Query 000292
Match_columns 1713
No_of_seqs 791 out of 3615
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:06:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1839 Uncharacterized protei 100.0 3E-106 7E-111 1025.2 41.0 868 4-949 187-1162(1236)
2 KOG1839 Uncharacterized protei 100.0 6.8E-44 1.5E-48 456.2 -2.6 934 3-1142 50-1011(1236)
3 PF13236 CLU: Clustered mitoch 100.0 3.1E-41 6.7E-46 378.8 9.7 197 159-378 1-218 (221)
4 PF12807 eIF3_p135: Translatio 100.0 2E-30 4.3E-35 281.6 14.1 147 544-691 2-169 (169)
5 KOG1840 Kinesin light chain [C 99.9 7.7E-24 1.7E-28 261.3 33.4 284 718-1002 199-484 (508)
6 KOG1840 Kinesin light chain [C 99.9 3.4E-20 7.4E-25 229.2 31.0 255 689-947 214-469 (508)
7 KOG4626 O-linked N-acetylgluco 99.8 2.2E-19 4.7E-24 214.7 18.5 241 716-1002 250-490 (966)
8 KOG4626 O-linked N-acetylgluco 99.8 2.1E-19 4.5E-24 214.9 13.0 239 718-1002 218-456 (966)
9 TIGR00990 3a0801s09 mitochondr 99.7 6.4E-15 1.4E-19 190.7 27.9 247 715-1002 328-576 (615)
10 KOG1130 Predicted G-alpha GTPa 99.7 2.6E-15 5.7E-20 173.9 18.6 279 716-1004 53-351 (639)
11 TIGR00990 3a0801s09 mitochondr 99.6 1.2E-13 2.5E-18 179.0 26.1 240 721-1000 163-499 (615)
12 KOG1130 Predicted G-alpha GTPa 99.6 2.6E-14 5.7E-19 165.7 15.4 273 718-1004 17-311 (639)
13 TIGR02521 type_IV_pilW type IV 99.5 4.9E-12 1.1E-16 139.3 26.0 170 716-915 29-198 (234)
14 KOG1126 DNA-binding cell divis 99.5 2.4E-13 5.2E-18 167.3 16.9 247 718-1002 353-625 (638)
15 PRK11788 tetratricopeptide rep 99.4 8E-12 1.7E-16 151.9 24.8 243 718-998 35-279 (389)
16 PRK11788 tetratricopeptide rep 99.4 2.2E-11 4.7E-16 148.1 26.4 243 717-998 68-312 (389)
17 PRK15174 Vi polysaccharide exp 99.4 2E-11 4.4E-16 159.2 25.7 247 718-1002 110-386 (656)
18 PRK11189 lipoprotein NlpI; Pro 99.4 4.8E-11 1E-15 141.5 25.7 226 732-999 40-267 (296)
19 KOG0547 Translocase of outer m 99.4 8E-10 1.7E-14 132.1 33.1 246 717-1002 325-571 (606)
20 COG3063 PilF Tfp pilus assembl 99.4 3E-11 6.5E-16 133.9 19.8 167 716-912 33-199 (250)
21 PRK15174 Vi polysaccharide exp 99.4 6.2E-11 1.4E-15 154.7 26.3 243 718-998 76-348 (656)
22 KOG1155 Anaphase-promoting com 99.3 8.2E-11 1.8E-15 139.8 23.3 190 725-947 337-526 (559)
23 PRK11447 cellulose synthase su 99.3 5.1E-11 1.1E-15 164.7 25.1 241 719-996 462-739 (1157)
24 TIGR02917 PEP_TPR_lipo putativ 99.3 1E-10 2.2E-15 154.4 26.8 175 717-915 21-222 (899)
25 PRK11447 cellulose synthase su 99.3 2.5E-10 5.4E-15 158.0 31.0 173 717-915 302-524 (1157)
26 KOG1126 DNA-binding cell divis 99.3 2.5E-11 5.5E-16 149.8 15.1 226 733-998 334-587 (638)
27 TIGR02917 PEP_TPR_lipo putativ 99.3 5.8E-10 1.3E-14 147.3 28.0 234 719-998 500-733 (899)
28 TIGR03302 OM_YfiO outer membra 99.3 5.2E-10 1.1E-14 127.3 23.5 176 717-912 32-229 (235)
29 PRK09782 bacteriophage N4 rece 99.3 4.1E-10 8.8E-15 151.2 25.2 235 717-1001 476-710 (987)
30 PRK12370 invasion protein regu 99.2 6.6E-10 1.4E-14 142.6 26.1 236 715-999 255-504 (553)
31 TIGR02521 type_IV_pilW type IV 99.2 5.8E-10 1.3E-14 122.8 22.1 204 756-997 27-232 (234)
32 COG3063 PilF Tfp pilus assembl 99.2 5.8E-10 1.2E-14 123.9 21.3 207 756-998 31-237 (250)
33 PRK12370 invasion protein regu 99.2 4.2E-10 9.1E-15 144.4 23.5 153 730-913 316-468 (553)
34 PRK04841 transcriptional regul 99.2 3.1E-09 6.8E-14 143.7 31.5 272 719-1002 453-765 (903)
35 PRK11189 lipoprotein NlpI; Pro 99.2 2.9E-09 6.2E-14 126.4 27.0 175 716-915 62-265 (296)
36 PF05303 DUF727: Protein of un 99.2 1.2E-11 2.7E-16 124.6 5.7 64 39-102 27-104 (108)
37 KOG1173 Anaphase-promoting com 99.2 2.3E-10 4.9E-15 139.0 17.1 209 718-999 312-520 (611)
38 KOG2003 TPR repeat-containing 99.2 7E-10 1.5E-14 130.1 20.2 214 733-994 471-686 (840)
39 PRK09782 bacteriophage N4 rece 99.2 9.9E-10 2.1E-14 147.6 24.7 231 721-999 512-742 (987)
40 KOG1155 Anaphase-promoting com 99.2 6.8E-10 1.5E-14 132.1 19.3 255 724-1024 268-522 (559)
41 KOG2003 TPR repeat-containing 99.2 1.5E-09 3.1E-14 127.5 20.6 236 718-998 419-656 (840)
42 KOG2002 TPR-containing nuclear 99.1 4.6E-09 1E-13 133.9 23.9 254 712-1000 301-562 (1018)
43 TIGR03302 OM_YfiO outer membra 99.1 7.7E-09 1.7E-13 117.8 23.2 181 756-996 29-231 (235)
44 KOG1941 Acetylcholine receptor 99.1 1.6E-08 3.5E-13 117.3 23.7 273 718-1000 83-363 (518)
45 KOG0547 Translocase of outer m 99.1 1.4E-08 3.1E-13 121.7 23.4 196 721-950 363-559 (606)
46 KOG1129 TPR repeat-containing 99.1 2.2E-09 4.9E-14 122.9 15.6 234 723-1002 228-463 (478)
47 PRK10049 pgaA outer membrane p 99.1 3.5E-08 7.6E-13 131.4 29.2 153 725-910 22-174 (765)
48 PRK10049 pgaA outer membrane p 99.0 4.2E-08 9E-13 130.7 29.0 246 718-998 49-340 (765)
49 KOG1941 Acetylcholine receptor 99.0 9.9E-09 2.2E-13 119.0 19.2 270 719-1002 7-280 (518)
50 PF14938 SNAP: Soluble NSF att 99.0 1.8E-08 3.9E-13 118.9 21.7 188 718-913 35-223 (282)
51 cd05804 StaR_like StaR_like; a 99.0 1.7E-08 3.6E-13 121.6 21.5 170 719-913 44-213 (355)
52 PF14938 SNAP: Soluble NSF att 99.0 1.2E-08 2.6E-13 120.3 19.8 173 736-915 2-184 (282)
53 PRK04841 transcriptional regul 99.0 1.2E-07 2.6E-12 128.4 30.1 192 722-918 413-605 (903)
54 PF13424 TPR_12: Tetratricopep 99.0 2.4E-09 5.2E-14 101.3 9.4 78 798-876 1-78 (78)
55 KOG1173 Anaphase-promoting com 99.0 1E-08 2.3E-13 124.9 17.0 173 718-915 346-518 (611)
56 KOG2002 TPR-containing nuclear 99.0 9E-08 1.9E-12 122.5 26.0 252 720-1001 272-529 (1018)
57 KOG1125 TPR repeat-containing 99.0 1.5E-08 3.3E-13 124.2 18.2 209 722-1002 289-532 (579)
58 PF13424 TPR_12: Tetratricopep 99.0 3.4E-09 7.4E-14 100.2 10.1 78 840-918 1-78 (78)
59 PF13429 TPR_15: Tetratricopep 98.9 1.5E-09 3.2E-14 127.3 8.7 233 722-999 12-245 (280)
60 KOG1129 TPR repeat-containing 98.9 7.8E-09 1.7E-13 118.5 12.8 190 718-944 256-445 (478)
61 KOG0624 dsRNA-activated protei 98.9 3.1E-07 6.6E-12 106.3 23.9 259 713-1000 33-373 (504)
62 KOG0550 Molecular chaperone (D 98.9 7.9E-08 1.7E-12 113.8 18.9 172 720-917 171-352 (486)
63 COG2956 Predicted N-acetylgluc 98.9 2.4E-07 5.3E-12 107.1 22.3 240 724-999 41-280 (389)
64 KOG1125 TPR repeat-containing 98.8 2.7E-08 5.9E-13 122.0 14.7 183 714-920 315-532 (579)
65 cd05804 StaR_like StaR_like; a 98.8 2.5E-07 5.4E-12 111.5 23.0 209 718-996 6-214 (355)
66 PRK15359 type III secretion sy 98.8 3.8E-08 8.2E-13 104.9 13.9 110 738-874 13-122 (144)
67 CHL00033 ycf3 photosystem I as 98.8 4.4E-08 9.5E-13 106.5 14.1 131 800-936 33-163 (168)
68 PRK15179 Vi polysaccharide bio 98.8 1.3E-07 2.9E-12 123.2 19.7 170 718-916 48-218 (694)
69 CHL00033 ycf3 photosystem I as 98.8 1.2E-07 2.6E-12 103.1 15.3 122 758-885 33-154 (168)
70 PF13429 TPR_15: Tetratricopep 98.8 7E-08 1.5E-12 113.2 14.5 234 719-998 45-278 (280)
71 TIGR00540 hemY_coli hemY prote 98.7 1.5E-06 3.2E-11 108.0 26.3 251 718-1002 118-404 (409)
72 PRK15179 Vi polysaccharide bio 98.7 2.3E-07 4.9E-12 121.1 19.0 135 716-874 84-218 (694)
73 TIGR00540 hemY_coli hemY prote 98.7 2.3E-06 5E-11 106.3 26.6 243 717-996 83-363 (409)
74 KOG2076 RNA polymerase III tra 98.7 3.9E-06 8.5E-11 107.5 28.7 171 717-914 138-308 (895)
75 PRK10747 putative protoheme IX 98.7 1.9E-06 4.1E-11 106.7 24.1 238 721-999 121-392 (398)
76 PRK10747 putative protoheme IX 98.7 2.3E-06 4.9E-11 106.0 24.7 243 717-1000 83-360 (398)
77 PRK10370 formate-dependent nit 98.7 6E-07 1.3E-11 100.9 17.3 120 731-874 52-174 (198)
78 KOG0548 Molecular co-chaperone 98.7 9.9E-07 2.1E-11 107.9 19.9 178 718-913 224-419 (539)
79 PRK15359 type III secretion sy 98.7 1.4E-07 3.1E-12 100.5 11.4 111 721-855 27-137 (144)
80 COG2956 Predicted N-acetylgluc 98.7 3.7E-06 7.9E-11 97.6 23.4 173 718-916 107-279 (389)
81 KOG4162 Predicted calmodulin-b 98.6 5.2E-06 1.1E-10 104.9 26.5 250 715-1001 475-787 (799)
82 KOG0553 TPR repeat-containing 98.6 2.5E-07 5.5E-12 106.8 13.2 124 714-861 77-200 (304)
83 PF13525 YfiO: Outer membrane 98.6 3.9E-06 8.4E-11 94.6 22.6 170 717-906 4-198 (203)
84 KOG1174 Anaphase-promoting com 98.6 3.7E-06 8E-11 99.7 22.6 250 718-1000 232-503 (564)
85 KOG0550 Molecular chaperone (D 98.6 5.5E-07 1.2E-11 106.9 14.7 203 706-937 37-249 (486)
86 PRK02603 photosystem I assembl 98.6 2.1E-06 4.5E-11 94.0 18.2 127 797-936 30-163 (172)
87 TIGR02552 LcrH_SycD type III s 98.6 1.1E-06 2.4E-11 91.2 15.1 103 756-874 13-115 (135)
88 PRK02603 photosystem I assembl 98.6 1.9E-06 4.1E-11 94.3 17.0 115 755-882 30-151 (172)
89 KOG0548 Molecular co-chaperone 98.5 2E-06 4.4E-11 105.3 18.3 199 716-939 255-471 (539)
90 PRK10866 outer membrane biogen 98.5 9.4E-06 2E-10 94.1 23.1 174 717-910 31-236 (243)
91 PRK15363 pathogenicity island 98.5 2E-06 4.3E-11 92.4 16.1 102 757-874 32-133 (157)
92 PRK10370 formate-dependent nit 98.5 9.2E-07 2E-11 99.4 14.0 120 773-916 52-174 (198)
93 PF12569 NARP1: NMDA receptor- 98.5 2.7E-05 5.8E-10 98.9 28.0 269 718-1009 4-346 (517)
94 PLN02789 farnesyltranstransfer 98.5 2.8E-05 6.2E-10 93.6 26.7 158 726-915 45-212 (320)
95 PRK14574 hmsH outer membrane p 98.5 4.8E-06 1E-10 110.7 21.8 172 718-927 34-205 (822)
96 PRK15363 pathogenicity island 98.5 3.1E-06 6.8E-11 90.8 16.1 102 715-832 32-133 (157)
97 TIGR02795 tol_pal_ybgF tol-pal 98.4 3.3E-06 7.2E-11 84.8 14.1 104 761-874 3-106 (119)
98 PLN03088 SGT1, suppressor of 98.4 2.1E-06 4.5E-11 104.9 14.8 97 719-831 3-99 (356)
99 PLN03218 maturation of RBCL 1; 98.4 3.6E-05 7.7E-10 105.2 27.7 168 720-913 509-676 (1060)
100 PF09976 TPR_21: Tetratricopep 98.4 1.4E-05 3E-10 85.2 18.8 137 716-871 9-145 (145)
101 TIGR02795 tol_pal_ybgF tol-pal 98.4 3.6E-06 7.9E-11 84.5 13.3 113 803-930 3-115 (119)
102 KOG1156 N-terminal acetyltrans 98.4 1.4E-05 3.1E-10 99.5 20.8 240 719-996 8-247 (700)
103 PLN03218 maturation of RBCL 1; 98.4 5.1E-05 1.1E-09 103.7 27.6 239 718-996 542-782 (1060)
104 PRK14720 transcript cleavage f 98.4 1.2E-05 2.5E-10 106.4 20.6 143 712-874 25-179 (906)
105 KOG2076 RNA polymerase III tra 98.4 3.5E-05 7.5E-10 99.1 23.4 171 718-914 173-344 (895)
106 PRK14720 transcript cleavage f 98.4 5E-06 1.1E-10 109.7 16.6 220 752-1000 23-255 (906)
107 TIGR02552 LcrH_SycD type III s 98.4 8.8E-06 1.9E-10 84.5 15.3 100 716-831 15-114 (135)
108 KOG0495 HAT repeat protein [RN 98.4 1.1E-05 2.4E-10 99.8 18.2 223 729-1002 629-851 (913)
109 COG5010 TadD Flp pilus assembl 98.3 6.5E-06 1.4E-10 93.9 15.0 156 722-909 70-225 (257)
110 PRK14574 hmsH outer membrane p 98.3 5.7E-05 1.2E-09 100.8 26.0 127 723-874 73-199 (822)
111 KOG1128 Uncharacterized conser 98.3 1.3E-05 2.8E-10 100.9 17.5 166 725-921 457-622 (777)
112 PLN03088 SGT1, suppressor of 98.3 5.7E-06 1.2E-10 101.0 14.2 96 763-874 5-100 (356)
113 KOG1585 Protein required for f 98.3 0.00044 9.5E-09 78.2 27.3 241 735-991 10-250 (308)
114 PLN03081 pentatricopeptide (PP 98.3 5E-05 1.1E-09 100.7 23.5 235 719-996 291-556 (697)
115 KOG0553 TPR repeat-containing 98.3 6.3E-06 1.4E-10 95.6 12.7 102 757-874 78-179 (304)
116 PF09976 TPR_21: Tetratricopep 98.3 4.9E-05 1.1E-09 81.0 18.5 123 772-913 23-145 (145)
117 KOG2376 Signal recognition par 98.2 8.6E-05 1.9E-09 92.0 22.3 218 718-997 12-253 (652)
118 KOG1174 Anaphase-promoting com 98.2 2.9E-05 6.2E-10 92.4 16.7 181 720-930 302-510 (564)
119 KOG2376 Signal recognition par 98.2 0.0005 1.1E-08 85.5 27.9 157 722-893 83-269 (652)
120 PLN02789 farnesyltranstransfer 98.2 4.9E-05 1.1E-09 91.5 19.1 183 717-939 70-266 (320)
121 PLN03081 pentatricopeptide (PP 98.2 6.3E-05 1.4E-09 99.8 21.9 196 762-993 292-487 (697)
122 PRK10866 outer membrane biogen 98.2 0.00018 3.8E-09 83.7 22.7 174 759-992 31-236 (243)
123 KOG1127 TPR repeat-containing 98.2 5.7E-05 1.2E-09 97.4 19.2 233 732-1002 472-705 (1238)
124 COG5010 TadD Flp pilus assembl 98.2 8.3E-05 1.8E-09 85.1 18.7 144 756-929 63-206 (257)
125 PF13525 YfiO: Outer membrane 98.2 0.00014 3E-09 82.1 20.5 143 759-916 4-171 (203)
126 COG4783 Putative Zn-dependent 98.1 0.00043 9.2E-09 84.9 25.2 132 758-913 304-435 (484)
127 COG4783 Putative Zn-dependent 98.1 0.00018 3.9E-09 88.1 21.7 168 719-939 307-474 (484)
128 KOG1585 Protein required for f 98.1 0.00015 3.3E-09 81.7 19.5 189 718-915 31-219 (308)
129 cd00189 TPR Tetratricopeptide 98.1 1.5E-05 3.2E-10 73.7 9.9 96 762-873 2-97 (100)
130 KOG0624 dsRNA-activated protei 98.1 0.00022 4.7E-09 83.4 21.2 144 755-915 33-184 (504)
131 PRK10153 DNA-binding transcrip 98.1 5.2E-05 1.1E-09 96.7 17.4 139 713-874 334-483 (517)
132 cd00189 TPR Tetratricopeptide 98.0 2.9E-05 6.4E-10 71.7 10.2 96 720-831 2-97 (100)
133 PLN03077 Protein ECB2; Provisi 98.0 0.00069 1.5E-08 92.1 27.3 27 969-995 692-718 (857)
134 PF13414 TPR_11: TPR repeat; P 98.0 1.8E-05 3.9E-10 73.0 8.3 65 759-831 2-67 (69)
135 KOG4162 Predicted calmodulin-b 98.0 0.0026 5.6E-08 81.4 29.6 148 718-876 393-545 (799)
136 KOG3617 WD40 and TPR repeat-co 98.0 0.0014 3E-08 83.2 26.1 150 718-872 819-995 (1416)
137 PF12688 TPR_5: Tetratrico pep 98.0 8.4E-05 1.8E-09 77.2 13.3 102 761-872 2-103 (120)
138 KOG0495 HAT repeat protein [RN 98.0 0.00071 1.5E-08 84.5 23.1 228 729-1005 561-790 (913)
139 PRK10803 tol-pal system protei 98.0 0.00011 2.3E-09 86.4 15.3 104 761-874 143-247 (263)
140 KOG3617 WD40 and TPR repeat-co 98.0 0.00044 9.6E-09 87.4 20.9 248 725-1001 807-1113(1416)
141 KOG0543 FKBP-type peptidyl-pro 98.0 0.00011 2.3E-09 88.7 15.2 108 716-831 206-320 (397)
142 KOG1127 TPR repeat-containing 98.0 0.0018 3.8E-08 84.3 26.6 188 799-1000 881-1070(1238)
143 PLN03077 Protein ECB2; Provisi 98.0 0.00067 1.5E-08 92.2 24.8 97 887-994 555-651 (857)
144 PF13414 TPR_11: TPR repeat; P 97.9 3.7E-05 7.9E-10 70.9 8.7 65 801-873 2-67 (69)
145 KOG0543 FKBP-type peptidyl-pro 97.9 9.8E-05 2.1E-09 88.9 13.8 106 761-874 209-321 (397)
146 PF12895 Apc3: Anaphase-promot 97.9 5.3E-05 1.2E-09 73.0 9.4 84 730-828 1-84 (84)
147 PRK11906 transcriptional regul 97.9 0.00045 9.8E-09 85.1 19.0 181 720-935 257-450 (458)
148 PRK10803 tol-pal system protei 97.9 0.00017 3.6E-09 84.7 14.9 105 802-916 142-247 (263)
149 KOG1128 Uncharacterized conser 97.9 0.00012 2.7E-09 92.5 14.2 234 725-1021 405-638 (777)
150 KOG2047 mRNA splicing factor [ 97.9 0.028 6E-07 71.0 33.6 201 696-915 369-579 (835)
151 KOG4340 Uncharacterized conser 97.8 0.00042 9E-09 79.9 16.2 162 729-914 21-206 (459)
152 PF12688 TPR_5: Tetratrico pep 97.8 0.00026 5.6E-09 73.6 13.4 102 803-914 2-103 (120)
153 COG0457 NrfG FOG: TPR repeat [ 97.8 0.0033 7.2E-08 66.2 22.0 173 718-916 59-232 (291)
154 PF12895 Apc3: Anaphase-promot 97.8 0.00012 2.6E-09 70.6 9.6 84 814-912 1-84 (84)
155 KOG3060 Uncharacterized conser 97.8 0.0024 5.2E-08 73.0 20.9 156 732-914 26-182 (289)
156 PRK10153 DNA-binding transcrip 97.8 0.00051 1.1E-08 87.8 17.6 139 760-926 339-488 (517)
157 KOG2300 Uncharacterized conser 97.8 0.0047 1E-07 75.5 24.2 251 728-993 285-552 (629)
158 COG3071 HemY Uncharacterized e 97.7 0.0067 1.5E-07 73.2 25.1 245 717-1002 83-362 (400)
159 KOG4555 TPR repeat-containing 97.7 0.0012 2.6E-08 68.4 15.4 102 718-831 43-144 (175)
160 KOG3060 Uncharacterized conser 97.7 0.015 3.3E-07 66.7 25.1 160 725-916 59-221 (289)
161 KOG1156 N-terminal acetyltrans 97.7 0.0019 4.1E-08 81.3 19.4 170 718-911 41-210 (700)
162 KOG3785 Uncharacterized conser 97.6 0.0011 2.4E-08 77.9 15.8 159 728-910 32-209 (557)
163 COG4785 NlpI Lipoprotein NlpI, 97.6 0.0028 6.1E-08 70.8 18.1 204 756-996 61-265 (297)
164 COG4105 ComL DNA uptake lipopr 97.6 0.007 1.5E-07 69.9 21.7 174 718-908 34-226 (254)
165 PF12569 NARP1: NMDA receptor- 97.6 0.0015 3.2E-08 83.5 17.8 145 759-921 193-340 (517)
166 COG1729 Uncharacterized protei 97.6 0.00044 9.6E-09 80.1 11.8 105 717-831 140-244 (262)
167 PF13432 TPR_16: Tetratricopep 97.6 0.00021 4.5E-09 65.3 7.3 60 722-789 1-60 (65)
168 PF13432 TPR_16: Tetratricopep 97.5 0.00026 5.5E-09 64.7 7.4 60 764-831 1-60 (65)
169 PF08631 SPO22: Meiosis protei 97.5 0.013 2.8E-07 69.6 23.1 142 728-874 3-151 (278)
170 KOG4555 TPR repeat-containing 97.5 0.0039 8.5E-08 64.8 15.4 101 762-874 45-145 (175)
171 KOG2300 Uncharacterized conser 97.5 0.0063 1.4E-07 74.4 19.5 200 726-942 331-539 (629)
172 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00043 9.4E-09 85.2 10.1 72 797-873 70-141 (453)
173 KOG1070 rRNA processing protei 97.4 0.0058 1.3E-07 82.0 20.7 164 725-914 1465-1628(1710)
174 KOG3616 Selective LIM binding 97.4 0.014 3.1E-07 73.3 22.6 281 710-998 653-1025(1636)
175 COG3071 HemY Uncharacterized e 97.4 0.03 6.5E-07 67.8 24.1 239 718-1000 118-393 (400)
176 KOG1586 Protein required for f 97.4 0.012 2.6E-07 66.7 19.5 140 766-913 40-181 (288)
177 KOG3785 Uncharacterized conser 97.4 0.028 6.1E-07 66.5 23.1 129 722-868 61-209 (557)
178 COG2909 MalT ATP-dependent tra 97.4 0.032 6.9E-07 73.1 25.8 264 719-993 416-684 (894)
179 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00057 1.2E-08 84.2 9.5 71 756-831 71-141 (453)
180 PF13374 TPR_10: Tetratricopep 97.4 0.00029 6.3E-09 58.2 4.9 42 801-842 1-42 (42)
181 KOG1586 Protein required for f 97.3 0.017 3.6E-07 65.6 19.9 178 720-907 36-216 (288)
182 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.0034 7.4E-08 77.6 15.9 116 726-868 177-292 (395)
183 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.0034 7.4E-08 77.6 15.7 119 765-910 174-292 (395)
184 PRK15331 chaperone protein Sic 97.3 0.0015 3.2E-08 71.1 10.9 101 714-830 33-133 (165)
185 COG1729 Uncharacterized protei 97.3 0.0024 5.3E-08 74.2 13.2 102 763-874 144-245 (262)
186 PRK11906 transcriptional regul 97.3 0.0055 1.2E-07 75.9 16.9 145 764-934 259-415 (458)
187 COG2909 MalT ATP-dependent tra 97.3 0.12 2.6E-06 68.1 29.2 190 718-918 458-650 (894)
188 PF13512 TPR_18: Tetratricopep 97.3 0.0037 8E-08 66.6 13.2 104 718-831 10-128 (142)
189 PF13374 TPR_10: Tetratricopep 97.3 0.00041 8.8E-09 57.3 4.9 42 759-800 1-42 (42)
190 COG0457 NrfG FOG: TPR repeat [ 97.3 0.02 4.2E-07 60.4 18.8 173 716-916 93-266 (291)
191 PF04733 Coatomer_E: Coatomer 97.2 0.002 4.3E-08 76.9 11.5 169 721-931 105-276 (290)
192 COG4785 NlpI Lipoprotein NlpI, 97.1 0.0057 1.2E-07 68.4 13.2 170 717-913 64-264 (297)
193 COG4700 Uncharacterized protei 97.1 0.065 1.4E-06 59.1 20.7 172 731-936 69-240 (251)
194 PRK15331 chaperone protein Sic 97.1 0.0032 6.9E-08 68.5 10.4 102 756-873 33-134 (165)
195 COG5159 RPN6 26S proteasome re 97.1 0.047 1E-06 63.3 19.9 259 722-995 7-312 (421)
196 KOG2047 mRNA splicing factor [ 97.0 0.013 2.7E-07 73.9 16.4 242 726-995 355-613 (835)
197 PF13512 TPR_18: Tetratricopep 97.0 0.0088 1.9E-07 63.8 13.0 105 760-874 10-129 (142)
198 PF10345 Cohesin_load: Cohesin 97.0 0.38 8.3E-06 63.4 31.0 155 757-919 56-212 (608)
199 KOG4234 TPR repeat-containing 97.0 0.0082 1.8E-07 66.5 12.8 106 715-831 92-197 (271)
200 COG4235 Cytochrome c biogenesi 97.0 0.017 3.7E-07 68.0 16.3 103 756-874 152-257 (287)
201 KOG1070 rRNA processing protei 96.9 0.019 4.1E-07 77.4 17.4 215 756-1002 1454-1668(1710)
202 KOG3616 Selective LIM binding 96.9 0.16 3.5E-06 64.5 24.0 193 803-998 662-912 (1636)
203 KOG4234 TPR repeat-containing 96.9 0.0087 1.9E-07 66.3 11.9 98 807-915 100-197 (271)
204 KOG4340 Uncharacterized conser 96.9 0.027 5.8E-07 65.6 16.1 173 721-909 47-264 (459)
205 PF10300 DUF3808: Protein of u 96.9 0.042 9.1E-07 70.0 19.8 177 729-925 199-386 (468)
206 KOG4648 Uncharacterized conser 96.9 0.0039 8.5E-08 73.2 9.6 98 718-831 97-194 (536)
207 COG4235 Cytochrome c biogenesi 96.9 0.011 2.5E-07 69.5 13.4 124 709-852 147-273 (287)
208 PF12968 DUF3856: Domain of Un 96.8 0.051 1.1E-06 56.0 15.6 121 758-879 5-135 (144)
209 PF04184 ST7: ST7 protein; In 96.8 0.091 2E-06 65.5 20.5 128 726-869 176-320 (539)
210 PF12968 DUF3856: Domain of Un 96.8 0.071 1.5E-06 54.9 16.3 119 718-837 9-135 (144)
211 PF13371 TPR_9: Tetratricopept 96.7 0.0073 1.6E-07 56.2 8.5 58 766-831 1-58 (73)
212 PF10345 Cohesin_load: Cohesin 96.7 0.46 1E-05 62.7 28.0 274 718-997 301-606 (608)
213 KOG2471 TPR repeat-containing 96.7 0.047 1E-06 67.1 16.9 116 718-834 240-367 (696)
214 PF13371 TPR_9: Tetratricopept 96.7 0.007 1.5E-07 56.3 8.1 59 808-874 1-59 (73)
215 PF09986 DUF2225: Uncharacteri 96.6 0.017 3.7E-07 66.1 12.4 99 815-914 90-193 (214)
216 COG4105 ComL DNA uptake lipopr 96.6 0.16 3.4E-06 59.1 19.8 144 760-915 34-196 (254)
217 PF09986 DUF2225: Uncharacteri 96.6 0.023 5E-07 65.1 12.9 101 730-831 89-194 (214)
218 KOG4642 Chaperone-dependent E3 96.6 0.01 2.2E-07 67.5 9.6 106 714-835 6-111 (284)
219 KOG4648 Uncharacterized conser 96.5 0.0095 2.1E-07 70.1 9.2 95 764-874 101-195 (536)
220 PF13281 DUF4071: Domain of un 96.4 0.26 5.5E-06 60.7 21.4 151 732-902 113-275 (374)
221 KOG1463 26S proteasome regulat 96.4 0.21 4.5E-06 59.6 19.5 262 719-996 49-315 (411)
222 PF14559 TPR_19: Tetratricopep 96.4 0.0074 1.6E-07 55.3 6.4 53 729-789 2-54 (68)
223 PF14559 TPR_19: Tetratricopep 96.4 0.0092 2E-07 54.7 6.7 54 770-831 1-54 (68)
224 PF10300 DUF3808: Protein of u 96.4 0.094 2E-06 66.9 17.9 136 731-885 246-388 (468)
225 COG4700 Uncharacterized protei 96.1 0.086 1.9E-06 58.2 13.5 132 721-874 92-223 (251)
226 KOG2796 Uncharacterized conser 96.1 0.097 2.1E-06 60.4 14.3 158 718-897 177-334 (366)
227 PF03704 BTAD: Bacterial trans 96.0 0.15 3.2E-06 54.3 14.9 113 719-839 7-133 (146)
228 PF04733 Coatomer_E: Coatomer 96.0 0.061 1.3E-06 64.4 12.9 139 719-886 132-273 (290)
229 KOG2610 Uncharacterized conser 95.9 0.15 3.2E-06 60.5 14.8 168 720-911 105-272 (491)
230 KOG1915 Cell cycle control pro 95.9 2.7 5.9E-05 52.3 25.6 246 721-996 76-350 (677)
231 PF10602 RPN7: 26S proteasome 95.8 0.17 3.6E-06 56.5 14.6 126 782-916 18-143 (177)
232 COG3898 Uncharacterized membra 95.8 2.5 5.3E-05 51.7 24.6 162 725-914 127-291 (531)
233 KOG3081 Vesicle coat complex C 95.8 0.76 1.6E-05 53.7 19.6 171 721-930 111-281 (299)
234 KOG4642 Chaperone-dependent E3 95.8 0.026 5.6E-07 64.4 7.7 99 763-877 13-111 (284)
235 KOG2041 WD40 repeat protein [G 95.7 2.7 5.8E-05 54.2 25.4 32 755-786 791-822 (1189)
236 KOG2796 Uncharacterized conser 95.7 0.6 1.3E-05 54.2 18.2 140 760-916 177-316 (366)
237 PF10602 RPN7: 26S proteasome 95.6 0.22 4.7E-06 55.5 14.4 129 737-874 15-143 (177)
238 PF03704 BTAD: Bacterial trans 95.6 0.23 4.9E-06 52.8 14.0 111 805-923 9-133 (146)
239 PF02259 FAT: FAT domain; Int 95.6 1.3 2.9E-05 53.4 22.3 253 719-1002 30-292 (352)
240 KOG2471 TPR repeat-containing 95.5 0.067 1.4E-06 65.8 10.6 130 759-897 239-380 (696)
241 PF04184 ST7: ST7 protein; In 95.5 0.21 4.6E-06 62.4 14.8 130 766-911 174-320 (539)
242 KOG3965 Uncharacterized conser 95.4 0.032 7E-07 59.0 6.3 57 39-95 58-128 (160)
243 KOG0551 Hsp90 co-chaperone CNS 95.3 0.084 1.8E-06 62.7 10.3 104 717-832 80-183 (390)
244 KOG3081 Vesicle coat complex C 95.3 1.5 3.1E-05 51.5 19.5 143 761-939 109-255 (299)
245 COG2976 Uncharacterized protei 95.0 0.65 1.4E-05 52.1 15.4 100 803-916 90-189 (207)
246 PF12862 Apc5: Anaphase-promot 94.9 0.33 7.1E-06 48.4 11.8 82 812-895 8-90 (94)
247 KOG0545 Aryl-hydrocarbon recep 94.8 0.28 6.2E-06 56.3 12.2 105 719-831 179-293 (329)
248 PF12862 Apc5: Anaphase-promot 94.8 0.28 6.1E-06 48.8 11.1 83 855-939 9-92 (94)
249 KOG1464 COP9 signalosome, subu 94.8 0.64 1.4E-05 53.9 14.9 181 730-918 39-223 (440)
250 KOG2610 Uncharacterized conser 94.7 1.4 3.1E-05 52.6 17.7 128 766-913 109-236 (491)
251 KOG1915 Cell cycle control pro 94.7 17 0.00037 45.8 27.1 185 720-913 209-431 (677)
252 COG2976 Uncharacterized protei 94.6 0.7 1.5E-05 51.9 14.4 101 760-874 89-189 (207)
253 KOG1464 COP9 signalosome, subu 94.6 1.3 2.9E-05 51.4 16.8 191 720-917 67-262 (440)
254 COG3118 Thioredoxin domain-con 94.6 1.3 2.8E-05 52.7 17.2 145 673-830 87-264 (304)
255 KOG0545 Aryl-hydrocarbon recep 94.6 0.31 6.6E-06 56.0 11.6 107 760-874 178-294 (329)
256 PF02259 FAT: FAT domain; Int 94.5 4.2 9E-05 49.2 22.5 132 714-857 142-305 (352)
257 PF08631 SPO22: Meiosis protei 94.3 0.92 2E-05 54.0 15.9 109 770-879 3-118 (278)
258 PF13176 TPR_7: Tetratricopept 94.3 0.087 1.9E-06 43.1 4.9 31 804-834 1-31 (36)
259 PF13176 TPR_7: Tetratricopept 94.0 0.1 2.3E-06 42.6 4.9 31 762-792 1-31 (36)
260 PF04910 Tcf25: Transcriptiona 94.0 2.7 5.9E-05 52.1 19.4 151 756-916 36-223 (360)
261 PF00515 TPR_1: Tetratricopept 93.9 0.1 2.2E-06 41.5 4.7 30 760-789 1-30 (34)
262 PF05843 Suf: Suppressor of fo 93.9 0.55 1.2E-05 56.0 12.9 134 762-916 3-137 (280)
263 PF00515 TPR_1: Tetratricopept 93.9 0.11 2.3E-06 41.4 4.8 30 802-831 1-30 (34)
264 PF06552 TOM20_plant: Plant sp 93.9 0.4 8.6E-06 53.2 10.6 79 756-835 21-106 (186)
265 PF11817 Foie-gras_1: Foie gra 93.8 10 0.00022 44.5 22.8 184 723-910 15-242 (247)
266 KOG0551 Hsp90 co-chaperone CNS 93.6 0.48 1E-05 56.6 11.2 106 757-874 78-183 (390)
267 COG0790 FOG: TPR repeat, SEL1 93.4 2.3 4.9E-05 50.5 16.9 144 719-900 74-236 (292)
268 PF07719 TPR_2: Tetratricopept 93.3 0.16 3.4E-06 40.1 4.7 30 760-789 1-30 (34)
269 COG5159 RPN6 26S proteasome re 93.2 2.7 5.8E-05 49.5 16.1 149 765-922 8-161 (421)
270 KOG0985 Vesicle coat protein c 92.6 9.1 0.0002 51.6 21.1 237 760-1056 1104-1363(1666)
271 PF13428 TPR_14: Tetratricopep 92.3 0.3 6.5E-06 41.6 5.3 42 761-810 2-43 (44)
272 PF08626 TRAPPC9-Trs120: Trans 92.2 6.6 0.00014 56.0 21.5 156 716-875 240-476 (1185)
273 KOG4322 Anaphase-promoting com 92.1 4.4 9.6E-05 50.2 16.7 189 718-913 273-469 (482)
274 PF07719 TPR_2: Tetratricopept 92.1 0.28 6E-06 38.6 4.7 32 968-999 1-32 (34)
275 PF13181 TPR_8: Tetratricopept 91.9 0.29 6.4E-06 38.7 4.6 31 760-790 1-31 (34)
276 KOG2053 Mitochondrial inherita 91.9 12 0.00025 50.3 21.1 118 729-874 20-137 (932)
277 PF13431 TPR_17: Tetratricopep 91.9 0.15 3.3E-06 41.3 3.0 34 782-823 1-34 (34)
278 KOG2041 WD40 repeat protein [G 91.9 6.6 0.00014 50.8 18.1 33 797-829 791-823 (1189)
279 KOG1550 Extracellular protein 91.8 1.9 4.1E-05 56.4 14.3 150 733-915 227-393 (552)
280 PF13181 TPR_8: Tetratricopept 91.6 0.38 8.2E-06 38.1 4.9 31 969-999 2-32 (34)
281 KOG1308 Hsp70-interacting prot 91.6 0.2 4.4E-06 60.0 4.7 98 718-831 114-211 (377)
282 PF12739 TRAPPC-Trs85: ER-Golg 91.5 13 0.00028 47.0 21.0 186 804-1009 210-409 (414)
283 KOG1550 Extracellular protein 91.4 4.2 9.2E-05 53.2 17.0 120 731-873 262-393 (552)
284 PF13281 DUF4071: Domain of un 91.2 10 0.00022 47.2 18.8 169 726-915 149-334 (374)
285 PF13428 TPR_14: Tetratricopep 91.2 0.39 8.5E-06 40.8 4.9 42 803-852 2-43 (44)
286 PF06552 TOM20_plant: Plant sp 91.2 0.97 2.1E-05 50.3 9.1 80 840-920 21-107 (186)
287 COG0790 FOG: TPR repeat, SEL1 91.2 6.5 0.00014 46.7 17.0 149 729-914 52-219 (292)
288 KOG1463 26S proteasome regulat 91.1 5.2 0.00011 48.3 15.4 227 766-1002 10-243 (411)
289 KOG0376 Serine-threonine phosp 91.0 0.19 4.1E-06 62.6 3.9 98 718-831 4-101 (476)
290 PF13431 TPR_17: Tetratricopep 90.8 0.21 4.5E-06 40.6 2.6 32 741-780 2-33 (34)
291 KOG2581 26S proteasome regulat 90.7 22 0.00048 44.1 20.3 151 718-874 126-277 (493)
292 PF12739 TRAPPC-Trs85: ER-Golg 90.6 9.1 0.0002 48.4 18.3 176 720-917 210-401 (414)
293 KOG4814 Uncharacterized conser 90.3 56 0.0012 42.8 24.0 103 762-874 356-458 (872)
294 COG3118 Thioredoxin domain-con 90.3 5.2 0.00011 47.8 14.5 128 765-906 139-292 (304)
295 PF04910 Tcf25: Transcriptiona 90.1 13 0.00028 46.3 18.6 148 718-874 40-223 (360)
296 KOG2053 Mitochondrial inherita 89.7 55 0.0012 44.4 24.1 162 724-910 49-214 (932)
297 PF05843 Suf: Suppressor of fo 89.6 2.3 5E-05 50.8 11.3 129 725-874 8-137 (280)
298 KOG4563 Cell cycle-regulated h 89.3 2.9 6.2E-05 50.9 11.5 63 715-777 38-100 (400)
299 PF11817 Foie-gras_1: Foie gra 88.8 4.2 9.2E-05 47.7 12.6 91 734-828 154-244 (247)
300 KOG1914 mRNA cleavage and poly 88.6 13 0.00028 47.5 16.7 175 718-915 286-464 (656)
301 KOG2561 Adaptor protein NUB1, 88.4 11 0.00024 46.9 15.6 74 804-877 210-300 (568)
302 KOG4322 Anaphase-promoting com 88.3 13 0.00028 46.3 16.2 179 753-938 266-449 (482)
303 PF08626 TRAPPC9-Trs120: Trans 88.2 16 0.00034 52.3 19.8 228 760-997 242-552 (1185)
304 KOG4014 Uncharacterized conser 88.1 9.1 0.0002 42.8 13.3 157 731-919 40-237 (248)
305 PF10579 Rapsyn_N: Rapsyn N-te 88.0 3.7 8.1E-05 39.9 9.2 72 717-793 5-76 (80)
306 KOG4014 Uncharacterized conser 87.9 11 0.00023 42.3 13.8 185 773-1005 40-241 (248)
307 smart00101 14_3_3 14-3-3 homol 87.8 54 0.0012 38.7 20.5 188 720-921 3-206 (244)
308 PF08424 NRDE-2: NRDE-2, neces 87.6 45 0.00098 40.8 20.7 152 756-915 15-183 (321)
309 KOG0376 Serine-threonine phosp 87.3 0.85 1.8E-05 57.1 5.7 94 765-874 9-102 (476)
310 PF11207 DUF2989: Protein of u 87.0 7.5 0.00016 44.3 12.4 68 794-866 133-200 (203)
311 PF10579 Rapsyn_N: Rapsyn N-te 87.0 5.1 0.00011 39.0 9.5 68 849-921 11-78 (80)
312 KOG0307 Vesicle coat complex C 86.9 4 8.8E-05 55.4 11.9 26 966-991 663-688 (1049)
313 KOG0985 Vesicle coat protein c 86.2 62 0.0013 44.3 21.3 165 720-917 1106-1310(1666)
314 COG3898 Uncharacterized membra 86.0 29 0.00062 43.0 17.1 158 727-913 197-356 (531)
315 PF08424 NRDE-2: NRDE-2, neces 85.7 36 0.00078 41.6 18.5 128 734-874 47-184 (321)
316 PF04781 DUF627: Protein of un 85.6 4.4 9.6E-05 41.9 8.9 102 724-831 2-107 (111)
317 PF00244 14-3-3: 14-3-3 protei 85.6 82 0.0018 37.0 23.8 183 720-921 3-204 (236)
318 PF07145 PAM2: Ataxin-2 C-term 85.5 0.45 9.8E-06 33.4 1.2 13 1515-1527 5-17 (18)
319 KOG3783 Uncharacterized conser 85.5 54 0.0012 42.3 19.8 188 717-916 302-521 (546)
320 PF09670 Cas_Cas02710: CRISPR- 85.1 23 0.00049 44.5 16.7 142 717-876 130-273 (379)
321 KOG2581 26S proteasome regulat 84.7 23 0.00049 44.0 15.5 139 768-915 134-276 (493)
322 KOG4814 Uncharacterized conser 84.5 42 0.00091 43.9 18.2 106 803-918 355-460 (872)
323 KOG0890 Protein kinase of the 84.4 18 0.00038 53.3 16.5 175 712-897 1664-1857(2382)
324 PF15015 NYD-SP12_N: Spermatog 84.3 11 0.00025 46.6 12.8 109 719-835 177-295 (569)
325 KOG1920 IkappaB kinase complex 83.7 12 0.00027 51.5 14.0 22 891-912 957-978 (1265)
326 KOG0686 COP9 signalosome, subu 83.0 12 0.00025 46.5 12.3 104 801-912 149-255 (466)
327 KOG3783 Uncharacterized conser 81.7 1.5E+02 0.0033 38.5 21.6 221 720-998 269-521 (546)
328 PF10516 SHNi-TPR: SHNi-TPR; 81.6 2.8 6E-05 35.3 4.6 36 760-795 1-36 (38)
329 COG5187 RPN7 26S proteasome re 81.5 35 0.00076 40.7 14.9 130 734-874 91-222 (412)
330 KOG1308 Hsp70-interacting prot 81.5 0.82 1.8E-05 55.0 2.0 90 768-873 122-211 (377)
331 KOG0687 26S proteasome regulat 81.3 30 0.00065 42.0 14.5 129 735-874 81-211 (393)
332 PF13174 TPR_6: Tetratricopept 81.3 2.1 4.6E-05 33.2 3.8 29 803-831 1-29 (33)
333 PF10516 SHNi-TPR: SHNi-TPR; 80.9 3 6.6E-05 35.0 4.6 36 887-922 2-37 (38)
334 KOG2114 Vacuolar assembly/sort 80.7 28 0.0006 46.7 15.1 37 754-790 362-398 (933)
335 PF10952 DUF2753: Protein of u 80.4 10 0.00022 39.9 9.1 73 763-835 4-83 (140)
336 PF04781 DUF627: Protein of un 80.3 22 0.00049 36.9 11.5 102 808-915 2-107 (111)
337 KOG1914 mRNA cleavage and poly 80.3 1.5E+02 0.0032 38.6 20.5 142 760-915 286-430 (656)
338 KOG1538 Uncharacterized conser 80.0 61 0.0013 42.4 17.2 160 723-910 590-771 (1081)
339 KOG0508 Ankyrin repeat protein 80.0 2.1 4.6E-05 53.1 4.8 132 721-855 248-390 (615)
340 PF13174 TPR_6: Tetratricopept 79.9 2.3 5.1E-05 33.0 3.5 28 762-789 2-29 (33)
341 smart00028 TPR Tetratricopepti 79.9 2.5 5.4E-05 30.9 3.6 29 803-831 2-30 (34)
342 KOG1924 RhoA GTPase effector D 79.5 5 0.00011 52.4 8.0 21 1417-1437 547-567 (1102)
343 KOG1538 Uncharacterized conser 79.2 92 0.002 40.9 18.4 52 851-913 780-831 (1081)
344 COG5187 RPN7 26S proteasome re 78.7 82 0.0018 37.9 16.6 133 775-918 90-224 (412)
345 KOG4507 Uncharacterized conser 78.7 16 0.00034 47.0 11.6 98 803-914 213-311 (886)
346 KOG0508 Ankyrin repeat protein 78.7 2.7 5.9E-05 52.3 5.1 135 761-898 246-391 (615)
347 smart00028 TPR Tetratricopepti 78.4 2.3 5E-05 31.1 3.0 29 761-789 2-30 (34)
348 PF09613 HrpB1_HrpK: Bacterial 78.3 22 0.00048 39.3 11.4 92 712-819 4-95 (160)
349 KOG4507 Uncharacterized conser 78.1 10 0.00022 48.6 9.7 100 761-874 213-313 (886)
350 KOG0687 26S proteasome regulat 77.5 54 0.0012 40.0 15.0 131 777-918 81-213 (393)
351 PF15015 NYD-SP12_N: Spermatog 77.1 38 0.00083 42.3 13.9 100 767-874 183-292 (569)
352 PF07079 DUF1347: Protein of u 76.3 2.4E+02 0.0051 36.2 27.1 135 716-869 377-520 (549)
353 PF09670 Cas_Cas02710: CRISPR- 76.2 64 0.0014 40.5 16.3 139 762-918 133-273 (379)
354 cd09239 BRO1_HD-PTP_like Prote 74.3 77 0.0017 39.6 16.2 57 694-751 91-156 (361)
355 cd09244 BRO1_Rhophilin Protein 72.9 1.7E+02 0.0037 36.5 18.5 41 711-751 99-148 (350)
356 PF11207 DUF2989: Protein of u 72.9 16 0.00035 41.7 9.0 65 753-822 134-198 (203)
357 KOG4521 Nuclear pore complex, 72.1 1.2E+02 0.0025 42.5 17.5 29 761-789 921-949 (1480)
358 PF04190 DUF410: Protein of un 72.0 2.2E+02 0.0048 33.9 22.4 148 718-873 10-170 (260)
359 KOG0686 COP9 signalosome, subu 72.0 15 0.00033 45.5 9.0 105 718-829 150-256 (466)
360 PF05053 Menin: Menin; InterP 71.8 37 0.0008 44.0 12.4 71 760-833 277-349 (618)
361 KOG1920 IkappaB kinase complex 71.7 99 0.0022 43.3 17.0 100 813-913 919-1026(1265)
362 PF10952 DUF2753: Protein of u 71.5 25 0.00054 37.2 9.1 73 805-877 4-83 (140)
363 KOG1497 COP9 signalosome, subu 70.9 2.2E+02 0.0047 35.0 17.6 72 842-914 101-172 (399)
364 PRK10941 hypothetical protein; 69.8 31 0.00067 41.3 10.9 79 802-893 181-259 (269)
365 KOG2422 Uncharacterized conser 69.1 3.1E+02 0.0067 36.1 19.5 76 839-914 279-370 (665)
366 cd09246 BRO1_Alix_like_1 Prote 68.8 2.3E+02 0.0051 35.3 18.7 58 694-751 87-153 (353)
367 KOG2561 Adaptor protein NUB1, 68.7 36 0.00078 42.6 11.1 120 803-923 164-304 (568)
368 KOG1497 COP9 signalosome, subu 68.5 1.8E+02 0.0039 35.6 16.4 28 882-909 99-126 (399)
369 smart00101 14_3_3 14-3-3 homol 68.5 43 0.00093 39.6 11.5 57 776-832 144-201 (244)
370 PRK13184 pknD serine/threonine 68.1 31 0.00067 47.8 11.7 108 728-847 485-592 (932)
371 KOG3807 Predicted membrane pro 68.1 1.6E+02 0.0034 36.1 15.7 96 725-830 191-303 (556)
372 cd09242 BRO1_ScBro1_like Prote 68.0 64 0.0014 40.0 13.6 57 694-750 83-148 (348)
373 COG4649 Uncharacterized protei 67.4 83 0.0018 35.4 12.4 99 802-913 94-194 (221)
374 KOG2908 26S proteasome regulat 67.3 3E+02 0.0066 34.1 18.0 93 812-907 85-178 (380)
375 TIGR02710 CRISPR-associated pr 67.2 95 0.0021 39.0 14.6 114 718-834 130-278 (380)
376 KOG0994 Extracellular matrix g 67.1 3.2E+02 0.007 38.4 19.7 20 855-874 1536-1555(1758)
377 KOG2422 Uncharacterized conser 67.0 2.1E+02 0.0046 37.5 17.5 151 755-916 279-449 (665)
378 PF04053 Coatomer_WDAD: Coatom 66.9 2E+02 0.0043 37.1 17.8 94 726-829 269-374 (443)
379 PF10373 EST1_DNA_bind: Est1 D 66.6 36 0.00077 39.9 10.7 62 779-856 1-62 (278)
380 PF05053 Menin: Menin; InterP 66.5 77 0.0017 41.2 13.6 71 803-876 278-350 (618)
381 PF10255 Paf67: RNA polymerase 66.0 9.1 0.0002 48.1 5.7 72 762-834 124-196 (404)
382 cd09240 BRO1_Alix Protein-inte 65.8 1.3E+02 0.0029 37.2 15.7 34 885-918 254-287 (346)
383 PF12309 KBP_C: KIF-1 binding 65.2 1.3E+02 0.0028 37.9 15.4 114 761-874 172-332 (371)
384 COG3947 Response regulator con 65.1 35 0.00076 41.0 9.7 78 718-803 279-356 (361)
385 KOG1310 WD40 repeat protein [G 64.8 22 0.00047 45.4 8.4 98 716-829 372-472 (758)
386 PF14853 Fis1_TPR_C: Fis1 C-te 63.9 39 0.00085 30.6 7.8 29 803-831 2-30 (53)
387 COG3629 DnrI DNA-binding trans 63.8 58 0.0013 39.2 11.5 155 764-926 44-227 (280)
388 TIGR02561 HrpB1_HrpK type III 63.8 57 0.0012 35.8 10.3 92 712-819 4-95 (153)
389 PF00244 14-3-3: 14-3-3 protei 63.1 55 0.0012 38.4 11.1 60 818-877 142-202 (236)
390 COG4649 Uncharacterized protei 63.1 2.4E+02 0.0053 31.9 15.0 132 722-872 62-195 (221)
391 COG5290 IkappaB kinase complex 62.4 5.6E+02 0.012 35.0 20.0 26 847-872 938-963 (1243)
392 KOG1924 RhoA GTPase effector D 62.2 15 0.00032 48.4 6.6 27 1509-1538 628-654 (1102)
393 cd09239 BRO1_HD-PTP_like Prote 61.7 4.1E+02 0.009 33.3 19.1 34 884-917 250-283 (361)
394 PF14561 TPR_20: Tetratricopep 61.4 54 0.0012 32.7 9.1 72 756-854 18-89 (90)
395 PF07721 TPR_4: Tetratricopept 61.2 8.6 0.00019 29.2 2.7 24 761-784 2-25 (26)
396 PRK10941 hypothetical protein; 60.8 63 0.0014 38.7 11.2 81 758-851 179-259 (269)
397 PRK13184 pknD serine/threonine 60.3 75 0.0016 44.3 13.1 88 823-917 533-622 (932)
398 KOG0307 Vesicle coat complex C 59.9 50 0.0011 45.6 11.0 13 1401-1413 710-722 (1049)
399 KOG0905 Phosphoinositide 3-kin 59.5 37 0.0008 47.0 9.6 26 1661-1687 309-336 (1639)
400 cd09034 BRO1_Alix_like Protein 59.5 2.4E+02 0.0052 34.7 16.4 35 884-918 249-283 (345)
401 cd09246 BRO1_Alix_like_1 Prote 59.1 4.5E+02 0.0097 32.8 19.0 33 884-916 245-277 (353)
402 KOG0994 Extracellular matrix g 59.1 3.3E+02 0.0072 38.4 17.7 20 811-830 1534-1553(1758)
403 PF14853 Fis1_TPR_C: Fis1 C-te 59.0 51 0.0011 29.9 7.6 29 846-874 3-31 (53)
404 PF09613 HrpB1_HrpK: Bacterial 58.0 61 0.0013 36.0 9.5 89 799-903 7-95 (160)
405 KOG3364 Membrane protein invol 57.5 78 0.0017 34.3 9.8 80 843-933 31-113 (149)
406 KOG0890 Protein kinase of the 57.4 4E+02 0.0087 40.5 19.4 110 798-917 1666-1786(2382)
407 PF04625 DEC-1_N: DEC-1 protei 57.2 32 0.00069 41.2 7.6 53 1478-1534 133-195 (407)
408 KOG3824 Huntingtin interacting 57.0 23 0.00049 42.5 6.4 65 717-789 115-179 (472)
409 cd09240 BRO1_Alix Protein-inte 57.0 2.5E+02 0.0053 35.0 15.8 40 712-751 113-161 (346)
410 PF10255 Paf67: RNA polymerase 56.7 15 0.00033 46.1 5.4 74 804-877 124-197 (404)
411 PF10373 EST1_DNA_bind: Est1 D 56.4 83 0.0018 36.8 11.3 62 737-814 1-62 (278)
412 KOG3364 Membrane protein invol 54.7 1.1E+02 0.0024 33.2 10.3 69 759-831 31-100 (149)
413 KOG4521 Nuclear pore complex, 54.2 4.5E+02 0.0099 37.3 18.0 133 711-861 913-1071(1480)
414 PF14561 TPR_20: Tetratricopep 53.8 1E+02 0.0022 30.8 9.6 35 840-874 18-52 (90)
415 cd09241 BRO1_ScRim20-like Prot 53.4 2.4E+02 0.0052 35.2 15.0 39 713-751 101-148 (355)
416 KOG2114 Vacuolar assembly/sort 53.3 1.1E+02 0.0024 41.5 12.2 48 783-831 350-397 (933)
417 COG3629 DnrI DNA-binding trans 53.2 1.4E+02 0.003 36.1 12.3 91 776-884 137-227 (280)
418 KOG3807 Predicted membrane pro 52.8 3E+02 0.0066 33.8 14.6 119 768-902 192-327 (556)
419 PF07721 TPR_4: Tetratricopept 52.4 18 0.00039 27.5 3.2 25 803-827 2-26 (26)
420 KOG2034 Vacuolar sorting prote 51.8 4.8E+02 0.01 36.1 17.6 59 765-834 363-421 (911)
421 KOG2460 Signal recognition par 51.8 3.1E+02 0.0067 35.7 15.1 33 888-920 424-456 (593)
422 KOG4563 Cell cycle-regulated h 51.2 33 0.00071 42.2 6.7 65 802-866 41-105 (400)
423 COG3014 Uncharacterized protei 49.6 3E+02 0.0065 34.1 13.9 30 887-916 214-243 (449)
424 KOG3024 Uncharacterized conser 49.2 2.9E+02 0.0063 33.5 13.6 134 727-869 15-152 (312)
425 cd09243 BRO1_Brox_like Protein 48.7 2.8E+02 0.0061 34.7 14.4 37 713-749 104-152 (353)
426 KOG1258 mRNA processing protei 48.6 8E+02 0.017 32.6 22.3 172 719-916 298-471 (577)
427 COG3914 Spy Predicted O-linked 48.2 3.4E+02 0.0074 35.9 15.0 109 752-874 60-172 (620)
428 TIGR02710 CRISPR-associated pr 47.4 2.6E+02 0.0057 35.3 13.8 109 765-876 135-278 (380)
429 PF04097 Nic96: Nup93/Nic96; 47.1 7.3E+02 0.016 33.4 18.9 18 726-743 266-283 (613)
430 KOG2908 26S proteasome regulat 46.6 3.3E+02 0.0072 33.8 13.8 97 729-831 86-183 (380)
431 PF04053 Coatomer_WDAD: Coatom 46.3 2.6E+02 0.0057 36.0 14.0 82 760-870 347-428 (443)
432 PF07271 Cytadhesin_P30: Cytad 46.2 87 0.0019 37.1 8.8 22 1425-1448 203-224 (279)
433 cd09247 BRO1_Alix_like_2 Prote 46.1 6.8E+02 0.015 31.1 19.4 37 884-920 251-287 (346)
434 KOG2460 Signal recognition par 43.9 8.9E+02 0.019 31.8 27.1 33 970-1002 424-456 (593)
435 cd09244 BRO1_Rhophilin Protein 43.6 3E+02 0.0065 34.4 13.5 32 760-791 106-146 (350)
436 KOG3824 Huntingtin interacting 43.1 48 0.001 39.9 6.1 59 765-831 121-179 (472)
437 cd09242 BRO1_ScBro1_like Prote 42.9 5E+02 0.011 32.4 15.4 34 885-918 243-276 (348)
438 KOG3024 Uncharacterized conser 42.6 3.1E+02 0.0068 33.2 12.6 61 849-910 90-151 (312)
439 COG3014 Uncharacterized protei 42.4 7.8E+02 0.017 30.7 17.3 28 806-833 62-89 (449)
440 KOG1258 mRNA processing protei 42.4 9.8E+02 0.021 31.9 20.9 129 756-907 293-421 (577)
441 cd09243 BRO1_Brox_like Protein 41.6 6.6E+02 0.014 31.5 16.1 34 884-917 246-279 (353)
442 COG4976 Predicted methyltransf 40.9 29 0.00063 40.4 3.9 57 851-915 2-58 (287)
443 cd02682 MIT_AAA_Arch MIT: doma 40.5 2E+02 0.0044 28.1 8.9 34 802-835 6-39 (75)
444 KOG4849 mRNA cleavage factor I 40.4 1.2E+02 0.0026 37.0 8.8 33 1454-1486 290-322 (498)
445 cd09241 BRO1_ScRim20-like Prot 40.4 8.3E+02 0.018 30.5 18.1 35 884-918 235-269 (355)
446 COG3947 Response regulator con 39.7 1.8E+02 0.0038 35.4 10.0 71 804-882 281-351 (361)
447 PF10858 DUF2659: Protein of u 39.6 3.3E+02 0.0071 30.6 11.2 103 722-830 97-199 (220)
448 PF04190 DUF410: Protein of un 39.6 7.3E+02 0.016 29.6 24.1 157 730-915 2-170 (260)
449 KOG0276 Vesicle coat complex C 38.9 2.4E+02 0.0053 37.2 11.7 87 813-912 648-747 (794)
450 TIGR02561 HrpB1_HrpK type III 38.9 1.4E+02 0.003 32.9 8.4 87 801-903 9-95 (153)
451 PHA02537 M terminase endonucle 38.6 87 0.0019 36.8 7.4 49 967-1020 168-225 (230)
452 KOG1984 Vesicle coat complex C 37.8 2.5E+02 0.0053 38.5 11.8 36 1446-1481 164-201 (1007)
453 cd09247 BRO1_Alix_like_2 Prote 37.5 6.6E+02 0.014 31.2 15.3 33 844-876 253-285 (346)
454 cd02681 MIT_calpain7_1 MIT: do 37.3 1.8E+02 0.0038 28.5 8.0 34 717-750 5-38 (76)
455 PF14858 DUF4486: Domain of un 37.2 9.8E+02 0.021 31.7 16.7 72 847-918 154-229 (542)
456 KOG2199 Signal transducing ada 36.7 85 0.0019 39.0 7.1 8 1527-1534 450-457 (462)
457 KOG0889 Histone acetyltransfer 36.4 2.3E+03 0.051 34.6 23.0 37 966-1002 2810-2846(3550)
458 TIGR03504 FimV_Cterm FimV C-te 36.3 69 0.0015 28.0 4.6 25 722-746 3-27 (44)
459 PF08311 Mad3_BUB1_I: Mad3/BUB 36.0 2.8E+02 0.0061 29.4 10.2 86 816-913 40-126 (126)
460 KOG0132 RNA polymerase II C-te 35.6 2.8E+02 0.0061 37.5 11.7 42 584-627 62-103 (894)
461 KOG0546 HSP90 co-chaperone CPR 35.6 68 0.0015 39.6 6.1 117 806-935 226-353 (372)
462 PF10858 DUF2659: Protein of u 35.5 6.9E+02 0.015 28.2 14.0 102 766-873 99-200 (220)
463 cd09034 BRO1_Alix_like Protein 35.2 4.1E+02 0.0089 32.7 13.1 19 733-751 136-154 (345)
464 cd09245 BRO1_UmRIM23-like Prot 34.4 9.8E+02 0.021 30.7 16.3 33 885-917 295-327 (413)
465 cd02682 MIT_AAA_Arch MIT: doma 34.2 91 0.002 30.4 5.5 37 716-752 4-40 (75)
466 cd02683 MIT_1 MIT: domain cont 33.7 2E+02 0.0043 28.1 7.9 37 716-752 4-40 (77)
467 KOG0132 RNA polymerase II C-te 32.0 95 0.0021 41.6 6.8 7 1453-1459 626-632 (894)
468 PF03097 BRO1: BRO1-like domai 31.9 3.2E+02 0.0069 34.0 11.5 35 885-919 238-272 (377)
469 COG4976 Predicted methyltransf 31.8 68 0.0015 37.5 5.0 56 726-789 3-58 (287)
470 KOG2070 Guanine nucleotide exc 31.6 1.1E+02 0.0023 39.0 6.9 77 1461-1561 420-496 (661)
471 KOG1953 Targeting complex (TRA 31.4 4.1E+02 0.009 37.0 12.4 48 716-765 243-290 (1235)
472 PF04212 MIT: MIT (microtubule 31.2 1.8E+02 0.004 27.2 7.1 37 716-752 3-39 (69)
473 smart00745 MIT Microtubule Int 30.9 3.8E+02 0.0082 25.5 9.3 31 806-836 12-42 (77)
474 TIGR03504 FimV_Cterm FimV C-te 30.0 74 0.0016 27.8 3.8 25 848-872 3-27 (44)
475 cd02681 MIT_calpain7_1 MIT: do 29.9 4.5E+02 0.0097 25.7 9.5 32 888-919 8-39 (76)
476 KOG1310 WD40 repeat protein [G 29.9 1.7E+02 0.0037 37.9 8.3 78 776-869 390-470 (758)
477 cd02678 MIT_VPS4 MIT: domain c 29.9 2.7E+02 0.0058 26.7 8.1 36 717-752 5-40 (75)
478 PRK14707 hypothetical protein; 29.7 4E+02 0.0086 40.2 12.4 152 764-917 1045-1198(2710)
479 KOG3161 Predicted E3 ubiquitin 29.2 1.7E+02 0.0036 38.6 8.1 14 1401-1414 469-482 (861)
480 PF04212 MIT: MIT (microtubule 28.9 3.2E+02 0.007 25.5 8.3 34 888-921 7-40 (69)
481 PF07163 Pex26: Pex26 protein; 28.9 7.6E+02 0.016 30.1 12.8 141 718-868 34-182 (309)
482 KOG2063 Vacuolar assembly/sort 28.8 1.4E+03 0.03 32.2 17.0 238 705-944 491-799 (877)
483 KOG4672 Uncharacterized conser 28.6 2.2E+02 0.0048 35.7 8.7 125 1346-1478 265-397 (487)
484 PF15336 Auts2: Autism suscept 28.4 3.7E+02 0.0081 31.1 9.8 18 1526-1543 145-164 (212)
485 cd02679 MIT_spastin MIT: domai 28.4 1.7E+02 0.0036 28.9 6.4 35 802-836 8-42 (79)
486 cd02679 MIT_spastin MIT: domai 28.1 2E+02 0.0043 28.4 6.8 37 762-798 10-46 (79)
487 KOG1830 Wiskott Aldrich syndro 27.6 1.4E+03 0.03 29.3 15.2 14 1488-1501 348-361 (518)
488 KOG0546 HSP90 co-chaperone CPR 27.4 63 0.0014 39.9 4.0 102 765-874 227-339 (372)
489 COG2178 Predicted RNA-binding 26.3 6.3E+02 0.014 29.2 11.1 30 890-919 33-62 (204)
490 cd02684 MIT_2 MIT: domain cont 26.0 3.6E+02 0.0078 26.2 8.1 37 716-752 4-40 (75)
491 PF03097 BRO1: BRO1-like domai 25.9 1E+03 0.022 29.7 14.4 41 711-751 100-149 (377)
492 KOG3663 Nuclear factor I [Tran 25.5 3.6E+02 0.0077 33.9 9.6 17 1494-1510 395-411 (518)
493 KOG2236 Uncharacterized conser 25.5 1.7E+02 0.0036 37.3 7.1 7 1438-1444 410-416 (483)
494 KOG1029 Endocytic adaptor prot 25.5 98 0.0021 41.3 5.3 38 1430-1470 118-155 (1118)
495 KOG2034 Vacuolar sorting prote 25.5 9.5E+02 0.021 33.4 14.2 57 725-792 365-421 (911)
496 PF09311 Rab5-bind: Rabaptin-l 24.9 1.5E+02 0.0033 33.4 6.3 49 795-843 133-181 (181)
497 cd02683 MIT_1 MIT: domain cont 24.7 5.6E+02 0.012 25.0 9.2 42 889-930 9-51 (77)
498 PRK09169 hypothetical protein; 24.5 1.3E+03 0.028 35.7 16.2 113 807-919 668-780 (2316)
499 KOG4217 Nuclear receptors of t 24.4 2.9E+02 0.0063 35.3 8.8 18 1493-1510 179-196 (605)
500 cd02656 MIT MIT: domain contai 24.1 4.1E+02 0.009 25.2 8.2 36 717-752 5-40 (75)
No 1
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=100.00 E-value=3.4e-106 Score=1025.21 Aligned_cols=868 Identities=24% Similarity=0.324 Sum_probs=718.0
Q ss_pred CCCCccccccccccccCCCChhhhhcccccccccCCCCCceEEEEEEEeCCCEEEEEEeccceeecCC-----------C
Q 000292 4 AFPKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRKGFYSVGK-----------Q 72 (1713)
Q Consensus 4 ~~~~l~~~~~~~s~s~~~pP~~~~r~~~~~~~~~~~~~gdl~yL~v~t~eg~~~~Ita~~~GFyvn~~-----------~ 72 (1713)
+.|+-..||+.++||.|||||.++|+ +||||||+|+|+||++||||||++|||||++ .
T Consensus 187 ~~~~~~~~~~~La~sp~nppp~~~~~-----------~g~l~yL~v~t~e~~~~~it~~~~gfyvNns~~~~fdP~p~~~ 255 (1236)
T KOG1839|consen 187 SGPKWAKCFRVLAFSPCNPPPERRVL-----------DGDLFYLHVVTLEGSVFHITAIIKGFYVNNSQSSKFDPSPSGS 255 (1236)
T ss_pred CCcccchHHHHHhcCCCCCCCcceee-----------cccEEEEEEEEeeccEEEEEEeeeeEEEeccccCCCCCCCCCC
Confidence 44688899999999999999999999 9999999999999999999999999999964 3
Q ss_pred CcccchHHHHHhhhcHHHHHHHHHHHHHhhccCCCccCCCcccCCccccCCCCCCCCCCCCCCCcccccc--CCCCCCCC
Q 000292 73 RILCHNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRANTWLIPPIAAQSPSVFPPLPAEDEAW--GGNGGGLG 150 (1713)
Q Consensus 73 ~~~~HsL~~LL~~iSp~F~~~f~~l~k~~~~~~~f~~~p~~~~~~~Wlvp~~~~~~~~~~~~l~~Ed~~~--~g~~~gq~ 150 (1713)
+.++|||++||+++||.|+++|...+|+++++|+|||++++|+..+|+|+++.| ..+.+|+|+.+. ..+.+|++
T Consensus 256 ~~ls~sl~~ll~~~S~kfkk~~~~~~~~~s~~~~~er~~~~~~~~sw~~~~~~~----~~d~~r~~~A~~~~~~~~~G~~ 331 (1236)
T KOG1839|consen 256 GDLSHSLIRLLASLSPKFKKAFQTILKKLSSEELAERVLLKTPDESWIVHPLPH----LADAARAEEALTGYYLEHIGYT 331 (1236)
T ss_pred ccchhhHHHHHHhhChHHHHHHHHHHHHHhhhhHHHhccccCCCccccccCCCc----hHHHHhhHHHhccceeccCccc
Confidence 479999999999999999999999999999999999999999999999998876 456789999875 23458888
Q ss_pred CCCCCCCcchHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc-cccCCCC-----CCccccCCceee
Q 000292 151 RDGKSDLIPWANEFLFVASMPCKTAEERQIRDRKAFLLHNLFVDVAIFRAIKAVH-HVMGKPE-----LIYPSNCKILYT 224 (1713)
Q Consensus 151 rD~~~~~rdWNeEfQ~lreLP~~t~~ER~~RdR~~fkl~sdFV~aA~~gA~~VI~-~~m~~~~-----~~~fi~nnIffs 224 (1713)
|| ||||||++||||+++++||++|+|.+||++.||+++|++|||+||+ ++++.+. .+||+||||||+
T Consensus 332 rd-------wNee~Qt~re~~~~~l~dr~~rer~~~Kv~~df~~~a~~Ga~~vi~~ni~ainp~e~~~~qm~i~~nIf~s 404 (1236)
T KOG1839|consen 332 RD-------WNEELQTTREMPHKDLPDRGARERNLNKVRGDFVKAATRGALAVISGNIVAINPEEPTILQMFIWNNIFFS 404 (1236)
T ss_pred cc-------hhhhhhhhhhcCccccchhhhhhhccccchhhhcccccccccccccCccccCCCchHHHHHHHHHhhhhee
Confidence 98 9999999999999999999999999999999999999999999999 6776543 479999999999
Q ss_pred eeccceeEEEecccccccccccccccCcccCCcchhhHhhhhhccccccccccccCCcccccEEEEEecCeEEEEE--E-
Q 000292 225 EIIGGLRIAIMKDASNACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYIAVVK--V- 301 (1713)
Q Consensus 225 ~~vg~~~~~V~rD~~d~~~k~d~~~~G~~~~G~~~a~~A~~n~LkGl~ay~~~~v~gl~tlgtvvVDYrGyRvvAq--v- 301 (1713)
++ ||| +++ |+. .+|+-+|+.|+.+||+|++.|..++++||+||||++||||||||+|| +
T Consensus 405 ~~-----~dv-~~~----y~~--------~g~dvaa~~a~s~dl~g~r~~n~~d~~~l~~Lgt~~vDy~g~rv~Aq~i~~ 466 (1236)
T KOG1839|consen 405 EG-----FDV-RGH----YKL--------GGGDVAAYAAPSTDLNGKRLYNTVDVPGLKTLGTTVVDYRGYRVVAQVIIN 466 (1236)
T ss_pred ee-----ccc-ccc----ccc--------cchhHHhhhhccccccccccccccchhhhcchhheeeeccCceEEEEeecC
Confidence 85 455 444 442 67778899999999999999999999999999999999999999999 6
Q ss_pred ecccccccCC--CccccccccCcCccccc-----------cccccccccccccCCCCCCCCCCCCCcchhhcc--cchhH
Q 000292 302 QERENKKVGP--LFQSIELEQPEGGANAL-----------NINSLRLLIHETTTLEDNKPAPNLQNLEREELN--ASQMF 366 (1713)
Q Consensus 302 pGi~~~~~~~--~~~~i~~~~~egg~~~l-----------~~~~L~ll~H~v~~~~~~~~~~~~~~~d~~~l~--~sR~Y 366 (1713)
|||+++.+.+ +++++++ |+..+ ..+.|.+++|.+.+........++.++++++|. |||+|
T Consensus 467 p~~l~~d~~~~~~~g~~~~-----~K~~~~~e~~~~l~~~~s~~l~i~~h~~i~~~d~~~~eL~~s~eskgi~g~DgR~y 541 (1236)
T KOG1839|consen 467 PGILEGDQSQSVIYGPVDE-----GKELLSEEAYQRLLERASKLLLISPHPVINAKDTVLPELGISFESKGISGVDGRHY 541 (1236)
T ss_pred Ccchhcccccceeeccccc-----cccccccHHHHHhhcccccccccCCccccchhhccccccccccccccccCCCcchh
Confidence 9998766554 3333333 33322 237889999988777655677788899999996 89999
Q ss_pred hHHHHHhhhhhh-----------hccCCcccccccHhHHHHHHHHHHHHHHHHHhHhhhHHHHhhhhhhhhhhhhhhccC
Q 000292 367 VERLLEESIAKL-----------EEEKPEREHFVRWELGACWIQHLQDQKNAEKDKKLSKEKAKKLSNEKAKSEMKVEGL 435 (1713)
Q Consensus 367 vlDl~R~~~~~l-----------~~e~~~~~~~LRpELv~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 435 (1713)
++||+|++|+++ .+.++|+.++|||||+..|++|+..-.....++... +.+.++.... .+....++
T Consensus 542 llDL~~t~Pld~~~L~~~~~~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i~~~e~~~~--~~~~ds~~~~-~~~d~~~~ 618 (1236)
T KOG1839|consen 542 LLDLMHTRPLDLNFLGVEAVEELAEKYPHKLSLLRPELILKFYEHRLLAFIVAVENAAE--DYGFDSSNPF-KKSDAIGL 618 (1236)
T ss_pred HHHHHhccCCcccccchhhhhhccccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcchh--hccCCccccc-cccchhhH
Confidence 999999988753 246889999999999999998875544332221111 0000000000 00000000
Q ss_pred CCcchhhcccccccCCCCccccccccccccCCccccccCccchhhhhhhhhhhhhH---------HHHHhhcCChHHHhh
Q 000292 436 GTPLKSLKNNRKKSEGSNHKIHSETLKSQADGVNGESEKATSASIEARLESRDKEN---------ELALKNLLSDEAFAR 506 (1713)
Q Consensus 436 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~e~---------~~~~~~~L~~dAF~~ 506 (1713)
. ..+..+..+..++- +.-+. ... ++-+. .....--.+++.|..
T Consensus 619 ~------------------~v~~l~~~is~d~~--eS~~~-------~~~-dav~~~~~al~k~~~~~~~~~fnp~~f~s 670 (1236)
T KOG1839|consen 619 V------------------PVHKLVNCISADGR--ESSKL-------SLD-DAVKYATKALVKLVAVCGPYGFNPAGFYS 670 (1236)
T ss_pred H------------------HHHHHHHhhccccc--ccccc-------chH-HHHHHHHHHHHHHHhhhcccccCcccccc
Confidence 0 00000000000000 00000 000 00000 001112344444443
Q ss_pred h----ccccccccccchHHHHHHHHHHHHHchHHHHHHHhccCCCCCCCcchHHHHHHhcccccchhHHHHHHhh-----
Q 000292 507 L----KESETGLHCKSLEELIDLSHNYYVEVALPKLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSE----- 577 (1713)
Q Consensus 507 ~----~~~~~~~~~~~~eelv~~a~~fL~~~~IP~lV~d~~~~~~~P~DG~sLte~lH~rGINmRYLG~Va~l~~----- 577 (1713)
+ -..+.......+++.+.++.+||....||.+++++.++.+.|+||++|+++||..|||+||||+++.++.
T Consensus 671 ~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a 750 (1236)
T KOG1839|consen 671 LAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAA 750 (1236)
T ss_pred CceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccc
Confidence 1 1111112334557889999999999999999999999999999999999999999999999999998763
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhhccccCCCCC----------C-----------
Q 000292 578 --KLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGLN----------K----------- 634 (1713)
Q Consensus 578 --~L~~i~~l~~~EMIaRA~KhILRa~lr~l~~~~~la~AIahfLNcLLG~~~~~~~~----------~----------- 634 (1713)
.+.++.+|++-|++.|++||+||.++|. .....+..+++|||||+|+..+..... +
T Consensus 751 ~~~~v~l~~l~~~ei~~RslKhvlK~~~r~-l~~~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~ 829 (1236)
T KOG1839|consen 751 TYINVALMELGVGEIALRSLKHVLKDNLRL-LGADHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGT 829 (1236)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCC
Confidence 2667889999999999999999999998 588899999999999999984432100 0
Q ss_pred -CC---------CCchhHHHHHHHHHHHHhcccccCCChh------hhhHHHHHHHHHHHhhhhhhcccccCCCC---CC
Q 000292 635 -SH---------NVHPLVWRWLELFLMKRYEWDLNGLNFK------DVRKFAILRGLCHKVGIELVSRDFDMDSP---SP 695 (1713)
Q Consensus 635 -~~---------~~~~~lw~~I~~elk~ry~y~L~~~~~~------~l~k~aLLReLc~KlGIqL~~R~Y~fdsa---~~ 695 (1713)
.. -....+|++|+.....+|++........ ...++++.+..|.+.|++...|.|+|+.. ..
T Consensus 830 ~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~ 909 (1236)
T KOG1839|consen 830 PKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSE 909 (1236)
T ss_pred CCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCCC
Confidence 00 1123599999999998998877654433 35588899999999999999999999984 78
Q ss_pred chHHHHhhhccchhhccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC
Q 000292 696 FRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD 775 (1713)
Q Consensus 696 F~~eDIlnl~PvvK~~~~~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd 775 (1713)
|...||+++.|++|+..+...++...++.|+..+.+|.+.+|.+ .-+++.++.+++|..|++++.+|..|+.++..+|+
T Consensus 910 f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d 988 (1236)
T KOG1839|consen 910 FNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGD 988 (1236)
T ss_pred CCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000292 776 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 855 (1713)
Q Consensus 776 ~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~ 855 (1713)
+++|+.+.++|+.+.+|.+|.|++.++..|.+|+.+++..++...|+..+.+|++++...+|++||..+.+..|++.++.
T Consensus 989 ~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~ 1068 (1236)
T KOG1839|consen 989 NQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL 1068 (1236)
T ss_pred hHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000292 856 GLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 935 (1713)
Q Consensus 856 ~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La 935 (1713)
..++++.|+++++.|+++..+++|+.+..++.+++.+|+++..++++..|+.+.+.++.|++.++|++|.++.++..|+.
T Consensus 1069 ~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~~ 1148 (1236)
T KOG1839|consen 1069 GVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWLN 1148 (1236)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000292 936 YFESKAFEQQEAAR 949 (1713)
Q Consensus 936 ~L~qka~e~AeAl~ 949 (1713)
..+..++..++.+.
T Consensus 1149 ~~T~~~v~~Qk~~~ 1162 (1236)
T KOG1839|consen 1149 LSTAIAVKIQKKLL 1162 (1236)
T ss_pred HhhHHHHHHHHHHH
Confidence 88887777766554
No 2
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=100.00 E-value=6.8e-44 Score=456.22 Aligned_cols=934 Identities=36% Similarity=0.487 Sum_probs=639.9
Q ss_pred CCCCCccccccccccccCCCChhhhhcccccccccCCCCCceEEEEEEEeCCCEEEEEEeccceeecCCCCcccchHHHH
Q 000292 3 HAFPKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRKGFYSVGKQRILCHNIVDL 82 (1713)
Q Consensus 3 ~~~~~l~~~~~~~s~s~~~pP~~~~r~~~~~~~~~~~~~gdl~yL~v~t~eg~~~~Ita~~~GFyvn~~~~~~~HsL~~L 82 (1713)
++.+++.++|.||..-+++||.-|..+.... ...|.+-+-+..+.|+..++-+.+.|||-..+..++||+++||
T Consensus 50 ~~~~~v~~~~q~l~~~~~t~~~tc~~L~~~~------~~~d~~~~~~~i~~~~~~~~l~~v~~pY~~re~~~Hv~~vrdl 123 (1236)
T KOG1839|consen 50 SSFSKVQDVRQVLLDRPLTCYITCLSLLLDE------SKLDYFHIKKKISSGKPGCVLASVLGPYTPREARLHVHSVRDL 123 (1236)
T ss_pred cCcchhhhHHHHHhcccccCceeEEEEEecc------cccccccceeeecCCCcceEEEEecccCChHHHHHHHHHHHHH
Confidence 4677888899999999999998888875544 4788899999999999999999999999988888999999999
Q ss_pred HhhhcHHHHHHHHHHHHHhhccCCCccCCCcccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCcchHH
Q 000292 83 LGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRANTWLIPPIAAQSPSVFPPLPAEDEAWGGNGGGLGRDGKSDLIPWAN 162 (1713)
Q Consensus 83 L~~iSp~F~~~f~~l~k~~~~~~~f~~~p~~~~~~~Wlvp~~~~~~~~~~~~l~~Ed~~~~g~~~gq~rD~~~~~rdWNe 162 (1713)
| .+..|..+|..+++++..++|+.++|.+++.++|++|... ...++++|.||+.|+++++ ++|-|+ .|+.
T Consensus 124 L--~~~~~~sa~~~~~~a~~~~~~~~~i~~~~~~~t~~~p~d~---~~~~~~lp~~~e~~~~~~~-~~~~~~----~~~~ 193 (1236)
T KOG1839|consen 124 L--SSSDFASAYSPLMKAFFDHNKLGNIPLGDRKNTWVDPEDC---KPPFPDLPGEDERWGGDGG-EGRSGP----KWAK 193 (1236)
T ss_pred H--hcCChhhhhcchhhhhhhhccccCCCccccccCCCCcccc---CCCCCCCCccccccCCCCC-cCCCCc----ccch
Confidence 9 8999999999999999999999999999999999999533 4578899999999999987 888777 6999
Q ss_pred HHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccccCCC-CCCccc---cCCceeeeeccceeEEEeccc
Q 000292 163 EFLFVASMPCKTAEERQIRDRKAFLLHNLFVDVAIFRAIKAVHHVMGKP-ELIYPS---NCKILYTEIIGGLRIAIMKDA 238 (1713)
Q Consensus 163 EfQ~lreLP~~t~~ER~~RdR~~fkl~sdFV~aA~~gA~~VI~~~m~~~-~~~~fi---~nnIffs~~vg~~~~~V~rD~ 238 (1713)
+|-.|.-+||++.++|..|++.+|.||..|++.-++.++++|++++.++ ....|- .++ |++...|-++-
T Consensus 194 ~~~~La~sp~nppp~~~~~~g~l~yL~v~t~e~~~~~it~~~~gfyvNns~~~~fdP~p~~~-------~~ls~sl~~ll 266 (1236)
T KOG1839|consen 194 CFRVLAFSPCNPPPERRVLDGDLFYLHVVTLEGSVFHITAIIKGFYVNNSQSSKFDPSPSGS-------GDLSHSLIRLL 266 (1236)
T ss_pred HHHHHhcCCCCCCCcceeecccEEEEEEEEeeccEEEEEEeeeeEEEeccccCCCCCCCCCC-------ccchhhHHHHH
Confidence 9999999999999999999999999999999999999999999988764 222221 222 11111111232
Q ss_pred ccccccccccccCcccCCcchhhHhhhhhccccccccccccCCcc----------cccEEEEEecCeEEEEEEecccccc
Q 000292 239 SNACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVA----------TLGVVNVRYCGYIAVVKVQERENKK 308 (1713)
Q Consensus 239 ~d~~~k~d~~~~G~~~~G~~~a~~A~~n~LkGl~ay~~~~v~gl~----------tlgtvvVDYrGyRvvAqvpGi~~~~ 308 (1713)
.+.+.+. -+-.+...---...+.++|+.++ ...++..++=+- -++-..++.+||.-.-- +
T Consensus 267 ~~~S~kf-kk~~~~~~~~~s~~~~~er~~~~--~~~~sw~~~~~~~~~d~~r~~~A~~~~~~~~~G~~rdwN-------e 336 (1236)
T KOG1839|consen 267 ASLSPKF-KKAFQTILKKLSSEELAERVLLK--TPDESWIVHPLPHLADAARAEEALTGYYLEHIGYTRDWN-------E 336 (1236)
T ss_pred HhhChHH-HHHHHHHHHHHhhhhHHHhcccc--CCCccccccCCCchHHHHhhHHHhccceeccCccccchh-------h
Confidence 2222221 00000000011134566777777 554455444331 22245666667654311 1
Q ss_pred cCCCcccccc-ccCcCccccccccccccccccccCCCCCCCCCCCCCcchhhcccchhHhHH-HHHhhhhhhhccCCccc
Q 000292 309 VGPLFQSIEL-EQPEGGANALNINSLRLLIHETTTLEDNKPAPNLQNLEREELNASQMFVER-LLEESIAKLEEEKPERE 386 (1713)
Q Consensus 309 ~~~~~~~i~~-~~~egg~~~l~~~~L~ll~H~v~~~~~~~~~~~~~~~d~~~l~~sR~YvlD-l~R~~~~~l~~e~~~~~ 386 (1713)
-.+..+...- +.+|++.+..+..+++--.|+.-.... ...+.+.+ -.+...--+++. |+-.++-.+.+......
T Consensus 337 e~Qt~re~~~~~l~dr~~rer~~~Kv~~df~~~a~~Ga--~~vi~~ni--~ainp~e~~~~qm~i~~nIf~s~~~dv~~~ 412 (1236)
T KOG1839|consen 337 ELQTTREMPHKDLPDRGARERNLNKVRGDFVKAATRGA--LAVISGNI--VAINPEEPTILQMFIWNNIFFSEGFDVRGH 412 (1236)
T ss_pred hhhhhhhcCccccchhhhhhhccccchhhhcccccccc--cccccCcc--ccCCCchHHHHHHHHHhhhheeeecccccc
Confidence 1223333333 678999998888888877775522221 11122211 112222222211 22222222322222111
Q ss_pred ccccHhHHHHHHHHHHHHHHHHHhHhhhHHHHhhhhhhhhhhhhhhccCCCcchhhcccccccCCCC--ccccccccccc
Q 000292 387 HFVRWELGACWIQHLQDQKNAEKDKKLSKEKAKKLSNEKAKSEMKVEGLGTPLKSLKNNRKKSEGSN--HKIHSETLKSQ 464 (1713)
Q Consensus 387 ~~LRpELv~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~k~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 464 (1713)
+ |++.+|+++++.- ..+.. . ........++.+.+||+...+.++......+.. +....++.+..
T Consensus 413 y----~~~g~dvaa~~a~-s~dl~-------g--~r~~n~~d~~~l~~Lgt~~vDy~g~rv~Aq~i~~p~~l~~d~~~~~ 478 (1236)
T KOG1839|consen 413 Y----KLGGGDVAAYAAP-STDLN-------G--KRLYNTVDVPGLKTLGTTVVDYRGYRVVAQVIINPGILEGDQSQSV 478 (1236)
T ss_pred c----cccchhHHhhhhc-ccccc-------c--cccccccchhhhcchhheeeeccCceEEEEeecCCcchhcccccce
Confidence 1 8899999998622 11100 0 000112235667788888777776665433211 00001111100
Q ss_pred cCCccccccCccchhhhhhhhhhhhhHHHHHhhcCChHHHhhhccccccccccchHHHHHHHHHHHHHchHHHHHHHhcc
Q 000292 465 ADGVNGESEKATSASIEARLESRDKENELALKNLLSDEAFARLKESETGLHCKSLEELIDLSHNYYVEVALPKLVTDFGS 544 (1713)
Q Consensus 465 ~~~~~~~~~n~~~~~~~~~~~~~~~e~~~~~~~~L~~dAF~~~~~~~~~~~~~~~eelv~~a~~fL~~~~IP~lV~d~~~ 544 (1713)
+. ......+..++.++|.++.+..+..+.......+.++.. +.+++...+.+
T Consensus 479 ~~-----------------------g~~~~~K~~~~~e~~~~l~~~~s~~l~i~~h~~i~~~d~-----~~~eL~~s~es 530 (1236)
T KOG1839|consen 479 IY-----------------------GPVDEGKELLSEEAYQRLLERASKLLLISPHPVINAKDT-----VLPELGISFES 530 (1236)
T ss_pred ee-----------------------ccccccccccccHHHHHhhcccccccccCCccccchhhc-----ccccccccccc
Confidence 00 001124667888999999888887777766777776633 78888888889
Q ss_pred CCCCCCCcc-hHHHHHHhcccccchhH--HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 000292 545 LELSPVDGR-TLTDFMHTRGLQMRSLG--HVVKLSEKLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALN 621 (1713)
Q Consensus 545 ~~~~P~DG~-sLte~lH~rGINmRYLG--~Va~l~~~L~~i~~l~~~EMIaRA~KhILRa~lr~l~~~~~la~AIahfLN 621 (1713)
..+.|.||+ .|.|+||.++..|+||| ++..+..+++|.+.+|..|||.+.++|.+.+.++.+ -|
T Consensus 531 kgi~g~DgR~yllDL~~t~Pld~~~L~~~~~~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i~~~-------------e~ 597 (1236)
T KOG1839|consen 531 KGISGVDGRHYLLDLMHTRPLDLNFLGVEAVEELAEKYPHKLSLLRPELILKFYEHRLLAFIVAV-------------EN 597 (1236)
T ss_pred ccccCCCcchhHHHHHhccCCcccccchhhhhhccccCchhhhhcCHHHHHHHHHHHHHHHHHHH-------------hc
Confidence 999999998 89999999999999999 999998899999999999999999999999888663 11
Q ss_pred HhhccccCCCCCCCCCCchhHHHHHHHHHHHHhcccccCCChhhhhHHHHHHHHHHHhhhhhhcccccCCCCCCchHHHH
Q 000292 622 LMLGVHESDGLNKSHNVHPLVWRWLELFLMKRYEWDLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDV 701 (1713)
Q Consensus 622 cLLG~~~~~~~~~~~~~~~~lw~~I~~elk~ry~y~L~~~~~~~l~k~aLLReLc~KlGIqL~~R~Y~fdsa~~F~~eDI 701 (1713)
+.- +|.++....|...|+
T Consensus 598 ~~~--------------------------------------------------------------~~~~ds~~~~~~~d~ 615 (1236)
T KOG1839|consen 598 AAE--------------------------------------------------------------DYGFDSSNPFKKSDA 615 (1236)
T ss_pred chh--------------------------------------------------------------hccCCccccccccch
Confidence 110 455677777888888
Q ss_pred hhhccchhhccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHH
Q 000292 702 VSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI 781 (1713)
Q Consensus 702 lnl~PvvK~~~~~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle 781 (1713)
....++++++.+.+.+.+ +. ..-..++|.+++..++......+++.+...+-++.+ +.+++..+++.+|..
T Consensus 616 ~~~~~v~~l~~~is~d~~---eS-----~~~~~~dav~~~~~al~k~~~~~~~~~fnp~~f~s~-~v~~~~t~~~~~a~~ 686 (1236)
T KOG1839|consen 616 IGLVPVHKLVNCISADGR---ES-----SKLSLDDAVKYATKALVKLVAVCGPYGFNPAGFYSL-AVVLYHTEDFNQAAI 686 (1236)
T ss_pred hhHHHHHHHHHhhccccc---cc-----cccchHHHHHHHHHHHHHHHhhhcccccCccccccC-ceEecCccccchhhh
Confidence 888888888888777665 11 122345899999999988888888887766655555 999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000292 782 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 861 (1713)
Q Consensus 782 ~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~e 861 (1713)
+.++++++.++.+|.++|+++..|..++.+++....+.+|+.+-.+++.+...+++..||..+..|.+.+.+-...+ +
T Consensus 687 ~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--e 764 (1236)
T KOG1839|consen 687 QQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--E 764 (1236)
T ss_pred hhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--H
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888877776 8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000292 862 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA 941 (1713)
Q Consensus 862 eAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka 941 (1713)
-++++++.+++...+.+|.++..++.+ +.|+.++.-++. |..+....+++++.. +.++..
T Consensus 765 i~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~---av~~~~t~~~~~ka~----~~~~~~------------ 824 (1236)
T KOG1839|consen 765 IALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEA---AVQKEQTTLEILKAK----DLRTQD------------ 824 (1236)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccc---cCCCccchHHHHhhh----hhhhhh------------
Confidence 899999999999999999999999888 666666554433 555555555554433 111110
Q ss_pred HHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhhccc
Q 000292 942 FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRES 1021 (1713)
Q Consensus 942 ~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~q~n~ea~~eIa~LEikyet 1021 (1713)
+. .+...++..+....+.....++..|..-....+.+.....++.+......... ++. .+.
T Consensus 825 -----~~-~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~----~~~ 885 (1236)
T KOG1839|consen 825 -----AA-AGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSK---------IAV----EKL 885 (1236)
T ss_pred -----hc-cCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccch---------hHH----HHH
Confidence 00 14455566667777888888888887766555666666666766666444432 111 111
Q ss_pred ccccccCCCCCCCCcccc-CCCCchhhhHHhhhhhcccCCCc-----cccccccccccCCCCCccc-ccccCCCcccccc
Q 000292 1022 SDEETHAPEPESDTDVNQ-GSSIPFQQQELVVEESAVEKPNI-----TEEISSAIHEEGDDGWQPV-QRLRSAGSYGRRL 1094 (1713)
Q Consensus 1022 ~kKEk~I~~L~~~k~~~e-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~g~~~~-~~~~~~~~~~~~~ 1094 (1713)
.++..+|.....+..... +..-.+...........++.... .+....-++.-.++||+++ .+++|.+..++..
T Consensus 886 ~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~ 965 (1236)
T KOG1839|consen 886 EKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVM 965 (1236)
T ss_pred HHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhh
Confidence 111111111111111111 00000100000000000111111 1111222455568999987 4588888888999
Q ss_pred cccccccccccccccccccccccccccccCCCCCceeecccCcCCCCC
Q 000292 1095 KQRRATIGKVHSYQKRNADAVIDYSSAKSSHHSSRYYLLKKRAVSHGS 1142 (1713)
Q Consensus 1095 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 1142 (1713)
+.++|.+++.|.+..+......|+..+++ +.-+++..+.|..+-.+
T Consensus 966 ~~~h~~~~~~~~~La~l~~~~~d~~~Ai~--~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 966 GVLHPEVASKYRSLAKLSNRLGDNQEAIA--QQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhcchhHHHHHHHHHHHHhhhcchHHHHH--hcccceeeechhccCCC
Confidence 99999999999999999999999988874 45678888888887544
No 3
>PF13236 CLU: Clustered mitochondria
Probab=100.00 E-value=3.1e-41 Score=378.80 Aligned_cols=197 Identities=19% Similarity=0.206 Sum_probs=164.8
Q ss_pred chHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccccCC------CCCCccccCCceeeeeccceeE
Q 000292 159 PWANEFLFVASMPCKTAEERQIRDRKAFLLHNLFVDVAIFRAIKAVHHVMGK------PELIYPSNCKILYTEIIGGLRI 232 (1713)
Q Consensus 159 dWNeEfQ~lreLP~~t~~ER~~RdR~~fkl~sdFV~aA~~gA~~VI~~~m~~------~~~~~fi~nnIffs~~vg~~~~ 232 (1713)
|||+|||+++|||++|++||+.|+|++++|++|||+||++||++||++.+.+ ...++|+|||||||++.
T Consensus 1 DWNeefQ~~~elp~~t~~er~~r~r~l~~l~~dFv~aA~~~a~~Ii~~~~~p~n~~~~~~~~~y~~nnIff~~~~----- 75 (221)
T PF13236_consen 1 DWNEEFQSLRELPRETLEERIERDRKLSKLHSDFVEAATRGAMAIIDENILPINPKEIKPGQKYLYNNIFFSFAD----- 75 (221)
T ss_pred ChHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCCCCCcCEEEECCEEEEEec-----
Confidence 5999999999999999999999999999999999999999999999954443 23579999999999862
Q ss_pred EEecccccccccccccccCcccCCcchhhHhhhhhccccccccccccCCcccccEEEEEecCeEEEEE--EecccccccC
Q 000292 233 AIMKDASNACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYIAVVK--VQERENKKVG 310 (1713)
Q Consensus 233 ~V~rD~~d~~~k~d~~~~G~~~~G~~~a~~A~~n~LkGl~ay~~~~v~gl~tlgtvvVDYrGyRvvAq--vpGi~~~~~~ 310 (1713)
|..+. +. ..+|+.+|++|++|||||+++|.+++++||+||+|||||||||||+|| +|||.+.+..
T Consensus 76 ----d~~~~-~~--------~~ggdeaA~~aa~~dLkg~~~~~~~~~~~l~~~lt~iVDY~G~Rv~AqsilPg~~~~~~~ 142 (221)
T PF13236_consen 76 ----DSRGI-YE--------NLGGDEAARKAAGHDLKGVNALNQADIPGLHTPLTAIVDYRGYRVLAQSILPGILNREQE 142 (221)
T ss_pred ----Ccccc-cc--------cccccHHHHHHhhccHHHHHHHHhCCCCCCcccCEEEEEeCCEEEEEEecCCcCCCCCCC
Confidence 22111 11 156788999999999999999999999999999999999999999999 7998854322
Q ss_pred CCccccccccCcCccccccc-----------cccccccccccCCCCCCCCCCCCCcchhhcc--cchhHhHHHHHhhhhh
Q 000292 311 PLFQSIELEQPEGGANALNI-----------NSLRLLIHETTTLEDNKPAPNLQNLEREELN--ASQMFVERLLEESIAK 377 (1713)
Q Consensus 311 ~~~~~i~~~~~egg~~~l~~-----------~~L~ll~H~v~~~~~~~~~~~~~~~d~~~l~--~sR~YvlDl~R~~~~~ 377 (1713)
+...+ +..++|.++.+. +.|+|+.|.|++.++ .+.+++++|.+++. |+|+|||||+|++|++
T Consensus 143 ~~vvY---Gs~d~g~~i~~~~~~~~~l~~~a~~l~Lk~H~v~~~~~--~~~l~~s~d~kg~~G~D~R~YilDl~R~~P~d 217 (221)
T PF13236_consen 143 STVVY---GSSDGGKTIHSDEEFHELLKKIAKALNLKPHKVGDSEG--SVELYGSADIKGIIGSDGRYYILDLARTFPPD 217 (221)
T ss_pred ceEEE---CCcCCCCeecCCHHHHHHHHHHHHHhCcCcceecCCCC--cEEEEeeeeeEEEEcCCCCEEEEeccccCCCC
Confidence 22222 445667766653 799999999986664 67899999999986 8999999999999976
Q ss_pred h
Q 000292 378 L 378 (1713)
Q Consensus 378 l 378 (1713)
.
T Consensus 218 ~ 218 (221)
T PF13236_consen 218 V 218 (221)
T ss_pred c
Confidence 4
No 4
>PF12807 eIF3_p135: Translation initiation factor eIF3 subunit 135
Probab=99.97 E-value=2e-30 Score=281.55 Aligned_cols=147 Identities=35% Similarity=0.662 Sum_probs=131.0
Q ss_pred cCCCCCCCcchHHHHHHhcccccchhHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 000292 544 SLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLS-EKLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNL 622 (1713)
Q Consensus 544 ~~~~~P~DG~sLte~lH~rGINmRYLG~Va~l~-~~L~~i~~l~~~EMIaRA~KhILRa~lr~l~~~~~la~AIahfLNc 622 (1713)
++++.|+||.+|+++||++||||||||+|++++ .++++++.||++|||+|++||+||.++|. .+...+..+|+|||||
T Consensus 2 ~~~~~p~Dg~~L~~~lH~~GIN~RyLG~v~~~~~~~~~~l~~l~~~EmiaR~~K~i~r~~l~~-~~~~~~~~~v~~~lN~ 80 (169)
T PF12807_consen 2 SLSVSPIDGQSLTEILHRRGINMRYLGKVAKLIKSSLPHLRRLCLQEMIARAAKHILREYLRS-VPQSELSSAVSHFLNC 80 (169)
T ss_pred CccccCcccHHHHHHHHHcCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchhhHHHHHHHHHHH
Confidence 467889999999999999999999999999986 46899999999999999999999999999 4778999999999999
Q ss_pred hhccccCCCCCCC-----------------CCCchhHHHHHHHHHHHHhcccccCCChh---hhhHHHHHHHHHHHhhhh
Q 000292 623 MLGVHESDGLNKS-----------------HNVHPLVWRWLELFLMKRYEWDLNGLNFK---DVRKFAILRGLCHKVGIE 682 (1713)
Q Consensus 623 LLG~~~~~~~~~~-----------------~~~~~~lw~~I~~elk~ry~y~L~~~~~~---~l~k~aLLReLc~KlGIq 682 (1713)
|||...+...... .-....+|++|..++..+|+|+++.++.+ .++++++||+||+++|||
T Consensus 81 llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~l~~~I~~ev~~rf~y~l~~~~~~~~~~~~~~~LLR~ic~k~GiQ 160 (169)
T PF12807_consen 81 LLGSSSNSKPKKEKKEKNSNSKSKSDSSWSKLTPSSLWSEIEKEVKSRFRYELPEDWFDEKYGLQKIQLLREICQKTGIQ 160 (169)
T ss_pred hhCCCccccccccccchhccccccccchhhhcCcHHHHHHHHHHHHHhcCCcCchHHhhhhccccHHHHHHHHHHHhCeE
Confidence 9998776521100 01134699999999999999999999998 899999999999999999
Q ss_pred hhcccccCC
Q 000292 683 LVSRDFDMD 691 (1713)
Q Consensus 683 L~~R~Y~fd 691 (1713)
+.+|+|+|+
T Consensus 161 l~~r~Y~f~ 169 (169)
T PF12807_consen 161 LLARDYDFT 169 (169)
T ss_pred eeeecCCCC
Confidence 999999986
No 5
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.93 E-value=7.7e-24 Score=261.25 Aligned_cols=284 Identities=25% Similarity=0.292 Sum_probs=256.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
...+..+|..|..+|+|+.|+.++++|+.+..+..|.+|+.++.++..+|.+|..+++|.+|+.+|++|+.+.+.++|.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 44555589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
||..+.++.|||..|...|+|++|..|+++|++|+++.+|..|+.+...+.+++.++..++++++|+.+|+++++++...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCC
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE--SKAFEQQEAARNGTRKP 955 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~--qka~e~AeAl~~~~~~~ 955 (1713)
+|.+++.++..+.+||.+|..+|+|++|.+++++|+.+.++..|..+..+...+..|+..+ .+.+..+..+.......
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988887777777776443 33333333333322222
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhc
Q 000292 956 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1002 (1713)
Q Consensus 956 ~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~ 1002 (1713)
. .....+++.+...|.+|+.+|.++|+|++|+++.++++..++.-.
T Consensus 439 ~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~ 484 (508)
T KOG1840|consen 439 M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRL 484 (508)
T ss_pred H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcC
Confidence 2 345667788999999999999999999999999999999888766
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.87 E-value=3.4e-20 Score=229.15 Aligned_cols=255 Identities=24% Similarity=0.266 Sum_probs=227.7
Q ss_pred cCCCCCCchHHHHhhhccchhhc-cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000292 689 DMDSPSPFRKIDVVSLVPVHKQA-ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLA 767 (1713)
Q Consensus 689 ~fdsa~~F~~eDIlnl~PvvK~~-~~~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA 767 (1713)
+|+.+....+..+..+ .+.. ......+..+...|..|+.++++.+|+.+|++||++.+.++|.+|+.++.++.+||
T Consensus 214 ~~e~A~~l~k~Al~~l---~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa 290 (508)
T KOG1840|consen 214 RLEKAEPLCKQALRIL---EKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA 290 (508)
T ss_pred cHHHHHHHHHHHHHHH---HHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3566666666544221 1111 12233345555689999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 000292 768 VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 847 (1713)
Q Consensus 768 ~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~ 847 (1713)
.+|+.+|+|++|..++++|+.|+++.+|..++.+...+.+++.++..++++++|+.+|+++++++....|.+|+.++.++
T Consensus 291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 000292 848 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 927 (1713)
Q Consensus 848 ~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t 927 (1713)
.|||.+|..+|+|++|.++|++|+.+.++..|..+..+...+.+||..|.+++++.+|.+.|.++..|. +..|++|+.+
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~ 449 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDV 449 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCch
Confidence 999999999999999999999999999999898899999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000292 928 QDAAAWLEYFESKAFEQQEA 947 (1713)
Q Consensus 928 ~ea~~~La~L~qka~e~AeA 947 (1713)
...+..|+.++...+....+
T Consensus 450 ~~~~~nL~~~Y~~~g~~e~a 469 (508)
T KOG1840|consen 450 TYTYLNLAALYRAQGNYEAA 469 (508)
T ss_pred HHHHHHHHHHHHHcccHHHH
Confidence 99999999777655544433
No 7
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=2.2e-19 Score=214.69 Aligned_cols=241 Identities=19% Similarity=0.142 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 795 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG 795 (1713)
.....++++|.+|...+.|+.|+..|++|+.+ .|..|.++.+||.+|+.+|+.+-|+..|++||.+
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~------ 315 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL------ 315 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc------
Confidence 34667899999999999999999999999987 5777899999999999999999999999999986
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000292 796 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 875 (1713)
Q Consensus 796 ~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~e 875 (1713)
.|....+|+|||..+...|+..+|..+|.+||++. ++| +.+++|||.+|.++|.+++|..+|++|+++.
T Consensus 316 --~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-----p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v~- 384 (966)
T KOG4626|consen 316 --QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-----PNH---ADAMNNLGNIYREQGKIEEATRLYLKALEVF- 384 (966)
T ss_pred --CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-----Ccc---HHHHHHHHHHHHHhccchHHHHHHHHHHhhC-
Confidence 58888999999999999999999999999999973 344 6778999999999999999999999999987
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 876 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 955 (1713)
Q Consensus 876 k~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~ 955 (1713)
+..+.++.+||.+|.++|++++|+.+|++|+.| .+...+++..++..+...++...++.....+
T Consensus 385 -------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA- 448 (966)
T KOG4626|consen 385 -------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRA- 448 (966)
T ss_pred -------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHH-
Confidence 678899999999999999999999999999977 3556777777776655555554444332221
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhc
Q 000292 956 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1002 (1713)
Q Consensus 956 ~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~ 1002 (1713)
..-.+..+++..+||.+|...|+..+|+..|+.++++....-
T Consensus 449 -----I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 449 -----IQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred -----HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 122347889999999999999999999999999999987654
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=2.1e-19 Score=214.90 Aligned_cols=239 Identities=19% Similarity=0.158 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
|-.+-++|-++..+|+...|+.+|++|+.+ +|..+.+|.+||.+|..++.|++|+..|++|+.+
T Consensus 218 AiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-------- 281 (966)
T KOG4626|consen 218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-------- 281 (966)
T ss_pred eeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------
Confidence 445666788888999999999999999987 6788899999999999999999999999999986
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
.|..+.++.|||.+|+.+|..+.|+..|++||++ .|....+|+|||.++...|+..+|..+|.+||.++
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--- 350 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--- 350 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC---
Confidence 5778999999999999999999999999999986 46778899999999999999999999999999987
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 957 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~ 957 (1713)
+..+.+.++||.+|..+|.++.|..+|++|++++ +....+...|+.++++++...+++........
T Consensus 351 -----p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr- 416 (966)
T KOG4626|consen 351 -----PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR- 416 (966)
T ss_pred -----CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-
Confidence 4557889999999999999999999999999875 34456667788888887777776654332221
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhc
Q 000292 958 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1002 (1713)
Q Consensus 958 a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~ 1002 (1713)
-.+..++.|.++|..|..+|+...|+..|.+|+.+.....
T Consensus 417 -----I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 417 -----IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred -----cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence 1246788999999999999999999999999999987765
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.67 E-value=6.4e-15 Score=190.68 Aligned_cols=247 Identities=13% Similarity=0.055 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000292 715 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 794 (1713)
Q Consensus 715 s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~l 794 (1713)
...+..++.+|..++.+|++++|+..|++++.+ +|....+|..+|.++..+|++++|+.++++++.+
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----- 394 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL----- 394 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 345667888899999999999999999999987 4666788999999999999999999999999876
Q ss_pred CCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 795 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 795 G~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
+|....+|+++|.+|+.+|++++|+.+|++++.+ .|.....+.++|.++..+|++++|+.+|++++...
T Consensus 395 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 395 ---NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3555778999999999999999999999999986 35556778999999999999999999999999764
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHhcC
Q 000292 875 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE--SKAFEQQEAARNGT 952 (1713)
Q Consensus 875 ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~--qka~e~AeAl~~~~ 952 (1713)
+....++..+|.+|..+|++++|+..|++|+.+..... ..+............+. .+.++.+..+....
T Consensus 464 --------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 464 --------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred --------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33456788899999999999999999999997753311 11111111111111111 23333333332221
Q ss_pred CCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhc
Q 000292 953 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1002 (1713)
Q Consensus 953 ~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~ 1002 (1713)
... .+....++..+|.+|..+|++++|+.+|++++++..+..
T Consensus 535 l~l--------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 535 LII--------DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred Hhc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 111 112234678899999999999999999999999987644
No 10
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.65 E-value=2.6e-15 Score=173.87 Aligned_cols=279 Identities=15% Similarity=0.097 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 795 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG 795 (1713)
.+...+-++|..|+..++|++|++|...-|.+.+.+ | +...-|.+..+||.++-.+|.|++|+.++.+-|.+.+++
T Consensus 53 tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l-g-dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL-- 128 (639)
T KOG1130|consen 53 TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL-G-DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL-- 128 (639)
T ss_pred HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh-c-chhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--
Confidence 345567788999999999999999999888876655 3 334457888999999999999999999999999998875
Q ss_pred CCCchhHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000292 796 LDHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 855 (1713)
Q Consensus 796 ~Dhp~ta~ay~nLA~vy~~lG~--------------------~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~ 855 (1713)
.|...-..+|+|||.+|...|+ ++.|.++|..-|++.+.. .+......+|.|||+.|+
T Consensus 129 gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa~GnLGNTyY 206 (639)
T KOG1130|consen 129 GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL--GDRLAQGRAYGNLGNTYY 206 (639)
T ss_pred hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh--hhHHhhcchhcccCceee
Confidence 3455667999999999999886 466778888888877664 234456788999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000292 856 GLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 935 (1713)
Q Consensus 856 ~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La 935 (1713)
-+|+|++|+.+.+.-|.+.++. | +....-.++.+||++|.-+|+|+.|++||++++.+..++ |... ..+.+...|+
T Consensus 207 lLGdf~~ai~~H~~RL~ia~ef-G-DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel-g~r~-vEAQscYSLg 282 (639)
T KOG1130|consen 207 LLGDFDQAIHFHKLRLEIAQEF-G-DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL-GNRT-VEAQSCYSLG 282 (639)
T ss_pred eeccHHHHHHHHHHHHHHHHHh-h-hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh-cchh-HHHHHHHHhh
Confidence 9999999999999999999665 4 334455789999999999999999999999999998765 4332 2233333444
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhcCC
Q 000292 936 YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQD 1004 (1713)
Q Consensus 936 ~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~q~ 1004 (1713)
..+.-..+.++|+.+..+...++....+.......++-||.+|...|..++|+.+.++.+++...++.-
T Consensus 283 Ntytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~ 351 (639)
T KOG1130|consen 283 NTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDT 351 (639)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCc
Confidence 333223333444443333333444444555667789999999999999999999999999999888733
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.58 E-value=1.2e-13 Score=179.03 Aligned_cols=240 Identities=17% Similarity=0.123 Sum_probs=174.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------------
Q 000292 721 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL------------- 787 (1713)
Q Consensus 721 LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL------------- 787 (1713)
++++|.+|+.+|++++|+..+.+++.+ .|....++..+|.+|..+|++++|+..+.+++
T Consensus 163 ~~n~a~~~~~l~~~~~Ai~~~~~al~l--------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 163 YSNRAACHNALGDWEKVVEDTTAALEL--------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 556788888899999999999998876 45567788889999999999888876543322
Q ss_pred --------------------------------------------------------------------------------
Q 000292 788 -------------------------------------------------------------------------------- 787 (1713)
Q Consensus 788 -------------------------------------------------------------------------------- 787 (1713)
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence
Q ss_pred HHHHHhcC--CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000292 788 DINERELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 865 (1713)
Q Consensus 788 ~I~Er~lG--~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle 865 (1713)
..+++.+. ..++....++.++|.+|..+|++++|+.+|++++.+ +|....++.++|.++..+|++++|+.
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 12222221 124556677888999999999999999999999875 35566788899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--HHH
Q 000292 866 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK--AFE 943 (1713)
Q Consensus 866 ~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qk--a~e 943 (1713)
+|++++++. + ....+++.+|.+|..+|++++|+.+|++++.+ .+++.. ....++.+..+ .++
T Consensus 387 ~~~~al~~~-----p---~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-----~P~~~~---~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 387 DFDKALKLN-----S---EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-----DPDFIF---SHIQLGVTQYKEGSIA 450 (615)
T ss_pred HHHHHHHhC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CccCHH---HHHHHHHHHHHCCCHH
Confidence 999998763 2 33567888999999999999999999999865 344433 23334433333 333
Q ss_pred HHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh
Q 000292 944 QQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1000 (1713)
Q Consensus 944 ~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dS 1000 (1713)
.+........ ...+....++..+|.++..+|++++|+.+|++++++...
T Consensus 451 eA~~~~~~al--------~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 451 SSMATFRRCK--------KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHHHH--------HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 3332222111 111234567899999999999999999999999998755
No 12
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.57 E-value=2.6e-14 Score=165.72 Aligned_cols=273 Identities=14% Similarity=0.122 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
...|-..|.-++..|++...+.+|+.|++.-. .+-.....+|..||.+|+.+++|++|++|..--|.+.+ .+| |
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGT----eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar-~lg-d 90 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGT----EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLAR-LLG-D 90 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcc----hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHH-Hhc-c
Confidence 33444557788899999999999999998621 22344567899999999999999999999888777654 333 4
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC------------------
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN------------------ 859 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~------------------ 859 (1713)
...-+.+..|||..+-.+|.|++|+.+..+-|.+.++.. +...-..+|+|||.+|...|+
T Consensus 91 klGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~ 168 (639)
T KOG1130|consen 91 KLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVT 168 (639)
T ss_pred hhccccccccccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHH
Confidence 455678889999999999999999999999999988862 334557899999999998775
Q ss_pred --HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--
Q 000292 860 --VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE-- 935 (1713)
Q Consensus 860 --~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La-- 935 (1713)
++.|.++|++-|++.+++ .+......+|-+||+.|+.+|+|+.|+.+.+.-+.|.++. |.. .....+...|+
T Consensus 169 ~al~~Av~fy~eNL~l~~~l--gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-GDr-AaeRRA~sNlgN~ 244 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKL--GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-GDR-AAERRAHSNLGNC 244 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-hhH-HHHHHhhcccchh
Confidence 345667777777776554 3445566889999999999999999999999999998765 322 22223333333
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhcCC
Q 000292 936 YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQD 1004 (1713)
Q Consensus 936 ~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~q~ 1004 (1713)
++....++.+... .......++...+....+...+-||..|....++++|+.|+++-++|..++...
T Consensus 245 hiflg~fe~A~eh--YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr 311 (639)
T KOG1130|consen 245 HIFLGNFELAIEH--YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDR 311 (639)
T ss_pred hhhhcccHhHHHH--HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222222211 111122233334444566788999999999999999999999999999888733
No 13
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.50 E-value=4.9e-12 Score=139.27 Aligned_cols=170 Identities=22% Similarity=0.237 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 795 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG 795 (1713)
..+..++.+|..++..|++++|+.++++++.. ++....++..+|.+|..+|++++|+.++++++.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------ 94 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Confidence 34677888899999999999999999999875 3555678899999999999999999999999886
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000292 796 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 875 (1713)
Q Consensus 796 ~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~e 875 (1713)
++.....+.++|.+|...|++++|+.+|++++.. ..++.....+.++|.++...|++++|..+|++++...
T Consensus 95 --~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 165 (234)
T TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID- 165 (234)
T ss_pred --CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 2444578899999999999999999999999874 2234456678889999999999999999999999864
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 876 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 876 k~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
++ ....+..+|.++...|++++|+.++++++.+
T Consensus 166 ----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 166 ----PQ---RPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred ----cC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 2456778999999999999999999988754
No 14
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2.4e-13 Score=167.34 Aligned_cols=247 Identities=12% Similarity=0.059 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------------HHHhcCCCChhHHHHHHHHHHHHH
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAK--------------------------LVAVCGPYHRMTAGAYSLLAVVLY 771 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l--------------------------~eqv~G~dhp~~A~ay~~LA~vy~ 771 (1713)
...+.++|+.|+.+++|++|..+|+.+-.+ +.+.+-...+....+|..+|.+|.
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 367778899999999999999999887653 111111234555678899999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000292 772 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 851 (1713)
Q Consensus 772 ~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA 851 (1713)
.+++++.|+++|++|+.+ +|..+.+|..+|.=+.....||+|..+|+.||.+ .|..-.+|+.||
T Consensus 433 LQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG 496 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLG 496 (638)
T ss_pred hhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhh
Confidence 999999999999999987 5778899999999999999999999999999975 456678999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000292 852 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAA 931 (1713)
Q Consensus 852 ~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~ 931 (1713)
.+|.++++++.|+-+|++|+++. |........+|.+|.++|+.++|+++|++|+. +.+.++....-.
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~IN--------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~-----ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEIN--------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH-----LDPKNPLCKYHR 563 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCC--------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh-----cCCCCchhHHHH
Confidence 99999999999999999999886 44456667789999999999999999999984 455555444333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhc
Q 000292 932 AWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1002 (1713)
Q Consensus 932 ~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~ 1002 (1713)
..+.....+..+..+.+.... .--+..+.++..+|.+|...|+.+.|+..|--|+.+..+-.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk---------~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELK---------ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHH---------HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 333222222111111111110 01123455799999999999999999999988888776533
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.45 E-value=8e-12 Score=151.89 Aligned_cols=243 Identities=11% Similarity=0.022 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
+...+..|..+...|++++|+.+|++++.. +|....++..+|.+|..+|++++|+.++++++... ...
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~ 102 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLT 102 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCC
Confidence 444556677888888999999999888875 34556778888999999999999998888776521 011
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
......++..||.+|...|++++|+.+|.+++.. ++....++..++.++...|++++|+..++++++....
T Consensus 103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~- 173 (389)
T PRK11788 103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD- 173 (389)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-
Confidence 1223467888899999999999999888888763 3444567788888888889999998888887764311
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCC
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES--KAFEQQEAARNGTRKP 955 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~q--ka~e~AeAl~~~~~~~ 955 (1713)
......+..+..+|.++...|++++|+.++++++++. ++.. .+...++.+.. +..+.+.........
T Consensus 174 --~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~- 242 (389)
T PRK11788 174 --SLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-----PQCV---RASILLGDLALAQGDYAAAIEALERVEE- 242 (389)
T ss_pred --cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-----cCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 1122344556778888888889988988888887642 3322 23333333333 333333222211110
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 956 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 998 (1713)
Q Consensus 956 ~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~ 998 (1713)
.+......++..++.+|...|++++|+.++++++++.
T Consensus 243 ------~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 243 ------QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred ------HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 0111334567778888888888888888888877753
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.42 E-value=2.2e-11 Score=148.14 Aligned_cols=243 Identities=13% Similarity=0.033 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
....++.+|..+..+|++++|+.++++++..- .........++..||.+|..+|++++|+.+|.+++..
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------- 136 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE------- 136 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-------
Confidence 35567788999999999999999999887631 0111234568899999999999999999999999764
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 876 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek 876 (1713)
++....++..|+.+|...|++++|++++++++.... ..........+.++|.++...|++++|+.+|+++++..
T Consensus 137 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 210 (389)
T PRK11788 137 -GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-- 210 (389)
T ss_pred -CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--
Confidence 345567899999999999999999999999876421 11122345567889999999999999999999999864
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCC
Q 000292 877 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--ESKAFEQQEAARNGTRK 954 (1713)
Q Consensus 877 ~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L--~qka~e~AeAl~~~~~~ 954 (1713)
+....++..+|.+|...|++++|+.++++++.. ++.+. ......+... ..+..+.+.........
T Consensus 211 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~--~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 211 ------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-----DPEYL--SEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred ------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----ChhhH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223457788999999999999999999998864 22221 1222233322 22333333222211100
Q ss_pred CchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 955 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 998 (1713)
Q Consensus 955 ~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~ 998 (1713)
. .. .. ..+..++.++...|++++|+.+++++++..
T Consensus 278 ~-----~p---~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 278 E-----YP---GA-DLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred h-----CC---Cc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 0 11 11 234789999999999999999999998874
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.40 E-value=2e-11 Score=159.17 Aligned_cols=247 Identities=13% Similarity=-0.009 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN------- 790 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~------- 790 (1713)
...++.+|..+..+|++++|+..|++++.+ .|....++..+|.++..+|++++|+..+++++...
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~ 181 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI 181 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 334566677788888888888888888776 34445566677777777777777777666554321
Q ss_pred -------------------HHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000292 791 -------------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 851 (1713)
Q Consensus 791 -------------------Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA 851 (1713)
++.+..+.......+..++.++...|++++|+..|.+++.+ +|....+++++|
T Consensus 182 ~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg 253 (656)
T PRK15174 182 ATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLG 253 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHH
Confidence 11111111111123345567777788888888888887764 344567788899
Q ss_pred HHHHHCCCHHH----HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 000292 852 MMEEGLGNVHV----ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 927 (1713)
Q Consensus 852 ~iy~~lG~~ee----Ale~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t 927 (1713)
.+|..+|++++ |+.+|++++++. |....++..+|.+|...|++++|+.++++++++ .+++...
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~~a 320 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLPYV 320 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence 99999999986 788999888765 345678888999999999999999999999864 4666543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhc
Q 000292 928 QDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1002 (1713)
Q Consensus 928 ~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~ 1002 (1713)
...++....+.++..++......... ..+.....+..+|.++...|++++|+.+|++++++.....
T Consensus 321 ---~~~La~~l~~~G~~~eA~~~l~~al~------~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 321 ---RAMYARALRQVGQYTAASDEFVQLAR------EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHHH------hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 33344333333333333322111000 0112223556678899999999999999999999876654
No 18
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.39 E-value=4.8e-11 Score=141.47 Aligned_cols=226 Identities=12% Similarity=0.017 Sum_probs=160.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 000292 732 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 811 (1713)
Q Consensus 732 G~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~v 811 (1713)
+..+.++..+.++|.... .+....+..|+.+|.+|..+|++++|+..|++|+.+ .|....+|+++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~ 107 (296)
T PRK11189 40 LQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIY 107 (296)
T ss_pred hHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHH
Confidence 355677777777775421 233456889999999999999999999999999986 46678899999999
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 000292 812 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA 891 (1713)
Q Consensus 812 y~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~n 891 (1713)
|..+|++++|+..|++++++ .|....++.++|.++...|++++|+..|++++++. ++++.. ..+
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-----P~~~~~-~~~-- 171 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-----PNDPYR-ALW-- 171 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHH-HHH--
Confidence 99999999999999999986 34456788999999999999999999999999875 444421 111
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCchhhhhcCCccHHH
Q 000292 892 IAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR--KPDASIASKGHLSVSD 969 (1713)
Q Consensus 892 LA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~--~~~~a~a~~~~~svae 969 (1713)
..++...+++++|+..+.+++.. +.++.... .+..+..+....++++..... ...... .....+
T Consensus 172 -~~l~~~~~~~~~A~~~l~~~~~~----~~~~~~~~-----~~~~~~lg~~~~~~~~~~~~~~~~~~~~l----~~~~~e 237 (296)
T PRK11189 172 -LYLAESKLDPKQAKENLKQRYEK----LDKEQWGW-----NIVEFYLGKISEETLMERLKAGATDNTEL----AERLCE 237 (296)
T ss_pred -HHHHHccCCHHHHHHHHHHHHhh----CCccccHH-----HHHHHHccCCCHHHHHHHHHhcCCCcHHH----HHHHHH
Confidence 22345678899999999776532 12222111 122222222111222211110 111111 123567
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHh
Q 000292 970 LLDYINPSHDTKGRNVSTLKRKTYVAKVKG 999 (1713)
Q Consensus 970 lL~~LA~~y~~qGdyeEAl~yyeKALeL~d 999 (1713)
.|.++|.+|..+|++++|+.+|++++++..
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999998763
No 19
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=8e-10 Score=132.09 Aligned_cols=246 Identities=15% Similarity=0.065 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
.+..++..|..++-.|++-.|...|..++.+. +.....|..+|.+|....+..+....|.+|..+
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~--------~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l------- 389 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD--------PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL------- 389 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--------cccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-------
Confidence 47788888999999999999999999999873 333445888999999999999999999999886
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 876 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek 876 (1713)
+|.....|++-|.+++-+++|++|+.-|++|+.+ .|..+..|..++.++.++++++++...|+++.+-+
T Consensus 390 -dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-- 458 (606)
T KOG0547|consen 390 -DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-- 458 (606)
T ss_pred -CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 4666778999999999999999999999999986 47778889999999999999999999999998766
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 877 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD-DLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 955 (1713)
Q Consensus 877 ~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~d-h~~t~ea~~~La~L~qka~e~AeAl~~~~~~~ 955 (1713)
|....+|...|+++..+++|++|+++|..|+.+-....+-. ....+-....+..-..+...++..+.......
T Consensus 459 ------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 459 ------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred ------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc
Confidence 44556777789999999999999999999997754421110 11110000000000112222232222211111
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhc
Q 000292 956 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1002 (1713)
Q Consensus 956 ~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~ 1002 (1713)
+ +.-...+..||.+..++|+.++|+++|++++.+.++..
T Consensus 533 D--------pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 533 D--------PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES 571 (606)
T ss_pred C--------chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence 1 13345788899999999999999999999999988754
No 20
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=3e-11 Score=133.92 Aligned_cols=167 Identities=20% Similarity=0.158 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 795 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG 795 (1713)
.-+...+.+|..|+.+|++..|...+++||++ +|....++..+|.+|..+|+.+.|.+.|++|+.+
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl------ 98 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL------ 98 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc------
Confidence 34677888999999999999999999999987 5777889999999999999999999999999987
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000292 796 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 875 (1713)
Q Consensus 796 ~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~e 875 (1713)
+|....+++|.|.+++.+|+|++|..+|.+|+. .+..+....++-|+|.|..+.|+++.|..+|+++|++.
T Consensus 99 --~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d- 169 (250)
T COG3063 99 --APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD- 169 (250)
T ss_pred --CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-
Confidence 678889999999999999999999999999997 46677788999999999999999999999999999986
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000292 876 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 912 (1713)
Q Consensus 876 k~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekA 912 (1713)
+........++..+...|+|..|..++++-
T Consensus 170 -------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 170 -------PQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred -------cCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 233455667899999999999999887653
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.36 E-value=6.2e-11 Score=154.68 Aligned_cols=243 Identities=12% Similarity=0.024 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
...++.+|...+..|++++|+..|++++.+ +|....++..+|.++..+|++++|+..|++++.+
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l-------- 139 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAV--------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA-------- 139 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 455677788888999999999999999987 4666778999999999999999999999999986
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--------------------------HHhcCCCChhHHHHHHHHH
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL--------------------------HLTCGPSHPNTAATYINVA 851 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~--------------------------~~i~G~dhP~~a~a~~NLA 851 (1713)
.|....++..+|.+|...|++++|+..+++++... +.....+.+.....+..++
T Consensus 140 ~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~ 219 (656)
T PRK15174 140 FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAV 219 (656)
T ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 35566778888999999999999988887665431 0000000001111223456
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHHHHhcCCCCHHH
Q 000292 852 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL----SVQHEQTTLQILRAKLGPDDLRT 927 (1713)
Q Consensus 852 ~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~ee----Ale~lekALeI~kk~LG~dh~~t 927 (1713)
.++...|++++|+..|+++++.. +....++++||.+|..+|++++ |+.++++++++ .+++...
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~~a 286 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARG--------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNVRI 286 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCHHH
Confidence 66777777777777777777542 3345677888999999999985 78888888754 3555433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 928 QDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 998 (1713)
Q Consensus 928 ~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~ 998 (1713)
...++.+........++......... ..+....++..+|.+|..+|++++|+..|++++...
T Consensus 287 ---~~~lg~~l~~~g~~~eA~~~l~~al~------l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 287 ---VTLYADALIRTGQNEKAIPLLQQSLA------THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33334333333333332221111000 112334567889999999999999999999888753
No 22
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=8.2e-11 Score=139.75 Aligned_cols=190 Identities=19% Similarity=0.211 Sum_probs=162.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000292 725 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 804 (1713)
Q Consensus 725 A~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~a 804 (1713)
|..|...++.++|+.+|++||++ +|....++..+|.-|..+.+...|+..|++|+++ .|...++
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyRA 400 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYRA 400 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHHH
Confidence 45666778899999999999988 6778889999999999999999999999999998 4666789
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000292 805 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 884 (1713)
Q Consensus 805 y~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~ 884 (1713)
++.||..|.-++...=|+-||++|+.+ .+ .....+..||.+|.++++.++|+++|.+|+.....
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~-----kP---nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-------- 464 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALEL-----KP---NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-------- 464 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhc-----CC---CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc--------
Confidence 999999999999999999999999986 23 34566777999999999999999999999986411
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000292 885 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA 947 (1713)
Q Consensus 885 tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeA 947 (1713)
...++..||.+|..++++.+|.++|++.++.. ..-|...+.+..+..||+....+.....++
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 34678899999999999999999999999877 455777888888999988666555444433
No 23
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.34 E-value=5.1e-11 Score=164.68 Aligned_cols=241 Identities=13% Similarity=0.067 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 798 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dh 798 (1713)
..+..+|..+..+|++++|+.+|++++.+ +|....+++.||.+|..+|++++|+..+++++.. +
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--------~ 525 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--------K 525 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------C
Confidence 35667889999999999999999999987 3555678899999999999999999999999864 3
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHH-------------------------------------HHHHHhcCCCCh
Q 000292 799 PDTMKSYGDLAVFYYRLQHTELALKYVKRAL-------------------------------------YLLHLTCGPSHP 841 (1713)
Q Consensus 799 p~ta~ay~nLA~vy~~lG~~eeALe~yerAL-------------------------------------eL~~~i~G~dhP 841 (1713)
|.....++.+|.++...+++++|+.+++++. .+++ .+|
T Consensus 526 P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p 600 (1157)
T PRK11447 526 PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQP 600 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCC
Confidence 4455667778888888888888888776531 1111 234
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000292 842 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 921 (1713)
Q Consensus 842 ~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG 921 (1713)
.....+.++|.+|...|++++|+.+|+++++.. |....++..+|.+|...|++++|+++++++++. .
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--------P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-----~ 667 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--------PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-----A 667 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----C
Confidence 444567889999999999999999999999864 334567889999999999999999999977643 3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000292 922 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 996 (1713)
Q Consensus 922 ~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALe 996 (1713)
+++......... .+...+..+.+..+........ .........+.++..+|.++..+|++++|+.+|++++.
T Consensus 668 p~~~~~~~~la~-~~~~~g~~~eA~~~~~~al~~~--~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 668 NDSLNTQRRVAL-AWAALGDTAAAQRTFNRLIPQA--KSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCChHHHHHHHH-HHHhCCCHHHHHHHHHHHhhhC--ccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455544333322 2223333444433333221110 00000112345677889999999999999999999975
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.34 E-value=1e-10 Score=154.38 Aligned_cols=175 Identities=21% Similarity=0.205 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI------- 789 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I------- 789 (1713)
....++..|..++.+|++++|+..+.+++.. +|....+++.+|.+|..+|++++|+..+++++..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 92 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQV 92 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhh
Confidence 4566788899999999999999999999976 4556778999999999999999999999988753
Q ss_pred --------------------HHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 000292 790 --------------------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 849 (1713)
Q Consensus 790 --------------------~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~N 849 (1713)
+......+.+.....+..+|.+|...|++++|+.+|++++.. +|....++..
T Consensus 93 ~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~ 164 (899)
T TIGR02917 93 LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLG 164 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHH
Confidence 111112244556677888999999999999999999998864 2333556788
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 850 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 850 LA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|+..+++++.+
T Consensus 165 la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 222 (899)
T TIGR02917 165 LAQLALAENRFDEARALIDEVLTAD--------PGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 8999999999999999998887653 223456777888888899999999888888754
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.33 E-value=2.5e-10 Score=157.99 Aligned_cols=173 Identities=17% Similarity=0.059 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-----------HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM-----------TAGAYSLLAVVLYHTGDFNQATIYQQK 785 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~-----------~A~ay~~LA~vy~~lGd~deAle~~~K 785 (1713)
+...++.+|.+++.+|++++|+.+|++++.+. +++.. ....+..+|.++...|++++|+.+|++
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35677888999999999999999999999863 22221 112334568899999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH----------------------
Q 000292 786 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT---------------------- 843 (1713)
Q Consensus 786 AL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~---------------------- 843 (1713)
++.+ +|....++.+||.+|..+|++++|+++|++++.+. +++...
T Consensus 377 Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-----p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 377 ARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-----PGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 9986 35566789999999999999999999999999752 111110
Q ss_pred -----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHH
Q 000292 844 -----------------AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSV 906 (1713)
Q Consensus 844 -----------------a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAl 906 (1713)
...+..+|.++...|++++|+.+|++++++. ++ ...+++.+|.+|..+|++++|+
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-----P~---~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-----PG---SVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHcCCHHHHH
Confidence 1234457778888999999999999999875 33 3457889999999999999999
Q ss_pred HHHHHHHHH
Q 000292 907 QHEQTTLQI 915 (1713)
Q Consensus 907 e~lekALeI 915 (1713)
..+++++..
T Consensus 516 ~~l~~al~~ 524 (1157)
T PRK11447 516 ALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHc
Confidence 999998753
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=2.5e-11 Score=149.83 Aligned_cols=226 Identities=16% Similarity=0.132 Sum_probs=166.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH----------H-----------
Q 000292 733 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN----------E----------- 791 (1713)
Q Consensus 733 ~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~----------E----------- 791 (1713)
+..+|+..|++ +...+..+..++..+|.+|+.+++|++|..+|+.+-.+. -
T Consensus 334 ~~~~A~~~~~k--------lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~ 405 (638)
T KOG1126|consen 334 NCREALNLFEK--------LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA 405 (638)
T ss_pred HHHHHHHHHHh--------hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH
Confidence 34455555555 223466677899999999999999999999998864331 1
Q ss_pred -----HhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000292 792 -----RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 866 (1713)
Q Consensus 792 -----r~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~ 866 (1713)
+.+-..++....++..+|.||..+++++.|+++|+||+.+ +|..+.+|..+|.=+....++|.|..+
T Consensus 406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~ 477 (638)
T KOG1126|consen 406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKS 477 (638)
T ss_pred HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHH
Confidence 1111234556677889999999999999999999999986 567788889999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000292 867 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE 946 (1713)
Q Consensus 867 lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~Ae 946 (1713)
|++||.+. +....+||-||.+|.++++++.|+-+|++|++| .|........++..+.+.....+
T Consensus 478 fr~Al~~~--------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 478 FRKALGVD--------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred HHhhhcCC--------chhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhH
Confidence 99999875 344578999999999999999999999999976 23333444445544444444444
Q ss_pred HHHh--cCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 947 AARN--GTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 998 (1713)
Q Consensus 947 Al~~--~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~ 998 (1713)
|+.. .+-..+ .++. -.-+..+.++...++|++|+..+++..++.
T Consensus 542 AL~~~~~A~~ld----~kn~----l~~~~~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 542 ALQLYEKAIHLD----PKNP----LCKYHRASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHHHHHHhcC----CCCc----hhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence 4332 221111 1111 134677888899999999999998876653
No 27
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.27 E-value=5.8e-10 Score=147.31 Aligned_cols=234 Identities=18% Similarity=0.224 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 798 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dh 798 (1713)
..++.+|..+...|++++|+.+|++++.. ++....++..++.++...|++++|+.++.+++.. +
T Consensus 500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~ 563 (899)
T TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTI--------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL--------N 563 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 34555666777777777777777777654 2333456667777777777777777777777654 2
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000292 799 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 878 (1713)
Q Consensus 799 p~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~ 878 (1713)
+.....+..++.+|...|++++|+.++++++.. +|....++..+|.+|...|++++|+.+|+++++..
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---- 631 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---- 631 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 344556677788888888888888887777653 23334567888888888888888888888887653
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000292 879 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 958 (1713)
Q Consensus 879 G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a 958 (1713)
+ .....+..+|.+|...|++++|+.++++++.+ .+++.........+ +...+..+.+..+.....
T Consensus 632 -~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~----- 696 (899)
T TIGR02917 632 -P---DSALALLLLADAYAVMKNYAKAITSLKRALEL-----KPDNTEAQIGLAQL-LLAAKRTESAKKIAKSLQ----- 696 (899)
T ss_pred -C---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHH-----
Confidence 2 23356777888888889999998888888754 34443322222111 222223333322221110
Q ss_pred hhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 959 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 998 (1713)
Q Consensus 959 ~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~ 998 (1713)
.........+..+|.++...|++++|+.+|++++...
T Consensus 697 ---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 697 ---KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred ---hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 0011233467778888888899999999988887754
No 28
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.26 E-value=5.2e-10 Score=127.32 Aligned_cols=176 Identities=19% Similarity=0.243 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
.+..++.+|..++..|++++|+..|++++... +.++....+++.+|.+|+.+|++++|+..+++++... +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p 101 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-----P 101 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----c
Confidence 36788999999999999999999999998763 4556666789999999999999999999999999863 5
Q ss_pred CCchhHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHhcCCCChhHHHH--------------HHHHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRL--------QHTELALKYVKRALYLLHLTCGPSHPNTAAT--------------YINVAMME 854 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~l--------G~~eeALe~yerALeL~~~i~G~dhP~~a~a--------------~~NLA~iy 854 (1713)
+++....+++.+|.++... |++++|++.|++++... ++++....+ ...+|.+|
T Consensus 102 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 176 (235)
T TIGR03302 102 NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVARFY 176 (235)
T ss_pred CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677899999999887 88999999999998752 333322211 24689999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000292 855 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 912 (1713)
Q Consensus 855 ~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekA 912 (1713)
...|++.+|+..|+++++.+ ++++....+++.+|.+|..+|++++|..+++..
T Consensus 177 ~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 177 LKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999876 455777889999999999999999999987654
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.25 E-value=4.1e-10 Score=151.25 Aligned_cols=235 Identities=17% Similarity=0.037 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
....++.+|.++.. |+..+|+..|.+++... |. ......+|.++...|++++|+.+|++++..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd-~~~~L~lA~al~~~Gr~eeAi~~~rka~~~------- 538 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PD-AWQHRAVAYQAYQVEDYATALAAWQKISLH------- 538 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cc-hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-------
Confidence 46678888888876 89999999999998762 22 123666788888999999999999987542
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 876 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek 876 (1713)
.+. ...+.++|.++...|++++|+.+|++++.+ +|.....+..++..+...|++++|+.+|++|+++.
T Consensus 539 -~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-- 606 (987)
T PRK09782 539 -DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-- 606 (987)
T ss_pred -CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--
Confidence 111 234678999999999999999999999875 23334555567777778899999999999999875
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000292 877 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 956 (1713)
Q Consensus 877 ~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~ 956 (1713)
|. ...+.++|.++..+|++++|+..+++++.+ .|++.. +...++.+....+...+++.....
T Consensus 607 ------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~~---a~~nLG~aL~~~G~~eeAi~~l~~--- 668 (987)
T PRK09782 607 ------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNSN---YQAALGYALWDSGDIAQSREMLER--- 668 (987)
T ss_pred ------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHH---
Confidence 22 567899999999999999999999999965 466664 344444444333333333322111
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh
Q 000292 957 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1001 (1713)
Q Consensus 957 ~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl 1001 (1713)
.....+...+++..+|.+|..+|++++|+.+|++++++....
T Consensus 669 ---AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 669 ---AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred ---HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 111122445789999999999999999999999999887543
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=6.6e-10 Score=142.63 Aligned_cols=236 Identities=13% Similarity=0.049 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc---------CCHHHHHHH
Q 000292 715 SADGRQLLESSKTALDK---GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---------GDFNQATIY 782 (1713)
Q Consensus 715 s~~A~~LlelA~~~l~q---G~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~l---------Gd~deAle~ 782 (1713)
.-++..++..|..++.. +.+++|+.+|++|+++ +|..+.+|..||.+|..+ +++++|+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~ 326 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEH 326 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHH
Confidence 33566677777766544 3467899999999876 566677888888887644 348899999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 000292 783 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 862 (1713)
Q Consensus 783 ~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~ee 862 (1713)
+++|+.+ .|....++..+|.++...|++++|+.+|++|+++ .|....+++++|.+|...|++++
T Consensus 327 ~~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~e 390 (553)
T PRK12370 327 AIKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEE 390 (553)
T ss_pred HHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999886 4667788999999999999999999999999986 34556678999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH
Q 000292 863 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE--SK 940 (1713)
Q Consensus 863 Ale~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~--qk 940 (1713)
|+.+|++|+++. +.++ ..++.++.++...|++++|+..+++++... .++++. ....++.+. .+
T Consensus 391 Ai~~~~~Al~l~-----P~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~----~p~~~~---~~~~la~~l~~~G 455 (553)
T PRK12370 391 ALQTINECLKLD-----PTRA---AAGITKLWITYYHTGIDDAIRLGDELRSQH----LQDNPI---LLSMQVMFLSLKG 455 (553)
T ss_pred HHHHHHHHHhcC-----CCCh---hhHHHHHHHHHhccCHHHHHHHHHHHHHhc----cccCHH---HHHHHHHHHHhCC
Confidence 999999999885 3332 233445666778999999999998876431 244443 223333333 33
Q ss_pred HHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHh
Q 000292 941 AFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 999 (1713)
Q Consensus 941 a~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~d 999 (1713)
..+.+.+....... ....-......++..|..+|+ +|...+++.++...
T Consensus 456 ~~~eA~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 456 KHELARKLTKEIST--------QEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred CHHHHHHHHHHhhh--------ccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 33444333222111 111223456677777777774 77777777555444
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=5.8e-10 Score=122.83 Aligned_cols=204 Identities=20% Similarity=0.165 Sum_probs=149.8
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 756 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 835 (1713)
Q Consensus 756 hp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i 835 (1713)
....+..+..+|.+|+..|++++|+.++++++.. +|....++..+|.+|..+|++++|+++|++++.+
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---- 94 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL---- 94 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Confidence 3456788999999999999999999999999875 3556788999999999999999999999999985
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 836 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 836 ~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
. |.....+.++|.+|...|++++|+.+|++++... ..+.....+..+|.+|...|++++|..++.+++.+
T Consensus 95 -~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 95 -N---PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred -C---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 2334678899999999999999999999998742 22334566888999999999999999999999865
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000292 916 LRAKLGPDDLRTQDAAAWLEYFE--SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTY 993 (1713)
Q Consensus 916 ~kk~LG~dh~~t~ea~~~La~L~--qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeK 993 (1713)
.+++... ...++.+. .+.++.+.......... .......+..++.++...|+.++|..+.+.
T Consensus 165 -----~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 165 -----DPQRPES---LLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred -----CcCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2444332 22333222 22333332222111000 012234566778888888999999888776
Q ss_pred HHHH
Q 000292 994 VAKV 997 (1713)
Q Consensus 994 ALeL 997 (1713)
...+
T Consensus 229 ~~~~ 232 (234)
T TIGR02521 229 LQKL 232 (234)
T ss_pred HHhh
Confidence 6543
No 32
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=5.8e-10 Score=123.89 Aligned_cols=207 Identities=19% Similarity=0.153 Sum_probs=156.4
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 756 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 835 (1713)
Q Consensus 756 hp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i 835 (1713)
+...+.++..||.-|+..|++..|...+++||.+ +|....++.-+|.+|...|+.+.|.+.|++|+.+
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---- 98 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----
Confidence 4456788999999999999999999999999987 6788899999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 836 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 836 ~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
+|....+++|.|..++.+|++++|..+|++|+.. +.....+.++.|+|.|..++|+++.|..+|++++++
T Consensus 99 ----~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 99 ----APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred ----CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 5777889999999999999999999999999874 455566788999999999999999999999999976
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000292 916 LRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 995 (1713)
Q Consensus 916 ~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKAL 995 (1713)
. ++.+.....+..+.+ +..+...+........ .. ....++.+.....+....|+-+.|..|-.+..
T Consensus 169 d-----p~~~~~~l~~a~~~~---~~~~y~~Ar~~~~~~~-----~~-~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 169 D-----PQFPPALLELARLHY---KAGDYAPARLYLERYQ-----QR-GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred C-----cCCChHHHHHHHHHH---hcccchHHHHHHHHHH-----hc-ccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3 444433333333322 2222222221110000 00 00223445555566677899998887775554
Q ss_pred HHH
Q 000292 996 KVK 998 (1713)
Q Consensus 996 eL~ 998 (1713)
..+
T Consensus 235 r~f 237 (250)
T COG3063 235 RLF 237 (250)
T ss_pred HhC
Confidence 443
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=4.2e-10 Score=144.40 Aligned_cols=153 Identities=14% Similarity=0.068 Sum_probs=126.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 000292 730 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 809 (1713)
Q Consensus 730 ~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA 809 (1713)
..+++++|+.++++|+++ .|..+.++..+|.++..+|++++|+.+|++|+.+ .|....+++++|
T Consensus 316 ~~~~~~~A~~~~~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg 379 (553)
T PRK12370 316 KQNAMIKAKEHAIKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYG 379 (553)
T ss_pred cchHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 345689999999999987 4666778999999999999999999999999987 466778899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 000292 810 VFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 889 (1713)
Q Consensus 810 ~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~ 889 (1713)
.+|..+|++++|+.++++|+++ .+.++ ..+..++.++...|++++|+.++++++... .+.....+
T Consensus 380 ~~l~~~G~~~eAi~~~~~Al~l-----~P~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~ 444 (553)
T PRK12370 380 WNLFMAGQLEEALQTINECLKL-----DPTRA---AAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILL 444 (553)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc-----CCCCh---hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHH
Confidence 9999999999999999999986 34433 334456667778999999999999987653 12334567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 000292 890 HAIAIALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 890 ~nLA~ay~~lGd~eeAle~lekAL 913 (1713)
.++|.+|..+|++++|...+++..
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhh
Confidence 889999999999999999987654
No 34
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.22 E-value=3.1e-09 Score=143.66 Aligned_cols=272 Identities=13% Similarity=0.011 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 798 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dh 798 (1713)
......|..+...|++++|..++++++..... ......+.++..+|.++...|++++|..++++++...++. |. .
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~-~ 527 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DV-Y 527 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cc-h
Confidence 33444678888999999999999999975221 1222345677889999999999999999999999987763 32 2
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000292 799 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 878 (1713)
Q Consensus 799 p~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~ 878 (1713)
.....++.++|.++..+|++++|..++.+++.+.....+..++....++..+|.++...|++++|..++++++.+....
T Consensus 528 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~- 606 (903)
T PRK04841 528 HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY- 606 (903)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-
Confidence 3345688999999999999999999999999998876554555555667789999999999999999999999987543
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH------------------H---------
Q 000292 879 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA------------------A--------- 931 (1713)
Q Consensus 879 G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea------------------~--------- 931 (1713)
+ ......++..+|.++...|+++.|..++.++..++... + .+...... .
T Consensus 607 ~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 682 (903)
T PRK04841 607 Q--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG-R-YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP 682 (903)
T ss_pred C--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-c-ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC
Confidence 2 22345677789999999999999999999998875442 1 11100000 0
Q ss_pred ------------HHHHHHHH--HHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000292 932 ------------AWLEYFES--KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 997 (1713)
Q Consensus 932 ------------~~La~L~q--ka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL 997 (1713)
..++.... +.+..+...... ................++..+|.+|..+|++++|..++.+++++
T Consensus 683 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~--al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 683 EFANNHFLQGQWRNIARAQILLGQFDEAEIILEE--LNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH--HHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 00111111 111111111110 00111111222245567788899999999999999999999988
Q ss_pred Hhhhc
Q 000292 998 KGNFY 1002 (1713)
Q Consensus 998 ~dSl~ 1002 (1713)
....+
T Consensus 761 a~~~g 765 (903)
T PRK04841 761 ANRTG 765 (903)
T ss_pred hCccc
Confidence 87655
No 35
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=2.9e-09 Score=126.43 Aligned_cols=175 Identities=18% Similarity=0.110 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 795 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG 795 (1713)
..+..++.+|.++...|++++|+..|++++.+ .|..+.+|+.+|.+|..+|++++|+..|++++.+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------ 127 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------ 127 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 34677999999999999999999999999987 4566789999999999999999999999999986
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000292 796 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 875 (1713)
Q Consensus 796 ~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~e 875 (1713)
.|....++.++|.+++..|++++|++.|++++.+ .++++.. ..+ ..++...+++++|+..|.+++....
T Consensus 128 --~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~---~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 128 --DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW---LYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH---HHHHHccCCHHHHHHHHHHHHhhCC
Confidence 4666788999999999999999999999999985 3445421 111 1233456778888888866553210
Q ss_pred ----------HhcCCC-------------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 876 ----------RLLGPD-------------------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 876 ----------k~~G~d-------------------~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
-..|.. .+....+|++||.+|..+|++++|+.+|++|+++
T Consensus 197 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 197 KEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred ccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 011111 1123467999999999999999999999999955
No 36
>PF05303 DUF727: Protein of unknown function (DUF727); InterPro: IPR007967 This family consists of several uncharacterised eukaryotic proteins of unknown function.; PDB: 1SGO_A.
Probab=99.21 E-value=1.2e-11 Score=124.61 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=49.9
Q ss_pred CCCCceEEEEEEEeCCCEEEEEEeccceeecCC--------------CCcccchHHHHHhhhcHHHHHHHHHHHHHhh
Q 000292 39 SPDDHLLSLDVKLCNGKMVNVEACRKGFYSVGK--------------QRILCHNIVDLLGQLSRAFDNAYNELMNAFS 102 (1713)
Q Consensus 39 ~~~gdl~yL~v~t~eg~~~~Ita~~~GFyvn~~--------------~~~~~HsL~~LL~~iSp~F~~~f~~l~k~~~ 102 (1713)
|..|||+||+|+|+||++|+||+|.+||||++. ....+|||.+||++|||.|++.|...+..+.
T Consensus 27 p~~~~l~Ylnv~TlEg~~~cIelt~~Gf~V~s~~~D~~~~~~~~~~~~~~~~eTl~~LL~~iSP~fr~~F~~~L~~kL 104 (108)
T PF05303_consen 27 PRTGDLIYLNVTTLEGRTYCIELTTKGFRVVSSTFDCMDPDPSQSSLHTKYFETLYALLDSISPLFRKRFGEKLSQKL 104 (108)
T ss_dssp -EETTEEEEEEE-TT--EEEEEEETTEEEEEESSTT---TT---------EESSSHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEEecCCEEEEEEECCeEEEeeecCCCcCcccccccccchHHhhHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 447899999999999999999999999999732 2236899999999999999999997666543
No 37
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.3e-10 Score=139.01 Aligned_cols=209 Identities=19% Similarity=0.163 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
+-.++..|..|+..|++.+|..+|.+|..+ ++..+.+|..+|..|...|+.++|+..|..|-++..
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~------ 377 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP------ 377 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc------
Confidence 344566677888899999999999999876 566788999999999999999999999999977642
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
..-.-+.-||.-|.+.++++.|.++|.+|+.++ +.+ ..+++.+|.+....+.|.+|..+|+.++...+..
T Consensus 378 --G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-----P~D---plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 378 --GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-----PSD---PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred --CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-----CCc---chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 222345678999999999999999999999984 344 4567889999999999999999999999776554
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 957 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~ 957 (1713)
+...+...-++.+||.+|..++.+++|+.++++|+.+ .+.+
T Consensus 448 -~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-----~~k~--------------------------------- 488 (611)
T KOG1173|consen 448 -LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-----SPKD--------------------------------- 488 (611)
T ss_pred -cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-----CCCc---------------------------------
Confidence 3444567778999999999999999999999999844 2222
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHh
Q 000292 958 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 999 (1713)
Q Consensus 958 a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~d 999 (1713)
..++..+|-+|..+|+.+.|+.+|.+++.+..
T Consensus 489 ----------~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 489 ----------ASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred ----------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 23567788888889999999999999988754
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=7e-10 Score=130.10 Aligned_cols=214 Identities=16% Similarity=0.150 Sum_probs=151.8
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 000292 733 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 812 (1713)
Q Consensus 733 ~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy 812 (1713)
++.+|..|...|+.+ +...+.++.+-|.+.+..|++++|.++|++||. ++.....+++|+|+.+
T Consensus 471 ~~~~aqqyad~aln~--------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~ 534 (840)
T KOG2003|consen 471 DFADAQQYADIALNI--------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTA 534 (840)
T ss_pred chhHHHHHHHHHhcc--------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccH
Confidence 466777777777665 334466777788888888888888888888875 2345567888888888
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000292 813 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 892 (1713)
Q Consensus 813 ~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nL 892 (1713)
..+|++++|+++|.+.-.++.. .+.++..+|.+|..+.+..+|+++|-++..+. ++.| .++..|
T Consensus 535 e~~~~ldeald~f~klh~il~n--------n~evl~qianiye~led~aqaie~~~q~~sli-----p~dp---~ilskl 598 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAILLN--------NAEVLVQIANIYELLEDPAQAIELLMQANSLI-----PNDP---AILSKL 598 (840)
T ss_pred HHhcCHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-----CCCH---HHHHHH
Confidence 8888888888888887666533 36778888888888888888888888877665 3333 456778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCchhhhhcCCccHHHH
Q 000292 893 AIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE--SKAFEQQEAARNGTRKPDASIASKGHLSVSDL 970 (1713)
Q Consensus 893 A~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~--qka~e~AeAl~~~~~~~~~a~a~~~~~svael 970 (1713)
|.+|-+.|+-.+|.+++-..+..| +..++...||+.++ .+..+.+..+.... ..-.+.+...
T Consensus 599 ~dlydqegdksqafq~~ydsyryf--------p~nie~iewl~ayyidtqf~ekai~y~eka--------aliqp~~~kw 662 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYF--------PCNIETIEWLAAYYIDTQFSEKAINYFEKA--------ALIQPNQSKW 662 (840)
T ss_pred HHHhhcccchhhhhhhhhhccccc--------CcchHHHHHHHHHHHhhHHHHHHHHHHHHH--------HhcCccHHHH
Confidence 888888888888888877666443 34456677877333 33333333332221 1122345566
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Q 000292 971 LDYINPSHDTKGRNVSTLKRKTYV 994 (1713)
Q Consensus 971 L~~LA~~y~~qGdyeEAl~yyeKA 994 (1713)
..+++.++.+.|+|++|+..|+..
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHH
Confidence 778999999999999999998654
No 39
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.20 E-value=9.9e-10 Score=147.59 Aligned_cols=231 Identities=15% Similarity=-0.006 Sum_probs=171.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 000292 721 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 800 (1713)
Q Consensus 721 LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ 800 (1713)
.+.+|..+...|++++|+.+|++++.. + +. ...+..+|.++...|++++|+.++++++.+ +|.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~------~--p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~ 574 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH------D--MS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLG 574 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc------C--CC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCc
Confidence 555677778999999999999987543 1 11 234678899999999999999999999875 244
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 801 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 880 (1713)
Q Consensus 801 ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~ 880 (1713)
....+..++..+..+|++++|+.+|++|+.+ .|. ...+.++|.++..+|++++|+.+|++++++.
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~------ 639 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELE------ 639 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------
Confidence 4566667777777889999999999999976 244 6788999999999999999999999999875
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhh
Q 000292 881 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIA 960 (1713)
Q Consensus 881 d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a 960 (1713)
|....++.++|.++...|++++|+.++++|+++ .|+++.....+.++ +...+..+.+...........
T Consensus 640 --Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~~nLA~a-l~~lGd~~eA~~~l~~Al~l~---- 707 (987)
T PRK09782 640 --PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-----LPDDPALIRQLAYV-NQRLDDMAATQHYARLVIDDI---- 707 (987)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcC----
Confidence 344578899999999999999999999999965 46776544433333 222333333333322211111
Q ss_pred hcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHh
Q 000292 961 SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 999 (1713)
Q Consensus 961 ~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~d 999 (1713)
+..+.+...+|.+...+.+++.|.+.|.++..+..
T Consensus 708 ----P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 708 ----DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred ----CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 23445677788888888888888888877766543
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=6.8e-10 Score=132.14 Aligned_cols=255 Identities=16% Similarity=0.093 Sum_probs=154.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 000292 724 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 803 (1713)
Q Consensus 724 lA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ 803 (1713)
.|.+...+.++++|+..|++.+.- +|....-+..++.+++.+.+-.+-.-+.+.+..+ +.....
T Consensus 268 ~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--------dKyR~E 331 (559)
T KOG1155|consen 268 IAAASYNQRDFDQAESVFEEIRKN--------DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--------DKYRPE 331 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhc--------CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--------ccCCcc
Confidence 356677888999999999987653 2222222333344444444433222233333333 222334
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000292 804 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 883 (1713)
Q Consensus 804 ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~ 883 (1713)
++.-+|..|...++.++|+.||++|+.+ +|....++..+|.=|..+++...|+..|++|++++ |
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------p 395 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------P 395 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------c
Confidence 4566777777777777777777777775 35556666777777777777777777777777776 3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcC
Q 000292 884 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKG 963 (1713)
Q Consensus 884 ~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~ 963 (1713)
.--.+++.||++|..++-..=|+-+|++|++ +.|++.+...+ |+..+.+.....+|.....+......
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~-----~kPnDsRlw~a---LG~CY~kl~~~~eAiKCykrai~~~d---- 463 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE-----LKPNDSRLWVA---LGECYEKLNRLEEAIKCYKRAILLGD---- 463 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh-----cCCCchHHHHH---HHHHHHHhccHHHHHHHHHHHHhccc----
Confidence 3446677777777777777777777777764 34666655443 33333443333333332221111100
Q ss_pred CccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhhcccccc
Q 000292 964 HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESSDE 1024 (1713)
Q Consensus 964 ~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~q~n~ea~~eIa~LEikyet~kK 1024 (1713)
....+|..||.+|...+++.+|..+|+++++....-+....+..+.+.-|..-|...+.
T Consensus 464 --te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 464 --TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred --cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc
Confidence 12347899999999999999999999999998866553333333444455554444433
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=1.5e-09 Score=127.53 Aligned_cols=236 Identities=15% Similarity=0.155 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELG 795 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lG--d~deAle~~~KAL~I~Er~lG 795 (1713)
...-+..|..++.+|+++.|++.+. .+++ .++.....+..+|..+++.+| ++..|..|...|+.+
T Consensus 419 ~dlei~ka~~~lk~~d~~~aieilk----v~~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~------ 485 (840)
T KOG2003|consen 419 IDLEINKAGELLKNGDIEGAIEILK----VFEK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI------ 485 (840)
T ss_pred hhhhhhHHHHHHhccCHHHHHHHHH----HHHh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc------
Confidence 3444566788899999999988653 3322 345555667788999998865 688888999988876
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000292 796 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 875 (1713)
Q Consensus 796 ~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~e 875 (1713)
+...+.++.|-|.+-+..|++++|.+.|+.||. ++.....+++|+|..+..+|++++|+++|-+.-.+.
T Consensus 486 --dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il- 554 (840)
T KOG2003|consen 486 --DRYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL- 554 (840)
T ss_pred --cccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-
Confidence 234567888999999999999999999999986 456678899999999999999999999999888776
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 876 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 955 (1713)
Q Consensus 876 k~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~ 955 (1713)
...+.+++++|.+|..+.+..+|++++-++..+ -++++..+ ..|+.++.+.++..+++...-.
T Consensus 555 -------~nn~evl~qianiye~led~aqaie~~~q~~sl-----ip~dp~il---skl~dlydqegdksqafq~~yd-- 617 (840)
T KOG2003|consen 555 -------LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-----IPNDPAIL---SKLADLYDQEGDKSQAFQCHYD-- 617 (840)
T ss_pred -------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----CCCCHHHH---HHHHHHhhcccchhhhhhhhhh--
Confidence 346788999999999999999999999888744 47777654 4455566655555555433211
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 956 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 998 (1713)
Q Consensus 956 ~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~ 998 (1713)
.....+...+....|+..|....-.++|+.||+++.-+.
T Consensus 618 ----syryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 618 ----SYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred ----cccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 112223455677889999999999999999999986543
No 42
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.12 E-value=4.6e-09 Score=133.92 Aligned_cols=254 Identities=13% Similarity=0.087 Sum_probs=179.1
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000292 712 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 791 (1713)
Q Consensus 712 ~~~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~E 791 (1713)
......++.+|.+|+.|..+|+|++|..||.+++... +++ ....+..||.+|...|+++.|..+|.+.+...
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~- 372 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL- 372 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhC-
Confidence 3445668889999999999999999999999998762 222 35578899999999999999999999998763
Q ss_pred HhcCCCCchhHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000292 792 RELGLDHPDTMKSYGDLAVFYYRLQ----HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 867 (1713)
Q Consensus 792 r~lG~Dhp~ta~ay~nLA~vy~~lG----~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~l 867 (1713)
|+......-||.+|...+ ..++|..++.++++. .|....+|..+|.+|... +...++.+|
T Consensus 373 -------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~-d~~~sL~~~ 436 (1018)
T KOG2002|consen 373 -------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQT-DPWASLDAY 436 (1018)
T ss_pred -------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhc-ChHHHHHHH
Confidence 455666677888887775 557777777777764 256678999999998765 445559999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHH--HH
Q 000292 868 HKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL--RTQDAAAWLEYFESKA--FE 943 (1713)
Q Consensus 868 ekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~--~t~ea~~~La~L~qka--~e 943 (1713)
.+|+.+.....+. .-...+.++|..++.+|++.+|..++.+|+..+......+.. ........|+.+.... .+
T Consensus 437 ~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 437 GNALDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence 9999988765433 335778999999999999999999999999986644433321 1111233333332222 11
Q ss_pred HHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh
Q 000292 944 QQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1000 (1713)
Q Consensus 944 ~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dS 1000 (1713)
.+..++.. -...++...+.|..+|.....+++..+|..+++.++.+..+
T Consensus 514 ~A~e~Yk~--------Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 514 VAEEMYKS--------ILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred HHHHHHHH--------HHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 12111110 12234456667777776667777777888888777765443
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.11 E-value=7.7e-09 Score=117.76 Aligned_cols=181 Identities=16% Similarity=0.142 Sum_probs=140.7
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 756 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 835 (1713)
Q Consensus 756 hp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i 835 (1713)
....+..++.+|..++..|++++|+..+++++... ++++....+++.+|.+|..+|++++|+..|++++..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~---- 99 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL---- 99 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----
Confidence 44567899999999999999999999999998763 455666788999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH--------------HHHHH
Q 000292 836 CGPSHPNTAATYINVAMMEEGL--------GNVHVALRYLHKALKCNQRLLGPDHIQTAAS--------------YHAIA 893 (1713)
Q Consensus 836 ~G~dhP~~a~a~~NLA~iy~~l--------G~~eeAle~lekALei~ek~~G~d~~~tA~a--------------~~nLA 893 (1713)
.++++....+++.+|.++... |++++|+..|+++++.. +++.....+ ...+|
T Consensus 100 -~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a 173 (235)
T TIGR03302 100 -HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVA 173 (235)
T ss_pred -CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777889999999876 78999999999998765 333322222 23566
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHH
Q 000292 894 IALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDY 973 (1713)
Q Consensus 894 ~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~ 973 (1713)
.+|..+|++.+|+..++++++.+ ++ .....+++..
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~-----p~----------------------------------------~~~~~~a~~~ 208 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENY-----PD----------------------------------------TPATEEALAR 208 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHC-----CC----------------------------------------CcchHHHHHH
Confidence 77777777777777776665432 11 1234567889
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Q 000292 974 INPSHDTKGRNVSTLKRKTYVAK 996 (1713)
Q Consensus 974 LA~~y~~qGdyeEAl~yyeKALe 996 (1713)
+|.+|..+|++++|..+++....
T Consensus 209 l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 209 LVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999998866543
No 44
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.08 E-value=1.6e-08 Score=117.32 Aligned_cols=273 Identities=14% Similarity=0.060 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dh-p~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
...++++++.+...-++.+++.|..-.+.+- |-.. ..-......||.++.-++.|++++++|++|+.+...+ .
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~ 156 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--D 156 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--C
Confidence 4556667777777777778888777776652 1111 1123566679999999999999999999999997653 3
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-C-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-H-PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~d-h-P~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
|...-.++|..||.+|....++++|+-+..+|+++.....-.+ | -....+++.++..|..+|+.-.|.++.++|.++.
T Consensus 157 D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 157 DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4444568999999999999999999999999999987753122 2 2246678899999999999999999999999998
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHH
Q 000292 875 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ-----QEAAR 949 (1713)
Q Consensus 875 ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~-----AeAl~ 949 (1713)
... .+....+.++..+|.+|...|+.+.|...|++|+.+.... |.. ....+++...+........+ -+++.
T Consensus 237 l~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdr-mgqv~al~g~Akc~~~~r~~~k~~~Crale 312 (518)
T KOG1941|consen 237 LQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDR-MGQVEALDGAAKCLETLRLQNKICNCRALE 312 (518)
T ss_pred HHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhh-HHHHHHHHHHHHHHHHHHHhhcccccchhH
Confidence 554 4566778889999999999999999999999999988654 221 11122222222111100000 01111
Q ss_pred hcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh
Q 000292 950 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1000 (1713)
Q Consensus 950 ~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dS 1000 (1713)
...+..+.+........+..+...++.+|..+|.-++=-..+.++.+.-..
T Consensus 313 ~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e 363 (518)
T KOG1941|consen 313 FNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEE 363 (518)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 111112222233334467788999999999999988877777776665443
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.4e-08 Score=121.69 Aligned_cols=196 Identities=18% Similarity=0.157 Sum_probs=158.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 000292 721 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 800 (1713)
Q Consensus 721 LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ 800 (1713)
++.+|..|+++.+-++....|.+|..+ +|+...+|+..|.+++.+++|++|+.-|++|+.+ .|.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe 426 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPE 426 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------Chh
Confidence 778899999999999999999999887 5667789999999999999999999999999987 578
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 801 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 880 (1713)
Q Consensus 801 ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~ 880 (1713)
.+.+|..|+...++++++++++..|+.+..- -|....+|+..|.++..+++|++|++.|.+|+++.....+-
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK--------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 8999999999999999999999999999874 36777889999999999999999999999999987442111
Q ss_pred CcHHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000292 881 DHIQTAASYHAIAIA-LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARN 950 (1713)
Q Consensus 881 d~~~tA~a~~nLA~a-y~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~ 950 (1713)
+. .+..+..-|.+ +.-.+++..|+.++++|+++ +++.-.++..|+.+..+.....+++..
T Consensus 499 -~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAiel 559 (606)
T KOG0547|consen 499 -IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFELQRGKIDEAIEL 559 (606)
T ss_pred -cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11 11122222222 22458999999999999854 566667777888877777776666543
No 46
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=2.2e-09 Score=122.89 Aligned_cols=234 Identities=17% Similarity=0.121 Sum_probs=179.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 000292 723 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 802 (1713)
Q Consensus 723 elA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta 802 (1713)
++|+.|+..|-+.+|...++.+|+.+ .|+ ..+..|+.+|....+...|+..+.+.++. -|...
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~------~~~---dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~V 290 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQF------PHP---DTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDV 290 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcC------Cch---hHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchh
Confidence 45888999999999999999999863 233 46778999999999999999999888775 36667
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000292 803 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 882 (1713)
Q Consensus 803 ~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~ 882 (1713)
..+..+|.++..++++++|+++|+.++++ |+....+...+|.-|..-++.+-|+.||++.|.+- ..+
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-----~~s 357 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-----AQS 357 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-----CCC
Confidence 78889999999999999999999999875 45556666678888999999999999999998763 333
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCCchhhh
Q 000292 883 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES--KAFEQQEAARNGTRKPDASIA 960 (1713)
Q Consensus 883 ~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~q--ka~e~AeAl~~~~~~~~~a~a 960 (1713)
...+.|+|.++...++++-++..+++|+....+ .....+....|+++.- +....+........
T Consensus 358 ---peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL------- 422 (478)
T KOG1129|consen 358 ---PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL------- 422 (478)
T ss_pred ---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHHHHHHHHh-------
Confidence 456889999999999999999999999977532 2223344444444322 22222222222111
Q ss_pred hcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhc
Q 000292 961 SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1002 (1713)
Q Consensus 961 ~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~ 1002 (1713)
-+...-.+.|++||.+..+.|+.++|..+|..|..+..-.+
T Consensus 423 -~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 423 -TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred -ccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 12224567899999999999999999999999988877766
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.05 E-value=3.5e-08 Score=131.45 Aligned_cols=153 Identities=19% Similarity=0.159 Sum_probs=119.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000292 725 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 804 (1713)
Q Consensus 725 A~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~a 804 (1713)
..++...|++++|+..+.+++.+ .+..+.++..+|.++...|++++|+.++++++.+ .|....+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a 85 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDY 85 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 46677889999999888887653 3455677888999999999999999999998876 3455666
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000292 805 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 884 (1713)
Q Consensus 805 y~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~ 884 (1713)
+..+|.++...|++++|+.++++++.. +|.... +..+|.++...|++++|+..|++++++. ++
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-----P~--- 148 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-----PQ--- 148 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---
Confidence 788999999999999999999998875 344444 7788999999999999999999999875 33
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHH
Q 000292 885 TAASYHAIAIALSLMEAYPLSVQHEQ 910 (1713)
Q Consensus 885 tA~a~~nLA~ay~~lGd~eeAle~le 910 (1713)
...++..+|.++...|..++|+..++
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 34455567888887788777776555
No 48
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.04 E-value=4.2e-08 Score=130.73 Aligned_cols=246 Identities=14% Similarity=0.017 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
+..+..+|..+...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.++++++..
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-------- 112 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-------- 112 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 555777789999999999999999999987 3444567789999999999999999999999886
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH--------
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK-------- 869 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lek-------- 869 (1713)
+|.... +..+|.++...|++++|+.+|++++++ +|....++..+|.++...+..++|+..+++
T Consensus 113 ~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~ 183 (765)
T PRK10049 113 APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEK 183 (765)
T ss_pred CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHH
Confidence 455556 889999999999999999999999986 344455566788888888888877766653
Q ss_pred -------------------------------HHHHHHHhcC------CCcHHHHHHHHH-HHHHHHHcCChHHHHHHHHH
Q 000292 870 -------------------------------ALKCNQRLLG------PDHIQTAASYHA-IAIALSLMEAYPLSVQHEQT 911 (1713)
Q Consensus 870 -------------------------------ALei~ek~~G------~d~~~tA~a~~n-LA~ay~~lGd~eeAle~lek 911 (1713)
|++.++.+.. ...+....++.. ++ ++...|++++|+..|++
T Consensus 184 ~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 184 RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHH
Confidence 2222222221 011122222222 34 34567899999998887
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000292 912 TLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRK 991 (1713)
Q Consensus 912 ALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yy 991 (1713)
+++. ++..+..........++..+..+.+............ .......+.+..++.++..+|++++|+.++
T Consensus 263 ll~~-----~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p----~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 263 LKAE-----GQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE----TIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred hhcc-----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC----CCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 6643 2222332222223345555555555544332211110 000011244566777788999999999999
Q ss_pred HHHHHHH
Q 000292 992 TYVAKVK 998 (1713)
Q Consensus 992 eKALeL~ 998 (1713)
+++....
T Consensus 334 ~~~~~~~ 340 (765)
T PRK10049 334 AHTINNS 340 (765)
T ss_pred HHHhhcC
Confidence 9888764
No 49
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.02 E-value=9.9e-09 Score=118.99 Aligned_cols=270 Identities=13% Similarity=0.106 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 798 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dh 798 (1713)
...++.|.-++.+.++++|+..+.+.|....... .....|..+..++..+|.|.+++.+.---+..+... .|.
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~-----~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds 79 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLM-----GRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDS 79 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHH-----HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3455667778889999999999999998876543 345677888999999999999998877777666553 345
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 799 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH-PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 799 p~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dh-P~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
.....+|.||+..+...-++.+++.|-+..+.+- |... ..-......+|.++..++.+++++++|++|+++....
T Consensus 80 ~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~ 155 (518)
T KOG1941|consen 80 DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN 155 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 5667899999999999999999999888777642 1111 1123455669999999999999999999999998553
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCC
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQD---AAAWLEYFESKAFEQQEAARNGTRK 954 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~e---a~~~La~L~qka~e~AeAl~~~~~~ 954 (1713)
.|...-..++..||.+|..+.|+++|+-+..+|+++.... +-++..... ++..++-.....+....+.......
T Consensus 156 --~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~-~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea 232 (518)
T KOG1941|consen 156 --DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY-GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEA 232 (518)
T ss_pred --CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc-CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3334445778899999999999999999999999998764 322222221 2222222222222222222222222
Q ss_pred CchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhc
Q 000292 955 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1002 (1713)
Q Consensus 955 ~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~ 1002 (1713)
...+....+....+..+.-+|++|..+|+.+.|...|++|..+..+++
T Consensus 233 ~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g 280 (518)
T KOG1941|consen 233 MKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG 280 (518)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh
Confidence 334445566666777888999999999999999999999999999887
No 50
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.02 E-value=1.8e-08 Score=118.92 Aligned_cols=188 Identities=16% Similarity=0.068 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
+..+...|..|...|++++|...|.+|...+.+. .+....+.+|...+.+|... ++++|+.+|++|+.++... .+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~ 109 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GR 109 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--Cc
Confidence 4455555788888999999999999999998874 34456788888888887766 9999999999999999763 34
Q ss_pred CchhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000292 798 HPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 876 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~l-G~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek 876 (1713)
....+.++.++|.+|... |++++|+++|++|+++++.. ........++.++|.++..+|+|++|+..|++.......
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 455679999999999999 99999999999999999874 233456788899999999999999999999998875422
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 877 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 877 ~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekAL 913 (1713)
.. ......-..+...+.++...||+..|...+++..
T Consensus 188 ~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 188 NN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred cc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 1122334456677889999999998888777654
No 51
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=1.7e-08 Score=121.60 Aligned_cols=170 Identities=18% Similarity=0.134 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 798 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dh 798 (1713)
...+..|..+...|++++|+.++++++.. +|....++.. +..++.+|++..+...+.+++.. ....+
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 110 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDD--------YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPEN 110 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCC
Confidence 34455678888999999999999999876 2333344443 66666666666666655555543 24567
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000292 799 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 878 (1713)
Q Consensus 799 p~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~ 878 (1713)
+.....+..+|.++..+|++++|+..+++++++. |....++..+|.+|...|++++|+.++++++.....
T Consensus 111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-- 180 (355)
T cd05804 111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-- 180 (355)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--
Confidence 7778888889999999999999999999998862 333556778899999999999999999998876521
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 879 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 879 G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekAL 913 (1713)
+.......+..+|.+|..+|++++|+..+++++
T Consensus 181 --~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 181 --SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred --CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 112234456778999999999999999888875
No 52
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.01 E-value=1.2e-08 Score=120.33 Aligned_cols=173 Identities=18% Similarity=0.158 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHh------cCC---CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 000292 736 DAVTYGTKALAKLVAV------CGP---YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 806 (1713)
Q Consensus 736 eAle~lqeAL~l~eqv------~G~---dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~ 806 (1713)
+|.+++.+|-..+... +|. +....+..|...|.+|...|++++|...|.+|..+.++. .+....+..|.
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~ 79 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYE 79 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 4555666665554432 232 334567788889999999999999999999999998873 34456778899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000292 807 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQT 885 (1713)
Q Consensus 807 nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~l-G~~eeAle~lekALei~ek~~G~d~~~t 885 (1713)
+.+.+|... ++++|+.+|++|+.++... ......+.++.++|.+|... |++++|+++|++|+++++.. ......
T Consensus 80 ~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a 154 (282)
T PF14938_consen 80 EAANCYKKG-DPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSA 154 (282)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHH
T ss_pred HHHHHHHhh-CHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhH
Confidence 989888777 9999999999999999874 23455688999999999999 99999999999999999764 244556
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 886 AASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 886 A~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
..++..+|.++..+|+|++|++.|++....
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 788899999999999999999999987654
No 53
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.97 E-value=1.2e-07 Score=128.41 Aligned_cols=192 Identities=14% Similarity=-0.019 Sum_probs=149.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 000292 722 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 800 (1713)
Q Consensus 722 lelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dh-p~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ 800 (1713)
...+..++..|++++|..++.++...........+ ...+.+...+|.++...|++++|..++++++..... .+...
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~ 489 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYS 489 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHH
Confidence 34566777899999999999998776433210111 224556667899999999999999999999875211 12222
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 801 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 880 (1713)
Q Consensus 801 ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~ 880 (1713)
...++..+|.++...|++++|+.++.+++.+.... |..+ ....++.++|.++...|++++|..++++++.+.....+.
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~~~-~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 567 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DVYH-YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE 567 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cchH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 45677889999999999999999999999988763 3333 345678899999999999999999999999998776444
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 881 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 881 d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
..+....++..+|.++...|++++|..++++++.+...
T Consensus 568 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 568 QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 44445556778899999999999999999999988764
No 54
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.96 E-value=2.4e-09 Score=101.28 Aligned_cols=78 Identities=37% Similarity=0.533 Sum_probs=71.8
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 876 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek 876 (1713)
||.++.+|.+||.+|..+|+|++|+.+|++|+.+ ...+|++|+.++.+++++|.+|..+|++++|+.++++|+++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 6889999999999999999999999999999999 66678889999999999999999999999999999999998753
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1e-08 Score=124.92 Aligned_cols=173 Identities=20% Similarity=0.225 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
+..++..|..+...|.-++|+..|..|-+++... | .-+..||.-|..++.+.-|..+|.+|+.|+
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~----h----lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~------- 410 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC----H----LPSLYLGMEYMRTNNLKLAEKFFKQALAIA------- 410 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC----c----chHHHHHHHHHHhccHHHHHHHHHHHHhcC-------
Confidence 5556666888999999999999999998885422 2 123448999999999999999999999984
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
|.....+..+|.+.+..+.|.+|+.+|+.++...+... +..+....+++|||.+|.+++++++|+.+|++||.+.
T Consensus 411 -P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--- 485 (611)
T KOG1173|consen 411 -PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--- 485 (611)
T ss_pred -CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC---
Confidence 55567789999999999999999999999997766653 3344566789999999999999999999999999886
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
+..+.++..+|.+|..+|+++.|+++|.+||.+
T Consensus 486 -----~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 486 -----PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred -----CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 445678888999999999999999999999955
No 56
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.96 E-value=9e-08 Score=122.51 Aligned_cols=252 Identities=15% Similarity=0.097 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000292 720 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 799 (1713)
Q Consensus 720 ~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp 799 (1713)
.+..+|..++..|+|..+..++..|+.... .....+..++.+|+.|..+|+|++|..||.+|+... .+
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d-- 339 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----ND-- 339 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CC--
Confidence 345567888899999999999999887642 235678899999999999999999999999998752 22
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHH
Q 000292 800 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG----NVHVALRYLHKALKCNQ 875 (1713)
Q Consensus 800 ~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG----~~eeAle~lekALei~e 875 (1713)
.....+..||.+|...|+++.|..+|++.+... |+...+..-||.+|...+ ..+.|..++.++++..
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhC--------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 256788999999999999999999999998753 445566677899998876 4566777777666554
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 876 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 955 (1713)
Q Consensus 876 k~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~ 955 (1713)
+....+|..||++|....-+ .++.+|..|+.++......--+..+.....+.+. .+....+..........
T Consensus 411 -------~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~-~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 411 -------PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFR-LGNIEKALEHFKSALGK 481 (1018)
T ss_pred -------cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH-hcChHHHHHHHHHHhhh
Confidence 45567889999998765554 4599999999999887766544444444433322 22233322221111111
Q ss_pred chhhhhcCC--ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh
Q 000292 956 DASIASKGH--LSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1001 (1713)
Q Consensus 956 ~~a~a~~~~--~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl 1001 (1713)
.......+. .....+.+++|.++...+++..|-..|...++.....
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 000001110 1224568899999999999999999999888765543
No 57
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.5e-08 Score=124.15 Aligned_cols=209 Identities=14% Similarity=0.124 Sum_probs=161.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000292 722 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 801 (1713)
Q Consensus 722 lelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~t 801 (1713)
|..|..+++.|++.+|.-.|+.|+.. +|..+.+|..||.++...++-..|+..+++|+++ +|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 55678889999999999999998865 6888999999999999999999999999999987 5788
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-----Hh------cCC----C------------------Ch--hHHHH
Q 000292 802 MKSYGDLAVFYYRLQHTELALKYVKRALYLLH-----LT------CGP----S------------------HP--NTAAT 846 (1713)
Q Consensus 802 a~ay~nLA~vy~~lG~~eeALe~yerALeL~~-----~i------~G~----d------------------hP--~~a~a 846 (1713)
..++..||..|...|.-.+|++++.+-|..-- .. .+. . ++ ....+
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 89999999999999999999999888754310 00 000 0 11 11345
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 000292 847 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 926 (1713)
Q Consensus 847 ~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~ 926 (1713)
+..||.+|...|+|+.|+.+|+.||... |.....|..||..+..-.+..+|+..|++|+++. |.
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~--------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-----P~--- 496 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVK--------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-----PG--- 496 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcC--------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-----CC---
Confidence 5667777777777777777777777543 4556677777777777777777777777777542 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhc
Q 000292 927 TQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1002 (1713)
Q Consensus 927 t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~ 1002 (1713)
.....++||-.|..+|.|++|..+|-.|+.+.....
T Consensus 497 ----------------------------------------yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 497 ----------------------------------------YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred ----------------------------------------eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 112357888888999999999999999999988765
No 58
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.95 E-value=3.4e-09 Score=100.24 Aligned_cols=78 Identities=32% Similarity=0.454 Sum_probs=72.6
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 840 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 840 hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
||+++.++.++|.+|..+|++++|+.+|++|+++ .+.+|.+++.++.+++++|.+|..+|++++|++++++|++|+++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 7899999999999999999999999999999999 67778889999999999999999999999999999999999864
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.94 E-value=1.5e-09 Score=127.27 Aligned_cols=233 Identities=21% Similarity=0.240 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000292 722 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 801 (1713)
Q Consensus 722 lelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~t 801 (1713)
+..|..++..|++++|++.+.+.+... ..+.....+..+|.+...+++++.|+..|++.+..- +..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~ 77 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc--------ccc
Confidence 355888899999999999997765542 123344677889999999999999999999998752 224
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 802 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 881 (1713)
Q Consensus 802 a~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d 881 (1713)
...+.+|+.+ ...+++++|+++++++.+.. .++ ..+..+..++...++++++...++++.... .
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------~ 141 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERD------GDP---RYLLSALQLYYRLGDYDEAEELLEKLEELP------A 141 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------
T ss_pred cccccccccc-cccccccccccccccccccc------ccc---chhhHHHHHHHHHhHHHHHHHHHHHHHhcc------C
Confidence 4556677777 68999999999998876532 122 234446677889999999999999877432 2
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCchhhh
Q 000292 882 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQ-EAARNGTRKPDASIA 960 (1713)
Q Consensus 882 ~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~A-eAl~~~~~~~~~a~a 960 (1713)
.......+..+|.++...|+.++|+..+++|+.. .|+++.....+.|+.. ..+..+.+ .++..... .
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~------~ 209 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDARNALAWLLI-DMGDYDEAREALKRLLK------A 209 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHH------H
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHH------H
Confidence 2345677888999999999999999999999965 4777777766666532 22222221 12211110 0
Q ss_pred hcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHh
Q 000292 961 SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 999 (1713)
Q Consensus 961 ~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~d 999 (1713)
..... .++..+|.+|...|++++|+.+|+++++...
T Consensus 210 ~~~~~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 210 APDDP---DLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp -HTSC---CHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred CcCHH---HHHHHHHHHhccccccccccccccccccccc
Confidence 01111 2567889999999999999999999887554
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=7.8e-09 Score=118.55 Aligned_cols=190 Identities=17% Similarity=0.187 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
.+.++.++++|....+...|+..|.+.|+. .|.....+..+|+++..++++++|+++|+.+++.
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-------- 319 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-------- 319 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------
Confidence 445666678888888888888888888765 3555667778889999999999999999888875
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
|+....+..-+|.-|+.-++.+.|+.||++.|.+ |-..| ..+.|||.++..-++++-++..|++|+....
T Consensus 320 ~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~sp---eLf~NigLCC~yaqQ~D~~L~sf~RAlstat-- 389 (478)
T KOG1129|consen 320 HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQSP---ELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-- 389 (478)
T ss_pred CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCCh---HHHhhHHHHHHhhcchhhhHHHHHHHHhhcc--
Confidence 5556666777888888889999999999998875 44444 4578899999888999999999999988762
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ 944 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~ 944 (1713)
+....+.+|+|||.+....||+..|..+|+-|+. .++...+++..|+.+..+.+..
T Consensus 390 ---~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 390 ---QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred ---CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCch
Confidence 2345678899999999999999999888887762 2333456666666665544433
No 61
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.88 E-value=3.1e-07 Score=106.34 Aligned_cols=259 Identities=18% Similarity=0.091 Sum_probs=163.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000292 713 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 792 (1713)
Q Consensus 713 ~~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er 792 (1713)
....++...+++|..++..|++.+|+..|..|++. +|..-.+++..|.+|..+|+-..|+.-+.+.|.+
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---
Confidence 34456777788888888888898898888888765 4555666677777777777777777666666654
Q ss_pred hcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--------------------------HhcC-CC------
Q 000292 793 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH--------------------------LTCG-PS------ 839 (1713)
Q Consensus 793 ~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~--------------------------~i~G-~d------ 839 (1713)
.|+.+.+...-|.++..+|++++|..-|.+.|.--- ..++ .+
T Consensus 102 -----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 102 -----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred -----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 355666666666777777777766666665543200 0000 00
Q ss_pred --------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000292 840 --------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 911 (1713)
Q Consensus 840 --------hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lek 911 (1713)
.|+.+..+...|.+|...|+...|+.-++.+-++. . +....++.++.+++..|+.+.++.-.++
T Consensus 177 ~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-----~---DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 177 MITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-----Q---DNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred HHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-----c---cchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 23334455556666666677666666666665543 1 2335678889999999999999998888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH---------Hhc--C--CCCc----------------------
Q 000292 912 TLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAA---------RNG--T--RKPD---------------------- 956 (1713)
Q Consensus 912 ALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl---------~~~--~--~~~~---------------------- 956 (1713)
+|. +.++|....-.+..|..+........+++ ..+ . ..+.
T Consensus 249 CLK-----ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 249 CLK-----LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHc-----cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 884 57888766555555544332221111111 000 0 0000
Q ss_pred -hh-----hhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh
Q 000292 957 -AS-----IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1000 (1713)
Q Consensus 957 -~a-----~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dS 1000 (1713)
.+ .......+-.++|..-+.+|.....|+.|+.-|++|+++..+
T Consensus 324 ~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 324 GEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 00 012223345678888999999999999999999999887654
No 62
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=7.9e-08 Score=113.81 Aligned_cols=172 Identities=19% Similarity=0.181 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000292 720 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 799 (1713)
Q Consensus 720 ~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp 799 (1713)
.-+..+..+...|++++|+..-...+.+ ++..+.+++.-|.+++..++.+.|+.+|+++|.+ +++|.
T Consensus 171 a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpdh~ 237 (486)
T KOG0550|consen 171 AKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPDHQ 237 (486)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-----Chhhh
Confidence 3344577788899999999877777665 4566788899999999999999999999999986 66766
Q ss_pred hhHHHHH---------HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000292 800 DTMKSYG---------DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP-NTAATYINVAMMEEGLGNVHVALRYLHK 869 (1713)
Q Consensus 800 ~ta~ay~---------nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP-~~a~a~~NLA~iy~~lG~~eeAle~lek 869 (1713)
....++. .-|.-.+..|+|.+|.++|..||.+ .++|. ..+.+|.|.|.++..+|+..+|+.-.+.
T Consensus 238 ~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-----dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 238 KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI-----DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC-----CccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 6555444 4577889999999999999999986 34333 3578899999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000292 870 ALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 917 (1713)
Q Consensus 870 ALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~k 917 (1713)
|+.+- +....+|...|++|..+++|++|++.+++|++.-.
T Consensus 313 Al~iD--------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 313 ALKID--------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred hhhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99886 44667888999999999999999999999997754
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=2.4e-07 Score=107.08 Aligned_cols=240 Identities=13% Similarity=0.064 Sum_probs=182.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 000292 724 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 803 (1713)
Q Consensus 724 lA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ 803 (1713)
.|..++-..+-++|+++|.+.++. ++.+..+...||.+|...|+.+.|+...+-.+.-. +........
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~qr~l 108 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQRLL 108 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHHHHH
Confidence 466667778899999999998874 67788899999999999999999999887655420 111123457
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000292 804 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 883 (1713)
Q Consensus 804 ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~ 883 (1713)
++..||.=|...|-++.|...|....+.- . ....++-.|-.+|+...+|++|++..++..++..+ ....
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de~------e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~ 177 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDEG------E--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRV 177 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcch------h--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchh
Confidence 88899999999999999999998776521 1 12356778899999999999999988877766432 3456
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcC
Q 000292 884 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKG 963 (1713)
Q Consensus 884 ~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~ 963 (1713)
..|..|..||+.+....+++.|...+++|++. ++....+...++.+....++.+.+..... .+...+
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e-----~v~eQn 244 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALE-----RVLEQN 244 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHH-----HHHHhC
Confidence 78899999999999999999999999999854 33444455556666655555555544321 122344
Q ss_pred CccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHh
Q 000292 964 HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 999 (1713)
Q Consensus 964 ~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~d 999 (1713)
+.-+.+++..|..+|..+|+.++.+.++.++.+...
T Consensus 245 ~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 245 PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 557888999999999999999999999998877543
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=2.7e-08 Score=121.98 Aligned_cols=183 Identities=17% Similarity=0.125 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--
Q 000292 714 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE-- 791 (1713)
Q Consensus 714 ~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~E-- 791 (1713)
....++.+..+|.+....++-..|+..+++||++ .|....++..||..|...|.-.+|+.++.+-|...-
T Consensus 315 dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y 386 (579)
T KOG1125|consen 315 DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKY 386 (579)
T ss_pred ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccc
Confidence 4456788888899999999999999999999987 577788999999999999999999999888755420
Q ss_pred ---H------hcC----------------------CCCc--hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 000292 792 ---R------ELG----------------------LDHP--DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 838 (1713)
Q Consensus 792 ---r------~lG----------------------~Dhp--~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~ 838 (1713)
+ ..+ ..++ ....++..||.+|+..|+|++|+.+|+.||..
T Consensus 387 ~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v------- 459 (579)
T KOG1125|consen 387 VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV------- 459 (579)
T ss_pred hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-------
Confidence 0 000 0111 23456778999999999999999999999974
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 839 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 839 dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
.|.-..+++.||..+..-.+.++|+..|++||++. |...++.+|||..|..+|.|++|+.||-.||.+.++
T Consensus 460 -~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 460 -KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred -CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 57778899999999999999999999999999986 667789999999999999999999999999999877
Q ss_pred hc
Q 000292 919 KL 920 (1713)
Q Consensus 919 ~L 920 (1713)
..
T Consensus 531 s~ 532 (579)
T KOG1125|consen 531 SR 532 (579)
T ss_pred cc
Confidence 43
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=2.5e-07 Score=111.50 Aligned_cols=209 Identities=17% Similarity=0.078 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
+..++.+|..+...|+.+.|...+.++...... ...........|.+++..|++++|+.++++++..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------- 72 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDD-------- 72 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 445666788888899999998888887776432 2233455667899999999999999999999875
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
+|....++.. +..+...|++..+...+.+++.. ..+.+|.....+..+|.++..+|++++|+..+++++++.
T Consensus 73 ~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--- 144 (355)
T cd05804 73 YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--- 144 (355)
T ss_pred CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Confidence 3444445554 66777777776666666666654 345678888888899999999999999999999999875
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 957 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~ 957 (1713)
++ ....++.+|.+|...|++++|+.++++++..... ++.
T Consensus 145 --p~---~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~------------------------------- 183 (355)
T cd05804 145 --PD---DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSM------------------------------- 183 (355)
T ss_pred --CC---CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----Ccc-------------------------------
Confidence 22 2566888999999999999999999988754311 000
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000292 958 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 996 (1713)
Q Consensus 958 a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALe 996 (1713)
.....+..++.++..+|++++|+.+|++++.
T Consensus 184 --------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 184 --------LRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred --------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 1112456677778888888888888888743
No 66
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.83 E-value=3.8e-08 Score=104.90 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCC
Q 000292 738 VTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 817 (1713)
Q Consensus 738 le~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~ 817 (1713)
..+|++++.+ .|.. +..+|.++..+|++++|+.+|++++.+ .|....++.++|.++...|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 4677788776 3442 556899999999999999999999875 57778999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 818 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 818 ~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
+++|+.+|.+|+.+ .|....+++++|.++..+|++++|+..|++|+++.
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999985 35556789999999999999999999999999876
No 67
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.82 E-value=4.4e-08 Score=106.53 Aligned_cols=131 Identities=15% Similarity=0.061 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000292 800 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 879 (1713)
Q Consensus 800 ~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G 879 (1713)
..+.+++++|.++..+|++++|+.+|++|+.+. +++.....++.++|.+|...|++++|+.+|++|+.+.... +
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-~ 106 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-P 106 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-H
Confidence 456788999999999999999999999999873 3455567799999999999999999999999999875222 2
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000292 880 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 936 (1713)
Q Consensus 880 ~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~ 936 (1713)
..+...+.++.++|..+..+|+++.|+..+.+|+.++++.++.++..+.....|+..
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~ 163 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKI 163 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 233445566666666666999999999999999999999999988777777766654
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.79 E-value=1.3e-07 Score=123.24 Aligned_cols=170 Identities=15% Similarity=0.041 Sum_probs=142.0
Q ss_pred HHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 718 GRQLLESS-KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 718 A~~LlelA-~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
++.++.++ .+.-..|....+.+.+-+++.+.+. .+..+.++.+||.+...+|.+++|+.+++.++.+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~------- 115 (694)
T PRK15179 48 GRELLQQARQVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR------- 115 (694)
T ss_pred HHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-------
Confidence 44444444 3334456666677777777776543 3556889999999999999999999999999987
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 876 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek 876 (1713)
.|+...+..++|.++.+++++++|+..+++++.. .|+.+..++.+|.++.++|++++|+.+|++++..
T Consensus 116 -~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--- 183 (694)
T PRK15179 116 -FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--- 183 (694)
T ss_pred -CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc---
Confidence 4778899999999999999999999999999985 4666788999999999999999999999999972
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 877 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 877 ~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~ 916 (1713)
++....++..+|.++...|+.++|...|++|++.+
T Consensus 184 -----~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 184 -----HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 24556788889999999999999999999999765
No 69
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.76 E-value=1.2e-07 Score=103.10 Aligned_cols=122 Identities=14% Similarity=0.060 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000292 758 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 837 (1713)
Q Consensus 758 ~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G 837 (1713)
..+.+++.+|.++..+|++++|+.+|++|+.+. .++.....++.+||.+|...|++++|+.+|++|+.+.... +
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-~ 106 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-P 106 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-H
Confidence 457889999999999999999999999999873 3455567799999999999999999999999999863211 1
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000292 838 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 885 (1713)
Q Consensus 838 ~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~t 885 (1713)
..+..++.++.++|..+..+|+++.|+.++++|+.++++.++.++..+
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 112333444455555555999999999999999999999888776544
No 70
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.76 E-value=7e-08 Score=113.20 Aligned_cols=234 Identities=23% Similarity=0.258 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 798 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dh 798 (1713)
..+...|..+...++++.|+..|++.+..- +.....+..++.+ ...+++++|+.+++++.... .+
T Consensus 45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~ 109 (280)
T PF13429_consen 45 EYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KANPQDYERLIQL-LQDGDPEEALKLAEKAYERD------GD 109 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc--------ccccccccccccc-cccccccccccccccccccc------cc
Confidence 444456778888899999999999888652 2234456667776 68899999999888776531 12
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000292 799 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 878 (1713)
Q Consensus 799 p~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~ 878 (1713)
+ ..+..+..++...++++++..++.++... ...+.....+..+|.++...|+.++|+.+|++|++..
T Consensus 110 ~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---- 176 (280)
T PF13429_consen 110 P---RYLLSALQLYYRLGDYDEAEELLEKLEEL------PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD---- 176 (280)
T ss_dssp -----------H-HHHTT-HHHHHHHHHHHHH-------T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----
T ss_pred c---chhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Confidence 2 33445667788999999999999887742 1234456778889999999999999999999999886
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000292 879 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 958 (1713)
Q Consensus 879 G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a 958 (1713)
++ ...+...++.++...|+++++.+.++...... +.++.....+.+ .++..+..+.+.......
T Consensus 177 -P~---~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~la~-~~~~lg~~~~Al~~~~~~------ 240 (280)
T PF13429_consen 177 -PD---DPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPDLWDALAA-AYLQLGRYEEALEYLEKA------ 240 (280)
T ss_dssp -TT----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCCHCHHHHH-HHHHHT-HHHHHHHHHHH------
T ss_pred -CC---CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHHHHHHHH-Hhcccccccccccccccc------
Confidence 33 34456667888889999988777666544332 223322222222 222333333333332211
Q ss_pred hhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 959 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 998 (1713)
Q Consensus 959 ~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~ 998 (1713)
....+.-..++..+|.++...|++++|..+++++++..
T Consensus 241 --~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 241 --LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp --HHHSTT-HHHHHHHHHHHT-------------------
T ss_pred --cccccccccccccccccccccccccccccccccccccc
Confidence 01112334567899999999999999999999987654
No 71
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.75 E-value=1.5e-06 Score=108.01 Aligned_cols=251 Identities=12% Similarity=-0.010 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
...++-.|..+..+|+++.|..++.++.+.. +++. ..+....+.++...|++++|+..+++.+..
T Consensus 118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-------- 182 (409)
T TIGR00540 118 VLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEM-------- 182 (409)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 3445566889999999999999999987542 2221 123344599999999999999999888775
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---------------HHHhc---------------CCCCh----hH
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL---------------LHLTC---------------GPSHP----NT 843 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL---------------~~~i~---------------G~dhP----~~ 843 (1713)
+|....++..++.+|...|++++|++++.+.++. +.... ....| ..
T Consensus 183 ~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~ 262 (409)
T TIGR00540 183 APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHN 262 (409)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCC
Confidence 3555678889999999999999999888776632 00000 01122 24
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000292 844 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 923 (1713)
Q Consensus 844 a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~d 923 (1713)
...+..+|..+...|++++|+..++++++.. ++........ .....+...++.+.+++.++++++. .++
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~~-l~~~~~l~~~~~~~~~~~~e~~lk~-----~p~ 331 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLPL-CLPIPRLKPEDNEKLEKLIEKQAKN-----VDD 331 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhHH-HHHhhhcCCCChHHHHHHHHHHHHh-----CCC
Confidence 5667778889999999999999999998864 2322211011 1122333457777788777777643 467
Q ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh
Q 000292 924 DL--RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1001 (1713)
Q Consensus 924 h~--~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl 1001 (1713)
++ ....++.|+.+- .+.+..++.+.+...... ..++. +.+..+|.++..+|+.++|..+|++++.+.-.+
T Consensus 332 ~~~~~ll~sLg~l~~~-~~~~~~A~~~le~a~a~~------~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 332 KPKCCINRALGQLLMK-HGEFIEAADAFKNVAACK------EQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred ChhHHHHHHHHHHHHH-cccHHHHHHHHHHhHHhh------cCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 77 667777777633 334444443332101000 01122 235588999999999999999999999888776
Q ss_pred c
Q 000292 1002 Y 1002 (1713)
Q Consensus 1002 ~ 1002 (1713)
.
T Consensus 404 ~ 404 (409)
T TIGR00540 404 Q 404 (409)
T ss_pred c
Confidence 6
No 72
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.73 E-value=2.3e-07 Score=121.13 Aligned_cols=135 Identities=10% Similarity=0.020 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 795 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG 795 (1713)
.+...++.+|.+....|.+++|+.+++.++++ .|+...+..++|.++.+++++++|+..+++++..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~------ 149 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG------ 149 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc------
Confidence 34677888899999999999999999999988 4677889999999999999999999999999986
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 796 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 796 ~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
.|+...+++.+|.++..+|+|++|+.+|++++. .+|+...++.++|.++...|+.++|...|++|++..
T Consensus 150 --~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 150 --GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred --CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 577889999999999999999999999999987 256667889999999999999999999999999876
No 73
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.72 E-value=2.3e-06 Score=106.28 Aligned_cols=243 Identities=14% Similarity=0.014 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
.+...+..|...+..|+++.|.+.+.++.+. .+.-...+...|.++..+|+++.|..++.++.+..
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~------ 148 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA------ 148 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------
Confidence 4667788899999999999999999887665 22334456678999999999999999999987542
Q ss_pred CCchh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-
Q 000292 797 DHPDT-MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN- 874 (1713)
Q Consensus 797 Dhp~t-a~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~- 874 (1713)
|.. ..+....+.++...|+++.|+..+++.++. .++|+ .++..++.+|...|++++|++.+.+.++..
T Consensus 149 --p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~---~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 149 --GNDNILVEIARTRILLAQNELHAARHGVDKLLEM-----APRHK---EVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred --CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 222 223444599999999999999999998875 35555 567779999999999999999888777420
Q ss_pred --------------HHhc-----C----------CCcH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000292 875 --------------QRLL-----G----------PDHI----QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 921 (1713)
Q Consensus 875 --------------ek~~-----G----------~d~~----~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG 921 (1713)
...+ . ...+ .....+..+|..+...|++++|...++++++..
T Consensus 219 ~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----- 293 (409)
T TIGR00540 219 FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----- 293 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----
Confidence 0000 0 0011 234567778899999999999999999988652
Q ss_pred CCCHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000292 922 PDDLRTQ-DAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVS--DLLDYINPSHDTKGRNVSTLKRKTYVAK 996 (1713)
Q Consensus 922 ~dh~~t~-ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~sva--elL~~LA~~y~~qGdyeEAl~yyeKALe 996 (1713)
+++.... .....+..+.......+...... ..+.++.-. .++..+|.++...|++++|..||+++..
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~--------~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEK--------QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHH--------HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 3332211 11111112211111111111110 111122223 5788999999999999999999995444
No 74
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.72 E-value=3.9e-06 Score=107.47 Aligned_cols=171 Identities=17% Similarity=0.183 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
..+.++..|...+.+|++++|+.++.+++.. .|....+|+.||.+|..+|+.++|+.....|-.+
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL------- 202 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL------- 202 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-------
Confidence 3677888888999999999999999999876 4667789999999999999999999988777554
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 876 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek 876 (1713)
.|.....+..+|.....+|++++|.-||.+|+.. .|.....+..-+.+|.+.|++..|++.|.+++.+.-.
T Consensus 203 -~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 203 -NPKDYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred -CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 2344477888999999999999999999999985 3444677788899999999999999999999887621
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000292 877 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 914 (1713)
Q Consensus 877 ~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALe 914 (1713)
.+...........+..+...++-+.|++.+..++.
T Consensus 274 ---~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 274 ---VDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred ---hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 11112223334456677777777777777777766
No 75
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.68 E-value=1.9e-06 Score=106.67 Aligned_cols=238 Identities=9% Similarity=-0.059 Sum_probs=154.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 000292 721 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 800 (1713)
Q Consensus 721 LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ 800 (1713)
++..+.....+|+++.|..+|.++.+.. ++. ..+ .....+.++...|++++|+..+++.+.. .|.
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~-----~~~-~~~-~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~ 185 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELA-----DND-QLP-VEITRVRIQLARNENHAARHGVDKLLEV--------APR 185 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-----Ccc-hHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCC
Confidence 4445677799999999999999997651 111 112 2233589999999999999999998775 455
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-------------------HHh---------------cCCCChhHHHH
Q 000292 801 TMKSYGDLAVFYYRLQHTELALKYVKRALYLL-------------------HLT---------------CGPSHPNTAAT 846 (1713)
Q Consensus 801 ta~ay~nLA~vy~~lG~~eeALe~yerALeL~-------------------~~i---------------~G~dhP~~a~a 846 (1713)
...++..++.+|...|++++|++.+.+..+.. ... .....+....+
T Consensus 186 ~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~ 265 (398)
T PRK10747 186 HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVAL 265 (398)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHH
Confidence 66788889999999999999997776655310 000 00112233445
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 000292 847 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 926 (1713)
Q Consensus 847 ~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~ 926 (1713)
...+|..+...|+.++|...++++++. ..++..+..+ +. ...++.+++++.+++.++. .++++.
T Consensus 266 ~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l~---~~--l~~~~~~~al~~~e~~lk~-----~P~~~~ 329 (398)
T PRK10747 266 QVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLLI---PR--LKTNNPEQLEKVLRQQIKQ-----HGDTPL 329 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHHH---hh--ccCCChHHHHHHHHHHHhh-----CCCCHH
Confidence 667788888899999999988888762 2233333222 22 2348888888877765532 356665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHh
Q 000292 927 TQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 999 (1713)
Q Consensus 927 t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~d 999 (1713)
...++..+..- .+.+..++......... .++ ...+..++.++..+|+.++|..+|++++.+..
T Consensus 330 l~l~lgrl~~~-~~~~~~A~~~le~al~~--------~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 330 LWSTLGQLLMK-HGEWQEASLAFRAALKQ--------RPD-AYDYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 54444444332 22333333322211111 111 23456899999999999999999999988764
No 76
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.68 E-value=2.3e-06 Score=106.02 Aligned_cols=243 Identities=16% Similarity=0.053 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
.+...+..|...+..|++++|.+.+.++-.. .++|. ..|...+.+...+|+++.|..++.+|...
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p~--l~~llaA~aA~~~g~~~~A~~~l~~A~~~------- 147 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQPV--VNYLLAAEAAQQRGDEARANQHLERAAEL------- 147 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccchH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 4667788899999999999999777664432 12232 22444466669999999999999999764
Q ss_pred CCchh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-
Q 000292 797 DHPDT-MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN- 874 (1713)
Q Consensus 797 Dhp~t-a~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~- 874 (1713)
.++. .......+.++...|++++|+.+++++++. .++|+ .++..++.+|...|++++|++.+.+..+..
T Consensus 148 -~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~-----~P~~~---~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 148 -ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV-----APRHP---EVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred -CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 2222 223334589999999999999999999875 35554 556678999999999999997776655321
Q ss_pred ------------------HHh---------------cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000292 875 ------------------QRL---------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 921 (1713)
Q Consensus 875 ------------------ek~---------------~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG 921 (1713)
... .....+....+...+|..+...|+.++|...+++++..
T Consensus 219 ~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------ 292 (398)
T PRK10747 219 GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR------ 292 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------
Confidence 000 00011223345667799999999999999999888752
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh
Q 000292 922 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1000 (1713)
Q Consensus 922 ~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dS 1000 (1713)
+.++.....+..+ .......+...... ..+.++.-.+++..+|.++...|++.+|..+|++++++..+
T Consensus 293 ~~~~~l~~l~~~l---~~~~~~~al~~~e~--------~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 293 QYDERLVLLIPRL---KTNNPEQLEKVLRQ--------QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred CCCHHHHHHHhhc---cCCChHHHHHHHHH--------HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3344333333222 11222222211110 11223344567899999999999999999999999987543
No 77
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.66 E-value=6e-07 Score=100.88 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=104.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 000292 731 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 810 (1713)
Q Consensus 731 qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~ 810 (1713)
.++.++++..+++++.. +|..+..|..||.+|..+|++++|+..|++|+.+ .|+....+.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 46678888888888876 5667889999999999999999999999999987 4667888999999
Q ss_pred HH-HHcCC--hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 811 FY-YRLQH--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 811 vy-~~lG~--~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
++ ...|+ +++|.+++++++.+ +|....+++++|.++...|++++|+.+|++++++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 74 77787 59999999999985 45556789999999999999999999999999876
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=9.9e-07 Score=107.89 Aligned_cols=178 Identities=19% Similarity=0.181 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
+...-.+|...+...++..|++.|..++.+. .....+.+.|.+|+.+|.+.+.+..+.+|++...... .+
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad 293 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-AD 293 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HH
Confidence 5566677888899999999999999999984 2345678899999999999999999999887643321 12
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH--hc----------------CCCChhHHHHHHHHHHHHHHCCC
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL--TC----------------GPSHPNTAATYINVAMMEEGLGN 859 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~--i~----------------G~dhP~~a~a~~NLA~iy~~lG~ 859 (1713)
.-.++.++..+|..|..+++++.|+.+|++++.-.+. .. ---.|..+.-...-|..+...|+
T Consensus 294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC
Confidence 2335677777899999999999999999998875332 00 00012222223333445555555
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 860 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 860 ~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekAL 913 (1713)
|..|+.+|.+|+... |..+..|.|.|.+|..+|.+..|+..+++++
T Consensus 374 y~~Av~~YteAIkr~--------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD--------PEDARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred HHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555544332 3344455555555555555555555544444
No 79
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=1.4e-07 Score=100.49 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 000292 721 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 800 (1713)
Q Consensus 721 LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ 800 (1713)
++..|..+...|++++|+.+|++++.+ .|....++..+|.++..+|++++|+..|++|+.+ .|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCC
Confidence 556789999999999999999999876 5667889999999999999999999999999986 467
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000292 801 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 855 (1713)
Q Consensus 801 ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~ 855 (1713)
...+++++|.++..+|++++|+.+|.+|+.+ .+++ ...+.+.|.+..
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~-----~p~~---~~~~~~~~~~~~ 137 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM-----SYAD---ASWSEIRQNAQI 137 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHH
Confidence 7889999999999999999999999999986 2333 444555665544
No 80
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=3.7e-06 Score=97.62 Aligned_cols=173 Identities=13% Similarity=0.121 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
...++++|+-|+..|-++.|...|....+. ....-.++..|-.+|....+|++|++..++.+.+-.+ ..
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~ 175 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TY 175 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cc
Confidence 556888999999999999999999887653 1223457888999999999999999988887766322 12
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
....+..|+.||..+....+.+.|...+.+|+.. +|....+-..+|.++...|+|+.|++.++.+++-.
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn--- 244 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQN--- 244 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHhC---
Confidence 4567899999999999999999999999999974 45556666779999999999999999999888753
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~ 916 (1713)
+..+..+.-.|..+|..+|+.++.+.++.++.+.+
T Consensus 245 ----~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 245 ----PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred ----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 44566788888999999999999999999988664
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.65 E-value=5.2e-06 Score=104.91 Aligned_cols=250 Identities=18% Similarity=0.079 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000292 715 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 794 (1713)
Q Consensus 715 s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~l 794 (1713)
..+-..+|.+|..|-.+++++.|..+.+++|++- ....+.++..||.++...+++.+|+....-|+.-....+
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~ 547 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH 547 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 3344678888999999999999999999999872 223467999999999999999999999999987653321
Q ss_pred CCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh---------------------------------------
Q 000292 795 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT--------------------------------------- 835 (1713)
Q Consensus 795 G~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i--------------------------------------- 835 (1713)
+ ....-. .+....++.++|+..+.+.|.+|+..
T Consensus 548 ~-----l~~~~~---~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 548 V-----LMDGKI---HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred h-----hchhhh---hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 1 111111 11122455555555555555555511
Q ss_pred --------------------cCCCChhH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 000292 836 --------------------CGPSHPNT--AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 893 (1713)
Q Consensus 836 --------------------~G~dhP~~--a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA 893 (1713)
-|++|+.. ...+...|..+...++.++|.-++.+|-.+. +..+..|+..|
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~G 691 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLRG 691 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHhh
Confidence 01222221 2345567788888899999999999998776 56778899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCchhhhhcCCccHHHHH
Q 000292 894 IALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA--ARNGTRKPDASIASKGHLSVSDLL 971 (1713)
Q Consensus 894 ~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeA--l~~~~~~~~~a~a~~~~~svaelL 971 (1713)
..+...|++.+|.+.|..|+. +.|+|.....+..-+..-. +.-..+.. +.. .+..-.+..-++|
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~-----ldP~hv~s~~Ala~~lle~-G~~~la~~~~~L~--------dalr~dp~n~eaW 757 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALA-----LDPDHVPSMTALAELLLEL-GSPRLAEKRSLLS--------DALRLDPLNHEAW 757 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHh-----cCCCCcHHHHHHHHHHHHh-CCcchHHHHHHHH--------HHHhhCCCCHHHH
Confidence 999999999999999999985 4789987766654432211 11111111 111 0111223455789
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhh
Q 000292 972 DYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1001 (1713)
Q Consensus 972 ~~LA~~y~~qGdyeEAl~yyeKALeL~dSl 1001 (1713)
+++|.++..+|+.++|.++|+.++++.++.
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999998764
No 82
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=2.5e-07 Score=106.80 Aligned_cols=124 Identities=25% Similarity=0.313 Sum_probs=107.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000292 714 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 793 (1713)
Q Consensus 714 ~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~ 793 (1713)
....|+.|-..|.-++..++|.+|+..|.+||.+ .|..+..|.+.|.+|..+|+|+.|++-++.||.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---- 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence 4467899999999999999999999999999987 5777889999999999999999999999999987
Q ss_pred cCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000292 794 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 861 (1713)
Q Consensus 794 lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~e 861 (1713)
+|....+|..||.+|..+|++++|++.|++||++ .|+......+|.++-..+++..
T Consensus 145 ----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 ----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 6888999999999999999999999999999997 2333455566666655555544
No 83
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.63 E-value=3.9e-06 Score=94.61 Aligned_cols=170 Identities=18% Similarity=0.230 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
....++..|..++..|++.+|+..|++.+..+ +.++....+...+|.+++..|++++|+..+++.+..+ +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 46789999999999999999999999998874 5567788899999999999999999999999998864 6
Q ss_pred CCchhHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHhcCCCChhH--------------HHHHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQH-----------TELALKYVKRALYLLHLTCGPSHPNT--------------AATYINVA 851 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~-----------~eeALe~yerALeL~~~i~G~dhP~~--------------a~a~~NLA 851 (1713)
+|+....+++.+|.+++.+.+ ..+|+..|+..+..+ ++++.. +.--..+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888999999999876532 246666666666542 333322 22345678
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHH
Q 000292 852 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSV 906 (1713)
Q Consensus 852 ~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAl 906 (1713)
..|...|.|..|+..++.+++.+ ++.+....++..|+.+|..+|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999999999999887 677888889999999999999988554
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=3.7e-06 Score=99.67 Aligned_cols=250 Identities=13% Similarity=0.076 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
...+..+|.+++..|++.+|+..|++++-+ +|.....+-..|.++...|+++.-..+-...+.+..
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~------ 297 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK------ 297 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh------
Confidence 445667788999999999999999998765 566677777778888888888776655554444421
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
.++.-++--+.+++..+++..|+.+.++++.. .+.....|..-|.++...|+.++|.-.|+.|..+.
T Consensus 298 --~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--- 364 (564)
T KOG1174|consen 298 --YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--- 364 (564)
T ss_pred --cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc---
Confidence 12333444455667777888888888888764 22334556667888888888888888888887765
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH------hcCC----CCHHHHHHHHHHHH--H-----HHH
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA------KLGP----DDLRTQDAAAWLEY--F-----ESK 940 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk------~LG~----dh~~t~ea~~~La~--L-----~qk 940 (1713)
|....+|..|-..|...|.+.+|....+.++..+.+ .+|. .++.+.+-...+.. + +.+
T Consensus 365 -----p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 365 -----PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred -----hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 455677777778888888888888777777665532 1221 11111111111100 0 000
Q ss_pred -HHHHHHHHH-hcCCCCch---hhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh
Q 000292 941 -AFEQQEAAR-NGTRKPDA---SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1000 (1713)
Q Consensus 941 -a~e~AeAl~-~~~~~~~~---a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dS 1000 (1713)
....++-.. ++...... .....+. .-..++..||.+..+++.+++|+.+|..|+.+...
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~-~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIF-PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhc-cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 001111110 11111000 0011111 22347889999999999999999999999987654
No 85
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=5.5e-07 Score=106.87 Aligned_cols=203 Identities=17% Similarity=0.102 Sum_probs=151.3
Q ss_pred cchhhccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000292 706 PVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK 785 (1713)
Q Consensus 706 PvvK~~~~~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~K 785 (1713)
|..-........+..+...|..++.+.+|.+|+..|..|+.++ |..+..|.+.+.+|+..|+|++|+-.+++
T Consensus 37 ~~~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--------pd~a~yy~nRAa~~m~~~~~~~a~~dar~ 108 (486)
T KOG0550|consen 37 PEYSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC--------PDNASYYSNRAATLMMLGRFEEALGDARQ 108 (486)
T ss_pred ccccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC--------ccchhhhchhHHHHHHHHhHhhcccchhh
Confidence 3333444456678889999999999999999999999999883 45588999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHH--------HHHHHHhcCCC--ChhHHHHHHHHHHHHH
Q 000292 786 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRA--------LYLLHLTCGPS--HPNTAATYINVAMMEE 855 (1713)
Q Consensus 786 AL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerA--------LeL~~~i~G~d--hP~~a~a~~NLA~iy~ 855 (1713)
.+.+ .+.....+..++.|+...++..+|.++|+-. +.....+...+ .|........-+.++.
T Consensus 109 ~~r~--------kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~ 180 (486)
T KOG0550|consen 109 SVRL--------KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLA 180 (486)
T ss_pred heec--------CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhh
Confidence 9876 3444557778888888888888887766521 11111111111 2555556666788999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000292 856 GLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 935 (1713)
Q Consensus 856 ~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La 935 (1713)
-+|++++|+..--..+++. ...+.+++.-|.++...++.+.|+.+|++++ .++++|.....+.....
T Consensus 181 ~~~~~~~a~~ea~~ilkld--------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal-----~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLD--------ATNAEALYVRGLCLYYNDNADKAINHFQQAL-----RLDPDHQKSKSASMMPK 247 (486)
T ss_pred hcccchhHHHHHHHHHhcc--------cchhHHHHhcccccccccchHHHHHHHhhhh-----ccChhhhhHHhHhhhHH
Confidence 9999999988655555443 3456677777999999999999999999999 45888887776665555
Q ss_pred HH
Q 000292 936 YF 937 (1713)
Q Consensus 936 ~L 937 (1713)
.+
T Consensus 248 ~l 249 (486)
T KOG0550|consen 248 KL 249 (486)
T ss_pred HH
Confidence 44
No 86
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.58 E-value=2.1e-06 Score=94.00 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=102.4
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 876 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek 876 (1713)
.++..+.+++++|.+|...|++++|+.+|++++.+. ++++....++.++|.+|...|++++|+.+|++++.+.
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 102 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-- 102 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 456677889999999999999999999999999863 3344556789999999999999999999999999874
Q ss_pred hcCCCcHHHHHHHHHHHHHHHH-------cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000292 877 LLGPDHIQTAASYHAIAIALSL-------MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 936 (1713)
Q Consensus 877 ~~G~d~~~tA~a~~nLA~ay~~-------lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~ 936 (1713)
+.....+..+|.+|.. .++++.|+..+++|++++++.+..++..+..+..|+..
T Consensus 103 ------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 163 (172)
T PRK02603 103 ------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKT 163 (172)
T ss_pred ------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHh
Confidence 2234445566666655 45688889999999999988887777777777777754
No 87
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.57 E-value=1.1e-06 Score=91.18 Aligned_cols=103 Identities=23% Similarity=0.221 Sum_probs=91.3
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 756 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 835 (1713)
Q Consensus 756 hp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i 835 (1713)
+|....++..+|.+++..|++++|+.++++++.+ +|....++.++|.+|..+|++++|+.++++++.+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 5666778899999999999999999999998875 3556788999999999999999999999999875
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 836 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 836 ~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
+|.....++++|.+|...|++++|+.+|++++++.
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35557788999999999999999999999999875
No 88
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.55 E-value=1.9e-06 Score=94.28 Aligned_cols=115 Identities=19% Similarity=0.205 Sum_probs=91.3
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 755 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 834 (1713)
Q Consensus 755 dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~ 834 (1713)
..+..+.+++.+|.+|...|++++|+.+|++++.+. .+.+....++.++|.+|...|++++|+.+|++++.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--- 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 355678899999999999999999999999999873 234445678999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHhcCCCc
Q 000292 835 TCGPSHPNTAATYINVAMMEEGLGN-------VHVALRYLHKALKCNQRLLGPDH 882 (1713)
Q Consensus 835 i~G~dhP~~a~a~~NLA~iy~~lG~-------~eeAle~lekALei~ek~~G~d~ 882 (1713)
+|.....+.++|.+|..+|+ ++.|+..+++|++++++....++
T Consensus 102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34445667778888877654 66777777777777766654443
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2e-06 Score=105.28 Aligned_cols=199 Identities=21% Similarity=0.189 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER--- 792 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er--- 792 (1713)
.++..+.+.|.+|+..|.+.+.+..+..+++.-....- +...++.++..+|..|..+++++.|+.+|++++.-.+.
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 44566677788888889998888888888776433211 12336777888999999999999999999998765432
Q ss_pred ---------hcC------CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000292 793 ---------ELG------LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 857 (1713)
Q Consensus 793 ---------~lG------~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~l 857 (1713)
..+ --.|..+.....-|..++..|+|..|+.+|.+|+.. .|+.+..|.|.|.+|..+
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKL 405 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHH
Confidence 100 123444545556699999999999999999999874 478889999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000292 858 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 937 (1713)
Q Consensus 858 G~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L 937 (1713)
|++..|+...+.++++ ++.....|..-|.++..+.+|++|++.|+++++. ++...++..++...
T Consensus 406 ~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRC 469 (539)
T ss_pred hhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHH
Confidence 9999999999999887 3667788888999999999999999999999854 34555566665544
Q ss_pred HH
Q 000292 938 ES 939 (1713)
Q Consensus 938 ~q 939 (1713)
.+
T Consensus 470 ~~ 471 (539)
T KOG0548|consen 470 VE 471 (539)
T ss_pred HH
Confidence 33
No 90
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.54 E-value=9.4e-06 Score=94.11 Aligned_cols=174 Identities=14% Similarity=0.137 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
....++..|..++..|++++|+..|++.+..+ +..+....+...||.+|+.++++++|+.++++.+... +
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----P 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----c
Confidence 46668889999999999999999999998863 4556677788999999999999999999999999874 7
Q ss_pred CCchhHHHHHHHHHHHHHcC---------------C---hHHHHHHHHHHHHHHHHhcCCCChh--------------HH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQ---------------H---TELALKYVKRALYLLHLTCGPSHPN--------------TA 844 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG---------------~---~eeALe~yerALeL~~~i~G~dhP~--------------~a 844 (1713)
+|+....+++.+|.++..++ + ..+|+..|++.+..+ |+... ++
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 88999999999999875554 1 235556666655542 22221 12
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000292 845 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 910 (1713)
Q Consensus 845 ~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~le 910 (1713)
.--..+|..|.+.|.|..|+.-++.+++-+ ++.+....+++.++.+|..+|..++|.....
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 234567889999999999999999998876 6677888999999999999999999987654
No 91
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.54 E-value=2e-06 Score=92.36 Aligned_cols=102 Identities=15% Similarity=0.004 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000292 757 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 836 (1713)
Q Consensus 757 p~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~ 836 (1713)
++.....+.+|..++..|++++|..+|+-.+.+ +|.....+++||.++..+|+|.+|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 566778889999999999999999999988876 5778899999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 837 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 837 G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
.+++ ...+.++|.+|...|+.+.|++.|+.|+..+
T Consensus 99 ~~dd---p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 KIDA---PQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3444 4678999999999999999999999999988
No 92
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=9.2e-07 Score=99.35 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=103.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000292 773 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 852 (1713)
Q Consensus 773 lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~ 852 (1713)
.++.++++..+++++.. +|.....+..||.+|..+|++++|+.+|++|+.+ .|+...++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 67778899999998876 5777889999999999999999999999999986 2445677889999
Q ss_pred HH-HHCCC--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 853 ME-EGLGN--VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 853 iy-~~lG~--~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~ 916 (1713)
++ ...|+ +++|+..++++++.. +....++++||.++...|++++|+.++++++++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~d--------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALD--------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 74 67787 599999999999875 3445788999999999999999999999998663
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.51 E-value=2.7e-05 Score=98.93 Aligned_cols=269 Identities=18% Similarity=0.124 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN------- 790 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~------- 790 (1713)
.+.++..+.++...|++++|++++.+.... -.+....+-..|.+|..+|++++|...|+..|...
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy 75 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYY 75 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 456677788889999999999999775443 23455677889999999999999999988877651
Q ss_pred ---HHhcCCCC-------chhHHHHHHHHHHHHH------------c-CChHHHH-HH----------------------
Q 000292 791 ---ERELGLDH-------PDTMKSYGDLAVFYYR------------L-QHTELAL-KY---------------------- 824 (1713)
Q Consensus 791 ---Er~lG~Dh-------p~ta~ay~nLA~vy~~------------l-G~~eeAL-e~---------------------- 824 (1713)
+..+|... ......|-.++..|-+ . ..|...+ .|
T Consensus 76 ~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d 155 (517)
T PF12569_consen 76 RGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD 155 (517)
T ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC
Confidence 11111100 0111112111111100 0 0010000 01
Q ss_pred ------HHHHHHHHHHhc------C------CCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000292 825 ------VKRALYLLHLTC------G------PSHPN-TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 885 (1713)
Q Consensus 825 ------yerALeL~~~i~------G------~dhP~-~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~t 885 (1713)
+...+.-+.... . ...|. ...+++.+|..|...|++++|++++++|++.. |..
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--------Pt~ 227 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--------PTL 227 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCc
Confidence 111111111000 0 11232 35778999999999999999999999999864 556
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCc
Q 000292 886 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHL 965 (1713)
Q Consensus 886 A~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~ 965 (1713)
...|...|.+|...|++.+|...++.|..+ ...+ +.+.+...-..+..+..+.+......-...+. ....+..
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~L-----D~~D-RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~ 300 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEAREL-----DLAD-RYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLN 300 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-----Chhh-HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHH
Confidence 778999999999999999999999888644 2222 23333333334445555555443321111110 0111111
Q ss_pred cHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 000292 966 SVSD--LLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTS 1009 (1713)
Q Consensus 966 svae--lL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~q~n~ea~ 1009 (1713)
...- .....|.+|.++|++..|+..|....++++.+..+.-.-|
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH 346 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFH 346 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 1111 2234688899999999999999999999998885544433
No 94
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=2.8e-05 Score=93.57 Aligned_cols=158 Identities=9% Similarity=0.146 Sum_probs=128.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000292 726 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLDHPDTMKS 804 (1713)
Q Consensus 726 ~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lG-d~deAle~~~KAL~I~Er~lG~Dhp~ta~a 804 (1713)
.++...+++++|+.++.+++.+ +|....+++..+.++..+| ++++|+.++.+++.. +|....+
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqa 108 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQI 108 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHH
Confidence 3455678899999999999987 5777789999999999998 689999999999875 5667778
Q ss_pred HHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000292 805 YGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 882 (1713)
Q Consensus 805 y~nLA~vy~~lG~~--eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~ 882 (1713)
+++.+.++..+|+. ++++.++.+++++ +|....++++.++++..+|++++|++++.++|+..
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-------- 172 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-------- 172 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--------
Confidence 99999999999874 7788999898875 46667889999999999999999999999999874
Q ss_pred HHHHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHH
Q 000292 883 IQTAASYHAIAIALSLM---EAY----PLSVQHEQTTLQI 915 (1713)
Q Consensus 883 ~~tA~a~~nLA~ay~~l---Gd~----eeAle~lekALeI 915 (1713)
+....++++.+.++..+ |.+ ++++.+..+++.+
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~ 212 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA 212 (320)
T ss_pred CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Confidence 23356777778777665 333 4677777777754
No 95
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.50 E-value=4.8e-06 Score=110.75 Aligned_cols=172 Identities=10% Similarity=0.078 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
+...+..+....++|+++.|+..|++++.. .|....+...++.++...|++++|+.++++++. .
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~--------p 97 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKA--------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS--------S 97 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc--------C
Confidence 446778889999999999999999999987 333322222788888889999999999999972 1
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
.+.....+..+|.+|..+|++++|+++|+++++. .|....++..++.+|...++.++|+..+++++...
T Consensus 98 ~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--- 166 (822)
T PRK14574 98 MNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--- 166 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---
Confidence 2344556666788999999999999999999985 23334556678999999999999999999888764
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 927 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t 927 (1713)
+. ...+..++.++..+++..+|++.++++++. .++....
T Consensus 167 -----p~-~~~~l~layL~~~~~~~~~AL~~~ekll~~-----~P~n~e~ 205 (822)
T PRK14574 167 -----PT-VQNYMTLSYLNRATDRNYDALQASSEAVRL-----APTSEEV 205 (822)
T ss_pred -----cc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh-----CCCCHHH
Confidence 11 122233455665677777799999988865 3555544
No 96
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.49 E-value=3.1e-06 Score=90.84 Aligned_cols=102 Identities=12% Similarity=0.029 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000292 715 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 794 (1713)
Q Consensus 715 s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~l 794 (1713)
......+|..|..++.+|++++|..+|+-...+ ++..+..|++||.++..+|+|.+|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 445778889999999999999999999887765 5778889999999999999999999999999987
Q ss_pred CCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 795 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 832 (1713)
Q Consensus 795 G~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~ 832 (1713)
.++....+.++|.||...|+.+.|.+.|+.|+.++
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 35567889999999999999999999999999986
No 97
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.44 E-value=3.3e-06 Score=84.79 Aligned_cols=104 Identities=20% Similarity=0.154 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 000292 761 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 840 (1713)
Q Consensus 761 ~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dh 840 (1713)
..++.+|..+..+|++++|+.++.+++.. .++++....+++.+|.++...|++++|+.+|++++.. .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 46789999999999999999999999875 2455666788999999999999999999999999975 3556
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 841 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 841 P~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
+....++.++|.++..+|++++|+.+++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 6667789999999999999999999999999875
No 98
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.43 E-value=2.1e-06 Score=104.89 Aligned_cols=97 Identities=22% Similarity=0.246 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 798 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dh 798 (1713)
..|...|..++..|+|++|+.+|.+|+.+ .+..+.+|.++|.+|..+|++++|+.++++|+.+ .
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~ 66 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------D 66 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 34677899999999999999999999987 4556779999999999999999999999999987 4
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 799 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 799 p~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
|....+|+++|.+|+.+|+|++|+.+|++++.+
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 566788999999999999999999999999986
No 99
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.42 E-value=3.6e-05 Score=105.21 Aligned_cols=168 Identities=11% Similarity=-0.003 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000292 720 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 799 (1713)
Q Consensus 720 ~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp 799 (1713)
.+..+...|.+.|++++|+.+|.+.... | ..|. ..+|+.|...|...|++++|..++.+..... .|. .|
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~-----G-v~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~---~gi-~P 577 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSK-----N-VKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAET---HPI-DP 577 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc---CCC-CC
Confidence 3334446667778888887777766543 1 1222 3466777777777777777777776654320 011 12
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000292 800 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 879 (1713)
Q Consensus 800 ~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G 879 (1713)
+ ..+|..|-..|.+.|++++|+++|++..+. +.+....+|+.+...|.+.|++++|+.+|++..+.-
T Consensus 578 D-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G----- 644 (1060)
T PLN03218 578 D-HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG----- 644 (1060)
T ss_pred c-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----
Confidence 2 345666666777777777777777665542 111123456666666777777777777666654321
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 880 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 880 ~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekAL 913 (1713)
- .+. ..+|..|..+|...|++++|.+++++..
T Consensus 645 v-~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 645 V-KPD-EVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred C-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 0 111 2345555666666666666666665543
No 100
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.41 E-value=1.4e-05 Score=85.16 Aligned_cols=137 Identities=22% Similarity=0.149 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 795 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG 795 (1713)
..+...|..+...+..++...+...+++.+.- .+..+....+...+|.+++..|++++|...|++++.. .
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~ 78 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----A 78 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----C
Confidence 34566777777777899999887777666554 2344556778889999999999999999999999874 2
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000292 796 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 871 (1713)
Q Consensus 796 ~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekAL 871 (1713)
.+......+...||.++...|++++|+..++.. .+.+.....+..+|.+|...|++++|+..|++||
T Consensus 79 ~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 79 PDPELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 334444578889999999999999999998652 2234455677789999999999999999999885
No 101
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.40 E-value=3.6e-06 Score=84.50 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000292 803 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 882 (1713)
Q Consensus 803 ~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~ 882 (1713)
.+++.+|..+...|++++|+++|.+++.. .++++....++..+|.++...|++++|+.+|++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 56889999999999999999999999875 34555567788999999999999999999999999765 455
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 000292 883 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 930 (1713)
Q Consensus 883 ~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea 930 (1713)
+....+++.+|.+|..+|++++|+.++++++.. .+++.....+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~ 115 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKLA 115 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHHH
Confidence 555677899999999999999999999998865 3555544333
No 102
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.40 E-value=1.4e-05 Score=99.50 Aligned_cols=240 Identities=11% Similarity=0.095 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 798 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dh 798 (1713)
..+|..+.-++..++|...+..++..|.. +++...++...|..+.-+|+-++|..+.+.++.. +
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d 71 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------D 71 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcccchHHHHHHHHHHhcc--------C
Confidence 35677777888899999999999988874 3344456777899999999999999999999873 4
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000292 799 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 878 (1713)
Q Consensus 799 p~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~ 878 (1713)
+....++.-+|.++..-.+|++|+++|+.|+.+ .++...++..++.+..++++++-....-.+.|++.
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~---- 139 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR---- 139 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----
Confidence 555678889999999999999999999999986 34557788999999999999988777666666654
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000292 879 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 958 (1713)
Q Consensus 879 G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a 958 (1713)
+..-..|..+|..+...|++..|...++.-.......+........++...-..........+.++..... ....
T Consensus 140 ----~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~-~e~~ 214 (700)
T KOG1156|consen 140 ----PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD-NEKQ 214 (700)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh-hhhH
Confidence 34446677888999999999999988776554433222222222222222222222222222222221110 0000
Q ss_pred hhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000292 959 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 996 (1713)
Q Consensus 959 ~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALe 996 (1713)
+ .+-......-+.++..++++++|...|...+.
T Consensus 215 i-----~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 215 I-----VDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred H-----HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 0 01122345567778888999999887766554
No 103
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.38 E-value=5.1e-05 Score=103.71 Aligned_cols=239 Identities=13% Similarity=0.055 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
...+..+...|.+.|++++|.++|.+...... | ..|+ ..+|..|...|...|++++|.++|++.... |
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~---g-i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-----g-- 609 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETH---P-IDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-----N-- 609 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC---C-CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C--
Confidence 34455556788899999999999998865311 1 1233 457888899999999999999999887653 2
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
-......|+.|...|.+.|++++|+++|.+.... | -.|+ ..+|+.+...|...|++++|++++++.++..
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G--- 679 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQG--- 679 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---
Confidence 2234578899999999999999999999987652 2 2344 4578889999999999999999999877532
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCC
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKP 955 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La--~L~qka~e~AeAl~~~~~~~ 955 (1713)
. .....+|..|..+|...|++++|++.|++.... -..++ .. .+..|. +...+..+.+..+......
T Consensus 680 --~--~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~---g~~Pd-vv---tyN~LI~gy~k~G~~eeAlelf~eM~~- 747 (1060)
T PLN03218 680 --I--KLGTVSYSSLMGACSNAKNWKKALELYEDIKSI---KLRPT-VS---TMNALITALCEGNQLPKALEVLSEMKR- 747 (1060)
T ss_pred --C--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC-HH---HHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 1 123457888899999999999999998865421 12222 22 222232 2333333333332221100
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000292 956 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 996 (1713)
Q Consensus 956 ~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALe 996 (1713)
.+.......|..+-..+...|++++|..++.+.++
T Consensus 748 ------~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 748 ------LGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred ------cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00111223566666888999999999999988765
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=1.2e-05 Score=106.40 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=116.1
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000292 712 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 791 (1713)
Q Consensus 712 ~~~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~E 791 (1713)
.+.......+..+...+...+++++|+.++..+++. +|.....|+.+|.+|+..+++.+|... .++.+..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~ 94 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS 94 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence 344555777778888999999999999999988876 677788999999999999998887766 4444422
Q ss_pred H------------hcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 000292 792 R------------ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 859 (1713)
Q Consensus 792 r------------~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~ 859 (1713)
. .. .+++..-.+++.||.||-.+|++++|...|++++++ .|.-+.+++|+|..|... +
T Consensus 95 ~~~~~~~ve~~~~~i-~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 95 QNLKWAIVEHICDKI-LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred cccchhHHHHHHHHH-HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-h
Confidence 1 11 123444568999999999999999999999999986 256678899999999999 9
Q ss_pred HHHHHHHHHHHHHHH
Q 000292 860 VHVALRYLHKALKCN 874 (1713)
Q Consensus 860 ~eeAle~lekALei~ 874 (1713)
+++|+.++.+|+..+
T Consensus 165 L~KA~~m~~KAV~~~ 179 (906)
T PRK14720 165 KEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
No 105
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.36 E-value=3.5e-05 Score=99.13 Aligned_cols=171 Identities=14% Similarity=0.067 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
...++.+|.+|-++|+.++|+..+..|-.+ .|..-..|..++.....+|.+.+|.-+|.+||..
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--------~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~-------- 236 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHL--------NPKDYELWKRLADLSEQLGNINQARYCYSRAIQA-------- 236 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------
Confidence 456788899999999999999888766544 2223367888999999999999999999999986
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN-TAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 876 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~-~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek 876 (1713)
.|.....+..-+.+|.++|++..|+..|.+++.+. ++..-. ........+..+...++-+.|++.++.++.....
T Consensus 237 ~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~----p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 237 NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD----PPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC----CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 35557888999999999999999999999998863 222222 3334455677888888889999999999884322
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000292 877 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 914 (1713)
Q Consensus 877 ~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALe 914 (1713)
.. ....+..++.+|.....++.|+.....-..
T Consensus 313 ~~------~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 313 EA------SLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred cc------cccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 22 223345568888888888888876654443
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.36 E-value=5e-06 Score=109.72 Aligned_cols=220 Identities=6% Similarity=-0.064 Sum_probs=159.9
Q ss_pred cCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 752 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 752 ~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
.+...+....++..|..+|...+++++|+..++.++.. +|..+..|+.+|.+|+..+++.+|.-. +++.+
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 34567888899999999999999999999999988764 688889999999999999999888765 55554
Q ss_pred HHHhc-----------CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 000292 832 LHLTC-----------GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 900 (1713)
Q Consensus 832 ~~~i~-----------G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lG 900 (1713)
..... -.+++..-.++..+|.+|..+|++++|...|+++|++. +..+.++.++|..|...
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-
Confidence 32210 01133344688999999999999999999999999875 55678899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCCchhhhhcCCccHHHHHHHHHHHH
Q 000292 901 AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE--AARNGTRKPDASIASKGHLSVSDLLDYINPSH 978 (1713)
Q Consensus 901 d~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~Ae--Al~~~~~~~~~a~a~~~~~svaelL~~LA~~y 978 (1713)
++++|++++.+|+..+-..- ........|..++...-.+... .+..... .........+++.-|-..|
T Consensus 164 dL~KA~~m~~KAV~~~i~~k----q~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~------~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 164 DKEKAITYLKKAIYRFIKKK----QYVGIEEIWSKLVHYNSDDFDFFLRIERKVL------GHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred hHHHHHHHHHHHHHHHHhhh----cchHHHHHHHHHHhcCcccchHHHHHHHHHH------hhhccchhHHHHHHHHHHH
Confidence 99999999999998864331 1111222354444332221111 1110000 0001224566788888899
Q ss_pred HHCCCHHHHHHHHHHHHHHHhh
Q 000292 979 DTKGRNVSTLKRKTYVAKVKGN 1000 (1713)
Q Consensus 979 ~~qGdyeEAl~yyeKALeL~dS 1000 (1713)
...++|++++.++++++++..+
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCc
Confidence 9999999999999999998765
No 107
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.36 E-value=8.8e-06 Score=84.50 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 795 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG 795 (1713)
.....++.+|..++..|++++|+.++++++.+ ++....++..+|.+|+.+|++++|+.++++++.+
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------ 80 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL------ 80 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 34566788899999999999999999998876 3455678999999999999999999999999875
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 796 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 796 ~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
+|.....++++|.+|...|++++|+.+|++++++
T Consensus 81 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 81 --DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred --CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4666788999999999999999999999999986
No 108
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.35 E-value=1.1e-05 Score=99.85 Aligned_cols=223 Identities=16% Similarity=0.034 Sum_probs=122.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 000292 729 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 808 (1713)
Q Consensus 729 l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nL 808 (1713)
+...+++.|..+|.+|... ..+.++|+.-+.+.+.++..++|+.+++++|..+ |.....|..+
T Consensus 629 ~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lml 691 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLML 691 (913)
T ss_pred hccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHH
Confidence 3444555555555555432 1234455555666666666666666666666542 4445566666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 000292 809 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 888 (1713)
Q Consensus 809 A~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a 888 (1713)
|.++..+++.+.|.+.|...+..+ |...-.+..|+.+-...|+.-.|...|+++.-- .|..+..
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~c--------P~~ipLWllLakleEk~~~~~rAR~ildrarlk--------NPk~~~l 755 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKKC--------PNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--------NPKNALL 755 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhccccC--------CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--------CCCcchh
Confidence 666666666666666665555432 333444555666666666666666666655422 1333344
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHH
Q 000292 889 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVS 968 (1713)
Q Consensus 889 ~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~sva 968 (1713)
|...-+.-.+.|..+.|...+.+||+-+. ..........||.---++......|++.. .. -.
T Consensus 756 wle~Ir~ElR~gn~~~a~~lmakALQecp-----~sg~LWaEaI~le~~~~rkTks~DALkkc----------e~---dp 817 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLMAKALQECP-----SSGLLWAEAIWLEPRPQRKTKSIDALKKC----------EH---DP 817 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----ccchhHHHHHHhccCcccchHHHHHHHhc----------cC---Cc
Confidence 44444455566667777666666665432 11111111112211111111112222211 11 12
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhc
Q 000292 969 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1002 (1713)
Q Consensus 969 elL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~ 1002 (1713)
.++..+|..+....++++|.++|.+++++...++
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 3578899999999999999999999999988777
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.35 E-value=6.5e-06 Score=93.92 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=125.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000292 722 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 801 (1713)
Q Consensus 722 lelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~t 801 (1713)
...+..+...|+-+++..+..+++.. ++.....+..+|......|+|.+|+..++++..+ .|..
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d 133 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTD 133 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCC
Confidence 45567777888888888887776533 3444445556899999999999999999999876 4667
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 802 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 881 (1713)
Q Consensus 802 a~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d 881 (1713)
...|+.+|.+|.+.|+++.|..-|.+|+++. ++. ..+++|||..|.-.|+++.|..++..+...- .
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-----~~~---p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-----~- 199 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELA-----PNE---PSIANNLGMSLLLRGDLEDAETLLLPAYLSP-----A- 199 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhc-----cCC---chhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-----C-
Confidence 8899999999999999999999999999974 222 4568999999999999999999998886532 1
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000292 882 HIQTAASYHAIAIALSLMEAYPLSVQHE 909 (1713)
Q Consensus 882 ~~~tA~a~~nLA~ay~~lGd~eeAle~l 909 (1713)
.-..+..+|+.+...+|+++.|....
T Consensus 200 --ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 200 --ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred --CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 23366789999999999999987643
No 110
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.34 E-value=5.7e-05 Score=100.78 Aligned_cols=127 Identities=12% Similarity=0.102 Sum_probs=94.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 000292 723 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 802 (1713)
Q Consensus 723 elA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta 802 (1713)
.++.++...|++++|+.++++++. + .+.....+..+|.+|..+|++++|+++|++++.. +|...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~-------p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~ 136 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQS-------S-MNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNP 136 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhcc-------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCH
Confidence 344566677999999999999872 1 2233455666688999999999999999999875 34446
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 803 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 803 ~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
.++..|+.+|...++.++|++.++++... .|. ...+..++.++...+++.+|++.|+++++..
T Consensus 137 ~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------dp~-~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 137 DLISGMIMTQADAGRGGVVLKQATELAER--------DPT-VQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhccc--------Ccc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 66678899999999999999999888764 233 2223445666666777777999999888764
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=1.3e-05 Score=100.94 Aligned_cols=166 Identities=20% Similarity=0.252 Sum_probs=138.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000292 725 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 804 (1713)
Q Consensus 725 A~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~a 804 (1713)
+..|...|++-.=..+|++|.++.+.+ .+.+.+.+|...+..++|.+|..+++.++.+ .|.....
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~ 521 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGT 521 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhH
Confidence 456777888888888999999886554 3557777888888899999999999999987 4777899
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000292 805 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 884 (1713)
Q Consensus 805 y~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~ 884 (1713)
|+++|.+..+.+++..|.++|.+++.+ .|+.+.+++|++..|...|+-.+|...+++|+++. .+|+.
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-----~~~w~ 588 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-----YQHWQ 588 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-----CCCCe
Confidence 999999999999999999999999875 46668899999999999999999999999999986 23333
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000292 885 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 921 (1713)
Q Consensus 885 tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG 921 (1713)
.+-|.-.+....|.+++|+..|.+-+.+-+....
T Consensus 589 ---iWENymlvsvdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 589 ---IWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred ---eeechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence 3444456778899999999999998888766543
No 112
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.30 E-value=5.7e-06 Score=101.05 Aligned_cols=96 Identities=22% Similarity=0.226 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh
Q 000292 763 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 842 (1713)
Q Consensus 763 y~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~ 842 (1713)
+...|..++..|+|++|+.+|++||.+ .|....+|.++|.+|..+|++++|+.++++|+.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 556788999999999999999999986 4566789999999999999999999999999986 244
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 843 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 843 ~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
...+|+++|.+|..+|+|++|+.+|++++++.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999875
No 113
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00044 Score=78.23 Aligned_cols=241 Identities=17% Similarity=0.065 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 000292 735 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 814 (1713)
Q Consensus 735 eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~ 814 (1713)
.+|.+...+.+.. +.++....+..|..-+.+|....+|++|...+++|+..+|... .-...+.+|-..|.+...
T Consensus 10 ~ea~e~~a~t~~~----wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake 83 (308)
T KOG1585|consen 10 SEADEMTALTLTR----WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKE 83 (308)
T ss_pred HHHHHHHHHHhhc----cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHH
Confidence 3444444443332 3455566677888888999999999999999999998887632 223456889999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 000292 815 LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAI 894 (1713)
Q Consensus 815 lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ 894 (1713)
+..+.++..+|++|..++.+.. .|+.+..-..-|--....-+.++|+.+|++++.+.+.- ....+....+...++
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~G---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECG---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSR 158 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhC---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhh
Confidence 9999999999999999998853 34444333333334456678999999999999998542 223344566778899
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHH
Q 000292 895 ALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYI 974 (1713)
Q Consensus 895 ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~L 974 (1713)
+|.....|.+|-..+.+-..+..+.-.-...--+.....|.++....+..++..............+ .....+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s----ed~r~lenL 234 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS----EDSRSLENL 234 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh----HHHHHHHHH
Confidence 9999999999988888877777665444444444555667788877887777665432222111111 122234444
Q ss_pred HHHHHHCCCHHHHHHHH
Q 000292 975 NPSHDTKGRNVSTLKRK 991 (1713)
Q Consensus 975 A~~y~~qGdyeEAl~yy 991 (1713)
=..| ..|+.+++...+
T Consensus 235 L~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 235 LTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHh-ccCCHHHHHHHH
Confidence 4444 468888776554
No 114
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.28 E-value=5e-05 Score=100.69 Aligned_cols=235 Identities=13% Similarity=0.039 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 798 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dh 798 (1713)
..+..+...|...|++++|+.+|++.... |. .+. ..+|..+..+|...|++++|...+...+.. |.
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~-----g~-~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-----g~-- 356 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDS-----GV-SID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----GF-- 356 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHh-----CC--
Confidence 34555667788889999999998887542 11 122 336666777777777777777766655432 11
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHH-------------------------------HHHHHHHHHHhcCCCChhHHHHH
Q 000292 799 PDTMKSYGDLAVFYYRLQHTELALKY-------------------------------VKRALYLLHLTCGPSHPNTAATY 847 (1713)
Q Consensus 799 p~ta~ay~nLA~vy~~lG~~eeALe~-------------------------------yerALeL~~~i~G~dhP~~a~a~ 847 (1713)
+....+|+.|...|.+.|++++|++. |++.+.. | -.|+ ..+|
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g-~~Pd-~~T~ 429 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-----G-VAPN-HVTF 429 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCCC-HHHH
Confidence 11123344444455555555555444 4443321 1 1122 2234
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 000292 848 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 927 (1713)
Q Consensus 848 ~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t 927 (1713)
..+-..+...|.+++|+++|+...+.. |.. + ....|..+..+|.+.|++++|.+.+++.- ..+ +..+
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~----g~~-p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~------~~p-~~~~ 496 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSENH----RIK-P-RAMHYACMIELLGREGLLDEAYAMIRRAP------FKP-TVNM 496 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhc----CCC-C-CccchHhHHHHHHhcCCHHHHHHHHHHCC------CCC-CHHH
Confidence 444444455555555555554443321 110 1 12335555666666666666666554320 111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000292 928 QDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 996 (1713)
Q Consensus 928 ~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALe 996 (1713)
..++.. ++...+..+.++.......... +.....|..|..+|...|++++|.+.+++..+
T Consensus 497 ~~~Ll~-a~~~~g~~~~a~~~~~~l~~~~--------p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 497 WAALLT-ACRIHKNLELGRLAAEKLYGMG--------PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHH-HHHHcCCcHHHHHHHHHHhCCC--------CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 111110 1112222222222211111111 11123578889999999999999998876554
No 115
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=6.3e-06 Score=95.57 Aligned_cols=102 Identities=23% Similarity=0.282 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000292 757 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 836 (1713)
Q Consensus 757 p~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~ 836 (1713)
...|..+-.-|.-++..++|.+|+..|.+||.+ .|..+..|.|-|.+|.++|+|+.|++-++.|+.+
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i----- 144 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI----- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----
Confidence 344566677788889999999999999999987 5777889999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 837 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 837 G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
+|....+|..||.+|..+|++++|++.|++||++.
T Consensus 145 ---Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 145 ---DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred ---ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence 57789999999999999999999999999999885
No 116
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.26 E-value=4.9e-05 Score=80.97 Aligned_cols=123 Identities=18% Similarity=0.093 Sum_probs=96.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000292 772 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 851 (1713)
Q Consensus 772 ~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA 851 (1713)
..++...+...+++.+.- .++++....+.+.+|.+++..|++++|...|+.++.. .++......+...||
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHH
Confidence 577777777666665543 3445566788999999999999999999999999874 233344456788899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 852 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 852 ~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekAL 913 (1713)
.++...|++++|+..++.. .+.......+..+|.+|..+|++++|+..|++|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999998651 2233455677789999999999999999999874
No 117
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=8.6e-05 Score=91.99 Aligned_cols=218 Identities=19% Similarity=0.138 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
...++..-..+...|+|++|+....+.|.+. ++.. .+.+.--.++...+.|++|+.+.++-...
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-----pdd~---~a~~cKvValIq~~ky~~ALk~ikk~~~~-------- 75 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIV-----PDDE---DAIRCKVVALIQLDKYEDALKLIKKNGAL-------- 75 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcC-----CCcH---hhHhhhHhhhhhhhHHHHHHHHHHhcchh--------
Confidence 3455555566778889999988888877662 3333 33333445666778888887544332211
Q ss_pred CchhHHHH-HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-
Q 000292 798 HPDTMKSY-GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ- 875 (1713)
Q Consensus 798 hp~ta~ay-~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~e- 875 (1713)
.....+ +.-|.|++++++.++|+..++ .+ .... -.++..-|.+++++|+|++|+..|+..++-..
T Consensus 76 --~~~~~~~fEKAYc~Yrlnk~Dealk~~~-~~-------~~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 76 --LVINSFFFEKAYCEYRLNKLDEALKTLK-GL-------DRLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred --hhcchhhHHHHHHHHHcccHHHHHHHHh-cc-------cccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 111122 677889999999999998887 11 1122 23444568888999999999999987643110
Q ss_pred ----------------------HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 000292 876 ----------------------RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 933 (1713)
Q Consensus 876 ----------------------k~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~ 933 (1713)
+........+...+||.|.++...|+|.+|++.+++|+.+.++.+..++...-+..
T Consensus 143 d~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie-- 220 (652)
T KOG2376|consen 143 DQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIE-- 220 (652)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHH--
Confidence 11111122355778999999999999999999999999999887765543200000
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000292 934 LEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 997 (1713)
Q Consensus 934 La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL 997 (1713)
..++-+.-.++.++..+|+.++|...|...++.
T Consensus 221 -------------------------------~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 221 -------------------------------EELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred -------------------------------HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 023334556677777778887777777665543
No 118
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=2.9e-05 Score=92.38 Aligned_cols=181 Identities=17% Similarity=0.151 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000292 720 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 799 (1713)
Q Consensus 720 ~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp 799 (1713)
.++-.+...+...++..|+.+..+++.. ++....+|..-|.++..+|+.++|+..|+.|+.+. |
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--------p 365 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--------P 365 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------h
Confidence 3344445555566666666666666654 22333455556666666666666666666665542 3
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH------hcC----------------------CCChhHHHHHHHHH
Q 000292 800 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL------TCG----------------------PSHPNTAATYINVA 851 (1713)
Q Consensus 800 ~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~------i~G----------------------~dhP~~a~a~~NLA 851 (1713)
....+|..|-.+|...|++.+|+.....++..+.. .+| .-.|....+-..+|
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIA 445 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHH
Confidence 44566666666666666666666555544443321 011 01345556667788
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 000292 852 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 930 (1713)
Q Consensus 852 ~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea 930 (1713)
.++...|.+..++.+++++|..+ .| ...+..||.++...+.+++|..+|..|+.+ .|.+..++.-
T Consensus 446 EL~~~Eg~~~D~i~LLe~~L~~~-----~D----~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~-----dP~~~~sl~G 510 (564)
T KOG1174|consen 446 ELCQVEGPTKDIIKLLEKHLIIF-----PD----VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ-----DPKSKRTLRG 510 (564)
T ss_pred HHHHhhCccchHHHHHHHHHhhc-----cc----cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----CccchHHHHH
Confidence 88888899999999999888776 11 245667889999999999999999888854 4555544433
No 119
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.0005 Score=85.52 Aligned_cols=157 Identities=16% Similarity=0.126 Sum_probs=115.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-----------
Q 000292 722 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN----------- 790 (1713)
Q Consensus 722 lelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~----------- 790 (1713)
|+.|.++++.+..++|+..++ .+ .. ..-.++..-|.++|.+|+|++|+..|+..+.-.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~-------~~---~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GL-------DR---LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-cc-------cc---cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 788888899999999999887 11 12 223466778999999999999999998763210
Q ss_pred ------------HHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHH
Q 000292 791 ------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH-------PNTAATYINVA 851 (1713)
Q Consensus 791 ------------Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dh-------P~~a~a~~NLA 851 (1713)
.+........+...++|.|.++...|+|.+|++.+++|+.++++.+..+. .++..+...|+
T Consensus 152 l~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 152 LLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 01111122336678899999999999999999999999999887654332 23566778899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 000292 852 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 893 (1713)
Q Consensus 852 ~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA 893 (1713)
.+++.+|+.++|...|...++.. -.|.+..+.+-+||-
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLv 269 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLV 269 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchh
Confidence 99999999999999998877653 245555555555544
No 120
>PLN02789 farnesyltranstransferase
Probab=98.20 E-value=4.9e-05 Score=91.54 Aligned_cols=183 Identities=11% Similarity=0.058 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHh
Q 000292 717 DGRQLLESSKTALDKG-KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF--NQATIYQQKALDINERE 793 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG-~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~--deAle~~~KAL~I~Er~ 793 (1713)
....+..++.++...| ++++|+.++.+++.. ++....+++..+.++..+|+. ++++.++.+++.+
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~---- 137 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL---- 137 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh----
Confidence 3455666777777777 579999999999876 566677899999999999874 6788888888875
Q ss_pred cCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---CCH----HHHHHH
Q 000292 794 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---GNV----HVALRY 866 (1713)
Q Consensus 794 lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~l---G~~----eeAle~ 866 (1713)
++....++.+.+.++...|++++|++++.++|++ ++.-..++++.+.++... |.+ ++++.+
T Consensus 138 ----dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 138 ----DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred ----CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 5777889999999999999999999999999986 344467788888888766 333 467888
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000292 867 LHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES 939 (1713)
Q Consensus 867 lekALei~ek~~G~d~~~tA~a~~nLA~ay~~----lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~q 939 (1713)
..+++.+. |....+++.++.++.. ++...+|+..+.+++. ..+....++.+|+.+..
T Consensus 206 ~~~aI~~~--------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--------~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 206 TIDAILAN--------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--------KDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHhC--------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--------ccCCcHHHHHHHHHHHH
Confidence 88888765 3445677788888877 3455667777666543 12334456667766654
No 121
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.20 E-value=6.3e-05 Score=99.79 Aligned_cols=196 Identities=11% Similarity=0.017 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 000292 762 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 841 (1713)
Q Consensus 762 ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP 841 (1713)
+|+.|...|...|++++|+.+|++.... |. .|+ ..+|..+...|...|++++|.+.+..+++. | .+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~-----g~-~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-----g--~~ 357 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDS-----GV-SID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----G--FP 357 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHh-----C--CC
Confidence 4555555555555555555555443221 11 111 234555555555555555555555554432 1 11
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000292 842 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 921 (1713)
Q Consensus 842 ~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG 921 (1713)
....+++.|..+|.+.|++++|.+.|++..+ . ...+|..|...|...|+.++|++.+++..+ .-..
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~---~g~~ 423 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR-------K----NLISWNALIAGYGNHGRGTKAVEMFERMIA---EGVA 423 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-------C----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCC
Confidence 1133455566666666666666666654321 1 224577778888888888888888876542 2223
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000292 922 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTY 993 (1713)
Q Consensus 922 ~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeK 993 (1713)
++.......... ....+..+.+..+...... ..........|..+..+|.+.|++++|++.+++
T Consensus 424 Pd~~T~~~ll~a--~~~~g~~~~a~~~f~~m~~------~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 424 PNHVTFLAVLSA--CRYSGLSEQGWEIFQSMSE------NHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred CCHHHHHHHHHH--HhcCCcHHHHHHHHHHHHH------hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 332221111111 1122223332222211100 000011123566777777788888888777654
No 122
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.19 E-value=0.00018 Score=83.68 Aligned_cols=174 Identities=18% Similarity=0.164 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 000292 759 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 838 (1713)
Q Consensus 759 ~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~ 838 (1713)
.+..++..|..++..|+|++|+..|++.+... +..+....+...||.+|+.++++++|+.++++.+.. -+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----Cc
Confidence 35567789999999999999999999998853 455667788899999999999999999999999986 47
Q ss_pred CChhHHHHHHHHHHHHHHCC---------------C---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH----------
Q 000292 839 SHPNTAATYINVAMMEEGLG---------------N---VHVALRYLHKALKCNQRLLGPDHIQTAASYH---------- 890 (1713)
Q Consensus 839 dhP~~a~a~~NLA~iy~~lG---------------~---~eeAle~lekALei~ek~~G~d~~~tA~a~~---------- 890 (1713)
+||....+++.+|.++..++ + ..+|+..|++.++.+ +++.....+..
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 89999999999998865544 1 234556666655544 44443333332
Q ss_pred ----HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCcc
Q 000292 891 ----AIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 966 (1713)
Q Consensus 891 ----nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~s 966 (1713)
.+|..|...|.|..|+..++..++- -++...
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~---------------------------------------------Yp~t~~ 210 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRD---------------------------------------------YPDTQA 210 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHH---------------------------------------------CCCCch
Confidence 3344444444444444433332211 122335
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000292 967 VSDLLDYINPSHDTKGRNVSTLKRKT 992 (1713)
Q Consensus 967 vaelL~~LA~~y~~qGdyeEAl~yye 992 (1713)
..+.+..+..+|..+|..++|..+..
T Consensus 211 ~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 211 TRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 66788889999999999998876654
No 123
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.17 E-value=5.7e-05 Score=97.41 Aligned_cols=233 Identities=13% Similarity=0.010 Sum_probs=167.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 000292 732 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 811 (1713)
Q Consensus 732 G~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~v 811 (1713)
.+...|+..|-+++.+ .+..+.++..||.+|+...+...|..+|++|.++ ++..+.+.-.++..
T Consensus 472 K~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adt 535 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADT 535 (1238)
T ss_pred hhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHH
Confidence 3477788888888876 5677889999999999999999999999999876 45556777789999
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 000292 812 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA 891 (1713)
Q Consensus 812 y~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~n 891 (1713)
|....+++.|.....++-+.... -.....+..+|..|...+++..|+..|+.||+.. |....++..
T Consensus 536 yae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--------PkD~n~W~g 601 (1238)
T KOG1127|consen 536 YAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--------PKDYNLWLG 601 (1238)
T ss_pred hhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcCC--------chhHHHHHH
Confidence 99999999999885444332211 0112334458999999999999999999999765 566788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-chhhhhcCCccHHHH
Q 000292 892 IAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP-DASIASKGHLSVSDL 970 (1713)
Q Consensus 892 LA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~-~~a~a~~~~~svael 970 (1713)
||.+|...|.+..|++.+.+|.. +.|.+... ....+.+....++..++........ ...........+++.
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~-----LrP~s~y~---~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~ 673 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASL-----LRPLSKYG---RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAES 673 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHh-----cCcHhHHH---HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999999998874 34554332 2222223333333332222111000 011112233478889
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhc
Q 000292 971 LDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1002 (1713)
Q Consensus 971 L~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~ 1002 (1713)
+..++..+..+|=+.+|..+++++++..--+-
T Consensus 674 ~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 674 VIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765443
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.17 E-value=8.3e-05 Score=85.10 Aligned_cols=144 Identities=17% Similarity=0.113 Sum_probs=116.4
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 756 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 835 (1713)
Q Consensus 756 hp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i 835 (1713)
.|....+ .+++..++..|+-+.++.+..+++.. ++.....+..+|....+.|+|..|+..+++|..+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----
Confidence 4555555 88999999999999999988887543 4444455555899999999999999999999875
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 836 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 836 ~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
.|.-..+++.+|.+|.+.|++++|...|.+|+++. +.-...+.|||..|...|+++.|..++..++
T Consensus 130 ----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~-- 195 (257)
T COG5010 130 ----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAY-- 195 (257)
T ss_pred ----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHH--
Confidence 35557889999999999999999999999999987 2234678899999999999999999999887
Q ss_pred HHHhcCCCCHHHHH
Q 000292 916 LRAKLGPDDLRTQD 929 (1713)
Q Consensus 916 ~kk~LG~dh~~t~e 929 (1713)
..+..+.....
T Consensus 196 ---l~~~ad~~v~~ 206 (257)
T COG5010 196 ---LSPAADSRVRQ 206 (257)
T ss_pred ---hCCCCchHHHH
Confidence 33444554433
No 125
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.16 E-value=0.00014 Score=82.11 Aligned_cols=143 Identities=20% Similarity=0.154 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 000292 759 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 838 (1713)
Q Consensus 759 ~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~ 838 (1713)
.+..++..|..++..|+|.+|+..|++.+..+ +.++....+.+.+|.+|+..|++++|+..+++-+... +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 45678899999999999999999999998764 5678888999999999999999999999999998763 7
Q ss_pred CChhHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhcCCCcHHH--------------HHHHHHHH
Q 000292 839 SHPNTAATYINVAMMEEGLG-----------NVHVALRYLHKALKCNQRLLGPDHIQT--------------AASYHAIA 893 (1713)
Q Consensus 839 dhP~~a~a~~NLA~iy~~lG-----------~~eeAle~lekALei~ek~~G~d~~~t--------------A~a~~nLA 893 (1713)
+|+....+++.+|.++..+. ...+|+..|+..++.+ +++... +.--+.+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999876542 2346777777666544 333322 23345678
Q ss_pred HHHHHcCChHHHHHHHHHHHHHH
Q 000292 894 IALSLMEAYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 894 ~ay~~lGd~eeAle~lekALeI~ 916 (1713)
..|...|.|..|+..++..++-+
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHC
Confidence 88889999999998888776543
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=0.00043 Score=84.95 Aligned_cols=132 Identities=18% Similarity=0.164 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000292 758 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 837 (1713)
Q Consensus 758 ~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G 837 (1713)
....+.+..|..++..|++++|+..++..+. ++|+........+.++...++.++|++.+++++.+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------ 369 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIA--------AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL------ 369 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------
Confidence 4456778888888999999999888887443 25666667777888889999999999999998875
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 838 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 838 ~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekAL 913 (1713)
.|.......++|.+|...|++.+|+..++..+.-. +.....|..||++|..+|+..+|...+.+.+
T Consensus 370 --~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 370 --DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND--------PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred --CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--------CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 24445567788999999999988888887766432 4445677888888888888887776555444
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.00018 Score=88.15 Aligned_cols=168 Identities=16% Similarity=0.103 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 798 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dh 798 (1713)
...|-.|..++..|++++|+..++..+.. +|.....+...+.++...++..+|++.+++++.. .
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------~ 370 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------D 370 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------C
Confidence 34566778888999999999999885543 5666778888999999999999999999999986 3
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000292 799 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 878 (1713)
Q Consensus 799 p~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~ 878 (1713)
|.......++|..|...|++.+|+.++++.+. +.|+....|..||..|..+|+..+|...
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A------------ 430 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLA------------ 430 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHH------------
Confidence 55567788999999999999999999988765 3466677888999999999987766543
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000292 879 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES 939 (1713)
Q Consensus 879 G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~q 939 (1713)
.|..|...|++++|+..+..|.+. .+.+.+....+-..+.++..
T Consensus 431 -------------~AE~~~~~G~~~~A~~~l~~A~~~----~~~~~~~~aR~dari~~~~~ 474 (484)
T COG4783 431 -------------RAEGYALAGRLEQAIIFLMRASQQ----VKLGFPDWARADARIDQLRQ 474 (484)
T ss_pred -------------HHHHHHhCCCHHHHHHHHHHHHHh----ccCCcHHHHHHHHHHHHHHH
Confidence 255667789999999998877644 44555555555555544444
No 128
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00015 Score=81.75 Aligned_cols=189 Identities=15% Similarity=0.031 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
+..+...+..|....+|++|...+.+|..-++..-. --..+.+|-..|++...+..+.++..+|+||..++.+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs--lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G--- 105 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS--LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG--- 105 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---
Confidence 444445556677788999999999999988776532 234578899999999999999999999999999998752
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
+|+++..-..-|-=....-+.++|+.+|++++.+.+.- .........+...+++|..+.+|++|-..+.+-..+..+.
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~ 183 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC 183 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH
Confidence 46666444444445557788999999999999998762 2223345677889999999999999998888776665444
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
-. .......+..+-.+|....||..|...++.+.+|
T Consensus 184 ~~--y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 184 DA--YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred hh--cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 21 1222233433344566667999999999987765
No 129
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.13 E-value=1.5e-05 Score=73.69 Aligned_cols=96 Identities=36% Similarity=0.529 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 000292 762 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 841 (1713)
Q Consensus 762 ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP 841 (1713)
+++.+|.+++.+|++++|+.++++++... +....++..+|.+|...+++++|++++++++.+. +.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-----PDN- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----Ccc-
Confidence 57889999999999999999999998762 2334778999999999999999999999998752 222
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000292 842 NTAATYINVAMMEEGLGNVHVALRYLHKALKC 873 (1713)
Q Consensus 842 ~~a~a~~NLA~iy~~lG~~eeAle~lekALei 873 (1713)
..++..+|.++...|+++.|..+++++++.
T Consensus 68 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 68 --AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred --hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 367889999999999999999999988765
No 130
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.13 E-value=0.00022 Score=83.44 Aligned_cols=144 Identities=16% Similarity=0.109 Sum_probs=111.5
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 755 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 834 (1713)
Q Consensus 755 dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~ 834 (1713)
..+.-+.-...||.-++..|++..|+..|..|++. +|....+++.-|.+|..+|+-.-|+.-+.+.|++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---
Confidence 34555667788999999999999999999999875 6788899999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC---cHH-----HHHHHHHHHHHHHHcCChHHHH
Q 000292 835 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD---HIQ-----TAASYHAIAIALSLMEAYPLSV 906 (1713)
Q Consensus 835 i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d---~~~-----tA~a~~nLA~ay~~lGd~eeAl 906 (1713)
.|+...+....|.++..+|++++|..-|...|...... |.. ... --..+.....-+...||+..|+
T Consensus 102 -----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 102 -----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred -----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 47778888899999999999999999999988753110 000 000 0111222333455678888898
Q ss_pred HHHHHHHHH
Q 000292 907 QHEQTTLQI 915 (1713)
Q Consensus 907 e~lekALeI 915 (1713)
++....++|
T Consensus 176 ~~i~~llEi 184 (504)
T KOG0624|consen 176 EMITHLLEI 184 (504)
T ss_pred HHHHHHHhc
Confidence 888877765
No 131
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.10 E-value=5.2e-05 Score=96.70 Aligned_cols=139 Identities=15% Similarity=0.053 Sum_probs=107.4
Q ss_pred CCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHH--------HHHH
Q 000292 713 CSSADGRQLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN--------QATI 781 (1713)
Q Consensus 713 ~~s~~A~~LlelA~~~l~qG~---~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~d--------eAle 781 (1713)
+....+..++..|..++.++. +..|+.+|++|+++ +|..+.+|..|+.+|.....+. .|..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 455578889999999887766 77899999999987 6777888888888776653332 2233
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000292 782 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 861 (1713)
Q Consensus 782 ~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~e 861 (1713)
..++++.+ ...+....+|.-+|..+...|++++|..++++|+++. |. +.+|..+|.++...|+++
T Consensus 406 ~~~~a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 406 ELDNIVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNR 470 (517)
T ss_pred HHHHhhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHH
Confidence 33333222 1133445788889999999999999999999999872 33 568999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000292 862 VALRYLHKALKCN 874 (1713)
Q Consensus 862 eAle~lekALei~ 874 (1713)
+|+++|++|+.+.
T Consensus 471 eA~~~~~~A~~L~ 483 (517)
T PRK10153 471 LAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999875
No 132
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.05 E-value=2.9e-05 Score=71.66 Aligned_cols=96 Identities=34% Similarity=0.471 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000292 720 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 799 (1713)
Q Consensus 720 ~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp 799 (1713)
.++.+|..++.+|++++|+.++++++... +....++..+|.++...|++++|+.++++++.+. +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 36778899999999999999999998762 2223678899999999999999999999998762 2
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 800 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 800 ~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
....++..+|.++...|++++|..++.+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 23377899999999999999999999998764
No 133
>PLN03077 Protein ECB2; Provisional
Probab=98.04 E-value=0.00069 Score=92.09 Aligned_cols=27 Identities=4% Similarity=-0.049 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000292 969 DLLDYINPSHDTKGRNVSTLKRKTYVA 995 (1713)
Q Consensus 969 elL~~LA~~y~~qGdyeEAl~yyeKAL 995 (1713)
..|..++.+|...|++++|....+...
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 457888999999999999977775544
No 134
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.03 E-value=1.8e-05 Score=73.01 Aligned_cols=65 Identities=29% Similarity=0.543 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 000292 759 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYL 831 (1713)
Q Consensus 759 ~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG-~~eeALe~yerALeL 831 (1713)
.+.+|..+|.+++.+|++++|+.+|.+|+.+ +|....+++++|.+|..+| ++++|++++++|+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3678999999999999999999999999997 5777889999999999999 799999999999986
No 135
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.03 E-value=0.0026 Score=81.44 Aligned_cols=148 Identities=21% Similarity=0.203 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHH
Q 000292 718 GRQLLESSKTAL-DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINER 792 (1713)
Q Consensus 718 A~~LlelA~~~l-~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~l----Gd~deAle~~~KAL~I~Er 792 (1713)
.-.++..++.+. ..+.+++++.|.++++..+....+ .....+|..+|.+|..+ ....+=..+.+++++.+++
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~---~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRS---HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhh---hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 334444444444 568899999999999997744432 33467888888887665 3345556677888888777
Q ss_pred hcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000292 793 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 872 (1713)
Q Consensus 793 ~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALe 872 (1713)
....+..+ ..+.++||..|..+++.+.|+.+.++++++- +.+ .+.++..||.++...+++.+|+....-|++
T Consensus 470 av~~d~~d-p~~if~lalq~A~~R~l~sAl~~~~eaL~l~----~~~---~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 470 AVQFDPTD-PLVIFYLALQYAEQRQLTSALDYAREALALN----RGD---SAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHhcCCCC-chHHHHHHHHHHHHHhHHHHHHHHHHHHHhc----CCc---cHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 75444333 3778899999999999999999999999872 223 356788899999999999999999999998
Q ss_pred HHHH
Q 000292 873 CNQR 876 (1713)
Q Consensus 873 i~ek 876 (1713)
-...
T Consensus 542 E~~~ 545 (799)
T KOG4162|consen 542 EFGD 545 (799)
T ss_pred Hhhh
Confidence 7633
No 136
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.0014 Score=83.19 Aligned_cols=150 Identities=19% Similarity=0.141 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---Hhc
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE---REL 794 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~E---r~l 794 (1713)
|..+|....-|--.+++-++...+.+|+++.+.. +....-..|++.|.-+...+|.+.|++||+|+-...- +.+
T Consensus 819 A~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~---DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL 895 (1416)
T KOG3617|consen 819 ALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETK---DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML 895 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhc---cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH
Confidence 3334433333333334444444455555554432 2233456899999999999999999999999622111 111
Q ss_pred CCCCchhHH----------HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh-----cCCC---------ChhHHHHHHHH
Q 000292 795 GLDHPDTMK----------SYGDLAVFYYRLQHTELALKYVKRALYLLHLT-----CGPS---------HPNTAATYINV 850 (1713)
Q Consensus 795 G~Dhp~ta~----------ay~nLA~vy~~lG~~eeALe~yerALeL~~~i-----~G~d---------hP~~a~a~~NL 850 (1713)
.+.|..+. .|.--|.++...|+.+.|+.+|..|-+.+..+ .|.- .-+ ..+.+.|
T Consensus 896 -~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd-~AAcYhl 973 (1416)
T KOG3617|consen 896 -KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD-KAACYHL 973 (1416)
T ss_pred -HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc-HHHHHHH
Confidence 12233232 34456889999999999999999998876542 2221 111 2356779
Q ss_pred HHHHHHCCCHHHHHHHHHHHHH
Q 000292 851 AMMEEGLGNVHVALRYLHKALK 872 (1713)
Q Consensus 851 A~iy~~lG~~eeAle~lekALe 872 (1713)
|..|...|++.+|+.+|.+|-.
T Consensus 974 aR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 974 ARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999876643
No 137
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.99 E-value=8.4e-05 Score=77.21 Aligned_cols=102 Identities=27% Similarity=0.235 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 000292 761 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 840 (1713)
Q Consensus 761 ~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dh 840 (1713)
.+.+.+|.++..+|+.++|+.+|++|+.. |.+.+....++..+|..|..+|++++|+..+++++.-+ ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46788999999999999999999999884 66777778999999999999999999999999987631 332
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000292 841 PNTAATYINVAMMEEGLGNVHVALRYLHKALK 872 (1713)
Q Consensus 841 P~~a~a~~NLA~iy~~lG~~eeAle~lekALe 872 (1713)
+....+...++.++...|++++|+.++-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33455566689999999999999999987774
No 138
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.99 E-value=0.00071 Score=84.54 Aligned_cols=228 Identities=15% Similarity=0.066 Sum_probs=161.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 000292 729 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 808 (1713)
Q Consensus 729 l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nL 808 (1713)
-..|..++-..++++|+... |..-..+...+..++..|+..+|...+.+|++. +|..-.++..-
T Consensus 561 k~hgt~Esl~Allqkav~~~--------pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaa 624 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQC--------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAA 624 (913)
T ss_pred HhcCcHHHHHHHHHHHHHhC--------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHH
Confidence 34588888888888888763 333446667788999999999999999999875 45555666666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 000292 809 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 888 (1713)
Q Consensus 809 A~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a 888 (1713)
-.+.+...+++.|..+|.+|... ..+..+|..-+.+...+++.++|+++++++|+.+ +..-..
T Consensus 625 vKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl 687 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKL 687 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHH
Confidence 67788899999999999999873 1235677778888889999999999999999887 445567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCCCchhhhhcCCcc
Q 000292 889 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ--QEAARNGTRKPDASIASKGHLS 966 (1713)
Q Consensus 889 ~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~--AeAl~~~~~~~~~a~a~~~~~s 966 (1713)
|..+|+++..+++.+.|...|...+..+ |...-..-.+. .+..+.+.. +.+.....+. ..+.
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~c-----P~~ipLWllLa---kleEk~~~~~rAR~ildrarl--------kNPk 751 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKKC-----PNSIPLWLLLA---KLEEKDGQLVRARSILDRARL--------KNPK 751 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhccccC-----CCCchHHHHHH---HHHHHhcchhhHHHHHHHHHh--------cCCC
Confidence 8889999999999999999887766432 44333322222 333333222 2222211111 1122
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhcCCC
Q 000292 967 VSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDN 1005 (1713)
Q Consensus 967 vaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~q~n 1005 (1713)
...+|...-....+.|+.++|-....+|++-+.+.+--+
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LW 790 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLW 790 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhH
Confidence 334455555566789999999999999999988876333
No 139
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.97 E-value=0.00011 Score=86.39 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=90.2
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000292 761 GAYSLLAVVL-YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 839 (1713)
Q Consensus 761 ~ay~~LA~vy-~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~d 839 (1713)
..++..|..+ +..|+|++|+..|++.+..+ ++++....+++.||.+|+..|++++|+.+|++++..+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 4555566655 55799999999999999874 5566677899999999999999999999999998863 67
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 840 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 840 hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
++....++..+|.+|..+|++++|+.+|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999999998776
No 140
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00044 Score=87.44 Aligned_cols=248 Identities=17% Similarity=0.136 Sum_probs=147.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000292 725 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 804 (1713)
Q Consensus 725 A~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~a 804 (1713)
|....+.|-+++|+.+|.+.-. |-.|-.+|..+|.+++|.+.. |. .|...+-..
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiA-------E~---~DRiHLr~T 860 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIA-------ET---KDRIHLRNT 860 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHH-------hh---ccceehhhh
Confidence 3445566777777777766532 233556677777777766543 32 344456688
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH----HHHHHHhcCCCChhH----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000292 805 YGDLAVFYYRLQHTELALKYVKRA----LYLLHLTCGPSHPNT----------AATYINVAMMEEGLGNVHVALRYLHKA 870 (1713)
Q Consensus 805 y~nLA~vy~~lG~~eeALe~yerA----LeL~~~i~G~dhP~~----------a~a~~NLA~iy~~lG~~eeAle~lekA 870 (1713)
|++.|..+...++.+.|++||+++ .++.+.. . +.|.. -..|...|..+...|+.+.|+.+|..|
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL-~-e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML-K-EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH-H-hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 999999999999999999999985 3333221 1 11211 134666788999999999999999998
Q ss_pred HHHHHHh-----cCCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh--cCCCCHH--------
Q 000292 871 LKCNQRL-----LGPD---------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK--LGPDDLR-------- 926 (1713)
Q Consensus 871 Lei~ek~-----~G~d---------~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~--LG~dh~~-------- 926 (1713)
-..+... .|.. +-+. .+.|.||+.|...|++.+|+.+|.+|-.....+ -.+++..
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~-AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal 1017 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDK-AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLAL 1017 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 8765432 1221 1122 346679999999999999999988765432221 0111110
Q ss_pred ------HHHH---HHHHH-------HHHHHHHHHHHHHHh--cCCCC---chhhhhcCCccHHHHHHHHHHHHHHCCCHH
Q 000292 927 ------TQDA---AAWLE-------YFESKAFEQQEAARN--GTRKP---DASIASKGHLSVSDLLDYINPSHDTKGRNV 985 (1713)
Q Consensus 927 ------t~ea---~~~La-------~L~qka~e~AeAl~~--~~~~~---~~a~a~~~~~svaelL~~LA~~y~~qGdye 985 (1713)
...+ +.-++ .++.+++-..+|+.. ..... +.-....+..+-..++...+..+....+|+
T Consensus 1018 ~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qye 1097 (1416)
T KOG3617|consen 1018 MSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYE 1097 (1416)
T ss_pred hcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHH
Confidence 0111 11111 122222222222221 11110 111112223355678889999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 000292 986 STLKRKTYVAKVKGNF 1001 (1713)
Q Consensus 986 EAl~yyeKALeL~dSl 1001 (1713)
+|...+-.+.++...+
T Consensus 1098 kAV~lL~~ar~~~~Al 1113 (1416)
T KOG3617|consen 1098 KAVNLLCLAREFSGAL 1113 (1416)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998876666655544
No 141
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00011 Score=88.67 Aligned_cols=108 Identities=18% Similarity=0.132 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM-------TAGAYSLLAVVLYHTGDFNQATIYQQKALD 788 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~-------~A~ay~~LA~vy~~lGd~deAle~~~KAL~ 788 (1713)
..|...-+.|..+++.|+|..|...|.+|+..+....+.+..+ ...|+.|||.+|..+++|.+|+..+.++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3466777889999999999999999999999876443332221 245788999999999999999999999988
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 789 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 789 I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
+ .+....+++.-|.+|..+|+|+.|+..|++|+++
T Consensus 286 ~--------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 286 L--------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred c--------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 6 4666889999999999999999999999999986
No 142
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.96 E-value=0.0018 Score=84.32 Aligned_cols=188 Identities=13% Similarity=0.054 Sum_probs=103.4
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHH
Q 000292 799 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK--CNQR 876 (1713)
Q Consensus 799 p~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALe--i~ek 876 (1713)
|.....+...|.+....|+.-+++..+....++..... .-+. ...+.+--......|++++.+...+++-. +...
T Consensus 881 P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g--ka~~-f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 881 PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG--KAKK-FQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc--ccch-hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 33344444555555555555555555554333321110 0111 22233344445556666666655544321 1112
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000292 877 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 956 (1713)
Q Consensus 877 ~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~ 956 (1713)
.+-..+++...+|...|.....++.++.|.+.+.+.+.+.+..+.......+.......++..+.++.+.......
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~---- 1033 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE---- 1033 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc----
Confidence 2224577888889999999999999999999999999999888766554443333333333334444322111110
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh
Q 000292 957 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1000 (1713)
Q Consensus 957 ~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dS 1000 (1713)
...+.+--........-+|+|+++++.|++++.+.++
T Consensus 1034 -------~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~s 1070 (1238)
T KOG1127|consen 1034 -------WMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNS 1070 (1238)
T ss_pred -------chhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhccc
Confidence 0112222222222225589999999999999998866
No 143
>PLN03077 Protein ECB2; Provisional
Probab=97.95 E-value=0.00067 Score=92.21 Aligned_cols=97 Identities=7% Similarity=-0.012 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCcc
Q 000292 887 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 966 (1713)
Q Consensus 887 ~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~s 966 (1713)
.+|..+...|...|+.++|++.|++..+ .-..++.......+.. +...+..+.+..+..... .......
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~---~g~~Pd~~T~~~ll~a--~~~~g~v~ea~~~f~~M~------~~~gi~P 623 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVE---SGVNPDEVTFISLLCA--CSRSGMVTQGLEYFHSME------EKYSITP 623 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCcccHHHHHHH--HhhcChHHHHHHHHHHHH------HHhCCCC
Confidence 4577778888888999988888876542 2334454322222211 222233333332222110 0000112
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000292 967 VSDLLDYINPSHDTKGRNVSTLKRKTYV 994 (1713)
Q Consensus 967 vaelL~~LA~~y~~qGdyeEAl~yyeKA 994 (1713)
-.+.|..+..+|.+.|++++|...+++.
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 2357889999999999999999998764
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.95 E-value=3.7e-05 Score=70.93 Aligned_cols=65 Identities=29% Similarity=0.492 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Q 000292 801 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKALKC 873 (1713)
Q Consensus 801 ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG-~~eeAle~lekALei 873 (1713)
.+..+.++|.+++..|+|++|+.+|.+|+++ +|....+++++|.+|..+| ++++|+.++++|+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999997 4666789999999999999 799999999999986
No 145
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=9.8e-05 Score=88.92 Aligned_cols=106 Identities=23% Similarity=0.264 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc-------hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000292 761 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP-------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 833 (1713)
Q Consensus 761 ~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp-------~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~ 833 (1713)
.....-|..|+..|+|..|...|++|+...+...+.+.. ....++.|||.||..+++|.+|+.++.++|++
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-- 286 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-- 286 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 344557899999999999999999999987654433322 13467899999999999999999999999986
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 834 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 834 ~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
.|....+++.-|.+|..+|+|+.|+..|++|+++.
T Consensus 287 ------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 287 ------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred ------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 24447889999999999999999999999999886
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.91 E-value=5.3e-05 Score=73.04 Aligned_cols=84 Identities=26% Similarity=0.316 Sum_probs=66.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 000292 730 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 809 (1713)
Q Consensus 730 ~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA 809 (1713)
++|++++|+.+++++++.... .+ ....++.||.+|+.+|+|++|+.++++ +.+. +....+...+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 478999999999999988421 22 455677799999999999999999998 4332 23456677889
Q ss_pred HHHHHcCChHHHHHHHHHH
Q 000292 810 VFYYRLQHTELALKYVKRA 828 (1713)
Q Consensus 810 ~vy~~lG~~eeALe~yerA 828 (1713)
.++..+|++++|+++|++|
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 147
>PRK11906 transcriptional regulator; Provisional
Probab=97.89 E-value=0.00045 Score=85.13 Aligned_cols=181 Identities=14% Similarity=0.051 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc---C------CHHHHHHHHHHHH
Q 000292 720 QLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---G------DFNQATIYQQKAL 787 (1713)
Q Consensus 720 ~LlelA~~~l~qG~---~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~l---G------d~deAle~~~KAL 787 (1713)
.++..|...+.++. .+.|+.+|.+|+... +.+|..+.+|..+|.+|+.. | +..+|.++.++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 66777888877765 456788888887331 23688899999999998775 1 2345556666666
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000292 788 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 867 (1713)
Q Consensus 788 ~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~l 867 (1713)
++ ++....++..+|.++...++++.|+..|++|+.+ .|+.+.+++..|+++...|+.++|++.+
T Consensus 332 el--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 54 3556788999999999999999999999999986 4778889999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000292 868 HKALKCNQRLLGPDHIQTAASYHAIAI-ALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 935 (1713)
Q Consensus 868 ekALei~ek~~G~d~~~tA~a~~nLA~-ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La 935 (1713)
++|+++.-. ..+.....+-. .| .....+.|+.+|-+ +.-.+.|....+....|.
T Consensus 396 ~~alrLsP~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 450 (458)
T PRK11906 396 DKSLQLEPR-------RRKAVVIKECVDMY-VPNPLKNNIKLYYK------ETESESHRVIIDNILKLK 450 (458)
T ss_pred HHHhccCch-------hhHHHHHHHHHHHH-cCCchhhhHHHHhh------ccccccchhhHHHHHHHH
Confidence 999987511 12222233333 33 34566777776533 222344554444443333
No 148
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.89 E-value=0.00017 Score=84.72 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=90.9
Q ss_pred HHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 802 MKSYGDLAVFY-YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 880 (1713)
Q Consensus 802 a~ay~nLA~vy-~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~ 880 (1713)
....++.|..+ ...|+|++|+..|++.+..+ ++++....+++.+|.+|...|++++|+.+|+++++.+ +
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P 211 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----P 211 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 35566777765 56799999999999998863 5566667889999999999999999999999999877 7
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 881 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 881 d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~ 916 (1713)
+++....+++.+|.+|..+|++++|...|++.++.+
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 788899999999999999999999999999887654
No 149
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.87 E-value=0.00012 Score=92.50 Aligned_cols=234 Identities=12% Similarity=0.074 Sum_probs=117.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000292 725 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 804 (1713)
Q Consensus 725 A~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~a 804 (1713)
|..++..|-..+|+..|++.- .+.....+|...|+..+|....++-++ .+.+...
T Consensus 405 aell~slGitksAl~I~Erle----------------mw~~vi~CY~~lg~~~kaeei~~q~le---------k~~d~~l 459 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERLE----------------MWDPVILCYLLLGQHGKAEEINRQELE---------KDPDPRL 459 (777)
T ss_pred HHHHHHcchHHHHHHHHHhHH----------------HHHHHHHHHHHhcccchHHHHHHHHhc---------CCCcchh
Confidence 455667777777776665531 233444555556666666655444332 1233444
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000292 805 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 884 (1713)
Q Consensus 805 y~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~ 884 (1713)
|..||.+.... .+|++|.++.... .+.+...+|......++|.+|.++++.++++. +.
T Consensus 460 yc~LGDv~~d~-------s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n--------pl 517 (777)
T KOG1128|consen 460 YCLLGDVLHDP-------SLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEIN--------PL 517 (777)
T ss_pred HHHhhhhccCh-------HHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhcC--------cc
Confidence 44444444433 3444444443221 12233334554555677777777777777664 33
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCC
Q 000292 885 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGH 964 (1713)
Q Consensus 885 tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~ 964 (1713)
...+|+.+|.++.+.++++.|.+.|..++. +.++|..... ++...+.+..+..++.+....+..- ...+
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvt-----L~Pd~~eaWn---Nls~ayi~~~~k~ra~~~l~EAlKc---n~~~ 586 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVT-----LEPDNAEAWN---NLSTAYIRLKKKKRAFRKLKEALKC---NYQH 586 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhh-----cCCCchhhhh---hhhHHHHHHhhhHHHHHHHHHHhhc---CCCC
Confidence 445666677777777777777777766663 3455533222 2221111112222222111100000 0111
Q ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhhccc
Q 000292 965 LSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRES 1021 (1713)
Q Consensus 965 ~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~q~n~ea~~eIa~LEikyet 1021 (1713)
.. ++.+--.+....|.+++|+..|.+.+.+.+.-. ..+.-..|......-.+
T Consensus 587 w~---iWENymlvsvdvge~eda~~A~~rll~~~~~~~--d~~vl~~iv~~~~~~~~ 638 (777)
T KOG1128|consen 587 WQ---IWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK--DDEVLLIIVRTVLEGMT 638 (777)
T ss_pred Ce---eeechhhhhhhcccHHHHHHHHHHHHHhhhhcc--cchhhHHHHHHHHhhcc
Confidence 11 233333344678999999999999888877654 33444444444444333
No 150
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.86 E-value=0.028 Score=70.99 Aligned_cols=201 Identities=16% Similarity=0.079 Sum_probs=128.2
Q ss_pred chHHHHhhhccchhhccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC
Q 000292 696 FRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD 775 (1713)
Q Consensus 696 F~~eDIlnl~PvvK~~~~~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd 775 (1713)
-+.+.+.++.|....- .....+...|..|...|+++.|...|++|+..- | +.-.+.+.+|...|..-....+
T Consensus 369 tyteAv~~vdP~ka~G----s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~---y-~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 369 TYTEAVKTVDPKKAVG----SPGTLWVEFAKLYENNGDLDDARVIFEKATKVP---Y-KTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred HHHHHHHccCcccCCC----ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC---c-cchHHHHHHHHHHHHHHHhhhh
Confidence 3444566666644322 235566777999999999999999999998751 1 1124568899999999999999
Q ss_pred HHHHHHHHHHHHHHHHH----hcCCCCchh------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000292 776 FNQATIYQQKALDINER----ELGLDHPDT------MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 845 (1713)
Q Consensus 776 ~deAle~~~KAL~I~Er----~lG~Dhp~t------a~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~ 845 (1713)
++.|+.+.++|+.+-.. .+...+|-. ...+..++.+....|-++.....|.+.+++.-. .| .
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-----TP---q 512 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-----TP---Q 512 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-----CH---H
Confidence 99999999999865322 112223322 234455677777778888888888888876422 23 4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 846 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 846 a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
+..|.|+.+....-+++|.+.|++.+.++.- +.-...-..|..-...-+.--..+.|..+|++|++.
T Consensus 513 ii~NyAmfLEeh~yfeesFk~YErgI~LFk~---p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 513 IIINYAMFLEEHKYFEESFKAYERGISLFKW---PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG 579 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcCCccCCC---ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 4567788888888888888888887776521 111111122222222212223456677777777653
No 151
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.00042 Score=79.87 Aligned_cols=162 Identities=19% Similarity=0.178 Sum_probs=118.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 000292 729 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 808 (1713)
Q Consensus 729 l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nL 808 (1713)
+...+|.+|++++..-.+ ..+..-..+..||.+|++..+|..|..+|.+.... +|........-
T Consensus 21 I~d~ry~DaI~~l~s~~E--------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELE--------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ 84 (459)
T ss_pred HHHhhHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence 455678888877765443 24555667889999999999999999999887554 67777666667
Q ss_pred HHHHHHcCChHHHHHHHHHH----------HHHHHHh-cCCC-----------Ch--hHHHHHHHHHHHHHHCCCHHHHH
Q 000292 809 AVFYYRLQHTELALKYVKRA----------LYLLHLT-CGPS-----------HP--NTAATYINVAMMEEGLGNVHVAL 864 (1713)
Q Consensus 809 A~vy~~lG~~eeALe~yerA----------LeL~~~i-~G~d-----------hP--~~a~a~~NLA~iy~~lG~~eeAl 864 (1713)
|..++..+.+..|+...... +.+...+ +..+ .| ..+.+.+|.|.++.+.|+|+.|.
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 77788888888887655433 3222211 1111 11 34677899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000292 865 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 914 (1713)
Q Consensus 865 e~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALe 914 (1713)
+-|+.|++.. |- .+ ..-+++|.++...|+++.|+++..+.++
T Consensus 165 qkFqaAlqvs----Gy-qp---llAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 165 QKFQAALQVS----GY-QP---LLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred HHHHHHHhhc----CC-Cc---hhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999864 22 22 3446789999999999999998876554
No 152
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.83 E-value=0.00026 Score=73.65 Aligned_cols=102 Identities=26% Similarity=0.209 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000292 803 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 882 (1713)
Q Consensus 803 ~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~ 882 (1713)
.+.+++|.++..+|+.++|+.+|++|+.. |.+.+....++..+|..|..+|++++|+..+++++.-. ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 35789999999999999999999999984 55566677899999999999999999999999998643 232
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000292 883 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 914 (1713)
Q Consensus 883 ~~tA~a~~nLA~ay~~lGd~eeAle~lekALe 914 (1713)
.........+|.++...|+.++|+..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22344445578899999999999998877663
No 153
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.81 E-value=0.0033 Score=66.24 Aligned_cols=173 Identities=27% Similarity=0.287 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
.......+..+...+.+..+...+..++.. .........+..++..+...+++..|+..+.+++....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 126 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP------ 126 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC------
Confidence 344555667778889999999999888764 12345677888899999999999999999888876421
Q ss_pred CchhHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000292 798 HPDTMKSYGDLAV-FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 876 (1713)
Q Consensus 798 hp~ta~ay~nLA~-vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek 876 (1713)
.. .......+. ++...|+++.|..+|.+++.+ .+........+..++..+...++++.|+..+.+++.....
T Consensus 127 ~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 127 DP--DLAEALLALGALYELGDYEEALELYEKALEL-----DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 11 222333344 899999999999999999552 1111234555666777788899999999999999987632
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 877 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 877 ~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~ 916 (1713)
. ....+..++..+...+++..|...+.+++...
T Consensus 200 ~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 200 D-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred c-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 1 34667788999999999999999998888654
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.78 E-value=0.00012 Score=70.55 Aligned_cols=84 Identities=23% Similarity=0.219 Sum_probs=65.3
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 000292 814 RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 893 (1713)
Q Consensus 814 ~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA 893 (1713)
.+|+|+.|+.+++++++... ..+ ....+.++|.+|...|+|++|+.++++ +... +....+.+.+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 36899999999999998742 122 455677799999999999999999998 4333 22355666779
Q ss_pred HHHHHcCChHHHHHHHHHH
Q 000292 894 IALSLMEAYPLSVQHEQTT 912 (1713)
Q Consensus 894 ~ay~~lGd~eeAle~lekA 912 (1713)
.++..+|++++|+.++++|
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 155
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0024 Score=73.01 Aligned_cols=156 Identities=15% Similarity=0.115 Sum_probs=113.7
Q ss_pred CCHHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 000292 732 GKLEDAVTYGTKALAKLVAV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 810 (1713)
Q Consensus 732 G~~eeAle~lqeAL~l~eqv-~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~ 810 (1713)
.+-++-++++.+.+.....- +| ++.-..|-.+..+....|+.+-|..++.+...- + |...+....-|.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g---~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~----f----p~S~RV~~lkam 94 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALG---DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR----F----PGSKRVGKLKAM 94 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccC---chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh----C----CCChhHHHHHHH
Confidence 35566777777776655433 33 344556777777778888888888777665432 2 344455566688
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 000292 811 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 890 (1713)
Q Consensus 811 vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~ 890 (1713)
.+...|++++|+++|...++ ++|....++-.--.+...+|+.-+|++.+.+-++.+ +.-..+++
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~ 158 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWH 158 (289)
T ss_pred HHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHH
Confidence 99999999999999999875 345545555555556677888889998888777765 23457899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 000292 891 AIAIALSLMEAYPLSVQHEQTTLQ 914 (1713)
Q Consensus 891 nLA~ay~~lGd~eeAle~lekALe 914 (1713)
.|+.+|...|+|++|.-++++.+-
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999999999999998873
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.77 E-value=0.00051 Score=87.83 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChH--------HHHHHHHHH
Q 000292 760 AGAYSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE--------LALKYVKRA 828 (1713)
Q Consensus 760 A~ay~~LA~vy~~lGd---~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~e--------eALe~yerA 828 (1713)
|.-++..|.-|...++ +.+|+.+|++|+++ +|+.+.+|..|+.+|.....+. .|.+...++
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4444555666655544 77899999999987 6888888888888886654332 233333333
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Q 000292 829 LYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 908 (1713)
Q Consensus 829 LeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~ 908 (1713)
+.+ +..+....++.-+|.++...|++++|...|++|+++. + .+.+|..+|.+|...|++++|+++
T Consensus 411 ~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-s~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 411 VAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------M-SWLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred hhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 221 1123334677778999999999999999999999885 2 256899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHH
Q 000292 909 EQTTLQILRAKLGPDDLR 926 (1713)
Q Consensus 909 lekALeI~kk~LG~dh~~ 926 (1713)
|++|+. +.+.++.
T Consensus 476 ~~~A~~-----L~P~~pt 488 (517)
T PRK10153 476 YSTAFN-----LRPGENT 488 (517)
T ss_pred HHHHHh-----cCCCCch
Confidence 999985 4566664
No 157
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0047 Score=75.48 Aligned_cols=251 Identities=13% Similarity=-0.024 Sum_probs=160.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCC--Chh----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--CCCc
Q 000292 728 ALDKGKLEDAVTYGTKALAKLVAVCGPY--HRM----TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG--LDHP 799 (1713)
Q Consensus 728 ~l~qG~~eeAle~lqeAL~l~eqv~G~d--hp~----~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG--~Dhp 799 (1713)
-+..|-|++|.++-.+++...+++-..+ .+. ....+-++..+-..+|++.+|++-...+...+.+.-+ .-..
T Consensus 285 sm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~ 364 (629)
T KOG2300|consen 285 SMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRA 364 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 3467888999999999998877663222 111 1234556777888899999999999999999887644 1223
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000292 800 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 879 (1713)
Q Consensus 800 ~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G 879 (1713)
..+...+.+|.+...-+.|+.|...|..|.++.... .-.+.+-.|+|.+|...|+-+.- .++++.. |
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~----y~~ld~i----~ 431 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDL----YKALDLI----G 431 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHH----HHHHHhc----C
Confidence 456778889999999999999999999999875442 22466678999999998875533 2344432 3
Q ss_pred CC-------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000292 880 PD-------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT 952 (1713)
Q Consensus 880 ~d-------~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~ 952 (1713)
+. +...+.+++..|...+.++++.+|...+++.+++.... ....-+...+..|..+....+...++.....
T Consensus 432 p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 432 PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccc
Confidence 22 12235567777888889999999999999999987321 1122334444445554444433333332222
Q ss_pred CCCchhhhhcCCccHHHHHHHHHHHHHHCCC--HHHHHHHHHH
Q 000292 953 RKPDASIASKGHLSVSDLLDYINPSHDTKGR--NVSTLKRKTY 993 (1713)
Q Consensus 953 ~~~~~a~a~~~~~svaelL~~LA~~y~~qGd--yeEAl~yyeK 993 (1713)
.....+....++.-..-....+..+|.+.|+ -+.+.+.|.+
T Consensus 510 pamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 510 PAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred hHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 1122222223333333334455666777777 4555555544
No 158
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.74 E-value=0.0067 Score=73.17 Aligned_cols=245 Identities=18% Similarity=0.069 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
.+......|...+..|+|.+|+.+..++-+. ++.-..+|..-+.+-.++|+++.|-.|..++-+..
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------ 148 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA------ 148 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC------
Confidence 3666677788888999999999999886443 23334567777889999999999999998886541
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC--- 873 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei--- 873 (1713)
...+...+...+.+...+|++..|..-..++++. ++.|+.. +.-...+|...|+|.+.+.++.+.-+-
T Consensus 149 -~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~-----~pr~~~v---lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l 219 (400)
T COG3071 149 -GDDTLAVELTRARLLLNRRDYPAARENVDQLLEM-----TPRHPEV---LRLALRAYIRLGAWQALLAILPKLRKAGLL 219 (400)
T ss_pred -CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----CcCChHH---HHHHHHHHHHhccHHHHHHHHHHHHHccCC
Confidence 1235667888999999999999999999988875 4556554 444678889999998888776533221
Q ss_pred ----------------HHHhcC-CCcHH--------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 000292 874 ----------------NQRLLG-PDHIQ--------------TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 922 (1713)
Q Consensus 874 ----------------~ek~~G-~d~~~--------------tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~ 922 (1713)
..+... .+... .......++.-+..+|++++|.+..++++.- ...
T Consensus 220 ~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~---~~D- 295 (400)
T COG3071 220 SDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR---QWD- 295 (400)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh---ccC-
Confidence 001000 00000 0122334577778889999999888877742 211
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh
Q 000292 923 DDLRTQDAAAWLEYFESKAFE-QQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1001 (1713)
Q Consensus 923 dh~~t~ea~~~La~L~qka~e-~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl 1001 (1713)
+. ....+..+.-.... ..+++.. ....+..-..++..||..|...+.+.+|..+++.+++...+.
T Consensus 296 --~~---L~~~~~~l~~~d~~~l~k~~e~---------~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 296 --PR---LCRLIPRLRPGDPEPLIKAAEK---------WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA 361 (400)
T ss_pred --hh---HHHHHhhcCCCCchHHHHHHHH---------HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence 11 11111111111000 0111100 111112222577888888888888888888888888777665
Q ss_pred c
Q 000292 1002 Y 1002 (1713)
Q Consensus 1002 ~ 1002 (1713)
.
T Consensus 362 ~ 362 (400)
T COG3071 362 S 362 (400)
T ss_pred h
Confidence 5
No 159
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.69 E-value=0.0012 Score=68.42 Aligned_cols=102 Identities=24% Similarity=0.220 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
...+-..|..+...|+++.|++.|.++|.+ .|..+.+|++.+..|..+|+.++|+.-+.+|+.+. |..
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~ 110 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQ 110 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Ccc
Confidence 455666688888999999999999999998 46778999999999999999999999999999985 444
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
......+|..-|.+|..+|+-+.|..-|..|-.+
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 4455689999999999999999999999999876
No 160
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.015 Score=66.70 Aligned_cols=160 Identities=18% Similarity=0.129 Sum_probs=116.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000292 725 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 804 (1713)
Q Consensus 725 A~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~a 804 (1713)
..+.+..|+.+.|..++.+....+ |..-++...-|+.+-.+|.+++|+++|...+. |+|....+
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~ 122 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--------DDPTDTVI 122 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--------cCcchhHH
Confidence 456678899998988887755543 22234455568888889999999998877654 34554555
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000292 805 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 884 (1713)
Q Consensus 805 y~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~ 884 (1713)
|-.--.+...+|+.-+|++.+..-++.+ +....++..++.+|...|+|++|.-+|++.+=+. |.
T Consensus 123 ~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~--------P~ 186 (289)
T KOG3060|consen 123 RKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ--------PF 186 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC--------CC
Confidence 5554456677888889998888777764 2235778899999999999999999999988653 33
Q ss_pred HHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHH
Q 000292 885 TAASYHAIAIALSLME---AYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 885 tA~a~~nLA~ay~~lG---d~eeAle~lekALeI~ 916 (1713)
....+..+|.+++-+| ++..|..||.+|+++.
T Consensus 187 n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 187 NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 4445566677776655 5678999999999774
No 161
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.65 E-value=0.0019 Score=81.25 Aligned_cols=170 Identities=19% Similarity=0.203 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
++.+-..|..+...|+-++|..+...++.. ++..-.||+.+|.++....+|++|+.+|+.|+.+
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-------- 104 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-------- 104 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------
Confidence 344455677888899999999999888863 3344569999999999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
.++...++..|+.+..++++|+.....-.+.+++ .|..-..|..+|..+...|++..|...++.-.......
T Consensus 105 ~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 105 EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4566889999999999999999888777777665 34445678889999999999999999988877666422
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 911 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lek 911 (1713)
..........+......++...|.+++|++++.+
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 2222222334444556777888888888887654
No 162
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0011 Score=77.92 Aligned_cols=159 Identities=16% Similarity=0.112 Sum_probs=103.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 000292 728 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 807 (1713)
Q Consensus 728 ~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~n 807 (1713)
++...+|..|+.+++-.+.. + ..+-...-..+|.+|+++|+|++|+..|.-+.. .+++ -+....+
T Consensus 32 fls~rDytGAislLefk~~~-----~--~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-------~~~~-~~el~vn 96 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNL-----D--REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-------KDDA-PAELGVN 96 (557)
T ss_pred HHhcccchhHHHHHHHhhcc-----c--hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-------cCCC-Ccccchh
Confidence 34667899999988877644 2 222234556699999999999999998876654 1222 2456789
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH----------HHHHhcCCC------C---hhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000292 808 LAVFYYRLQHTELALKYVKRALY----------LLHLTCGPS------H---PNTAATYINVAMMEEGLGNVHVALRYLH 868 (1713)
Q Consensus 808 LA~vy~~lG~~eeALe~yerALe----------L~~~i~G~d------h---P~~a~a~~NLA~iy~~lG~~eeAle~le 868 (1713)
||.|++.+|+|.+|.....+|-+ +..+ ++.. | .++..-...||.+....-.|++|++.|.
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahk-lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHK-LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987766521 1111 1111 1 1122233445666666666667776666
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000292 869 KALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 910 (1713)
Q Consensus 869 kALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~le 910 (1713)
+.|.- .+.....-.++|.+|..+.-|+-+.+.+.
T Consensus 176 rvL~d--------n~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 176 RVLQD--------NPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HHHhc--------ChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 66543 34455555668889999888887766544
No 163
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.62 E-value=0.0028 Score=70.77 Aligned_cols=204 Identities=12% Similarity=0.021 Sum_probs=133.8
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 756 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 835 (1713)
Q Consensus 756 hp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i 835 (1713)
..+.|..++..|..|-..|-+.-|.--+.+++.+ .|....+++.||..+...|+|+.|.+.|.-.+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 4566788888999999999999999999999987 5788999999999999999999999999999886
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH-HHH
Q 000292 836 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT-TLQ 914 (1713)
Q Consensus 836 ~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lek-ALe 914 (1713)
+|..-.+..|.|..+.--|+++.|.+-+.+-... .+..|..+..++ +-...-+..+|...+.+ +..
T Consensus 129 ----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWLY----l~E~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 129 ----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWLY----LNEQKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred ----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHHH----HHHhhCCHHHHHHHHHHHHHh
Confidence 4555667788899999999999998866543322 133444332221 11233455666654432 222
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000292 915 ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 994 (1713)
Q Consensus 915 I~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKA 994 (1713)
.-+...| +.-...+|+.+..+..-. ++..... +.+.-. ..+.+.|+++|+.|...|+..+|...|+-+
T Consensus 196 ~d~e~WG-----~~iV~~yLgkiS~e~l~~--~~~a~a~--~n~~~A---e~LTEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 196 SDKEQWG-----WNIVEFYLGKISEETLME--RLKADAT--DNTSLA---EHLTETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred ccHhhhh-----HHHHHHHHhhccHHHHHH--HHHhhcc--chHHHH---HHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2112222 112222333332221111 1111111 111111 146789999999999999999999999877
Q ss_pred HH
Q 000292 995 AK 996 (1713)
Q Consensus 995 Le 996 (1713)
+.
T Consensus 264 ia 265 (297)
T COG4785 264 VA 265 (297)
T ss_pred HH
Confidence 65
No 164
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.61 E-value=0.007 Score=69.94 Aligned_cols=174 Identities=18% Similarity=0.208 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
+..|++.|...++.|++++|..+|+.....+ +..+..-.+...++.+++..+++++|+.+..+-+..+ +.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CC
Confidence 6789999999999999999999998876432 3344556788889999999999999999999988874 67
Q ss_pred CchhHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHHHhcCCCChhH--------------HHHHHHHHHHHHHCC
Q 000292 798 HPDTMKSYGDLAVFYYRLQ-----HTELALKYVKRALYLLHLTCGPSHPNT--------------AATYINVAMMEEGLG 858 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG-----~~eeALe~yerALeL~~~i~G~dhP~~--------------a~a~~NLA~iy~~lG 858 (1713)
|++...+++..|++++..= +...+...+...-++.... |+.+.. +.--..+|..|.+.|
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999998876542 2333333333332332221 222211 222345788999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Q 000292 859 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 908 (1713)
Q Consensus 859 ~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~ 908 (1713)
.+..|+..+++.++-+ ++...+-.++..|..+|..+|-.++|...
T Consensus 182 ~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 182 AYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred ChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 9999999999998876 34456677888899999999999988663
No 165
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.59 E-value=0.0015 Score=83.45 Aligned_cols=145 Identities=16% Similarity=0.022 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 000292 759 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 838 (1713)
Q Consensus 759 ~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~ 838 (1713)
...+++.||..|...|++++|+.+..+||.. .|.....|..-|.+|-..|++.+|.+++..|..+-
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD------ 258 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD------ 258 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC------
Confidence 3578899999999999999999999999985 57788999999999999999999999999998751
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 839 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH---IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 839 dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~---~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
..--.+-+..+..+.+.|+.++|...+..-.+--. .+... .+........|.+|.++|++..|+..|.....+
T Consensus 259 --~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 259 --LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV--DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred --hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC--CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11122334466777889999998876543221110 00111 122333456799999999999999999999999
Q ss_pred HHHhcC
Q 000292 916 LRAKLG 921 (1713)
Q Consensus 916 ~kk~LG 921 (1713)
+.....
T Consensus 335 f~~~~~ 340 (517)
T PF12569_consen 335 FDDFEE 340 (517)
T ss_pred HHHHhc
Confidence 987643
No 166
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.00044 Score=80.14 Aligned_cols=105 Identities=20% Similarity=0.235 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
++..+|+.|..++..|+|..|...|+.-+..+ +.....+.++++||.+++.+|+|+.|...|..++.-+ +
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P 209 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----P 209 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----C
Confidence 45668999999999999999999999888763 6677889999999999999999999999999998753 6
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
+++....+++.||.+..++|+.++|-..|++++.-
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999875
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.57 E-value=0.00021 Score=65.30 Aligned_cols=60 Identities=23% Similarity=0.475 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000292 722 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 789 (1713)
Q Consensus 722 lelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I 789 (1713)
+.+|..++.+|++++|+..|++++.. +|....+++.+|.+++.+|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999865 5788999999999999999999999999999976
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00026 Score=64.69 Aligned_cols=60 Identities=33% Similarity=0.464 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 764 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 764 ~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
+.+|..++..|++++|+..|++++.. +|....++..+|.++..+|++++|+.+|++++++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999864 5888999999999999999999999999999986
No 169
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.50 E-value=0.013 Score=69.58 Aligned_cols=142 Identities=20% Similarity=0.168 Sum_probs=98.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh--cCCCCch----
Q 000292 728 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERE--LGLDHPD---- 800 (1713)
Q Consensus 728 ~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lG-d~deAle~~~KAL~I~Er~--lG~Dhp~---- 800 (1713)
.+.+|+++.|..++.++-.+............+..++++|.-.+..+ ++++|..++++|+++.+.. ....+++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999999887642222233456889999999999999 9999999999999997651 1223333
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 801 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 801 ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
...++..|+.+|...+.++...+ ..+++...+.-++ ++|.+... .+-.+ ...++.+++.+.+.+++.-.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~L--~l~il-~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFLL--KLEIL-LKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHHH--HHHHH-hccCChhHHHHHHHHHHHhc
Confidence 35678889999999988865444 4444444444443 45554322 22222 22778888888887777643
No 170
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.46 E-value=0.0039 Score=64.81 Aligned_cols=101 Identities=23% Similarity=0.267 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 000292 762 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 841 (1713)
Q Consensus 762 ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP 841 (1713)
.+-.-|..+...|+.+.|++.|.+||.++ |..+.+|+|-|..|..+|+.++|++-+++|+++. |+...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~tr 112 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTR 112 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccch
Confidence 34445677788899999999999999984 6678899999999999999999999999999985 44444
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 842 NTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 842 ~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
....++..-|.+|..+|+.+.|..-|+.|-++-
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 556788999999999999999999999988763
No 171
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.0063 Score=74.44 Aligned_cols=200 Identities=17% Similarity=0.090 Sum_probs=149.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 000292 726 KTALDKGKLEDAVTYGTKALAKLVAVCGP--YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 803 (1713)
Q Consensus 726 ~~~l~qG~~eeAle~lqeAL~l~eqv~G~--dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ 803 (1713)
-.-+-.|++.+|++....+.+.+.+.-++ .....+...+.+|.-....+.|+.|...|..|+...+.. .-.+.
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~ 405 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAF 405 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHH
Confidence 34456899999999999999988766442 112346677788988889999999999999999876542 22456
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000292 804 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 876 (1713)
Q Consensus 804 ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~d-------hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek 876 (1713)
+-.|||..|.+.++-+. +.++++.. ++. +...+.+++-.|.....++++.+|..++.+.|++...
T Consensus 406 ~nlnlAi~YL~~~~~ed----~y~~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana 477 (629)
T KOG2300|consen 406 CNLNLAISYLRIGDAED----LYKALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA 477 (629)
T ss_pred HHHhHHHHHHHhccHHH----HHHHHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch
Confidence 67789999999877543 34445432 333 2234567788888889999999999999999998732
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 000292 877 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF 942 (1713)
Q Consensus 877 ~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~ 942 (1713)
. ....-++..+..|+.+....|+..++....+-+++..++. +|++..+.....+..+.+..+
T Consensus 478 e--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g 539 (629)
T KOG2300|consen 478 E--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALG 539 (629)
T ss_pred h--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhC
Confidence 1 2234566778889999999999999999999999999876 778877777766666655443
No 172
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.45 E-value=0.00043 Score=85.16 Aligned_cols=72 Identities=22% Similarity=0.175 Sum_probs=65.1
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 873 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei 873 (1713)
..|....+++|||..|+.+|+|++|+.+|++||++ .+++.....+|+|+|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36788999999999999999999999999999997 4566555567999999999999999999999999997
No 173
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.45 E-value=0.0058 Score=81.98 Aligned_cols=164 Identities=15% Similarity=0.037 Sum_probs=121.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000292 725 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 804 (1713)
Q Consensus 725 A~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~a 804 (1713)
-..+++.+++++|.+.+++||....-.-+..-..+..+|.||=..| |.-+.-.+.|++|.+++. ....
T Consensus 1465 Maf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd---------~~~V 1532 (1710)
T KOG1070|consen 1465 MAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD---------AYTV 1532 (1710)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc---------hHHH
Confidence 3566788999999999999998642111111223445555555544 455566678888887642 3467
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000292 805 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 884 (1713)
Q Consensus 805 y~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~ 884 (1713)
|..|.-+|..-+++++|.++|++.++-+. ....+|..+|..+..+.+-+.|...+++||....+ ..|.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk---~eHv- 1600 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK---QEHV- 1600 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch---hhhH-
Confidence 89999999999999999999999887653 23567888999999999999999999999998744 2343
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000292 885 TAASYHAIAIALSLMEAYPLSVQHEQTTLQ 914 (1713)
Q Consensus 885 tA~a~~nLA~ay~~lGd~eeAle~lekALe 914 (1713)
......|++-+..||-+.+...|+..+.
T Consensus 1601 --~~IskfAqLEFk~GDaeRGRtlfEgll~ 1628 (1710)
T KOG1070|consen 1601 --EFISKFAQLEFKYGDAERGRTLFEGLLS 1628 (1710)
T ss_pred --HHHHHHHHHHhhcCCchhhHHHHHHHHh
Confidence 4455669999999999998888776653
No 174
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.44 E-value=0.014 Score=73.31 Aligned_cols=281 Identities=17% Similarity=0.128 Sum_probs=145.8
Q ss_pred hccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000292 710 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTK------ALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ 783 (1713)
Q Consensus 710 ~~~~~s~~A~~LlelA~~~l~qG~~eeAle~lqe------AL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~ 783 (1713)
|+....-.+..+-..|.++-...++++|+++|++ |+++.+-.+ ...+...-...|.-+.+.|+++.|+.+|
T Consensus 653 ~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhf 729 (1636)
T KOG3616|consen 653 HIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHF 729 (1636)
T ss_pred HHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHH
Confidence 3333333344444445666677788888888765 334333222 2233344445677778888888888776
Q ss_pred HHHHHHH---HHhcC--------------CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHH------HH----------
Q 000292 784 QKALDIN---ERELG--------------LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRA------LY---------- 830 (1713)
Q Consensus 784 ~KAL~I~---Er~lG--------------~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerA------Le---------- 830 (1713)
-+|-.+. +..+| .|.......|..+|.-|...|+|+.|.++|-++ +.
T Consensus 730 iea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 730 IEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHH
Confidence 5442221 11111 111122244566788888888888888776543 22
Q ss_pred ---HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHHHh---------cCCCcHH-HHHHHHH
Q 000292 831 ---LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL------HKALKCNQRL---------LGPDHIQ-TAASYHA 891 (1713)
Q Consensus 831 ---L~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~l------ekALei~ek~---------~G~d~~~-tA~a~~n 891 (1713)
+..+..|+ ..+...|..-|.-+...|+|.+|.++| .+|+.++.+. .+..|+. ...+...
T Consensus 810 a~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 810 AFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKH 887 (1636)
T ss_pred HHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHH
Confidence 23333333 234556666677777788887777766 3555554332 1111221 2244556
Q ss_pred HHHHHHHcCChHHHHHHHHH-------------------HHHHHHHhcCCCCHHHHHHHHHHHH--------HHHHHHHH
Q 000292 892 IAIALSLMEAYPLSVQHEQT-------------------TLQILRAKLGPDDLRTQDAAAWLEY--------FESKAFEQ 944 (1713)
Q Consensus 892 LA~ay~~lGd~eeAle~lek-------------------ALeI~kk~LG~dh~~t~ea~~~La~--------L~qka~e~ 944 (1713)
+|.-|...|+...|..+|.+ |+.|.+..-|.+-.. .-+..|... +..+.+-.
T Consensus 888 f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k-~v~flwaksiggdaavkllnk~gll 966 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEK-HVAFLWAKSIGGDAAVKLLNKHGLL 966 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHH-HHHHHHHHhhCcHHHHHHHHhhhhH
Confidence 77777777777777665543 445555444443211 112222211 11111111
Q ss_pred HHHHH----hcCCCC--c-hhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 945 QEAAR----NGTRKP--D-ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 998 (1713)
Q Consensus 945 AeAl~----~~~~~~--~-~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~ 998 (1713)
..+.. ...-.. + ..+..++ ...++...++..+...|++++|-+.|-.++++.
T Consensus 967 ~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 967 EAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 11110 000000 0 0111111 223355667777788999999999998888764
No 175
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.40 E-value=0.03 Score=67.79 Aligned_cols=239 Identities=15% Similarity=0.054 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
.-.++--+...-+.|+++.|-.|+.++-+.. .+ .....+...+.+...+|+++.|..-..+++.+
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~~-~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~-------- 182 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELA------GD-DTLAVELTRARLLLNRRDYPAARENVDQLLEM-------- 182 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhccC------CC-chHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------
Confidence 3345556788889999999999998887652 12 23456777889999999999999988888876
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------------------HHHhcC------------------CCC
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL-------------------LHLTCG------------------PSH 840 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL-------------------~~~i~G------------------~dh 840 (1713)
+|.....+.-...+|...|+|...+.++.+..+- +++... .++
T Consensus 183 ~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~ 262 (400)
T COG3071 183 TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRND 262 (400)
T ss_pred CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcC
Confidence 3444556666778888888888877665443210 011000 112
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000292 841 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 920 (1713)
Q Consensus 841 P~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~L 920 (1713)
|. +...++.-+...|++++|.++.+++|+... + +. .+..++. ..-++...=++..++.++-
T Consensus 263 p~---l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~-----D-~~---L~~~~~~--l~~~d~~~l~k~~e~~l~~----- 323 (400)
T COG3071 263 PE---LVVAYAERLIRLGDHDEAQEIIEDALKRQW-----D-PR---LCRLIPR--LRPGDPEPLIKAAEKWLKQ----- 323 (400)
T ss_pred hh---HHHHHHHHHHHcCChHHHHHHHHHHHHhcc-----C-hh---HHHHHhh--cCCCCchHHHHHHHHHHHh-----
Confidence 32 334467778899999999999999987541 1 11 1111121 1345555555555555422
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh
Q 000292 921 GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1000 (1713)
Q Consensus 921 G~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dS 1000 (1713)
.++++.. ...|++++.+.....+|-.... .++.. ..-+..+..+|.++.++|+..+|-+.++.++.+..+
T Consensus 324 h~~~p~L---~~tLG~L~~k~~~w~kA~~~le----aAl~~---~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 324 HPEDPLL---LSTLGRLALKNKLWGKASEALE----AALKL---RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred CCCChhH---HHHHHHHHHHhhHHHHHHHHHH----HHHhc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 2455533 3444444333222222211111 01111 123446889999999999999999999999955443
No 176
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.012 Score=66.67 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=95.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000292 766 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 845 (1713)
Q Consensus 766 LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~ 845 (1713)
-|..|....++..|=..|.+|-.+..+. | +..+.+.+|...+.+|... +..+|..++++|++|+.... . -...+.
T Consensus 40 Aan~yklaK~w~~AG~aflkaA~~h~k~-~-skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~G-r-f~~aAk 114 (288)
T KOG1586|consen 40 AANMYKLAKNWSAAGDAFLKAADLHLKA-G-SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMG-R-FTMAAK 114 (288)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhh-H-HHHHHh
Confidence 3444444555666666666666655443 2 3345677788888877655 99999999999999987642 1 122345
Q ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 846 TYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQT-AASYHAIAIALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 846 a~~NLA~iy~~l-G~~eeAle~lekALei~ek~~G~d~~~t-A~a~~nLA~ay~~lGd~eeAle~lekAL 913 (1713)
-+..||.+|..- .++++|+.+|++|-+.+.. ...... -.++...|..-..+++|.+|+..|++..
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888755 8999999999999988732 222222 2456667777778888888888877543
No 177
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.028 Score=66.54 Aligned_cols=129 Identities=23% Similarity=0.206 Sum_probs=87.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------HHH
Q 000292 722 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD----------INE 791 (1713)
Q Consensus 722 lelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~----------I~E 791 (1713)
+..|..++..|+|++|+..|.-+... + ...+....+||.+++.+|.|.+|.....+|-. +.-
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~-------~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlah 132 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNK-------D-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAH 132 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhcc-------C-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 34578888999999999999766542 1 12356778899999999999999987766511 111
Q ss_pred HhcCCCCc----------hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000292 792 RELGLDHP----------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 861 (1713)
Q Consensus 792 r~lG~Dhp----------~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~e 861 (1713)
+. + |.. ++..-...||.+.+..-.|.+|++.|++.|. +.|+...+-.++|.+|.++.-|+
T Consensus 133 kl-n-dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 133 KL-N-DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYD 202 (557)
T ss_pred Hh-C-cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhh
Confidence 11 1 111 1223334567777777778888888887764 45666666677888888887777
Q ss_pred HHHHHHH
Q 000292 862 VALRYLH 868 (1713)
Q Consensus 862 eAle~le 868 (1713)
-+.+.+.
T Consensus 203 vsqevl~ 209 (557)
T KOG3785|consen 203 VSQEVLK 209 (557)
T ss_pred hHHHHHH
Confidence 7666554
No 178
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.39 E-value=0.032 Score=73.11 Aligned_cols=264 Identities=14% Similarity=-0.033 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv-~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
+..+..|.....+.++++|..++.++......- .+......+...-.-|.+....|++++|+++.+.++...-. ..
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~ 492 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AA 492 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---cc
Confidence 334445667778899999999998887664331 01122234555566788899999999999999999876422 12
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
...-+.++..+|.+..-.|++++|+.+.+++.++.+.. + .......+....+.++..+|+ .|..-.+++.......
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-~-~~~l~~~~~~~~s~il~~qGq--~~~a~~~~~~~~~~~q 568 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH-D-VYHLALWSLLQQSEILEAQGQ--VARAEQEKAFNLIREQ 568 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-c-cHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHH
Confidence 22345788999999999999999999999999998774 2 223345566778999999993 3333333333333222
Q ss_pred cCCC---cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000292 878 LGPD---HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 954 (1713)
Q Consensus 878 ~G~d---~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~ 954 (1713)
.... |.....++..+..+|.+ ++.+..-...++.+........+... .....|+.+....++.+++.......
T Consensus 569 ~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~-~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 569 HLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSR-LALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred HhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2222 22233344444444443 66777666666665433322222111 11124554444444444433221111
Q ss_pred CchhhhhcCCccH-HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000292 955 PDASIASKGHLSV-SDLLDYINPSHDTKGRNVSTLKRKTY 993 (1713)
Q Consensus 955 ~~~a~a~~~~~sv-aelL~~LA~~y~~qGdyeEAl~yyeK 993 (1713)
.........+... +.++.........+|++++|..+..+
T Consensus 645 ~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 645 ERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1111111122222 22222233333678999999888877
No 179
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.35 E-value=0.00057 Score=84.16 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=63.2
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 756 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 756 hp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
.|..+.+++++|.+|+.+|+|++|+..|++||.+ .+++.....+|+|+|.+|..+|++++|+.+|++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5677889999999999999999999999999997 3444444467999999999999999999999999986
No 180
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.35 E-value=0.00029 Score=58.19 Aligned_cols=42 Identities=31% Similarity=0.406 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh
Q 000292 801 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 842 (1713)
Q Consensus 801 ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~ 842 (1713)
++.++.+||.+|..+|++++|+.++++++.+.+.++|++||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 367899999999999999999999999999999999999985
No 181
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.017 Score=65.56 Aligned_cols=178 Identities=15% Similarity=0.036 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000292 720 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 799 (1713)
Q Consensus 720 ~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp 799 (1713)
.+...|..|....++..|=..|.+|-.+..+. |.. -+.+.+|...+.+|.. ++..+|+..+++|+.|+... |. -.
T Consensus 36 l~~~Aan~yklaK~w~~AG~aflkaA~~h~k~-~sk-hDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~-Gr-f~ 110 (288)
T KOG1586|consen 36 LYERAANMYKLAKNWSAAGDAFLKAADLHLKA-GSK-HDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDM-GR-FT 110 (288)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCc-hhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhh-hH-HH
Confidence 33344566666778889999999998887665 322 3467777777776655 49999999999999998764 21 12
Q ss_pred hhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000292 800 DTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 878 (1713)
Q Consensus 800 ~ta~ay~nLA~vy~~l-G~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~ 878 (1713)
..+..+..||.+|..- .++++|+.+|++|-+.++.- ......-.++...|..-..+++|.+|+..|++..+...
T Consensus 111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~--- 185 (288)
T KOG1586|consen 111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL--- 185 (288)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 2345677899998766 89999999999999987531 11122335566677777788999999999988766431
Q ss_pred CCCcHH-HH-HHHHHHHHHHHHcCChHHHHH
Q 000292 879 GPDHIQ-TA-ASYHAIAIALSLMEAYPLSVQ 907 (1713)
Q Consensus 879 G~d~~~-tA-~a~~nLA~ay~~lGd~eeAle 907 (1713)
+..-.. .+ .-++.-|.++....|.-.|..
T Consensus 186 ~n~LLKys~KdyflkAgLChl~~~D~v~a~~ 216 (288)
T KOG1586|consen 186 DNNLLKYSAKDYFLKAGLCHLCKADEVNAQR 216 (288)
T ss_pred cchHHHhHHHHHHHHHHHHhHhcccHHHHHH
Confidence 111111 11 223444556666566544433
No 182
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.33 E-value=0.0034 Score=77.60 Aligned_cols=116 Identities=24% Similarity=0.204 Sum_probs=95.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 000292 726 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 805 (1713)
Q Consensus 726 ~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay 805 (1713)
..+...++++.|++++++.... +|+ +...|+.++..+++..+|+.++.+++.. .|.....+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL 237 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSELL 237 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 3344567888888888875543 344 3455899999999999999999999853 45557888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000292 806 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 868 (1713)
Q Consensus 806 ~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~le 868 (1713)
...|.++...++++.|+++.++|..+ .|....+|..||.+|..+|+++.|+..+.
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 88999999999999999999999986 47778899999999999999999997665
No 183
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.32 E-value=0.0034 Score=77.59 Aligned_cols=119 Identities=16% Similarity=0.117 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000292 765 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 844 (1713)
Q Consensus 765 ~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a 844 (1713)
.|-.++...++++.|+.++++.... +|+ ....||.+|...++-.+|++++++++.. .|...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCH
Confidence 3445556678888888888775432 344 3456899999999999999999999953 34447
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000292 845 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 910 (1713)
Q Consensus 845 ~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~le 910 (1713)
..+...|..+...++++.|+...++|..+. |....+|+.||.+|..+|+|+.|+..+.
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 788889999999999999999999999886 5667889999999999999999997665
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=97.31 E-value=0.0015 Score=71.06 Aligned_cols=101 Identities=12% Similarity=-0.030 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000292 714 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 793 (1713)
Q Consensus 714 ~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~ 793 (1713)
.......++..|..++++|++++|..+|+-..-+ + +.....+..||.++..+++|++|+..|-.|..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----D---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 4556788888999999999999999999754432 2 3335568899999999999999999999988763
Q ss_pred cCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000292 794 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 830 (1713)
Q Consensus 794 lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALe 830 (1713)
.++| ..++.+|.||..+|+.+.|+.+|+.++.
T Consensus 102 --~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 --KNDY---RPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --cCCC---CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3333 3478899999999999999999999987
No 185
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.0024 Score=74.16 Aligned_cols=102 Identities=22% Similarity=0.185 Sum_probs=92.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh
Q 000292 763 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 842 (1713)
Q Consensus 763 y~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~ 842 (1713)
+++.|.-++..|+|..|...|+.-+.-+ +++..+..+++.||.+++.+|+|+.|...|..+..- -+++|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence 7889999999999999999999988763 678889999999999999999999999999998874 367888
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 843 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 843 ~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
....++.||.+...+|+.++|...|++.++-+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 88999999999999999999999999988765
No 186
>PRK11906 transcriptional regulator; Provisional
Probab=97.29 E-value=0.0055 Score=75.87 Aligned_cols=145 Identities=12% Similarity=-0.000 Sum_probs=107.2
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHc---C------ChHHHHHHHHHHHHH
Q 000292 764 SLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL---Q------HTELALKYVKRALYL 831 (1713)
Q Consensus 764 ~~LA~vy~~lGd---~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~l---G------~~eeALe~yerALeL 831 (1713)
+..|.-....+. ...|+.++.+|+... .-+|+.+.+|..+|.|++.. | ...+|+++..+|+++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 445555544443 456777888888432 23688899999999998765 1 234566666666664
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000292 832 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 911 (1713)
Q Consensus 832 ~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lek 911 (1713)
+ +..+.++..+|.++...++++.|+.+|++|+.+. |..+.+++..|.++...|+.++|++++++
T Consensus 334 -----d---~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 334 -----T---TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred -----C---CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3 3345678889999999999999999999999886 67788999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Q 000292 912 TLQILRAKLGPDDLRTQDAAAWL 934 (1713)
Q Consensus 912 ALeI~kk~LG~dh~~t~ea~~~L 934 (1713)
|+++ .|......-...|+
T Consensus 398 alrL-----sP~~~~~~~~~~~~ 415 (458)
T PRK11906 398 SLQL-----EPRRRKAVVIKECV 415 (458)
T ss_pred Hhcc-----CchhhHHHHHHHHH
Confidence 9854 45444444445566
No 187
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.29 E-value=0.12 Score=68.08 Aligned_cols=190 Identities=14% Similarity=0.040 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
+...--.|.+...+|+++.|+++.+.++...-.. ....-+.++..+|.+..-.|++++|..+.+++.++..+.- .
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~ 532 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--V 532 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--c
Confidence 4444445788899999999999999999874322 2233467899999999999999999999999999987742 1
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS---HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~d---hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
......+.+..+.++..+|+...| -...+........... |.....++..+...|.. ++.+..-...++++.
T Consensus 533 ~~l~~~~~~~~s~il~~qGq~~~a--~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~ 607 (894)
T COG2909 533 YHLALWSLLQQSEILEAQGQVARA--EQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVG 607 (894)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhh
Confidence 233456777789999999943333 2333333222222222 32334445445555544 677776666666665
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 875 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 875 ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
... ..........++.||.++...|++++|...+.+....+..
T Consensus 608 ~~~-~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 608 SVY-TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred hhc-ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 332 2222233334468999999999999999999888777644
No 188
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.28 E-value=0.0037 Score=66.64 Aligned_cols=104 Identities=20% Similarity=0.317 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
...++..|...++.|+|.+|++.|+.....+ +..+....+...||.+|+..+++++|+..+++-+.+ .+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 5678899999999999999999998876653 334455678889999999999999999999999987 578
Q ss_pred CchhHHHHHHHHHHHHHcCC---------------hHHHHHHHHHHHHH
Q 000292 798 HPDTMKSYGDLAVFYYRLQH---------------TELALKYVKRALYL 831 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~---------------~eeALe~yerALeL 831 (1713)
|+..-.+++..|++++.+.. ...|+..|++.+..
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999876 66677777666654
No 189
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.27 E-value=0.00041 Score=57.33 Aligned_cols=42 Identities=43% Similarity=0.566 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 000292 759 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 800 (1713)
Q Consensus 759 ~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ 800 (1713)
++.++++||.+|..+|++++|+.++++++.+.++++|.+||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 367899999999999999999999999999999999999985
No 190
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.26 E-value=0.02 Score=60.38 Aligned_cols=173 Identities=26% Similarity=0.290 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV-VLYHTGDFNQATIYQQKALDINEREL 794 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~-vy~~lGd~deAle~~~KAL~I~Er~l 794 (1713)
.....++..+..+...+++..|+..+.+++.... .... .....+. ++...|+++.|..++.+++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---- 160 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDP------DPDL--AEALLALGALYELGDYEEALELYEKALELD---- 160 (291)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC------Ccch--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Confidence 3355566667777788888888888888776521 1112 2233444 8999999999999999995521
Q ss_pred CCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 795 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 795 G~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
.........+..++..+...++++.|+..+.+++...... ....+.+++..+...++++.|+..+.+++...
T Consensus 161 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 161 -PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred -CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 1012455667777777899999999999999999874321 45678889999999999999999999999876
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 875 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 875 ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~ 916 (1713)
.. ....+..++..+...+.++.|...+.+++...
T Consensus 233 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 233 PD--------NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cc--------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22 34556667777777778999999888887654
No 191
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.19 E-value=0.002 Score=76.89 Aligned_cols=169 Identities=14% Similarity=0.063 Sum_probs=113.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 000292 721 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 800 (1713)
Q Consensus 721 LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ 800 (1713)
.+-.|.++...|++++|+.++.+. ....+...+-.+|..+++++.|.+.+++.-.+ . .+
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~---eD 163 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----D---ED 163 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----S---CC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C---Cc
Confidence 344567777889999988887653 12345556778999999999999888775432 2 23
Q ss_pred hHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000292 801 TMKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 878 (1713)
Q Consensus 801 ta~ay~nLA~vy~~lG--~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~ 878 (1713)
...+..-.|++....| .+.+|..+|++... ..+....+++.+|.++..+|+|++|...+++|+...
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~---- 231 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD---- 231 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc----
Confidence 3344444555666666 58888888877432 223446778899999999999999999999987432
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000292 879 GPDHIQTAASYHAIAIALSLMEAYPL-SVQHEQTTLQILRAKLGPDDLRTQDAA 931 (1713)
Q Consensus 879 G~d~~~tA~a~~nLA~ay~~lGd~ee-Ale~lekALeI~kk~LG~dh~~t~ea~ 931 (1713)
+....++.|++.+...+|+..+ +.+++.+.. ...++|+......
T Consensus 232 ----~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~-----~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 232 ----PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK-----QSNPNHPLVKDLA 276 (290)
T ss_dssp ----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH-----HHTTTSHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH-----HhCCCChHHHHHH
Confidence 3345678899999999999844 444544322 2357888665443
No 192
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.13 E-value=0.0057 Score=68.43 Aligned_cols=170 Identities=15% Similarity=0.099 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
.|..++++|..|-..|-..-|..-|.++|.+ .|..+.+++.||.-+...|+|+.|.+.|.-.+++
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------- 128 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------- 128 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-------
Confidence 3778899999999999999999999999988 5778899999999999999999999999888775
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH-H------------HHHHHHHHHHH-------
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA-A------------TYINVAMMEEG------- 856 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a-~------------a~~NLA~iy~~------- 856 (1713)
+|..-.+..|-|..++.-|+|.-|.+-+.+-..- .+++|... . +..||..-+..
T Consensus 129 -Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG 202 (297)
T COG4785 129 -DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWG 202 (297)
T ss_pred -CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhh
Confidence 4666677888898889999999988766543221 22233211 1 11122221111
Q ss_pred -------CCCHHHHHHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 857 -------LGNVHVALRYLHKALKCNQRLLGPDHIQ----TAASYHAIAIALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 857 -------lG~~eeAle~lekALei~ek~~G~d~~~----tA~a~~nLA~ay~~lGd~eeAle~lekAL 913 (1713)
+|+..+ ...++++.+.. .+... ...+|+.||..|...|+.++|...|+-|+
T Consensus 203 ~~iV~~yLgkiS~-e~l~~~~~a~a-----~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 203 WNIVEFYLGKISE-ETLMERLKADA-----TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHhhccH-HHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 121110 11122222211 12222 33578899999999999999999998665
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.11 E-value=0.065 Score=59.13 Aligned_cols=172 Identities=16% Similarity=0.095 Sum_probs=116.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 000292 731 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 810 (1713)
Q Consensus 731 qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~ 810 (1713)
.=+.+.++.-..+.+++. |. ..-.+.||..+..+|++.+|..+|++++.- . .......+..||.
T Consensus 69 ~ldP~R~~Rea~~~~~~A--------pT-vqnr~rLa~al~elGr~~EA~~hy~qalsG------~-fA~d~a~lLglA~ 132 (251)
T COG4700 69 KLDPERHLREATEELAIA--------PT-VQNRYRLANALAELGRYHEAVPHYQQALSG------I-FAHDAAMLLGLAQ 132 (251)
T ss_pred hcChhHHHHHHHHHHhhc--------hh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc------c-cCCCHHHHHHHHH
Confidence 334454444444444442 22 334567999999999999999999999862 2 2233566788999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 000292 811 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 890 (1713)
Q Consensus 811 vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~ 890 (1713)
..+..+++..|...+++..+.- +. -........+|.+|..+|++.+|...|+.++.++ ++ ..+.++
T Consensus 133 Aqfa~~~~A~a~~tLe~l~e~~-----pa-~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-----pg--~~ar~~- 198 (251)
T COG4700 133 AQFAIQEFAAAQQTLEDLMEYN-----PA-FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-----PG--PQARIY- 198 (251)
T ss_pred HHHhhccHHHHHHHHHHHhhcC-----Cc-cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-----CC--HHHHHH-
Confidence 9999999999999988877642 11 0112234458999999999999999999999886 11 123344
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000292 891 AIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 936 (1713)
Q Consensus 891 nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~ 936 (1713)
.+..+..+|+.++|...+....+-.++ ..--.++....|+..
T Consensus 199 -Y~e~La~qgr~~ea~aq~~~v~d~~~r---~~~H~rkh~reW~~~ 240 (251)
T COG4700 199 -YAEMLAKQGRLREANAQYVAVVDTAKR---SRPHYRKHHREWIKT 240 (251)
T ss_pred -HHHHHHHhcchhHHHHHHHHHHHHHHh---cchhHHHHHHHHHHH
Confidence 488889999999998876654443332 211223556666643
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=97.07 E-value=0.0032 Score=68.50 Aligned_cols=102 Identities=11% Similarity=-0.033 Sum_probs=83.9
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 756 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 835 (1713)
Q Consensus 756 hp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i 835 (1713)
..+.....+..|.-++..|++++|..+|+-.+.. ++.....+..||.|+..+++|++|+..|-.|..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 4556677888999999999999999999876653 23345668999999999999999999999998763
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000292 836 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 873 (1713)
Q Consensus 836 ~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei 873 (1713)
.++|. ..+..|.+|..+|+.+.|+.+|+.++..
T Consensus 102 --~~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 102 --KNDYR---PVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred --cCCCC---ccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 23332 2567899999999999999999998873
No 195
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.047 Score=63.35 Aligned_cols=259 Identities=14% Similarity=0.018 Sum_probs=157.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH----HHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------
Q 000292 722 LESSKTALDKGKLEDAVTYGTKALAK----LVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD--------- 788 (1713)
Q Consensus 722 lelA~~~l~qG~~eeAle~lqeAL~l----~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~--------- 788 (1713)
+++|+......++++|+..|.+.|.. -++. -.+.-.+...|+.+|...|++..--+.....-.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k 82 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPK 82 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchh
Confidence 56677778889999999999998875 1111 122345677899999999987532222211111
Q ss_pred ---H----HHHhcCC-CC-chhH--------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000292 789 ---I----NERELGL-DH-PDTM--------------------KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 839 (1713)
Q Consensus 789 ---I----~Er~lG~-Dh-p~ta--------------------~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~d 839 (1713)
+ .+...+. |+ ++.+ ..-..+..+|+..|+|.+|+....-.+.-+++. .+
T Consensus 83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--DD 160 (421)
T COG5159 83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY--DD 160 (421)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--cC
Confidence 1 1111111 11 1111 112356788899999999999988888776664 45
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 840 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT-AASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 840 hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~t-A~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
.+....++..-..+|....+..++...+..|-......+-+ |+. +..-..-|.+++...+|..|..||-+|++-|.
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft- 237 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT- 237 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HHHHHHHHHhccceeeccccchhHHHHHHHHHhccc-
Confidence 56677777778889999999998888888777766555432 222 22223336667778899999999999998884
Q ss_pred hcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHH--HHCCCHHHHHHHHHHH
Q 000292 919 KLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTYV 994 (1713)
Q Consensus 919 ~LG~dh~~t~ea~~~La--~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y--~~qGdyeEAl~yyeKA 994 (1713)
++..|......+.++. .+.....+.-.+......... . ......+++..++.+| ....+|..|++-|..-
T Consensus 238 -~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~----~-y~~r~I~am~avaea~~NRsL~df~~aL~qY~~e 311 (421)
T COG5159 238 -LLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLK----H-YDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDE 311 (421)
T ss_pred -cccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHh----h-hhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHH
Confidence 4566655554444432 333333444444433222111 0 1112345566777777 4456788888777654
Q ss_pred H
Q 000292 995 A 995 (1713)
Q Consensus 995 L 995 (1713)
+
T Consensus 312 l 312 (421)
T COG5159 312 L 312 (421)
T ss_pred h
Confidence 3
No 196
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.04 E-value=0.013 Score=73.91 Aligned_cols=242 Identities=14% Similarity=0.143 Sum_probs=158.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 000292 726 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 805 (1713)
Q Consensus 726 ~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay 805 (1713)
++-+..|+..+-+..|.+|+....-.. -+.....++..+|..|...|+.+.|...+.+|+.+--. .-.+++..+
T Consensus 355 RV~l~e~~~~~~i~tyteAv~~vdP~k--a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~----~v~dLa~vw 428 (835)
T KOG2047|consen 355 RVKLYEGNAAEQINTYTEAVKTVDPKK--AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK----TVEDLAEVW 428 (835)
T ss_pred hhhhhcCChHHHHHHHHHHHHccCccc--CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc----chHHHHHHH
Confidence 445678899999999999987532111 12233567888999999999999999999999876211 123567889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHH----HhcCCCChhH------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000292 806 GDLAVFYYRLQHTELALKYVKRALYLLH----LTCGPSHPNT------AATYINVAMMEEGLGNVHVALRYLHKALKCNQ 875 (1713)
Q Consensus 806 ~nLA~vy~~lG~~eeALe~yerALeL~~----~i~G~dhP~~------a~a~~NLA~iy~~lG~~eeAle~lekALei~e 875 (1713)
.+-|....+..+++.|++++++|..+=. ..+...+|-. ..++..++......|-++.....|++.+++.
T Consensus 429 ~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr- 507 (835)
T KOG2047|consen 429 CAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR- 507 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999975422 1233344433 3455666777778888888888888888775
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 000292 876 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE-------SKAFEQQEAA 948 (1713)
Q Consensus 876 k~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~-------qka~e~AeAl 948 (1713)
..+..+..|.|..+....-|++|.+.|++.+.+|+ ..+. ...|..|++ ....+.+..+
T Consensus 508 -------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk----~p~v----~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 508 -------IATPQIIINYAMFLEEHKYFEESFKAYERGISLFK----WPNV----YDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred -------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC----CccH----HHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 23344556668888888888999999999887763 2211 112333332 2222333222
Q ss_pred HhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000292 949 RNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 995 (1713)
Q Consensus 949 ~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKAL 995 (1713)
......... ......+|...+.....-|--..|+..|++|.
T Consensus 573 FEqaL~~Cp------p~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 573 FEQALDGCP------PEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHhcCC------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 221111111 11233455555666666677777888887753
No 197
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.02 E-value=0.0088 Score=63.81 Aligned_cols=105 Identities=18% Similarity=0.139 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000292 760 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 839 (1713)
Q Consensus 760 A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~d 839 (1713)
+..++.-|...+..|+|.+|++.++....-+ +..+....+...|+.+|+..++|++|+..+++-+++ .+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 5577888999999999999999888765432 345566789999999999999999999999999986 688
Q ss_pred ChhHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHH
Q 000292 840 HPNTAATYINVAMMEEGLGN---------------VHVALRYLHKALKCN 874 (1713)
Q Consensus 840 hP~~a~a~~NLA~iy~~lG~---------------~eeAle~lekALei~ 874 (1713)
||.+..+++..|.++..+.. ..+|...|++.++.+
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 99999999999999988766 666777777666654
No 198
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.01 E-value=0.38 Score=63.45 Aligned_cols=155 Identities=19% Similarity=0.126 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 757 RMTAGAYSLLAVVLY-HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 835 (1713)
Q Consensus 757 p~~A~ay~~LA~vy~-~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i 835 (1713)
..-+.++..||.+|+ ++.+++.|..++.|++.+.++ .+.. .....+..-|+.+|...+... |+.++.++++.++..
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~-d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLT-DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchH-HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 445889999999988 899999999999999999876 1111 123456667899999988888 999999999988762
Q ss_pred cCCCChhHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000292 836 CGPSHPNTAATYINV-AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 914 (1713)
Q Consensus 836 ~G~dhP~~a~a~~NL-A~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALe 914 (1713)
+ |.....++.-+ ...+...+++..|++.++....+.... |... ....+....|.++...+..+++++.++++..
T Consensus 133 -~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~d~~-~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 133 -G--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-GDPA-VFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred -C--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-CCHH-HHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 2 22223333323 223323389999999999999887532 3222 2334444556777788888899999999877
Q ss_pred HHHHh
Q 000292 915 ILRAK 919 (1713)
Q Consensus 915 I~kk~ 919 (1713)
.....
T Consensus 208 ~~~~~ 212 (608)
T PF10345_consen 208 QARSL 212 (608)
T ss_pred HHhhc
Confidence 76653
No 199
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.0082 Score=66.51 Aligned_cols=106 Identities=21% Similarity=0.189 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000292 715 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 794 (1713)
Q Consensus 715 s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~l 794 (1713)
...+..+-.-|.-++..|+|.+|..-|++||.++.... ......+|.+.|.++..++.++.|+.-+.|||.+
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel----- 163 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL----- 163 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-----
Confidence 34466777888999999999999999999999865432 2456789999999999999999999999999997
Q ss_pred CCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 795 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 795 G~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
.|....++..-|.+|..+..|++|++-|++.+++
T Consensus 164 ---~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 ---NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred ---CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4666788888999999999999999999999885
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.017 Score=68.02 Aligned_cols=103 Identities=20% Similarity=0.141 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHH
Q 000292 756 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH---TELALKYVKRALYLL 832 (1713)
Q Consensus 756 hp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~---~eeALe~yerALeL~ 832 (1713)
+|..+.-|..||.+|+.+|++..|...|++|+.+. ++....+..+|.+++.+.+ ..+|...+++++.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 67778899999999999999999999999999873 3445566667776665543 47888899999874
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 833 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 833 ~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
+|....+++.||..+...|+|.+|...++..|+..
T Consensus 223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 34456788889999999999999999999988765
No 201
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.92 E-value=0.019 Score=77.38 Aligned_cols=215 Identities=14% Similarity=0.004 Sum_probs=147.0
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 756 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 835 (1713)
Q Consensus 756 hp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i 835 (1713)
+|..+..|..+-..+..+++.++|.+.+++||....-.-+...-+...+|.||=..|. .-+.-.+.|+||.+++.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG---~eesl~kVFeRAcqycd-- 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG---TEESLKKVFERACQYCD-- 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC---cHHHHHHHHHHHHHhcc--
Confidence 5666777777777788899999999999999976411112233456677777777664 45666778888877642
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 836 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 836 ~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
...+|..|.-+|...+++++|.++|+..++-+. +...+|..+|..+..+.+-++|...+++|+..
T Consensus 1529 -------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1529 -------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred -------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 246788899999999999999999998887662 34567777899999999999999999999977
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000292 916 LRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 995 (1713)
Q Consensus 916 ~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKAL 995 (1713)
+.+ .+|.....-.+.|.+- ....+...++..+... .++...++|......-...|+.+-+...|+|++
T Consensus 1594 lPk---~eHv~~IskfAqLEFk-~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1594 LPK---QEHVEFISKFAQLEFK-YGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred cch---hhhHHHHHHHHHHHhh-cCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 643 3455444333333221 1122222233332211 122344567777777778888888888998888
Q ss_pred HHHhhhc
Q 000292 996 KVKGNFY 1002 (1713)
Q Consensus 996 eL~dSl~ 1002 (1713)
.+.-++.
T Consensus 1662 ~l~l~~k 1668 (1710)
T KOG1070|consen 1662 ELKLSIK 1668 (1710)
T ss_pred hcCCChh
Confidence 8765554
No 202
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.90 E-value=0.16 Score=64.49 Aligned_cols=193 Identities=16% Similarity=0.146 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-
Q 000292 803 KSYGDLAVFYYRLQHTELALKYVKR------ALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ- 875 (1713)
Q Consensus 803 ~ay~nLA~vy~~lG~~eeALe~yer------ALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~e- 875 (1713)
..|-.-|.+|....++++|++||++ |+++.+..+. ..+...--..|.-+...|+++.|+..|-+|-.+.+
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp---~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP---EEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc---HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 3455668888888999999999875 5666555432 22334444567777888888888877755432211
Q ss_pred --HhcCCCc-------------HHHH-HHHHHHHHHHHHcCChHHHHHHHHH-------------------HHHHHHHhc
Q 000292 876 --RLLGPDH-------------IQTA-ASYHAIAIALSLMEAYPLSVQHEQT-------------------TLQILRAKL 920 (1713)
Q Consensus 876 --k~~G~d~-------------~~tA-~a~~nLA~ay~~lGd~eeAle~lek-------------------ALeI~kk~L 920 (1713)
...|... ..++ ..|-.+|.-|...|+|+-|.++|.+ |..+..+..
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhc
Confidence 1112110 1111 2345567778888888888776644 233333333
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhh---------------hcCC-ccHHHHHHHHHHHHHHCCCH
Q 000292 921 GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIA---------------SKGH-LSVSDLLDYINPSHDTKGRN 984 (1713)
Q Consensus 921 G~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a---------------~~~~-~svaelL~~LA~~y~~qGdy 984 (1713)
|+...........-..-.++.+..++.++.....+..++. .+.| ..+.+....++.-|...|+.
T Consensus 819 ~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~l 898 (1636)
T KOG3616|consen 819 GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDL 898 (1636)
T ss_pred CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccCh
Confidence 4432222111111111122222223222222222222221 1111 13455667788888888888
Q ss_pred HHHHHHHHHHHHHH
Q 000292 985 VSTLKRKTYVAKVK 998 (1713)
Q Consensus 985 eEAl~yyeKALeL~ 998 (1713)
+.|-..|-++-..+
T Consensus 899 kaae~~flea~d~k 912 (1636)
T KOG3616|consen 899 KAAEEHFLEAGDFK 912 (1636)
T ss_pred hHHHHHHHhhhhHH
Confidence 88877776554443
No 203
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.90 E-value=0.0087 Score=66.33 Aligned_cols=98 Identities=19% Similarity=0.072 Sum_probs=81.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 000292 807 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 886 (1713)
Q Consensus 807 nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA 886 (1713)
.=|.-++..|+|++|..-|..||+++.... .-....+|.|-|.++..++.++.|+.-+-+|+++. +..-
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--------pty~ 168 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--------PTYE 168 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------chhH
Confidence 346778899999999999999999865432 13456789999999999999999999999999986 3445
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 887 ASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 887 ~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
.++...|.+|..+..|++|+.-|++.+++
T Consensus 169 kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 169 KALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 66777899999999999999999987754
No 204
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.027 Score=65.58 Aligned_cols=173 Identities=14% Similarity=0.060 Sum_probs=112.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHH----------HHHHHH
Q 000292 721 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQ----------KALDIN 790 (1713)
Q Consensus 721 LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~----------KAL~I~ 790 (1713)
+-.+|..|+...+|..|-++|++.-.+ +|..+......|..++..+.+..|+.... +++++-
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLq 118 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQ 118 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334477777778888888888775443 55555555556666666666666654332 222211
Q ss_pred HHhc--CC------------CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000292 791 EREL--GL------------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 856 (1713)
Q Consensus 791 Er~l--G~------------Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~ 856 (1713)
..+. .. -....+....|.|.+.+..|+|+.|++-|+.|++. +.-.|.. -+|+|.++..
T Consensus 119 aAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpll---AYniALaHy~ 190 (459)
T KOG4340|consen 119 AAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPLL---AYNLALAHYS 190 (459)
T ss_pred HHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh-----cCCCchh---HHHHHHHHHh
Confidence 1100 00 12345677889999999999999999999999985 3344543 4789999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhc----------CCC-----cH------HHHHHHHHHHHHHHHcCChHHHHHHH
Q 000292 857 LGNVHVALRYLHKALKCNQRLL----------GPD-----HI------QTAASYHAIAIALSLMEAYPLSVQHE 909 (1713)
Q Consensus 857 lG~~eeAle~lekALei~ek~~----------G~d-----~~------~tA~a~~nLA~ay~~lGd~eeAle~l 909 (1713)
.|+++.|+++..+.++.-.+.. |.+ .+ ....++..-+.++.+.|+++.|.+.+
T Consensus 191 ~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 191 SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 9999999999988776543221 111 00 12234455577888899998887654
No 205
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.88 E-value=0.042 Score=70.00 Aligned_cols=177 Identities=14% Similarity=-0.019 Sum_probs=117.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000292 729 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHPDTMKS 804 (1713)
Q Consensus 729 l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~l----Gd~deAle~~~KAL~I~Er~lG~Dhp~ta~a 804 (1713)
--.|+-+.++.++.++.+ ...+.++........|+..-..+... .+.+.|...+...... .|+-...
T Consensus 199 GF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~lf 269 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSALF 269 (468)
T ss_pred CcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcHHH
Confidence 356888899999988765 22222211111122333332222222 2344455555444432 5777888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000292 805 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 884 (1713)
Q Consensus 805 y~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~ 884 (1713)
+..-|.++...|+.++|+++|++|+...... . .-...++..+|+++..+.+|++|..++.+.++.. ...
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-~---Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------~WS 338 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEW-K---QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------KWS 338 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhH-H---hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------ccH
Confidence 8999999999999999999999998533221 1 1124568899999999999999999999887753 223
Q ss_pred HHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHhcCCCCH
Q 000292 885 TAASYHAIAIALSLMEAY-------PLSVQHEQTTLQILRAKLGPDDL 925 (1713)
Q Consensus 885 tA~a~~nLA~ay~~lGd~-------eeAle~lekALeI~kk~LG~dh~ 925 (1713)
.+...|..|.+|...|+. ++|..+++++-....+..|..-+
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 455667789999999999 77777777777776665554433
No 206
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.87 E-value=0.0039 Score=73.18 Aligned_cols=98 Identities=20% Similarity=0.146 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
+..+-+.|..|+.+|+|++|+.+|.+++.+ .|..+..+.+.|.+|+.+..|..|..-+..|+.+-.
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------ 162 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------ 162 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------
Confidence 445778899999999999999999999887 344556788999999999999999999999998843
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
....+|..-|..-..+|+..+|.+-|+.+|++
T Consensus 163 --~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 163 --LYVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred --HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 35789999999999999999999999999986
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.011 Score=69.49 Aligned_cols=124 Identities=18% Similarity=0.123 Sum_probs=96.3
Q ss_pred hhccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC---HHHHHHHHHH
Q 000292 709 KQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD---FNQATIYQQK 785 (1713)
Q Consensus 709 K~~~~~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd---~deAle~~~K 785 (1713)
.+......+++.+..+|.+|+.+|++..|...|.+|+.+ .+.....+..+|.+++.+.+ -.+|..++++
T Consensus 147 ~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 147 THLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 344555667888999999999999999999999999988 34445677778888887653 4678889999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000292 786 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 852 (1713)
Q Consensus 786 AL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~ 852 (1713)
++.. ++..+.+.+.||..++..|+|.+|...++..++.. .++.|....+-..++.
T Consensus 219 al~~--------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia~ 273 (287)
T COG4235 219 ALAL--------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIAR 273 (287)
T ss_pred HHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHH
Confidence 9875 45667889999999999999999999999988763 4455555444333333
No 208
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.80 E-value=0.051 Score=55.97 Aligned_cols=121 Identities=23% Similarity=0.215 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHhcCC---CCch-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 758 MTAGAYSLLAVVL--YHTGDFNQATIYQQKALDINERELGL---DHPD-TMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 758 ~~A~ay~~LA~vy--~~lGd~deAle~~~KAL~I~Er~lG~---Dhp~-ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
+++.+|..|+..- ..-|-|++|..-+++|+.+...+... ||.. .+.++..|+..+..+|+|++++.-..+||..
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 4566777776554 44588999999999999997654322 3332 3577889999999999999999999999998
Q ss_pred HHHhcCCCChh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000292 832 LHLTCGPSHPN----TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 879 (1713)
Q Consensus 832 ~~~i~G~dhP~----~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G 879 (1713)
+... |.-|.+ .+.+-++-|..+..+|+.++|+..|+.+-++..+.-|
T Consensus 85 FNRR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 85 FNRR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred Hhhc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 8764 443433 3455677899999999999999999999998766544
No 209
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.77 E-value=0.091 Score=65.50 Aligned_cols=128 Identities=20% Similarity=0.126 Sum_probs=100.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc------
Q 000292 726 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP------ 799 (1713)
Q Consensus 726 ~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp------ 799 (1713)
....+..+...-+++.++||++ .++.+.+|..||.-. ..-..+|..+|++|++..+..+|.+..
T Consensus 176 q~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 4456778899999999999998 467788887777522 234689999999999999988775321
Q ss_pred -----------hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000292 800 -----------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 868 (1713)
Q Consensus 800 -----------~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~le 868 (1713)
-...+-..||.|..++|+.++|++.++..++.. + .-+...+..||-.+|..++.|.++...+.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-----p-~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-----P-NLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-----C-ccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 113455689999999999999999999887642 1 12356789999999999999999988776
Q ss_pred H
Q 000292 869 K 869 (1713)
Q Consensus 869 k 869 (1713)
+
T Consensus 320 k 320 (539)
T PF04184_consen 320 K 320 (539)
T ss_pred H
Confidence 5
No 210
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.77 E-value=0.071 Score=54.95 Aligned_cols=119 Identities=23% Similarity=0.166 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CCh-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YHR-MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 793 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~---dhp-~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~ 793 (1713)
++..+..|.-.+..|.|++|..-+.+|+++...+-.. ||. -.+.|+..|+..+..+|+|++++.-..+||..+.|.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 4445556677788899999999999999998766322 222 247899999999999999999999999999998875
Q ss_pred cCCCCch----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000292 794 LGLDHPD----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 837 (1713)
Q Consensus 794 lG~Dhp~----ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G 837 (1713)
|.-|.+ .+.+.++-|..+...|+.++|+..|+.+-++....-|
T Consensus 89 -GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 89 -GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp ---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred -cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 443443 4566788899999999999999999999998766544
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.71 E-value=0.0073 Score=56.17 Aligned_cols=58 Identities=28% Similarity=0.385 Sum_probs=53.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 766 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 766 LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
|..+|...++|++|+.++++++.+ +|.....+..+|.+|..+|++.+|+..|+++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467899999999999999999987 5667888999999999999999999999999975
No 212
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.69 E-value=0.46 Score=62.69 Aligned_cols=274 Identities=14% Similarity=0.067 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CC---------------hhHHHHHHHHHHHHHhcCCHHHH
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YH---------------RMTAGAYSLLAVVLYHTGDFNQA 779 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~---dh---------------p~~A~ay~~LA~vy~~lGd~deA 779 (1713)
+-.++-.|..++..|..+.|..++.+++...++..+. .. .....++..++.+.+.++++..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 3445555778888888889999999999988876510 00 01234456778888899999999
Q ss_pred HHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHH
Q 000292 780 TIYQQKALDINERELG-LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS---HPNTAATYINVAMMEE 855 (1713)
Q Consensus 780 le~~~KAL~I~Er~lG-~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~d---hP~~a~a~~NLA~iy~ 855 (1713)
......+.....+... .........++-.|.++...|+.+.|+.+|.+.+-......++. ..-...+..|+..++.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~ 460 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQ 460 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhH
Confidence 9999888877654321 11233467788999999999999999999996654433222222 2223455677888888
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000292 856 GLGNVHVALRYLHKALKCNQRLLGP-DHIQTAASYHAIAIALSL--MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 932 (1713)
Q Consensus 856 ~lG~~eeAle~lekALei~ek~~G~-d~~~tA~a~~nLA~ay~~--lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~ 932 (1713)
..+.-.....-+.+.++..+..... .......++..+-.++.. .-.+.++..++.++++.+-+..+..+ .+.-++.
T Consensus 461 ~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~-l~~~~L~ 539 (608)
T PF10345_consen 461 YESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ-LLAILLN 539 (608)
T ss_pred hhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch-HHHHHHH
Confidence 7666444332233444433222211 112222333333333332 22345899999999999822333332 2222333
Q ss_pred HHHHHH--HHHHHHHHHHHhcCCCCchhhhhcCCccHHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000292 933 WLEYFE--SKAFEQQEAARNGTRKPDASIASKGHLSVSD-----LLDYINPSHDTKGRNVSTLKRKTYVAKV 997 (1713)
Q Consensus 933 ~La~L~--qka~e~AeAl~~~~~~~~~a~a~~~~~svae-----lL~~LA~~y~~qGdyeEAl~yyeKALeL 997 (1713)
.+.... ....+..+.... ....+.+....... .-..+...|...|+.++|....+++-.+
T Consensus 540 lm~~~lf~~~~~e~~~~s~~-----a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 540 LMGHRLFEGDVGEQAKKSAR-----AFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHH-----HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 333221 222222221111 00011111001111 2235666789999999998888776554
No 213
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.69 E-value=0.047 Score=67.11 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHhc
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT--AGAYSLLAVVLYHTGDFNQATIYQQKALD-INEREL 794 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~--A~ay~~LA~vy~~lGd~deAle~~~KAL~-I~Er~l 794 (1713)
+..++-.++.++..|++.+|.+++... .+.+..-|-..++. ...+++||.+++++|.|..+..+|.+|+. ...++.
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 445666778888899999999887653 22222212223333 44568999999999999999999999996 433322
Q ss_pred CC---------CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 795 GL---------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 834 (1713)
Q Consensus 795 G~---------Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~ 834 (1713)
.. .......+++|.|..|...|+.-.|.++|.+|...+..
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 11 12234578899999999999999999999999887643
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.67 E-value=0.007 Score=56.30 Aligned_cols=59 Identities=31% Similarity=0.380 Sum_probs=53.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 808 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 808 LA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
|..+|...++|++|++++++++.+ +|.....+...|.+|..+|++++|+..|+++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467899999999999999999986 45667788999999999999999999999999875
No 215
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.62 E-value=0.017 Score=66.06 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=82.1
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC-----cHHHHHHH
Q 000292 815 LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD-----HIQTAASY 889 (1713)
Q Consensus 815 lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d-----~~~tA~a~ 889 (1713)
...+++|++.|.-|+...... +.++...+.++..+|++|..+|+.+....++++|++.+.+.+... ....+.++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~-~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIK-KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 456788999999888776543 556668899999999999999999999999999999988776322 33556788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 000292 890 HAIAIALSLMEAYPLSVQHEQTTLQ 914 (1713)
Q Consensus 890 ~nLA~ay~~lGd~eeAle~lekALe 914 (1713)
+.+|.++...|++++|..++.+.+.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 8999999999999999999988774
No 216
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.60 E-value=0.16 Score=59.12 Aligned_cols=144 Identities=22% Similarity=0.187 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000292 760 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 839 (1713)
Q Consensus 760 A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~d 839 (1713)
+..+++-|......|+|++|+.+|++.... -+-.+..-.+...|+..++..+++++|+.+..+-+.+ -+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-----yP~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-----YPT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCC
Confidence 567788888999999999999999877632 1344566788999999999999999999999998886 478
Q ss_pred ChhHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHhcCCCcHH--------------HHHHHHHHHHHHHHcC
Q 000292 840 HPNTAATYINVAMMEEGL-----GNVHVALRYLHKALKCNQRLLGPDHIQ--------------TAASYHAIAIALSLME 900 (1713)
Q Consensus 840 hP~~a~a~~NLA~iy~~l-----G~~eeAle~lekALei~ek~~G~d~~~--------------tA~a~~nLA~ay~~lG 900 (1713)
||++..+++..|.++... .+...+...+...-++..+. +++.. .+.--..+|..|...|
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999987743 23333333333332333222 33332 2223355778888888
Q ss_pred ChHHHHHHHHHHHHH
Q 000292 901 AYPLSVQHEQTTLQI 915 (1713)
Q Consensus 901 d~eeAle~lekALeI 915 (1713)
.+-.|+..+++.++-
T Consensus 182 ~~~AA~nR~~~v~e~ 196 (254)
T COG4105 182 AYVAAINRFEEVLEN 196 (254)
T ss_pred ChHHHHHHHHHHHhc
Confidence 888888887776644
No 217
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.57 E-value=0.023 Score=65.06 Aligned_cols=101 Identities=20% Similarity=0.135 Sum_probs=83.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-----CchhHHH
Q 000292 730 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD-----HPDTMKS 804 (1713)
Q Consensus 730 ~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D-----hp~ta~a 804 (1713)
....+++|++.|.-||-... +.+..+...|.++..+|++|..+|+.++...++++|+..+++.+-.. ..+....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~-~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQ-IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 34568899999988887644 44566778899999999999999999999999999999988776332 2244678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 805 YGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 805 y~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
++.+|.++.+.|++++|+++|.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 889999999999999999999999863
No 218
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.01 Score=67.53 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000292 714 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 793 (1713)
Q Consensus 714 ~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~ 793 (1713)
.+..+..+-+.|.-++...+|..|+..|.+|+.+ +|..+..|.+-|.+|+++.+++.+..-.++|+++
T Consensus 6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql---- 73 (284)
T KOG4642|consen 6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL---- 73 (284)
T ss_pred cchHHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc----
Confidence 3455777888888888889999999999999987 6788889999999999999999999999999987
Q ss_pred cCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 794 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 835 (1713)
Q Consensus 794 lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i 835 (1713)
.++.+..++.||.+......|++|+..+++|+.+.+..
T Consensus 74 ----~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 74 ----DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred ----ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999999988764
No 219
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.49 E-value=0.0095 Score=70.13 Aligned_cols=95 Identities=17% Similarity=0.125 Sum_probs=83.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH
Q 000292 764 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 843 (1713)
Q Consensus 764 ~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~ 843 (1713)
-.-|.-|+.+|.|++|+.+|.+++.+ +|.....|.|-|..|+++.+|..|..-+..|+.+-+ ..
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--------~Y 164 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--------LY 164 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--------HH
Confidence 44688999999999999999999986 355667789999999999999999999999998743 34
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 844 AATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 844 a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
..+|...|.+...+|+..+|.+-++.+|++-
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 6789999999999999999999999999875
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.43 E-value=0.26 Score=60.73 Aligned_cols=151 Identities=13% Similarity=0.028 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 000292 732 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 811 (1713)
Q Consensus 732 G~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~v 811 (1713)
..+..|.+.+.++|...++.++......+....+|=..|....+|+.-+.+.+..-.+ ...+-.....+....|.+
T Consensus 113 e~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafA 188 (374)
T PF13281_consen 113 ERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFA 188 (374)
T ss_pred HHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHH
Confidence 3455566677777777666655433334556667777899999999888877655332 112233445566778888
Q ss_pred HHH---cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhcC
Q 000292 812 YYR---LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---------GNVHVALRYLHKALKCNQRLLG 879 (1713)
Q Consensus 812 y~~---lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~l---------G~~eeAle~lekALei~ek~~G 879 (1713)
+.+ .|+.++|+..+..++.- .......++..+|.+|..+ ..+++|+.+|.++.++..
T Consensus 189 LnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~---- 257 (374)
T PF13281_consen 189 LNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP---- 257 (374)
T ss_pred HhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc----
Confidence 888 89999999999887542 2223345667788887642 224555555555555431
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCh
Q 000292 880 PDHIQTAASYHAIAIALSLMEAY 902 (1713)
Q Consensus 880 ~d~~~tA~a~~nLA~ay~~lGd~ 902 (1713)
....-.|+|.++...|.-
T Consensus 258 -----~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 258 -----DYYSGINAATLLMLAGHD 275 (374)
T ss_pred -----cccchHHHHHHHHHcCCc
Confidence 223334566666666653
No 221
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.21 Score=59.62 Aligned_cols=262 Identities=12% Similarity=0.013 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV-VLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~-vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
...+++|..+...|++.+-..+....-..+..+- .+..+.....|-. +...-+..+.-+.++..++....+.. .
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--R 123 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--R 123 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--H
Confidence 4567888999999999887777776666655542 2334444444433 33344556677788888887765521 0
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
.......-..|..+|+..++|.+|+.+....+.-+++. .|.+....++..-..+|+.+.+..+|...+..|-......
T Consensus 124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai 201 (411)
T KOG1463|consen 124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI 201 (411)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence 11112334578899999999999999999888877764 3445556666667888888999999999888877766555
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCC
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKP 955 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La--~L~qka~e~AeAl~~~~~~~ 955 (1713)
+-+.. ..+..-..=|.+++...||..|..||-+|++-|... .++.....++.++. .+.....+.-.++.....
T Consensus 202 YcpPq-lQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~-- 276 (411)
T KOG1463|consen 202 YCPPQ-LQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL--DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKL-- 276 (411)
T ss_pred ccCHH-HHHHHHHhccceeecccccchHHHHHHHHHcccccc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHH--
Confidence 43221 223333344777788899999999999999888643 44455444544433 222222222222221111
Q ss_pred chhhhhcCCccHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
Q 000292 956 DASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTYVAK 996 (1713)
Q Consensus 956 ~~a~a~~~~~svaelL~~LA~~y--~~qGdyeEAl~yyeKALe 996 (1713)
... ......+++..++.++ ..+.+|+.|+.-|+.-+.
T Consensus 277 --~l~--y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 277 --ALK--YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred --HHh--ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 111 1112345667777777 345788888888876554
No 222
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.41 E-value=0.0074 Score=55.32 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=46.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000292 729 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 789 (1713)
Q Consensus 729 l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I 789 (1713)
+..|++++|+.+|++++.. +|....++..||.+|..+|++++|..++.+++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999987 4666778889999999999999999999988764
No 223
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.36 E-value=0.0092 Score=54.69 Aligned_cols=54 Identities=28% Similarity=0.339 Sum_probs=47.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 770 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 770 y~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
++..|++++|+.+|++++.. +|....++..||.+|...|++++|..++.+++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35689999999999999986 5777888999999999999999999999998864
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.35 E-value=0.094 Score=66.89 Aligned_cols=136 Identities=19% Similarity=0.027 Sum_probs=102.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 000292 731 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 810 (1713)
Q Consensus 731 qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~ 810 (1713)
....+.|.+++...+.. .|.-+..+...|+++...|+.++|++.+++|+...... ..-...+++.+|+
T Consensus 246 ~~~~~~a~~lL~~~~~~--------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w 313 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAW 313 (468)
T ss_pred CCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHH
Confidence 34556666666666554 46667788889999999999999999999998533221 1223467899999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHhcCCCcH
Q 000292 811 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-------HVALRYLHKALKCNQRLLGPDHI 883 (1713)
Q Consensus 811 vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~-------eeAle~lekALei~ek~~G~d~~ 883 (1713)
++..+.+|++|..++.+..+. +.-..+...+..|.+|...|+. ++|.++|.++-.+..+..|...|
T Consensus 314 ~~~~~~~w~~A~~~f~~L~~~-------s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 314 CHMFQHDWEEAAEYFLRLLKE-------SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHHHchHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 999999999999999988763 2223455667789999999999 88888888888777776665544
Q ss_pred HH
Q 000292 884 QT 885 (1713)
Q Consensus 884 ~t 885 (1713)
.-
T Consensus 387 ~E 388 (468)
T PF10300_consen 387 LE 388 (468)
T ss_pred hH
Confidence 33
No 225
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.14 E-value=0.086 Score=58.23 Aligned_cols=132 Identities=15% Similarity=0.052 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 000292 721 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 800 (1713)
Q Consensus 721 LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ 800 (1713)
-+.+|..+...|++.+|..+|++++.- .. ...+..+..+++..+..+++.+|...+++..+.- ....
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG------~f-A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~------pa~r 158 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSG------IF-AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN------PAFR 158 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcc------cc-CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC------CccC
Confidence 445677778899999999999999863 22 2234577889999999999999998888776542 1112
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 801 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 801 ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
+......+|..|..+|++.+|...|+.++..+ ++ .......+.++..+|+.++|..-+....+..
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-----pg----~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYY-----PG----PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-----CC----HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 33445678999999999999999999999853 21 2233446889999999999888776665544
No 226
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.097 Score=60.40 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
....+-.+..+.-.|.|.-.+..+.+.++. +.+.-......||++.++.||.+.|..++++.-....+..+.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~- 248 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL- 248 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc-
Confidence 455566677778888888888888887763 234445577889999999999999999999876655544332
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
........|.+.+|...++|..|...|.+++.. ++..+.+.+|-|.++..+|+..+|++.++.++.+.
T Consensus 249 -q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--- 316 (366)
T KOG2796|consen 249 -QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--- 316 (366)
T ss_pred -chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC---
Confidence 344567889999999999999999999888763 34556778899999999999999999999988765
Q ss_pred cCCCcHHHHHHHHHHHHHHH
Q 000292 878 LGPDHIQTAASYHAIAIALS 897 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~ 897 (1713)
+.+...-...++|..+|.
T Consensus 317 --P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 317 --PRHYLHESVLFNLTTMYE 334 (366)
T ss_pred --CccchhhhHHHHHHHHHH
Confidence 333333344555555543
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.05 E-value=0.15 Score=54.26 Aligned_cols=113 Identities=24% Similarity=0.226 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--------------ChhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY--------------HRMTAGAYSLLAVVLYHTGDFNQATIYQQ 784 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~d--------------hp~~A~ay~~LA~vy~~lGd~deAle~~~ 784 (1713)
..+...|......|+...++..+++++.++..-+-++ ......++..++..+...|++++|+.+++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3445556667788999999999999999865332111 11234566778889999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000292 785 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 839 (1713)
Q Consensus 785 KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~d 839 (1713)
+++.+ +|..-.+|..|-.+|..+|++.+|+++|++....+..-+|-.
T Consensus 87 ~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 87 RALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 99987 577778899999999999999999999999999888766643
No 228
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.99 E-value=0.061 Score=64.38 Aligned_cols=139 Identities=24% Similarity=0.174 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCC
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lG--d~deAle~~~KAL~I~Er~lG~ 796 (1713)
+.+.-.-.+++..++++.|.+.++.+-++ ..+ ...+....|++....| .+.+|...|++...
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD---~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-------- 195 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQI-----DED---SILTQLAEAWVNLATGGEKYQDAFYIFEELSD-------- 195 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCC---HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCc---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------
Confidence 33344467888999999999888765432 222 2233344555666666 57888888877422
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-HVALRYLHKALKCNQ 875 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~-eeAle~lekALei~e 875 (1713)
..+.+...++.+|.++..+|+|++|.+.+++|+.. .|....++.|++.+...+|+. +.+.+++.+.....
T Consensus 196 ~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~- 266 (290)
T PF04733_consen 196 KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN- 266 (290)
T ss_dssp CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT-
T ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC-
Confidence 23456788999999999999999999999998752 344566889999999999998 55666666644433
Q ss_pred HhcCCCcHHHH
Q 000292 876 RLLGPDHIQTA 886 (1713)
Q Consensus 876 k~~G~d~~~tA 886 (1713)
++|+.+.
T Consensus 267 ----p~h~~~~ 273 (290)
T PF04733_consen 267 ----PNHPLVK 273 (290)
T ss_dssp ----TTSHHHH
T ss_pred ----CCChHHH
Confidence 5666543
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.15 Score=60.50 Aligned_cols=168 Identities=14% Similarity=-0.012 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000292 720 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 799 (1713)
Q Consensus 720 ~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp 799 (1713)
.+...+...+..|++.+|-....+.|+- +|.-..++..--.+|+.+|+...-...++|.+.-. ..|-|
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp 172 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLP 172 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCc
Confidence 3444456667889999988888887764 45555556666678888999888888877776531 33455
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000292 800 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 879 (1713)
Q Consensus 800 ~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G 879 (1713)
-.......+|..+...|-|++|.+...+|+++- +....+...++.++...|++.++.+++++.-...+.
T Consensus 173 ~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--- 241 (491)
T KOG2610|consen 173 CYSYVHGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--- 241 (491)
T ss_pred HHHHHHHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh---
Confidence 556667778999999999999999999999873 333555667899999999999999999887766532
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000292 880 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 911 (1713)
Q Consensus 880 ~d~~~tA~a~~nLA~ay~~lGd~eeAle~lek 911 (1713)
........|-..|..|...+.|+.|++.|.+
T Consensus 242 -s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 242 -SWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred -hhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 1122333455668888888999999998875
No 230
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=2.7 Score=52.32 Aligned_cols=246 Identities=15% Similarity=0.069 Sum_probs=131.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 000292 721 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 800 (1713)
Q Consensus 721 LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ 800 (1713)
...-|+--..++++..|...|++||.. ++.. ...+...+.+-+.......|..++.+|+.+.-+
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdv-------d~r~-itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-------- 139 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDV-------DYRN-ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-------- 139 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhc-------cccc-chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch--------
Confidence 333344455666677777777777654 3322 335566677777777788888888888777533
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHH--------------------------HHHHHhcCCCChhHHHHHHHHHHHH
Q 000292 801 TMKSYGDLAVFYYRLQHTELALKYVKRAL--------------------------YLLHLTCGPSHPNTAATYINVAMME 854 (1713)
Q Consensus 801 ta~ay~nLA~vy~~lG~~eeALe~yerAL--------------------------eL~~~i~G~dhP~~a~a~~NLA~iy 854 (1713)
.-..++..-.+...+|+...|.+.|++-+ .+++.. ---||.+ ..+...|..-
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerf-V~~HP~v-~~wikyarFE 217 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERF-VLVHPKV-SNWIKYARFE 217 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH-heecccH-HHHHHHHHHH
Confidence 23333444444444555555554444322 222211 1236664 4677788888
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000292 855 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 934 (1713)
Q Consensus 855 ~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~L 934 (1713)
...|+...|...|++|++.. |.+ ......+...|..-..+..++.|...|+-|+.-. ..+ ++.+....+
T Consensus 218 ~k~g~~~~aR~VyerAie~~----~~d-~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~----pk~--raeeL~k~~ 286 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEFL----GDD-EEAEILFVAFAEFEERQKEYERARFIYKYALDHI----PKG--RAEELYKKY 286 (677)
T ss_pred HhcCcHHHHHHHHHHHHHHh----hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Ccc--cHHHHHHHH
Confidence 89999999999999998876 332 2334445555666666677777777776665432 111 122333333
Q ss_pred HHHHHHHHHHH---HHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000292 935 EYFESKAFEQQ---EAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 996 (1713)
Q Consensus 935 a~L~qka~e~A---eAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALe 996 (1713)
..+..+-++.. .++.......-......+....+ .+...-.+....|+-++-.+.|++|+.
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD-sWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD-SWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch-HHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 33333333221 11110000000111122222333 333333444556888888888888765
No 231
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.85 E-value=0.17 Score=56.46 Aligned_cols=126 Identities=19% Similarity=0.140 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000292 782 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 861 (1713)
Q Consensus 782 ~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~e 861 (1713)
-++.-|.-++..++ ......++..+|..|.+.|+++.|++.|.++.+.+. ..-..+..+.++-.+....+++.
T Consensus 18 ~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 18 KLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHH
Confidence 34444444444332 345678899999999999999999999999887531 22345777888899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 862 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 862 eAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~ 916 (1713)
....++.+|-.+... |.+..........-|..+...++|..|.+.|-.+...+
T Consensus 91 ~v~~~i~ka~~~~~~--~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 91 HVEKYIEKAESLIEK--GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 999999999988865 23322222333345667778899999999887776443
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.83 E-value=2.5 Score=51.72 Aligned_cols=162 Identities=17% Similarity=-0.028 Sum_probs=97.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 000292 725 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 803 (1713)
Q Consensus 725 A~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~-A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ 803 (1713)
++..+-.|+++.|..-|+-.+.. |++ ..-+..|=.--..+|+.+.|..|...|.... |...+
T Consensus 127 AQaal~eG~~~~Ar~kfeAMl~d---------PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~W 189 (531)
T COG3898 127 AQAALLEGDYEDARKKFEAMLDD---------PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPW 189 (531)
T ss_pred HHHHHhcCchHHHHHHHHHHhcC---------hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCch
Confidence 67777899999999999876643 332 1223333334456899999999999887653 44455
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 804 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT--AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 881 (1713)
Q Consensus 804 ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~--a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d 881 (1713)
+...+=...+..|+++.|+++.+...... +.+++-.+. +..+..-+..+ -.-+...|.....+++++.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~------- 259 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLA------- 259 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcC-------
Confidence 55545555678999999999998876542 223332222 11222222222 2234566777766666654
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000292 882 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 914 (1713)
Q Consensus 882 ~~~tA~a~~nLA~ay~~lGd~eeAle~lekALe 914 (1713)
+..+-.-..-+.+|...|+..++-..++.+.+
T Consensus 260 -pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 260 -PDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred -CccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 12222223346677777777777777766653
No 233
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.76 Score=53.72 Aligned_cols=171 Identities=16% Similarity=0.167 Sum_probs=109.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 000292 721 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 800 (1713)
Q Consensus 721 LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ 800 (1713)
+...|.+|+..|++++|+........+ .++..--.++.++.+++-|....++...+-+.
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided-------- 169 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED-------- 169 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------
Confidence 444578889999999999888774333 12222345666777888888888888776332
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 801 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 880 (1713)
Q Consensus 801 ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~ 880 (1713)
.++..||..|...- .+-.-++.|+.+++...+.. +.+..+++.+|.+...+|+|++|...++.||.-.
T Consensus 170 --~tLtQLA~awv~la---~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd------ 237 (299)
T KOG3081|consen 170 --ATLTQLAQAWVKLA---TGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD------ 237 (299)
T ss_pred --HHHHHHHHHHHHHh---ccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc------
Confidence 23344554444321 11112555666666654433 3346678899999999999999999999999754
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 000292 881 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 930 (1713)
Q Consensus 881 d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea 930 (1713)
.....++.|+-.+-...|.-.++..-+-.-+. ...+.|+.....
T Consensus 238 --~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk----~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 238 --AKDPETLANLIVLALHLGKDAEVTERNLSQLK----LSHPEHPFVKHL 281 (299)
T ss_pred --CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH----hcCCcchHHHHH
Confidence 22355677777777778888777664433221 335667655443
No 234
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.026 Score=64.36 Aligned_cols=99 Identities=18% Similarity=0.168 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh
Q 000292 763 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 842 (1713)
Q Consensus 763 y~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~ 842 (1713)
+..-|..|+.-..|+.|+..|-+||.+ +|..+..|.|-|.||..+.+++.+..-..+|+++ .|.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N 76 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN 76 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence 444567777888899999999999987 5788889999999999999999999999999987 467
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 843 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 843 ~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
.+...+.+|..+.....|++|+..+++|+.+.+..
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999998887543
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.73 E-value=2.7 Score=54.17 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=23.3
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000292 755 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 786 (1713)
Q Consensus 755 dhp~~A~ay~~LA~vy~~lGd~deAle~~~KA 786 (1713)
++.....+++++|..++.+..+++|.+||.+.
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455667788888888888888888877654
No 236
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.6 Score=54.18 Aligned_cols=140 Identities=13% Similarity=0.120 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000292 760 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 839 (1713)
Q Consensus 760 A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~d 839 (1713)
..+.+.+..++.-+|+|.-.+..+.+.+.. +.+.-......||.+-.+.|+.+.|..|+++.-+...+.-+
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~-- 247 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG-- 247 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--
Confidence 346677888999999999999999988773 33444555677899999999999999999987765444322
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 840 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 840 hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~ 916 (1713)
-.....+..|.+.+|...++|..|...|.+.+... +..+.+..+-|.++...|+...|++.++.++++.
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccC--------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 12335567889999999999999999998877643 3455667778889999999999999988877653
No 237
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.61 E-value=0.22 Score=55.54 Aligned_cols=129 Identities=13% Similarity=0.047 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcC
Q 000292 737 AVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ 816 (1713)
Q Consensus 737 Ale~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG 816 (1713)
-++-++.-|+-++...+ ...+..++..+|..|+..|++++|++.|.++.... ...-..+..+.++-.+....+
T Consensus 15 ~~~~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~ 87 (177)
T PF10602_consen 15 ELEKLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFG 87 (177)
T ss_pred HHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhC
Confidence 34445555555554444 35667899999999999999999999999976642 122346788889999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 817 HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 817 ~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
++..+..++.+|-.+... |.+..........-|..+...++|..|-..|-.++.-+
T Consensus 88 d~~~v~~~i~ka~~~~~~--~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 88 DWSHVEKYIEKAESLIEK--GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred CHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 999999999999998776 23322233334446777778899999999888776443
No 238
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.58 E-value=0.23 Score=52.81 Aligned_cols=111 Identities=21% Similarity=0.133 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC--------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000292 805 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH--------------PNTAATYINVAMMEEGLGNVHVALRYLHKA 870 (1713)
Q Consensus 805 y~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dh--------------P~~a~a~~NLA~iy~~lG~~eeAle~lekA 870 (1713)
+...|......++.+.++..+++++.+++--+-++. .....++..++..+...|++++|+.+++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344455566778889999999999988764322221 112456677888889999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000292 871 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 923 (1713)
Q Consensus 871 Lei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~d 923 (1713)
+.+. |..-.++..+-.+|...|+...|+.+|++....+.+.+|..
T Consensus 89 l~~d--------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 89 LALD--------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHS--------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HhcC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 9875 44556788889999999999999999999999999888864
No 239
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.56 E-value=1.3 Score=53.43 Aligned_cols=253 Identities=15% Similarity=0.104 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM-TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~-~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
...+..+..++..|+++++..++.++.......+...... ...+|..|..+ ..+.+.+++..+.......
T Consensus 30 ~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l-q~L~Elee~~~~~~~~~~~-------- 100 (352)
T PF02259_consen 30 EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL-QQLVELEEIIELKSNLSQN-------- 100 (352)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-hHHHHHHHHHHHHHhhccc--------
Confidence 3445556667789999999999999988765443322221 22333333322 2233344444433211100
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 875 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G--~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~e 875 (1713)
+...... +-.--.+...........+..+.+...++. ......+.++..++.+....|+++.|..++.++.....
T Consensus 101 -~~~~~~l--~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~ 177 (352)
T PF02259_consen 101 -PQDLKSL--LKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP 177 (352)
T ss_pred -HHHHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC
Confidence 0000000 011111111112233344444444433332 11345678899999999999999999999988776531
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000292 876 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ-ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 954 (1713)
Q Consensus 876 k~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALe-I~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~ 954 (1713)
. .......+.+..|.++...|+..+|+..++..+. ......+...... ...++.+ .....
T Consensus 178 ~----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~--~~~~~~~-------------~~~~~ 238 (352)
T PF02259_consen 178 S----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE--LKSGLLE-------------SLEVI 238 (352)
T ss_pred c----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH--Hhhcccc-------------ccccc
Confidence 1 1111334556669999999999999999987776 3322222111110 0001000 00000
Q ss_pred CchhhhhcCCccHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHhhhc
Q 000292 955 PDASIASKGHLSVSDLLDYINPSHDTK------GRNVSTLKRKTYVAKVKGNFY 1002 (1713)
Q Consensus 955 ~~~a~a~~~~~svaelL~~LA~~y~~q------GdyeEAl~yyeKALeL~dSl~ 1002 (1713)
.............+.++..+|...... ++.++++.+|+++.++.+..+
T Consensus 239 ~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 239 SSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 000001111224456677777777666 888899999999988877655
No 240
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.53 E-value=0.067 Score=65.83 Aligned_cols=130 Identities=16% Similarity=0.140 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchh--HHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHHh
Q 000292 759 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT--MKSYGDLAVFYYRLQHTELALKYVKRALY-LLHLT 835 (1713)
Q Consensus 759 ~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~t--a~ay~nLA~vy~~lG~~eeALe~yerALe-L~~~i 835 (1713)
.+.++..-+..+|..|+|.+|.+++...= +.+...|-..|.. ...++|||.+++++|.|..+..+|++||. .+...
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 45667778999999999999998775542 2222212223332 34568999999999999999999999996 33332
Q ss_pred -cC-CC-------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 000292 836 -CG-PS-------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 897 (1713)
Q Consensus 836 -~G-~d-------hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~ 897 (1713)
-| .. ......+++|.|..|...|+.-.|.++|.+|...+.+ ....|..||.++.
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~--------nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR--------NPRLWLRLAECCI 380 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc--------CcHHHHHHHHHHH
Confidence 12 00 1123567899999999999999999999999988743 2356777777765
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.48 E-value=0.21 Score=62.36 Aligned_cols=130 Identities=18% Similarity=0.138 Sum_probs=99.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh----
Q 000292 766 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP---- 841 (1713)
Q Consensus 766 LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP---- 841 (1713)
+-.-.++..+...-+++.++||++. |+.+.+|.-||.= ...-..+|+++|++|++..+..++.+..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~ 243 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHH 243 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcc
Confidence 3445567778889999999999984 5667788777742 2344689999999999988877665310
Q ss_pred -------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Q 000292 842 -------------NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 908 (1713)
Q Consensus 842 -------------~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~ 908 (1713)
-...+...||++..++|+.++|++.++..++... ......++.+|..++..++.|.++...
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 0134567899999999999999999998887641 123556889999999999999999877
Q ss_pred HHH
Q 000292 909 EQT 911 (1713)
Q Consensus 909 lek 911 (1713)
+.+
T Consensus 318 L~k 320 (539)
T PF04184_consen 318 LAK 320 (539)
T ss_pred HHH
Confidence 664
No 242
>KOG3965 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.032 Score=58.95 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=49.3
Q ss_pred CCCCceEEEEEEEeCCCEEEEEEeccceeecCCC--------------CcccchHHHHHhhhcHHHHHHHH
Q 000292 39 SPDDHLLSLDVKLCNGKMVNVEACRKGFYSVGKQ--------------RILCHNIVDLLGQLSRAFDNAYN 95 (1713)
Q Consensus 39 ~~~gdl~yL~v~t~eg~~~~Ita~~~GFyvn~~~--------------~~~~HsL~~LL~~iSp~F~~~f~ 95 (1713)
|.-.||+||+|+|.|+-+|-|-=+.+||=|..++ ...+-|+..||-.|||.|+..|-
T Consensus 58 p~~~dliyiNV~T~E~~~yCleLT~kG~rIvS~~~d~~ngd~~~~~l~t~yyes~y~LLd~ISP~y~E~Fg 128 (160)
T KOG3965|consen 58 PRTSDLIYINVRTLEQVPYCLELTRKGWRIVSSRYDCMNGDFTEDDLHTKYYESAYQLLDDISPLYRERFG 128 (160)
T ss_pred CCCCCeEEEEeEeecCCceeeeecccceeeeccccchhcccchhhhhhhHHHhhHHHHHhhcChHHHHHHH
Confidence 4477899999999999999999999999996431 23578999999999999999986
No 243
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.084 Score=62.72 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
.|..+-+.|.-|+...+|..|+..|.++|..- + .+....+.+|.|.|.+.+.+|+|..|+.-+.+|+.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k---c-~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------- 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK---C-ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------- 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc---C-CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 58888999999999999999999999998762 2 344456889999999999999999999999999886
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 832 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~ 832 (1713)
.|....+|+.-|.|++.+.++++|+.+++..+.+.
T Consensus 149 -~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 -KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred -CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 57778999999999999999999999998887664
No 244
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=1.5 Score=51.48 Aligned_cols=143 Identities=16% Similarity=0.095 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 000292 761 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 840 (1713)
Q Consensus 761 ~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dh 840 (1713)
..+..-|.+|.+-|++++|+....+...+ .+...--.++.++.+++-|.+.+++...+-..
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------ 169 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED------ 169 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH------
Confidence 34445578899999999999877663222 22222334666778888888888887765221
Q ss_pred hhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 841 PNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 841 P~~a~a~~NLA~iy~~----lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~ 916 (1713)
.++..||..|.. -+++.+|.-+|++ ..+. .+.+...+..+|.++..+|+|++|...++.|+.-
T Consensus 170 ----~tLtQLA~awv~la~ggek~qdAfyifeE-------~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k- 236 (299)
T KOG3081|consen 170 ----ATLTQLAQAWVKLATGGEKIQDAFYIFEE-------LSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK- 236 (299)
T ss_pred ----HHHHHHHHHHHHHhccchhhhhHHHHHHH-------Hhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 234445555543 2345555555543 3222 2335567778899999999999999999998843
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHH
Q 000292 917 RAKLGPDDLRTQDAAAWLEYFES 939 (1713)
Q Consensus 917 kk~LG~dh~~t~ea~~~La~L~q 939 (1713)
...++.++.....+.....
T Consensus 237 ----d~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 237 ----DAKDPETLANLIVLALHLG 255 (299)
T ss_pred ----cCCCHHHHHHHHHHHHHhC
Confidence 2445665555544444433
No 245
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.01 E-value=0.65 Score=52.12 Aligned_cols=100 Identities=14% Similarity=-0.033 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000292 803 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 882 (1713)
Q Consensus 803 ~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~ 882 (1713)
.+-..+|..+...+++++|+..++.++... .|......+-.+||.+...+|++++|+..+...- ++
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~ 155 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK---------EE 155 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cc
Confidence 445678889999999999999999998642 2233345566789999999999999988775432 22
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 883 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 883 ~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~ 916 (1713)
...+......|.++...|+-++|+..|++|++..
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3445556667999999999999999999999763
No 246
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.91 E-value=0.33 Score=48.37 Aligned_cols=82 Identities=20% Similarity=0.148 Sum_probs=62.7
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 000292 812 YYRLQHTELALKYVKRALYLLHLTCGPSH-PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 890 (1713)
Q Consensus 812 y~~lG~~eeALe~yerALeL~~~i~G~dh-P~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~ 890 (1713)
..+.|+|..|++.+.+.++.........+ .....++.++|.++...|++++|+..+++|+++.++. .|....+.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 45789999999999999998776433321 1345678889999999999999999999999999876 44445555555
Q ss_pred HHHHH
Q 000292 891 AIAIA 895 (1713)
Q Consensus 891 nLA~a 895 (1713)
.++.+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 55544
No 247
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.28 Score=56.27 Aligned_cols=105 Identities=14% Similarity=0.066 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CChh-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YHRM-------TAGAYSLLAVVLYHTGDFNQATIYQQKALD 788 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~---dhp~-------~A~ay~~LA~vy~~lGd~deAle~~~KAL~ 788 (1713)
..+.+.|.-++.+|+|.+|...|++|+..++++.-. ..++ ....+.|++.++...|+|-++++.....|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 456777888999999999999999999987765322 1222 344688999999999999999999988876
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 789 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 789 I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
. ++....+|+.-|..+...-+.++|..-|.++|++
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 4 6788899999999999999999999999999985
No 248
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.82 E-value=0.28 Score=48.81 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=64.9
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 000292 855 EGLGNVHVALRYLHKALKCNQRLLGPD-HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 933 (1713)
Q Consensus 855 ~~lG~~eeAle~lekALei~ek~~G~d-~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~ 933 (1713)
...|+|..|++.+.+..+......... ......++.++|.++...|++++|+..+++|+.+.++. .|......++.|
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~~ 86 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALSW 86 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHH
Confidence 478999999999999999876543322 12455678889999999999999999999999999876 455566667777
Q ss_pred HHHHHH
Q 000292 934 LEYFES 939 (1713)
Q Consensus 934 La~L~q 939 (1713)
+..+..
T Consensus 87 ~~~l~~ 92 (94)
T PF12862_consen 87 LANLLK 92 (94)
T ss_pred HHHHhh
Confidence 766543
No 249
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.79 E-value=0.64 Score=53.94 Aligned_cols=181 Identities=13% Similarity=0.067 Sum_probs=126.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 000292 730 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 809 (1713)
Q Consensus 730 ~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA 809 (1713)
...+.++|+.-|++.+++- |.....-..++-.+-.+++.+|+|++.+.+|.+.+...+.....++.. .+.+++-
T Consensus 39 ~e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~Il 112 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSIL 112 (440)
T ss_pred cccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHH
Confidence 3457899999999999873 333344467888899999999999999999999998876654444332 2333444
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH----HH
Q 000292 810 VFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI----QT 885 (1713)
Q Consensus 810 ~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~----~t 885 (1713)
.+-....+.+.-..+|+..|+.++.. .+......+-..||.+|...++|..-.+.+++.-..++.-.|.+.. +.
T Consensus 113 DyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQL 190 (440)
T KOG1464|consen 113 DYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQL 190 (440)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchh
Confidence 44445556666667777777766653 2223334455678999999999988888888877777666665433 34
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 886 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 886 A~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
..+|..--+.|..+.+-.+-...|++|+.|-..
T Consensus 191 LEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSA 223 (440)
T KOG1464|consen 191 LEIYALEIQMYTEQKNNKKLKALYEQALHIKSA 223 (440)
T ss_pred hhhHhhHhhhhhhhcccHHHHHHHHHHHHhhcc
Confidence 455655567788888888777888888877543
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=1.4 Score=52.62 Aligned_cols=128 Identities=18% Similarity=0.046 Sum_probs=102.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000292 766 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 845 (1713)
Q Consensus 766 LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~ 845 (1713)
-+.+.+..|++.+|.....|.|+ |+|....+...--..|+.+|+...-...+++.+-.+ .++.|-...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~--------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sY 176 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLD--------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSY 176 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHH--------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHH
Confidence 35567788999999888888876 467777777777778888999998888888877643 456676677
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 846 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 846 a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekAL 913 (1713)
+...++..+...|-|++|.+..++|+++. +.-.-+.+.+|.++...|++.++.+++.+.-
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 77778888999999999999999999886 2345667788999999999999999887654
No 251
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=17 Score=45.77 Aligned_cols=185 Identities=13% Similarity=0.052 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----------
Q 000292 720 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI---------- 789 (1713)
Q Consensus 720 ~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I---------- 789 (1713)
.++.-|+.-...|+..-|...|.+|++.+.. .......+...|..--.+..++.|..+|+-||+.
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~ 283 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELY 283 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 3444456666777777788888777776422 2233334444444444455555555555444432
Q ss_pred -----HHHhcCC---------------------CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-Chh
Q 000292 790 -----NERELGL---------------------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-HPN 842 (1713)
Q Consensus 790 -----~Er~lG~---------------------Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~d-hP~ 842 (1713)
.++.+|. ++|....++...-.+....|+.+.-.+.|++|+.-..-..... ...
T Consensus 284 k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~R 363 (677)
T KOG1915|consen 284 KKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRR 363 (677)
T ss_pred HHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHH
Confidence 1222221 3444455566666666777999999999999986321100000 011
Q ss_pred HHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 843 TAATYINVAMM-EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 843 ~a~a~~NLA~i-y~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekAL 913 (1713)
.+.++.|.+.. -....+.+.+.+.|+.+|++. ...+...+.++...|.....+.+...|.+.+-.|+
T Consensus 364 YIYLWinYalyeEle~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 364 YIYLWINYALYEELEAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 23344444433 236788999999999999875 22344556666666777777777777766665554
No 252
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.63 E-value=0.7 Score=51.88 Aligned_cols=101 Identities=18% Similarity=0.036 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000292 760 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 839 (1713)
Q Consensus 760 A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~d 839 (1713)
..+...+|..+...+++++|+..++.++... .|......+-.+||.+...+|++++|+..+...- +
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~ 154 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK---------E 154 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------c
Confidence 3455678999999999999999999998642 2334445667789999999999999997765432 2
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 840 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 840 hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
+..........|.++...|+-++|+..|++|+...
T Consensus 155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 33344455568999999999999999999999863
No 253
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.58 E-value=1.3 Score=51.41 Aligned_cols=191 Identities=9% Similarity=0.010 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000292 720 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 799 (1713)
Q Consensus 720 ~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp 799 (1713)
++-+.-.+++.+|+|++-.+.|.+.|...+......+.+ .+.+.+-..-....+.+--.++|+-.+...+.. .+..
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdA--KNeR 142 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDYISTSKNMDLLQEFYETTLDALKDA--KNER 142 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh--hcce
Confidence 344455788899999999999999999876554333322 122222222222333444445666666655442 2233
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000292 800 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH----PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 875 (1713)
Q Consensus 800 ~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dh----P~~a~a~~NLA~iy~~lG~~eeAle~lekALei~e 875 (1713)
.....-..||.+|+..++|.+-.+.+++.-.-++.--|.++ .....+|..--.+|..+++-..-..+|++||.+..
T Consensus 143 LWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKS 222 (440)
T KOG1464|consen 143 LWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKS 222 (440)
T ss_pred eeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhc
Confidence 34455667999999999998887777776665555445443 23456676667889999998888889999998864
Q ss_pred HhcCCCcHHHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000292 876 RLLGPDHIQTA-ASYHAIAIALSLMEAYPLSVQHEQTTLQILR 917 (1713)
Q Consensus 876 k~~G~d~~~tA-~a~~nLA~ay~~lGd~eeAle~lekALeI~k 917 (1713)
.+ .||... .+.-.=|..+.+.|+|++|-.-|=+|..-+.
T Consensus 223 AI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 223 AI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred cC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 43 344433 3333346677888999998887766665443
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=1.3 Score=52.68 Aligned_cols=145 Identities=17% Similarity=0.202 Sum_probs=98.5
Q ss_pred HHHHHHhhhhhhcccccCCCCCCc-------hHHHHhhhccchhhccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000292 673 RGLCHKVGIELVSRDFDMDSPSPF-------RKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKAL 745 (1713)
Q Consensus 673 ReLc~KlGIqL~~R~Y~fdsa~~F-------~~eDIlnl~PvvK~~~~~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL 745 (1713)
..++.++|||-...-|-|-...+. .++.|..+.-. +... .....+..+...+..|++.+|...|..++
T Consensus 87 p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~--~~~~---~~e~~~~~~~~~~~~e~~~~a~~~~~~al 161 (304)
T COG3118 87 PMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDK--VLPA---EEEEALAEAKELIEAEDFGEAAPLLKQAL 161 (304)
T ss_pred hhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHH--hcCh---HHHHHHHHhhhhhhccchhhHHHHHHHHH
Confidence 356678899888888877543221 12223332211 1111 34455667788889999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHH---------------HHHHHHHhcCC-----------CCc
Q 000292 746 AKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK---------------ALDINERELGL-----------DHP 799 (1713)
Q Consensus 746 ~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~K---------------AL~I~Er~lG~-----------Dhp 799 (1713)
... ++...+...|+.+|...|+.+.|...+.. .+.+.++.-.. .+|
T Consensus 162 ~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadP 233 (304)
T COG3118 162 QAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADP 233 (304)
T ss_pred HhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 873 34466778899999999999877765533 24444443222 256
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000292 800 DTMKSYGDLAVFYYRLQHTELALKYVKRALY 830 (1713)
Q Consensus 800 ~ta~ay~nLA~vy~~lG~~eeALe~yerALe 830 (1713)
+...+-+.||..|...|+++.|++.+-..+.
T Consensus 234 dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 234 DDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677788999999999999999988765554
No 255
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.31 Score=56.01 Aligned_cols=107 Identities=15% Similarity=0.115 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC---ch-------hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 760 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH---PD-------TMKSYGDLAVFYYRLQHTELALKYVKRAL 829 (1713)
Q Consensus 760 A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dh---p~-------ta~ay~nLA~vy~~lG~~eeALe~yerAL 829 (1713)
..++..-|.-++.+|+|.+|...|+.|+...+.+.-... |. ....|.|.+.|+...|+|-++++.....|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 346677889999999999999999999988766543222 22 23467899999999999999999888877
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 830 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 830 eL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
.. ||....+|+.-|.+....=+.++|..-|.++|++.
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 63 68889999999999999999999999999999864
No 256
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.54 E-value=4.2 Score=49.18 Aligned_cols=132 Identities=17% Similarity=0.176 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHH
Q 000292 714 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD-INER 792 (1713)
Q Consensus 714 ~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~-I~Er 792 (1713)
....+..++..+..+...|+++.|..++.++...... .......+....+.+++..|+..+|+..++..+. ....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 3445778888999999999999999999887764211 1111345666779999999999999999988887 3222
Q ss_pred hc-------------------------CCCCchhHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHHhcCCCCh
Q 000292 793 EL-------------------------GLDHPDTMKSYGDLAVFYYRL------QHTELALKYVKRALYLLHLTCGPSHP 841 (1713)
Q Consensus 793 ~l-------------------------G~Dhp~ta~ay~nLA~vy~~l------G~~eeALe~yerALeL~~~i~G~dhP 841 (1713)
.. .......+.++..+|...... +..++++.+|.+|+.+. +
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~--------~ 289 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD--------P 289 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC--------h
Confidence 10 111234557788888888888 88899999999998863 4
Q ss_pred hHHHHHHHHHHHHHHC
Q 000292 842 NTAATYINVAMMEEGL 857 (1713)
Q Consensus 842 ~~a~a~~NLA~iy~~l 857 (1713)
....+++.+|..+...
T Consensus 290 ~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 290 SWEKAWHSWALFNDKL 305 (352)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4455677777766543
No 257
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.33 E-value=0.92 Score=54.02 Aligned_cols=109 Identities=16% Similarity=0.095 Sum_probs=78.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHh--cCCCChh----
Q 000292 770 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYLLHLT--CGPSHPN---- 842 (1713)
Q Consensus 770 y~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG-~~eeALe~yerALeL~~~i--~G~dhP~---- 842 (1713)
.+.+|+++.|..++.|+-.+........-...+..++++|.-....+ +++.|..++++|++++... ....+++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999999887642111112346688999999999999 9999999999999997551 1233333
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000292 843 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 879 (1713)
Q Consensus 843 ~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G 879 (1713)
...++..|+.+|...+.++...+ ..++++..+.-+|
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~ 118 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG 118 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC
Confidence 46778899999999888764443 4445555544444
No 258
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.25 E-value=0.087 Score=43.05 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 804 SYGDLAVFYYRLQHTELALKYVKRALYLLHL 834 (1713)
Q Consensus 804 ay~nLA~vy~~lG~~eeALe~yerALeL~~~ 834 (1713)
+|.+||.+|..+|+|++|+++|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999987654
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.99 E-value=0.1 Score=42.58 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000292 762 AYSLLAVVLYHTGDFNQATIYQQKALDINER 792 (1713)
Q Consensus 762 ay~~LA~vy~~lGd~deAle~~~KAL~I~Er 792 (1713)
+|.+||.+|..+|+|++|+.+|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999977654
No 260
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.98 E-value=2.7 Score=52.07 Aligned_cols=151 Identities=17% Similarity=0.061 Sum_probs=103.4
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---------------------CCchhHHHHHHHHHHHHH
Q 000292 756 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL---------------------DHPDTMKSYGDLAVFYYR 814 (1713)
Q Consensus 756 hp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~---------------------Dhp~ta~ay~nLA~vy~~ 814 (1713)
+|....++..++.++.++|++..|.++.++||-.+++.+.. .+.....++......+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 56677899999999999999999999999999998865321 122234455666777888
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 000292 815 LQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 893 (1713)
Q Consensus 815 lG~~eeALe~yerALeL~~~i~G~d-hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA 893 (1713)
.|-+..|+++.+-.+.+ .+. +|. .++..|-....+.++|+--+++++.......+. .........+.+|
T Consensus 116 RG~~rTAlE~~KlLlsL-----dp~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~a 185 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSL-----DPDEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIA 185 (360)
T ss_pred cCcHHHHHHHHHHHHhc-----CCCCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHH
Confidence 99999999888877765 333 453 334445555667788877777776655421110 0001113445567
Q ss_pred HHHHHcCCh---------------HHHHHHHHHHHHHH
Q 000292 894 IALSLMEAY---------------PLSVQHEQTTLQIL 916 (1713)
Q Consensus 894 ~ay~~lGd~---------------eeAle~lekALeI~ 916 (1713)
.++...++- +.|...+++|+..+
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 778878877 88999999988665
No 261
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.95 E-value=0.1 Score=41.49 Aligned_cols=30 Identities=37% Similarity=0.613 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000292 760 AGAYSLLAVVLYHTGDFNQATIYQQKALDI 789 (1713)
Q Consensus 760 A~ay~~LA~vy~~lGd~deAle~~~KAL~I 789 (1713)
+.+|+++|.+|..+|++++|+.+|++|+.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 468999999999999999999999999987
No 262
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.93 E-value=0.55 Score=56.00 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHhcCCCC
Q 000292 762 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLLHLTCGPSH 840 (1713)
Q Consensus 762 ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~-lG~~eeALe~yerALeL~~~i~G~dh 840 (1713)
+|..+.....+.+..+.|...|.+|+. +......+|...|.+.+. .++.+.|.+.|+++++.+ +..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCC
Confidence 344555666666668888888888852 223445778889999777 566666999999999864 223
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 841 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 841 P~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~ 916 (1713)
+ ..+......+...++.+.|..+|++++... ........+|......-...|+.+.....++++.+++
T Consensus 70 ~---~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 70 P---DFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp H---HHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred H---HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3 334445577789999999999999998653 1111133456666677777888888888887777654
No 263
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.91 E-value=0.11 Score=41.36 Aligned_cols=30 Identities=40% Similarity=0.584 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 802 MKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 802 a~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
+.+|+++|.+|..+|++++|+.+|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357899999999999999999999999987
No 264
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.90 E-value=0.4 Score=53.23 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=53.4
Q ss_pred ChhHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCC----hHHHHHHHHHH
Q 000292 756 HRMTAGAYSLLAVVLYHTGDF---NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH----TELALKYVKRA 828 (1713)
Q Consensus 756 hp~~A~ay~~LA~vy~~lGd~---deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~----~eeALe~yerA 828 (1713)
+|..+..+++-|.++..+.++ .++..+++.|+.-++..+.. +|....++++||.+|..++. ..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 466678888888888877655 44666777776666655433 57788999999999987764 35677777777
Q ss_pred HHHHHHh
Q 000292 829 LYLLHLT 835 (1713)
Q Consensus 829 LeL~~~i 835 (1713)
...+++.
T Consensus 100 ~~~FqkA 106 (186)
T PF06552_consen 100 TEYFQKA 106 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666543
No 265
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.77 E-value=10 Score=44.48 Aligned_cols=184 Identities=14% Similarity=0.078 Sum_probs=110.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---C-------hhHHHHHHHHHHHHHhcC--------------CHHH
Q 000292 723 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY---H-------RMTAGAYSLLAVVLYHTG--------------DFNQ 778 (1713)
Q Consensus 723 elA~~~l~qG~~eeAle~lqeAL~l~eqv~G~d---h-------p~~A~ay~~LA~vy~~lG--------------d~de 778 (1713)
...+.++..|+..+|+..++.=+..+..+.|.. . ...+.-|..+|.+..... -|..
T Consensus 15 ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy~~ 94 (247)
T PF11817_consen 15 KICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYYQI 94 (247)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHHHH
Confidence 345778899999999999999999988887651 1 122333445555544332 1223
Q ss_pred HHHHHHHHHHHHHHhcC-CC-------------------CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 000292 779 ATIYQQKALDINERELG-LD-------------------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 838 (1713)
Q Consensus 779 Ale~~~KAL~I~Er~lG-~D-------------------hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~ 838 (1713)
|..+...--...+.... ++ .+.....+..+.............++++.+|+..++.. +
T Consensus 95 AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~-~- 172 (247)
T PF11817_consen 95 AAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY-G- 172 (247)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh-c-
Confidence 33322222222222210 01 00000111111111112233456788899999888764 2
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000292 839 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 910 (1713)
Q Consensus 839 dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~le 910 (1713)
.......+...||..|...|+|++|+.+|+.+...+++- .-......++..|..++...|+.+..+.+.-
T Consensus 173 ~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 173 QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 234456667789999999999999999999997776442 2334456778888999999999887776543
No 266
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.48 Score=56.64 Aligned_cols=106 Identities=19% Similarity=0.141 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000292 757 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 836 (1713)
Q Consensus 757 p~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~ 836 (1713)
.+.|.-|-.-|.-|+.-.+|..|+..|.++|..- + .|..-.+..|.|-|-+....|+|..|+.-..+|+.+
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k--c--~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----- 148 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK--C--ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----- 148 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc--C--CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 3578888889999999999999999999998752 1 233345688999999999999999999999999975
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 837 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 837 G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
.|..+.+++.-|.++..+.++.+|..|+++.+.+.
T Consensus 149 ---~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ---KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ---CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45667889999999999999999999999988775
No 267
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.38 E-value=2.3 Score=50.50 Aligned_cols=144 Identities=19% Similarity=0.130 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q 000292 719 RQLLESSKTALDK----GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDIN 790 (1713)
Q Consensus 719 ~~LlelA~~~l~q----G~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~----lGd~deAle~~~KAL~I~ 790 (1713)
...+.++..+... .+..+|..+|+.+... ..+.+.+.||.+|.. ..++.+|..+|++|...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~- 142 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL- 142 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-
Confidence 3444445554432 3467788888744332 234577779999887 45899999999999874
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCC
Q 000292 791 ERELGLDHPDTMKSYGDLAVFYYRLQ-------HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGN 859 (1713)
Q Consensus 791 Er~lG~Dhp~ta~ay~nLA~vy~~lG-------~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~----lG~ 859 (1713)
| ++.-..+..+||.+|..-. +...|+.+|.+|... .+ ..+..++|.+|.. ..+
T Consensus 143 ----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~-------~~---~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 143 ----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-------GN---PDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred ----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-------cC---HHHHHHHHHHHHcCCCCCcC
Confidence 2 2221455788888887652 223566666666553 23 4567788988864 348
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 000292 860 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 900 (1713)
Q Consensus 860 ~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lG 900 (1713)
+.+|..||.+|-+.- + ....+.++ ++...|
T Consensus 207 ~~~A~~wy~~Aa~~g-------~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 207 LKKAFRWYKKAAEQG-------D---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHHCC-------C---HHHHHHHH-HHHhcC
Confidence 899999999987652 1 45667777 555555
No 268
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.25 E-value=0.16 Score=40.06 Aligned_cols=30 Identities=33% Similarity=0.607 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000292 760 AGAYSLLAVVLYHTGDFNQATIYQQKALDI 789 (1713)
Q Consensus 760 A~ay~~LA~vy~~lGd~deAle~~~KAL~I 789 (1713)
+.+++.+|.+|+.+|++++|+.++++++.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999987
No 269
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=2.7 Score=49.47 Aligned_cols=149 Identities=11% Similarity=0.005 Sum_probs=93.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH----HHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 000292 765 LLAVVLYHTGDFNQATIYQQKALDI----NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 840 (1713)
Q Consensus 765 ~LA~vy~~lGd~deAle~~~KAL~I----~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dh 840 (1713)
.+|+-.....++++|+..|.+.+.- -+++. .+.-.+..+|+.+|...|++..--+......+.+.....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~----nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk--- 80 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL----NEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK--- 80 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh----hHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc---
Confidence 3555556667777777777666543 11111 123356789999999999998888888887777766532
Q ss_pred hhHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 841 PNTAATYINVAMME-EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 919 (1713)
Q Consensus 841 P~~a~a~~NLA~iy-~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~ 919 (1713)
|.+..+...|-..+ .....++.-+..+...++...+- .........-..+..+|...|.|.+|+......+.-+++.
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY 158 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 33443333333322 23455677777777766655331 1111122334567788999999999999999888888776
Q ss_pred cCC
Q 000292 920 LGP 922 (1713)
Q Consensus 920 LG~ 922 (1713)
-+.
T Consensus 159 DDK 161 (421)
T COG5159 159 DDK 161 (421)
T ss_pred cCc
Confidence 433
No 270
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=9.1 Score=51.57 Aligned_cols=237 Identities=14% Similarity=0.025 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh----
Q 000292 760 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT---- 835 (1713)
Q Consensus 760 A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i---- 835 (1713)
...|..||.+....|...+|++-|-|| |+| ..|.+.-....+.|.|++-.+|+.-|..-.+..
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH
Confidence 357888999999999999999988776 222 456677777788888888888888776654331
Q ss_pred -------------------cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 000292 836 -------------------CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 896 (1713)
Q Consensus 836 -------------------~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay 896 (1713)
.|+++..+ -.+|.-+...|.|+.|.-+|. ....+..||..+
T Consensus 1171 eLi~AyAkt~rl~elE~fi~gpN~A~i----~~vGdrcf~~~~y~aAkl~y~----------------~vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFIAGPNVANI----QQVGDRCFEEKMYEAAKLLYS----------------NVSNFAKLASTL 1230 (1666)
T ss_pred HHHHHHHHhchHHHHHHHhcCCCchhH----HHHhHHHhhhhhhHHHHHHHH----------------HhhhHHHHHHHH
Confidence 12221111 112333333333333333222 122355677888
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHH
Q 000292 897 SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINP 976 (1713)
Q Consensus 897 ~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~ 976 (1713)
..+|+|..|+...++|-.+. + +-....+-...+.+..++.+ +... .--++-+..+-.
T Consensus 1231 V~LgeyQ~AVD~aRKAns~k----------t-WK~VcfaCvd~~EFrlAQiC--GL~i----------ivhadeLeeli~ 1287 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKANSTK----------T-WKEVCFACVDKEEFRLAQIC--GLNI----------IVHADELEELIE 1287 (1666)
T ss_pred HHHHHHHHHHHHhhhccchh----------H-HHHHHHHHhchhhhhHHHhc--CceE----------EEehHhHHHHHH
Confidence 88899999988877765331 1 11112222333333333322 1110 011233566777
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhhcccccccccCCCCCCCCccccCCCCchhhhHHhhhhhc
Q 000292 977 SHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESSDEETHAPEPESDTDVNQGSSIPFQQQELVVEESA 1056 (1713)
Q Consensus 977 ~y~~qGdyeEAl~yyeKALeL~dSl~q~n~ea~~eIa~LEikyet~kKEk~I~~L~~~k~~~e~~~~~~~~~~~~~~~~~ 1056 (1713)
.|...|-+++-+..++.++-+.+.- ...--+++-|=.+|+-++--..+++--..=.+-+-.-..||++-|.+--..
T Consensus 1288 ~Yq~rGyFeElIsl~Ea~LGLERAH----MgmfTELaiLYskykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfL 1363 (1666)
T KOG0985|consen 1288 YYQDRGYFEELISLLEAGLGLERAH----MGMFTELAILYSKYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFL 1363 (1666)
T ss_pred HHHhcCcHHHHHHHHHhhhchhHHH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999888775542 122234555555665554322221110000000002256777777764333
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.26 E-value=0.3 Score=41.57 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 000292 761 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 810 (1713)
Q Consensus 761 ~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~ 810 (1713)
.++..||.+|..+|++++|+.+|++++.. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 36788999999999999999999999986 4555666666664
No 272
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=92.22 E-value=6.6 Score=56.02 Aligned_cols=156 Identities=20% Similarity=0.085 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC----C----------------
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG----D---------------- 775 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lG----d---------------- 775 (1713)
..++..-.+|..++..|.+.+|+..|.+|+.+++.. .|+...|.|+-.++.+...++ +
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 346777777999999999999999999999998875 677777888777765443221 1
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHHhcC---CCCchh--HHHHHHHHHHHHH
Q 000292 776 ------------------------------------FNQATIYQQKALDINERELG---LDHPDT--MKSYGDLAVFYYR 814 (1713)
Q Consensus 776 ------------------------------------~deAle~~~KAL~I~Er~lG---~Dhp~t--a~ay~nLA~vy~~ 814 (1713)
...=...+.+++.+|.+... ...|.. ..+...++.++..
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence 11112356666666666531 112332 3556667777777
Q ss_pred cC--------------------ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 815 LQ--------------------HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 815 lG--------------------~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
+. .-.++..++.+|+.+..... +..+.+.+|..+|.+|..+|-.-++--+++.++-.+
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 77 67888889999988754322 345678899999999999999988888888887766
Q ss_pred H
Q 000292 875 Q 875 (1713)
Q Consensus 875 e 875 (1713)
.
T Consensus 476 ~ 476 (1185)
T PF08626_consen 476 V 476 (1185)
T ss_pred c
Confidence 3
No 273
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=4.4 Score=50.23 Aligned_cols=189 Identities=14% Similarity=-0.029 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
.+.++..|.++..+.++..|..++++++-.+... -.....+.++..++.++..-+..-.++.+.-.++...... ..|
T Consensus 273 vE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~--~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey-~ld 349 (482)
T KOG4322|consen 273 VENLCRFAHILHADEQVSYAYALLNKLMVQCDKG--CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY-SLD 349 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh-ccc
Confidence 4566778888888889999999998877654332 2345567788889999998888888888888877765543 122
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT-----AATYINVAMMEEGLGNVHVALRYLHKALK 872 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~-----a~a~~NLA~iy~~lG~~eeAle~lekALe 872 (1713)
...+..-.+||..+..+|..++|+..+..|+.......|-+.... +.++..-+..+ ...+.+.+.+++++|-.
T Consensus 350 -yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~~ 427 (482)
T KOG4322|consen 350 -YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQS 427 (482)
T ss_pred -hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHHH
Confidence 223455678899999999999999999999988765444322111 11111111122 45567888999999988
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH---HHHHHHHHH
Q 000292 873 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPL---SVQHEQTTL 913 (1713)
Q Consensus 873 i~ek~~G~d~~~tA~a~~nLA~ay~~lGd~ee---Ale~lekAL 913 (1713)
++.++ .-|...+.+++-+|..|-..|+.++ +...+++++
T Consensus 428 ~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~ 469 (482)
T KOG4322|consen 428 IFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAW 469 (482)
T ss_pred HHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 88776 4567788888999999999998754 334444444
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.09 E-value=0.28 Score=38.65 Aligned_cols=32 Identities=6% Similarity=0.063 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHh
Q 000292 968 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 999 (1713)
Q Consensus 968 aelL~~LA~~y~~qGdyeEAl~yyeKALeL~d 999 (1713)
++++..+|.+|..+|++++|+.+|++++++..
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35789999999999999999999999999864
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.91 E-value=0.29 Score=38.71 Aligned_cols=31 Identities=39% Similarity=0.573 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000292 760 AGAYSLLAVVLYHTGDFNQATIYQQKALDIN 790 (1713)
Q Consensus 760 A~ay~~LA~vy~~lGd~deAle~~~KAL~I~ 790 (1713)
+.+|..+|.+|..+|++++|+.+|++++++.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4678999999999999999999999999985
No 276
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.90 E-value=12 Score=50.29 Aligned_cols=118 Identities=22% Similarity=0.116 Sum_probs=81.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 000292 729 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 808 (1713)
Q Consensus 729 l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nL 808 (1713)
+..+++.+|+....+.++. ||....+...-|.++.++|+.++|..++ +++.. .+.+ .-..+--|
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~L-e~~~~----~~~~---D~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLL-EALYG----LKGT---DDLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHH-hhhcc----CCCC---chHHHHHH
Confidence 4667888888888777765 5666566666788999999999999443 44432 1223 33456678
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 809 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 809 A~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
-.||..++++++|..+|++++.. .|. -..+..+=++|.+.+.|.+-. +-|++++
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQ---kaa~~Ly 137 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQ---KAALQLY 137 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 89999999999999999999864 233 344555666777777765432 2455555
No 277
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.89 E-value=0.15 Score=41.29 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHH
Q 000292 782 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALK 823 (1713)
Q Consensus 782 ~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe 823 (1713)
+|++||++ +|+...+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 36788876 68889999999999999999999963
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.85 E-value=6.6 Score=50.85 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=24.1
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 829 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerAL 829 (1713)
|+...-.++.++|..+..+..|++|.+||.+.-
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455778888888888888888888877653
No 279
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.76 E-value=1.9 Score=56.42 Aligned_cols=150 Identities=18% Similarity=0.148 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 000292 733 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-----GDFNQATIYQQKALDINERELGLDHPDTMKSYGD 807 (1713)
Q Consensus 733 ~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~l-----Gd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~n 807 (1713)
....|..+++.+... ....+...+|.+|+.- .+.+.|+.+++.|..-+.+.. +.....+++.
T Consensus 227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~ 293 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYG 293 (552)
T ss_pred hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccH
Confidence 456777777776654 1234556677777654 689999999999987322210 1113347788
Q ss_pred HHHHHHHcC-----ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhcC
Q 000292 808 LAVFYYRLQ-----HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG---NVHVALRYLHKALKCNQRLLG 879 (1713)
Q Consensus 808 LA~vy~~lG-----~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG---~~eeAle~lekALei~ek~~G 879 (1713)
||.+|.... ++..|+.+|.+|-.+ ++| .+.+.+|.+|..-. ++..|.++|..|...-
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----- 358 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----- 358 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhc-------CCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-----
Confidence 999998854 678899999888764 233 34567888887655 5678888888876532
Q ss_pred CCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 000292 880 PDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 880 ~d~~~tA~a~~nLA~ay~~----lGd~eeAle~lekALeI 915 (1713)
...+++++|.+|.. .-+...|..++++|.+.
T Consensus 359 -----~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 359 -----HILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred -----ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 23456677877764 24678888888887643
No 280
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.59 E-value=0.38 Score=38.08 Aligned_cols=31 Identities=6% Similarity=-0.005 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHh
Q 000292 969 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 999 (1713)
Q Consensus 969 elL~~LA~~y~~qGdyeEAl~yyeKALeL~d 999 (1713)
+++..+|.+|..+|++++|+.+|++++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999875
No 281
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.58 E-value=0.2 Score=60.00 Aligned_cols=98 Identities=23% Similarity=0.145 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
+....-.|..++..|.++.|+++|..|+.+ ++..+..|...|.++..++....|+.-|..|+.+
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-------- 177 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-------- 177 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------
Confidence 334555567778899999999999999876 6778889999999999999999999999999887
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
+++++..|-.-+.....+|+|++|..++..|.++
T Consensus 178 n~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 178 NPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred CcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 5677788888888899999999999999998875
No 282
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=91.54 E-value=13 Score=47.04 Aligned_cols=186 Identities=13% Similarity=-0.028 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHH
Q 000292 804 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-------HVALRYLHKALKCNQR 876 (1713)
Q Consensus 804 ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~-------eeAle~lekALei~ek 876 (1713)
.+..||.+++.+++|+.|..+|+.+..-+.. ....-..+.++-.+|.++...+.. +....+++.|+..+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~--Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN--DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh--chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 4567999999999999999999988876532 111222355555666666666533 4778889998888866
Q ss_pred hcC---CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHh
Q 000292 877 LLG---PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR---TQDAAAWLEYFESKAFEQQEAARN 950 (1713)
Q Consensus 877 ~~G---~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~---t~ea~~~La~L~qka~e~AeAl~~ 950 (1713)
.-. ........+....+.++...|.+.+|...+-+..... + ..+.. ..-.+..+++.. .
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~---l-~~~l~~~~~alllE~~a~~~-----------~ 352 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEI---L-ESDLRPFGSALLLEQAAYCY-----------A 352 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH---H-hhhhhhHhhHHHHHHHHHhh-----------c
Confidence 311 1122445667777888889999888877665554331 1 11111 111111111111 0
Q ss_pred cCCCCchhhhhcC-CccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 000292 951 GTRKPDASIASKG-HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTS 1009 (1713)
Q Consensus 951 ~~~~~~~a~a~~~-~~svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~q~n~ea~ 1009 (1713)
...... ...... .+..+--+..-|.-|...|+...|+..|.+++.+++... +..+.
T Consensus 353 ~~~~~~-~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~~--W~~~~ 409 (414)
T PF12739_consen 353 SLRSNR-PSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGKG--WSLIE 409 (414)
T ss_pred ccccCC-CCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCC--CCCcc
Confidence 000000 000000 112222334456678999999999999999999998655 55443
No 283
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.41 E-value=4.2 Score=53.24 Aligned_cols=120 Identities=21% Similarity=0.161 Sum_probs=86.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 000292 731 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-----DFNQATIYQQKALDINERELGLDHPDTMKSY 805 (1713)
Q Consensus 731 qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lG-----d~deAle~~~KAL~I~Er~lG~Dhp~ta~ay 805 (1713)
..+.+.|+.+|+.+..-+.... +.....+++.||.+|.... ++..|+.+|.+|-.. ....+.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~ 328 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAA---TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQ 328 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHH---hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHH
Confidence 3588999999999987322110 1112347788999998854 678899999888664 234567
Q ss_pred HHHHHHHHHcC---ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 000292 806 GDLAVFYYRLQ---HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKC 873 (1713)
Q Consensus 806 ~nLA~vy~~lG---~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~----lG~~eeAle~lekALei 873 (1713)
+.||.+|..-. ++..|.+||..|... .| ..+++++|.+|.. ..+...|..||.+|-+.
T Consensus 329 ~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-------G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 329 YLLGVLYETGTKERDYRRAFEYYSLAAKA-------GH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHcCCccccHHHHHHHHHHHHHc-------CC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 88999888766 567899999888763 23 4567778888874 34788999999988765
No 284
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.21 E-value=10 Score=47.17 Aligned_cols=169 Identities=18% Similarity=0.137 Sum_probs=98.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 000292 726 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH---TGDFNQATIYQQKALDINERELGLDHPDTM 802 (1713)
Q Consensus 726 ~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~---lGd~deAle~~~KAL~I~Er~lG~Dhp~ta 802 (1713)
..|....+|+.-+.+.+..-.+- ..+-.....+...+|.++.+ .|+.++|+..+..++.- +.....
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p----~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-------~~~~~~ 217 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALP----TCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-------DENPDP 217 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccC----ccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-------cCCCCh
Confidence 44666667776666665433320 00112233455667888888 89999999988887543 233445
Q ss_pred HHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H
Q 000292 803 KSYGDLAVFYYRL---------QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL-K 872 (1713)
Q Consensus 803 ~ay~nLA~vy~~l---------G~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekAL-e 872 (1713)
.+|..+|.+|-.+ ..+++|+.+|.++.++- ++ ...=.|++.++...|.-.+...-+++.. .
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--------~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~ 288 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--------PD-YYSGINAATLLMLAGHDFETSEELRKIGVK 288 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--------cc-ccchHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 6777788777543 23466666666666542 11 1223567777777776444443333333 2
Q ss_pred HHHHhcCC----CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 873 CNQRLLGP----DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 873 i~ek~~G~----d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
+. .+.|. +.......+..++.+....|++++|.+.+++++..
T Consensus 289 l~-~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 289 LS-SLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HH-HHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 22 22221 11222233455677888899999999999988854
No 285
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.19 E-value=0.39 Score=40.84 Aligned_cols=42 Identities=29% Similarity=0.418 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000292 803 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 852 (1713)
Q Consensus 803 ~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~ 852 (1713)
.++..||.+|..+|++++|+++|+++++. +|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 35788999999999999999999999986 3444455555553
No 286
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.18 E-value=0.97 Score=50.31 Aligned_cols=80 Identities=9% Similarity=0.030 Sum_probs=52.6
Q ss_pred ChhHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC----ChHHHHHHHHHH
Q 000292 840 HPNTAATYINVAMMEEGLGNV---HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME----AYPLSVQHEQTT 912 (1713)
Q Consensus 840 hP~~a~a~~NLA~iy~~lG~~---eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lG----d~eeAle~lekA 912 (1713)
.|..+..+++-|.++..+.++ .++.++++.|+.-+++.+. -.|....++++||.+|..++ +..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 466678888888888877554 4466666666655554432 12456678889999998654 456788888888
Q ss_pred HHHHHHhc
Q 000292 913 LQILRAKL 920 (1713)
Q Consensus 913 LeI~kk~L 920 (1713)
...|++..
T Consensus 100 ~~~FqkAv 107 (186)
T PF06552_consen 100 TEYFQKAV 107 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777643
No 287
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.16 E-value=6.5 Score=46.68 Aligned_cols=149 Identities=16% Similarity=0.075 Sum_probs=100.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000292 729 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHPDTMKS 804 (1713)
Q Consensus 729 l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~l----Gd~deAle~~~KAL~I~Er~lG~Dhp~ta~a 804 (1713)
...+++..|...+.++-.. + .+.....++.+|..- .+..+|+.+|+++.. .....+
T Consensus 52 ~~~~~~~~a~~~~~~a~~~-----~-----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a 111 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL-----G-----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEA 111 (292)
T ss_pred cccccHHHHHHHHHHhhhc-----C-----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHH
Confidence 3566777777777776552 1 114566677776653 467888888885533 234567
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHH
Q 000292 805 YGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-------NVHVALRYLHKALKC 873 (1713)
Q Consensus 805 y~nLA~vy~~----lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG-------~~eeAle~lekALei 873 (1713)
.++||.+|.. ..++.+|..+|.+|.+. .++.-..+..++|.+|..-. +...|+.+|.+|-..
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 7889999987 55899999999999874 23322445677888887642 122577777766554
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 000292 874 NQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQ 914 (1713)
Q Consensus 874 ~ek~~G~d~~~tA~a~~nLA~ay~~----lGd~eeAle~lekALe 914 (1713)
. ...+...||.+|.. ..++.+|..+|++|.+
T Consensus 185 ~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 185 G----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred c----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3 34567778877764 3478899999988863
No 288
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=5.2 Score=48.31 Aligned_cols=227 Identities=10% Similarity=-0.010 Sum_probs=123.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-CCch----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 000292 766 LAVVLYHTGDFNQATIYQQKALDINERELGL-DHPD----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 840 (1713)
Q Consensus 766 LA~vy~~lGd~deAle~~~KAL~I~Er~lG~-Dhp~----ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dh 840 (1713)
.++......++++++..+.+.+.-.+ |. .+.. .-.+..+||..|...|++++-..+.......+..+. -
T Consensus 10 ~~~~~~~~~~~~~~~~il~~vl~~~~---~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---K 83 (411)
T KOG1463|consen 10 RAQNLVSVNQVEEAINILKSVLNKAQ---GASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---K 83 (411)
T ss_pred HHHHhcccchhhhhHHHHHHHhhhhc---cccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---h
Confidence 33334444555666666665554311 11 1111 124678899999999999888888777777665542 2
Q ss_pred hhHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 841 PNTAATYINVAMME-EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 919 (1713)
Q Consensus 841 P~~a~a~~NLA~iy-~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~ 919 (1713)
+..+.+...|-.+. ..-+..+.-+..+.++++...+- ......-..-..|..+|...++|.+|+......+.-+++.
T Consensus 84 akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e--kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl 161 (411)
T KOG1463|consen 84 AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE--KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL 161 (411)
T ss_pred HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 33333333333333 23344556666666666655331 0111112334567889999999999999998888877776
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHH
Q 000292 920 LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINP-SHDTKGRNVSTLKRKTYVAKVK 998 (1713)
Q Consensus 920 LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~-~y~~qGdyeEAl~yyeKALeL~ 998 (1713)
-+.........+..-.++..+....+++.....+... .+..-.+.+...+....+ ++....+|.-|+.||-.|.+-+
T Consensus 162 DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~A--naiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 162 DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTA--NAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhh--cccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccc
Confidence 4433222223333333333333333332221111111 011111122223333333 3455689999999999888888
Q ss_pred hhhc
Q 000292 999 GNFY 1002 (1713)
Q Consensus 999 dSl~ 1002 (1713)
+++.
T Consensus 240 ~s~~ 243 (411)
T KOG1463|consen 240 DSLD 243 (411)
T ss_pred cccC
Confidence 8776
No 289
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=91.04 E-value=0.19 Score=62.56 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
+..+-..|..++....|+.|+.+|.+|+.+ ++..|..+.+.+.++...++|..|+.-+.+|+++
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-------- 67 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL-------- 67 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------
Confidence 344455677788889999999999999987 6778888899999999999999999999999985
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
.|..+.+|+.-|.++..++++.+|+..|+....+
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 4888999999999999999999999888887664
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.76 E-value=0.21 Score=40.57 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHH
Q 000292 741 GTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT 780 (1713)
Q Consensus 741 lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAl 780 (1713)
|++|+++ +|..+.+|++||.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6778776 6888899999999999999999986
No 291
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.70 E-value=22 Score=44.12 Aligned_cols=151 Identities=17% Similarity=0.104 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 796 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv-~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~ 796 (1713)
+..++-....++.+.++.+|...-...+.-.... .-..+-..+.+|+.+..+|-..|+...-...+..-+... +++.
T Consensus 126 aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrh 203 (493)
T KOG2581|consen 126 AYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRH 203 (493)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcC
Confidence 3333333444566788888888877766542111 001133457889999999999999776666666555543 4555
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
|....+...+.|=..|...+.|+.|..+..++..-- .....+.+..++.+|.+..-+++|..|.+++.+|++..
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 666666677777888888888888887766654210 01123667888889999999999999999999999865
No 292
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=90.61 E-value=9.1 Score=48.40 Aligned_cols=176 Identities=14% Similarity=-0.059 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHH
Q 000292 720 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF-------NQATIYQQKALDINER 792 (1713)
Q Consensus 720 ~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~-------deAle~~~KAL~I~Er 792 (1713)
.+-.+|..++..|+|+-|...|+.+..-+..- .-....|.++-..|.+++.++.. +....+++.|+..+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 34455788889999999999999888766421 12234567777777777777744 3777888888888877
Q ss_pred hcC---CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHH--HHCCCHHHHH
Q 000292 793 ELG---LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN---TAATYINVAMME--EGLGNVHVAL 864 (1713)
Q Consensus 793 ~lG---~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~---~a~a~~NLA~iy--~~lG~~eeAl 864 (1713)
... ........+....+.++...+.+.+|...+-++...... .... .+.++-.+|.+| .....
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~----- 358 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNR----- 358 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCC-----
Confidence 321 122355677788888899999998888777766654210 1111 233444444444 11000
Q ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000292 865 RYLHKALKCNQRLLG-PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 917 (1713)
Q Consensus 865 e~lekALei~ek~~G-~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~k 917 (1713)
...+ ......+.-+..-|.-|...|+...|+.+|.+|+.++.
T Consensus 359 -----------~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 359 -----------PSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred -----------CCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 0000 00123333344446788999999999999999999886
No 293
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.34 E-value=56 Score=42.79 Aligned_cols=103 Identities=14% Similarity=0.035 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 000292 762 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 841 (1713)
Q Consensus 762 ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP 841 (1713)
.+.+-|.-+++..+|..|+++|...+..+-. ...+...+....+|+.||..+.+.+.|++++++|-+. .|
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--------d~ 425 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--------DR 425 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------cc
Confidence 3445677778889999999999999876432 1123345788899999999999999999999999764 23
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 842 NTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 842 ~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
....+...+-.+....++-++|+.++...+...
T Consensus 426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 333334445556667788899999888777654
No 294
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.29 E-value=5.2 Score=47.76 Aligned_cols=128 Identities=18% Similarity=0.143 Sum_probs=85.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHH---------------HH
Q 000292 765 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKR---------------AL 829 (1713)
Q Consensus 765 ~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yer---------------AL 829 (1713)
.-+.-....|++.+|...+..++... +....+...||.+|...|+.+.|...+.. -+
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35566778899999999999999873 34467788899999999999888876653 23
Q ss_pred HHHHHhcCC-----------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 000292 830 YLLHLTCGP-----------SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 898 (1713)
Q Consensus 830 eL~~~i~G~-----------dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~ 898 (1713)
++....-.. ..|+...+-+.+|..|...|++++|++.+-..++.. .|.... ...-.|-.++..
T Consensus 211 ~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d---~~~~d~---~~Rk~lle~f~~ 284 (304)
T COG3118 211 ELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD---RGFEDG---EARKTLLELFEA 284 (304)
T ss_pred HHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---ccccCc---HHHHHHHHHHHh
Confidence 443332111 135456677889999999999999999876555442 232222 223334455555
Q ss_pred cCChHHHH
Q 000292 899 MEAYPLSV 906 (1713)
Q Consensus 899 lGd~eeAl 906 (1713)
.|.-+.+.
T Consensus 285 ~g~~Dp~~ 292 (304)
T COG3118 285 FGPADPLV 292 (304)
T ss_pred cCCCCHHH
Confidence 66444433
No 295
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.08 E-value=13 Score=46.27 Aligned_cols=148 Identities=18% Similarity=0.073 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---------------------CChhHHHHHHHHHHHHHhcCCH
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---------------------YHRMTAGAYSLLAVVLYHTGDF 776 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~---------------------dhp~~A~ay~~LA~vy~~lGd~ 776 (1713)
...|+.++.++..+|+++.|-+++++||-.++..+.+ ++...-.+++.....+.+.|.+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 5678888999999999999999999999876643211 2334455667777888889999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000292 777 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 856 (1713)
Q Consensus 777 deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~ 856 (1713)
..|+++++-.+.+ .++ .+-..+++.|=.+..+.++|+--+++++..........-..-|. ..+.+|.++..
T Consensus 120 rTAlE~~KlLlsL-----dp~-~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn---~a~S~aLA~~~ 190 (360)
T PF04910_consen 120 RTALEWCKLLLSL-----DPD-EDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN---FAFSIALAYFR 190 (360)
T ss_pred HHHHHHHHHHHhc-----CCC-CCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc---HHHHHHHHHHH
Confidence 9999998877765 222 03344555666666777888777777665544211000001233 34567888888
Q ss_pred CCCH---------------HHHHHHHHHHHHHH
Q 000292 857 LGNV---------------HVALRYLHKALKCN 874 (1713)
Q Consensus 857 lG~~---------------eeAle~lekALei~ 874 (1713)
+++- +.|...+++|+..+
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 8887 88999999998775
No 296
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=89.66 E-value=55 Score=44.40 Aligned_cols=162 Identities=19% Similarity=0.149 Sum_probs=93.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 000292 724 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 803 (1713)
Q Consensus 724 lA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ 803 (1713)
.|..+.++|+.++|..++ +++... +.. .-..+..|-.+|..++++++|..+|++++..+ |. -.
T Consensus 49 kaLsl~r~gk~~ea~~~L-e~~~~~----~~~---D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-ee 111 (932)
T KOG2053|consen 49 KALSLFRLGKGDEALKLL-EALYGL----KGT---DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--------PS-EE 111 (932)
T ss_pred HHHHHHHhcCchhHHHHH-hhhccC----CCC---chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HH
Confidence 467788999999999544 344331 222 23466778899999999999999999998752 44 44
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHHHHhcCCC
Q 000292 804 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR--YLHKALKCNQRLLGPD 881 (1713)
Q Consensus 804 ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle--~lekALei~ek~~G~d 881 (1713)
.++.+=.+|.+.+.|.+-. +-|+++++.. + ..+.. .|.-+..+++.....+.+.. ++--|-+.+++.+...
T Consensus 112 ll~~lFmayvR~~~yk~qQ---kaa~~LyK~~-p-k~~yy--fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~ 184 (932)
T KOG2053|consen 112 LLYHLFMAYVREKSYKKQQ---KAALQLYKNF-P-KRAYY--FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK 184 (932)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhC-C-cccch--HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC
Confidence 5566666777777765432 2344444432 2 22322 34445666666655555444 1111112222222221
Q ss_pred -cHH-HHHHHHHHHHHHHHcCChHHHHHHHH
Q 000292 882 -HIQ-TAASYHAIAIALSLMEAYPLSVQHEQ 910 (1713)
Q Consensus 882 -~~~-tA~a~~nLA~ay~~lGd~eeAle~le 910 (1713)
... .+.. ...-.++..+|++++|++.+.
T Consensus 185 gk~~s~aE~-~Lyl~iL~~~~k~~eal~~l~ 214 (932)
T KOG2053|consen 185 GKIESEAEI-ILYLLILELQGKYQEALEFLA 214 (932)
T ss_pred CccchHHHH-HHHHHHHHhcccHHHHHHHHH
Confidence 111 1221 112346677899999988774
No 297
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=89.60 E-value=2.3 Score=50.81 Aligned_cols=129 Identities=17% Similarity=0.150 Sum_probs=84.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 000292 725 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDHPDTMK 803 (1713)
Q Consensus 725 A~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~-lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ 803 (1713)
.+.....+..+.|..+|.+|+.. ......+|...|.+-+. .++.+.|...|+.++..+ ..+...
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~~~~-- 72 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSDPDF-- 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-HHH--
T ss_pred HHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCCHHH--
Confidence 34445555689999999999631 22334567778888666 566677999999999875 223333
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 804 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 804 ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
+.....++...++.+.|..+|++++... .. ....-.+|......-...|+++......+++.+++
T Consensus 73 -~~~Y~~~l~~~~d~~~aR~lfer~i~~l----~~-~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 73 -WLEYLDFLIKLNDINNARALFERAISSL----PK-EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp -HHHHHHHHHHTT-HHHHHHHHHHHCCTS----SC-HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHhCcHHHHHHHHHHHHHhc----Cc-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3344467788999999999999998641 11 11123455556666667788887777777777665
No 298
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.26 E-value=2.9 Score=50.86 Aligned_cols=63 Identities=19% Similarity=0.140 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHH
Q 000292 715 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN 777 (1713)
Q Consensus 715 s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~d 777 (1713)
...+..++..|+.++.+++|+.|...|.+|..++..+||..|.+...+++..|..++..++++
T Consensus 38 ~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e 100 (400)
T KOG4563|consen 38 EKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEE 100 (400)
T ss_pred HHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778899999999999999999999999999999999999999999999999998876654
No 299
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.80 E-value=4.2 Score=47.68 Aligned_cols=91 Identities=16% Similarity=0.010 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH
Q 000292 734 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 813 (1713)
Q Consensus 734 ~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~ 813 (1713)
-...++++.+|+..+.+. ........+...||..|+..|+|++|+.+++.+...+.+ ..-..-...++..|..|+.
T Consensus 154 s~~iI~lL~~A~~~f~~~--~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--egW~~l~~~~l~~l~~Ca~ 229 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKY--GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR--EGWWSLLTEVLWRLLECAK 229 (247)
T ss_pred HHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHH
Confidence 345688888888887765 235566778889999999999999999999999887765 2334445678889999999
Q ss_pred HcCChHHHHHHHHHH
Q 000292 814 RLQHTELALKYVKRA 828 (1713)
Q Consensus 814 ~lG~~eeALe~yerA 828 (1713)
..|+.+..+.+.-+.
T Consensus 230 ~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 230 RLGDVEDYLTTSLEL 244 (247)
T ss_pred HhCCHHHHHHHHHHH
Confidence 999998877665443
No 300
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=88.58 E-value=13 Score=47.52 Aligned_cols=175 Identities=19% Similarity=0.145 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHHHHHhc
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIY---QQKALDINEREL 794 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~---~~KAL~I~Er~l 794 (1713)
+..+...+.++...|+...|-.+-.++..+++.... ........+|+..-+++++..- +++.-.++.+.+
T Consensus 286 s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~-------~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll 358 (656)
T KOG1914|consen 286 SMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE-------GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLL 358 (656)
T ss_pred HHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHH
Confidence 445555666777778776666666666655544321 1122233344444445554443 444445555544
Q ss_pred CCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHH
Q 000292 795 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM-EEGLGNVHVALRYLHKALKC 873 (1713)
Q Consensus 795 G~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~i-y~~lG~~eeAle~lekALei 873 (1713)
+..+.+...+|.++-.+-.+..-.+.|...|.+|.+.-. +..|..++ -|.+ |...++..-|.+.|+-.|+.
T Consensus 359 ~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r---~~hhVfVa-----~A~mEy~cskD~~~AfrIFeLGLkk 430 (656)
T KOG1914|consen 359 KIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR---TRHHVFVA-----AALMEYYCSKDKETAFRIFELGLKK 430 (656)
T ss_pred hhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC---CcchhhHH-----HHHHHHHhcCChhHHHHHHHHHHHh
Confidence 444555555666666666666678888888888876422 22233222 3333 56789999999999988876
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 874 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 874 ~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
+ .+.+.....| ...+..+++-..|..+|++++.-
T Consensus 431 f-----~d~p~yv~~Y---ldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 431 F-----GDSPEYVLKY---LDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred c-----CCChHHHHHH---HHHHHHhCcchhHHHHHHHHHhc
Confidence 5 4556555555 45667788888899888887743
No 301
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.42 E-value=11 Score=46.88 Aligned_cols=74 Identities=19% Similarity=0.098 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHhcCCCC-----------hhH---HHHHHHHHHHHHHCCCHHHHHHH
Q 000292 804 SYGDLAVFYYRLQHT---ELALKYVKRALYLLHLTCGPSH-----------PNT---AATYINVAMMEEGLGNVHVALRY 866 (1713)
Q Consensus 804 ay~nLA~vy~~lG~~---eeALe~yerALeL~~~i~G~dh-----------P~~---a~a~~NLA~iy~~lG~~eeAle~ 866 (1713)
.-..+-+||+.+.+. ..|..-+.+|..-+...||.++ |.. ...+..-|.+.+.+|+-++|.++
T Consensus 210 lnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~ 289 (568)
T KOG2561|consen 210 LNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEA 289 (568)
T ss_pred hhcchhheehhhcccccCChHHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 344567888887764 6777777777777776666553 433 34566779999999999999999
Q ss_pred HHHHHHHHHHh
Q 000292 867 LHKALKCNQRL 877 (1713)
Q Consensus 867 lekALei~ek~ 877 (1713)
|+.|.....++
T Consensus 290 le~a~~~l~el 300 (568)
T KOG2561|consen 290 LESAHAKLLEL 300 (568)
T ss_pred HHHHHHHHHHe
Confidence 99998877554
No 302
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.27 E-value=13 Score=46.34 Aligned_cols=179 Identities=15% Similarity=0.013 Sum_probs=112.7
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 753 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 832 (1713)
Q Consensus 753 G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~ 832 (1713)
|.+-..-....+.-|.++....++.+|..+.+++.-...+ +........++..++.++..-+.--.++.+.-+++...
T Consensus 266 g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~ 343 (482)
T KOG4322|consen 266 GGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKR 343 (482)
T ss_pred cchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 3444444556666889999999999999888887654332 22223445677778888888888888888888888776
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHHcCChHHHHH
Q 000292 833 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI-----QTAASYHAIAIALSLMEAYPLSVQ 907 (1713)
Q Consensus 833 ~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~-----~tA~a~~nLA~ay~~lGd~eeAle 907 (1713)
... .-+. ..+.+-.++|..+..+|..+.|+..++.|+....-.-|-+.. -.+.++..-+.-+ ...+++.+..
T Consensus 344 sey-~ldy-l~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~ 420 (482)
T KOG4322|consen 344 SEY-SLDY-LEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPR 420 (482)
T ss_pred HHh-ccch-hhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHH
Confidence 653 2222 234556678999999999999999999999876432221111 0111221111111 4456677777
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000292 908 HEQTTLQILRAKLGPDDLRTQDAAAWLEYFE 938 (1713)
Q Consensus 908 ~lekALeI~kk~LG~dh~~t~ea~~~La~L~ 938 (1713)
++++|-.++.+. .-|....+.....++.+
T Consensus 421 ~L~~A~~~f~kL--~~he~ildv~yf~A~~y 449 (482)
T KOG4322|consen 421 YLDLAQSIFYKL--GCHEKILDVTYFSAYQY 449 (482)
T ss_pred HHHHHHHHHHHc--cchHHHHHHHHHHHHHH
Confidence 777777777654 33444444444444433
No 303
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=88.20 E-value=16 Score=52.32 Aligned_cols=228 Identities=14% Similarity=0.022 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHc---C--------------------
Q 000292 760 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL---Q-------------------- 816 (1713)
Q Consensus 760 A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~l---G-------------------- 816 (1713)
++..-.+|..|...|++.+|+..|..|+.+++. ..|+-..+.++-.++.+..-. |
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~--~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS--SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh--cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 445566899999999999999999999999877 356666666666555443211 1
Q ss_pred --------------------------------C-hHHHHHHHHHHHHHHHHhc---CCCChhH--HHHHHHHHHHHHHCC
Q 000292 817 --------------------------------H-TELALKYVKRALYLLHLTC---GPSHPNT--AATYINVAMMEEGLG 858 (1713)
Q Consensus 817 --------------------------------~-~eeALe~yerALeL~~~i~---G~dhP~~--a~a~~NLA~iy~~lG 858 (1713)
. ...=.+.+.+++.++.+.. ....|.+ ..+...++.++....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 0 1111234555665555542 1223332 455666777777766
Q ss_pred --------------------CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 859 --------------------NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 859 --------------------~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
.-.++..++.+|+.+....+ +..+....|..+|.+|..+|-.+++.-+++.++..+-.
T Consensus 400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~ 477 (1185)
T PF08626_consen 400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVP 477 (1185)
T ss_pred cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcc
Confidence 67788899999988764432 34566788999999999999999999999888877654
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhc--CCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000292 919 KLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASK--GHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 996 (1713)
Q Consensus 919 ~LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~--~~~svaelL~~LA~~y~~qGdyeEAl~yyeKALe 996 (1713)
.+...+......+..+...+ ...... ............ .......++..+-.+..+.|++..++.+.-..++
T Consensus 478 ~l~~~~~s~~~lL~~~~~~Y----gi~~~~--~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL~ 551 (1185)
T PF08626_consen 478 GLIHWHQSYRSLLEELCKGY----GISLDP--ESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLLR 551 (1185)
T ss_pred ccCCcchHHHHHHHHHhccC----cccCCc--cccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33111211111111111000 000000 000000000000 1112345666666677889999999888866655
Q ss_pred H
Q 000292 997 V 997 (1713)
Q Consensus 997 L 997 (1713)
-
T Consensus 552 ~ 552 (1185)
T PF08626_consen 552 T 552 (1185)
T ss_pred H
Confidence 3
No 304
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=88.09 E-value=9.1 Score=42.83 Aligned_cols=157 Identities=13% Similarity=0.129 Sum_probs=95.4
Q ss_pred cCCHHHHH-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000292 731 KGKLEDAV-TYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-----TGDFNQATIYQQKALDINERELGLDHPDTMKS 804 (1713)
Q Consensus 731 qG~~eeAl-e~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~-----lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~a 804 (1713)
.|+|-+++ .-|++|..+++..+... ..+...+.+|.-++. .+++..|++++..|.. .....+
T Consensus 40 LgdYlEgi~knF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~----------~n~~~a 107 (248)
T KOG4014|consen 40 LGDYLEGIQKNFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD----------ANIPQA 107 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc----------cCCHHH
Confidence 35555544 35677777777665432 234455556654432 3567888888888865 245677
Q ss_pred HHHHHHHHHHcC-----C--hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---------------------
Q 000292 805 YGDLAVFYYRLQ-----H--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG--------------------- 856 (1713)
Q Consensus 805 y~nLA~vy~~lG-----~--~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~--------------------- 856 (1713)
..++|++++.-. + ..+|++|+.+|-++- ...+.++|..+|..
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~ 177 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAEL 177 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhh
Confidence 888888887432 2 578888888886641 12333444444443
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHh
Q 000292 857 ---LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM----EAYPLSVQHEQTTLQILRAK 919 (1713)
Q Consensus 857 ---lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~l----Gd~eeAle~lekALeI~kk~ 919 (1713)
.++.+.|+++..+|.++. + ..+..|+.+.|..- .+.++|..+-.+|.+|.+..
T Consensus 178 ~~~~kDMdka~qfa~kACel~-------~---~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 178 GSLSKDMDKALQFAIKACELD-------I---PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred hhhhHhHHHHHHHHHHHHhcC-------C---hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 245566666665555442 2 34556667776542 36678888888888887664
No 305
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.01 E-value=3.7 Score=39.93 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 793 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~ 793 (1713)
.++..++.|.-++.+.+.++|+..+.++|.... +.++...++..|..+|...|+|.+++.+..+=+.+++..
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKIT-----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 366777888888899999999999999998742 345677888899999999999999999999888888764
No 306
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=87.95 E-value=11 Score=42.28 Aligned_cols=185 Identities=10% Similarity=0.037 Sum_probs=98.7
Q ss_pred cCCHHHHHH-HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000292 773 TGDFNQATI-YQQKALDINERELGLDHPDTMKSYGDLAVFYYR-----LQHTELALKYVKRALYLLHLTCGPSHPNTAAT 846 (1713)
Q Consensus 773 lGd~deAle-~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~-----lG~~eeALe~yerALeL~~~i~G~dhP~~a~a 846 (1713)
+|+|-+++. .|++|..+++.... ......+.+.+|..++. .+++..|+++|..|-.. + ...+
T Consensus 40 LgdYlEgi~knF~~A~kv~K~nCd--en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~-------n---~~~a 107 (248)
T KOG4014|consen 40 LGDYLEGIQKNFQAAVKVFKKNCD--ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA-------N---IPQA 107 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc--ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc-------C---CHHH
Confidence 456667765 78888888877543 33445666677766543 34677788887777542 2 3455
Q ss_pred HHHHHHHHHHC-----CC--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 847 YINVAMMEEGL-----GN--VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 919 (1713)
Q Consensus 847 ~~NLA~iy~~l-----G~--~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~ 919 (1713)
..++|.++..- ++ ..+|++|+.+|..+. .+.+.++|...|..- -+++.. + .
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~----------~~~aCf~LS~m~~~g--~~k~~t----~------a 165 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE----------DGEACFLLSTMYMGG--KEKFKT----N------A 165 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC----------CchHHHHHHHHHhcc--chhhcc----c------C
Confidence 66778777632 33 668888888887653 234556666655432 122111 0 1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHH----CCCHHHHHHHHHHHH
Q 000292 920 LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT----KGRNVSTLKRKTYVA 995 (1713)
Q Consensus 920 LG~dh~~t~ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~----qGdyeEAl~yyeKAL 995 (1713)
.|...+........+..-..++.+.+ +..... .......++...|.. -.+.++|..|-.+|+
T Consensus 166 p~~g~p~~~~~~~~~~kDMdka~qfa--~kACel------------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~ 231 (248)
T KOG4014|consen 166 PGEGKPLDRAELGSLSKDMDKALQFA--IKACEL------------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAK 231 (248)
T ss_pred CCCCCCcchhhhhhhhHhHHHHHHHH--HHHHhc------------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHH
Confidence 22222222222222221122222222 111100 111223344444432 357889999999999
Q ss_pred HHHhhhcCCC
Q 000292 996 KVKGNFYQDN 1005 (1713)
Q Consensus 996 eL~dSl~q~n 1005 (1713)
+|.+.+..+.
T Consensus 232 e~~~e~~k~~ 241 (248)
T KOG4014|consen 232 EIMEELRKND 241 (248)
T ss_pred HHHHHHHcCC
Confidence 9999987443
No 307
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=87.82 E-value=54 Score=38.73 Aligned_cols=188 Identities=14% Similarity=0.038 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 720 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDH 798 (1713)
Q Consensus 720 ~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~-lGd~deAle~~~KAL~I~Er~lG~Dh 798 (1713)
.+..+|.++-+.++|++.+.+..++...... . .....=.+.|+.+|-. .|....+...... +...+...|.
T Consensus 3 ~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~---~--eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~-- 74 (244)
T smart00101 3 ENVYMAKLAEQAERYEEMVEFMEKVAKTVDS---E--ELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGN-- 74 (244)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC---c--cCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCc--
Confidence 3456788888999999999999987764210 0 1112233445555433 2444444444332 2221111111
Q ss_pred chhHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHhcCCCC--hh-HHHHHHHHHHHHHH-----CCC-----HHHHH
Q 000292 799 PDTMKSYGDLAVFYYRLQHT-ELALKYVKRALYLLHLTCGPSH--PN-TAATYINVAMMEEG-----LGN-----VHVAL 864 (1713)
Q Consensus 799 p~ta~ay~nLA~vy~~lG~~-eeALe~yerALeL~~~i~G~dh--P~-~a~a~~NLA~iy~~-----lG~-----~eeAl 864 (1713)
.. ...+ +-...++. ++=..++...+.+....+-+.. +. .+..+-..|..|.. .|+ .+.|.
T Consensus 75 ~~----~~~~--~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~ 148 (244)
T smart00101 75 ED----HVAS--IKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTL 148 (244)
T ss_pred hH----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 11 0111 11111111 2334456666776665443321 11 11112222333321 222 46899
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHhcC
Q 000292 865 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAKLG 921 (1713)
Q Consensus 865 e~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~-lGd~eeAle~lekALeI~kk~LG 921 (1713)
..|++|+++....+.+.||.......|.+..|+. +++.++|.+..++|+.-....+.
T Consensus 149 ~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld 206 (244)
T smart00101 149 VAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELD 206 (244)
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999998776788898888888788777665 69999999988888877655443
No 308
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=87.57 E-value=45 Score=40.78 Aligned_cols=152 Identities=15% Similarity=0.058 Sum_probs=88.9
Q ss_pred ChhHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000292 756 HRMTAGAYSLLAVVLYHTGD-----FNQATIYQQKALDINERELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRA 828 (1713)
Q Consensus 756 hp~~A~ay~~LA~vy~~lGd-----~deAle~~~KAL~I~Er~lG--~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerA 828 (1713)
+|....++..+....-..-. ........++-|.|+++.+. +++..+...|..+| ....+.++..+-++++
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~---~~~~~~~~l~~~we~~ 91 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEG---EKVWDSEKLAKKWEEL 91 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHhCCHHHHHHHHHHH
Confidence 55555565555543333322 22333344444444444332 34444444454444 3445666666667776
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHHHH
Q 000292 829 LYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD----------HIQTAASYHAIAIALSL 898 (1713)
Q Consensus 829 LeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d----------~~~tA~a~~nLA~ay~~ 898 (1713)
+.. .++.+.+-..|.+.-......-.+...+..|.++|+......... ......++.+++..+..
T Consensus 92 l~~-----~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~ 166 (321)
T PF08424_consen 92 LFK-----NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ 166 (321)
T ss_pred HHH-----CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 653 233444544454444444455578899999999998876554332 23455677788888889
Q ss_pred cCChHHHHHHHHHHHHH
Q 000292 899 MEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 899 lGd~eeAle~lekALeI 915 (1713)
.|-.+.|+..++-.+++
T Consensus 167 aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 167 AGYTERAVALWQALLEF 183 (321)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 99999999999877765
No 309
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=87.32 E-value=0.85 Score=57.06 Aligned_cols=94 Identities=21% Similarity=0.203 Sum_probs=79.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000292 765 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 844 (1713)
Q Consensus 765 ~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a 844 (1713)
+-|.-++.-++|+.|+.+|.|||++ +|..+..+.+-+..+...++|..|+.-+.+|+++ .|..+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence 3456667778999999999999987 6778888899999999999999999999999985 47788
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 845 ATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 845 ~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
.+|..-|.++..++++.+|+..|+....+.
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred heeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 888888888888888888888888777664
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.00 E-value=7.5 Score=44.30 Aligned_cols=68 Identities=21% Similarity=0.187 Sum_probs=52.8
Q ss_pred cCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000292 794 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 866 (1713)
Q Consensus 794 lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~ 866 (1713)
.|...-+++...+.||.+|. ..+.++|+.+|.++|++... ++.-...++..||.+|..+|+++.|--|
T Consensus 133 E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 133 EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 35555677888899998887 67899999999999998643 3222356677899999999999988543
No 311
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.00 E-value=5.1 Score=39.05 Aligned_cols=68 Identities=15% Similarity=0.009 Sum_probs=54.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000292 849 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 921 (1713)
Q Consensus 849 NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG 921 (1713)
.-|.-+....+.++|+..++++|+.. .+.+....++-.|.++|...|+|++++.+.-+-+.+.++.-.
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34555567778899999999999876 345667788888999999999999999998888888766533
No 312
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.94 E-value=4 Score=55.39 Aligned_cols=26 Identities=4% Similarity=0.011 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000292 966 SVSDLLDYINPSHDTKGRNVSTLKRK 991 (1713)
Q Consensus 966 svaelL~~LA~~y~~qGdyeEAl~yy 991 (1713)
.+...+...+.++..+|....|+.|+
T Consensus 663 ~l~~~~~~yanllasQG~~~~A~~~l 688 (1049)
T KOG0307|consen 663 GLAKKFSEYANLLASQGALAAAMSFL 688 (1049)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHhhc
Confidence 35566677778888899998887776
No 313
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.23 E-value=62 Score=44.34 Aligned_cols=165 Identities=16% Similarity=0.102 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------
Q 000292 720 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER------- 792 (1713)
Q Consensus 720 ~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er------- 792 (1713)
.+-.+|.+.++.|...+|++-|-+| ++| ..|...-.+....|.|++-+.|++.|-.-.+.
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eL 1172 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSEL 1172 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHH
Confidence 3455567777778888887777654 223 35666667777888888888877666443211
Q ss_pred ----------------hcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000292 793 ----------------ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 856 (1713)
Q Consensus 793 ----------------~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~ 856 (1713)
+.|+++.+ ....|.-++..+.|+.|.-+|.- ..-+..||..+..
T Consensus 1173 i~AyAkt~rl~elE~fi~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~----------------vSN~a~La~TLV~ 1232 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIAGPNVAN----IQQVGDRCFEEKMYEAAKLLYSN----------------VSNFAKLASTLVY 1232 (1666)
T ss_pred HHHHHHhchHHHHHHHhcCCCchh----HHHHhHHHhhhhhhHHHHHHHHH----------------hhhHHHHHHHHHH
Confidence 11221111 12344555555555555433322 2234457777778
Q ss_pred CCCHHHHHHHHHHHHHH--HH---------------HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000292 857 LGNVHVALRYLHKALKC--NQ---------------RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 917 (1713)
Q Consensus 857 lG~~eeAle~lekALei--~e---------------k~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~k 917 (1713)
+|+|+.|....++|-.. ++ ++.|-+-.-.+.-+-.|-..|...|-|++-+.+++.++-+-+
T Consensus 1233 LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLER 1310 (1666)
T KOG0985|consen 1233 LGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLER 1310 (1666)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhH
Confidence 88888888877776432 11 112222222233455566677778877777777766654433
No 314
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=85.99 E-value=29 Score=43.01 Aligned_cols=158 Identities=19% Similarity=0.081 Sum_probs=105.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 000292 727 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT--AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 804 (1713)
Q Consensus 727 ~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~--A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~a 804 (1713)
..+..|+++.|+++.+...... +.+++..+. +..+..-+.... .-+...|.....+++++ .|+..-+
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL--------~pdlvPa 265 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKL--------APDLVPA 265 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc--------CCccchH
Confidence 4467899999999998877653 223332222 222222222222 34577888888888776 3566666
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000292 805 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 884 (1713)
Q Consensus 805 y~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~ 884 (1713)
-.--+..|+..|+..++-..++.+.+. .-||+++.+| ....--+.++.-++++-++.. -.++
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~lY-------~~ar~gdta~dRlkRa~~L~s-----lk~n 327 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALLY-------VRARSGDTALDRLKRAKKLES-----LKPN 327 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHHH-------HHhcCCCcHHHHHHHHHHHHh-----cCcc
Confidence 677889999999999999999888763 4688865443 434444567777777766641 2345
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 885 TAASYHAIAIALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 885 tA~a~~nLA~ay~~lGd~eeAle~lekAL 913 (1713)
.+.+...+++.-..-|+|..|..-.+.+.
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 56677778888888999988877655444
No 315
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.69 E-value=36 Score=41.63 Aligned_cols=128 Identities=13% Similarity=0.038 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH
Q 000292 734 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 813 (1713)
Q Consensus 734 ~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~ 813 (1713)
.+..+.+|++||+. .+++......|.. ++....+-++....+++++.. ...++.+...|.+.-...+
T Consensus 47 ~E~klsilerAL~~-----np~~~~L~l~~l~---~~~~~~~~~~l~~~we~~l~~-----~~~~~~LW~~yL~~~q~~~ 113 (321)
T PF08424_consen 47 AERKLSILERALKH-----NPDSERLLLGYLE---EGEKVWDSEKLAKKWEELLFK-----NPGSPELWREYLDFRQSNF 113 (321)
T ss_pred HHHHHHHHHHHHHh-----CCCCHHHHHHHHH---HHHHhCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHh
Confidence 34556677777766 2344444444433 344555667777777777764 2345556666666666666
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 814 RLQHTELALKYVKRALYLLHLTCGPS----------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 814 ~lG~~eeALe~yerALeL~~~i~G~d----------hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
..-.++.....|.++|..+....... ...++.++.++...+...|..+.|+..++-.+++.
T Consensus 114 ~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 114 ASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 66778999999999998877654332 23456778888999999999999999999999886
No 316
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=85.64 E-value=4.4 Score=41.90 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=63.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000292 724 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHP 799 (1713)
Q Consensus 724 lA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~l----Gd~deAle~~~KAL~I~Er~lG~Dhp 799 (1713)
+|..++.+|++-+|+++.++.+.... .+ ......+..-|.+++.+ .+.+-=..|+.-+++-+.+..+. +|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~----~~-~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG----ED-ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc----CC-CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-Ch
Confidence 46778899999999999999887632 22 22224555566666554 34444444555555555544322 46
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 800 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 800 ~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
..+..++.||.-+.....|++++.-.+++|.+
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 66777777777665555566666666666543
No 317
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=85.57 E-value=82 Score=36.99 Aligned_cols=183 Identities=15% Similarity=0.137 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hcC
Q 000292 720 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER----ELG 795 (1713)
Q Consensus 720 ~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er----~lG 795 (1713)
.+..+|+++.+.|+|++++.++++++... . .....=.+.|+.+|- ..+.-.+.++.+... ..+
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~-----~--eLt~eERnLlsvayK------n~i~~~R~s~R~l~~~e~~~~~ 69 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMN-----P--ELTEEERNLLSVAYK------NVIGSRRASWRILSSIEQKEEN 69 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTS-----S-----HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC-----C--CCCHHHHHHHHHHHH------hccccchHHHHhhhhHhhhhcc
Confidence 46678899999999999999999998761 1 111222333444432 222223333322211 111
Q ss_pred CCCchhHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHhcCCC--Chh-HHHHHHHHHHHHHH-----CC-----CHH
Q 000292 796 LDHPDTMKSYGDLAVFYYRLQHT-ELALKYVKRALYLLHLTCGPS--HPN-TAATYINVAMMEEG-----LG-----NVH 861 (1713)
Q Consensus 796 ~Dhp~ta~ay~nLA~vy~~lG~~-eeALe~yerALeL~~~i~G~d--hP~-~a~a~~NLA~iy~~-----lG-----~~e 861 (1713)
..+.. .+..+-....+. ++=...+..++.+....+-+. .+. .+..+-..|..|.. .| -.+
T Consensus 70 ~~~~~------~~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~ 143 (236)
T PF00244_consen 70 KGNEK------QVKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAE 143 (236)
T ss_dssp TTTHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred cchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHH
Confidence 11111 111111111112 222334555555554432211 111 11122223433331 11 237
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHhcC
Q 000292 862 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAKLG 921 (1713)
Q Consensus 862 eAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~-lGd~eeAle~lekALeI~kk~LG 921 (1713)
.|...|++|+.+....+.+.||.......|.+..|.. +|+.++|++..++|+.-....++
T Consensus 144 ~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 144 KALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 8999999999999988889999988888888877754 89999999999999988776554
No 318
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=85.51 E-value=0.45 Score=33.39 Aligned_cols=13 Identities=46% Similarity=0.876 Sum_probs=10.4
Q ss_pred CCCCCCCCccCCC
Q 000292 1515 NGNSNVPEFIPGP 1527 (1713)
Q Consensus 1515 ~~~~~~~~f~p~~ 1527 (1713)
.+||+|.||||+-
T Consensus 5 ~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 5 KLNPNAPEFVPSS 17 (18)
T ss_dssp SSSTTSSSS-TTT
T ss_pred ccCCCCccccCCC
Confidence 4899999999973
No 319
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.46 E-value=54 Score=42.33 Aligned_cols=188 Identities=12% Similarity=0.106 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHHh--------cCCHHHHHHHHHHHH
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLA-VVLYH--------TGDFNQATIYQQKAL 787 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA-~vy~~--------lGd~deAle~~~KAL 787 (1713)
..-.++++|..+..+.+|.+|-.++....+... -..+ .|..++ .+|.. .|+-+.|..+++...
T Consensus 302 ~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd-------WS~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~ 373 (546)
T KOG3783|consen 302 KSLMVFERAWLSVGQHQYSRAADSFDLLRDESD-------WSHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGE 373 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh-------hhHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHH
Confidence 356788899999999999999888877666521 1111 222222 33322 345555555554444
Q ss_pred HHHHHhcCCCCc--------------------hhH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000292 788 DINERELGLDHP--------------------DTM--KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 845 (1713)
Q Consensus 788 ~I~Er~lG~Dhp--------------------~ta--~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~ 845 (1713)
.+... -|..-| ... .-|+.++.++..-....+ .-..++..-++..--.+.-+..-
T Consensus 374 ~l~~~-a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~--~~l~k~~~~~~~~~~~d~Dd~~l 450 (546)
T KOG3783|consen 374 ELLAN-AGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSK--NELEKMRAELENPKIDDSDDEGL 450 (546)
T ss_pred HHHHh-ccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCCh--hhHHHHHHHHhccCCCCchHHHH
Confidence 33222 111111 011 124555555443332211 11112222222111112233445
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHH
Q 000292 846 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA-YPLSVQHEQTTLQIL 916 (1713)
Q Consensus 846 a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd-~eeAle~lekALeI~ 916 (1713)
-+..+|.++..+|+-..|..+|..+++-. .....++.....++|.||.+|..+|. +.+|..++.+|-+.+
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKE-SKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 56778999999999999999999988663 22235666778899999999999998 999999999887553
No 320
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.13 E-value=23 Score=44.45 Aligned_cols=142 Identities=17% Similarity=0.078 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLL--AVVLYHTGDFNQATIYQQKALDINEREL 794 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~L--A~vy~~lGd~deAle~~~KAL~I~Er~l 794 (1713)
.+...+..+..++..++|..|..++...+.. +-+. .. ...+..| |.-+|...++.+|.+++++.+......
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~--~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l- 202 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRR---LPGR--EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL- 202 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCch--hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-
Confidence 3556677788899999999999999998764 2221 11 3344444 556678899999999999877642110
Q ss_pred CCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 795 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 795 G~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
......+..+..+. +++..+.............-....+..+...|.--...|+|+.|...+-+++++.
T Consensus 203 ----~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 203 ----NQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred ----HhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 00011111111111 1222222222211110000012233334444555557899999999999999886
Q ss_pred HH
Q 000292 875 QR 876 (1713)
Q Consensus 875 ek 876 (1713)
.+
T Consensus 272 ~Q 273 (379)
T PF09670_consen 272 AQ 273 (379)
T ss_pred HH
Confidence 43
No 321
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=84.70 E-value=23 Score=44.04 Aligned_cols=139 Identities=12% Similarity=-0.022 Sum_probs=93.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHH----HHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH
Q 000292 768 VVLYHTGDFNQATIYQQKALDIN----ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 843 (1713)
Q Consensus 768 ~vy~~lGd~deAle~~~KAL~I~----Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~ 843 (1713)
..++.+.++.+|...-...+.-. .|++ +--.+..|+.+...|...|+...-...+..-+.... ++.+....
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtl---D~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt--Lrhd~e~q 208 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTL---DLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTAT--LRHDEEGQ 208 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhH---HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh--hcCcchhH
Confidence 33444577788777665554321 1111 122457788899999999997776666666555433 34455556
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 844 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 844 a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
+...+.|=..|...+.|+.|-.+.-++.--. .......+..++.+|.+..-+++|..|.+++-+|+..
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 6677778888998888888887665543110 0122367788889999999999999999999988754
No 322
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.47 E-value=42 Score=43.86 Aligned_cols=106 Identities=8% Similarity=0.002 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000292 803 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 882 (1713)
Q Consensus 803 ~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~ 882 (1713)
..+.|-|.-+++..+|..|+++|+..+..+-. ...+...+....+|+.+|..+.+.+.|.+++++|-+.-.+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~------ 426 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ------ 426 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc------
Confidence 45667788899999999999999998875421 2223456788999999999999999999999999876422
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 883 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 883 ~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
...+...+-.+....|.-++|+....+...++..
T Consensus 427 --~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 427 --SPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred --cHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 2223333445555667788888877766655543
No 323
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.36 E-value=18 Score=53.29 Aligned_cols=175 Identities=21% Similarity=0.097 Sum_probs=108.1
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000292 712 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 791 (1713)
Q Consensus 712 ~~~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~E 791 (1713)
......++.+++.|++....|+++.|..++-.|.+.. .+.++...|..++.+|+-..|+.++++.+..+.
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4456679999999999999999999999998887652 456788899999999999999999999997653
Q ss_pred Hhc-CC--------CCchhHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-----HHHHH
Q 000292 792 REL-GL--------DHPDTMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINV-----AMMEE 855 (1713)
Q Consensus 792 r~l-G~--------Dhp~ta~ay~nLA~vy~~lG~~--eeALe~yerALeL~~~i~G~dhP~~a~a~~NL-----A~iy~ 855 (1713)
.-+ ++ +......+...++......+++ +.-+++|+.|.++..+.- ..|-..+..|..+ +..+.
T Consensus 1734 ~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe-~~hy~l~~yy~kll~~~~~~~~E 1812 (2382)
T KOG0890|consen 1734 PDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE-DKHYHLGKYYDKLLEDYKSNKME 1812 (2382)
T ss_pred ccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc-CceeeHHHHHHHHhhhhhccccc
Confidence 221 11 1111123455666666667765 456788899888865421 1233333212111 11222
Q ss_pred HCCCHHH---HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 000292 856 GLGNVHV---ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 897 (1713)
Q Consensus 856 ~lG~~ee---Ale~lekALei~ek~~G~d~~~tA~a~~nLA~ay~ 897 (1713)
..|++.. |+.+|.+|+..-.+..-..-|.....|..+|..+.
T Consensus 1813 ~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~ 1857 (2382)
T KOG0890|consen 1813 KSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHIS 1857 (2382)
T ss_pred ccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhc
Confidence 4455554 55566666654322221223344455555554443
No 324
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.27 E-value=11 Score=46.60 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--C----CChhH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCG--P----YHRMT----AGAYSLLAVVLYHTGDFNQATIYQQKALD 788 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G--~----dhp~~----A~ay~~LA~vy~~lGd~deAle~~~KAL~ 788 (1713)
+..+.-|..++.+++|..|..-|..||+++.+..- . ...++ ..+...|..||..+++.+.|+....++|.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 34455566777888888888888888888765421 1 11122 22345788999999999999999999987
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 789 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 835 (1713)
Q Consensus 789 I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i 835 (1713)
+ +|.....+..-|.|+..+.+|.+|-+-+.-|..++-..
T Consensus 257 l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~ 295 (569)
T PF15015_consen 257 L--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLS 295 (569)
T ss_pred c--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6 56677777888999999999999999888888776554
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=83.75 E-value=12 Score=51.45 Aligned_cols=22 Identities=5% Similarity=-0.016 Sum_probs=13.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 000292 891 AIAIALSLMEAYPLSVQHEQTT 912 (1713)
Q Consensus 891 nLA~ay~~lGd~eeAle~lekA 912 (1713)
.-|.+|...|+.++|+..|+.+
T Consensus 957 ~Aal~Ye~~GklekAl~a~~~~ 978 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALKAYKEC 978 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHHh
Confidence 3455666666666666665543
No 326
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.01 E-value=12 Score=46.50 Aligned_cols=104 Identities=17% Similarity=0.165 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHh
Q 000292 801 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN---QRL 877 (1713)
Q Consensus 801 ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~---ek~ 877 (1713)
+-.++..||..|...|+++.|+++|-|+...+.. .-.++..+.|+-.+-...|+|..-..+-.+|.... ...
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~ 223 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENL 223 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhH
Confidence 4578899999999999999999999999887654 23467778888888888999998888888887652 000
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000292 878 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 912 (1713)
Q Consensus 878 ~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekA 912 (1713)
...-+..+.++ -|.+...+++|..|..++-.+
T Consensus 224 -~q~v~~kl~C~--agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 224 -AQEVPAKLKCA--AGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred -HHhcCcchHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence 00111123334 355555667898888877543
No 327
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.70 E-value=1.5e+02 Score=38.47 Aligned_cols=221 Identities=14% Similarity=0.013 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 000292 720 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 799 (1713)
Q Consensus 720 ~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp 799 (1713)
-++..|+.+...|+.+.|+.+++.++.... ......+++.+|+++..+.+|..|..++........-
T Consensus 269 wll~~ar~l~~~g~~eaa~~~~~~~v~~~~------kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW------- 335 (546)
T KOG3783|consen 269 WLLMEARILSIKGNSEAAIDMESLSIPIRM------KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW------- 335 (546)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh-------
Confidence 345556677777889999999998887321 1234678999999999999999999998887765321
Q ss_pred hhHHHHHHHH-HHH--------HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH----------------------HHH
Q 000292 800 DTMKSYGDLA-VFY--------YRLQHTELALKYVKRALYLLHLTCGPSHPNTAA----------------------TYI 848 (1713)
Q Consensus 800 ~ta~ay~nLA-~vy--------~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~----------------------a~~ 848 (1713)
.--.|..++ .|| ...|+-++|-.+++.+.++.... |.+.|.-.. -++
T Consensus 336 -S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a-~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~ 413 (546)
T KOG3783|consen 336 -SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANA-GKNLPLEKFIVRKVERFVKRGPLNASILLASPYY 413 (546)
T ss_pred -hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhc-cccCchhHHHHHHHHHHhccccccccccccchHH
Confidence 111222333 222 22456677777777776665542 232221110 122
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 000292 849 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 928 (1713)
Q Consensus 849 NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ 928 (1713)
.++.+|....... ..-++++..-.+.-.-.+..+...-+..+|.++..+|+-..|..+++.++.-....
T Consensus 414 El~Y~Wngf~~~s--~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~--------- 482 (546)
T KOG3783|consen 414 ELAYFWNGFSRMS--KNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKR--------- 482 (546)
T ss_pred HHHHHHhhcccCC--hhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---------
Confidence 2232322221111 01111111111111111333444456667888888887777777666544221000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
Q 000292 929 DAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGR-NVSTLKRKTYVAKVK 998 (1713)
Q Consensus 929 ea~~~La~L~qka~e~AeAl~~~~~~~~~a~a~~~~~svaelL~~LA~~y~~qGd-yeEAl~yyeKALeL~ 998 (1713)
..++-.+.-+++.+|..|..+|. ..+|.+|+.+|....
T Consensus 483 --------------------------------~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 483 --------------------------------TEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred --------------------------------ccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 01111233467888888888888 899999999887765
No 328
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=81.64 E-value=2.8 Score=35.29 Aligned_cols=36 Identities=36% Similarity=0.448 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000292 760 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 795 (1713)
Q Consensus 760 A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG 795 (1713)
|.+|..||.+....++|++|+.-|++||.+.++++.
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 357889999999999999999999999999888653
No 329
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.53 E-value=35 Score=40.74 Aligned_cols=130 Identities=12% Similarity=0.019 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH
Q 000292 734 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 813 (1713)
Q Consensus 734 ~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~ 813 (1713)
-++-++-+.++++-.+...| ..+.+.++.++|..|.+.++.+.+.+++++.+.-.-.+ .-..+...+-..||.+|.
T Consensus 91 neeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~~y~ 166 (412)
T COG5187 91 NEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGLIYG 166 (412)
T ss_pred hHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHhhc
Confidence 34556777777766655433 34678999999999999999999999998887654332 233456667778898887
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 814 RLQHTELALKYVKRALYLLHLTCGPSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 814 ~lG~~eeALe~yerALeL~~~i~G~dhP~--~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
.+.-.++.++...-.++ + |.+... ...+| .|.......+|.+|-.++-..+..+
T Consensus 167 d~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y--~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 167 DRKVVEESLEVADDIIE---K--GGDWERRNRYKVY--KGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred cHHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHhccc
Confidence 66555555544444333 3 333322 33344 4666666778888888777776554
No 330
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.48 E-value=0.82 Score=55.03 Aligned_cols=90 Identities=23% Similarity=0.300 Sum_probs=76.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 000292 768 VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 847 (1713)
Q Consensus 768 ~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~ 847 (1713)
.-.+..|.+++|++.|..|+.+ .|..+..|..-|.++..+++...|+.-|..|+++ .++.+.-|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~y 185 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGY 185 (377)
T ss_pred HHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Cccccccc
Confidence 3344578899999999999886 5778899999999999999999999999999986 45566666
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000292 848 INVAMMEEGLGNVHVALRYLHKALKC 873 (1713)
Q Consensus 848 ~NLA~iy~~lG~~eeAle~lekALei 873 (1713)
-.-|.....+|+|++|..+|+.|+++
T Consensus 186 kfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 186 KFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred chhhHHHHHhhchHHHHHHHHHHHhc
Confidence 66788888999999999999988775
No 331
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=81.35 E-value=30 Score=41.99 Aligned_cols=129 Identities=15% Similarity=0.085 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 000292 735 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 814 (1713)
Q Consensus 735 eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~ 814 (1713)
++-++-+.++++-.+...|. .+...++.+.|.-|.+.||.+.|++.+++...-.-.+ ....+...+...||.+|..
T Consensus 81 eeki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred HHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhcc
Confidence 34466677777777766663 4678899999999999999999999988876532221 2234566677788988865
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 815 LQHTELALKYVKRALYLLHLTCGPSHP--NTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 815 lG~~eeALe~yerALeL~~~i~G~dhP--~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
..-. -+..++|-.+.++ |.|.. +...+| -|.......+|.+|-.+|-.++..+
T Consensus 157 ~~lV---~~~iekak~liE~--GgDWeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 157 HDLV---TESIEKAKSLIEE--GGDWERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHH---HHHHHHHHHHHHh--CCChhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHcccc
Confidence 5433 3344455555555 43432 334444 5666667778888888888777654
No 332
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.35 E-value=2.1 Score=33.23 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 803 KSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 803 ~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
.+++++|.+|..+|++++|+++|++.+..
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 36889999999999999999999999874
No 333
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=80.92 E-value=3 Score=35.04 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 000292 887 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 922 (1713)
Q Consensus 887 ~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~ 922 (1713)
.+|..||.+-...++|++|+.-|++|++|.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 467889999999999999999999999999987754
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.66 E-value=28 Score=46.68 Aligned_cols=37 Identities=22% Similarity=0.156 Sum_probs=31.2
Q ss_pred CCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000292 754 PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 790 (1713)
Q Consensus 754 ~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~ 790 (1713)
.+....+.++...|.-++..|++++|..+|-+++...
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 3445567888899999999999999999999998753
No 335
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=80.44 E-value=10 Score=39.92 Aligned_cols=73 Identities=22% Similarity=0.190 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc-----h--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 763 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP-----D--TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 835 (1713)
Q Consensus 763 y~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp-----~--ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i 835 (1713)
+.++|...+..+++-.|+-.|++|+.+.++....... . ......|||.++..+|+.+-.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999887311111 1 12456799999999999999999999987765443
No 336
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=80.33 E-value=22 Score=36.92 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=65.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000292 808 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHI 883 (1713)
Q Consensus 808 LA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~----lG~~eeAle~lekALei~ek~~G~d~~ 883 (1713)
+|.-++..|++-+|++..+..+... |.+ ......+..-|.++.. ..+.+-=..|+.-+++.+.+..+ -++
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h----~~~-~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH----GED-ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc----cCC-CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence 4677899999999999999987652 322 2222445555666643 34555566777777777766533 345
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 884 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 884 ~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
..|..++.||.-+...-.|++++.-.+++|.+
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 66888888887766555556666655555543
No 337
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=80.30 E-value=1.5e+02 Score=38.65 Aligned_cols=142 Identities=14% Similarity=0.057 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHhc
Q 000292 760 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH---TELALKYVKRALYLLHLTC 836 (1713)
Q Consensus 760 A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~---~eeALe~yerALeL~~~i~ 836 (1713)
+..+...+.++...|+...|-.+-.++..++|+....-.-.....|+.++..-...-+ ++....++++++.+...
T Consensus 286 s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~-- 363 (656)
T KOG1914|consen 286 SMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDI-- 363 (656)
T ss_pred HHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhcc--
Confidence 4445567778888888877777777777777764322222234455555555444433 66666777777776432
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 837 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 837 G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
.+. .+|.++-..-.+..=...|...|.+|-+.- .+..|..++.++. =|...+|..-|...|+-.+.-
T Consensus 364 ---~~t--Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~---r~~hhVfVa~A~m----Ey~cskD~~~AfrIFeLGLkk 430 (656)
T KOG1914|consen 364 ---DLT--LVYCQYMNFIRRAEGLKAARKIFKKAREDK---RTRHHVFVAAALM----EYYCSKDKETAFRIFELGLKK 430 (656)
T ss_pred ---CCc--eehhHHHHHHHHhhhHHHHHHHHHHHhhcc---CCcchhhHHHHHH----HHHhcCChhHHHHHHHHHHHh
Confidence 222 233333333334444567777777776543 2234555554442 356789999999988877744
No 338
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=80.04 E-value=61 Score=42.36 Aligned_cols=160 Identities=16% Similarity=0.069 Sum_probs=82.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---------HHH-hcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHH------
Q 000292 723 ESSKTALDKGKLEDAVTYGTKALAK---------LVA-VCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA------ 786 (1713)
Q Consensus 723 elA~~~l~qG~~eeAle~lqeAL~l---------~eq-v~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KA------ 786 (1713)
.+|...+..=+++-|...|.+.-.+ .++ ..|. .|. -..+|.++..+|.|.+|.++|.+.
T Consensus 590 ~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge-~P~----~iLlA~~~Ay~gKF~EAAklFk~~G~enRA 664 (1081)
T KOG1538|consen 590 ELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGE-TPN----DLLLADVFAYQGKFHEAAKLFKRSGHENRA 664 (1081)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC-Cch----HHHHHHHHHhhhhHHHHHHHHHHcCchhhH
Confidence 3444555555667777766655432 111 1111 121 134788899999999999988764
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000292 787 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 866 (1713)
Q Consensus 787 L~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~ 866 (1713)
++++.. .-.+.++.-|...|.-++-..+.++-.+.... -..|.. .|.++...|+.++|+..
T Consensus 665 lEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~---~kePka------AAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 665 LEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARN---IKEPKA------AAEMLISAGEHVKAIEI 725 (1081)
T ss_pred HHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh---cCCcHH------HHHHhhcccchhhhhhh
Confidence 333211 12234455555555555544444443333222 233443 36778888888888764
Q ss_pred ------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000292 867 ------LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 910 (1713)
Q Consensus 867 ------lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~le 910 (1713)
.+-++++..++- ..-...+..+|..+..+..+..|.+.|+
T Consensus 726 ~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 726 CGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred hhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHH
Confidence 344555554431 1112233344444445555554444443
No 339
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=80.03 E-value=2.1 Score=53.15 Aligned_cols=132 Identities=23% Similarity=0.177 Sum_probs=89.6
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHh----cCC--CChhHHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHH
Q 000292 721 LLESSKTALDK-GKLEDAVTYGTKALAKLVAV----CGP--YHRMTAGAYSLL----AVVLYHTGDFNQATIYQQKALDI 789 (1713)
Q Consensus 721 LlelA~~~l~q-G~~eeAle~lqeAL~l~eqv----~G~--dhp~~A~ay~~L----A~vy~~lGd~deAle~~~KAL~I 789 (1713)
+--+|..+... .+.-.|+.++.++++...+- ... ..|..+.-|... ..+-...+|.+ ++--+||.+
T Consensus 248 lEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~RmqaLii 324 (615)
T KOG0508|consen 248 LELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EMRMQALII 324 (615)
T ss_pred HHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HHHHHHHHH
Confidence 33345554433 35677899999998876551 111 112222222111 11111122222 233578899
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000292 790 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 855 (1713)
Q Consensus 790 ~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~ 855 (1713)
.++++|++|+++.......|-+|..+|+++..+++++.||.+.++.+.+-.|.++..+...+.++.
T Consensus 325 rerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 325 RERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 999999999998877777889999999999999999999999999988888988888877777665
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.88 E-value=2.3 Score=33.01 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000292 762 AYSLLAVVLYHTGDFNQATIYQQKALDI 789 (1713)
Q Consensus 762 ay~~LA~vy~~lGd~deAle~~~KAL~I 789 (1713)
+++.+|.+|..+|++++|+.++++.+..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999875
No 341
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.86 E-value=2.5 Score=30.88 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 803 KSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 803 ~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
.++.++|.+|..++++++|..+|++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999999874
No 342
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=79.54 E-value=5 Score=52.44 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=12.6
Q ss_pred cccceeeccCCCCCCCCcccC
Q 000292 1417 ASAVAINMTLPPGPGAVTAVA 1437 (1713)
Q Consensus 1417 ~~~~~~~~~~~~~~~~~~~~~ 1437 (1713)
++|+.++-.+||-|++.||++
T Consensus 547 pPPlpggag~PPPPpplPg~a 567 (1102)
T KOG1924|consen 547 PPPLPGGAGPPPPPPPLPGIA 567 (1102)
T ss_pred CCCCCCCCCCCccCCCCCccc
Confidence 346666666666666666554
No 343
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=79.23 E-value=92 Score=40.85 Aligned_cols=52 Identities=10% Similarity=-0.021 Sum_probs=34.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 851 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 851 A~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekAL 913 (1713)
-.++...++|.+|....++-=++ .-..|+..|+.+....+|++|.+.|.+|-
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~-----------~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEF-----------KDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred hhheeecccchHhHhhhhhCccc-----------cccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 34455677777776544432211 23456777888999999999988877653
No 344
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.74 E-value=82 Score=37.86 Aligned_cols=133 Identities=11% Similarity=0.136 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000292 775 DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 854 (1713)
Q Consensus 775 d~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy 854 (1713)
.-++-++-+.++++-.+...| ......+..|+|.+|.+.++.+.+.+++.+.+.-...+ | -..++..+...||.+|
T Consensus 90 kneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st-g-~KiDv~l~kiRlg~~y 165 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST-G-LKIDVFLCKIRLGLIY 165 (412)
T ss_pred hhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc-c-cchhhHHHHHHHHHhh
Confidence 345556666666665554332 24567899999999999999999999999888754433 2 2345566677788888
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 855 EGLGNVHVALRYLHKALKCNQRLLGPDH--IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 855 ~~lG~~eeAle~lekALei~ek~~G~d~--~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
..+.-.++.++... .+.++ |.+- .....+| .|.......+|.+|..++-.++..|..
T Consensus 166 ~d~~vV~e~lE~~~---~~iEk--GgDWeRrNRyK~Y--~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 166 GDRKVVEESLEVAD---DIIEK--GGDWERRNRYKVY--KGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred ccHHHHHHHHHHHH---HHHHh--CCCHHhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 66554454444333 33333 2222 2222333 366666677888888877777665543
No 345
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.71 E-value=16 Score=46.97 Aligned_cols=98 Identities=21% Similarity=0.192 Sum_probs=72.5
Q ss_pred HHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 803 KSYGDLAVFY-YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 881 (1713)
Q Consensus 803 ~ay~nLA~vy-~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d 881 (1713)
..+.++|.+| ..+|+..+|+.++..|+-+. ++|... .++..||.++.+.|...+|--.+..|+...
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~-----~~h~kd-i~lLSlaTiL~RaG~sadA~iILhAA~~dA------- 279 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFS-----SRHNKD-IALLSLATVLHRAGFSADAAVILHAALDDA------- 279 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhC-----Cccccc-chhhhHHHHHHHcccccchhheeehhccCC-------
Confidence 4445555555 45699999999999998763 333322 346679999999999998888777666544
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000292 882 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 914 (1713)
Q Consensus 882 ~~~tA~a~~nLA~ay~~lGd~eeAle~lekALe 914 (1713)
+..+.-++.+|++|..+|+|...+.+|..|.+
T Consensus 280 -~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k 311 (886)
T KOG4507|consen 280 -DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQ 311 (886)
T ss_pred -ccccccceeHHHHHHHHhhhhhhhhhhhhhhc
Confidence 23334478899999999999999988887664
No 346
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=78.68 E-value=2.7 Score=52.28 Aligned_cols=135 Identities=22% Similarity=0.265 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHh----cCCCCchhHHHHH------HHHHHHHHcCChHHHHHHHHHHH
Q 000292 761 GAYSLLAVVLYHT-GDFNQATIYQQKALDINERE----LGLDHPDTMKSYG------DLAVFYYRLQHTELALKYVKRAL 829 (1713)
Q Consensus 761 ~ay~~LA~vy~~l-Gd~deAle~~~KAL~I~Er~----lG~Dhp~ta~ay~------nLA~vy~~lG~~eeALe~yerAL 829 (1713)
.++-.||..|... .|.-.|+.++++|+.....- .....+....+|. +...+..-.++.+ ++--+||
T Consensus 246 ealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~RmqaL 322 (615)
T KOG0508|consen 246 EALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EMRMQAL 322 (615)
T ss_pred HHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HHHHHHH
Confidence 3444455544332 24567888888888876541 0011111112221 1112222222222 2334677
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 000292 830 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 898 (1713)
Q Consensus 830 eL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~ 898 (1713)
-+.+.++|+.||++.......|-+|...|+++..++++.-||.+.++.+.+-++.++..+...|.++..
T Consensus 323 iirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 323 IIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 788889999999998777778999999999999999999999999999999999999999888888764
No 347
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.35 E-value=2.3 Score=31.07 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000292 761 GAYSLLAVVLYHTGDFNQATIYQQKALDI 789 (1713)
Q Consensus 761 ~ay~~LA~vy~~lGd~deAle~~~KAL~I 789 (1713)
.++..+|.+|..+|++++|+.++++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999999875
No 348
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.33 E-value=22 Score=39.28 Aligned_cols=92 Identities=21% Similarity=0.156 Sum_probs=70.3
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000292 712 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 791 (1713)
Q Consensus 712 ~~~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~E 791 (1713)
.+.......|++.....+..++.+++..++.- +..+ .|.....-..-|+++...|+|.+|+.+++....
T Consensus 4 ~C~~~iv~gLie~~~~al~~~~~~D~e~lL~A-LrvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~--- 72 (160)
T PF09613_consen 4 QCSDEIVGGLIEVLSVALRLGDPDDAEALLDA-LRVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE--- 72 (160)
T ss_pred cCcHHHHHHHHHHHHHHHccCChHHHHHHHHH-HHHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc---
Confidence 45556677888888889999999998887754 4432 455666677789999999999999999988633
Q ss_pred HhcCCCCchhHHHHHHHHHHHHHcCChH
Q 000292 792 RELGLDHPDTMKSYGDLAVFYYRLQHTE 819 (1713)
Q Consensus 792 r~lG~Dhp~ta~ay~nLA~vy~~lG~~e 819 (1713)
+.+....+-..+|.|++.+|+.+
T Consensus 73 -----~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 -----RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred -----cCCCChHHHHHHHHHHHHcCChH
Confidence 35666667777899998888863
No 349
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.14 E-value=10 Score=48.63 Aligned_cols=100 Identities=18% Similarity=0.131 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000292 761 GAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 839 (1713)
Q Consensus 761 ~ay~~LA~vy~~-lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~d 839 (1713)
..+.++|..|++ +|+..+|+.++..|+.... +|.. -.++..||.+++++|...+|--.+..|+.-+
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~-----~h~k-di~lLSlaTiL~RaG~sadA~iILhAA~~dA------- 279 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSS-----RHNK-DIALLSLATVLHRAGFSADAAVILHAALDDA------- 279 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCC-----cccc-cchhhhHHHHHHHcccccchhheeehhccCC-------
Confidence 355667777765 6999999999999988743 2322 2457789999999999999887776666532
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 840 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 840 hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
+....-++.+|.+|..+|.+.....+|..|++..
T Consensus 280 -~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 280 -DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQAR 313 (886)
T ss_pred -ccccccceeHHHHHHHHhhhhhhhhhhhhhhccC
Confidence 3333346778999999999998888888777653
No 350
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=77.52 E-value=54 Score=39.97 Aligned_cols=131 Identities=11% Similarity=0.121 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000292 777 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 856 (1713)
Q Consensus 777 deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~ 856 (1713)
++-++-+.++++-.++.+|. .....+..+.|.+|.+.|+-+.|++.+.+..+-.-.. | ...++..+...+|.+|..
T Consensus 81 eeki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~-g-~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL-G-HKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred HHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc-c-cchhhHHHHHHHHHhhcc
Confidence 34455566667766766553 4567899999999999999999999998877643322 2 234566677778888764
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 857 LGNVHVALRYLHKALKCNQRLLGPD--HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 857 lG~~eeAle~lekALei~ek~~G~d--~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
. +---+.+++|-.+.++ |.| ..+...+| -|.......+|.+|..++-.++..|..
T Consensus 157 ~---~lV~~~iekak~liE~--GgDWeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 157 H---DLVTESIEKAKSLIEE--GGDWERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred H---HHHHHHHHHHHHHHHh--CCChhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 4 4444555566666654 332 22333344 366666778888888888887766543
No 351
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=77.10 E-value=38 Score=42.29 Aligned_cols=100 Identities=22% Similarity=0.222 Sum_probs=73.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCc------h----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000292 767 AVVLYHTGDFNQATIYQQKALDINERELGLDHP------D----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 836 (1713)
Q Consensus 767 A~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp------~----ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~ 836 (1713)
|..+|++++|..|.--|+.||.++.+......+ + ...+...|..||..+++.+.|+....+.+.+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l----- 257 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL----- 257 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-----
Confidence 455677788888888888888887663222111 1 1244567999999999999999999998864
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 837 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 837 G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
.|....-+...|.++..+.+|.+|-+-+--|.-++
T Consensus 258 ---nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 258 ---NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred ---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556677888999999999988777766665
No 352
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=76.26 E-value=2.4e+02 Score=36.22 Aligned_cols=135 Identities=17% Similarity=0.172 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHH--
Q 000292 716 ADGRQLLESSKTALDKGK-LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI--YQQKALDIN-- 790 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~-~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle--~~~KAL~I~-- 790 (1713)
.++..++.-|..++..|. -++|+.+++.++... ..+. .|.+.. ..+....|.+|+. .+-+.+.+-
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-----~yD~---ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~f 446 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-----NYDI---ECENIV--FLFVKQAYKQALSMHAIPRLLKLEDF 446 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-----cccH---HHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 446677777888889988 778999998888762 1111 122111 1111222344433 222222221
Q ss_pred HHhcCCCCch--h--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000292 791 ERELGLDHPD--T--MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 866 (1713)
Q Consensus 791 Er~lG~Dhp~--t--a~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~ 866 (1713)
-...|..... - +.....=|.+++.+|+|.++.-|-.-..++ .| ...+|..+|.++...++|++|..+
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--------aP-S~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--------AP-SPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CC-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 1112322111 1 122223366788999999988766555544 23 356788899999999999999998
Q ss_pred HHH
Q 000292 867 LHK 869 (1713)
Q Consensus 867 lek 869 (1713)
+..
T Consensus 518 l~~ 520 (549)
T PF07079_consen 518 LQK 520 (549)
T ss_pred HHh
Confidence 863
No 353
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=76.22 E-value=64 Score=40.52 Aligned_cols=139 Identities=17% Similarity=0.078 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH--HHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000292 762 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY--YRLQHTELALKYVKRALYLLHLTCGPS 839 (1713)
Q Consensus 762 ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy--~~lG~~eeALe~yerALeL~~~i~G~d 839 (1713)
-....+.-++..++|..|...+...+.. + ... .. ...|..|+..| +..-++.+|.++++..+......
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l-~~~-~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l---- 202 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRR---L-PGR-EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL---- 202 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---C-Cch-hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh----
Confidence 3445667778899999999999887653 2 111 12 45566665554 56677899999999877642210
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 840 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 840 hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
......+..+..+ -++...+...+.........-.......++.-|.--...|+|+.|+..+-++++++.+
T Consensus 203 -~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 203 -NQEREGLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred -HhHHHHHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 0001111111111 1222222222222211100001222222333343444689999999988888887654
No 354
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=74.31 E-value=77 Score=39.57 Aligned_cols=57 Identities=16% Similarity=0.056 Sum_probs=34.7
Q ss_pred CCchHHHHhhhccchhhccCCHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHh
Q 000292 694 SPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVAV 751 (1713)
Q Consensus 694 ~~F~~eDIlnl~PvvK~~~~~s~~A~~LlelA~~~l~qG---------~~eeAle~lqeAL~l~eqv 751 (1713)
..|.--|... ...+.........+..+|++|..+.+.| .+..|..+|++|-..++.+
T Consensus 91 v~F~W~d~~~-~~~~~~~~l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l 156 (361)
T cd09239 91 VPFTWTDIFS-GSEVTHEDIKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYL 156 (361)
T ss_pred ceeeeecccC-CCchhhhhHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 2222333345566778888888776544 2677889999988776543
No 355
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=72.90 E-value=1.7e+02 Score=36.54 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=28.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHh
Q 000292 711 AACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVAV 751 (1713)
Q Consensus 711 ~~~~s~~A~~LlelA~~~l~qG---------~~eeAle~lqeAL~l~eqv 751 (1713)
.......+..+|+.|..+.+.| .+..|..+|++|-..+.-+
T Consensus 99 ~sl~fEkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~~l 148 (350)
T cd09244 99 RSVAFEKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFNYL 148 (350)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778888887775443 2678889999888776543
No 356
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.88 E-value=16 Score=41.66 Aligned_cols=65 Identities=23% Similarity=0.175 Sum_probs=51.1
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHH
Q 000292 753 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELAL 822 (1713)
Q Consensus 753 G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeAL 822 (1713)
|....+.+...+.||..|. ..+.++|+.++.+++.++. .++.-....+..||.+|+.+|+++.|.
T Consensus 134 ~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 134 GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3444466788888887666 6789999999999999863 333444678899999999999999885
No 357
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.06 E-value=1.2e+02 Score=42.49 Aligned_cols=29 Identities=24% Similarity=0.095 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000292 761 GAYSLLAVVLYHTGDFNQATIYQQKALDI 789 (1713)
Q Consensus 761 ~ay~~LA~vy~~lGd~deAle~~~KAL~I 789 (1713)
.+.+.+|.+|...|+..+|+.+|.+|..-
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhc
Confidence 35567899999999999999999999763
No 358
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.02 E-value=2.2e+02 Score=33.95 Aligned_cols=148 Identities=12% Similarity=0.030 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHhcCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN-QATIYQQKALDINERELGL 796 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~d-eAle~~~KAL~I~Er~lG~ 796 (1713)
...++.-|..+++.|++..|.++..-.++.+++...+. .......|+.++...+.-+ +-..+..+|+... + .|.
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~---~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~ 84 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPV---DEESIARLIELISLFPPEEPERKKFIKAAIKWS-K-FGS 84 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-H-TSS
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-c-cCC
Confidence 34555666788899999999999988888877642222 2233456777777665433 4556788888887 3 344
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHH-----------HHHHHHhcCCCChhHHHHH-HHHHHHHHHCCCHHHHH
Q 000292 797 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRA-----------LYLLHLTCGPSHPNTAATY-INVAMMEEGLGNVHVAL 864 (1713)
Q Consensus 797 Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerA-----------LeL~~~i~G~dhP~~a~a~-~NLA~iy~~lG~~eeAl 864 (1713)
........+..+|..|+..|++.+|..+|-.+ +..+... |. +.-...+ ...-..|...++...|.
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-~~--~~e~dlfi~RaVL~yL~l~n~~~A~ 161 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-GY--PSEADLFIARAVLQYLCLGNLRDAN 161 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-TS--S--HHHHHHHHHHHHHHTTBHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-cC--CcchhHHHHHHHHHHHHhcCHHHHH
Confidence 44456678899999999999999999888432 1112221 22 1112233 23334577889999898
Q ss_pred HHHHHHHHH
Q 000292 865 RYLHKALKC 873 (1713)
Q Consensus 865 e~lekALei 873 (1713)
..+..-++.
T Consensus 162 ~~~~~f~~~ 170 (260)
T PF04190_consen 162 ELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766655
No 359
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.02 E-value=15 Score=45.53 Aligned_cols=105 Identities=21% Similarity=0.224 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--cC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE--LG 795 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~--lG 795 (1713)
-+.+.++|..|+..|+++.|+..|.++-..+.+. ..++..+.++-.+-..+|+|..-..+-.+|....... ..
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-----khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~ 224 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-----KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLA 224 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-----HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHH
Confidence 5667788999999999999999999987776442 4567788888899999999999998888887652100 00
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 796 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 829 (1713)
Q Consensus 796 ~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerAL 829 (1713)
..-+.-+.++. |+....+++|..|.+++-.+.
T Consensus 225 q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 225 QEVPAKLKCAA--GLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HhcCcchHHHH--HHHHHHHHHHHHHHHHHHhCC
Confidence 11122234444 444555568888888876654
No 360
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=71.76 E-value=37 Score=43.96 Aligned_cols=71 Identities=20% Similarity=0.125 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000292 760 AGAYSLLAVVLYH--TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 833 (1713)
Q Consensus 760 A~ay~~LA~vy~~--lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~ 833 (1713)
..++.+||.+--. ...-..++.+|.+|+...++.++..| ..-|..+|.+|++.++|.+|+.++-.|-...+
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~ 349 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIR 349 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556655433 23346789999999999999886544 45678899999999999999998888866543
No 361
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=71.66 E-value=99 Score=43.33 Aligned_cols=100 Identities=13% Similarity=-0.024 Sum_probs=54.6
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------HHHHhcCCCcHH
Q 000292 813 YRLQHTELALKYVKRALYLLHLTC--GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK------CNQRLLGPDHIQ 884 (1713)
Q Consensus 813 ~~lG~~eeALe~yerALeL~~~i~--G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALe------i~ek~~G~d~~~ 884 (1713)
.+.|.|.+|+.+|.--.+..+.++ -.+|-....-+...|.+|...|+.++|+..|+.+.. +..++. ...-.
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~-~~~de 997 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLS-EGKDE 997 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhc-CCHHH
Confidence 355667777766654443333322 112222223345678889999999999998876543 333221 11112
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 885 TAASYHAIAIALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 885 tA~a~~nLA~ay~~lGd~eeAle~lekAL 913 (1713)
....-..|+.-+..++++-+|-+.+++.+
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 22223455666667777776666555443
No 362
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=71.53 E-value=25 Score=37.17 Aligned_cols=73 Identities=18% Similarity=0.086 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh---h----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 805 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP---N----TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 805 y~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP---~----~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
+..+|...+..+++-.|+-+|++|+.+.+.....+.. + ......|||..|..+|+.+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999998886322211 1 13457899999999999999999999887765444
No 363
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.86 E-value=2.2e+02 Score=34.96 Aligned_cols=72 Identities=14% Similarity=-0.078 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000292 842 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 914 (1713)
Q Consensus 842 ~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALe 914 (1713)
..+.+...||.+|.+.++|..|-..+. ++....-....+....+..+..+|.+|...++-.+|..+..++--
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSi 172 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASI 172 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 356778889999999999998877653 221110000112334567788999999999999999998888753
No 364
>PRK10941 hypothetical protein; Provisional
Probab=69.78 E-value=31 Score=41.28 Aligned_cols=79 Identities=22% Similarity=0.205 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 802 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 881 (1713)
Q Consensus 802 a~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d 881 (1713)
...+.||-.+|...++++.|+.+.++.+.+ .+++|. -+...|.+|.++|.+..|+.-|+.-++.+ ++
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l-----~P~dp~---e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P~ 247 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQF-----DPEDPY---EIRDRGLIYAQLDCEHVALSDLSYFVEQC-----PE 247 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----CC
Confidence 356788999999999999999999999886 455554 34568999999999999999999888876 55
Q ss_pred cHHHHHHHHHHH
Q 000292 882 HIQTAASYHAIA 893 (1713)
Q Consensus 882 ~~~tA~a~~nLA 893 (1713)
.+....+...+.
T Consensus 248 dp~a~~ik~ql~ 259 (269)
T PRK10941 248 DPISEMIRAQIH 259 (269)
T ss_pred chhHHHHHHHHH
Confidence 555544444333
No 365
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.13 E-value=3.1e+02 Score=36.13 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=56.0
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC----------------cHHHHHHHHHHHHHHHHcCCh
Q 000292 839 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD----------------HIQTAASYHAIAIALSLMEAY 902 (1713)
Q Consensus 839 dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d----------------~~~tA~a~~nLA~ay~~lGd~ 902 (1713)
.+|..+..+..+|.++..+|+.+-|..+.+++|-...+++.+. ......+++..-+-+...|-+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 4688889999999999999999999999999998777654321 011223344444556678999
Q ss_pred HHHHHHHHHHHH
Q 000292 903 PLSVQHEQTTLQ 914 (1713)
Q Consensus 903 eeAle~lekALe 914 (1713)
..|.++++-.+.
T Consensus 359 rTA~E~cKllls 370 (665)
T KOG2422|consen 359 RTALEWCKLLLS 370 (665)
T ss_pred HHHHHHHHHHhh
Confidence 999998876553
No 366
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=68.80 E-value=2.3e+02 Score=35.27 Aligned_cols=58 Identities=14% Similarity=0.061 Sum_probs=34.9
Q ss_pred CCchHHHHhhhccchhhccCCHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHh
Q 000292 694 SPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVAV 751 (1713)
Q Consensus 694 ~~F~~eDIlnl~PvvK~~~~~s~~A~~LlelA~~~l~qG---------~~eeAle~lqeAL~l~eqv 751 (1713)
..|.--|...-...+.........+..+|+.|..+.+.| .+.+|..+|++|-..++-+
T Consensus 87 v~F~W~d~~~~~~~~~~~sl~fEka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l 153 (353)
T cd09246 87 VSFSWYDAFRPHRKATQANVHFEKAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHL 153 (353)
T ss_pred ceeEeeccCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 344444432222233444455666778888887765433 2678899999988876543
No 367
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.73 E-value=36 Score=42.65 Aligned_cols=120 Identities=14% Similarity=-0.070 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Q 000292 803 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH----PNTAATYINVAMMEEGLGN---VHVALRYLHKALKCNQ 875 (1713)
Q Consensus 803 ~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dh----P~~a~a~~NLA~iy~~lG~---~eeAle~lekALei~e 875 (1713)
..|+.-|........|++|+.++-.|-+.+... +..- -..+..-..+-|+|+.+.+ ...|..-+..|-+.+.
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe~F~~C-d~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADESFSLC-DSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh-hHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 445666777777888888888888877765442 1110 0112233446677777765 4577777777777777
Q ss_pred HhcCCCc-----------HHH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000292 876 RLLGPDH-----------IQT---AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 923 (1713)
Q Consensus 876 k~~G~d~-----------~~t---A~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~d 923 (1713)
..+|.++ |.. ...+..-|.+.+.+|+-++|.++++.|...+.+..-.+
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d 304 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKIND 304 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccc
Confidence 6666553 332 34455668889999999999999999988877654333
No 368
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.52 E-value=1.8e+02 Score=35.58 Aligned_cols=28 Identities=14% Similarity=-0.045 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000292 882 HIQTAASYHAIAIALSLMEAYPLSVQHE 909 (1713)
Q Consensus 882 ~~~tA~a~~nLA~ay~~lGd~eeAle~l 909 (1713)
..+.+.+...||.+|...++|+.|.+.+
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L 126 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQVL 126 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3467788899999999999999987755
No 369
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=68.48 E-value=43 Score=39.56 Aligned_cols=57 Identities=25% Similarity=0.301 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHH
Q 000292 776 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLL 832 (1713)
Q Consensus 776 ~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~l-G~~eeALe~yerALeL~ 832 (1713)
.+.|...|++|+.++...+.+.||-......|.+.+|+.. ++.++|.+..++|+.-.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4588999999999988878889998888888888888765 88999998888887654
No 370
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=68.12 E-value=31 Score=47.85 Aligned_cols=108 Identities=18% Similarity=0.108 Sum_probs=72.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 000292 728 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 807 (1713)
Q Consensus 728 ~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~n 807 (1713)
++....|++|+..|++.-.-+ -| ..+--.+.+.+|.....+-.-..--..+.+||..++++.| .+....-|..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 557 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESF---PG--RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPLEYLG 557 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcC---CC--cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCchHHHh
Confidence 444555666666666644332 12 2233456677777776553333333677778877777643 4556678899
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 000292 808 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 847 (1713)
Q Consensus 808 LA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~ 847 (1713)
-|.+|.++|+|++-+++|.-|++.+ +.||.+....
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 592 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLR 592 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHH
Confidence 9999999999999999999999864 5688776543
No 371
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.11 E-value=1.6e+02 Score=36.07 Aligned_cols=96 Identities=20% Similarity=0.101 Sum_probs=63.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC--------
Q 000292 725 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL-------- 796 (1713)
Q Consensus 725 A~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~-------- 796 (1713)
-+......+-.+-++...+||++ +++.+.+|..||.--. --..+|..++++|+...+.++..
T Consensus 191 MQ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~ 260 (556)
T KOG3807|consen 191 MQKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQS 260 (556)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 34555666777777778888877 5777888877775322 23567888888888775543321
Q ss_pred ---------CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000292 797 ---------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 830 (1713)
Q Consensus 797 ---------Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALe 830 (1713)
|..-...+-..||.|-.++|+..+|.+.++...+
T Consensus 261 ~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 261 PQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred cchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 1111233445789999999999999888876543
No 372
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=68.02 E-value=64 Score=40.03 Aligned_cols=57 Identities=16% Similarity=0.049 Sum_probs=33.8
Q ss_pred CCchHHHHhhhccchhhccCCHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q 000292 694 SPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVA 750 (1713)
Q Consensus 694 ~~F~~eDIlnl~PvvK~~~~~s~~A~~LlelA~~~l~qG---------~~eeAle~lqeAL~l~eq 750 (1713)
..|.--|...-...+.........+..+|+.|..+.+.+ .+..|..+|++|-..++-
T Consensus 83 v~F~W~d~~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~ 148 (348)
T cd09242 83 VDFTWYDAFYKSKKVKQHSLAFEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQY 148 (348)
T ss_pred ceeeeeecCCCCCceeecchHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 344444443312223334445566777888887765443 367789999998887654
No 373
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.36 E-value=83 Score=35.44 Aligned_cols=99 Identities=11% Similarity=0.003 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000292 802 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA--ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 879 (1713)
Q Consensus 802 a~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a--~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G 879 (1713)
..+.+..|.+....|+...|..+|..+-.. ...|... .+...-|.++...|-|++-.. ..+.+-+
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlraa~lLvD~gsy~dV~s-------rvepLa~ 160 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLRAAYLLVDNGSYDDVSS-------RVEPLAG 160 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHHHHHHHhccccHHHHHH-------HhhhccC
Confidence 456678899999999999999999886542 1234333 233445677778888775433 3345557
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 880 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 880 ~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekAL 913 (1713)
+..+....+...||.+-++.|+|..|...|.+..
T Consensus 161 d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 161 DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 7788888889999999999999999999987544
No 374
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=67.26 E-value=3e+02 Score=34.09 Aligned_cols=93 Identities=10% Similarity=0.134 Sum_probs=66.0
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 000292 812 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA 891 (1713)
Q Consensus 812 y~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~n 891 (1713)
..+.++.++|++++++..+-....-.+ -.+..+...+|.++...|+..++.+.+...-.......+-.. .+-..||.
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~-~Vh~~fY~ 161 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTS-NVHSSFYS 161 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCCh-hhhhhHHH
Confidence 345668999999999998876653222 245677788999999999999999999988887766654433 23344555
Q ss_pred HH-HHHHHcCChHHHHH
Q 000292 892 IA-IALSLMEAYPLSVQ 907 (1713)
Q Consensus 892 LA-~ay~~lGd~eeAle 907 (1713)
++ +.|...|+|..+..
T Consensus 162 lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 55 45566788765543
No 375
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=67.19 E-value=95 Score=39.02 Aligned_cols=114 Identities=18% Similarity=0.021 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHhcCCHHHHHHHHHHHH--------
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLL--AVVLYHTGDFNQATIYQQKAL-------- 787 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~L--A~vy~~lGd~deAle~~~KAL-------- 787 (1713)
+..-...++.++.+++|..|..+|.+++... ..+........|..| |..+|..-++++|.+++.+.+
T Consensus 130 ~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~---l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~ 206 (380)
T TIGR02710 130 GNTEQGYARRAINAFDYLFAHARLETLLRRL---LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQ 206 (380)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcc---cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhh
Confidence 4444556678899999999999999988652 111122223444444 445577889999999998211
Q ss_pred -----------HHHHHhcCC------------CCch--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 788 -----------DINERELGL------------DHPD--TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 834 (1713)
Q Consensus 788 -----------~I~Er~lG~------------Dhp~--ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~ 834 (1713)
.......+. .++. +...+..=|.--..+|+|+.|+..+.+++++..+
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q 278 (380)
T TIGR02710 207 VTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQ 278 (380)
T ss_pred hhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 000000000 1111 1111222233445789999999999999998654
No 376
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=67.11 E-value=3.2e+02 Score=38.44 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=10.2
Q ss_pred HHCCCHHHHHHHHHHHHHHH
Q 000292 855 EGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 855 ~~lG~~eeAle~lekALei~ 874 (1713)
...|+...|..+..+|.+..
T Consensus 1536 ~T~~di~ra~~L~s~A~~a~ 1555 (1758)
T KOG0994|consen 1536 RTKGDIARAENLQSEAERAR 1555 (1758)
T ss_pred hhhhhHHHHHHHHHHHHHHH
Confidence 34455555555555554443
No 377
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.00 E-value=2.1e+02 Score=37.52 Aligned_cols=151 Identities=15% Similarity=0.068 Sum_probs=87.0
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-------------CCchhHHHH---HHHHHHHHHcCCh
Q 000292 755 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL-------------DHPDTMKSY---GDLAVFYYRLQHT 818 (1713)
Q Consensus 755 dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~-------------Dhp~ta~ay---~nLA~vy~~lG~~ 818 (1713)
.+|.....+..+|.++..+|+.+.|..+.+++|-..++.+-+ .++..-..| +.--..+...|-+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 456777889999999999999999999999999998886532 112211122 2222334567888
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 000292 819 ELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 897 (1713)
Q Consensus 819 eeALe~yerALeL~~~i~G~d-hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~ 897 (1713)
..|+++++-.+.+ .+. +|..+ ++.+-.......+|+==+++++..-... ++. .-|..+.+ ..||..|.
T Consensus 359 rTA~E~cKlllsL-----dp~eDPl~~--l~~ID~~ALrareYqwiI~~~~~~e~~n-~l~--~~PN~~yS-~AlA~f~l 427 (665)
T KOG2422|consen 359 RTALEWCKLLLSL-----DPSEDPLGI--LYLIDIYALRAREYQWIIELSNEPENMN-KLS--QLPNFGYS-LALARFFL 427 (665)
T ss_pred HHHHHHHHHHhhc-----CCcCCchhH--HHHHHHHHHHHHhHHHHHHHHHHHHhhc-cHh--hcCCchHH-HHHHHHHH
Confidence 8888888777664 333 45332 2223333344455555555554432221 110 11222222 23455555
Q ss_pred HcCC---hHHHHHHHHHHHHHH
Q 000292 898 LMEA---YPLSVQHEQTTLQIL 916 (1713)
Q Consensus 898 ~lGd---~eeAle~lekALeI~ 916 (1713)
.... .+.|+..+.+|+..+
T Consensus 428 ~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 428 RKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred hcCChhhHHHHHHHHHHHHHhC
Confidence 5544 566777777777654
No 378
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=66.92 E-value=2e+02 Score=37.10 Aligned_cols=94 Identities=20% Similarity=0.160 Sum_probs=41.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHH-----HHHh
Q 000292 726 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK-------ALDI-----NERE 793 (1713)
Q Consensus 726 ~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~K-------AL~I-----~Er~ 793 (1713)
+.....++++++..+.... .+...+ | ..-...++..+..+|.++.|+.+.+. ||++ +.+.
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i-----~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNI-----P--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccC-----C--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHH
Confidence 4456678888876666311 111111 1 12244566666677777766654322 1110 0000
Q ss_pred cCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 794 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 829 (1713)
Q Consensus 794 lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerAL 829 (1713)
. ........|..||.....+|+++-|.++|+++-
T Consensus 341 a--~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 341 A--KELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp C--CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred H--HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 0 111223356666666666666666666666653
No 379
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=66.56 E-value=36 Score=39.91 Aligned_cols=62 Identities=26% Similarity=0.270 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000292 779 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 856 (1713)
Q Consensus 779 Ale~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~ 856 (1713)
|..||++|+.+ .|.....|++||.++...|+.=.|+-+|-|++.. .+|. ..+..||..++..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 78899999998 4788999999999999999999999999999853 3454 5567788887776
No 380
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=66.46 E-value=77 Score=41.24 Aligned_cols=71 Identities=15% Similarity=0.043 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000292 803 KSYGDLAVFYYRL--QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 876 (1713)
Q Consensus 803 ~ay~nLA~vy~~l--G~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek 876 (1713)
.++.+||.+.... ..-..++.+|.+|+...+..|+..|- .-|..+|..|.+.++|.+|+.++-+|-.....
T Consensus 278 mALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 278 MALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp HHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred hhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554432 23467899999999999998886553 34666899999999999999999888766543
No 381
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.98 E-value=9.1 Score=48.06 Aligned_cols=72 Identities=18% Similarity=0.149 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 762 AYSLLAVVLYHTGDFNQATIYQQKALDINE-RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 834 (1713)
Q Consensus 762 ay~~LA~vy~~lGd~deAle~~~KAL~I~E-r~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~ 834 (1713)
++..|.+++..+|||..|++...-. ++.+ .++....+-.+..++.+|.+|..+++|.+|++.|...|-...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778999999999999876432 2211 1122223345678899999999999999999999999876554
No 382
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=65.76 E-value=1.3e+02 Score=37.21 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 885 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 885 tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
.+.+++..|..+...+++-+|+.+++.|...++.
T Consensus 254 ~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~ 287 (346)
T cd09240 254 HALAEYHQSLVAKAQKKFGEEIARLQHALELIKT 287 (346)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 4555666777777777888888888877765543
No 383
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=65.24 E-value=1.3e+02 Score=37.87 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCCchh-----HHHHHHHHHHHHH-------cCC-------
Q 000292 761 GAYSLLAVVLYH----TGDFNQATIYQQKALDINERELGLDHPDT-----MKSYGDLAVFYYR-------LQH------- 817 (1713)
Q Consensus 761 ~ay~~LA~vy~~----lGd~deAle~~~KAL~I~Er~lG~Dhp~t-----a~ay~nLA~vy~~-------lG~------- 817 (1713)
.+...++.+|.. -.+.+.-+.++++=+++.+.++..-+|.. -..++.||.+|.. ..+
T Consensus 172 ~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~ 251 (371)
T PF12309_consen 172 QILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYYLNLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNE 251 (371)
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 344444444433 36777888888888888877665433321 1334455555532 221
Q ss_pred -------------hHHHHHHHHHHHHHHHHhcCCC---------ChhHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH
Q 000292 818 -------------TELALKYVKRALYLLHLTCGPS---------HPNTAATYINVAMMEEGL--GNVHVALRYLHKALKC 873 (1713)
Q Consensus 818 -------------~eeALe~yerALeL~~~i~G~d---------hP~~a~a~~NLA~iy~~l--G~~eeAle~lekALei 873 (1713)
...|+.+|+.-+..++..-+.. ......++..+|.+|.+. ++..+=++.+.++|..
T Consensus 252 ~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~ 331 (371)
T PF12309_consen 252 PPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEY 331 (371)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHH
Confidence 2456666666666655321011 122467889999999876 4555555555555555
Q ss_pred H
Q 000292 874 N 874 (1713)
Q Consensus 874 ~ 874 (1713)
+
T Consensus 332 y 332 (371)
T PF12309_consen 332 Y 332 (371)
T ss_pred H
Confidence 4
No 384
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.12 E-value=35 Score=40.97 Aligned_cols=78 Identities=23% Similarity=0.277 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000292 718 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 797 (1713)
Q Consensus 718 A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~D 797 (1713)
...+...+..|...|.+.+|+++.++++.+ +|..-..+..|-.++..+||--.|...|.+--...++-+|.+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 344555678899999999999999999987 666677888899999999999999999999988888888876
Q ss_pred CchhHH
Q 000292 798 HPDTMK 803 (1713)
Q Consensus 798 hp~ta~ 803 (1713)
-.+.+.
T Consensus 351 vddsie 356 (361)
T COG3947 351 VDDSIE 356 (361)
T ss_pred cchhHH
Confidence 555443
No 385
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=64.77 E-value=22 Score=45.39 Aligned_cols=98 Identities=17% Similarity=0.035 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHH
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---GDFNQATIYQQKALDINER 792 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~l---Gd~deAle~~~KAL~I~Er 792 (1713)
..++.+++.|.-.+..+....|+..|.+++.. .+....+|.+.|.+++.. |+.-.|+.-+..|+.+
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--- 440 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--- 440 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC---
Confidence 34555666666666667778888888888765 355667888888888775 5566677767777664
Q ss_pred hcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000292 793 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 829 (1713)
Q Consensus 793 ~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerAL 829 (1713)
++-...+++.|+.++..++++.+|+.+...+.
T Consensus 441 -----n~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 441 -----NPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred -----ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 46677899999999999999999998765543
No 386
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.85 E-value=39 Score=30.58 Aligned_cols=29 Identities=28% Similarity=0.265 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 803 KSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 803 ~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
.+++.||..++++|+|++|+.+.+.+|++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 35788999999999999999999999986
No 387
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=63.79 E-value=58 Score=39.23 Aligned_cols=155 Identities=16% Similarity=0.080 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhH-----------HHH-HHHHHHHH--HcCChHHHHHHHHHHH
Q 000292 764 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM-----------KSY-GDLAVFYY--RLQHTELALKYVKRAL 829 (1713)
Q Consensus 764 ~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta-----------~ay-~nLA~vy~--~lG~~eeALe~yerAL 829 (1713)
-.++.++|..-+...|..-++.++...++++|.++.-+. ..+ ..++.+.. ..|....+...++++.
T Consensus 44 e~l~~llWe~~~~~~Ar~nLR~~l~~lRk~l~~~~~il~t~~~~~~L~~~~~~~iD~~~F~~~~~a~~~~~~~~~~~~~~ 123 (280)
T COG3629 44 EKLAGLLWEDSDPSRARANLRTTLHNLRKLLGDGDVILATEGPGVTLNPGADITIDAGRFEAEARAGLKARAGLRFEQAG 123 (280)
T ss_pred HHHHHhccCCCChhHHHHHHHHHHHHHHHhcCCcceeeecCCCceEecCccceeecHHHHHHhHhcccchhhhHHHHHHH
Confidence 345667777777788888888888888887772211100 000 12222221 2222233333455555
Q ss_pred HHHHH--hcCCCC-------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 000292 830 YLLHL--TCGPSH-------------PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAI 894 (1713)
Q Consensus 830 eL~~~--i~G~dh-------------P~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ 894 (1713)
+++.. ..+.+| ...+.++..++..+...|+++.++..+++.+.+. +..-..|..+-.
T Consensus 124 ~~~~~g~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--------p~~E~~~~~lm~ 195 (280)
T COG3629 124 ELLSEGPVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD--------PYDEPAYLRLME 195 (280)
T ss_pred HHhhcCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------ccchHHHHHHHH
Confidence 55442 111111 1124567778888889999999998888777653 444567778888
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 000292 895 ALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 926 (1713)
Q Consensus 895 ay~~lGd~eeAle~lekALeI~kk~LG~dh~~ 926 (1713)
+|...|+...|+..|++.......-+|.+-..
T Consensus 196 ~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~ 227 (280)
T COG3629 196 AYLVNGRQSAAIRAYRQLKKTLAEELGIDPAP 227 (280)
T ss_pred HHHHcCCchHHHHHHHHHHHHhhhhcCCCccH
Confidence 99999999999999999988877777776543
No 388
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=63.78 E-value=57 Score=35.81 Aligned_cols=92 Identities=20% Similarity=0.097 Sum_probs=67.2
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000292 712 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 791 (1713)
Q Consensus 712 ~~~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~E 791 (1713)
.|.......+.+.....+..++.+++..++. ++..+ .|.....-..-|+++...|+|.+|+..++....
T Consensus 4 qCs~~iv~gLi~~~~~aL~~~d~~D~e~lLd-ALrvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~--- 72 (153)
T TIGR02561 4 QCSNRLLGGLIEVLMYALRSADPYDAQAMLD-ALRVL-------RPNLKELDMFDGWLLIARGNYDEAARILRELLS--- 72 (153)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc---
Confidence 4566667778888888888999998877764 44442 455566666789999999999999999987643
Q ss_pred HhcCCCCchhHHHHHHHHHHHHHcCChH
Q 000292 792 RELGLDHPDTMKSYGDLAVFYYRLQHTE 819 (1713)
Q Consensus 792 r~lG~Dhp~ta~ay~nLA~vy~~lG~~e 819 (1713)
+.+....+-..++.|++.+|+.+
T Consensus 73 -----~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 73 -----SAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred -----cCCCchHHHHHHHHHHHhcCChH
Confidence 22334555566888888888763
No 389
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=63.08 E-value=55 Score=38.40 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHh
Q 000292 818 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 818 ~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~-lG~~eeAle~lekALei~ek~ 877 (1713)
.+.|...|++|+.+....+.+.||....+..|.+..|.. +|+.++|+...++|+.-....
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 378999999999999998899999999999999988754 899999999999988776443
No 390
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.07 E-value=2.4e+02 Score=31.95 Aligned_cols=132 Identities=14% Similarity=0.054 Sum_probs=91.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000292 722 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 801 (1713)
Q Consensus 722 lelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~t 801 (1713)
|..+.-+-+.+.-++|+.-|...-. .-+|.+ |. .+....|.+....|+-..|+.+|..+-.. ...|..
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lek---tg~g~Y-pv--LA~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~ 129 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEK---TGYGSY-PV--LARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQI 129 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHh---cCCCcc-hH--HHHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcch
Confidence 4445555677888888887765332 223332 33 35566899999999999999999887442 122333
Q ss_pred H--HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000292 802 M--KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 872 (1713)
Q Consensus 802 a--~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALe 872 (1713)
. .+...-|.++...|-|+.-.... +.+.++..|....+.-.||..-.+.|++..|..+|.+...
T Consensus 130 ~rd~ARlraa~lLvD~gsy~dV~srv-------epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 130 GRDLARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhHHHHHHHHHHHhccccHHHHHHHh-------hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3 34455577788888887654333 3334677788788888899999999999999999987665
No 391
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=62.37 E-value=5.6e+02 Score=35.02 Aligned_cols=26 Identities=27% Similarity=0.040 Sum_probs=18.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000292 847 YINVAMMEEGLGNVHVALRYLHKALK 872 (1713)
Q Consensus 847 ~~NLA~iy~~lG~~eeAle~lekALe 872 (1713)
++..|.+|...|++.+|...|+.|+.
T Consensus 938 ~~~aa~aye~~gK~~Ea~gay~sA~m 963 (1243)
T COG5290 938 HISAAKAYEVEGKYIEAHGAYDSALM 963 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677777777777777776654
No 392
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=62.21 E-value=15 Score=48.41 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCCcccccC
Q 000292 1509 HFSWQCNGNSNVPEFIPGPFLPGYHPMEFS 1538 (1713)
Q Consensus 1509 ~~~~~~~~~~~~~~f~p~~~~~~~~~~~~~ 1538 (1713)
.|.|-- .+| .|.-=-.+|.+|.-=-|.
T Consensus 628 r~nW~k-I~p--~d~s~~cFWvkv~Edk~e 654 (1102)
T KOG1924|consen 628 RFNWSK-IVP--RDLSENCFWVKVNEDKLE 654 (1102)
T ss_pred cCCccc-cCc--cccCccceeeecchhhcc
Confidence 356853 222 233335689999754443
No 393
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=61.67 E-value=4.1e+02 Score=33.30 Aligned_cols=34 Identities=9% Similarity=-0.121 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000292 884 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 917 (1713)
Q Consensus 884 ~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~k 917 (1713)
..+.+++..|......+++.+++.+++.|...++
T Consensus 250 f~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~ 283 (361)
T cd09239 250 YASIAHLHMGKQSEEQQKMGERVAYYQLANDKLE 283 (361)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778777778888888888888877543
No 394
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.38 E-value=54 Score=32.74 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=43.0
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 756 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 835 (1713)
Q Consensus 756 hp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i 835 (1713)
+|....+.+.+|..+...|++++|++.+...+..- +.. +-+.|.+.+-..+++
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d--------r~~---------------~~~~ar~~ll~~f~~---- 70 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRD--------RDY---------------EDDAARKRLLDIFEL---- 70 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---------TTC---------------CCCHHHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------ccc---------------cccHHHHHHHHHHHH----
Confidence 45566788888999999999999988877766531 100 113444444444443
Q ss_pred cCCCChhHHHHHHHHHHHH
Q 000292 836 CGPSHPNTAATYINVAMME 854 (1713)
Q Consensus 836 ~G~dhP~~a~a~~NLA~iy 854 (1713)
+|..||.+......|+.++
T Consensus 71 lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 71 LGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp H-TT-HHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHh
Confidence 3777887777666666554
No 395
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=61.16 E-value=8.6 Score=29.23 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 000292 761 GAYSLLAVVLYHTGDFNQATIYQQ 784 (1713)
Q Consensus 761 ~ay~~LA~vy~~lGd~deAle~~~ 784 (1713)
.++..||.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998875
No 396
>PRK10941 hypothetical protein; Provisional
Probab=60.82 E-value=63 Score=38.73 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000292 758 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 837 (1713)
Q Consensus 758 ~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G 837 (1713)
...+.+.+|-.+|...++++.|+.+.+..+.+ .|+...-+...|.+|.++|.+..|+.-++.-++.+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----- 245 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----- 245 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----
Confidence 34678889999999999999999999999886 34445556778999999999999999998887753
Q ss_pred CCChhHHHHHHHHH
Q 000292 838 PSHPNTAATYINVA 851 (1713)
Q Consensus 838 ~dhP~~a~a~~NLA 851 (1713)
++.|....+...+.
T Consensus 246 P~dp~a~~ik~ql~ 259 (269)
T PRK10941 246 PEDPISEMIRAQIH 259 (269)
T ss_pred CCchhHHHHHHHHH
Confidence 55565544443333
No 397
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=60.31 E-value=75 Score=44.29 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHHHH-cC
Q 000292 823 KYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA-IALSL-ME 900 (1713)
Q Consensus 823 e~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA-~ay~~-lG 900 (1713)
+.|.+||.-+...++. +....-|..-|.+|+.+|+|++-+++|.-|++.+ .+||......-.+- +++.. ..
T Consensus 533 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 605 (932)
T PRK13184 533 RDFTQALSEFSYLHGG--VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRDHLVYRLHESLYK 605 (932)
T ss_pred HHHHHHHHHHHHhcCC--CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHHHHHHH
Confidence 4566666666655432 2223446677899999999999999999999877 56666554432221 11111 12
Q ss_pred ChHHHHHHHHHHHHHHH
Q 000292 901 AYPLSVQHEQTTLQILR 917 (1713)
Q Consensus 901 d~eeAle~lekALeI~k 917 (1713)
....|+..+--++.++-
T Consensus 606 ~~~~~~~~~~~~~~~~~ 622 (932)
T PRK13184 606 HRREALVFMLLALWIAP 622 (932)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 33456666666665543
No 398
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.87 E-value=50 Score=45.57 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=8.2
Q ss_pred ccccCCCCCCCch
Q 000292 1401 LSASAVPFNPSPA 1413 (1713)
Q Consensus 1401 lsa~a~pfnps~~ 1413 (1713)
.+|++.|--|++.
T Consensus 710 ~~~~~~~~~~~t~ 722 (1049)
T KOG0307|consen 710 VGAAPTPKQPTTS 722 (1049)
T ss_pred cccCCCCCCCCCC
Confidence 5566666666665
No 399
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=59.53 E-value=37 Score=46.98 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=13.7
Q ss_pred cccccccccccccc--cCCCCCcceEEEE
Q 000292 1661 RNRKQTLRIPISLL--SRPYGSQSFKVIY 1687 (1713)
Q Consensus 1661 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 1687 (1713)
||| +---|||+-= +=|-|.+-|.|+=
T Consensus 309 rnq-~~aa~pI~~~pss~~~g~~l~E~~~ 336 (1639)
T KOG0905|consen 309 RNQ-AYAAAPIGEPPSSCPGGQELIEVPS 336 (1639)
T ss_pred hhh-hhhcCcCCCCcccCCCcceeeeccc
Confidence 344 4456776644 4455655555543
No 400
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=59.46 E-value=2.4e+02 Score=34.68 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 884 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 884 ~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
..+.+++.+|..+...+++.+|+.+++.|...++.
T Consensus 249 ~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~ 283 (345)
T cd09034 249 FKALAYYYHGLKLDEANKIGEAIARLQAALELLKE 283 (345)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 34566677777777777888888888877765543
No 401
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=59.08 E-value=4.5e+02 Score=32.85 Aligned_cols=33 Identities=15% Similarity=0.008 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 884 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 884 ~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~ 916 (1713)
..+.+++..|..+...+++-+|+..++.|...+
T Consensus 245 f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l 277 (353)
T cd09246 245 FRAEALYRAAKDLHEKEDIGEEIARLRAASDAL 277 (353)
T ss_pred HHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHH
Confidence 456677788888888899999999999887644
No 402
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=59.05 E-value=3.3e+02 Score=38.35 Aligned_cols=20 Identities=10% Similarity=-0.167 Sum_probs=10.1
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 000292 811 FYYRLQHTELALKYVKRALY 830 (1713)
Q Consensus 811 vy~~lG~~eeALe~yerALe 830 (1713)
++...++...|..+...|.+
T Consensus 1534 L~~T~~di~ra~~L~s~A~~ 1553 (1758)
T KOG0994|consen 1534 LSRTKGDIARAENLQSEAER 1553 (1758)
T ss_pred HHhhhhhHHHHHHHHHHHHH
Confidence 33444555555555555444
No 403
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.02 E-value=51 Score=29.88 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 846 TYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 846 a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
.++.+|..+.++|+|++|+.+.+.+|++-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 56779999999999999999999999885
No 404
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=58.00 E-value=61 Score=35.95 Aligned_cols=89 Identities=13% Similarity=0.048 Sum_probs=62.6
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000292 799 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 878 (1713)
Q Consensus 799 p~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~ 878 (1713)
......+..+..+-...++.+++..++....-+ .|........-|+++...|+|.+|+..|+...+-
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~----- 73 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER----- 73 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----
Confidence 345566777777778888888888776554433 3555556666899999999999999999986432
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChH
Q 000292 879 GPDHIQTAASYHAIAIALSLMEAYP 903 (1713)
Q Consensus 879 G~d~~~tA~a~~nLA~ay~~lGd~e 903 (1713)
.+....+--.+|.++..+||..
T Consensus 74 ---~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 74 ---APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred ---CCCChHHHHHHHHHHHHcCChH
Confidence 2333344444688888888864
No 405
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=57.50 E-value=78 Score=34.30 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 843 TAATYINVAMMEEGLGNV---HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 919 (1713)
Q Consensus 843 ~a~a~~NLA~iy~~lG~~---eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~ 919 (1713)
...+.+++|+++....+. .+.+.+++..++ . ......-.++|.||..+.+.++|+.|+.+....++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~-----~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~---- 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-S-----AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET---- 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-h-----cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh----
Confidence 456788999999876654 455566655554 1 222334567888999999999999999999877754
Q ss_pred cCCCCHHHHHHHHH
Q 000292 920 LGPDDLRTQDAAAW 933 (1713)
Q Consensus 920 LG~dh~~t~ea~~~ 933 (1713)
.+++.+.......
T Consensus 101 -e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 101 -EPNNRQALELKET 113 (149)
T ss_pred -CCCcHHHHHHHHH
Confidence 3455554444333
No 406
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.36 E-value=4e+02 Score=40.53 Aligned_cols=110 Identities=15% Similarity=-0.030 Sum_probs=78.2
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 798 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 798 hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
...++.+|.++|.+....|+++.|..++-.|.+.. ...++...|..+...|+-..|+..+++.+..+..-
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 45678999999999999999999999998887742 35667788999999999999999999999776332
Q ss_pred c-C--------CCcHHHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHH
Q 000292 878 L-G--------PDHIQTAASYHAIAIALSLMEAYP--LSVQHEQTTLQILR 917 (1713)
Q Consensus 878 ~-G--------~d~~~tA~a~~nLA~ay~~lGd~e--eAle~lekALeI~k 917 (1713)
+ + .+......+...++......++++ +-+.+|+++.++..
T Consensus 1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 1 1 111112234445556666666642 33456666666654
No 407
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=57.22 E-value=32 Score=41.21 Aligned_cols=53 Identities=28% Similarity=0.536 Sum_probs=26.6
Q ss_pred ccccccCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccC----------CCCCCCCcc
Q 000292 1478 QPLPFMYPPYTQPQGVPTSTFPVTTSAFHHNHFSWQCNGNSNVPEFIP----------GPFLPGYHP 1534 (1713)
Q Consensus 1478 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~f~p----------~~~~~~~~~ 1534 (1713)
-|.|=..+|-.--|+.+.+-| +-|.|+.|--+.-+-+.+.-|.| .++|||.-|
T Consensus 133 ap~P~~~~Pa~lGqa~~~~~~----~f~~p~nfd~~~lLgq~~p~~ap~~~df~a~~~rQf~Pg~~~ 195 (407)
T PF04625_consen 133 APAPAAFQPAILGQAAPQNFF----SFFNPSNFDASSLLGQALPQMAPPNPDFFAQLQRQFWPGMPP 195 (407)
T ss_pred CCCCCCCCccccccccccccc----cccCccccchhhhhhccCCCCCCCCHHHHHHHHHHhCCCCCC
Confidence 355545555434344443332 23456666655433344333333 468999754
No 408
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=56.99 E-value=23 Score=42.52 Aligned_cols=65 Identities=23% Similarity=0.166 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 789 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I 789 (1713)
.|...+..|.-...+|+.++|..+|+.|+++ .|....++..+|...-...+.-+|-.+|-+||.+
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 3555666677778899999999999999988 3444567888899888889999999999999887
No 409
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=56.96 E-value=2.5e+02 Score=34.97 Aligned_cols=40 Identities=10% Similarity=-0.054 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHh
Q 000292 712 ACSSADGRQLLESSKTALDKGK---------LEDAVTYGTKALAKLVAV 751 (1713)
Q Consensus 712 ~~~s~~A~~LlelA~~~l~qG~---------~eeAle~lqeAL~l~eqv 751 (1713)
......+..+|+.|..+.+.|. +.+|..+|++|-..++-+
T Consensus 113 ~l~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l 161 (346)
T cd09240 113 SLGYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHL 161 (346)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777766644332 577899999988876543
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=56.70 E-value=15 Score=46.11 Aligned_cols=74 Identities=20% Similarity=0.001 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000292 804 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 877 (1713)
Q Consensus 804 ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~ 877 (1713)
++..|..++..+|+|..|++.++-.---.+..+..--+-...+++.+|-+|..+++|.+|++.|...|-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567888999999999998876431111112222334457789999999999999999999999998876554
No 411
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=56.42 E-value=83 Score=36.83 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 000292 737 AVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 814 (1713)
Q Consensus 737 Ale~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~ 814 (1713)
|+.+|.+|+.+ .|..+..|+.||.++...|+.-.|+-+|-+++.. ..|. ..+..||..++..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 68899999988 4777899999999999999999999999999854 2444 5677888887776
No 412
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=54.70 E-value=1.1e+02 Score=33.21 Aligned_cols=69 Identities=29% Similarity=0.264 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 759 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD-TMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 759 ~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~-ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
...+.+++|+++....+-+. .++.+.+.+.++...||. .-.+.+.||.-+++.++|++|+.|....|+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~d----v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTED----VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHH----HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 45678889998888766432 355566666655434444 4477788999999999999999999988874
No 413
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.24 E-value=4.5e+02 Score=37.29 Aligned_cols=133 Identities=19% Similarity=0.133 Sum_probs=73.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH------hcCC----HHHHH
Q 000292 711 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLY------HTGD----FNQAT 780 (1713)
Q Consensus 711 ~~~~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~------~lGd----~deAl 780 (1713)
..+.......-+.+|..|+..|...+|+.+|.+|+.-. |... ++..+..-.. ..|+ -..|+
T Consensus 913 ~wc~vlk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~----ge~~-----aL~~lv~~~~p~~~sv~dG~t~s~e~t~l 983 (1480)
T KOG4521|consen 913 SWCRVLKPVIRFMLGIAYLGTGEPVKALNCFQSALSGF----GEGN-----ALRKLVYFLLPKRFSVADGKTPSEELTAL 983 (1480)
T ss_pred hhhhhhHHHHHHhhheeeecCCchHHHHHHHHHHhhcc----ccHH-----HHHHHHHHhcCCCCchhcCCCCCchHHHH
Confidence 35555556666778899999999999999999998631 1111 1111110000 1111 11234
Q ss_pred HHHHHHHHHHHHh----------------cCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000292 781 IYQQKALDINERE----------------LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 844 (1713)
Q Consensus 781 e~~~KAL~I~Er~----------------lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a 844 (1713)
.||.+++++.++. ++.+.|..+..+.++=..+..+|.+-+|.+.+-+ .++....-
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---------npdserrr 1054 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---------NPDSERRR 1054 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc---------CCcHHHHH
Confidence 4444444444432 3566666667777666666777777666544322 12323334
Q ss_pred HHHHHHHHHHHHCCCHH
Q 000292 845 ATYINVAMMEEGLGNVH 861 (1713)
Q Consensus 845 ~a~~NLA~iy~~lG~~e 861 (1713)
.++..+-.++.+.|+++
T Consensus 1055 dcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1055 DCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHHHHhccchH
Confidence 55666666666666654
No 414
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.76 E-value=1e+02 Score=30.81 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=27.3
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 840 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 840 hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
+|....+.+.+|..+...|++++|++.+-++++..
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 46667888999999999999999999887766543
No 415
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=53.41 E-value=2.4e+02 Score=35.16 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHh
Q 000292 713 CSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVAV 751 (1713)
Q Consensus 713 ~~s~~A~~LlelA~~~l~qG---------~~eeAle~lqeAL~l~eqv 751 (1713)
.....+..+|+.|..+.+.| .+.+|..+|++|-..++-+
T Consensus 101 l~fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l 148 (355)
T cd09241 101 LKFERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYI 148 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 34555777888877765433 3678999999988876543
No 416
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.33 E-value=1.1e+02 Score=41.51 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 783 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 783 ~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
|.-|+.+++.. +.+...+..+....|..++..|++++|..+|-+++..
T Consensus 350 y~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 350 YKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34444444432 3344456678888899999999999999999999864
No 417
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=53.15 E-value=1.4e+02 Score=36.11 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000292 776 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 855 (1713)
Q Consensus 776 ~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~ 855 (1713)
|..-+..+++++.- ..+.++..++..+...|+++.+...+++.+.+ ||..-..|..+-..|.
T Consensus 137 f~~WV~~~R~~l~e----------~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~ 198 (280)
T COG3629 137 FDEWVLEQRRALEE----------LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYL 198 (280)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHH
Confidence 45555555555542 34678899999999999999999999998874 5666677888888999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000292 856 GLGNVHVALRYLHKALKCNQRLLGPDHIQ 884 (1713)
Q Consensus 856 ~lG~~eeAle~lekALei~ek~~G~d~~~ 884 (1713)
..|+...|+..|++.-....+-+|.+...
T Consensus 199 ~~g~~~~ai~~y~~l~~~~~edlgi~P~~ 227 (280)
T COG3629 199 VNGRQSAAIRAYRQLKKTLAEELGIDPAP 227 (280)
T ss_pred HcCCchHHHHHHHHHHHHhhhhcCCCccH
Confidence 99999999999999888766666655433
No 418
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=52.81 E-value=3e+02 Score=33.76 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=69.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc---------CC
Q 000292 768 VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC---------GP 838 (1713)
Q Consensus 768 ~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~---------G~ 838 (1713)
...++..+..+-+.....|++| ++..+.+|..||.-. .--..+|.+++++||+..+..+ |.
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~ 261 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSP 261 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc
Confidence 3334444555555666677766 356677777776432 2335678888888877654432 22
Q ss_pred CC--------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCCh
Q 000292 839 SH--------PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY 902 (1713)
Q Consensus 839 dh--------P~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~ 902 (1713)
.+ .-...+...||++-.++|+..+|.+.++...+-.. -.....++-||-.++..+.-|
T Consensus 262 ~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p------l~t~lniheNLiEalLE~QAY 327 (556)
T KOG3807|consen 262 QHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP------LLTMLNIHENLLEALLELQAY 327 (556)
T ss_pred chhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc------HHHHHHHHHHHHHHHHHHHHH
Confidence 11 11234456789999999999999999886654321 112334445555555544433
No 419
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=52.38 E-value=18 Score=27.50 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000292 803 KSYGDLAVFYYRLQHTELALKYVKR 827 (1713)
Q Consensus 803 ~ay~nLA~vy~~lG~~eeALe~yer 827 (1713)
.++.+||.++..+|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3578999999999999999988753
No 420
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.82 E-value=4.8e+02 Score=36.10 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 765 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 834 (1713)
Q Consensus 765 ~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~ 834 (1713)
.+-.+|...|+|++|+++.+..-.. .-..+..-|.+|+..++|..|.++|-+.+.-++.
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p~~-----------le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRPDA-----------LETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCHHH-----------HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 3457888999999998877644221 1246777899999999999999988887665443
No 421
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.76 E-value=3.1e+02 Score=35.71 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000292 888 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 920 (1713)
Q Consensus 888 a~~nLA~ay~~lGd~eeAle~lekALeI~kk~L 920 (1713)
-++.+|..|...++|.+|+.+|.+|+....+..
T Consensus 424 RC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~ 456 (593)
T KOG2460|consen 424 RCFYIAVSYQAKKKYSEALALYVRAYSYLQEVN 456 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367789999999999999999999988776553
No 422
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.18 E-value=33 Score=42.23 Aligned_cols=65 Identities=11% Similarity=-0.053 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000292 802 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 866 (1713)
Q Consensus 802 a~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~ 866 (1713)
+.-+...|.-.+.++++++|...|..|..++..+||..|-.+...++..|..++.+++++.+.-.
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45567788899999999999999999999999999999999999999999999998887765543
No 423
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.58 E-value=3e+02 Score=34.09 Aligned_cols=30 Identities=7% Similarity=-0.145 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000292 887 ASYHAIAIALSLMEAYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 887 ~a~~nLA~ay~~lGd~eeAle~lekALeI~ 916 (1713)
.+-+.-|..+...|++.++..++.+++-|.
T Consensus 214 Yv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~ 243 (449)
T COG3014 214 YVSYLSGLFYALNGDVNKGLGYLNEAYGIS 243 (449)
T ss_pred HHHHHHHHhcccCccHhHHHHHHHHHhccC
Confidence 333444666666777777777777766553
No 424
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.16 E-value=2.9e+02 Score=33.47 Aligned_cols=134 Identities=17% Similarity=0.104 Sum_probs=82.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 000292 727 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 806 (1713)
Q Consensus 727 ~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~ 806 (1713)
..+..|++-+|.+.|+..+..+... ..|.......+.-+.+++..++..-|..+.-..++.+++.. ..+......
T Consensus 15 a~~~~~d~Yeahqm~RTl~fR~~~~--K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~---~ad~~~~~a 89 (312)
T KOG3024|consen 15 ASIELGDYYEAHQMYRTLVFRYTRQ--KAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAE---VADSLLKVA 89 (312)
T ss_pred hccccccHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH---hhHhHHHHH
Confidence 3345567778887777666554433 23444445555667777777777777776666666665521 111222235
Q ss_pred HHHHHHHHcCChHHHHH-HHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000292 807 DLAVFYYRLQHTELALK-YVKRALYLLHLTCGP---SHPNTAATYINVAMMEEGLGNVHVALRYLHK 869 (1713)
Q Consensus 807 nLA~vy~~lG~~eeALe-~yerALeL~~~i~G~---dhP~~a~a~~NLA~iy~~lG~~eeAle~lek 869 (1713)
||+.+....+.-+..+. +.++|++.... +|. .|| ..+..||..+...+++.+|..+|-.
T Consensus 90 nl~~ll~e~~~~eper~~~v~raikWS~~-~~~~k~G~p---~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIKWSKE-FGEGKYGHP---ELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHhh-cCCCCCCCH---HHHHHHHHHHHhcccHHHHHhHhhh
Confidence 67777766666655554 55666665444 322 355 4566789999999999999988853
No 425
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=48.66 E-value=2.8e+02 Score=34.68 Aligned_cols=37 Identities=11% Similarity=-0.081 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHH-------c-----CCHHHHHHHHHHHHHHHH
Q 000292 713 CSSADGRQLLESSKTALD-------K-----GKLEDAVTYGTKALAKLV 749 (1713)
Q Consensus 713 ~~s~~A~~LlelA~~~l~-------q-----G~~eeAle~lqeAL~l~e 749 (1713)
.....+..+++.|..+.+ . ....+|..+|++|-..+.
T Consensus 104 l~fEk~sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~ 152 (353)
T cd09243 104 AIFELASMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQ 152 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 344556667777766632 1 125678888888887654
No 426
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=48.57 E-value=8e+02 Score=32.64 Aligned_cols=172 Identities=15% Similarity=-0.009 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 719 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 798 (1713)
Q Consensus 719 ~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dh 798 (1713)
..+..-.......|+++...-+|++++--+.. .-..|...+.-....|+..-|-..++.+.++. +
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~--------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-------~ 362 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCAL--------YDEFWIKYARWMESSGDVSLANNVLARACKIH-------V 362 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh--------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-------C
Confidence 33433345556789999999999998865422 23456667777777799998888888888774 3
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000292 799 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 878 (1713)
Q Consensus 799 p~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~ 878 (1713)
+.+..+...-|.+....|+++.|...|++...- -|....+-..-..+...+|+.+.+.. +...+... .-
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~--~~ 431 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWERRKGNLEDANY-KNELYSSI--YE 431 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHh--cc
Confidence 445556666788888999999999999987753 24445544445666777888887775 33333322 11
Q ss_pred CCCcH-HHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHH
Q 000292 879 GPDHI-QTAASYHAIAIAL-SLMEAYPLSVQHEQTTLQIL 916 (1713)
Q Consensus 879 G~d~~-~tA~a~~nLA~ay-~~lGd~eeAle~lekALeI~ 916 (1713)
|..+. .+...+...++.. .-.++-+.|...+.+++++.
T Consensus 432 ~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 432 GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 22222 2334455556554 35678888888888887663
No 427
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=48.18 E-value=3.4e+02 Score=35.86 Aligned_cols=109 Identities=18% Similarity=0.129 Sum_probs=75.7
Q ss_pred cCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHH-HHH
Q 000292 752 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKR-ALY 830 (1713)
Q Consensus 752 ~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yer-ALe 830 (1713)
+++.++....++. ++..+...++...|.-..+.++.. ++..+.++.+||......|....++.-+.+ +..
T Consensus 60 ~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~ 130 (620)
T COG3914 60 INDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEW 130 (620)
T ss_pred cCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4567787766666 888888899988888777777664 567788899999888887776666554443 433
Q ss_pred HHHHhcCCCChh---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 831 LLHLTCGPSHPN---TAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 831 L~~~i~G~dhP~---~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
+. ++... ....++.++..+..+|+..++...++++.++.
T Consensus 131 ~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 131 LS-----PDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred cC-----cchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 21 11111 11123337888888999999998888888876
No 428
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=47.35 E-value=2.6e+02 Score=35.25 Aligned_cols=109 Identities=17% Similarity=0.034 Sum_probs=64.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH--HHcCChHHHHHHHHHHH-------------
Q 000292 765 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY--YRLQHTELALKYVKRAL------------- 829 (1713)
Q Consensus 765 ~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy--~~lG~~eeALe~yerAL------------- 829 (1713)
..+..++..++|..|...+.+++.. .+..+.......|..|+.+| +..-++++|.+++++.+
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r---~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~ 211 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRR---LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHD 211 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc---ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhh
Confidence 3566788899999999999988753 22222233455666666655 45567799999998211
Q ss_pred ------HHHHHhcC------------CCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000292 830 ------YLLHLTCG------------PSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 876 (1713)
Q Consensus 830 ------eL~~~i~G------------~dhP~--~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek 876 (1713)
.....+.+ ..++. +..-+..-|.--...|+|+.|+..+-+++++..+
T Consensus 212 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q 278 (380)
T TIGR02710 212 ELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQ 278 (380)
T ss_pred HHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 00000100 01121 1111222233444789999999998888887643
No 429
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=47.11 E-value=7.3e+02 Score=33.38 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=14.0
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 000292 726 KTALDKGKLEDAVTYGTK 743 (1713)
Q Consensus 726 ~~~l~qG~~eeAle~lqe 743 (1713)
.+++-.|+|+.|++++.+
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 566778999999999877
No 430
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=46.62 E-value=3.3e+02 Score=33.77 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=67.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 000292 729 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 808 (1713)
Q Consensus 729 l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nL 808 (1713)
.+.++.++|++++++..+.....- ....+..+...+|+++...||..++.+.....-.+.....+.. +..-..|+.+
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~--e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~-~~Vh~~fY~l 162 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYK--EPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVT-SNVHSSFYSL 162 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCC-hhhhhhHHHH
Confidence 345689999999999988765541 2225667788899999999999999999888887776655443 3233344444
Q ss_pred -HHHHHHcCChHHHHHHHHHHHHH
Q 000292 809 -AVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 809 -A~vy~~lG~~eeALe~yerALeL 831 (1713)
+.+|...|++.. ||+.||..
T Consensus 163 ssqYyk~~~d~a~---yYr~~L~Y 183 (380)
T KOG2908|consen 163 SSQYYKKIGDFAS---YYRHALLY 183 (380)
T ss_pred HHHHHHHHHhHHH---HHHHHHHH
Confidence 455666677764 55666554
No 431
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=46.29 E-value=2.6e+02 Score=36.00 Aligned_cols=82 Identities=23% Similarity=0.204 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000292 760 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 839 (1713)
Q Consensus 760 A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~d 839 (1713)
...|..||.+...+|+++-|..+|+++-. +..|..+|...|+.+.=.++...|.. . |
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~~~L~lLy~~~g~~~~L~kl~~~a~~----~-~-- 403 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAKD----------------FSGLLLLYSSTGDREKLSKLAKIAEE----R-G-- 403 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------HHHHHHHHHHCT-HHHHHHHHHHHHH----T-T--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------ccccHHHHHHhCCHHHHHHHHHHHHH----c-c--
Confidence 45899999999999999999999988743 34577788888887544444433332 1 1
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000292 840 HPNTAATYINVAMMEEGLGNVHVALRYLHKA 870 (1713)
Q Consensus 840 hP~~a~a~~NLA~iy~~lG~~eeAle~lekA 870 (1713)
.... .-.++..+|+.++.++.+.++
T Consensus 404 ~~n~------af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 DINI------AFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHH------HHHHHHHHT-HHHHHHHHHHT
T ss_pred CHHH------HHHHHHHcCCHHHHHHHHHHc
Confidence 1111 122344557777666666554
No 432
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=46.22 E-value=87 Score=37.15 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=18.9
Q ss_pred cCCCCCCCCcccCCCCcccccCCC
Q 000292 1425 TLPPGPGAVTAVAPWPVNMTLHPR 1448 (1713)
Q Consensus 1425 ~~~~~~~~~~~~~~~p~n~~~~~~ 1448 (1713)
+-| |+..+||+.|+| +|++|||
T Consensus 203 ~RP-G~~~~PgmtprP-G~~~~Pg 224 (279)
T PF07271_consen 203 QRP-GFTPHPGMTPRP-GMTPHPG 224 (279)
T ss_pred CCC-CCCCCCCCCCCC-CCCCCCC
Confidence 344 899999999999 8999988
No 433
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=46.07 E-value=6.8e+02 Score=31.13 Aligned_cols=37 Identities=24% Similarity=0.154 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000292 884 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 920 (1713)
Q Consensus 884 ~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~L 920 (1713)
..+.+++.+|......+++.+|+.+++.|...++...
T Consensus 251 ~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~ 287 (346)
T cd09247 251 HEARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKL 287 (346)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 3566778888888899999999999999998766543
No 434
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.89 E-value=8.9e+02 Score=31.84 Aligned_cols=33 Identities=15% Similarity=-0.027 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhc
Q 000292 970 LLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1002 (1713)
Q Consensus 970 lL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~ 1002 (1713)
.+.+|+..|..+++|.+|++.|.++........
T Consensus 424 RC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~ 456 (593)
T KOG2460|consen 424 RCFYIAVSYQAKKKYSEALALYVRAYSYLQEVN 456 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999987765544
No 435
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=43.59 E-value=3e+02 Score=34.39 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHH
Q 000292 760 AGAYSLLAVVLYHTG---------DFNQATIYQQKALDINE 791 (1713)
Q Consensus 760 A~ay~~LA~vy~~lG---------d~deAle~~~KAL~I~E 791 (1713)
+.+++|+|.+|...| ...+|..+|++|--+++
T Consensus 106 asVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~ 146 (350)
T cd09244 106 ASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFN 146 (350)
T ss_pred HHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 445555555554433 25667777777755543
No 436
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=43.08 E-value=48 Score=39.95 Aligned_cols=59 Identities=17% Similarity=0.102 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 765 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 831 (1713)
Q Consensus 765 ~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL 831 (1713)
+.|.-.+..|+.++|..+|..|+.+ .|....++..+|.+....++.-+|-.||-+||.+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 3444456789999999999999987 3455667888999999999999999999999976
No 437
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=42.91 E-value=5e+02 Score=32.35 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 885 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 885 tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
.+.+++..|..+...+++.+|+.+++.|...++.
T Consensus 243 ~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 276 (348)
T cd09242 243 KSLAAYYHALALEAAGKYGEAIAYLTQAESILKE 276 (348)
T ss_pred HHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHH
Confidence 4455666677777778888888888887765543
No 438
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.61 E-value=3.1e+02 Score=33.21 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=35.5
Q ss_pred HHHHHHHHCCCHHHHH-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000292 849 NVAMMEEGLGNVHVAL-RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 910 (1713)
Q Consensus 849 NLA~iy~~lG~~eeAl-e~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~le 910 (1713)
|++.+....+.-+..+ .+.++|++-..+ +|.........+..||..+..-++..+|..||-
T Consensus 90 nl~~ll~e~~~~eper~~~v~raikWS~~-~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFl 151 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIKWSKE-FGEGKYGHPELHALLADKLWTEDNVEEARRHFL 151 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhh
Confidence 4444444444433333 445555655533 333323344567778888888888888888874
No 439
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.43 E-value=7.8e+02 Score=30.75 Aligned_cols=28 Identities=7% Similarity=-0.123 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000292 806 GDLAVFYYRLQHTELALKYVKRALYLLH 833 (1713)
Q Consensus 806 ~nLA~vy~~lG~~eeALe~yerALeL~~ 833 (1713)
.+-|.+++..++|.++...+..|-.-++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~K 89 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFK 89 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHh
Confidence 3458888888888888877766655444
No 440
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=42.41 E-value=9.8e+02 Score=31.89 Aligned_cols=129 Identities=14% Similarity=-0.031 Sum_probs=89.4
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 756 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 835 (1713)
Q Consensus 756 hp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i 835 (1713)
.......|......-...|+++....+|++++.-+.. .-..+...+......|+.+-|-..+.++.++..
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~--------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-- 362 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL--------YDEFWIKYARWMESSGDVSLANNVLARACKIHV-- 362 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh--------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC--
Confidence 3344455666666677789999999999998876432 235566777777777999999888888887642
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q 000292 836 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 907 (1713)
Q Consensus 836 ~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle 907 (1713)
+....+...-|.+....|++..|...|++...-+ +....+-..-+.....+|+.+.+..
T Consensus 363 -----k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 363 -----KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred -----CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchhhhhH
Confidence 3334445556777888999999999998877543 2233333334556667788887775
No 441
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=41.63 E-value=6.6e+02 Score=31.52 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000292 884 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 917 (1713)
Q Consensus 884 ~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~k 917 (1713)
..+.+++..|..+...+++.+|+..++.|...++
T Consensus 246 f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k 279 (353)
T cd09243 246 YLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYN 279 (353)
T ss_pred HHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777777777765543
No 442
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=40.91 E-value=29 Score=40.36 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=49.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 851 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 851 A~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
+.+....++.+.|.+.|.+|+++. +..+..++.+|......|+++.|.+.|++.+++
T Consensus 2 a~~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 345667889999999999999886 567788999999999999999999999998865
No 443
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=40.54 E-value=2e+02 Score=28.08 Aligned_cols=34 Identities=24% Similarity=0.160 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 802 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 835 (1713)
Q Consensus 802 a~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i 835 (1713)
+..|...|.-+-..|++.+|+.+|+.|++++.+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4556677777888999999999999999988775
No 444
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=40.43 E-value=1.2e+02 Score=37.01 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccccccCCC
Q 000292 1454 PTVNPMCSSPHQPYPSPPSTPNMMQPLPFMYPP 1486 (1713)
Q Consensus 1454 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 1486 (1713)
|.-.||-.|||-+-|+|-..|.-.|==||.+||
T Consensus 290 ppRP~m~l~phl~gppPga~pPaph~NpaffpP 322 (498)
T KOG4849|consen 290 PPRPMMQLSPHLMGPPPGAGPPAPHNNPAFFPP 322 (498)
T ss_pred CCCcccccCcccCCCCCCCCCCCcccCcccCCC
Confidence 555667778887776655544444444566666
No 445
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=40.42 E-value=8.3e+02 Score=30.49 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 884 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 884 ~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
..+.+++..|......+++.+|+.+++.|...+++
T Consensus 235 f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~ 269 (355)
T cd09241 235 FKAAAHYRMALVALEKSKYGEEVARLRVALAACKE 269 (355)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35666777788878888888999999888876544
No 446
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=39.65 E-value=1.8e+02 Score=35.38 Aligned_cols=71 Identities=21% Similarity=0.226 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000292 804 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 882 (1713)
Q Consensus 804 ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~ 882 (1713)
.++-.+..|...|.+.+|.++.++++.+ ||..-..+..|-.+|..+|+--.|+..|++--+..++-+|-+-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 3455678889999999999999999985 5666677777888899999999999999988777777777543
No 447
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=39.61 E-value=3.3e+02 Score=30.57 Aligned_cols=103 Identities=15% Similarity=0.014 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000292 722 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 801 (1713)
Q Consensus 722 lelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~t 801 (1713)
+++-..-+..|.|.+|.+++.+.++.- ...+...+|..+++|.....+-.--+.-..+.+...--...+..|..
T Consensus 97 leqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFW 170 (220)
T PF10858_consen 97 LEQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFW 170 (220)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchH
Confidence 344455567899999999999998862 23566778888888888776543333333333333222223445556
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000292 802 MKSYGDLAVFYYRLQHTELALKYVKRALY 830 (1713)
Q Consensus 802 a~ay~nLA~vy~~lG~~eeALe~yerALe 830 (1713)
+.+-..-|..-...|.-.+|+++++..+.
T Consensus 171 atAtI~kaiwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 171 ATATIIKAIWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 65555566677788889999998887765
No 448
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.55 E-value=7.3e+02 Score=29.61 Aligned_cols=157 Identities=13% Similarity=0.041 Sum_probs=80.7
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 000292 730 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 809 (1713)
Q Consensus 730 ~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA 809 (1713)
.+++|++|++++.+.... +...|++.-|.++..-.+++++... .+.......+|.
T Consensus 2 ~~kky~eAidLL~~Ga~~----------------------ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl~ 56 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALI----------------------LLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARLI 56 (260)
T ss_dssp HTT-HHHHHHHHHHHHHH----------------------HHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHH----------------------HHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHH
Confidence 456777777776665443 3344445555555544555554421 112223345666
Q ss_pred HHHHHcCChH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHH---HH--Hhc
Q 000292 810 VFYYRLQHTE-LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA-----LKC---NQ--RLL 878 (1713)
Q Consensus 810 ~vy~~lG~~e-eALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekA-----Lei---~e--k~~ 878 (1713)
.++.....-+ +-.++..+|+... +. +...-.....+..+|.+|.+.|++.+|..+|-.+ ... .. ...
T Consensus 57 ~l~~~~~~~~p~r~~fi~~ai~WS-~~-~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~ 134 (260)
T PF04190_consen 57 ELISLFPPEEPERKKFIKAAIKWS-KF-GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK 134 (260)
T ss_dssp HHHHHS-TT-TTHHHHHHHHHHHH-HT-SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcchHHHHHHHHHHHH-cc-CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 6666665433 3445667777765 32 3222223456788999999999999999888321 111 00 111
Q ss_pred CCCcHHHHHHH-HHHHHHHHHcCChHHHHHHHHHHHHH
Q 000292 879 GPDHIQTAASY-HAIAIALSLMEAYPLSVQHEQTTLQI 915 (1713)
Q Consensus 879 G~d~~~tA~a~-~nLA~ay~~lGd~eeAle~lekALeI 915 (1713)
|..+ ....+ .+.-.-|...++...|...+..-.+.
T Consensus 135 ~~~~--e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 135 GYPS--EADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp TSS----HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cCCc--chhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2221 11222 22233566789999888877655544
No 449
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.88 E-value=2.4e+02 Score=37.15 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=51.2
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH---
Q 000292 813 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY--- 889 (1713)
Q Consensus 813 ~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~--- 889 (1713)
.+.|+++.|.++..++-. ..-|..||.+....+++..|.++|.+|..+..-++-......+..+
T Consensus 648 l~lgrl~iA~~la~e~~s-------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEANS-------------EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhcCcHHHHHHHHHhhcc-------------hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHH
Confidence 356677776665544422 2235678999999999999999999997654222111111111112
Q ss_pred ---------HHHH-HHHHHcCChHHHHHHHHHH
Q 000292 890 ---------HAIA-IALSLMEAYPLSVQHEQTT 912 (1713)
Q Consensus 890 ---------~nLA-~ay~~lGd~eeAle~lekA 912 (1713)
+|+| .+|...|+++++++.+.+.
T Consensus 715 a~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 715 ASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 2333 2456677777777766554
No 450
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=38.86 E-value=1.4e+02 Score=32.94 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000292 801 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 880 (1713)
Q Consensus 801 ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~ 880 (1713)
....+..+..+-....+++++..++....-+ .|.......--|+++...|+|.+|+..|++..+-.
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~------ 74 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA------ 74 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC------
Confidence 3445555555556688888887666544332 35555556668999999999999999998765432
Q ss_pred CcHHHHHHHHHHHHHHHHcCChH
Q 000292 881 DHIQTAASYHAIAIALSLMEAYP 903 (1713)
Q Consensus 881 d~~~tA~a~~nLA~ay~~lGd~e 903 (1713)
.+ ...+.-.++.++..+||.+
T Consensus 75 ~~--~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 75 GA--PPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CC--chHHHHHHHHHHHhcCChH
Confidence 12 2233344688888888764
No 451
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=38.60 E-value=87 Score=36.77 Aligned_cols=49 Identities=8% Similarity=-0.143 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHH---------HHCCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhhcc
Q 000292 967 VSDLLDYINPSH---------DTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRE 1020 (1713)
Q Consensus 967 vaelL~~LA~~y---------~~qGdyeEAl~yyeKALeL~dSl~q~n~ea~~eIa~LEikye 1020 (1713)
.+.+|..+|..+ ...++..+|+.++++|+++.++++ ..+.|..++...+
T Consensus 168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G-----VK~~i~~l~~~lr 225 (230)
T PHA02537 168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG-----VKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC-----hHHHHHHHHHHHh
Confidence 455788888877 345688899999999999999887 3345555554443
No 452
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.79 E-value=2.5e+02 Score=38.52 Aligned_cols=36 Identities=39% Similarity=0.548 Sum_probs=18.4
Q ss_pred CCCCccccCCCCCCCCCC-CCCCCCCCCCC-CCCcccc
Q 000292 1446 HPRPATVLPTVNPMCSSP-HQPYPSPPSTP-NMMQPLP 1481 (1713)
Q Consensus 1446 ~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~-~~~~~~~ 1481 (1713)
-+||+.++|...+|.+-| |-+.++|-..| -+|+++|
T Consensus 164 p~~p~~~~p~~p~~~s~p~~~~~~~~a~pp~a~~~~p~ 201 (1007)
T KOG1984|consen 164 PPGPAMVPPSGPLMVSQPARASGMPPAFPPGAQMQPPP 201 (1007)
T ss_pred CCCCccCCCCCCcCCCCCCcCCCCCCCCCCccCCCCCC
Confidence 456777777777775555 32333322222 3455555
No 453
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=37.49 E-value=6.6e+02 Score=31.24 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000292 844 AATYINVAMMEEGLGNVHVALRYLHKALKCNQR 876 (1713)
Q Consensus 844 a~a~~NLA~iy~~lG~~eeAle~lekALei~ek 876 (1713)
+.+++.+|......+++-+|+.+++.|....+.
T Consensus 253 A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 285 (346)
T cd09247 253 ARSQLYLARRLKEAGHIGVAVGVLREALRNLKK 285 (346)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 556677777777888888888888888876543
No 454
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=37.26 E-value=1.8e+02 Score=28.49 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVA 750 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eq 750 (1713)
.|..+...|..+-..|+|++|+.+|++|++.+..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4667777888888999999999999999998866
No 455
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=37.21 E-value=9.8e+02 Score=31.67 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=54.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC---C-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000292 847 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLG---P-DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 918 (1713)
Q Consensus 847 ~~NLA~iy~~lG~~eeAle~lekALei~ek~~G---~-d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk 918 (1713)
.++++.-+...|.-.++++++.-+....+.... . .-+..+..|..+..+|...|.+.+|..+.++|+.-...
T Consensus 154 IY~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki~e 229 (542)
T PF14858_consen 154 IYTICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKIDE 229 (542)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 456888888999999999999877665543221 1 12345677888999999999999999999998865443
No 456
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=36.70 E-value=85 Score=39.05 Aligned_cols=8 Identities=13% Similarity=-0.002 Sum_probs=6.1
Q ss_pred CCCCCCcc
Q 000292 1527 PFLPGYHP 1534 (1713)
Q Consensus 1527 ~~~~~~~~ 1534 (1713)
+.||+-|.
T Consensus 450 q~~pa~~a 457 (462)
T KOG2199|consen 450 QQPPAPTA 457 (462)
T ss_pred CCCCCCCC
Confidence 77888775
No 457
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=36.40 E-value=2.3e+03 Score=34.61 Aligned_cols=37 Identities=5% Similarity=0.027 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhc
Q 000292 966 SVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1002 (1713)
Q Consensus 966 svaelL~~LA~~y~~qGdyeEAl~yyeKALeL~dSl~ 1002 (1713)
..++.+..-|....+.|++++|-..|..|+++.+-+.
T Consensus 2810 q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~ 2846 (3550)
T KOG0889|consen 2810 QKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLG 2846 (3550)
T ss_pred HHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhH
Confidence 4677888889999999999999999999999876654
No 458
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=36.30 E-value=69 Score=27.99 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 000292 722 LESSKTALDKGKLEDAVTYGTKALA 746 (1713)
Q Consensus 722 lelA~~~l~qG~~eeAle~lqeAL~ 746 (1713)
+.+|+.|+..|+++.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678999999999999999999885
No 459
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.00 E-value=2.8e+02 Score=29.42 Aligned_cols=86 Identities=12% Similarity=0.015 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 000292 816 QHTELALKYVKRALYLLHLT-CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAI 894 (1713)
Q Consensus 816 G~~eeALe~yerALeL~~~i-~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ 894 (1713)
+.-..-..++++++..+... .-.+++....++...|.... .+.+.|+..... -.|. ..+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~---~IG~---~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK---GIGT---KLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH---TTST---TBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc---CccH---HHHHHHHHHHH
Confidence 44555667888888876442 11335566666655554322 677777655432 2343 34566777899
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 000292 895 ALSLMEAYPLSVQHEQTTL 913 (1713)
Q Consensus 895 ay~~lGd~eeAle~lekAL 913 (1713)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998764
No 460
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=35.57 E-value=2.8e+02 Score=37.46 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhhccc
Q 000292 584 SLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLGVH 627 (1713)
Q Consensus 584 ~l~~~EMIaRA~KhILRa~lr~l~~~~~la~AIahfLNcLLG~~ 627 (1713)
.|.++.=|+|+.+|-++..--. -...+...++++++-|+-+.
T Consensus 62 gLYVIDSIVRqsrhq~~~~kd~--F~prf~~n~~~tf~~L~~c~ 103 (894)
T KOG0132|consen 62 GLYVIDSIVRQSRHQFGKEKDV--FGPRFSKNFTGTFQNLYECP 103 (894)
T ss_pred eeEEehHHHHHHHHhhcccccc--cCCccchhHHHHHHHHHhcC
Confidence 3566677789998888843211 23455566677777666443
No 461
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=35.57 E-value=68 Score=39.56 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC------CC-----ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 806 GDLAVFYYRLQHTELALKYVKRALYLLHLTCG------PS-----HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 806 ~nLA~vy~~lG~~eeALe~yerALeL~~~i~G------~d-----hP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
-+.+.-.+..++|+.|..-|.+++......-. .+ ......++.|++.+-...+.+..|+.....+++
T Consensus 226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~-- 303 (372)
T KOG0546|consen 226 KNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR-- 303 (372)
T ss_pred hccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc--
Confidence 34566678888999999988888876653100 01 112245677888888899999988887776665
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000292 875 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 935 (1713)
Q Consensus 875 ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG~dh~~t~ea~~~La 935 (1713)
......-+++..++.|..+.++++|++.++.|.+. .+++......+....
T Consensus 304 ------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~-----~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 304 ------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK-----APNDKAIEEELENVR 353 (372)
T ss_pred ------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc-----CcchHHHHHHHHHhh
Confidence 23445677889999999999999999999988743 455555544444433
No 462
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=35.50 E-value=6.9e+02 Score=28.16 Aligned_cols=102 Identities=13% Similarity=0.128 Sum_probs=67.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000292 766 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 845 (1713)
Q Consensus 766 LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~ 845 (1713)
+-..-..-|.|.+|-.++.+.++.- ...+...+|..+++|.....+-..-..--.+..+.+--...+.-|..+.
T Consensus 99 qva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWat 172 (220)
T PF10858_consen 99 QVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWAT 172 (220)
T ss_pred HHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHH
Confidence 3344556788999999999998863 3456788999999999877553322222223333222223455666665
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000292 846 TYINVAMMEEGLGNVHVALRYLHKALKC 873 (1713)
Q Consensus 846 a~~NLA~iy~~lG~~eeAle~lekALei 873 (1713)
+-...|..-...|.-.+|+++++..+..
T Consensus 173 AtI~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 173 ATIIKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 5555666667888889999998877654
No 463
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=35.18 E-value=4.1e+02 Score=32.66 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q 000292 733 KLEDAVTYGTKALAKLVAV 751 (1713)
Q Consensus 733 ~~eeAle~lqeAL~l~eqv 751 (1713)
.+..|..+|++|...++.+
T Consensus 136 ~~k~A~~~fq~AAG~F~~l 154 (345)
T cd09034 136 DLKQAIKSLQKAAGYFEYL 154 (345)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677888888888766543
No 464
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=34.40 E-value=9.8e+02 Score=30.69 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000292 885 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 917 (1713)
Q Consensus 885 tA~a~~nLA~ay~~lGd~eeAle~lekALeI~k 917 (1713)
.+.+++.+|......+++-+|+.+++.|...+.
T Consensus 295 ~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~ 327 (413)
T cd09245 295 RALACKFLGIDAGENGKVGEAIGWLRAAKKELE 327 (413)
T ss_pred HHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHH
Confidence 456677778878888888899988888887543
No 465
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=34.16 E-value=91 Score=30.41 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 752 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~ 752 (1713)
..|..+...|..+-..|++.+|+.+|+++++++.++.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3567788888999999999999999999999887764
No 466
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=33.71 E-value=2e+02 Score=28.07 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 752 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~ 752 (1713)
..+..+...|..+-..|+|++|+.+|.+++..+...+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888999999999999999999987754
No 467
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=31.98 E-value=95 Score=41.55 Aligned_cols=7 Identities=43% Similarity=0.686 Sum_probs=3.0
Q ss_pred cCCCCCC
Q 000292 1453 LPTVNPM 1459 (1713)
Q Consensus 1453 ~~~~~~~ 1459 (1713)
+|+-||+
T Consensus 626 ~Pg~np~ 632 (894)
T KOG0132|consen 626 RPGYNPY 632 (894)
T ss_pred CCCCCCC
Confidence 4444444
No 468
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=31.88 E-value=3.2e+02 Score=34.01 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 885 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 919 (1713)
Q Consensus 885 tA~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~ 919 (1713)
.+.+++..|..+...+++.+|+.+++.|...++..
T Consensus 238 ~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a 272 (377)
T PF03097_consen 238 RALAHYHQALAAEEAKKYGEAIARLRRAEEALKEA 272 (377)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 45566677777778888888888888877766543
No 469
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=31.79 E-value=68 Score=37.52 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=49.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000292 726 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 789 (1713)
Q Consensus 726 ~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I 789 (1713)
......|+.+.|.++|.+||.+ .|+.+..|+.+|......|+++.|...|++.+++
T Consensus 3 ~~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3445789999999999999987 4778889999999999999999999999999886
No 470
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=31.59 E-value=1.1e+02 Score=39.05 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=47.7
Q ss_pred CCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCcccccCCC
Q 000292 1461 SSPHQPYPSPPSTPNMMQPLPFMYPPYTQPQGVPTSTFPVTTSAFHHNHFSWQCNGNSNVPEFIPGPFLPGYHPMEFSVP 1540 (1713)
Q Consensus 1461 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~~~~~~~~ 1540 (1713)
+-|||..||+|.||.-.+-..- | =--++.++|+-.-.+. .|- -|++.=|-.||++=|-.
T Consensus 420 ~~~~~~~ps~p~tPSs~~ads~-------------n-~a~~s~a~h~l~~kp~----~h~---tP~~~~q~~~p~~ppk~ 478 (661)
T KOG2070|consen 420 SVPSHTLPSHPVTPSSKHADSK-------------N-PAPLSPAYHTLPHKPS----HHG---TPHTTIQNWGPLEPPKT 478 (661)
T ss_pred cccccCCCCCCCCcccccccCC-------------C-CCCCCcccCcCCCCCC----CCC---CCCCCccccCCCCCCCC
Confidence 4489999999998865432210 0 0113455663321111 111 58888888999985444
Q ss_pred CCccccCCCcccccccccCCC
Q 000292 1541 PPVVEPILDPIMQPKAQSGDL 1561 (1713)
Q Consensus 1541 ~~~~~~~~~~~~~~~~~~~~~ 1561 (1713)
.-|-+++.+-|..-|...
T Consensus 479 ---~kp~s~S~~~pNmKfa~p 496 (661)
T KOG2070|consen 479 ---PKPWSLSCLRPNMKFAPP 496 (661)
T ss_pred ---CCCcchhhcCCCcccCCC
Confidence 489999999997766553
No 471
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.35 E-value=4.1e+02 Score=37.05 Aligned_cols=48 Identities=21% Similarity=-0.022 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSL 765 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~ 765 (1713)
.+++..-..|..++-.|.+..|++.|..|+++++.. .|+-..+.+|-.
T Consensus 243 sLGR~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t--~DyLWlg~AldG 290 (1235)
T KOG1953|consen 243 SLGRIEKQFGDYYLLAGRPVDALKHFSTAIELLKAT--GDYLWLGLALDG 290 (1235)
T ss_pred hHHHHHHhhcceeeecCCchHHHHHHHHHHHHHHhh--hhheeehhhccc
Confidence 346677777888889999999999999999998776 345555555443
No 472
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=31.21 E-value=1.8e+02 Score=27.17 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 752 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~ 752 (1713)
..|..+...|..+-..|++++|+.+|.+++..+...+
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 39 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQAL 39 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 3466778888999999999999999999999876553
No 473
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=30.86 E-value=3.8e+02 Score=25.54 Aligned_cols=31 Identities=23% Similarity=-0.005 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000292 806 GDLAVFYYRLQHTELALKYVKRALYLLHLTC 836 (1713)
Q Consensus 806 ~nLA~vy~~lG~~eeALe~yerALeL~~~i~ 836 (1713)
...|.-+-..|++++|+.+|.+|++.+....
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 3344555568999999999999999887754
No 474
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=29.96 E-value=74 Score=27.81 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=23.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Q 000292 848 INVAMMEEGLGNVHVALRYLHKALK 872 (1713)
Q Consensus 848 ~NLA~iy~~lG~~eeAle~lekALe 872 (1713)
.+||.+|...|+++.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5799999999999999999999884
No 475
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=29.94 E-value=4.5e+02 Score=25.74 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 888 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 919 (1713)
Q Consensus 888 a~~nLA~ay~~lGd~eeAle~lekALeI~kk~ 919 (1713)
.+...|.-+-..|+|++|+.+|++|++.+...
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 34445666667899999999999999999873
No 476
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=29.94 E-value=1.7e+02 Score=37.87 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000292 776 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ---HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 852 (1713)
Q Consensus 776 ~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~vy~~lG---~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~ 852 (1713)
...|+..|.++++. .+..+..|.|-|.++...+ +.-.|+.-...|+.+ .|....+++.|+.
T Consensus 390 ~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~~la~ 453 (758)
T KOG1310|consen 390 VSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHHHHHH
Confidence 45667777777664 3455666777777776553 334455545555543 5777889999999
Q ss_pred HHHHCCCHHHHHHHHHH
Q 000292 853 MEEGLGNVHVALRYLHK 869 (1713)
Q Consensus 853 iy~~lG~~eeAle~lek 869 (1713)
++..++++.+|+.+...
T Consensus 454 aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHhhHHHhhhhHHH
Confidence 99999999999987653
No 477
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=29.86 E-value=2.7e+02 Score=26.75 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 752 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~ 752 (1713)
.+..++..|...-..|++++|+.+|.+|+..+....
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~ 40 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHAL 40 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 466777888888899999999999999999887654
No 478
>PRK14707 hypothetical protein; Provisional
Probab=29.67 E-value=4e+02 Score=40.22 Aligned_cols=152 Identities=14% Similarity=-0.007 Sum_probs=87.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 000292 764 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM--KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 841 (1713)
Q Consensus 764 ~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta--~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP 841 (1713)
..++.++..+.++.+.-.+-.-+..+..++. +++... ..--.+|.++..+.+|.+.-.+-..++.+...+....++
T Consensus 1045 Q~lan~LNALSKWPde~~Cr~Aa~aLA~rL~--~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l 1122 (2710)
T PRK14707 1045 QGLTTVLNALCKWPEMPVCLAAASALAERLS--DDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGL 1122 (2710)
T ss_pred HHHHHHHHhhccCCCchhHHHHHHHHHHHhh--ccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccch
Confidence 3466666667777766555555556655543 223322 233467888888888988888888888888877555555
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000292 842 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 917 (1713)
Q Consensus 842 ~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA~a~~nLA~ay~~lGd~eeAle~lekALeI~k 917 (1713)
........++.++..+.+|...-.+=.-+..+..++........+..-..+|..+..+.++-+.-.+.+-++.+..
T Consensus 1123 ~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~ 1198 (2710)
T PRK14707 1123 RHVFDPINVSQALNALSKWPGTQACESAIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAE 1198 (2710)
T ss_pred hccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Confidence 5554555666666666666554444444455554443333333333334455555555555444444443444443
No 479
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.22 E-value=1.7e+02 Score=38.61 Aligned_cols=14 Identities=21% Similarity=0.086 Sum_probs=10.3
Q ss_pred ccccCCCCCCCchh
Q 000292 1401 LSASAVPFNPSPAV 1414 (1713)
Q Consensus 1401 lsa~a~pfnps~~~ 1414 (1713)
++--+|||=||-.+
T Consensus 469 ~~~~~pP~Vpsg~~ 482 (861)
T KOG3161|consen 469 QPYGPPPPVPSGMY 482 (861)
T ss_pred CcCCCCCCCCcccc
Confidence 67778888887664
No 480
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=28.86 E-value=3.2e+02 Score=25.55 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000292 888 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 921 (1713)
Q Consensus 888 a~~nLA~ay~~lGd~eeAle~lekALeI~kk~LG 921 (1713)
.+...|.-+-..|++++|+.+|.+|+..+...+.
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~ 40 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYLMQALK 40 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3444566667789999999999999998877554
No 481
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=28.85 E-value=7.6e+02 Score=30.14 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=79.6
Q ss_pred HHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHH
Q 000292 718 GRQLLES-SKTALDKGKLEDAVTYGTKALAKLVAVCGPY-----HRMTAGAYSLLA-VVLYHTGDFNQATIYQQKALDIN 790 (1713)
Q Consensus 718 A~~Llel-A~~~l~qG~~eeAle~lqeAL~l~eqv~G~d-----hp~~A~ay~~LA-~vy~~lGd~deAle~~~KAL~I~ 790 (1713)
+..+++. |..++-.-+|..|++.++++++.+....+.. ..+.-.++.-+| .++..++++.+++.+..+-...-
T Consensus 34 a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~p 113 (309)
T PF07163_consen 34 AVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVP 113 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCc
Confidence 3344444 4455666799999999999999873321111 112333444444 46778899998887765554433
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHHHCCCHHHHHHHHH
Q 000292 791 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA-ATYINVAMMEEGLGNVHVALRYLH 868 (1713)
Q Consensus 791 Er~lG~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a-~a~~NLA~iy~~lG~~eeAle~le 868 (1713)
|+. .+..+ -.--..|.+.+++...++.-..-|..- .+..-|+.. -+-..|-.++.-+|.+++|.++..
T Consensus 114 Ekl----PpkIl---eLCILLysKv~Ep~amlev~~~WL~~p---~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 114 EKL----PPKIL---ELCILLYSKVQEPAAMLEVASAWLQDP---SNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred ccC----CHHHH---HHHHHHHHHhcCHHHHHHHHHHHHhCc---ccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 321 22222 222345778888887776655444321 111222211 111225566667899999998874
No 482
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.76 E-value=1.4e+03 Score=32.18 Aligned_cols=238 Identities=16% Similarity=0.103 Sum_probs=0.0
Q ss_pred ccchhhccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------HHHHhcCCCChhHHHHHHHH-
Q 000292 705 VPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALA-----------------KLVAVCGPYHRMTAGAYSLL- 766 (1713)
Q Consensus 705 ~PvvK~~~~~s~~A~~LlelA~~~l~qG~~eeAle~lqeAL~-----------------l~eqv~G~dhp~~A~ay~~L- 766 (1713)
...+..+.........+..++..|...|+.++|++++.+... .+-+-++..+......|...
T Consensus 491 ~c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wv 570 (877)
T KOG2063|consen 491 HCDVEEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWV 570 (877)
T ss_pred CcchHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhh
Q ss_pred ---------------------------HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH-HHHHcCCh
Q 000292 767 ---------------------------AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV-FYYRLQHT 818 (1713)
Q Consensus 767 ---------------------------A~vy~~lGd~deAle~~~KAL~I~Er~lG~Dhp~ta~ay~nLA~-vy~~lG~~ 818 (1713)
-.-|......+-++.|+++++...+.....-|...+..|..... .-...++-
T Consensus 571 l~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg 650 (877)
T KOG2063|consen 571 LNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKG 650 (877)
T ss_pred hccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhcc
Q ss_pred HHHHHH-HHHHHHHHHHhcCCCChhH-------HHHHHHHHHHHHHCCCHHHHHHHH-------HHHHHHHHHhcCCCcH
Q 000292 819 ELALKY-VKRALYLLHLTCGPSHPNT-------AATYINVAMMEEGLGNVHVALRYL-------HKALKCNQRLLGPDHI 883 (1713)
Q Consensus 819 eeALe~-yerALeL~~~i~G~dhP~~-------a~a~~NLA~iy~~lG~~eeAle~l-------ekALei~ek~~G~d~~ 883 (1713)
++|.+. +++=+..+......-+|.. ...|...|.++.++|+.++|+..| ..|..++...++.+..
T Consensus 651 ~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~ 730 (877)
T KOG2063|consen 651 EEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKT 730 (877)
T ss_pred ccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCc
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHH----------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 000292 884 QTAASYHAIAIALSLMEAYPLSVQHEQT----------TLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ 944 (1713)
Q Consensus 884 ~tA~a~~nLA~ay~~lGd~eeAle~lek----------ALeI~kk~LG~dh~~t~ea~~~La~L~qka~e~ 944 (1713)
..-..+..|..++.-..++.....+... ..++++.. +++.........+..+.++..+.
T Consensus 731 ~~~~y~~lL~~~l~~~~d~~~~~~~il~~l~~h~~r~d~~~~~~~L--p~~~sl~~~~~~l~~~Lr~~~~~ 799 (877)
T KOG2063|consen 731 NKEIYLTLLRIYLNPIHDYKSGPLYILNFLQKHADRLDLAQVLKLL--PDDISLKDLCSFLSKLLRKRFEA 799 (877)
T ss_pred ccHHHHHHHHHHhcchhhccccchhhhhHHHhhhhhcCHHHHHHhC--CccCcHhHHHHHHHHHHHHHHHh
No 483
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=28.58 E-value=2.2e+02 Score=35.66 Aligned_cols=125 Identities=20% Similarity=0.222 Sum_probs=0.0
Q ss_pred CCCCCCCCccccccCCCcccccccCcCcchhccccccCCCCcCCCCCCCC-CCCccccccCCCCCCCchhhccccceeec
Q 000292 1346 PNSIDSPTSEFYEKDSSESIESHDNTKSTLQVVDDLKEKPSVFNPGDTRG-LPNRKLSASAVPFNPSPAVARASAVAINM 1424 (1713)
Q Consensus 1346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~klsa~a~pfnps~~~~~~~~~~~~~ 1424 (1713)
+|..+++.--+.-.++-.+-+--+..+.....+.|+++....--..-+.- .++--+-|+|.|=|+-++ -.+|..|=
T Consensus 265 e~~~~v~~~~~~~~~d~~dds~~eden~~~~~~sn~sk~a~P~~~aP~~~~~ps~~~~a~~~p~~~q~p--~~Pp~~~l- 341 (487)
T KOG4672|consen 265 ENITSVPLLPPPGIPDNEDDSRPEDENASSFQNSNLSKTAIPEPDAPLQPIHPSTFAGAAASPTNFQPP--YGPPPGML- 341 (487)
T ss_pred cccccccccCCCCCCccccccchhhhccccccccccccccCCCCCCCcccCCcccccccccccCcCCCC--CCCCCccc-
Q ss_pred cCCCCCCCCcccCCCCcc-------cccCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000292 1425 TLPPGPGAVTAVAPWPVN-------MTLHPRPATVLPTVNPMCSSPHQPYPSPPSTPNMMQ 1478 (1713)
Q Consensus 1425 ~~~~~~~~~~~~~~~p~n-------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 1478 (1713)
+|+-|+..|.--|-|+| -.+||||-+.|++.+||- .+.++.-..|+|+|
T Consensus 342 -~Pppp~p~p~~PP~p~~~~~~r~P~gppp~~P~~l~p~~p~G----p~p~~f~~pp~li~ 397 (487)
T KOG4672|consen 342 -FPPPPPPPPMRPPHPGNGMPPRMPPGPPPGPPHGLSPPNPMG----PPPSSFQAPPELIR 397 (487)
T ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCccccCchHhhc
No 484
>PF15336 Auts2: Autism susceptibility gene 2 protein
Probab=28.37 E-value=3.7e+02 Score=31.09 Aligned_cols=18 Identities=28% Similarity=0.408 Sum_probs=11.5
Q ss_pred CCCCCCCcc--cccCCCCCc
Q 000292 1526 GPFLPGYHP--MEFSVPPPV 1543 (1713)
Q Consensus 1526 ~~~~~~~~~--~~~~~~~~~ 1543 (1713)
=.+|=.+|- --||-|||-
T Consensus 145 hdpWnRLhRtPpsFPtpP~W 164 (212)
T PF15336_consen 145 HDPWNRLHRTPPSFPTPPPW 164 (212)
T ss_pred CccccccCCCCCCCCCCCCC
Confidence 357999994 456655533
No 485
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=28.35 E-value=1.7e+02 Score=28.87 Aligned_cols=35 Identities=17% Similarity=-0.073 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000292 802 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 836 (1713)
Q Consensus 802 a~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~ 836 (1713)
+..+.+.|+.+-..|+.++|+.+|++++..+....
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence 34455566666677899999999999999887743
No 486
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=28.15 E-value=2e+02 Score=28.37 Aligned_cols=37 Identities=22% Similarity=0.031 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000292 762 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 798 (1713)
Q Consensus 762 ay~~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~Dh 798 (1713)
.+...|..+-..|+.++|+.+|++++.+.++......
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3344444555568999999999999999988655443
No 487
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=27.62 E-value=1.4e+03 Score=29.25 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCCcc
Q 000292 1488 TQPQGVPTSTFPVT 1501 (1713)
Q Consensus 1488 ~~~~~~~~~~~p~~ 1501 (1713)
.++..-|+++-|--
T Consensus 348 ~pppp~pp~~~p~~ 361 (518)
T KOG1830|consen 348 VPPPPSPPSTIPFV 361 (518)
T ss_pred CCCCCCCCCCCCCc
Confidence 34444444444433
No 488
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=27.35 E-value=63 Score=39.86 Aligned_cols=102 Identities=16% Similarity=0.031 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC------C-----CchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000292 765 LLAVVLYHTGDFNQATIYQQKALDINERELGL------D-----HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 833 (1713)
Q Consensus 765 ~LA~vy~~lGd~deAle~~~KAL~I~Er~lG~------D-----hp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~ 833 (1713)
..+.-.+..++|..|..-|++++......-.. + .......+.+++.+-...+.+..|+.....+++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~--- 303 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR--- 303 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc---
Confidence 35666778888888888888888765531100 1 112335677899999999999998877666665
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000292 834 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 874 (1713)
Q Consensus 834 ~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ 874 (1713)
..+....+++..+..|..+.++++|++.++.|....
T Consensus 304 -----~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~ 339 (372)
T KOG0546|consen 304 -----DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKA 339 (372)
T ss_pred -----cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccC
Confidence 345567788999999999999999999999887654
No 489
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.32 E-value=6.3e+02 Score=29.19 Aligned_cols=30 Identities=10% Similarity=0.001 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 890 HAIAIALSLMEAYPLSVQHEQTTLQILRAK 919 (1713)
Q Consensus 890 ~nLA~ay~~lGd~eeAle~lekALeI~kk~ 919 (1713)
...+......|++++|...+++|.....+.
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~L 62 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKL 62 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 334556677899999999999888766543
No 490
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=26.04 E-value=3.6e+02 Score=26.16 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000292 716 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 752 (1713)
Q Consensus 716 ~~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~ 752 (1713)
..+..++..|...-..|+|++|+.+|.++++.+....
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~ 40 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPAL 40 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888899999999999999999987654
No 491
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=25.86 E-value=1e+03 Score=29.66 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=28.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHh
Q 000292 711 AACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVAV 751 (1713)
Q Consensus 711 ~~~~s~~A~~LlelA~~~l~qG---------~~eeAle~lqeAL~l~eqv 751 (1713)
.......+-.+|+.|..+.+.+ .+.+|..+|++|-.++.-+
T Consensus 100 ~~~~fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l 149 (377)
T PF03097_consen 100 SSLAFEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYL 149 (377)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 3345566777888887765543 3568899999988876544
No 492
>KOG3663 consensus Nuclear factor I [Transcription]
Probab=25.54 E-value=3.6e+02 Score=33.89 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=9.4
Q ss_pred CCCCCCccCCCCCCCCC
Q 000292 1494 PTSTFPVTTSAFHHNHF 1510 (1713)
Q Consensus 1494 ~~~~~p~~~~~~~~~~~ 1510 (1713)
++.-|+-.+--||+|+-
T Consensus 395 ~s~yf~hp~iry~~~l~ 411 (518)
T KOG3663|consen 395 SSPYFTHPTIRYHPHLG 411 (518)
T ss_pred CCcccCCcccccCCCCC
Confidence 44455555666666643
No 493
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.53 E-value=1.7e+02 Score=37.34 Aligned_cols=7 Identities=14% Similarity=0.055 Sum_probs=3.2
Q ss_pred CCCcccc
Q 000292 1438 PWPVNMT 1444 (1713)
Q Consensus 1438 ~~p~n~~ 1444 (1713)
+||-+|-
T Consensus 410 s~p~pq~ 416 (483)
T KOG2236|consen 410 SGPSPQQ 416 (483)
T ss_pred CCCCccc
Confidence 4554443
No 494
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.50 E-value=98 Score=41.29 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=26.1
Q ss_pred CCCCcccCCCCcccccCCCCccccCCCCCCCCCCCCCCCCC
Q 000292 1430 PGAVTAVAPWPVNMTLHPRPATVLPTVNPMCSSPHQPYPSP 1470 (1713)
Q Consensus 1430 ~~~~~~~~~~p~n~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 1470 (1713)
+-..|+++|=++-..+-+||.++|++| -||+|.+-|+-
T Consensus 118 ~qpL~~a~p~~m~~s~v~~~Pv~vatv---pS~~~~sl~nG 155 (1118)
T KOG1029|consen 118 SQPLPPAAPRRMSSSPVVGPPVSVATV---PSSRHNSLPNG 155 (1118)
T ss_pred CCCCCcccccccCCCccCCCCcccccC---CCCCCCCCCCC
Confidence 445666777776667777888888874 36677777764
No 495
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.49 E-value=9.5e+02 Score=33.43 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=43.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000292 725 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 792 (1713)
Q Consensus 725 A~~~l~qG~~eeAle~lqeAL~l~eqv~G~dhp~~A~ay~~LA~vy~~lGd~deAle~~~KAL~I~Er 792 (1713)
.++|++.|+|+.|+++....-. ..-.++..-|..|++.++|..|.++|-+.+.-++.
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~p~-----------~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTRPD-----------ALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHHhcchHHHHHHhccCCHH-----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 4889999999999888765421 12346777889999999999999998887665554
No 496
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=24.93 E-value=1.5e+02 Score=33.42 Aligned_cols=49 Identities=27% Similarity=0.441 Sum_probs=41.1
Q ss_pred CCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH
Q 000292 795 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 843 (1713)
Q Consensus 795 G~Dhp~ta~ay~nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~ 843 (1713)
+...+.....+.+|-.-|...|+|+.|....+.|++-.....|.+||++
T Consensus 133 ~~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 133 GYEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp -TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 4566778899999999999999999999999999999999999999863
No 497
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=24.74 E-value=5.6e+02 Score=25.01 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc-CCCCHHHHHH
Q 000292 889 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKL-GPDDLRTQDA 930 (1713)
Q Consensus 889 ~~nLA~ay~~lGd~eeAle~lekALeI~kk~L-G~dh~~t~ea 930 (1713)
+...|.-+-..|+|++|+.+|.+|++.+...+ ...++.....
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~ 51 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKN 51 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 34445566678999999999999999988755 2334444333
No 498
>PRK09169 hypothetical protein; Validated
Probab=24.53 E-value=1.3e+03 Score=35.65 Aligned_cols=113 Identities=17% Similarity=0.049 Sum_probs=44.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 000292 807 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 886 (1713)
Q Consensus 807 nLA~vy~~lG~~eeALe~yerALeL~~~i~G~dhP~~a~a~~NLA~iy~~lG~~eeAle~lekALei~ek~~G~d~~~tA 886 (1713)
+|+.++..+.++.+.-.+-..++.+...+....+......-..+++++..+.+|.+.-.+-+-+..+..++........+
T Consensus 668 ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~~~acr~A~~~LA~rL~~~~~l~~a 747 (2316)
T PRK09169 668 GLANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPEEEACRAAAEALAGRLAADADLRQA 747 (2316)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccCccHHHHHHHHHHHHHhcChHHHhh
Confidence 34444444444444334444444444433222222222222345555555555554333222233333333211111122
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000292 887 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 919 (1713)
Q Consensus 887 ~a~~nLA~ay~~lGd~eeAle~lekALeI~kk~ 919 (1713)
..-..|++++..+-+|-+.-.+.+-++.+....
T Consensus 748 ~~aQ~lAnsLNaLsKwp~~~~c~~a~~~La~~l 780 (2316)
T PRK09169 748 MNPQGLANSLNALSKWPQEPACQQAALLLAERL 780 (2316)
T ss_pred cCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 222334555554445544444444445555443
No 499
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=24.38 E-value=2.9e+02 Score=35.27 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=16.5
Q ss_pred CCCCCCCccCCCCCCCCC
Q 000292 1493 VPTSTFPVTTSAFHHNHF 1510 (1713)
Q Consensus 1493 ~~~~~~p~~~~~~~~~~~ 1510 (1713)
+|++++|-.++.|||+||
T Consensus 179 ~~~~~~p~fs~~~~p~~~ 196 (605)
T KOG4217|consen 179 MPNPRLPLFSGPPSPPHF 196 (605)
T ss_pred CCcccCccccCCCCCCCC
Confidence 478899999999999998
No 500
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=24.06 E-value=4.1e+02 Score=25.25 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000292 717 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 752 (1713)
Q Consensus 717 ~A~~LlelA~~~l~qG~~eeAle~lqeAL~l~eqv~ 752 (1713)
.+..+...|...-..|++++|+.+|.+|+..+....
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 455677778888889999999999999999887764
Done!