BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000292
(1713 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 72/163 (44%)
Query: 731 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 790
+G+ E AV +AL L G H A ++LA+V + A AL I
Sbjct: 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99
Query: 791 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 850
E+ LG DHP + +LAV Y + + A KRAL + G HP+ A N+
Sbjct: 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159
Query: 851 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 893
A++ + G Y +AL+ Q LGPD A + + +A
Sbjct: 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLA 202
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 4/184 (2%)
Query: 766 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYV 825
L + G + A ++AL+ E+ G DHPD LA+ Y + A +
Sbjct: 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92
Query: 826 KRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 885
AL + T G HP AAT N+A++ G A +AL+ +++LG DH
Sbjct: 93 NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152
Query: 886 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD---LRTQDAAAWLEYFESKAF 942
A + +A+ Y + Q L+I + KLGPDD +T++ A Y + F
Sbjct: 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASC-YLKQGKF 211
Query: 943 EQQE 946
+Q E
Sbjct: 212 KQAE 215
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 56/122 (45%)
Query: 730 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 789
D+ K +DA ALA G H A + LAV+ G + +A ++AL+I
Sbjct: 81 DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140
Query: 790 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 849
E+ LG DHPD K +LA+ E Y +RAL + GP PN A T N
Sbjct: 141 REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200
Query: 850 VA 851
+A
Sbjct: 201 LA 202
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 731 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 790
+GK ++A +AL V G H A + LA++ + G + + Y Q+AL+I
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183
Query: 791 ERELGLDHPDTMKSYGDLAVFYYR 814
+ +LG D P+ K+ +LA Y +
Sbjct: 184 QTKLGPDDPNVAKTKNNLASCYLK 207
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 68/157 (43%)
Query: 737 AVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796
AV +AL L G H A ++LA+V + +A AL I E+ LG
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 856
DHP + +LAV Y + + A KRAL + G HP+ A N+A++ +
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQN 139
Query: 857 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 893
G Y +AL+ LGPD A + + +A
Sbjct: 140 QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%)
Query: 730 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 789
D+ K ++A ALA G H A + LAV+ G + +A ++AL+I
Sbjct: 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114
Query: 790 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 849
E+ LG HPD K +LA+ E Y +RAL + GP PN A T N
Sbjct: 115 REKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174
Query: 850 VA 851
+A
Sbjct: 175 LA 176
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 17/189 (8%)
Query: 784 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 843
++AL+ E+ G DHPD LA+ Y + A + AL + T G HP
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 844 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 903
AAT N+A++ G A +AL+ +++LG H A +A+
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAE 144
Query: 904 LSVQHEQTTLQILRAKLGPDD-----------------LRTQDAAAWLEYFESKAFEQQE 946
+ + L+I +LGPDD + QDA + ++A E++
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204
Query: 947 AARNGTRKP 955
+ NG KP
Sbjct: 205 GSVNGDNKP 213
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 68/157 (43%)
Query: 737 AVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796
AV +AL L G H A ++LA+V + +A AL I E+ LG
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 856
DHP + +LAV Y + + A KRAL + G HP+ A N+A++ +
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN 139
Query: 857 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 893
G Y +AL+ LGPD A + + +A
Sbjct: 140 QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%)
Query: 730 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 789
D+ K ++A ALA G H A + LAV+ G + +A ++AL+I
Sbjct: 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114
Query: 790 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 849
E+ LG HPD K +LA+ E Y +RAL + GP PN A T N
Sbjct: 115 REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174
Query: 850 VA 851
+A
Sbjct: 175 LA 176
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 17/189 (8%)
Query: 784 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 843
++AL+ E+ G DHPD LA+ Y + A + AL + T G HP
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 844 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 903
AAT N+A++ G A +AL+ +++LG H A + +A+
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144
Query: 904 LSVQHEQTTLQILRAKLGPDD-----------------LRTQDAAAWLEYFESKAFEQQE 946
+ + L+I +LGPDD + QDA + ++A E++
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204
Query: 947 AARNGTRKP 955
+ NG KP
Sbjct: 205 GSVNGDNKP 213
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 24/146 (16%)
Query: 731 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 790
+G ++A+ Y KAL +A A+ L Y GD+++A Y QKAL+++
Sbjct: 14 QGDYDEAIEYYQKALE--------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 791 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 850
P + +++ +L YY+ + A++Y ++AL L P +A + N+
Sbjct: 66 --------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNL 109
Query: 851 AMMEEGLGNVHVALRYLHKALKCNQR 876
G+ A+ Y KAL+ + R
Sbjct: 110 GNAYYKQGDYDEAIEYYQKALELDPR 135
Score = 43.5 bits (101), Expect = 9e-04, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 24/156 (15%)
Query: 760 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 819
A A+ L Y GD+++A Y QKAL+++ P + +++ +L YY+ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYD 52
Query: 820 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 879
A++Y ++AL L P +A + N+ G+ A+ Y KAL+ + R
Sbjct: 53 EAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--- 101
Query: 880 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915
+A +++ + A Y ++++ Q L++
Sbjct: 102 -----SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 45.1 bits (105), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 759 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 818
+A A+ L Y GD+++A Y QKAL++ +P+ +++ +L YY+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------YPNNAEAWYNLGNAYYKQGDY 59
Query: 819 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 872
+ A++Y ++AL L +PN A + N+ G+ A+ Y KAL+
Sbjct: 60 DEAIEYYQKALEL--------YPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 759 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 818
+A A+ L Y GD+++A Y QKAL+++ P+ +++ +L YY+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDY 59
Query: 819 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 872
+ A++Y ++AL L PN A + N+ G+ A+ Y KAL+
Sbjct: 60 DEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 36.2 bits (82), Expect = 0.16, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 759 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 818
+A A+ L Y GD+ +A Y QKAL+++ P+ ++ +L YY+
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELD--------PNNASAWYNLGNAYYKQGDY 59
Query: 819 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 872
+ A++Y ++AL L PN A + G+ A+ KAL+
Sbjct: 60 QKAIEYYQKALEL--------DPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 35.4 bits (80), Expect = 0.29, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 759 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 818
+A A+ L Y GD+++A Y QKAL+++ P + +++ +L YY+
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDY 53
Query: 819 ELALKYVKRALYL 831
+ A++Y ++AL L
Sbjct: 54 DEAIEYYQKALEL 66
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 35.0 bits (79), Expect = 0.33, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 759 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 818
+A A+ L Y GD+++A Y QKAL+++ P+ +++ +L YY+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDY 59
Query: 819 ELALKYVKRALYL 831
+ A++Y ++AL L
Sbjct: 60 DEAIEYYQKALEL 72
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 771 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 830
Y DF QA Y +KA D+ E +L V YY+ Q E K +K+A
Sbjct: 17 YKEKDFTQAKKYFEKACDLKENSGCF----------NLGVLYYQGQGVE---KNLKKAAS 63
Query: 831 LLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKA 870
C ++ N N+ +G+ N + AL+Y KA
Sbjct: 64 FYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,899,516
Number of Sequences: 62578
Number of extensions: 1866035
Number of successful extensions: 4297
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4268
Number of HSP's gapped (non-prelim): 28
length of query: 1713
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1601
effective length of database: 7,964,601
effective search space: 12751326201
effective search space used: 12751326201
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)