lbh.1 HOGENOM:HOG000111284
InParanoid:A2A6M5 OMA:ASWEEEK NextBio:345877 Bgee:A2A6M5
CleanEx:MM_CALCOCO2 Genevestigator:A2A6M5 Uniprot:A2A6M5
Length = 331
Score = 129 (50.5 bits), Expect = 0.00011, P = 0.00011
Identities = 40/150 (26%), Positives = 62/150 (41%)
Query: 1135 EHNLCSDKPVFEDLVEDQSWLENK----QENANWDSEADCRKSSEDKWEKLGTSLEKPSS 1190
EH + +K +E E SW E K +E A+W+ E + + WE+ S E+ +
Sbjct: 183 EHKV-EEKASWEK--EKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKA 239
Query: 1191 GWRTEGA-WGKSSDDKLEKAGSPSRKPSGWGTE-ASWGESSCDKWENVGSPAAKSFSEWG 1248
W E A W + E+ S + + W E ASW E WE + K + W
Sbjct: 240 SWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKAS-WEEEKASWEKEKASWE 298
Query: 1249 TE-ASWGKSFGDKPENVSPAAKTSSGWGSE 1277
E ASW K +P + + W ++
Sbjct: 299 EEKASWEKEKAPWEVEKAPWKEVKAYWWND 328
Score = 127 (49.8 bits), Expect = 0.00018, P = 0.00018
Identities = 41/166 (24%), Positives = 65/166 (39%)
Query: 1175 EDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTE-ASWGESSCDKW 1233
+DK+ L L++ K+ + K+E+ S ++ + W E ASW E W
Sbjct: 155 KDKYADLHEQLQRKQVALEATQRVNKTLEHKVEEKASWEKEKASWEEEKASWEEEKAS-W 213
Query: 1234 ENVGSPAAKSFSEWGTE-ASWGKSFGDKPENVSPAAKTSSGWGSE-ASWGKSSGDRQENV 1291
E + + + W E ASW + E + + + W E ASW + +E
Sbjct: 214 EEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEK 273
Query: 1292 GGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTE-ASW 1336
+ S KASW K EE + + K + W E A W
Sbjct: 274 ASWEEEKASWEEEKASWEKEKAS-WEEEKASWEKEKAPWEVEKAPW 318
Score = 122 (48.0 bits), Expect = 0.00065, P = 0.00065
Identities = 57/197 (28%), Positives = 81/197 (41%)
Query: 1119 EEVDGLEDEFDWSLSPEHNLCSDK--PVFEDLVEDQSWLENKQE-NANWDSEADCRKSSE 1175
EE++ L +E L ++ DK + E L Q LE Q N + + + K+S
Sbjct: 138 EEMEQLSEE----LYQQNQELKDKYADLHEQLQRKQVALEATQRVNKTLEHKVE-EKAS- 191
Query: 1176 DKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTE-ASWGESSCDKWE 1234
WEK S E+ + W E K+S ++ EKA K S W E ASW E WE
Sbjct: 192 --WEKEKASWEEEKASWEEE----KASWEE-EKASWEEEKAS-WEEEKASWEEEKAS-WE 242
Query: 1235 NVGSPAAKSFSEWGTE-ASWGKSFGDKPENVSPAAKTSSGWGSE-ASWGKSSGDRQENVG 1292
+ + + W E ASW + E + + + W E ASW K +E
Sbjct: 243 EEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEKEKASWEEEKA 302
Query: 1293 GSASKPLSGWGA-KASW 1308
S K + W KA W
Sbjct: 303 -SWEKEKAPWEVEKAPW 318
>TIGR_CMR|CJE_0529 [details] [associations]
symbol:CJE_0529 "DNA-directed RNA polymerase, beta'
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
RefSeq:YP_178547.1 ProteinModelPortal:Q5HVY8 SMR:Q5HVY8
STRING:Q5HVY8 GeneID:3231290 KEGG:cjr:CJE0529 PATRIC:20042780
OMA:VIAEWDP BioCyc:CJEJ195099:GJC0-544-MONOMER Uniprot:Q5HVY8
Length = 1517
Score = 146 (56.5 bits), Expect = 0.00018, Sum P(5) = 0.00018
Identities = 66/279 (23%), Positives = 126/279 (45%)
Query: 340 IMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGD--CIHLFYPQ 397
++ G V +NR PT HK S+QA + + ++++PL+C +ADFDGD +H+ Q
Sbjct: 437 VVKGHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQ 496
Query: 398 SLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFAL 457
A+ +VL L S+ LL + ++ + + D +L + + L+KA +
Sbjct: 497 EAIAECKVLMLSSMNI-LLPASGKSVTVP-SQDMVLGIYYLS----LEKAGAKGSHKICT 550
Query: 458 SPLPRPALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKK---SEVLKGDFDRDTIPS 514
+++C ++Q + V + R +IK V + +++
Sbjct: 551 GIDEVMMALESKCLDIHASIQTM--VDGRKITTTAGRLIIKSILPDFVPENSWNKVLKKK 608
Query: 515 VINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSL---SKAALWNIQK 571
I +V ++ + G E F D L+ L E G S+S+ D + + A+ +K
Sbjct: 609 DIAALVDYVYKQGGLEITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKK 668
Query: 572 ---EIQALYSL-LYHRMSTQNELVDL-QIENHIRHVKML 605
EIQ Y+L L N+++D+ + N++ +M+
Sbjct: 669 QVREIQNSYNLGLITSGERYNKIIDIWKSTNNVLSKEMM 707
Score = 55 (24.4 bits), Expect = 0.00018, Sum P(5) = 0.00018
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 56 KCESCGTSEPGKC--EGHFGYIELPIPIYHPSHISEL 90
KCE CG G+IEL P+ H +++ L
Sbjct: 85 KCEKCGVEVANSKVRRSRMGHIELVTPVAHIWYVNSL 121
Score = 47 (21.6 bits), Expect = 0.00018, Sum P(5) = 0.00018
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 748 YAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVL 782
Y +N + + P GE VG+++A ++ P + L
Sbjct: 897 YGINLGEGKLVKP-GEAVGIISAQSIGEPGTQLTL 930
Score = 42 (19.8 bits), Expect = 0.00018, Sum P(5) = 0.00018
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 1631 GAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQD 1662
G G+D K K G + FVV D + ++
Sbjct: 1105 GDGLDRVKNVKKGDIVKEKGFFVVIADENDRE 1136
Score = 41 (19.5 bits), Expect = 0.00018, Sum P(5) = 0.00018
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 1434 WEDSSKPSANEKSIVHQIG-GWNVPD 1458
++ + NE SIV I GWNVP+
Sbjct: 1046 YQSGMQVEENE-SIVEVIKEGWNVPN 1070
>TAIR|locus:2035898 [details] [associations]
symbol:AT1G42430 "AT1G42430" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 IPI:IPI00525753 RefSeq:NP_174971.5
UniGene:At.39108 PRIDE:F4I9G2 DNASU:840847
EnsemblPlants:AT1G42430.1 GeneID:840847 KEGG:ath:AT1G42430
OMA:ANEKDWG Uniprot:F4I9G2
Length = 426
Score = 129 (50.5 bits), Expect = 0.00018, P = 0.00018
Identities = 60/223 (26%), Positives = 92/223 (41%)
Query: 1107 TGIEELDTGCLGEEVDGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENANWDS 1166
TG + DT + G+ +E DW + + ++ ED SW + D+
Sbjct: 111 TGPQSRDTP--PKRDTGIANEKDWGIDLLNENVNEAGTNED---GSSWFRESGHDLG-DN 164
Query: 1167 EADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSS-----DDKLEKAGSPSRKPSGWGT 1221
CR W ++G SS W TE W KS + +EK+G S S W T
Sbjct: 165 GYRCR------WSRMGGRSHDGSSEW-TETWWEKSDWTGYKELGVEKSGKNSEGDSWWET 217
Query: 1222 EASWGES-SCDKWENVG--SPAAKSFSEWGTE-ASWGKSFGDKPENVSPAAKTSSGWG-- 1275
W E D+W N+ +A+ ++ GTE A W + + +K + K + +G
Sbjct: 218 ---WQEVLHQDEWSNLARIERSAQKQAKSGTENAGWYEKWWEKYDAKGWTEKGAHKYGRL 274
Query: 1276 SEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEE 1318
+E SW + G+ + GS K W A+ G DK EE
Sbjct: 275 NEQSWWEKWGEHYDG-RGSVLKWTDKW-AETELGTKWGDKWEE 315
>TIGR_CMR|ECH_0951 [details] [associations]
symbol:ECH_0951 "DNA-directed RNA polymerase, beta'
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_507739.1 ProteinModelPortal:Q2GFP4
STRING:Q2GFP4 PRIDE:Q2GFP4 GeneID:3927754 KEGG:ech:ECH_0951
PATRIC:20577284 BioCyc:ECHA205920:GJNR-954-MONOMER Uniprot:Q2GFP4
Length = 1410
Score = 142 (55.0 bits), Expect = 0.00019, Sum P(4) = 0.00019
Identities = 74/340 (21%), Positives = 142/340 (41%)
Query: 103 NDGVAQRLLSSCCEVKEMLKRIPEETR--KKLAGKGYFPQDGYILEYLPV-PPNCLSVPD 159
N + L S+ E+K K+I + R + G P+ IL +P+ PP+ +
Sbjct: 198 NANLRVELESTTSEMKR--KKIVKRLRIVENFINSGNKPE-WMILTVIPILPPDLRPLVS 254
Query: 160 ISDGVSTMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGT 219
+ +G +S DL+ + + + + + P + E LQ AV +
Sbjct: 255 LENGRPAVS-DLNHHYRTIINRNNRLGKLLKLNPPAIMIRN-EKRMLQEAVDALFDSTRR 312
Query: 220 AKSSRDVDARFGVSQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPF 279
+ S + G + + K + R + K +S RSVI ++++ G+P
Sbjct: 313 SYVSNKAGS-VGYKKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKLHQCGLPK 371
Query: 280 EIAQRITFE----ERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQV 335
++A + F+ ++ ++ I +L NK+ + K + +V
Sbjct: 372 KMALEL-FKPFICSKLKMYGIVPTVKLA-NKMI-------------QNEKPEVWDILDEV 416
Query: 336 VHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFY 395
+H + +NR PT H+ +QA + + ++++PL+C +ADFDGD + +
Sbjct: 417 IHEH-----PILLNRAPTLHRLGIQAFDPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHI 471
Query: 396 PQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSL 435
P SL A+ E L +LS NG + + D +L +
Sbjct: 472 PLSLEAQLEARILMMSTNNILSPSNGKPIIVPSKDIVLGI 511
Score = 54 (24.1 bits), Expect = 0.00019, Sum P(4) = 0.00019
Identities = 21/101 (20%), Positives = 44/101 (43%)
Query: 516 INEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQA 575
I IV ++ G E +EF D L L + G S +D + ++ +
Sbjct: 606 ITSIVDLVYRSCGQSETVEFSDKLMSLGFKYASQSGISFGCKDMIIPDTKTMHVDNASEK 665
Query: 576 L--YSLLYHR-MSTQNELVDLQIENHIRHVKMLVAKFILKS 613
+ +++ Y + T++E + I+ + L+AK ++K+
Sbjct: 666 IKEFAVQYQDGLITRSERYNKVIDEWSKCTD-LIAKDMMKA 705
Score = 48 (22.0 bits), Expect = 0.00019, Sum P(4) = 0.00019
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRD-VVICYDGTVRN 737
F GL+ +E + R+ + ++ + G L + L+ V +D +V+ YD N
Sbjct: 759 FREGLNVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIVVEYDCKTHN 814
Score = 42 (19.8 bits), Expect = 0.00019, Sum P(4) = 0.00019
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 762 GEPVGVLAATAMSNP 776
GE VGV+AA ++ P
Sbjct: 908 GEAVGVIAAQSVGEP 922
>TIGR_CMR|SO_0225 [details] [associations]
symbol:SO_0225 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_715865.1 ProteinModelPortal:Q8EK73
SMR:Q8EK73 PRIDE:Q8EK73 GeneID:1168108 KEGG:son:SO_0225
PATRIC:23520143 Uniprot:Q8EK73
Length = 1405
Score = 155 (59.6 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 100/471 (21%), Positives = 195/471 (41%)
Query: 116 EVKEMLKRIPEETRKKLAGKGY-----FPQDG-----YILEYLPV-PPNCLSVPDISDGV 164
+++E L I ETR+K K F G IL+ LPV PP+ + + DG
Sbjct: 200 QMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILKVLPVLPPDLRPLVPL-DGG 258
Query: 165 STMSSDLSIAMLKKVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSR 224
+SDL+ + + + + R P+ + E LQ +V L+ + R
Sbjct: 259 RFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRN-EKRMLQESVDALLD---NGRRGR 314
Query: 225 DVDARFGVSQDPNSTTKAWLE----KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFE 280
+ G ++ P + ++ + R + K +S RSVIT R+++ G+P +
Sbjct: 315 AIT---GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKK 371
Query: 281 IAQRITFEERVNVHNINYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRI 340
+A + F+ + Y +L L T RE ++ L +V+
Sbjct: 372 MALEL-FKPFI------Y-GKLEGRGLATTIKAAKKMVE-REVAEVWDVL--DEVIREH- 419
Query: 341 MDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLA 400
V +NR PT H+ +QA + + ++++PL+C +ADFDGD + + P +L
Sbjct: 420 ----PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLE 475
Query: 401 AKAEVLELFSVEKQLLSSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPL 460
A+ E L +LS NG + + D +L L ++ + + + +++ +
Sbjct: 476 AQLEARALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRG--EGMYFMSVAEV 533
Query: 461 PRP-ALSKARCSARWTALQILQSVLPPGFDSCGDRYLIKK-------SEVLKGDFDRDTI 512
+ A A AR ++I ++++ + R ++ S++L D +
Sbjct: 534 EKAYATGAAELHAR-VKVRITETIIDENGERSEQRRIVDTTVGRALLSQILPAGLSFDLV 592
Query: 513 -----PSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLED 558
I++++ + + + G ++ + F D L G SV ++D
Sbjct: 593 NQNMGKKQISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDD 643
Score = 47 (21.6 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 723 VLRDVVICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNP 776
++R V+ C D T VC+ Y + + H + GE +GV+AA ++ P
Sbjct: 881 IVRSVITC-D-TDFGVCAAC-----YGRDLARGH-IINHGEAIGVVAAQSIGEP 926
Score = 45 (20.9 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 57 CESCGT--SEPGKCEGHFGYIELPIPIYH 83
CE CG ++ G+IEL P+ H
Sbjct: 85 CEKCGVEVTQTKVRRERMGHIELASPVAH 113
Score = 42 (19.8 bits), Expect = 0.00062, Sum P(4) = 0.00062
Identities = 14/65 (21%), Positives = 30/65 (46%)
Query: 683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYD--GTVRNVCS 740
F GL+ + + R+ + ++ + G L + L+ V +D+V+ D GT +
Sbjct: 763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTM 822
Query: 741 NSIIQ 745
+I+
Sbjct: 823 KPLIE 827
Score = 38 (18.4 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 1622 YHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDG 1658
+H A + ++ +V GS + +V +TDG
Sbjct: 935 FHIGGAASRASAENNVQVKNSGSLKLHNAKYVTNTDG 971
>SGD|S000003577 [details] [associations]
symbol:NSP1 "FG-nucleoporin component of central core of the
nuclear pore complex" species:4932 "Saccharomyces cerevisiae"
[GO:0005543 "phospholipid binding" evidence=IDA] [GO:0006606
"protein import into nucleus" evidence=IMP] [GO:0006607
"NLS-bearing substrate import into nucleus" evidence=IGI]
[GO:0005643 "nuclear pore" evidence=IEA;IDA] [GO:0000055 "ribosomal
large subunit export from nucleus" evidence=IMP] [GO:0000056
"ribosomal small subunit export from nucleus" evidence=IMP]
[GO:0017056 "structural constituent of nuclear pore"
evidence=IEA;IDA] [GO:0044613 "nuclear pore central transport
channel" evidence=IDA] [GO:0005487 "nucleocytoplasmic transporter
activity" evidence=IPI] [GO:0044615 "nuclear pore nuclear basket"
evidence=IDA] [GO:0034399 "nuclear periphery" evidence=IDA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=ISM] [GO:0031965
"nuclear membrane" evidence=IEA] [GO:0097064 "ncRNA export from
nucleus" evidence=IMP] [GO:0006409 "tRNA export from nucleus"
evidence=IMP] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IGI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
InterPro:IPR007758 InterPro:IPR026010 Pfam:PF05064 SGD:S000003577
EMBL:BK006943 GO:GO:0005543 GO:GO:0031965 GO:GO:0007049
eggNOG:NOG12793 GO:GO:0000056 GO:GO:0000055 GO:GO:0006607
TCDB:9.A.14.1.1 GO:GO:0006409 GO:GO:0016973 RefSeq:NP_012494.3
GeneID:853409 KEGG:sce:YJL041W PDB:1O6O PDBsum:1O6O
RefSeq:NP_012497.3 GeneID:853414 KEGG:sce:YJL037W GO:GO:0017056
PANTHER:PTHR12084 GO:GO:0044615 OMA:GAKKDDE OrthoDB:EOG4578H2
GO:GO:0044613 EMBL:M37160 EMBL:Z49316 EMBL:Z49314 PIR:S14055
ProteinModelPortal:P14907 SMR:P14907 DIP:DIP-1484N IntAct:P14907
MINT:MINT-405423 STRING:P14907 PaxDb:P14907 PeptideAtlas:P14907
EnsemblFungi:YJL041W CYGD:YJL041w GeneTree:ENSGT00700000105429
HOGENOM:HOG000000808 EvolutionaryTrace:P14907 NextBio:973915
Genevestigator:P14907 GermOnline:YJL041W GO:GO:0005487
GO:GO:0097064 Uniprot:P14907
Length = 823
Score = 132 (51.5 bits), Expect = 0.00022, P = 0.00022
Identities = 99/406 (24%), Positives = 173/406 (42%)
Query: 1197 AWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKS 1256
++G SD+ KAG+ S+ +G + E D +N PA FS +G +++ K
Sbjct: 285 SFGAKSDEN--KAGATSKPAFSFGAKP---EEKKD--DNSSKPA---FS-FGAKSNEDKQ 333
Query: 1257 FGD-KPE---NVSPAAKTSSGWGSEA-SWGKSSGDRQENVGGSASKPLSGWGAKASWGKS 1311
G KP PA K ++ A S+G S ++++ G ASKP +GAK K+
Sbjct: 334 DGTAKPAFSFGAKPAEKNNNETSKPAFSFGAKSDEKKD---GDASKPAFSFGAKPDENKA 390
Query: 1312 SED---------KLEEV-ETTVAKPSSAWGTEASWDK---SSEVTLEKVAAPAENPLSGW 1358
S K EE + +KP+ ++G +++ DK +++ A PAE +
Sbjct: 391 SATSKPAFSFGAKPEEKKDDNSSKPAFSFGAKSNEDKQDGTAKPAFSFGAKPAEKNNNET 450
Query: 1359 GTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKA--SWKTKALDKLDDVGSAV 1416
A G SD + D + S+G E+ +K S+ TK+ +K D GS+
Sbjct: 451 SKPAFSFGAKSDEKKDGDASKPAFSFGAKSDEKKDSDSSKPAFSFGTKSNEKKDS-GSSK 509
Query: 1417 ENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDDSCWGKQKLTENA 1476
S +GA+ D K ++ SKP+ + G + K +D+S K + +
Sbjct: 510 PAFS--FGAKPD--EKKNDEVSKPAFSF--------GAKANEKKESDES---KSAFSFGS 554
Query: 1477 K--GTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWA 1534
K G ++ K + P+ S+ P T G++ + + ++ + K+
Sbjct: 555 KPTGKEEGDGAKAAISFGAKPEEQKSSDTSKPAFTFGAQKDNEK--KTEESSTGKSTADV 612
Query: 1535 SSSGEWKGKKNRPPRSPGVVNDDSTVNAMYTV-TRQRLDMFTSEEQ 1579
SS K ++P V D+ T++ + T T Q + + EQ
Sbjct: 613 KSSDSLK-LNSKPVELKPVSLDNKTLDDLVTKWTNQLTESASHFEQ 657
>SGD|S000004784 [details] [associations]
symbol:DDR48 "DNA damage-responsive protein" species:4932
"Saccharomyces cerevisiae" [GO:0016887 "ATPase activity"
evidence=IDA] [GO:0006950 "response to stress" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IMP;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
SGD:S000004784 GO:GO:0005737 GO:GO:0003924 GO:GO:0006281
GO:GO:0016887 EMBL:BK006946 EMBL:Z49808 EMBL:M36110 EMBL:S73336
PIR:S55120 RefSeq:NP_013897.1 ProteinModelPortal:P18899
DIP:DIP-4424N IntAct:P18899 MINT:MINT-546743 STRING:P18899
PaxDb:P18899 PeptideAtlas:P18899 EnsemblFungi:YMR173W GeneID:855210
KEGG:sce:YMR173W eggNOG:NOG301978 GeneTree:ENSGT00550000074777
HOGENOM:HOG000000764 OMA:YGSNNRS OrthoDB:EOG4B5SG4 NextBio:978711
Genevestigator:P18899 GermOnline:YMR173W Uniprot:P18899
Length = 430
Score = 128 (50.1 bits), Expect = 0.00023, P = 0.00023
Identities = 81/367 (22%), Positives = 138/367 (37%)
Query: 1202 SDDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKP 1261
S+ + S + G S+G ++ D + GS S+ + S+G + D
Sbjct: 65 SNTSINDNDSNNNDSYGSNNNDSYGSNNNDSY---GSNNNDSYGSNNND-SYGSN-NDDS 119
Query: 1262 ENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVET 1321
S K+S G ++ S+G S+ + GS + G S+G +++D
Sbjct: 120 YGSSNKKKSSYGSNNDDSYGSSNNNDSY---GSNNNDSYGSNNNDSYGSNNDDSYGSSN- 175
Query: 1322 TVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDS-GKSSDWSEWKDHANA 1380
K S++G+ D S + + S +G+ DS G ++D S +N
Sbjct: 176 ---KNKSSYGSNN--DDSYGSNNDDSYGSSNKKKSSYGSSNNDSYGSNNDDSYG---SNN 227
Query: 1381 TASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKP 1440
S+G N + + K S D D GS+ N S +G+ D S G + +K
Sbjct: 228 NDSYGSNNDDSYGSSNKKKSSYGSNND--DSYGSSNNNDS--YGSNNDDSY-GSSNKNKS 282
Query: 1441 SANEKSIVHQIGGWNVPDAKGTDD---SCWGKQKLTENAKGTDDSSWGKQKHTENESPQP 1497
S S G N D+ G+ + S +G DDS K +
Sbjct: 283 SYGSSSNDDSYGSSNNDDSYGSSNKKKSSYGSNNDDSYGSNNDDSYGSSNKKKSSYGSSN 342
Query: 1498 ASSNAWDLPDATGGSETEMQVWGQSRKEPF---KKNRGWASSSGEWKGKKNRPPRSPGVV 1554
S + D+ G S + +G + + + N + S++ + G NR S G
Sbjct: 343 NDSYGSNNDDSYGSSNKKKSSYGSNNDDSYGSSNNNDSYGSNNDDSYGSSNRNKNSYGSS 402
Query: 1555 NDDSTVN 1561
N S+ N
Sbjct: 403 NYGSSNN 409
Score = 127 (49.8 bits), Expect = 0.00030, P = 0.00030
Identities = 89/422 (21%), Positives = 169/422 (40%)
Query: 1158 KQENANWDSEADCRKSS--EDKWEKLGTSLEKPSSGWRTEGAWGKSSD----DKLEKAGS 1211
K EN + + KS ED+++K+ + + + S ++D + + GS
Sbjct: 31 KAENMIGEDRVNQFKSKIGEDRFDKMESKVRQQFSNTSINDNDSNNNDSYGSNNNDSYGS 90
Query: 1212 PSRKPSGWGTEASWGESSCDKW-----ENVGSPAAKSFSEWGTEASWGKSFGDKPENVSP 1266
+ G S+G ++ D + ++ GS K S +G+ S+G N S
Sbjct: 91 NNNDSYGSNNNDSYGSNNNDSYGSNNDDSYGSSNKKK-SSYGSNND--DSYGSSNNNDSY 147
Query: 1267 AAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKA--SWGKSSEDKLEEVETTVA 1324
+ + +GS + S G ++ GS++K S +G+ S+G +++D
Sbjct: 148 GSNNNDSYGSNNN--DSYGSNNDDSYGSSNKNKSSYGSNNDDSYGSNNDDSYGSSN---- 201
Query: 1325 KPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASW 1384
K S++G+ + D + + N +G+ DS SS+ + +N S+
Sbjct: 202 KKKSSYGSSNN-DSYGSNNDDSYGS---NNNDSYGSNNDDSYGSSNKKKSSYGSNNDDSY 257
Query: 1385 GRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGARED--FSTKGWEDSSKPSA 1442
G + + ++ G + S+ + +K GS+ N S + D + + + SS S
Sbjct: 258 GSSNNNDSYGSNNDDSYGSSNKNK-SSYGSS-SNDDSYGSSNNDDSYGSSNKKKSSYGSN 315
Query: 1443 NEKSIVHQIGGWNVPDAKGTDD---SCWGKQKLTENAKGTDDS--SWGKQKHT--ENESP 1495
N+ S G N D+ G+ + S +G DDS S K+K + N
Sbjct: 316 NDDSY-----GSNNDDSYGSSNKKKSSYGSSNNDSYGSNNDDSYGSSNKKKSSYGSNNDD 370
Query: 1496 QPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVN 1555
SSN D+ G + + K + + +S++ + G NR R+ +
Sbjct: 371 SYGSSNN---NDSYGSNNDDSYGSSNRNKNSYGSSNYGSSNNDDSYGSSNRGGRNQYGGD 427
Query: 1556 DD 1557
DD
Sbjct: 428 DD 429
Score = 123 (48.4 bits), Expect = 0.00082, P = 0.00081
Identities = 65/286 (22%), Positives = 125/286 (43%)
Query: 1150 EDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSS-GWRTEGAWGKSSDDKLEK 1208
+D NK +++ + D S+ D + G+S +K SS G ++G ++DD
Sbjct: 168 DDSYGSSNKNKSSYGSNNDDSYGSNND--DSYGSSNKKKSSYGSSNNDSYGSNNDDSY-- 223
Query: 1209 AGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAA 1268
GS + G + S+G S+ K + GS S+ S+G + D + +
Sbjct: 224 -GSNNNDSYGSNNDDSYGSSNKKK-SSYGSNNDDSYGSSNNNDSYGSNNDD---SYGSSN 278
Query: 1269 KTSSGWGSEA---SWGKSSGDRQENVGGSASKPLSGWGAKA--SWGKSSEDKLEEVETTV 1323
K S +GS + S+G S+ D GS++K S +G+ S+G +++D
Sbjct: 279 KNKSSYGSSSNDDSYGSSNNDDSY---GSSNKKKSSYGSNNDDSYGSNNDDSYGSSN--- 332
Query: 1324 AKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATAS 1383
K S++G+ + D + + + S +G+ DS SS+ ++ +N S
Sbjct: 333 -KKKSSYGSSNN-DSYGSNNDDSYGS-SNKKKSSYGSNNDDSYGSSNNND-SYGSNNDDS 388
Query: 1384 WGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDF 1429
+G + +NS + ++ + D D GS+ + +G +D+
Sbjct: 389 YGSSNRNKNSYGSS--NYGSSNND--DSYGSSNRGGRNQYGGDDDY 430
>DICTYBASE|DDB_G0287399 [details] [associations]
symbol:DDB_G0287399 species:44689 "Dictyostelium
discoideum" [GO:0005576 "extracellular region" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] dictyBase:DDB_G0287399
GO:GO:0005576 EMBL:AAFI02000100 eggNOG:NOG12793 RefSeq:XP_637288.1
EnsemblProtists:DDB0187468 GeneID:8626120 KEGG:ddi:DDB_G0287399
OMA:ETINIFH Uniprot:Q54KD5
Length = 486
Score = 128 (50.1 bits), Expect = 0.00028, P = 0.00028
Identities = 79/302 (26%), Positives = 115/302 (38%)
Query: 1217 SGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGS 1276
SG G+ + G SS S S S G G+ S + SSG S
Sbjct: 41 SGSGSGSGGGSSSSGSGTGQSSGTVSSSGSASNNTSSGSQSGNASSGSSSGS--SSGSSS 98
Query: 1277 EASWGKSSGDRQENVG-GSASKPLSG-WGAKASWGKSSEDKLEEVETTVAKPSS--AWGT 1332
+S G SSG + N GS+S SG AS G SS + SS + GT
Sbjct: 99 GSSSGSSSGSQSGNASSGSSSSGSSGSQSGNASSGTSSGSSSSSGSSQSGNASSGPSSGT 158
Query: 1333 EASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATA--SWGRNGSE 1390
+S SS+ + + P SG + + S S SE +A++ S G S
Sbjct: 159 TSS-SGSSQSESSQSGNASSGPSSGTTSSSGSSQSESSQSESSQSGSASSGPSSGTTSSS 217
Query: 1391 ENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQ 1450
+S D+ + T + GS+ +SSS F+T G S S + S
Sbjct: 218 GSSQSDSSSFTTTGSQGSSGSSGSSQSDSSS-------FTTTG--SGSGSSQDSMSGSDS 268
Query: 1451 IGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATG 1510
+ G D+ DS G N+ G+ +S G ++ N P S+ + + G
Sbjct: 269 MSG---SDSMSGSDSMSGSSFTGGNSGGS--TSTGSGSYSGN--PSLTGSSEYSSSSSGG 321
Query: 1511 GS 1512
GS
Sbjct: 322 GS 323
>TIGR_CMR|NSE_0677 [details] [associations]
symbol:NSE_0677 "DNA-directed RNA polymerase, beta'
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 TIGRFAMs:TIGR02386 OMA:VIAEWDP
RefSeq:YP_506555.1 ProteinModelPortal:Q2GD91 SMR:Q2GD91
STRING:Q2GD91 PRIDE:Q2GD91 GeneID:3931848 KEGG:nse:NSE_0677
PATRIC:22681373 BioCyc:NSEN222891:GHFU-691-MONOMER Uniprot:Q2GD91
Length = 1375
Score = 153 (58.9 bits), Expect = 0.00030, Sum P(4) = 0.00030
Identities = 80/326 (24%), Positives = 142/326 (43%)
Query: 116 EVKEMLKRIPEETR--KKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSI 173
EVK+ K+I + R ++ G P D IL+ +PV P L + DG +SDL+
Sbjct: 212 EVKK--KKIIKTLRLVEQFLGSDSRPVD-MILDVIPVMPPDLRPLVMLDGGRFATSDLN- 267
Query: 174 AMLKKVLKQVEIIRSS-RSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGV 232
A+ + V+ + ++S PN E LQ AV + AK + + R
Sbjct: 268 ALYRSVINRNNRLKSLIYLKAPNIIINN-ERRMLQEAVDALFDNGRRAKVIKGSNKR--P 324
Query: 233 SQDPNSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVN 292
+ + K + R + K +S RSVI +++ G+P +IA
Sbjct: 325 YKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPALELHQCGLPKKIA---------- 374
Query: 293 VHNINYLQELVDNKLCLTYSDGSSSYSLR---EGSKGHTFLRPGQVVHRRIMDGDTVFIN 349
+ + + +KL L Y + + R + + + +V+H+ VF+N
Sbjct: 375 ---LELFKPFIYSKLEL-YGIAPTIKTARRMVQNEQPEVWDVLAKVIHQH-----PVFLN 425
Query: 350 RPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 409
R PT H+ S+QA + + ++++PL+C +ADFDGD + + P S+ A+ E L
Sbjct: 426 RAPTLHRLSVQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMSVHVPLSIEAQVEARLLV 485
Query: 410 SVEKQLLSSHNGNLNLQLATDALLSL 435
+L+ N + + D +L +
Sbjct: 486 MSTNNVLNPANSRPIIVPSKDIVLGV 511
Score = 49 (22.3 bits), Expect = 0.00030, Sum P(4) = 0.00030
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 57 CESCG---TSEPGKCEGHFGYIELPIPIYHPSHISELKLTM-YAFQLQIKN 103
CE CG TS + E G+IEL P+ H + L + L +KN
Sbjct: 85 CERCGVEVTSSRVRRE-RMGHIELASPVAHIWFLKSLPSKICILLDLTLKN 134
Score = 44 (20.5 bits), Expect = 0.00030, Sum P(4) = 0.00030
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 755 SHSLFPAGEPVGVLAATAMSNP 776
+ L GE VGV+AA ++ P
Sbjct: 888 NRKLVALGEAVGVIAAQSVGEP 909
Score = 37 (18.1 bits), Expect = 0.00030, Sum P(4) = 0.00030
Identities = 20/106 (18%), Positives = 46/106 (43%)
Query: 516 INEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQA 575
I+ +V ++ G + +EF D + L G S +D + ++++ +
Sbjct: 593 ISNLVDLVYKTCGHGKTVEFADGIMELGFRYATLSGISFGKDDMVVPPTKSEHVRRANEE 652
Query: 576 L--YSLLYHR-MSTQNELVDLQIENHIRHVKMLVAKFILKSSTLGY 618
+ Y Y + T++E + ++ + + LVAK ++ + GY
Sbjct: 653 VKEYEFQYQEGLITKHEKYN-KVVDAWQKCTDLVAKDMMDGIS-GY 696
>TAIR|locus:2034031 [details] [associations]
symbol:AT1G52000 "AT1G52000" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] EMBL:CP002684
GenomeReviews:CT485782_GR eggNOG:NOG12793 Gene3D:2.100.10.30
InterPro:IPR001229 Pfam:PF01419 SMART:SM00915 SUPFAM:SSF51101
EMBL:AC006216 HSSP:P18670 EMBL:AK226551 IPI:IPI00531879 PIR:F96559
RefSeq:NP_175612.1 UniGene:At.37684 UniGene:At.67811
ProteinModelPortal:Q9ZU23 SMR:Q9ZU23 PaxDb:Q9ZU23 PRIDE:Q9ZU23
EnsemblPlants:AT1G52000.1 GeneID:841629 KEGG:ath:AT1G52000
TAIR:At1g52000 InParanoid:Q9ZU23 OMA:GNGETEK Genevestigator:Q9ZU23
Uniprot:Q9ZU23
Length = 730
Score = 130 (50.8 bits), Expect = 0.00031, P = 0.00031
Identities = 88/357 (24%), Positives = 138/357 (38%)
Query: 1196 GAWGKSSD--DKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASW 1253
G G SS + ++ +P+ P G + D ++GS ++ GT +
Sbjct: 108 GFLGSSSHALNSIDAHFAPAPPPGSTGAKPGASGIGSDSG-SIGSAGTNPGAD-GTRETE 165
Query: 1254 GKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSE 1313
+ G KP S +A T+ G AS +G+ ++N GGS KP SG A + G S+
Sbjct: 166 KNAGGSKPS--SGSAGTNPG----AS-AVGNGETEKNAGGS--KPSSG-SAGTNPGASAG 215
Query: 1314 DKLEEVETTV--AKPSSAW-GTEASWDKSSEVTLEKVAAPAENPLSGWGTE--AQDSGKS 1368
E E V +KPSS GT + EK A +++ T A G
Sbjct: 216 GN-GETEKNVGGSKPSSGKAGTNPGANAGGNGGTEKNAGGSKSSSGSARTNPGASAGGNG 274
Query: 1369 SDWSEWKD-HANATASWGRNGSEEN-SGWDTKASWKTKALDKLDDVGSAVENSSSVWGAR 1426
S D +NA S +G+ SG ++ A T G + S G++
Sbjct: 275 ETVSNIGDTESNAGGSKSNDGANNGASGIESNAG-STGTNFGAGGTGGIGDTESDAGGSK 333
Query: 1427 EDFSTKGWED-SSKPSANEKSIVHQ--IGGWNVPDAKGTDDSCWGKQKLTENAKGTDDSS 1483
+ G D +S +N+ S GG + +GT+++ GK+ A G +S
Sbjct: 334 TNSGNGGTNDGASGIGSNDGSTGTNPGAGGGTDSNIEGTENNVGGKET-NPGASGIGNSD 392
Query: 1484 WGKQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEW 1540
G + SP+ SNA TGG E+ + P K + +W
Sbjct: 393 -G----STGTSPEGTESNADGTKTNTGGKESNTGSESNTNSSPQKLEAQGGNGGNQW 444
Score = 128 (50.1 bits), Expect = 0.00051, P = 0.00051
Identities = 88/339 (25%), Positives = 128/339 (37%)
Query: 1188 PSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGT---EASWGESSCDKWENVGSPAAKSF 1244
P S GA G SD GS P GT E + G S +P A +
Sbjct: 130 PGSTGAKPGASGIGSDSG--SIGSAGTNPGADGTRETEKNAGGSKPSSGSAGTNPGASAV 187
Query: 1245 SEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGW-- 1302
TE + G G KP S +A T+ G AS G +G+ ++NVGGS KP SG
Sbjct: 188 GNGETEKNAG---GSKPS--SGSAGTNPG----ASAG-GNGETEKNVGGS--KPSSGKAG 235
Query: 1303 ---GAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWG 1359
GA A +E +++ + G A + + + + A S G
Sbjct: 236 TNPGANAGGNGGTEKNAGGSKSSSGSARTNPGASAGGNGETVSNIGDTESNAGGSKSNDG 295
Query: 1360 TEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENS 1419
SG S+ + A + G +E ++G S D +GS N
Sbjct: 296 ANNGASGIESNAGSTGTNFGAGGTGGIGDTESDAGGSKTNSGNGGTNDGASGIGS---ND 352
Query: 1420 SSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNV-PDAKG---TDDSCWGKQKLTE- 1474
S G G DS N + + +GG P A G +D S + TE
Sbjct: 353 GST-GTNP--GAGGGTDS-----NIEGTENNVGGKETNPGASGIGNSDGSTGTSPEGTES 404
Query: 1475 NAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSE 1513
NA GT ++ GK+ +T +ES +S + GG++
Sbjct: 405 NADGTKTNTGGKESNTGSESNTNSSPQKLEAQGGNGGNQ 443
>UNIPROTKB|Q9KV29 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
PIR:G82336 RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 148 (57.2 bits), Expect = 0.00034, Sum P(5) = 0.00034
Identities = 51/196 (26%), Positives = 90/196 (45%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
+ R + K +S RSVIT Y R+++ G+P ++A + F+ + Y +L
Sbjct: 337 RFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL-FKPFI------Y-SKLETR 388
Query: 306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
L T RE + L +V+ V +NR PT H+ +QA
Sbjct: 389 GLATTIKAAKKMVE-REEAVVWDIL--DEVIREH-----PVLLNRAPTLHRLGIQAFEPV 440
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
+ + ++++PL+C +ADFDGD + + P +L A+ E L +LS +G+ +
Sbjct: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARTLMMSTNNILSPASGDPII 500
Query: 426 QLATDALLSLKVMFKK 441
+ D +L L M ++
Sbjct: 501 VPSQDVVLGLYYMTRE 516
Score = 46 (21.3 bits), Expect = 0.00034, Sum P(5) = 0.00034
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 748 YAVNARKSHSLFPAGEPVGVLAATAMSNP 776
Y + + H L GE VGV+AA ++ P
Sbjct: 899 YGRDLARGH-LVNQGEAVGVIAAQSIGEP 926
Score = 46 (21.3 bits), Expect = 0.00034, Sum P(5) = 0.00034
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 57 CESCGT--SEPGKCEGHFGYIELPIPIYH 83
CE CG ++ G+IEL P+ H
Sbjct: 85 CEKCGVEVTQTKVRRDRMGHIELASPVAH 113
Score = 44 (20.5 bits), Expect = 0.00034, Sum P(5) = 0.00034
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC-YD-GTVRNV 738
F GL+ + + R+ + ++ + G L + L+ V +DVV+ +D GT+ V
Sbjct: 763 FKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGV 820
Score = 42 (19.8 bits), Expect = 0.00034, Sum P(5) = 0.00034
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 1262 ENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDK 1315
ENV +G G + + QE G SA + A + G SS+D+
Sbjct: 1348 ENVIVGRLIPAGTGFAYHQDRQAKRAQEQQGPSAEQATDNLAALLNAGFSSDDE 1401
>TIGR_CMR|VC_0329 [details] [associations]
symbol:VC_0329 "DNA-directed RNA polymerase, beta' subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G82336
RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 148 (57.2 bits), Expect = 0.00034, Sum P(5) = 0.00034
Identities = 51/196 (26%), Positives = 90/196 (45%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
+ R + K +S RSVIT Y R+++ G+P ++A + F+ + Y +L
Sbjct: 337 RFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL-FKPFI------Y-SKLETR 388
Query: 306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVY 365
L T RE + L +V+ V +NR PT H+ +QA
Sbjct: 389 GLATTIKAAKKMVE-REEAVVWDIL--DEVIREH-----PVLLNRAPTLHRLGIQAFEPV 440
Query: 366 VHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNL 425
+ + ++++PL+C +ADFDGD + + P +L A+ E L +LS +G+ +
Sbjct: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARTLMMSTNNILSPASGDPII 500
Query: 426 QLATDALLSLKVMFKK 441
+ D +L L M ++
Sbjct: 501 VPSQDVVLGLYYMTRE 516
Score = 46 (21.3 bits), Expect = 0.00034, Sum P(5) = 0.00034
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 748 YAVNARKSHSLFPAGEPVGVLAATAMSNP 776
Y + + H L GE VGV+AA ++ P
Sbjct: 899 YGRDLARGH-LVNQGEAVGVIAAQSIGEP 926
Score = 46 (21.3 bits), Expect = 0.00034, Sum P(5) = 0.00034
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 57 CESCGT--SEPGKCEGHFGYIELPIPIYH 83
CE CG ++ G+IEL P+ H
Sbjct: 85 CEKCGVEVTQTKVRRDRMGHIELASPVAH 113
Score = 44 (20.5 bits), Expect = 0.00034, Sum P(5) = 0.00034
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 683 FFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVIC-YD-GTVRNV 738
F GL+ + + R+ + ++ + G L + L+ V +DVV+ +D GT+ V
Sbjct: 763 FKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGV 820
Score = 42 (19.8 bits), Expect = 0.00034, Sum P(5) = 0.00034
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 1262 ENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDK 1315
ENV +G G + + QE G SA + A + G SS+D+
Sbjct: 1348 ENVIVGRLIPAGTGFAYHQDRQAKRAQEQQGPSAEQATDNLAALLNAGFSSDDE 1401
>MGI|MGI:2443265 [details] [associations]
symbol:Tnrc6c "trinucleotide repeat containing 6C"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001706 "endoderm formation" evidence=IMP]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0007492 "endoderm
development" evidence=IMP] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0035162 "embryonic hemopoiesis" evidence=IMP]
[GO:0048568 "embryonic organ development" evidence=IMP] [GO:0060964
"regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000449 InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 Pfam:PF00627 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2443265 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 GO:GO:0031047 SUPFAM:SSF46934 GO:GO:0035162
GO:GO:0001706 GO:GO:0060964 InterPro:IPR019486 InterPro:IPR026805
PANTHER:PTHR31070 Pfam:PF10427 Pfam:PF12938 eggNOG:NOG318066
HOVERGEN:HBG062594 CTD:57690 ChiTaRS:TNRC6C EMBL:AK047249
EMBL:AK134064 EMBL:AK147471 EMBL:AK122529 IPI:IPI00337947
RefSeq:NP_932139.2 UniGene:Mm.40272 UniGene:Mm.473244
ProteinModelPortal:Q3UHC0 SMR:Q3UHC0 STRING:Q3UHC0
PhosphoSite:Q3UHC0 PaxDb:Q3UHC0 PRIDE:Q3UHC0 GeneID:217351
KEGG:mmu:217351 InParanoid:Q3UHC0 NextBio:375797 Bgee:Q3UHC0
CleanEx:MM_TNRC6C Genevestigator:Q3UHC0 Uniprot:Q3UHC0
Length = 1690
Score = 138 (53.6 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 82/344 (23%), Positives = 124/344 (36%)
Query: 1187 KPSSGWRTEGAWGKSS--DDKLEKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSF 1244
K S+GW + A ++ E S ++ S GT AS G S N GS +
Sbjct: 358 KGSTGWDSASAASQTPALQPGSEHMNSWAKATSS-GTTASEGSSDGSGNHNEGSTGREGT 416
Query: 1245 SEWGTEASWG---KSFGDKPEN-VSPAAKTSSGWGS-----EASWGKSSGDRQENVGGSA 1295
E G G + P N + P ++SGWG +W R E +
Sbjct: 417 GE-GRRRDKGVLDQGHIQLPRNDLDPRVLSNSGWGQTPVKQNTAWEFEESPRSERKNDNG 475
Query: 1296 SKPLSGWGAKA-----SWGKSSEDKLEEVETT-----VAKPSSAWGTEASWDKSSE---- 1341
++ WG+ A S GK+ + T+ V+ P +A SW S+
Sbjct: 476 TE---AWGSIATQPSNSGGKTDGSIMNSTNTSSVSGWVSSPPAAVPANTSWGDSNNKAPS 532
Query: 1342 ---VTLEKVAAPAENPL----SG--WGTEAQDSGKSSDWSEWKDHANATASWGRNGSEEN 1392
V + +++ A N SG W KS W E + +WG +G N
Sbjct: 533 GPGVWGDSISSTAVNNAAATKSGHAWSGTVNQEDKSPTWGE--PQKPKSQNWG-DGQRAN 589
Query: 1393 SGWDTKAS-WKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQI 1451
W T A W + L +G +N S W A + S GW D+++ +
Sbjct: 590 PAWSTGAGDWADSS-SVLGHLGDGKKNGSG-WDADGNRSGSGWNDATRCGTS-------- 639
Query: 1452 GGWNV-PDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENES 1494
GW +AK + WG E+ K +W + N S
Sbjct: 640 -GWGSGTNAKVNPGTNWG-----ESLKPGPQQNWAHKPQDNNVS 677
Score = 50 (22.7 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 23/84 (27%), Positives = 36/84 (42%)
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 787
V+ ++GTV +SI V+A + G PVG L A P A +S S
Sbjct: 111 VLGHEGTVATGNPSSICS---PVSAIGQNMGSQNGNPVGALGAWGNLLPQESAEPQTSTS 167
Query: 788 SNNSWELMKEILLCRVSFNNDPID 811
N S+ + + L N +P++
Sbjct: 168 QNVSFSVQPQNLNTDGPNNTNPMN 191
>UNIPROTKB|I3LUA8 [details] [associations]
symbol:TNRC6C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR015940 PROSITE:PS50030 GO:GO:0031047 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR026805 PANTHER:PTHR31070
Pfam:PF12938 Ensembl:ENSSSCT00000026949 Uniprot:I3LUA8
Length = 1472
Score = 145 (56.1 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 81/331 (24%), Positives = 121/331 (36%)
Query: 1211 SPSRKPSGWGTEAS----WGESSCDKWENVGSPAAKSFSEWGTEAS--------WGKSFG 1258
+P ++ + W E S SS W + A + + WG +S WG +
Sbjct: 397 TPVKQNTAWEFEESPRNSTNTSSVSGWVSSPPAAVPANTGWGDSSSKAPNGPGVWGDAIS 456
Query: 1259 DKPENVSPAAKTSSGWGSEAS-------WGKSSGDRQENVG-GSASKPLSGWGAKAS-WG 1309
+ AAK+ WG S W + R +N G G S P WGA W
Sbjct: 457 STAVTNAAAAKSGHAWGGTVSQEDKSPTWAEPQKPRSQNWGEGPKSNP--AWGAGGGDWA 514
Query: 1310 KSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSS 1369
+SS L + K S W E +S NP + WG E+ G
Sbjct: 515 ESSSVVLGHLGDG-KKGGSGWDAEXP--RSGPGGWGNGTHAKVNPGTSWG-ESLKPGPQQ 570
Query: 1370 DWSEWKDHANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGARE-- 1427
W+ K +T++WG E +GW+ + + ++DD SA + S+
Sbjct: 571 SWAS-KPQDASTSNWGX----EATGWEEPSPPSIRRKMEIDDGTSAWGDPSTYHNKTVNM 625
Query: 1428 -DFSTKGWEDSSKPSANEKSIV-----HQIGGWNVPDAK---GTD-DSCWGKQKLTENAK 1477
D + G + S+ ++N S HQ G + K G S WG+ AK
Sbjct: 626 WDRNNPGIQSSTTTTSNSASAAEAPPAHQAGVEKRKNPKISPGPSVPSGWGEMPAVP-AK 684
Query: 1478 GTDDSSWGKQKHTEN-ESPQPASSNAW-DLP 1506
+SSWG P+S + W D P
Sbjct: 685 A--ESSWGATSPPPALVDNXPSSGSGWGDQP 713
Score = 40 (19.1 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 1533 WASSSGEWKGKKNRPPRSPGVVNDDS 1558
W SSSG + + S G+V D+
Sbjct: 1442 WQSSSGTGQARLGASGGSHGLVRSDA 1467
>UNIPROTKB|Q9HCJ0 [details] [associations]
symbol:TNRC6C "Trinucleotide repeat-containing gene 6C
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IEA] [GO:0005829 "cytosol"
evidence=TAS] [GO:0007219 "Notch signaling pathway" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 InterPro:IPR000449
InterPro:IPR000504 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR026804 Pfam:PF00627 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0010467 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007219 GO:GO:0003723 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 GO:GO:0031047 SUPFAM:SSF46934
EMBL:AC021593 InterPro:IPR019486 InterPro:IPR026805
PANTHER:PTHR31070 Pfam:PF10427 Pfam:PF12938 PDB:2X04 PDB:3KTP
PDBsum:2X04 PDBsum:3KTP eggNOG:NOG318066 HOVERGEN:HBG062594
HOGENOM:HOG000049171 EMBL:AB046802 EMBL:AL834429 EMBL:BC045631
EMBL:AK056421 IPI:IPI00030572 IPI:IPI00043407 RefSeq:NP_001136112.1
RefSeq:NP_061869.2 UniGene:Hs.569831 PDB:2DKL PDBsum:2DKL
ProteinModelPortal:Q9HCJ0 SMR:Q9HCJ0 DIP:DIP-48569N STRING:Q9HCJ0
PhosphoSite:Q9HCJ0 DMDM:126253813 PaxDb:Q9HCJ0 PRIDE:Q9HCJ0
Ensembl:ENST00000301624 Ensembl:ENST00000541771 GeneID:57690
KEGG:hsa:57690 UCSC:uc002jud.2 UCSC:uc002juf.2 CTD:57690
GeneCards:GC17P076002 H-InvDB:HIX0014215 HGNC:HGNC:29318
HPA:HPA022007 MIM:610741 neXtProt:NX_Q9HCJ0 PharmGKB:PA134880671
InParanoid:Q9HCJ0 OrthoDB:EOG4BG8V9 ChiTaRS:TNRC6C
EvolutionaryTrace:Q9HCJ0 GenomeRNAi:57690 NextBio:64527
ArrayExpress:Q9HCJ0 Bgee:Q9HCJ0 CleanEx:HS_TNRC6C
Genevestigator:Q9HCJ0 Uniprot:Q9HCJ0
Length = 1690
Score = 145 (56.1 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 103/428 (24%), Positives = 148/428 (34%)
Query: 1187 KPSSGWRTEGAWGKSSDDKL--EKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSF 1244
K S+GW + ++ + E S ++ S GT AS G S N GS +
Sbjct: 358 KGSTGWESPSVTSQNPTVQPGGEHMNSWAKAASS-GTTASEGSSDGSGNHNEGSTGREGT 416
Query: 1245 SEWGTEASWG---KSFGDKPEN-VSPAAKTSSGWGS-----EASWGKSSGDRQE--NVGG 1293
E G G + P N + P +++GWG +W R E N G
Sbjct: 417 GE-GRRRDKGIIDQGHIQLPRNDLDPRVLSNTGWGQTPVKQNTAWEFEESPRSERKNDNG 475
Query: 1294 SASKPLSGWGAKASWGKSSEDKLEEVETT-----VAKPSSA------WGTEAS------- 1335
+ + + A S GK+ + T+ V P +A WG +
Sbjct: 476 TEAWGCAATQASNSGGKNDGSIMNSTNTSSVSGWVNAPPAAVPANTGWGDSNNKAPSGPG 535
Query: 1336 -WDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSG 1394
W S T AA A++ W A KS W E + WG +G N
Sbjct: 536 VWGDSISSTAVSTAAAAKSG-HAWSGAANQEDKSPTWGE--PPKPKSQHWG-DGQRSNPA 591
Query: 1395 WDTKAS-WKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGG 1453
W W + L +G +N S W A + S GW D+++ S N G
Sbjct: 592 WSAGGGDWADSS-SVLGHLGDGKKNGSG-WDADSNRSGSGWNDTTR-SGNS--------G 640
Query: 1454 W-NVPDAKGTDDSCWG---KQKLTEN--AKGTDD--SSWG-----KQKHTE-NESPQPAS 1499
W N + K + WG K +N +K D+ S+WG KQ T P P
Sbjct: 641 WGNSTNTKANPGTNWGETLKPGPQQNWASKPQDNNVSNWGGAASVKQTGTGWIGGPVPVK 700
Query: 1500 SNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDST 1559
D +ATG E + + E W S N R+ V+ +T
Sbjct: 701 QK--DSSEATGWEEPSPPSI-RRKMEIDDGTSAWGDPSNYNNKTVNMWDRNNPVIQSSTT 757
Query: 1560 VNAMYTVT 1567
N T T
Sbjct: 758 TNTTTTTT 765
Score = 41 (19.5 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 20/84 (23%), Positives = 32/84 (38%)
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 787
V+ ++GTV +SI A+ + G P G L A P +S S
Sbjct: 111 VLGHEGTVATGNPSSICSPVSAIGQNMGNQ---NGNPTGTLGAWGNLLPQESTEPQTSTS 167
Query: 788 SNNSWELMKEILLCRVSFNNDPID 811
N S+ + L N +P++
Sbjct: 168 QNVSFSAQPQNLNTDGPNNTNPMN 191
>TIGR_CMR|CHY_2317 [details] [associations]
symbol:CHY_2317 "DNA-directed RNA polymerase, beta'
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 InterPro:IPR012756
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 TIGRFAMs:TIGR02388 OMA:DINDKHI
ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 HOGENOM:HOG000218387
RefSeq:YP_361126.1 ProteinModelPortal:Q3A9Q8 SMR:Q3A9Q8
STRING:Q3A9Q8 PRIDE:Q3A9Q8 GeneID:3727667 KEGG:chy:CHY_2317
PATRIC:21277703 BioCyc:CHYD246194:GJCN-2316-MONOMER Uniprot:Q3A9Q8
Length = 1152
Score = 136 (52.9 bits), Expect = 0.00077, Sum P(6) = 0.00077
Identities = 49/177 (27%), Positives = 89/177 (50%)
Query: 246 KMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDN 305
+ R + K +S RSVI ++++ G+P E+A + F+ V +++LV
Sbjct: 326 RFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKEMALEL-FKPFV-------MKKLV-- 375
Query: 306 KLCLTYSDGSSSYSLREGSKGHTFLRPGQV--VHRRIMDGDTVFINRPPTTHKHSLQALS 363
+DG + ++++ + ++P +V V ++ V +NR PT H+ +QA
Sbjct: 376 ------ADGIA-HNIKSAKRMVERVKP-EVWDVLEEVIKEHPVLLNRAPTLHRLGIQAFE 427
Query: 364 VYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHN 420
+ + ++I+PL+C +ADFDGD + + P S A+AE L +LSSHN
Sbjct: 428 PVLVEGRAIQIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLL------MLSSHN 478
Score = 63 (27.2 bits), Expect = 0.00077, Sum P(6) = 0.00077
Identities = 52/225 (23%), Positives = 93/225 (41%)
Query: 559 FSLSKA-ALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKSSTLG 617
+ ++K+ A NIQ +I+ L + ++DL I+ + R ++ FI ST G
Sbjct: 688 YMMAKSGARGNIQ-QIRQLAGMRGLMADPSGRIIDLPIKANFREGLTVLEYFI---STHG 743
Query: 618 YLIXXXXXXXXXXXXXXXGFLGLQLSDRGKFYSKTLV--EDIASHFERIYPMDLNYPTAK 675
G+L +L D +V ED + + IY D+ T
Sbjct: 744 ---ARKGLADTALRTADSGYLTRRLVD---VCQDVIVREEDCGTE-DGIYVTDVKDGTDV 796
Query: 676 YGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEP---GTLFKNLMAV-LRDVVICY 731
++ G E++ H T E++V ++ ++E + N+ V +R V+ C
Sbjct: 797 IEKLEDRIL-GRVAAEDVVHP-ETGELLVAKNQEITEEIAEKIVSANIKKVKIRSVLTCR 854
Query: 732 DGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNP 776
T VC+ Y N ++S+ GE VG++AA ++ P
Sbjct: 855 --TRHGVCTRC-----YGRNLA-TNSIVDIGEAVGIIAAQSIGEP 891
Score = 42 (19.8 bits), Expect = 0.00077, Sum P(6) = 0.00077
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 57 CESCG---TSEPGKCEGHFGYIELPIPIYH 83
C+ CG T + E G+IEL P+ H
Sbjct: 75 CDRCGVEVTRSKVRRE-RLGHIELAAPVSH 103
Score = 40 (19.1 bits), Expect = 0.00077, Sum P(6) = 0.00077
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 516 INEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFSVSLEDFSLSK 563
+ +IVT + + G E+ D L+ L G ++ + D ++ K
Sbjct: 579 LGKIVTESYRKLGYEKTGYLLDGLKKLGFHYATKAGLTIGIVDITVPK 626
Score = 40 (19.1 bits), Expect = 0.00077, Sum P(6) = 0.00077
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 1509 TGGSETEMQVWGQSR-KEPFKKNR--GWA---SSSGEWKGKKNRPPRSPGVVNDDSTVNA 1562
TGG E G R +E F+ R G A G + + N+ R V+N ++
Sbjct: 902 TGGVAGEDITQGLPRVEELFEARRPKGQAIITEIDGVVEVRDNKGRREIEVINQETGERK 961
Query: 1563 MYTVTRQ-RLDMFTSEE 1578
+Y +T Q R+ + T ++
Sbjct: 962 VYPITYQARIKVQTGDK 978
Score = 37 (18.1 bits), Expect = 0.00077, Sum P(6) = 0.00077
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 1228 SSCDKWENVGSPAAKSFSEWGTE 1250
S D E VG AA+S E GT+
Sbjct: 872 SIVDIGEAVGIIAAQSIGEPGTQ 894
>UNIPROTKB|G3XAB8 [details] [associations]
symbol:TNRC6C "Trinucleotide repeat-containing gene 6C
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0001706 "endoderm formation" evidence=IEA] [GO:0035162
"embryonic hemopoiesis" evidence=IEA] [GO:0060964 "regulation of
gene silencing by miRNA" evidence=IEA] InterPro:IPR000449
InterPro:IPR000504 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR026804 Pfam:PF00627 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 EMBL:CH471099 GO:GO:0031047 SUPFAM:SSF46934
EMBL:AC021593 InterPro:IPR019486 InterPro:IPR026805
PANTHER:PTHR31070 Pfam:PF10427 Pfam:PF12938 RefSeq:NP_001136112.1
UniGene:Hs.569831 GeneID:57690 KEGG:hsa:57690 CTD:57690
HGNC:HGNC:29318 ChiTaRS:TNRC6C GenomeRNAi:57690 NextBio:64527
EMBL:AC015804 SMR:G3XAB8 Ensembl:ENST00000335749
Ensembl:ENST00000544502 Ensembl:ENST00000588847 OMA:WDADSNR
Uniprot:G3XAB8
Length = 1726
Score = 145 (56.1 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 103/428 (24%), Positives = 148/428 (34%)
Query: 1187 KPSSGWRTEGAWGKSSDDKL--EKAGSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSF 1244
K S+GW + ++ + E S ++ S GT AS G S N GS +
Sbjct: 358 KGSTGWESPSVTSQNPTVQPGGEHMNSWAKAASS-GTTASEGSSDGSGNHNEGSTGREGT 416
Query: 1245 SEWGTEASWG---KSFGDKPEN-VSPAAKTSSGWGS-----EASWGKSSGDRQE--NVGG 1293
E G G + P N + P +++GWG +W R E N G
Sbjct: 417 GE-GRRRDKGIIDQGHIQLPRNDLDPRVLSNTGWGQTPVKQNTAWEFEESPRSERKNDNG 475
Query: 1294 SASKPLSGWGAKASWGKSSEDKLEEVETT-----VAKPSSA------WGTEAS------- 1335
+ + + A S GK+ + T+ V P +A WG +
Sbjct: 476 TEAWGCAATQASNSGGKNDGSIMNSTNTSSVSGWVNAPPAAVPANTGWGDSNNKAPSGPG 535
Query: 1336 -WDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSG 1394
W S T AA A++ W A KS W E + WG +G N
Sbjct: 536 VWGDSISSTAVSTAAAAKSG-HAWSGAANQEDKSPTWGE--PPKPKSQHWG-DGQRSNPA 591
Query: 1395 WDTKAS-WKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGG 1453
W W + L +G +N S W A + S GW D+++ S N G
Sbjct: 592 WSAGGGDWADSS-SVLGHLGDGKKNGSG-WDADSNRSGSGWNDTTR-SGNS--------G 640
Query: 1454 W-NVPDAKGTDDSCWG---KQKLTEN--AKGTDD--SSWG-----KQKHTE-NESPQPAS 1499
W N + K + WG K +N +K D+ S+WG KQ T P P
Sbjct: 641 WGNSTNTKANPGTNWGETLKPGPQQNWASKPQDNNVSNWGGAASVKQTGTGWIGGPVPVK 700
Query: 1500 SNAWDLPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDST 1559
D +ATG E + + E W S N R+ V+ +T
Sbjct: 701 QK--DSSEATGWEEPSPPSI-RRKMEIDDGTSAWGDPSNYNNKTVNMWDRNNPVIQSSTT 757
Query: 1560 VNAMYTVT 1567
N T T
Sbjct: 758 TNTTTTTT 765
Score = 41 (19.5 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 20/84 (23%), Positives = 32/84 (38%)
Query: 728 VICYDGTVRNVCSNSIIQFDYAVNARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPS 787
V+ ++GTV +SI A+ + G P G L A P +S S
Sbjct: 111 VLGHEGTVATGNPSSICSPVSAIGQNMGNQ---NGNPTGTLGAWGNLLPQESTEPQTSTS 167
Query: 788 SNNSWELMKEILLCRVSFNNDPID 811
N S+ + L N +P++
Sbjct: 168 QNVSFSAQPQNLNTDGPNNTNPMN 191
>DICTYBASE|DDB_G0293562 [details] [associations]
symbol:DDB_G0293562 species:44689 "Dictyostelium
discoideum" [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0293562 EMBL:AAFI02000218 eggNOG:NOG253936
InterPro:IPR014898 Pfam:PF08790 RefSeq:XP_629009.1
ProteinModelPortal:Q54BM0 EnsemblProtists:DDB0192009 GeneID:8629293
KEGG:ddi:DDB_G0293562 InParanoid:Q54BM0 OMA:ECASTVI
ProtClustDB:CLSZ2846558 Uniprot:Q54BM0
Length = 527
Score = 124 (48.7 bits), Expect = 0.00087, P = 0.00087
Identities = 78/392 (19%), Positives = 147/392 (37%)
Query: 1109 IEELDTGCLGEEVDGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENANWDSEA 1168
+E D+ EDE ++ K V VE + K+E+++ DS
Sbjct: 150 VESSDSSDSDSSDSSSEDE---KKKKDNKKVETKKVETKKVETKKVETKKEESSDSDSSD 206
Query: 1169 DCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGES 1228
SSE + E + + E + +SS+ + E ++K E+S +S
Sbjct: 207 SDSSSSESESEDEKKKKDTKKVEIKKEESESESSESESEDENKDNKKVGTKKEESSDSDS 266
Query: 1229 SCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQ 1288
S + E+ K+ + EA +S + E+ S ++ +SS SE+ +S +++
Sbjct: 267 SSSESESEDEKKKKNNKK--VEAKKEESSDSESESESESSSSSSSSSSES---ESEDEKK 321
Query: 1289 ENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSE------V 1342
+ G S +S ED+ ++E K + +E+S SSE +
Sbjct: 322 KKDSKKVETKKEGSSDSESSSESVEDEKMDIEKVEIKKEESSDSESSSPASSESKEEEKM 381
Query: 1343 TLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKASWK 1402
+EK E S ++ KS D ++ S + D K
Sbjct: 382 DIEKEETKKEESSSSSSESEEEQKKSKKEDSDSDESSEDEKKKEESSSSSESEDEKKKED 441
Query: 1403 TKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGT 1462
+ + + +D ++ SS ED K + SS S +EK + D+ +
Sbjct: 442 SDS-ESSEDEKKKEDSDSSSSSESEDEDKKKKDSSSSESESEKESDSSSSS-SESDSSSS 499
Query: 1463 DDSCWGKQKLTENAKGTDDSSWGKQKHTENES 1494
DS + ++ + SS + +E++S
Sbjct: 500 SDS-----DSSSSSSSSSSSSSSSESESESDS 526
>UNIPROTKB|F1MLT5 [details] [associations]
symbol:TNRC6C "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060964 "regulation of gene silencing by miRNA"
evidence=IEA] [GO:0035162 "embryonic hemopoiesis" evidence=IEA]
[GO:0001706 "endoderm formation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000449 InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 Pfam:PF00627 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 GO:GO:0031047 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 InterPro:IPR026805
PANTHER:PTHR31070 Pfam:PF10427 Pfam:PF12938 OMA:WDADSNR
EMBL:DAAA02049484 EMBL:DAAA02049485 IPI:IPI00690659
Ensembl:ENSBTAT00000061369 Uniprot:F1MLT5
Length = 1906
Score = 147 (56.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 70/272 (25%), Positives = 104/272 (38%)
Query: 1157 NKQENA-NWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGA-WGKSSDDKLEKAGSPSR 1214
N+++ + W A+ +K W G KP+ W G W SS L G +
Sbjct: 745 NQEDKSPTW---AEPQKPRSQNW---GDG-HKPNPAWSAGGGDWADSSS-VLGHLGEGKK 796
Query: 1215 KPSGWGTEAS-----WGE---SSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPEN--- 1263
SGW ++S W E S W N G+ A + GT SWG+S P+
Sbjct: 797 NASGWDADSSRSGSGWNEAPRSGTGGWGN-GTNAKVNP---GT--SWGESLKPGPQQNWA 850
Query: 1264 VSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTV 1323
P +SS WG AS K +G +GG W + S + + +
Sbjct: 851 SKPPDSSSSNWGGAASV-KQTGTGW--IGGPLPVKPKDTSEATGWEEPSPPSIRR-KMEI 906
Query: 1324 AKPSSAWGTEAS--------WDKS-----SEVTLEKVAAPAENPLSGWGTEAQDSGKSSD 1370
+SAWG ++ WD++ S + E P++ P S S SS
Sbjct: 907 DDGTSAWGDPSNYNNKTVNMWDRNNPGIQSSASAESRVHPSQGPQSS--VSPVPSSVSSG 964
Query: 1371 WSEWKD-HANATASWGRNGSEENSGWDTKASW 1401
W E + H+ A SWG + S + A+W
Sbjct: 965 WGEMPNVHSKAENSWGESSSPSTLVDNGTAAW 996
Score = 39 (18.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 769 AATAMSNPAYKAVLDSSPSSNNSWE 793
A +A N + AV NN+W+
Sbjct: 458 ALSAKQNGSSSAVQKEGNGGNNAWD 482
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1714 1682 0.00087 125 3 11 23 0.44 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 128
No. of states in DFA: 637 (68 KB)
Total size of DFA: 774 KB (2327 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 158.19u 0.13s 158.32t Elapsed: 00:00:08
Total cpu time: 158.25u 0.13s 158.38t Elapsed: 00:00:08
Start: Fri May 10 20:19:15 2013 End: Fri May 10 20:19:23 2013
WARNINGS ISSUED: 1