Citrus Sinensis ID: 000294

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710-

MIRTRQLGRNSSAQRTKTNMPTSTFCPWHAVHTQSVSNNQREGNQTAVFSKSRLSDDFLSFNFSAKIPPRIVCDPEMATDKGKAVAVGKDAYGKRKRNDGSSGVKPHNRKRKNRSVLQFVEDAADVDYDDDDEEEVGNESDNSGGFADDDFMEELFDAQPKVNNEMGQAHNLPFIPKEEEMDEEEFDKMMEERYKSNKLIRYAEEDYEAKKMLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATVKLIPRIDLQALAAKFGGGVAMKKTDSPAPRLISPSELEEFRPLIQYRRDRDTGKVFENLDGMMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVGKGGDKGEGSSGSSLENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACEGKGGGSGASGFEEFPSSPKSPLSPKRSWQAREQNTEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSASFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGKNKDACDNQANWKKSDSWDKGKKIIGNSTSSWGDKTAEKNEPDSWGKGKDGSSGSKSDWNSSALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGSSWSKEPDQQHRKNGGSSWGNRDGGSSWSKQTDQQDNQEKPLESDGGRGSGGRWGQGGGQGGGQEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCNWNSGSSDGDGNNGSGGWGKKSNWNSGSSGAGESKDTDWNKKSNLNCGSSDGDGNNSSGWDKKGNWNAGSSGDGESKDTDWNKKCNWNSGSNDGDGNNGSGWGKKSNWNSGSNVAGESNDSNWAKKGNWNSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWNSRSEDQPEPFNNRGSGNFRGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGGFGGRGRGRRDQGGGWNNNDSGDYKSFDSSQGVKNGGEWSRSNDGAGSNDSSIANDVKGPNDQVVGRNKGSNGSAQSGGWGNQGSGWSSGTGSGNKGSNDSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDSGNRGSNSDQPKSWNQSSVATDGGRSKDAGEGSSRGWGKTAGSSWEKGNDGSGKGGW

ccccccccccccccccccccccccccccccEEEccccccccccccEEEEEccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHcccccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccEEEEEEccHHHHHHHHHccccccccccEEEcHHHHHHHHcccccccccccccEEEEEccccccccEEEEEEEccccEEEEEEEEccccHHHHHHcccccccccccccccccccHHHHHHccccEEEccccccccEEEEccccEEEccEEEEEEEccEEEEccccccHHHHHcccccccccccHHHHHHHHHHccccccEEEEcccccccEEcccccccccccEEEEEEEccccEEEEEEEEcccEEEEccccccccEEEEEEcccccccccccccccccccccEEccccEEEEEcccccccEEEEEEEEccEEEEEccccccccEEEEEEccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEEEccEEEEEEcccccEEEEcccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccEcccccccccccccccccccccccccEEEEEEccccccccccEEEEEcccccccccEEEccccccccEEEcccHccccccEEEcccccccccEccccccccccccHHcccccHHHHHHHHcccccccHHHHHccccHHccccccccccHHHHHcccHHHccccccccccccccccHcccHHHHHHHHHHHHHcccHHHHccccHHccccccHHHcccccccccEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEccHHHHHHHHHcccccEcccEEEEEHHHcHHHEEEEccccccccccEEEEEcccccccEEEEEEEcccccEEEEEEEEEccccHHHHHccccHcHccccccccccccHHHHHHHcccEEEccccccccEEEEEcccEEEccEEEEEEEEEEEEEccccccHHHHHHHccccccccccHHHHHHHHHHccccccEEEEccccEEEEEEcccccccEEcccEEEEccccEEEEEEEEccEEEEEEEcccccccEEEEcHHHHHccccccccEEHHccccEEEcccEEEEEEccccccEEEEEEEEccEEEEEEccccccccEEEEEcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccEcccEEEEEEccccccEEEEEEccccEEEEEEEcccEEEEEEccHEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

mirtrqlgrnssaqrtktnmptstfcpwhavhtqsvsnnqregnqtavfsksrlsddflsfnfsakipprivcdpematdkgkavavgkdaygkrkrndgssgvkphnrkrknrsVLQFVEdaadvdyddddeeevgnesdnsggfaddDFMEELFDAQpkvnnemgqahnlpfipkeeemdeEEFDKMMEERYKSNKLIRYAEEDYEAKKMLEReyhmpcpedptiwkvkcmagreRQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGlsgiyysrlapvpknEVSHLLSAQIKrnevsegtwayvkngkykgdLAQVVYVNNARKRATVKLIPRIDLQALAAKFgggvamkktdspaprlispseleefrPLIQyrrdrdtgkvfenldgmmlkdgylykkvsidslscwgvvpseeellkfqpsesnesaDLEWLSQLYGERkkkrttivgkggdkgegssgsslensFELYELVCFGRKDFGLIVGMEKDDHYKIlkegsegpavvTVERrtlkngpfdmkftALDQSMKVIslndtarvsegpskdrqGIVKKIYRGILFiydenetenggyfcsksqhcektkveacegkgggsgasgfeefpsspksplspkrswQAREQNtefkrgdrdgmfAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGehlaevrgksfitstsddqgsasfkpfdplgagggsgdwmsaattsaegdrwnaggasagrsswpsfpvvgtslhaesnpanafgsgdngankdeedsawgskVNAIQNSSWGlaaaegknedcWNKAAVKNIesnngayggwgkedagsslqdsqdnwgknkdacdnqanwkksdswdkgkkiignstsswgdktaeknepdswgkgkdgssgsksdwnssalatenptvswgnasggwtqqkggnmdersgwkkddsgnqdqrsgwnkpktfgadvgsswnkqdgicssdvqdggsswakqdggsswgkknggslmgkqdggsswgkqdggsslgkqdggsswgkqdgrsslakqdggsswgkqdrgsswgkqdegsswskrdggsswgkqdggsslakqdggsswgkqdggsslgkqdggsswskqdggsswgkqdggsswgkqdggsswgkqdggsswskepdqqhrknggsswgnrdggsswskqtdqqdnqekplesdggrgsggrwgqgggqgggqevsdqygrgsfdqgsekgtggmgdqgngwnrrdkgtdwnkkcnwnsgssdgdgnngsggwgkksnwnsgssgageskdtdwnkksnlncgssdgdgnnssgwdkkgnwnagssgdgeskdtdwnkkcnwnsgsndgdgnngsgwgkksnwnsgsnvagesndsnwakkgnwnsgsddanqesswgkkqgnwnsgsrdghqesswgkksdwnsrsedqpepfnnrgsgnfrgrggfrgrgdsdrggfggrgrtnrggyggrgrfdregfggrggsdrggfggrgssdrggfggrgrgrrdqgggwnnndsgdyksfdssqgvknggewsrsndgagsndssiandvkgpndqvvgrnkgsngsaqsggwgnqgsgwssgtgsgnkgsndsnisnkgpndqgggwnkgsggsaqsgawgnqgsgwnggtdsgnrgsnsdqpkswnqssvatdggrskdagegssrgwgktagsswekgndgsgkggw

mirtrqlgrnssaqrtktnmptstfcPWHAVHTQSVSNNQREGNQTAVFSKSRLSDDFLSFNfsakipprivcdpematdkgkavavgkdaygkrkrndgssgvkphnrkrknrsvlqfvedaadvdyddddEEEVGNESDNSGGFADDDFMEELFDAQPKVNnemgqahnlpfipkeeeMDEEEFDKMMEERYKSNKLIRYAEEDYEAKKMLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAyvkngkykgdLAQVVYVNNARkratvklipridLQALAAKFGGGVAMKKtdspaprlispseleefrpliqyrrdrdtgkvfenLDGMMLKDGYLYKKVSIDSLSCWGVVPSEEELLkfqpsesnesadLEWLSQLygerkkkrttivgkggdkgegssgssleNSFELYELVCFGRKDFGLIVGMEKDDHYKIlkegsegpavvtvERRTLKNGPFDMKFTALDQSMKVISLNdtarvsegpskdrqgivKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACEGKGGGsgasgfeefpsspksplspkrswQAREQNtefkrgdrdgmfaVGQTlrirvgplKGYLCRVLAVRYSDvtvkldsqqkiltvkgehlaevrgksfitstsddqgsaSFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGknkdacdnqanwkksdswdkgkkiignstsswgdktaeknepdswgkgkdgssgskSDWNSSALAtenptvswgnasggwtqqkggnMDERSGWKKddsgnqdqrsgwnkPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSslgkqdggsswgkqdgrsslakqdggsswgkqdrgsswgkqdegsswskrdggsswgkqdggsslakqdggsswgkqdGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGgsswskepdqqhrknggsswgnrdGGSSWSKQTDQQDNQEKplesdggrgsggrWGQGGGQGGGQEVSDQYGRGSFDqgsekgtggmgdqgngwnrRDKGTDWNKKcnwnsgssdgdgnngsgGWGKKSNWNSGSSGAGESKDTDWNKKSNLNCGSSDGDGNNSSGWDKKGNWNAGSSGDGESKDTDWNKKCNWnsgsndgdgnngsGWGKKSNWNSGSNVAGESNDSNWAKKGNWNSGsddanqesswgkkqgnwnsgsrdghqesswgkksdwnsrsedqpepfnnrgsgnfrgrggfrgrgdsdrggfggrgrtnrggyggrgrfdregfggrggsdrggfggrgssdrggfggrgrgrrdqgggwnnndsgdyksFDSSQGVKNGGEWSRSNDGAGSNDSSIANDVKGPNDQVVGRNKgsngsaqsggwgnqGSGWSSGTGSGNKGSNDSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDSGNrgsnsdqpkswnqssvatdggrskdagegssrgwgktagsswekgndgsgkggw

MIRTRQLGRNSSAQRTKTNMPTSTFCPWHAVHTQSVSNNQREGNQTAVFSKSRLSDDFLSFNFSAKIPPRIVCDPEMATDKGKAVAVGKDAYGKRKRNDGSSGVKPHNRKRKNRSVLQFVedaadvdyddddeeevgnesdnsgGFADDDFMEELFDAQPKVNNEMGQAHNLPFIPkeeemdeeefdkmmeeRYKSNKLIRYAEEDYEAKKMLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATVKLIPRIDLQALAAKFGGGVAMKKTDSPAPRLISPSELEEFRPLIQYRRDRDTGKVFENLDGMMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVgkggdkgegssgssLENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVeacegkgggsgasgfeefpsspksplspkRSWQAREQNTEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSASFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGKNKDACDNQANwkksdswdkgkkiiGNSTSSWGDKTAEKNEPdswgkgkdgssgsksdwnssALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDggsswgkknggsLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGSSWSKEPDQQHRKNGGSSWGNRDGGSSWSKQTDQQDNQEKPLESDggrgsggrwgqgggqgggqEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCnwnsgssdgdgnngsggwgkksnwnsgssgAGESKDTDWNKKsnlncgssdgdgnnssgWDKKGNWNAGSSGDGESKDTDWNKKCnwnsgsndgdgnngsgwgkksnwnsgsnVAGESNDSNWAKKGNWNSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWNSRSEDQPEPFnnrgsgnfrgrggfrgrgdsdrggfggrgrtnrggyggrgrfdregfggrggsdrggfggrgssdrggfggrgrgrrdqgggwnnndSGDYKSFDSSQGVKNGGEWSRSNDGAGSNDSSIANDVKGPNDQVVGRNKgsngsaqsggwgnqgsgwssgtgsgnkgsndsnisnkgPNDQgggwnkgsggsaqsgawgnqgsgwnggTDSGNRGSNSDQPKSWNQSSVATDGGRSKDAGEGSSRGWGKTAGSSWEKGNDGSGKGGW

************************FCPWHAVH***********************DDFLSFNFSAKIPPRIVCD*****************************************************************************************************************************IRYA***Y****MLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATVKLIPRIDLQALAAKFGGGVA*******************FRPLIQYRRDRDTGKVFENLDGMMLKDGYLYKKVSIDSLSCWGVVPS*******************WL********************************SFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVI*****************GIVKKIYRGILFIYDENETENGGYFCSK********************************************************GMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVR***************************************************************************************************I**SSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGW*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

*********************TSTFCPWHAV*****************FSKSRLSDDFLSFNFSA********************************************************DAADVDYDDDDEEEVGNES**S******************************************FDKMMEERY*********************EYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATVKLIPRIDL**********************LISPSELEEFR*******DRDTGKVFENLDGMMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPS*********************************************ELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCE*******************************************************VGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVK*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

*******************MPTSTFCPWHAVHTQSVSNNQREGNQTAVFSKSRLSDDFLSFNFSAKIPPRIVCDPEMATDKGKAVAVGKDAYGK****************RKNRSVLQFVEDAADVDY*************NSGGFADDDFMEELFDAQPKVNNEMGQAHNLPFIPKEEEMDEEEFDKMMEERYKSNKLIRYAEEDYEAKKMLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATVKLIPRIDLQALAAKFGGGVAMKKTDSPAPRLISPSELEEFRPLIQYRRDRDTGKVFENLDGMMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVGKG***********LENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKV**************************************TEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFI********SASFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKE***************NKDACDNQANWKKSDSWDKGKKIIGNSTSS********************************LATENPTVSWGNASGGWTQ************************GWNKPKTFGADVGSSWNKQDGICSSD******************KKNGGSL****************************************************************************************************************************************************************************************************************SDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCNWNSGSSDGDGNNGSGGWGKKSNW*************DWNKKSNLNCGSSDGDGNNSSGWDKKGNWNA***********DWNKKCNWNSGSNDGDGNNGSGWGKKSNWNSGSNVAGESNDSNWAKKGNWNS***********************************************FNNRGSGNFRGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGGFGGRGRGRRDQGGGWNNNDSGDYKSF***********************SSIANDVKGPNDQVVGRN*******************************DSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDS********************************************************

*********************TSTFCPWHAVHTQSVSNNQ***NQTAVFSKSRLSDDFLSFNFSAKIPPRIVCDPEMATDK******************************************************************DDDF*EELFDA***********************DEEEFDKMMEERYKSNK**********AKKMLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATVKLIPRIDLQALAAKF********TDSPAPRLISPSELEEFRPLIQYRRDRDTGKVFENLDGMMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVGKGGDKGEGSSGSSLENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACEG******************************************GMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSASFKPFDPLGAGGGSGD**SAATTS*EGDRWNAGGAS*****WPSF*********************NGA**DEEDSAWGSKVNAI*N*SWGLAAAEGKNED******V**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1711	2.2.26 [Sep-21-2011]
Q9STN3		1041	Putative transcription el	no	no	0.167	0.274	0.449	8e-64
O80770		989	Putative transcription el	no	no	0.165	0.286	0.436	1e-60
O13936		990	Transcription elongation	yes	no	0.136	0.236	0.334	6e-33
Q4PIC4		1057	Transcription elongation	N/A	no	0.164	0.266	0.325	1e-31
Q6FRZ5		1010	Transcription elongation	yes	no	0.156	0.265	0.323	2e-29
P27692		1063	Transcription elongation	yes	no	0.171	0.276	0.304	2e-28
Q2UGU3		1026	Transcription elongation	yes	no	0.191	0.318	0.292	2e-27
Q9DDT5		1084	Transcription elongation	yes	no	0.146	0.231	0.300	3e-27
Q4WP96		1058	Transcription elongation	yes	no	0.144	0.233	0.310	2e-26
Q5ZI08		1079	Transcription elongation	yes	no	0.137	0.217	0.302	4e-26

>sp\|Q9STN3\|SPT51_ARATH Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2	Back alignment and function desciption

 Score =  246 bits (629), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 134/298 (44%), Positives = 192/298 (64%), Gaps = 12/298 (4%)

Query: 174 FIPKEE-EMDEEEFDKMMEERYKSNKLIRYAEEDYEAKKMLEREYHMPCPEDPTIWKVKC 232
           F+P++E + D E+ ++ ++ER+ S    R+ EE  E    +E++  +P   DP +W VKC
Sbjct: 134 FLPRDENDEDVEDLERRIQERFSS----RHHEEYDEEATEVEQQALLPSVRDPKLWMVKC 189

Query: 233 MAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSG 292
             GRER+ A CLMQKF+D    G+ +QI S  A+DH+K FI++EADK+  + EA KG+  
Sbjct: 190 AIGREREVAVCLMQKFIDR---GADLQIRSVVALDHLKNFIYVEADKEAHVKEAIKGMRN 246

Query: 293 IYYS-RLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATV 351
           IY + ++  VP  E++ +LS + K  ++S  TW  +K G YKGDLA+VV V+N R+R TV
Sbjct: 247 IYANQKILLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTV 306

Query: 352 KLIPRIDLQALAAKFGG-GVAMKKTDSPAPRLISPSELEEFRPLIQYRRDRDTGKVFENL 410
           KLIPRIDLQALA+K  G  V+ KK   P PR ++  E  E    ++ RRD  TG  FEN+
Sbjct: 307 KLIPRIDLQALASKLDGREVSKKKAFVPPPRFMNIDEARELHIRVERRRDHMTGDYFENI 366

Query: 411 DGMMLKDGYLYKKVSIDSLSCWGVVPSEEELLKF-QPSESNESADLEWLSQLYGERKK 467
            GM+ KDG+ YK+VS+ S++   V P+ +EL KF +PSE+ E  D   LS L+  RKK
Sbjct: 367 GGMLFKDGFHYKQVSLKSITVQNVTPTFDELEKFNKPSENGE-GDFGGLSTLFANRKK 423

May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex.
Arabidopsis thaliana (taxid: 3702)

>sp\|O80770\|SPT52_ARATH Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=2	Back alignment and function description

>sp\|O13936\|SPT5_SCHPO Transcription elongation factor spt5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt5 PE=1 SV=1	Back alignment and function description

>sp\|Q4PIC4\|SPT5_USTMA Transcription elongation factor SPT5 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SPT5 PE=3 SV=1	Back alignment and function description

>sp\|Q6FRZ5\|SPT5_CANGA Transcription elongation factor SPT5 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SPT5 PE=3 SV=1	Back alignment and function description

>sp\|P27692\|SPT5_YEAST Transcription elongation factor SPT5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPT5 PE=1 SV=1	Back alignment and function description

>sp\|Q2UGU3\|SPT5_ASPOR Transcription elongation factor spt5 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=spt5 PE=3 SV=1	Back alignment and function description

>sp\|Q9DDT5\|SPT5H_DANRE Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1 SV=1	Back alignment and function description

>sp\|Q4WP96\|SPT5_ASPFU Transcription elongation factor spt5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=spt5 PE=3 SV=1	Back alignment and function description

>sp\|Q5ZI08\|SPT5H_CHICK Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1711
255586801		1547	suppressor of ty, putative [Ricinus comm	0.542	0.599	0.553	0.0
224100723		1853	hypothetical protein POPTRDRAFT_765239 [	0.523	0.483	0.540	0.0
359486871		2667	PREDICTED: uncharacterized protein LOC10	0.641	0.411	0.477	0.0
296085968		675	unnamed protein product [Vitis vinifera]	0.390	0.991	0.691	0.0
15237667		1493	kow domain-containing transcription fact	0.637	0.730	0.464	0.0
297806403		1476	hypothetical protein ARALYDRAFT_487210 [	0.618	0.717	0.468	0.0
224109844		1697	predicted protein [Populus trichocarpa]	0.443	0.447	0.555	0.0
449465322		1690	PREDICTED: uncharacterized protein LOC10	0.580	0.588	0.491	0.0
356574169		1495	PREDICTED: uncharacterized protein LOC10	0.383	0.439	0.607	0.0
356534382		712	PREDICTED: putative transcription elonga	0.389	0.936	0.616	0.0

>gi\|255586801\|ref\|XP_002534015.1\| suppressor of ty, putative [Ricinus communis] gi\|223525980\|gb\|EEF28368.1\| suppressor of ty, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  996 bits (2576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/1026 (55%), Positives = 688/1026 (67%), Gaps = 98/1026 (9%)

Query: 73   CDPEMATDKGKAVAVGKDAYGKRKRNDGSSGVKPHNRKRKNRSVLQFVEDAADVDYDDDD 132
            C  +M+  KGK VA G       KR           RKR NR+VL+F ED+AD+D D+++
Sbjct: 36   CHRKMSA-KGKEVATGS------KRKHSDGDGSGGGRKRNNRAVLRFFEDSADLDEDEEE 88

Query: 133  EEEVGNESDNSGGFADDDFMEELFDAQPKVNNEMGQAHNLPFIPKEEEMDEEEFDKMMEE 192
             +    E             EE  D + K+  E  +  N+PF+PKEE M EEEFDKMMEE
Sbjct: 89   SDFSDLE-------------EEEPDIELKLKKEPAKTPNIPFVPKEEVMYEEEFDKMMEE 135

Query: 193  RYKS-NKLIRYAEEDYEAKKMLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDL 251
            RY+  +  +RYAE+ YEAK  +ER+  +    DP +WKVKCM GRER SAFCLMQKFVDL
Sbjct: 136  RYRDGSTFVRYAEDVYEAK-TVERDSILTSSRDPIVWKVKCMVGRERHSAFCLMQKFVDL 194

Query: 252  QSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLS 311
            +SLG+K+QIISAF+VDH+KGF+FIEADKQCDINEACKGL  IY +R+AP+PKNEVSH+LS
Sbjct: 195  KSLGTKLQIISAFSVDHVKGFVFIEADKQCDINEACKGLCSIYSTRVAPIPKNEVSHVLS 254

Query: 312  AQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATVKLIPRIDLQALAAKFGGGVA 371
             + K N V EG WA VK+GKYKGDLAQ+V VN+ARKRATVKLIPRIDLQALA KFGGGV+
Sbjct: 255  VRSKSNAVREGMWARVKSGKYKGDLAQIVTVNDARKRATVKLIPRIDLQALAQKFGGGVS 314

Query: 372  MKKTDSPAPRLISPSELEEFRPLIQYRRDRDTGKVFENLDGMMLKDGYLYKKVSIDSLSC 431
            MK   +PAPRLIS SELEEFRPL+Q+RRDRDTG   E LDG+MLKDGYLYK+VS+DSLSC
Sbjct: 315  MKNAATPAPRLISSSELEEFRPLVQHRRDRDTGLFVEVLDGLMLKDGYLYKRVSVDSLSC 374

Query: 432  WGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVGKGGDKGEGSSGSSLENS 491
            WGVVPSEEELLKFQPSE+ ES + EWL QLYG  KKKR   + KGG+KGE SSGS +++S
Sbjct: 375  WGVVPSEEELLKFQPSENTESDNTEWLKQLYGSPKKKRIIGIDKGGEKGESSSGSGIQHS 434

Query: 492  FELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQ 551
            FELY+LVCF RKDFG+I+GMEKDD+YKILKEG E P VVTV R  +K GP DM+FTALD 
Sbjct: 435  FELYDLVCFSRKDFGVIIGMEKDDYYKILKEGPEAPVVVTVARNDIKKGPSDMRFTALDH 494

Query: 552  SMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKV- 610
              K+IS+ND  +V EGP KDRQG VK+IYRGI+F++D+NETENGGYFCSK+Q CEK K+ 
Sbjct: 495  RTKIISVNDMVKVVEGPLKDRQGTVKQIYRGIIFMHDQNETENGGYFCSKAQLCEKIKLS 554

Query: 611  -EACEGKGGGSGASGFEEFPSSPKSPLSPKRSWQAREQNTEFKRGDRDGMFAVGQTLRIR 669
             + C  KGG S +  FE+ PSSPKSPLSPKR WQ ++ N +F RG++DGMF++GQTLRIR
Sbjct: 555  FDVCNEKGGESSSFSFEDIPSSPKSPLSPKRPWQTKDNNWDFNRGEKDGMFSIGQTLRIR 614

Query: 670  VGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSASFKP 729
            VGPLKGYLCRVLA+RYSDVTVK+DS+ KI TVK EHL+E+RGKS  T  S+D GS+SFKP
Sbjct: 615  VGPLKGYLCRVLAIRYSDVTVKVDSKHKIFTVKCEHLSEIRGKSSATPLSEDPGSSSFKP 674

Query: 730  FDPLGAGGGSGDWMSAATTSAEGDRWNAGGASA-GRSSWPSFPVVGTSLHAESNPANAFG 788
            FD LG  GGS  W   A TSA+GDRWNAGG +A     W       TS + ES+   + G
Sbjct: 675  FDLLGTEGGSKGWTDGAGTSADGDRWNAGGITAESEDGWNK-----TSTNIESSGGTSGG 729

Query: 789  SGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGK 848
             G    +  +    WG       NS+   AAA       WNK   KN+  N      WG 
Sbjct: 730  WGKAADSSKDSGDGWGQAKLDPGNSTLDAAAA-------WNKE--KNVAEN--PTSSWGD 778

Query: 849  EDAGSSLQDSQDNWGKNKDACDNQANWKKSDSWDKGKKIIGNST-----------SSWGD 897
                ++ ++ QD+W  +KD  ++++ W+KS S+  G+  +  ST            +W  
Sbjct: 779  V---ATAKNQQDSW-TSKDTVESRS-WEKSKSFTAGEDNLSKSTGWNQQKSQNKWDTWRS 833

Query: 898  KTAEKN----EPDSWGKGKDGSSGSKSDWNSSALATENPTVSWGNASGGWTQQK------ 947
                +N    + DSWGK KD S G K DW SS    E PT SWGN  G W Q+       
Sbjct: 834  TAEAQNKNTVQGDSWGKAKDSSVGGKVDWKSSTATAEKPTKSWGNEGGSWAQESKSTDEA 893

Query: 948  ---------GGNM-----------DERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNK 987
                     G N            ++ +GW    SG+Q Q   WNKPK+ GAD GSSW K
Sbjct: 894  SDWMNGKVDGANQTANWSNQKNQSEDAAGWTTGGSGSQSQTDNWNKPKSSGADGGSSWGK 953

Query: 988  QDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSS 1047
            Q    + D           DGGSSW KK G S + KQ+GGSSWGKQ G SS GKQ+GGSS
Sbjct: 954  QGKPETFDA----------DGGSSWNKK-GESSLEKQEGGSSWGKQGGASSWGKQEGGSS 1002

Query: 1048 WGKQDG 1053
            W KQDG
Sbjct: 1003 WSKQDG 1008

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224100723\|ref\|XP_002311988.1\| hypothetical protein POPTRDRAFT_765239 [Populus trichocarpa] gi\|222851808\|gb\|EEE89355.1\| hypothetical protein POPTRDRAFT_765239 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359486871\|ref\|XP_002272748.2\| PREDICTED: uncharacterized protein LOC100256388 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296085968\|emb\|CBI31409.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|15237667\|ref\|NP_196049.1\| kow domain-containing transcription factor 1 [Arabidopsis thaliana] gi\|332003341\|gb\|AED90724.1\| kow domain-containing transcription factor 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297806403\|ref\|XP_002871085.1\| hypothetical protein ARALYDRAFT_487210 [Arabidopsis lyrata subsp. lyrata] gi\|297316922\|gb\|EFH47344.1\| hypothetical protein ARALYDRAFT_487210 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|224109844\|ref\|XP_002315331.1\| predicted protein [Populus trichocarpa] gi\|222864371\|gb\|EEF01502.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449465322\|ref\|XP_004150377.1\| PREDICTED: uncharacterized protein LOC101208989 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356574169\|ref\|XP_003555224.1\| PREDICTED: uncharacterized protein LOC100818587 [Glycine max]	Back alignment and taxonomy information

>gi\|356534382\|ref\|XP_003535734.1\| PREDICTED: putative transcription elongation factor SPT5 homolog 2-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1711
TAIR\|locus:2179979		1493	KTF1 "AT5G04290" [Arabidopsis	0.430	0.492	0.4	2.7e-245
TAIR\|locus:2040954		989	AT2G34210 [Arabidopsis thalian	0.154	0.266	0.446	5.4e-70
POMBASE\|SPAC23C4.19		990	spt5 "transcription elongation	0.133	0.230	0.342	8.7e-37
ZFIN\|ZDB-GENE-001207-1		1084	supt5h "suppressor of Ty 5 hom	0.140	0.221	0.304	4.4e-36
UNIPROTKB\|Q5ZI08		1079	SUPT5H "Transcription elongati	0.150	0.238	0.305	2.2e-35
SGD\|S000004470		1063	SPT5 "Component of the univers	0.155	0.250	0.304	4.7e-35
DICTYBASE\|DDB_G0287661		1131	spt5 "transcription initiation	0.095	0.145	0.294	9.4e-35
MGI\|MGI:1202400		1082	Supt5 "suppressor of Ty 5" [Mu	0.150	0.237	0.305	1.6e-34
UNIPROTKB\|E9PTB2		1083	E9PTB2 "Uncharacterized protei	0.150	0.237	0.305	1.6e-34
UNIPROTKB\|I3LA48		1083	SUPT5H "Uncharacterized protei	0.150	0.237	0.305	5.4e-34

TAIR\|locus:2179979 KTF1 "AT5G04290" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1317 (468.7 bits), Expect = 2.7e-245, Sum P(4) = 2.7e-245
 Identities = 332/830 (40%), Positives = 427/830 (51%)

Query:   489 ENSFELYELVCFGRKDFGLIVGME-KDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFT 547
             E+S+ELY LVCF RKDFGLIVG++ K D YK+LKEG +GP VVTV ++ ++NGPFD KFT
Sbjct:   434 ESSYELYNLVCFSRKDFGLIVGVDDKGDGYKVLKEGIDGPVVVTVGKKEMQNGPFDSKFT 493

Query:   548 ALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEK 607
             ALD + K IS+ND  ++S+GPS+ +QG+V+++YRGI+F+YDE+E ENGGYFC KSQ CEK
Sbjct:   494 ALDLNKKQISVNDVVKISKGPSEGKQGVVRQVYRGIIFLYDESEEENGGYFCCKSQSCEK 553

Query:   608 TKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RSWQAREQNTEFKRGDRDGMFAVGQT 665
              K+                               + WQ RE+     +GD    +++GQ 
Sbjct:   554 VKLFTEESNEKTGGFDGTAFEDFVSSPKSPLSPEKEWQPRERYNSSNQGDIGSTYSIGQK 613

Query:   666 LRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSA 725
             LRIRVGPLKGYLCRV+A+RYSDVTVKLDSQ KI TVK EHLAEVR ++ + STS D G+ 
Sbjct:   614 LRIRVGPLKGYLCRVIALRYSDVTVKLDSQHKIFTVKSEHLAEVRDRNTVLSTSGDAGTG 673

Query:   726 SFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNP-A 784
             SF+PF  LG    +GDW   A TS+EG  WN GG S       +       L  E NP  
Sbjct:   674 SFQPFGMLGTESSTGDWAIGAGTSSEGGNWNIGGPSTDSHESLNIERNMVQLCREKNPWG 733

Query:   785 NAFGSGDNGAN-KDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAY 843
              +  + D      D+  SAW +   A +N      A+       WN    K   S  G  
Sbjct:   734 GSKPTSDVSPTVADDNTSAWANA--AAENKP----ASASDQPGGWNPWG-KTPASEAGTV 786

Query:   844 GGWGKEDAGSSLQDSQDNWGKNKDACDNQANXXXXXXXXXXXXXXGNSTSS-WG------ 896
              GWG   A S+++ S  +W K   +  N A+                   S WG      
Sbjct:   787 SGWGDTSA-SNVEAS--SWEKQGASTSNVADLGSWGTHGGSSGGNKQDEDSVWGKLCEAS 843

Query:   897 DKTAEKNEPXXXXXXXXXXXXXXXXXXXXALATENPTVSWGN-------ASGG--WTQQ- 946
             + + +K E                     + A++   VSWG        + GG  W+ Q 
Sbjct:   844 ESSQKKEESSWGKKGGSDGESSWGNKDGNSSASKKDGVSWGQQDKGSDESKGGSAWSNQC 903

Query:   947 ----KGGNMDERSGWKK---DDSGNQDQRSGWNKPKTFGADVGSSWNKQ-DGICSSDVQD 998
                  G   D  SGW K   D + N      W +P       GSSW K+ DG  S   +D
Sbjct:   904 GDFGSGKKKDGSSGWNKSAEDSNANSKGVPDWGQPND-----GSSWGKKGDGAASWGKKD 958

Query:   999 GGSSWAKQDXXXXXXXXXXXXLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLA 1058
              G SW K+D               K DGGSSWGK+D G    K DGGSSW K        
Sbjct:   959 DGGSWGKKDDG------------NKDDGGSSWGKKDDGQ---KDDGGSSWEK-------- 995

Query:  1059 KQDGGSSWGKQDRG-SSWGKQDEGSS-WSKRD-GGSSWGKQDGGSSL--AKQDGGSSWGK 1113
             K DGGSSWGK+D G SSWGK+D+G S W K+D GGSSWGK+D G SL   K DG SSWGK
Sbjct:   996 KFDGGSSWGKKDDGGSSWGKKDDGGSLWGKKDDGGSSWGKEDDGGSLWGKKDDGESSWGK 1055

Query:  1114 QDGG-SSLGKQD-GGSSWSKQD-GGSSWGKQD-GGSSWGKQDGGSSWGKQD--G-GSSW- 1165
             +D G SS GK+D GGSSW K+D GG S    D GG  +G + GG   G +D  G GSS+ 
Sbjct:  1056 KDDGESSWGKKDDGGSSWGKKDEGGYSEQTFDRGGRGFGGRRGGGRRGGRDQFGRGSSFG 1115

Query:  1166 -SKEPDQQHRKNGGSSWGNRDG---GSSWSKQTDQQDNQEKPLESDXXXXXXXXXXXXXX 1221
              S++P    + +GGSSWG +DG   GSSW K+ D         + +              
Sbjct:  1116 NSEDPAPWSKPSGGSSWGKQDGDGGGSSWGKENDAGGGSSWGKQDNGVGSSWGKQNDGSG 1175

Query:  1222 XXXXXEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTD----WNKK 1267
                     +  G GS     ++ +GG    G+ W ++D G D    W K+
Sbjct:  1176 GGSSWGKQNDAGGGS--SWGKQDSGG---DGSSWGKQDGGGDSGSAWGKQ 1220

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006306 "DNA methylation" evidence=IMP

GO:0030422 "production of siRNA involved in RNA interference" evidence=IMP

TAIR\|locus:2040954 AT2G34210 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

POMBASE\|SPAC23C4.19 spt5 "transcription elongation factor Spt5" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-001207-1 supt5h "suppressor of Ty 5 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZI08 SUPT5H "Transcription elongation factor SPT5" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

SGD\|S000004470 SPT5 "Component of the universally conserved Spt4/5 complex (DSIF complex)" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0287661 spt5 "transcription initiation factor Spt5" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

MGI\|MGI:1202400 Supt5 "suppressor of Ty 5" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PTB2 E9PTB2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LA48 SUPT5H "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_VIII000253	hypothetical protein (1853 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1711
cd09888		86	cd09888, NGN_Euk, Eukaryotic N-Utilization Substan	2e-36
pfam03439		84	pfam03439, Spt5-NGN, Early transcription elongatio	3e-26
cd06081		38	cd06081, KOW_Spt5_1, KOW domain of Spt5, repeat 1	9e-16
PRK08559		153	PRK08559, nusG, transcription antitermination prot	2e-12
cd06084		43	cd06084, KOW_Spt5_4, KOW domain of Spt5, repeat 4	7e-12
TIGR00405		145	TIGR00405, L26e_arch, ribosomal protein L24p/L26e,	2e-09
cd09887		82	cd09887, NGN_Arch, Archaeal N-Utilization Substanc	2e-07
PTZ00146		293	PTZ00146, PTZ00146, fibrillarin; Provisional	8e-07
PTZ00146		293	PTZ00146, PTZ00146, fibrillarin; Provisional	3e-06
COG5164		607	COG5164, SPT5, Transcription elongation factor [Tr	7e-06
pfam11942		92	pfam11942, Spt5_N, Spt5 transcription elongation f	8e-06
PRK12678		672	PRK12678, PRK12678, transcription termination fact	1e-05
cd06085		52	cd06085, KOW_Spt5_5, KOW domain of Spt5, repeat 5	2e-05
PTZ00146		293	PTZ00146, PTZ00146, fibrillarin; Provisional	7e-05
PRK12678		672	PRK12678, PRK12678, transcription termination fact	1e-04
smart00738		106	smart00738, NGN, In Spt5p, this domain may confer	1e-04
cd08000		99	cd08000, NGN, N-Utilization Substance G (NusG) N-t	1e-04
PTZ00146		293	PTZ00146, PTZ00146, fibrillarin; Provisional	2e-04
PRK12678		672	PRK12678, PRK12678, transcription termination fact	7e-04
PRK12678		672	PRK12678, PRK12678, transcription termination fact	8e-04
COG0250		178	COG0250, NusG, Transcription antiterminator [Trans	0.004

>gnl\|CDD\|193577 cd09888, NGN_Euk, Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)	Back alignment and domain information

 Score =  132 bits (335), Expect = 2e-36
 Identities = 37/85 (43%), Positives = 56/85 (65%)

Query: 227 IWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEA 286
           +W VKC  G+ER+    LM+KF+DLQ  G+ + I S FA D +KG+I+IEA K+  + +A
Sbjct: 2   LWAVKCKPGKEREIVISLMRKFLDLQRTGNPLGIKSVFARDGLKGYIYIEARKEAHVKDA 61

Query: 287 CKGLSGIYYSRLAPVPKNEVSHLLS 311
            +GL G+Y + +  VP  E+  +LS
Sbjct: 62  IEGLRGVYLNTIKLVPIKEMPDVLS 86

The N-Utilization Substance G (NusG) protein and its eukaryotic homolog, Spt5, are involved in transcription elongation and termination. NusG contains an NGN domain at its N-terminus and Kyrpides Ouzounis and Woese (KOW) repeats at its C-terminus. Spt5 forms an Spt4-Spt5 complex that is an essential RNA polymerase II elongation factor. NusG was originally discovered as an N-dependent antitermination enhancing activity in Escherichia coli, and has a variety of functions such as its involvement in RNA polymerase elongation and Rho-termination in bacteria. Orthologs of the NusG gene exist in all bacteria, but their functions and requirements are different. Spt5-like is homologous to the Spt5 proteins present in all eukaryotes, which is unique as it encodes a protein with an additional long carboxy-terminal extension that contains WG/GW motifs. Spt5-like, or KTF1 (KOW domain-containing Transcription Factor 1), is a RNA-directed DNA methylation (RdDM) pathway effector in plants. Length = 86

>gnl\|CDD\|217558 pfam03439, Spt5-NGN, Early transcription elongation factor of RNA pol II, NGN section	Back alignment and domain information

>gnl\|CDD\|240505 cd06081, KOW_Spt5_1, KOW domain of Spt5, repeat 1	Back alignment and domain information

>gnl\|CDD\|181467 PRK08559, nusG, transcription antitermination protein NusG; Validated	Back alignment and domain information

>gnl\|CDD\|240508 cd06084, KOW_Spt5_4, KOW domain of Spt5, repeat 4	Back alignment and domain information

>gnl\|CDD\|129499 TIGR00405, L26e_arch, ribosomal protein L24p/L26e, archaeal	Back alignment and domain information

>gnl\|CDD\|193576 cd09887, NGN_Arch, Archaeal N-Utilization Substance G (NusG) N-terminal (NGN) domain	Back alignment and domain information

>gnl\|CDD\|240291 PTZ00146, PTZ00146, fibrillarin; Provisional	Back alignment and domain information

>gnl\|CDD\|240291 PTZ00146, PTZ00146, fibrillarin; Provisional	Back alignment and domain information

>gnl\|CDD\|227493 COG5164, SPT5, Transcription elongation factor [Transcription]	Back alignment and domain information

>gnl\|CDD\|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic N-terminal	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|240509 cd06085, KOW_Spt5_5, KOW domain of Spt5, repeat 5	Back alignment and domain information

>gnl\|CDD\|240291 PTZ00146, PTZ00146, fibrillarin; Provisional	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|197850 smart00738, NGN, In Spt5p, this domain may confer affinity for Spt4p	Back alignment and domain information

>gnl\|CDD\|193574 cd08000, NGN, N-Utilization Substance G (NusG) N-terminal (NGN) domain Superfamily	Back alignment and domain information

>gnl\|CDD\|240291 PTZ00146, PTZ00146, fibrillarin; Provisional	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|223328 COG0250, NusG, Transcription antiterminator [Transcription]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1711
KOG1999		1024	consensus RNA polymerase II transcription elongati	100.0
COG5164		607	SPT5 Transcription elongation factor [Transcriptio	100.0
PRK08559		153	nusG transcription antitermination protein NusG; V	99.91
PF03439		84	Spt5-NGN: Early transcription elongation factor of	99.86
TIGR00405		145	L26e_arch ribosomal protein L24p/L26e, archaeal. T	99.81
KOG1999		1024	consensus RNA polymerase II transcription elongati	99.8
COG0250		178	NusG Transcription antiterminator [Transcription]	99.73
PRK05609		181	nusG transcription antitermination protein NusG; V	99.57
TIGR01956		258	NusG_myco NusG family protein. This model represen	99.57
TIGR00922		172	nusG transcription termination/antitermination fac	99.52
PF11942		97	Spt5_N: Spt5 transcription elongation factor, acid	99.49
COG5164		607	SPT5 Transcription elongation factor [Transcriptio	99.47
PRK09014		162	rfaH transcriptional activator RfaH; Provisional	99.31
TIGR01955		159	RfaH transcriptional activator RfaH. This model re	99.28
smart00738		106	NGN In Spt5p, this domain may confer affinity for	99.19
PF02357		92	NusG: Transcription termination factor nusG; Inter	97.83
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	97.41
PF00467		32	KOW: KOW motif; InterPro: IPR005824 Ribosomes are	97.27
PF00467		32	KOW: KOW motif; InterPro: IPR005824 Ribosomes are	97.1
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	97.0
KOG3973		465	consensus Uncharacterized conserved glycine-rich p	96.83
TIGR00405		145	L26e_arch ribosomal protein L24p/L26e, archaeal. T	95.58
smart00739		28	KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i	95.36
PRK08559		153	nusG transcription antitermination protein NusG; V	95.1
KOG3262		215	consensus H/ACA small nucleolar RNP component GAR1	94.65
smart00739		28	KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i	94.55
CHL00141		83	rpl24 ribosomal protein L24; Validated	94.12
PRK01191		120	rpl24p 50S ribosomal protein L24P; Validated	94.08
PRK12281		76	rplX 50S ribosomal protein L24; Reviewed	94.04
TIGR01955		159	RfaH transcriptional activator RfaH. This model re	93.91
TIGR00922		172	nusG transcription termination/antitermination fac	93.66
PRK00004		105	rplX 50S ribosomal protein L24; Reviewed	93.65
PRK05609		181	nusG transcription antitermination protein NusG; V	93.1
CHL00141		83	rpl24 ribosomal protein L24; Validated	92.49
PRK09014		162	rfaH transcriptional activator RfaH; Provisional	92.16
KOG3262		215	consensus H/ACA small nucleolar RNP component GAR1	92.11
TIGR01079		104	rplX_bact ribosomal protein L24, bacterial/organel	91.96
PF00524		130	PPV_E1_N: E1 Protein, N terminal domain; InterPro:	91.86
PRK01191		120	rpl24p 50S ribosomal protein L24P; Validated	91.62
PRK12281		76	rplX 50S ribosomal protein L24; Reviewed	91.58
TIGR01080		114	rplX_A_E ribosomal protein L24p/L26e, archaeal/euk	91.38
TIGR01956		258	NusG_myco NusG family protein. This model represen	91.19
COG0250		178	NusG Transcription antiterminator [Transcription]	91.15
PTZ00194		143	60S ribosomal protein L26; Provisional	90.88
TIGR01080		114	rplX_A_E ribosomal protein L24p/L26e, archaeal/euk	90.06
PTZ00194		143	60S ribosomal protein L26; Provisional	89.99
COG0198		104	RplX Ribosomal protein L24 [Translation, ribosomal	89.81
PRK00004		105	rplX 50S ribosomal protein L24; Reviewed	89.62
PF11623		53	DUF3252: Protein of unknown function (DUF3252); In	85.99
TIGR01079		104	rplX_bact ribosomal protein L24, bacterial/organel	85.71
COG2933		358	Predicted SAM-dependent methyltransferase [General	82.83
KOG1708		236	consensus Mitochondrial/chloroplast ribosomal prot	81.59

>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]	Back alignment and domain information

Probab=100.00  E-value=1.6e-130  Score=1187.64  Aligned_cols=631  Identities=34%  Similarity=0.501  Sum_probs=489.6

Q ss_pred             CcccccccccccccccccccCCCCCchhhcCCCcCCC--CCCCCccchhhhhccCccccccccccCCCCCCCccccCCHH
Q 000294          107 HNRKRKNRSVLQFVEDAADVDYDDDDEEEVGNESDNS--GGFADDDFMEELFDAQPKVNNEMGQAHNLPFIPKEEEMDEE  184 (1711)
Q Consensus       107 r~rKRkrr~~n~FiDdEAEVDDDeEeEDEeeEe~e~~--~~Fi~dD~~~d~~e~~~~~~~d~r~~~~l~~r~~eed~DaE  184 (1711)
                      ..+|+|+.+...||+.|||||||+||+|+|+|++|+.  ..||. +..+++++++    .++|.|+.++ ++..+  .+|
T Consensus        55 ~~~~~k~~s~~gf~~~e~dvDdeveddd~~~edEed~~~~~~ie-~~e~~~~d~~----~~~R~~~~~~-~~~~~--~~e  126 (1024)
T KOG1999|consen   55 PDEKDKKESGGGFIDREADVDDEVEDDDDDEEDEEDIELHNDIE-ESEEDLPDER----GDRRLRRYWD-RQLNE--LEE  126 (1024)
T ss_pred             hhhhccccccccccccccccccccccccchhccCcchhhcccch-hccccccccc----ccccchhhhh-hhhhH--HHH
Confidence            3456677888899999999999988776666554321  12221 1111222211    1122222222 12222  677


Q ss_pred             HHHHHHHHHhccccchhhchhhHHHhhhcccccCCCCCCCCcEEEEEeccchHHHHHHHHHHHHHhhccCCCCCcEEEEE
Q 000294          185 EFDKMMEERYKSNKLIRYAEEDYEAKKMLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAF  264 (1711)
Q Consensus       185 elAe~lkERY~r~s~~~y~~d~~e~~~~VpQq~LLPSV~DPkLWaVKCk~GkEReVV~~LmrKii~lq~~g~~L~I~SVF  264 (1711)
                      ++|+.|+|||....  .|.+.++++.++|+||+|||+|+||+||+|||++|+||+||+|||+||++++++..||+|+|||
T Consensus       127 ~~~~r~aee~~~~~--~~~~~~~~~~d~I~Q~~LLPsvkDP~LW~VKC~iG~Er~~a~~LMrK~i~~~~t~~plqI~Sv~  204 (1024)
T KOG1999|consen  127 ELAKRYAEEYIEKY--GFEDGDDEDSDDIPQQALLPSVKDPNLWIVKCKIGREREVAFCLMRKFIELDKTDTPLQIKSVF  204 (1024)
T ss_pred             HHHHHHHHhhcccc--cccccchhcccchhHHhhCCCCCCCCeeEEEeccccHHHHHHHHHHHHHhhcccCCCceEEEEE
Confidence            77777777776532  1232333445889999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEeccchhHHHHhcCCCCeEeccccccCHHHHHHHhhcccccccccCCCEEEEecCcCCCCcEEEEEEeC
Q 000294          265 AVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNN  344 (1711)
Q Consensus       265 vpd~lKGYIYIEA~kq~dVk~AIkGI~gVy~~k~~pVPikEM~dLL~vkkk~~~Lk~GdwVRIKrGpYKGDLAQVveVde  344 (1711)
                      ++++|+|||||||++|.||++||++|++||.++|+||||+||++||+|.++.+.|++|.|||||+|+||||||||++|++
T Consensus       205 a~D~lkGyIYIEA~KqshV~~Ai~gv~niy~~~~~lVPikEM~dvLkV~K~~v~L~~gswVRiKrG~YKgDLAqVd~Vd~  284 (1024)
T KOG1999|consen  205 AKDHLKGYIYIEADKQSHVKEAIEGVRNIYANRILLVPIKEMPDVLKVVKKVVQLSEGSWVRIKRGKYKGDLAQVDDVDE  284 (1024)
T ss_pred             eccccceeEEEEechhHHHHHHHhhhhhheeccEEEEehhHhhhhhhhhhhhhccCccceEEEeccccccceeeeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEeccCchhhHHhhcCCCcccCCCCCCCCCCCChhhHhhhcCceeecccCCCCceEEecCCceeecceEEEEE
Q 000294          345 ARKRATVKLIPRIDLQALAAKFGGGVAMKKTDSPAPRLISPSELEEFRPLIQYRRDRDTGKVFENLDGMMLKDGYLYKKV  424 (1711)
Q Consensus       345 nk~eVtVKLIPRIDy~~l~~k~~gg~~kKK~~RPPqRLFn~~Eark~~~~~~~rrd~~tg~~f~i~~G~~y~DGFLyK~f  424 (1711)
                      ++++|+|||||||||+++..+++ ....++++||++|||+..|++.++++++.+++..++.+|+++.+++|+||||||.|
T Consensus       285 ~~n~v~lKlIPRIDyq~~~~~~~-~~~~~ka~~p~~R~~~~~~~~~~~ir~~~~~~~~~Gd~l~~~gn~~~~dGFLyK~v  363 (1024)
T KOG1999|consen  285 NRNRVRLKLIPRIDYQKLLGKLE-ETTDKKAFRPAPRRPNQKEFDEEAIRSEGRRDHSRGDYLEFEGNELFKDGFLYKDV  363 (1024)
T ss_pred             cCCEEEEEEeccccHHhhhcccc-ccchhhccCCcccCCCccccchhhhhhccccccccCceEEecCCceeccceeeeee
Confidence            99999999999999999998887 56677889999999999999999988888999999999988888899999999999


Q ss_pred             eccceEecCCCCCHHHHhhcCCCCCCccccHHHHHHHH-------------------hccc--cccEEEe----------
Q 000294          425 SIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLY-------------------GERK--KKRTTIV----------  473 (1711)
Q Consensus       425 kI~sL~t~dVnPTLEEL~kF~~~~~de~~DL~~La~~~-------------------ge~k--k~kii~v----------  473 (1711)
                      +|++|++++|+|||+||+||++..+  .+||+.++.++                   |+++  |+.|..|          
T Consensus       364 ~i~sI~t~gV~PT~dELekF~~~~e--~~Dl~~~st~~~~r~~~~~F~~GD~VeV~~Gel~glkG~ve~vdg~~vti~~~  441 (1024)
T KOG1999|consen  364 SISSIITDGVKPTLDELEKFNPSNE--EGDLEWVSTLKSNRKKKHLFSPGDAVEVIVGELKGLKGKVESVDGTIVTIMSK  441 (1024)
T ss_pred             ecceeeecCcccCHHHHHhhcCCCc--cccceeeeeeccccccccccCCCCeEEEeeeeeccceeEEEeccCceEEEeec
Confidence            9999999999999999999998744  78888765221                   1111  1111111          


Q ss_pred             ---------------------------ecCCCcc-----------------------------------cccCCCCcCcc
Q 000294          474 ---------------------------GKGGDKG-----------------------------------EGSSGSSLENS  491 (1711)
Q Consensus       474 ---------------------------~kGg~kg-----------------------------------E~ssG~~s~G~  491 (1711)
                                                 +.|.+++                                   |+.+++..+++
T Consensus       442 ~e~l~~pl~~~~~eLrKyF~~GDhVKVi~G~~eG~tGlVvrVe~~~vi~~Sd~t~eel~Vf~~dlq~c~ev~~gv~~~ge  521 (1024)
T KOG1999|consen  442 HEDLKGPLEVPASELRKYFEPGDHVKVIAGRYEGDTGLVVRVEQGDVILLSDLTMEELKVFARDLQLCSEVTLGVEKSGE  521 (1024)
T ss_pred             cccCCCccccchHhhhhhccCCCeEEEEeccccCCcceEEEEeCCeEEEEecCccceeeEEehhcccchheeeccccccc
Confidence                                       1122222                                   34566778899


Q ss_pred             cccCceEEEcCCceEEEEEEeccceEEEccCCCCCCceEEEecccccCCCCCCcccccccCCCcccCCCeEEEecCCCCC
Q 000294          492 FELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKD  571 (1711)
Q Consensus       492 FeLgDLVQLD~~TVGVIVrVEkDe~fkVLd~~gd~~~VvtVk~~~I~~K~~~rr~vAtD~~gk~I~vGD~VKVIdGp~kG  571 (1711)
                      |||||||||+.++|||||++++ +.|+||++++   .|++|++++|..|+..++++|+|+++|+|+++|+|+||.||+++
T Consensus       522 ~e~hdlVqLd~~~vgvI~rle~-e~~~vl~~~g---~v~~i~~~~i~~kk~~r~~~~~D~~~n~I~~kD~Vkvi~Gp~~g  597 (1024)
T KOG1999|consen  522 YELHDLVQLDNQNVGVIVRLER-ETFQVLGMNG---KVVTIRKSSITKKKDNRKAVAVDRNGNEIRVKDTVKVIGGPSKG  597 (1024)
T ss_pred             ccccceeecCCCcEEEEEEecc-hheeeecCcC---ceEEEeechhhhhhhhhhheeecccCCeecccceEEEecCCCCC
Confidence            9999999999999999999999 5999999885   79999999999998888899999999999999999999999999


Q ss_pred             ceEEEEEEECCEEEEEeCcceeeccEEEEeCCceeecccccccCCCCCCCCCCCCCC-CCCCCCCCCCCcchhh--hccC
Q 000294          572 RQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACEGKGGGSGASGFEEF-PSSPKSPLSPKRSWQA--REQN  648 (1711)
Q Consensus       572 RqG~VlHIyRs~VFL~Sr~~tENgGIFVvRarnv~tv~~~~~~~Kgg~~~~~~f~dl-~~sp~~~lsp~rp~~~--~~~~  648 (1711)
                      |+|.|+||||.+||||+++++||+||||||++||++++....    ..+.+...++| +|+|.-.++|+.|...  ....
T Consensus       598 ~~G~v~~i~r~~~F~h~r~~~En~Gv~vck~k~~~~~g~~~s----t~~~~~~~~~l~~msP~r~~sp~~~~~~~ga~g~  673 (1024)
T KOG1999|consen  598 REGEVLHIYRPFVFLHSRKNLENGGVFVCKEKNLILAGGKKS----TNSLAFNKGALAPMSPGRIQSPMGPSGGPGAFGG  673 (1024)
T ss_pred             ccCccceeecceeeeeehhhcccCCeEEEecCCceeccccCc----ccchhhcccccCCCCcccccCCcCCCCCCCCcCc
Confidence            999999999999999999999999999999999998764211    01111111112 2333212333333211  1111


Q ss_pred             ccccCCCCCCccccCCEEEEccCCCCCceeEEEEEeCCeEEEEecCCceEEEEeCCccccccCC--c--cc---------
Q 000294          649 TEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGK--S--FI---------  715 (1711)
Q Consensus       649 ~~~gRGgRd~d~lIGKTVkIrkGPYKGylGiVKDaTdt~ARVELHSk~KtITVdK~~Ls~v~~~--~--~~---------  715 (1711)
                      +..+|++++++.|||+||+|+.||||||+|||||+|+++||||||++|++|+|++.+|.++...  .  ++         
T Consensus       674 ~gggrGg~rd~~l~GktVrI~~Gp~KG~~GivkD~~~~~arVELhs~~~ti~vd~~~~~~v~~~~~~g~~~sYg~~~~~~  753 (1024)
T KOG1999|consen  674 HGGGRGGNRDDSLLGKTVRIRLGPKKGYLGIVKDVNGDTARVELHSKCVTIKVDRLKRKIVGSTRDGGETSSYGERTPGY  753 (1024)
T ss_pred             CccCccCcCcchhcCcEEEEecCCcccccceeEeccCCeeEEEEEeccEEEEechhhceEEeeccCCCCccccccccccc
Confidence            2224444333689999999999999999999999999999999999999999999999976422  1  11         


Q ss_pred             ---ccccCCCCCCCcc-----CCC---CCCC-CCCCCCCCCCcccCCCCCCCCCC
Q 000294          716 ---TSTSDDQGSASFK-----PFD---PLGA-GGGSGDWMSAATTSAEGDRWNAG  758 (1711)
Q Consensus       716 ---~s~~~d~~s~~~~-----p~~---~~g~-~~~~g~~~~g~gt~~~~~~wn~G  758 (1711)
                         +.+.+++++.+..     |+-   +++. .++..+++.|++||+++.+|++.
T Consensus       754 g~~~~~~~~~Gs~tp~~~s~tpl~~~s~tp~~~~~~Tp~~dG~rTP~r~~aW~~~  808 (1024)
T KOG1999|consen  754 GRVTPARYGMGSSTPMYGSNTPLWGGSRTPARDGGATPSHDGSRTPARGRAWNPY  808 (1024)
T ss_pred             cccCccccCCCCcCccCCCCCCCCCcccCccccCCCCcCCCCCcCCCCCCCcCCC
Confidence               1112233332111     111   1111 24555666788888888888865

>COG5164 SPT5 Transcription elongation factor [Transcription]	Back alignment and domain information

>PRK08559 nusG transcription antitermination protein NusG; Validated	Back alignment and domain information

>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain	Back alignment and domain information

>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal	Back alignment and domain information

>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]	Back alignment and domain information

>COG0250 NusG Transcription antiterminator [Transcription]	Back alignment and domain information

>PRK05609 nusG transcription antitermination protein NusG; Validated	Back alignment and domain information

>TIGR01956 NusG_myco NusG family protein	Back alignment and domain information

>TIGR00922 nusG transcription termination/antitermination factor NusG	Back alignment and domain information

>PF11942 Spt5_N: Spt5 transcription elongation factor, acidic N-terminal; InterPro: IPR022581 This is the very acidic N-terminal domain of the early transcription elongation factor Spt5 []	Back alignment and domain information

>COG5164 SPT5 Transcription elongation factor [Transcription]	Back alignment and domain information

>PRK09014 rfaH transcriptional activator RfaH; Provisional	Back alignment and domain information

>TIGR01955 RfaH transcriptional activator RfaH	Back alignment and domain information

>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p	Back alignment and domain information

>PF02357 NusG: Transcription termination factor nusG; InterPro: IPR006645 This sequence is identified by the NGN domain and is represented by the bacterial antitermination protein NusG	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]	Back alignment and domain information

>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal	Back alignment and domain information

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif	Back alignment and domain information

>PRK08559 nusG transcription antitermination protein NusG; Validated	Back alignment and domain information

>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif	Back alignment and domain information

>CHL00141 rpl24 ribosomal protein L24; Validated	Back alignment and domain information

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated	Back alignment and domain information

>PRK12281 rplX 50S ribosomal protein L24; Reviewed	Back alignment and domain information

>TIGR01955 RfaH transcriptional activator RfaH	Back alignment and domain information

>TIGR00922 nusG transcription termination/antitermination factor NusG	Back alignment and domain information

>PRK00004 rplX 50S ribosomal protein L24; Reviewed	Back alignment and domain information

>PRK05609 nusG transcription antitermination protein NusG; Validated	Back alignment and domain information

>CHL00141 rpl24 ribosomal protein L24; Validated	Back alignment and domain information

>PRK09014 rfaH transcriptional activator RfaH; Provisional	Back alignment and domain information

>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle	Back alignment and domain information

>PF00524 PPV_E1_N: E1 Protein, N terminal domain; InterPro: IPR014000 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species	Back alignment and domain information

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated	Back alignment and domain information

>PRK12281 rplX 50S ribosomal protein L24; Reviewed	Back alignment and domain information

>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic	Back alignment and domain information

>TIGR01956 NusG_myco NusG family protein	Back alignment and domain information

>COG0250 NusG Transcription antiterminator [Transcription]	Back alignment and domain information

>PTZ00194 60S ribosomal protein L26; Provisional	Back alignment and domain information

>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic	Back alignment and domain information

>PTZ00194 60S ribosomal protein L26; Provisional	Back alignment and domain information

>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK00004 rplX 50S ribosomal protein L24; Reviewed	Back alignment and domain information

>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function	Back alignment and domain information

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle	Back alignment and domain information

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]	Back alignment and domain information

>KOG1708 consensus Mitochondrial/chloroplast ribosomal protein L24 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1711
3h7h_B		106	Crystal Structure Of The Human Transcription Elonga		1e-11
2exu_A		200	Crystal Structure Of Saccharomyces Cerevisiae Trans		9e-08
3p8b_B		152	X-Ray Crystal Structure Of Pyrococcus Furiosus Tran		2e-05
3qqc_D		163	Crystal Structure Of Archaeal Spt45 BOUND TO THE RN		2e-05

>pdb|3H7H|B Chain B, Crystal Structure Of The Human Transcription Elongation Factor Dsif, Hspt4HSPT5 (176-273) Length = 106

Back alignment and structure

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 224 DPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDI 283
           DP +W VKC  G ER +A  LM+KF+  Q   + +QI S  A +H+KG+I++EA KQ  +
Sbjct: 5   DPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHV 64
Query: 284 NEACKGLSGIY--YSRLAPVPKNEVSHLL 310
            +A +G+  +   Y     VP  E++ +L
Sbjct: 65  KQAIEGVGNLRLGYWNQQMVPIKEMTDVL 93

PyMOL of 3h7h

>pdb|2EXU|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Transcription Elongation Factors Spt4-Spt5ngn Domain Length = 200

Back alignment and structure

>pdb|3P8B|B Chain B, X-Ray Crystal Structure Of Pyrococcus Furiosus Transcription Elongation Factor Spt45 Length = 152

Back alignment and structure

>pdb|3QQC|D Chain D, Crystal Structure Of Archaeal Spt45 BOUND TO THE RNAP CLAMP DOMAIN Length = 163

Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1711
d1m1ha2		101	N-utilization substance G protein NusG, N-terminal	99.24
d1nz8a_		119	N-utilization substance G protein NusG, N-terminal	99.16
d2do3a1		62	Transcription elongation factor SPT5 {Human (Homo	98.38
d1nz9a_		58	N-utilization substance G protein NusG, C-terminal	97.28
d1nppa2		58	N-utilization substance G protein NusG, C-terminal	97.27
d1nppa2		58	N-utilization substance G protein NusG, C-terminal	96.22
d1nz9a_		58	N-utilization substance G protein NusG, C-terminal	95.88
d2do3a1		62	Transcription elongation factor SPT5 {Human (Homo	95.53
d1vqot1		119	Ribosomal proteins L24 (L24p) {Archaeon Haloarcula	93.57
d1vqot1		119	Ribosomal proteins L24 (L24p) {Archaeon Haloarcula	92.92
d2zjrr1		110	Ribosomal proteins L24 (L24p) {Deinococcus radiodu	92.79
d2gycs1		99	Ribosomal proteins L24 (L24p) {Escherichia coli [T	89.21
d2zjrr1		110	Ribosomal proteins L24 (L24p) {Deinococcus radiodu	87.43
d2j01y1		101	Ribosomal proteins L24 (L24p) {Thermus thermophilu	83.37

>d1m1ha2 d.58.42.1 (A:5-50,A:132-186) N-utilization substance G protein NusG, N-terminal domain {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: N-utilization substance G protein NusG, N-terminal domain
family: N-utilization substance G protein NusG, N-terminal domain
domain: N-utilization substance G protein NusG, N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.24  E-value=4e-11  Score=90.06  Aligned_cols=86  Identities=15%  Similarity=0.242  Sum_probs=76.0

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE--CCCCCEEEEEECCCHHHHHHHCCCCCEEE-----C
Q ss_conf             9939999921623799999999999963058998758899981--79985799995050149998518998672-----1
Q 000294          224 DPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAV--DHIKGFIFIEADKQCDINEACKGLSGIYY-----S  296 (1711)
Q Consensus       224 DPkLWvVKCK~GkEReVV~~LmkKii~lq~~g~~L~I~SVFvp--d~lKGYIYIEA~kq~dV~eAI~GI~gVy~-----~  296 (1711)
                      +-+||+|+|++|+|+.|+..|++++....   ....|..|++|  +.|||||||++.+.++++++|+.+++|..     .
T Consensus         6 ~kkWYvv~t~Sg~E~kV~~~l~~~~~~~~---l~~~i~~v~VP~~klfPGYvfV~~~~~~~~~~~Ir~t~gV~~fvg~~~   82 (101)
T d1m1ha2           6 EKKWYALQVEPGKENEAKENLLKVLELEG---LKDLVDEVIVPANKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGG   82 (101)
T ss_dssp             CCEEEEEEECTTCHHHHHHHHHHHHHHTT---CGGGEEEEECSSCSSSTTEEEEEECCCHHHHHHHHTSTTEEEECEETT
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHCC---CHHHHHHHHCCCHHCCCCEEEEEEEECCHHHHHHHCCCCEEEECCCCC
T ss_conf             58679999378956999999999998718---056668786522103787799999747467899854998788268898


Q ss_pred             CCCCCCHHHHHHHHHC
Q ss_conf             0012699899997520
Q 000294          297 RLAPVPKNEVSHLLSA  312 (1711)
Q Consensus       297 k~~lVPikEM~dLLkv  312 (1711)
                      +|.||+.+||..+|..
T Consensus        83 ~P~pl~~~Ev~~il~~   98 (101)
T d1m1ha2          83 KPVPLKEEEVQNILNQ   98 (101)
T ss_dssp             EECEECHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
T ss_conf             4176999999999998

PyMOL of d1m1ha2

>d1nz8a_ d.58.42.1 (A:) N-utilization substance G protein NusG, N-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}	Back information, alignment and structure

>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}	Back information, alignment and structure

>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure