Citrus Sinensis ID: 000294


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710-
MIRTRQLGRNSSAQRTKTNMPTSTFCPWHAVHTQSVSNNQREGNQTAVFSKSRLSDDFLSFNFSAKIPPRIVCDPEMATDKGKAVAVGKDAYGKRKRNDGSSGVKPHNRKRKNRSVLQFVEDAADVDYDDDDEEEVGNESDNSGGFADDDFMEELFDAQPKVNNEMGQAHNLPFIPKEEEMDEEEFDKMMEERYKSNKLIRYAEEDYEAKKMLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATVKLIPRIDLQALAAKFGGGVAMKKTDSPAPRLISPSELEEFRPLIQYRRDRDTGKVFENLDGMMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVGKGGDKGEGSSGSSLENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACEGKGGGSGASGFEEFPSSPKSPLSPKRSWQAREQNTEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSASFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGKNKDACDNQANWKKSDSWDKGKKIIGNSTSSWGDKTAEKNEPDSWGKGKDGSSGSKSDWNSSALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGSSWSKEPDQQHRKNGGSSWGNRDGGSSWSKQTDQQDNQEKPLESDGGRGSGGRWGQGGGQGGGQEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCNWNSGSSDGDGNNGSGGWGKKSNWNSGSSGAGESKDTDWNKKSNLNCGSSDGDGNNSSGWDKKGNWNAGSSGDGESKDTDWNKKCNWNSGSNDGDGNNGSGWGKKSNWNSGSNVAGESNDSNWAKKGNWNSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWNSRSEDQPEPFNNRGSGNFRGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGGFGGRGRGRRDQGGGWNNNDSGDYKSFDSSQGVKNGGEWSRSNDGAGSNDSSIANDVKGPNDQVVGRNKGSNGSAQSGGWGNQGSGWSSGTGSGNKGSNDSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDSGNRGSNSDQPKSWNQSSVATDGGRSKDAGEGSSRGWGKTAGSSWEKGNDGSGKGGW
ccccccccccccccccccccccccccccccEEEccccccccccccEEEEEccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHcccccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccEEEEEEccHHHHHHHHHccccccccccEEEcHHHHHHHHcccccccccccccEEEEEccccccccEEEEEEEccccEEEEEEEEccccHHHHHHcccccccccccccccccccHHHHHHccccEEEccccccccEEEEccccEEEccEEEEEEEccEEEEccccccHHHHHcccccccccccHHHHHHHHHHccccccEEEEcccccccEEcccccccccccEEEEEEEccccEEEEEEEEcccEEEEccccccccEEEEEEcccccccccccccccccccccEEccccEEEEEcccccccEEEEEEEEccEEEEEccccccccEEEEEEccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEEEccEEEEEEcccccEEEEcccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccEcccccccccccccccccccccccccEEEEEEccccccccccEEEEEcccccccccEEEccccccccEEEcccHccccccEEEcccccccccEccccccccccccHHcccccHHHHHHHHcccccccHHHHHccccHHccccccccccHHHHHcccHHHccccccccccccccccHcccHHHHHHHHHHHHHcccHHHHccccHHccccccHHHcccccccccEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEccHHHHHHHHHcccccEcccEEEEEHHHcHHHEEEEccccccccccEEEEEcccccccEEEEEEEcccccEEEEEEEEEccccHHHHHccccHcHccccccccccccHHHHHHHcccEEEccccccccEEEEEcccEEEccEEEEEEEEEEEEEccccccHHHHHHHccccccccccHHHHHHHHHHccccccEEEEccccEEEEEEcccccccEEcccEEEEccccEEEEEEEEccEEEEEEEcccccccEEEEcHHHHHccccccccEEHHccccEEEcccEEEEEEccccccEEEEEEEEccEEEEEEccccccccEEEEEcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccEcccEEEEEEccccccEEEEEEccccEEEEEEEcccEEEEEEccHEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mirtrqlgrnssaqrtktnmptstfcpwhavhtqsvsnnqregnqtavfsksrlsddflsfnfsakipprivcdpematdkgkavavgkdaygkrkrndgssgvkphnrkrknrsVLQFVEdaadvdyddddeeevgnesdnsggfaddDFMEELFDAQpkvnnemgqahnlpfipkeeemdeEEFDKMMEERYKSNKLIRYAEEDYEAKKMLEReyhmpcpedptiwkvkcmagreRQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGlsgiyysrlapvpknEVSHLLSAQIKrnevsegtwayvkngkykgdLAQVVYVNNARKRATVKLIPRIDLQALAAKFgggvamkktdspaprlispseleefrPLIQyrrdrdtgkvfenldgmmlkdgylykkvsidslscwgvvpseeellkfqpsesnesaDLEWLSQLYGERkkkrttivgkggdkgegssgsslensFELYELVCFGRKDFGLIVGMEKDDHYKIlkegsegpavvTVERrtlkngpfdmkftALDQSMKVIslndtarvsegpskdrqGIVKKIYRGILFiydenetenggyfcsksqhcektkveacegkgggsgasgfeefpsspksplspkrswQAREQNtefkrgdrdgmfAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGehlaevrgksfitstsddqgsasfkpfdplgagggsgdwmsaattsaegdrwnaggasagrsswpsfpvvgtslhaesnpanafgsgdngankdeedsawgskVNAIQNSSWGlaaaegknedcWNKAAVKNIesnngayggwgkedagsslqdsqdnwgknkdacdnqanwkksdswdkgkkiignstsswgdktaeknepdswgkgkdgssgsksdwnssalatenptvswgnasggwtqqkggnmdersgwkkddsgnqdqrsgwnkpktfgadvgsswnkqdgicssdvqdggsswakqdggsswgkknggslmgkqdggsswgkqdggsslgkqdggsswgkqdgrsslakqdggsswgkqdrgsswgkqdegsswskrdggsswgkqdggsslakqdggsswgkqdggsslgkqdggsswskqdggsswgkqdggsswgkqdggsswgkqdggsswskepdqqhrknggsswgnrdggsswskqtdqqdnqekplesdggrgsggrwgqgggqgggqevsdqygrgsfdqgsekgtggmgdqgngwnrrdkgtdwnkkcnwnsgssdgdgnngsggwgkksnwnsgssgageskdtdwnkksnlncgssdgdgnnssgwdkkgnwnagssgdgeskdtdwnkkcnwnsgsndgdgnngsgwgkksnwnsgsnvagesndsnwakkgnwnsgsddanqesswgkkqgnwnsgsrdghqesswgkksdwnsrsedqpepfnnrgsgnfrgrggfrgrgdsdrggfggrgrtnrggyggrgrfdregfggrggsdrggfggrgssdrggfggrgrgrrdqgggwnnndsgdyksfdssqgvknggewsrsndgagsndssiandvkgpndqvvgrnkgsngsaqsggwgnqgsgwssgtgsgnkgsndsnisnkgpndqgggwnkgsggsaqsgawgnqgsgwnggtdsgnrgsnsdqpkswnqssvatdggrskdagegssrgwgktagsswekgndgsgkggw
mirtrqlgrnssaqrtktnmptstfcPWHAVHTQSVSNNQREGNQTAVFSKSRLSDDFLSFNfsakipprivcdpematdkgkavavgkdaygkrkrndgssgvkphnrkrknrsvlqfvedaadvdyddddEEEVGNESDNSGGFADDDFMEELFDAQPKVNnemgqahnlpfipkeeeMDEEEFDKMMEERYKSNKLIRYAEEDYEAKKMLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAyvkngkykgdLAQVVYVNNARkratvklipridLQALAAKFGGGVAMKKtdspaprlispseleefrpliqyrrdrdtgkvfenLDGMMLKDGYLYKKVSIDSLSCWGVVPSEEELLkfqpsesnesadLEWLSQLygerkkkrttivgkggdkgegssgssleNSFELYELVCFGRKDFGLIVGMEKDDHYKIlkegsegpavvtvERRTLKNGPFDMKFTALDQSMKVISLNdtarvsegpskdrqgivKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACEGKGGGsgasgfeefpsspksplspkrswQAREQNtefkrgdrdgmfaVGQTlrirvgplKGYLCRVLAVRYSDvtvkldsqqkiltvkgehlaevrgksfitstsddqgsaSFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGknkdacdnqanwkksdswdkgkkiignstsswgdktaeknepdswgkgkdgssgskSDWNSSALAtenptvswgnasggwtqqkggnMDERSGWKKddsgnqdqrsgwnkPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSslgkqdggsswgkqdgrsslakqdggsswgkqdrgsswgkqdegsswskrdggsswgkqdggsslakqdggsswgkqdGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGgsswskepdqqhrknggsswgnrdGGSSWSKQTDQQDNQEKplesdggrgsggrWGQGGGQGGGQEVSDQYGRGSFDqgsekgtggmgdqgngwnrRDKGTDWNKKcnwnsgssdgdgnngsgGWGKKSNWNSGSSGAGESKDTDWNKKSNLNCGSSDGDGNNSSGWDKKGNWNAGSSGDGESKDTDWNKKCNWnsgsndgdgnngsGWGKKSNWNSGSNVAGESNDSNWAKKGNWNSGsddanqesswgkkqgnwnsgsrdghqesswgkksdwnsrsedqpepfnnrgsgnfrgrggfrgrgdsdrggfggrgrtnrggyggrgrfdregfggrggsdrggfggrgssdrggfggrgrgrrdqgggwnnndsgdyksFDSSQGVKNGGEWSRSNDGAGSNDSSIANDVKGPNDQVVGRNKgsngsaqsggwgnqGSGWSSGTGSGNKGSNDSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDSGNrgsnsdqpkswnqssvatdggrskdagegssrgwgktagsswekgndgsgkggw
MIRTRQLGRNSSAQRTKTNMPTSTFCPWHAVHTQSVSNNQREGNQTAVFSKSRLSDDFLSFNFSAKIPPRIVCDPEMATDKGKAVAVGKDAYGKRKRNDGSSGVKPHNRKRKNRSVLQFVedaadvdyddddeeevgnesdnsgGFADDDFMEELFDAQPKVNNEMGQAHNLPFIPkeeemdeeefdkmmeeRYKSNKLIRYAEEDYEAKKMLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATVKLIPRIDLQALAAKFGGGVAMKKTDSPAPRLISPSELEEFRPLIQYRRDRDTGKVFENLDGMMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVgkggdkgegssgssLENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVeacegkgggsgasgfeefpsspksplspkRSWQAREQNTEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSASFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGKNKDACDNQANwkksdswdkgkkiiGNSTSSWGDKTAEKNEPdswgkgkdgssgsksdwnssALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDggsswgkknggsLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGSSWSKEPDQQHRKNGGSSWGNRDGGSSWSKQTDQQDNQEKPLESDggrgsggrwgqgggqgggqEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCnwnsgssdgdgnngsggwgkksnwnsgssgAGESKDTDWNKKsnlncgssdgdgnnssgWDKKGNWNAGSSGDGESKDTDWNKKCnwnsgsndgdgnngsgwgkksnwnsgsnVAGESNDSNWAKKGNWNSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWNSRSEDQPEPFnnrgsgnfrgrggfrgrgdsdrggfggrgrtnrggyggrgrfdregfggrggsdrggfggrgssdrggfggrgrgrrdqgggwnnndSGDYKSFDSSQGVKNGGEWSRSNDGAGSNDSSIANDVKGPNDQVVGRNKgsngsaqsggwgnqgsgwssgtgsgnkgsndsnisnkgPNDQgggwnkgsggsaqsgawgnqgsgwnggTDSGNRGSNSDQPKSWNQSSVATDGGRSKDAGEGSSRGWGKTAGSSWEKGNDGSGKGGW
************************FCPWHAVH***********************DDFLSFNFSAKIPPRIVCD*****************************************************************************************************************************IRYA***Y****MLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATVKLIPRIDLQALAAKFGGGVA*******************FRPLIQYRRDRDTGKVFENLDGMMLKDGYLYKKVSIDSLSCWGVVPS*******************WL********************************SFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVI*****************GIVKKIYRGILFIYDENETENGGYFCSK********************************************************GMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVR***************************************************************************************************I**SSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGW*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
*********************TSTFCPWHAV*****************FSKSRLSDDFLSFNFSA********************************************************DAADVDYDDDDEEEVGNES**S******************************************FDKMMEERY*********************EYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATVKLIPRIDL**********************LISPSELEEFR*******DRDTGKVFENLDGMMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPS*********************************************ELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCE*******************************************************VGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVK*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
*******************MPTSTFCPWHAVHTQSVSNNQREGNQTAVFSKSRLSDDFLSFNFSAKIPPRIVCDPEMATDKGKAVAVGKDAYGK****************RKNRSVLQFVEDAADVDY*************NSGGFADDDFMEELFDAQPKVNNEMGQAHNLPFIPKEEEMDEEEFDKMMEERYKSNKLIRYAEEDYEAKKMLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATVKLIPRIDLQALAAKFGGGVAMKKTDSPAPRLISPSELEEFRPLIQYRRDRDTGKVFENLDGMMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVGKG***********LENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKV**************************************TEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFI********SASFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKE***************NKDACDNQANWKKSDSWDKGKKIIGNSTSS********************************LATENPTVSWGNASGGWTQ************************GWNKPKTFGADVGSSWNKQDGICSSD******************KKNGGSL****************************************************************************************************************************************************************************************************************SDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCNWNSGSSDGDGNNGSGGWGKKSNW*************DWNKKSNLNCGSSDGDGNNSSGWDKKGNWNA***********DWNKKCNWNSGSNDGDGNNGSGWGKKSNWNSGSNVAGESNDSNWAKKGNWNS***********************************************FNNRGSGNFRGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGGFGGRGRGRRDQGGGWNNNDSGDYKSF***********************SSIANDVKGPNDQVVGRN*******************************DSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDS********************************************************
*********************TSTFCPWHAVHTQSVSNNQ***NQTAVFSKSRLSDDFLSFNFSAKIPPRIVCDPEMATDK******************************************************************DDDF*EELFDA***********************DEEEFDKMMEERYKSNK**********AKKMLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATVKLIPRIDLQALAAKF********TDSPAPRLISPSELEEFRPLIQYRRDRDTGKVFENLDGMMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVGKGGDKGEGSSGSSLENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACEG******************************************GMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSASFKPFDPLGAGGGSGD**SAATTS*EGDRWNAGGAS*****WPSF*********************NGA**DEEDSAWGSKVNAI*N*SWGLAAAEGKNED******V**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
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SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIRTRQLGRNSSAQRTKTNMPTSTFCPWHAVHTQSVSNNQREGNQTAVFSKSRLSDDFLSFNFSAKIPPRIVCDPEMATDKGKAVAVGKDAYGKRKRNDGSSGVKPHNRKRKNRSVLQFVEDAADVDYDDDDEEEVGNESDNSGGFADDDFMEELFDAQPKVNNEMGQAHNLPFIPKEEEMDEEEFDKMMEERYKSNKLIRYAEEDYEAKKMLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATVKLIPRIDLQALAAKFGGGVAMKKTDSPAPRLISPSELEEFRPLIQYRRDRDTGKVFENLDGMMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVGKGGDKGEGSSGSSLENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACEGKGGGSGASGFEEFPSSPKSPLSPKRSWQAREQNTEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSASFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGKNKDACDNQANWKKSDSWDKGKKIIGNSTSSWGDKTAEKNEPDSWGKGKDGSSGSKSDWNSSALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGSSWSKEPDQQHRKNGGSSWGNRDGGSSWSKQTDQQDNQEKPLESDGGRGSGGRWGQGGGQGGGQEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCNWNSGSSDGDGNNGSGGWGKKSNWNSGSSGAGESKDTDWNKKSNLNCGSSDGDGNNSSGWDKKGNWNAGSSGDGESKDTDWNKKCNWNSGSNDGDGNNGSGWGKKSNWNSGSNVAGESNDSNWAKKGNWNSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWNSRSEDQPEPFNNRGSGNFRGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGGFGGRGRGRRDQGGGWNNNDSGDYKSFDSSQGVKNGGEWSRSNDGAGSNDSSIANDVKGPNDQVVGRNKGSNGSAQSGGWGNQGSGWSSGTGSGNKGSNDSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDSGNRGSNSDQPKSWNQSSVATDGGRSKDAGEGSSRGWGKTAGSSWEKGNDGSGKGGW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1711 2.2.26 [Sep-21-2011]
Q9STN31041 Putative transcription el no no 0.167 0.274 0.449 8e-64
O80770989 Putative transcription el no no 0.165 0.286 0.436 1e-60
O13936990 Transcription elongation yes no 0.136 0.236 0.334 6e-33
Q4PIC41057 Transcription elongation N/A no 0.164 0.266 0.325 1e-31
Q6FRZ51010 Transcription elongation yes no 0.156 0.265 0.323 2e-29
P276921063 Transcription elongation yes no 0.171 0.276 0.304 2e-28
Q2UGU31026 Transcription elongation yes no 0.191 0.318 0.292 2e-27
Q9DDT51084 Transcription elongation yes no 0.146 0.231 0.300 3e-27
Q4WP961058 Transcription elongation yes no 0.144 0.233 0.310 2e-26
Q5ZI081079 Transcription elongation yes no 0.137 0.217 0.302 4e-26
>sp|Q9STN3|SPT51_ARATH Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2 Back     alignment and function desciption
 Score =  246 bits (629), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 134/298 (44%), Positives = 192/298 (64%), Gaps = 12/298 (4%)

Query: 174 FIPKEE-EMDEEEFDKMMEERYKSNKLIRYAEEDYEAKKMLEREYHMPCPEDPTIWKVKC 232
           F+P++E + D E+ ++ ++ER+ S    R+ EE  E    +E++  +P   DP +W VKC
Sbjct: 134 FLPRDENDEDVEDLERRIQERFSS----RHHEEYDEEATEVEQQALLPSVRDPKLWMVKC 189

Query: 233 MAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSG 292
             GRER+ A CLMQKF+D    G+ +QI S  A+DH+K FI++EADK+  + EA KG+  
Sbjct: 190 AIGREREVAVCLMQKFIDR---GADLQIRSVVALDHLKNFIYVEADKEAHVKEAIKGMRN 246

Query: 293 IYYS-RLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATV 351
           IY + ++  VP  E++ +LS + K  ++S  TW  +K G YKGDLA+VV V+N R+R TV
Sbjct: 247 IYANQKILLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTV 306

Query: 352 KLIPRIDLQALAAKFGG-GVAMKKTDSPAPRLISPSELEEFRPLIQYRRDRDTGKVFENL 410
           KLIPRIDLQALA+K  G  V+ KK   P PR ++  E  E    ++ RRD  TG  FEN+
Sbjct: 307 KLIPRIDLQALASKLDGREVSKKKAFVPPPRFMNIDEARELHIRVERRRDHMTGDYFENI 366

Query: 411 DGMMLKDGYLYKKVSIDSLSCWGVVPSEEELLKF-QPSESNESADLEWLSQLYGERKK 467
            GM+ KDG+ YK+VS+ S++   V P+ +EL KF +PSE+ E  D   LS L+  RKK
Sbjct: 367 GGMLFKDGFHYKQVSLKSITVQNVTPTFDELEKFNKPSENGE-GDFGGLSTLFANRKK 423




May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex.
Arabidopsis thaliana (taxid: 3702)
>sp|O80770|SPT52_ARATH Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=2 Back     alignment and function description
>sp|O13936|SPT5_SCHPO Transcription elongation factor spt5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt5 PE=1 SV=1 Back     alignment and function description
>sp|Q4PIC4|SPT5_USTMA Transcription elongation factor SPT5 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SPT5 PE=3 SV=1 Back     alignment and function description
>sp|Q6FRZ5|SPT5_CANGA Transcription elongation factor SPT5 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SPT5 PE=3 SV=1 Back     alignment and function description
>sp|P27692|SPT5_YEAST Transcription elongation factor SPT5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPT5 PE=1 SV=1 Back     alignment and function description
>sp|Q2UGU3|SPT5_ASPOR Transcription elongation factor spt5 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=spt5 PE=3 SV=1 Back     alignment and function description
>sp|Q9DDT5|SPT5H_DANRE Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1 SV=1 Back     alignment and function description
>sp|Q4WP96|SPT5_ASPFU Transcription elongation factor spt5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=spt5 PE=3 SV=1 Back     alignment and function description
>sp|Q5ZI08|SPT5H_CHICK Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1711
2555868011547 suppressor of ty, putative [Ricinus comm 0.542 0.599 0.553 0.0
224100723 1853 hypothetical protein POPTRDRAFT_765239 [ 0.523 0.483 0.540 0.0
359486871 2667 PREDICTED: uncharacterized protein LOC10 0.641 0.411 0.477 0.0
296085968675 unnamed protein product [Vitis vinifera] 0.390 0.991 0.691 0.0
152376671493 kow domain-containing transcription fact 0.637 0.730 0.464 0.0
2978064031476 hypothetical protein ARALYDRAFT_487210 [ 0.618 0.717 0.468 0.0
2241098441697 predicted protein [Populus trichocarpa] 0.443 0.447 0.555 0.0
4494653221690 PREDICTED: uncharacterized protein LOC10 0.580 0.588 0.491 0.0
3565741691495 PREDICTED: uncharacterized protein LOC10 0.383 0.439 0.607 0.0
356534382712 PREDICTED: putative transcription elonga 0.389 0.936 0.616 0.0
>gi|255586801|ref|XP_002534015.1| suppressor of ty, putative [Ricinus communis] gi|223525980|gb|EEF28368.1| suppressor of ty, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  996 bits (2576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/1026 (55%), Positives = 688/1026 (67%), Gaps = 98/1026 (9%)

Query: 73   CDPEMATDKGKAVAVGKDAYGKRKRNDGSSGVKPHNRKRKNRSVLQFVEDAADVDYDDDD 132
            C  +M+  KGK VA G       KR           RKR NR+VL+F ED+AD+D D+++
Sbjct: 36   CHRKMSA-KGKEVATGS------KRKHSDGDGSGGGRKRNNRAVLRFFEDSADLDEDEEE 88

Query: 133  EEEVGNESDNSGGFADDDFMEELFDAQPKVNNEMGQAHNLPFIPKEEEMDEEEFDKMMEE 192
             +    E             EE  D + K+  E  +  N+PF+PKEE M EEEFDKMMEE
Sbjct: 89   SDFSDLE-------------EEEPDIELKLKKEPAKTPNIPFVPKEEVMYEEEFDKMMEE 135

Query: 193  RYKS-NKLIRYAEEDYEAKKMLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDL 251
            RY+  +  +RYAE+ YEAK  +ER+  +    DP +WKVKCM GRER SAFCLMQKFVDL
Sbjct: 136  RYRDGSTFVRYAEDVYEAK-TVERDSILTSSRDPIVWKVKCMVGRERHSAFCLMQKFVDL 194

Query: 252  QSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLS 311
            +SLG+K+QIISAF+VDH+KGF+FIEADKQCDINEACKGL  IY +R+AP+PKNEVSH+LS
Sbjct: 195  KSLGTKLQIISAFSVDHVKGFVFIEADKQCDINEACKGLCSIYSTRVAPIPKNEVSHVLS 254

Query: 312  AQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNNARKRATVKLIPRIDLQALAAKFGGGVA 371
             + K N V EG WA VK+GKYKGDLAQ+V VN+ARKRATVKLIPRIDLQALA KFGGGV+
Sbjct: 255  VRSKSNAVREGMWARVKSGKYKGDLAQIVTVNDARKRATVKLIPRIDLQALAQKFGGGVS 314

Query: 372  MKKTDSPAPRLISPSELEEFRPLIQYRRDRDTGKVFENLDGMMLKDGYLYKKVSIDSLSC 431
            MK   +PAPRLIS SELEEFRPL+Q+RRDRDTG   E LDG+MLKDGYLYK+VS+DSLSC
Sbjct: 315  MKNAATPAPRLISSSELEEFRPLVQHRRDRDTGLFVEVLDGLMLKDGYLYKRVSVDSLSC 374

Query: 432  WGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVGKGGDKGEGSSGSSLENS 491
            WGVVPSEEELLKFQPSE+ ES + EWL QLYG  KKKR   + KGG+KGE SSGS +++S
Sbjct: 375  WGVVPSEEELLKFQPSENTESDNTEWLKQLYGSPKKKRIIGIDKGGEKGESSSGSGIQHS 434

Query: 492  FELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQ 551
            FELY+LVCF RKDFG+I+GMEKDD+YKILKEG E P VVTV R  +K GP DM+FTALD 
Sbjct: 435  FELYDLVCFSRKDFGVIIGMEKDDYYKILKEGPEAPVVVTVARNDIKKGPSDMRFTALDH 494

Query: 552  SMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKV- 610
              K+IS+ND  +V EGP KDRQG VK+IYRGI+F++D+NETENGGYFCSK+Q CEK K+ 
Sbjct: 495  RTKIISVNDMVKVVEGPLKDRQGTVKQIYRGIIFMHDQNETENGGYFCSKAQLCEKIKLS 554

Query: 611  -EACEGKGGGSGASGFEEFPSSPKSPLSPKRSWQAREQNTEFKRGDRDGMFAVGQTLRIR 669
             + C  KGG S +  FE+ PSSPKSPLSPKR WQ ++ N +F RG++DGMF++GQTLRIR
Sbjct: 555  FDVCNEKGGESSSFSFEDIPSSPKSPLSPKRPWQTKDNNWDFNRGEKDGMFSIGQTLRIR 614

Query: 670  VGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSASFKP 729
            VGPLKGYLCRVLA+RYSDVTVK+DS+ KI TVK EHL+E+RGKS  T  S+D GS+SFKP
Sbjct: 615  VGPLKGYLCRVLAIRYSDVTVKVDSKHKIFTVKCEHLSEIRGKSSATPLSEDPGSSSFKP 674

Query: 730  FDPLGAGGGSGDWMSAATTSAEGDRWNAGGASA-GRSSWPSFPVVGTSLHAESNPANAFG 788
            FD LG  GGS  W   A TSA+GDRWNAGG +A     W       TS + ES+   + G
Sbjct: 675  FDLLGTEGGSKGWTDGAGTSADGDRWNAGGITAESEDGWNK-----TSTNIESSGGTSGG 729

Query: 789  SGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGK 848
             G    +  +    WG       NS+   AAA       WNK   KN+  N      WG 
Sbjct: 730  WGKAADSSKDSGDGWGQAKLDPGNSTLDAAAA-------WNKE--KNVAEN--PTSSWGD 778

Query: 849  EDAGSSLQDSQDNWGKNKDACDNQANWKKSDSWDKGKKIIGNST-----------SSWGD 897
                ++ ++ QD+W  +KD  ++++ W+KS S+  G+  +  ST            +W  
Sbjct: 779  V---ATAKNQQDSW-TSKDTVESRS-WEKSKSFTAGEDNLSKSTGWNQQKSQNKWDTWRS 833

Query: 898  KTAEKN----EPDSWGKGKDGSSGSKSDWNSSALATENPTVSWGNASGGWTQQK------ 947
                +N    + DSWGK KD S G K DW SS    E PT SWGN  G W Q+       
Sbjct: 834  TAEAQNKNTVQGDSWGKAKDSSVGGKVDWKSSTATAEKPTKSWGNEGGSWAQESKSTDEA 893

Query: 948  ---------GGNM-----------DERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNK 987
                     G N            ++ +GW    SG+Q Q   WNKPK+ GAD GSSW K
Sbjct: 894  SDWMNGKVDGANQTANWSNQKNQSEDAAGWTTGGSGSQSQTDNWNKPKSSGADGGSSWGK 953

Query: 988  QDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSS 1047
            Q    + D           DGGSSW KK G S + KQ+GGSSWGKQ G SS GKQ+GGSS
Sbjct: 954  QGKPETFDA----------DGGSSWNKK-GESSLEKQEGGSSWGKQGGASSWGKQEGGSS 1002

Query: 1048 WGKQDG 1053
            W KQDG
Sbjct: 1003 WSKQDG 1008




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100723|ref|XP_002311988.1| hypothetical protein POPTRDRAFT_765239 [Populus trichocarpa] gi|222851808|gb|EEE89355.1| hypothetical protein POPTRDRAFT_765239 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359486871|ref|XP_002272748.2| PREDICTED: uncharacterized protein LOC100256388 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296085968|emb|CBI31409.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15237667|ref|NP_196049.1| kow domain-containing transcription factor 1 [Arabidopsis thaliana] gi|332003341|gb|AED90724.1| kow domain-containing transcription factor 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297806403|ref|XP_002871085.1| hypothetical protein ARALYDRAFT_487210 [Arabidopsis lyrata subsp. lyrata] gi|297316922|gb|EFH47344.1| hypothetical protein ARALYDRAFT_487210 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224109844|ref|XP_002315331.1| predicted protein [Populus trichocarpa] gi|222864371|gb|EEF01502.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449465322|ref|XP_004150377.1| PREDICTED: uncharacterized protein LOC101208989 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356574169|ref|XP_003555224.1| PREDICTED: uncharacterized protein LOC100818587 [Glycine max] Back     alignment and taxonomy information
>gi|356534382|ref|XP_003535734.1| PREDICTED: putative transcription elongation factor SPT5 homolog 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1711
TAIR|locus:21799791493 KTF1 "AT5G04290" [Arabidopsis 0.430 0.492 0.4 2.7e-245
TAIR|locus:2040954989 AT2G34210 [Arabidopsis thalian 0.154 0.266 0.446 5.4e-70
POMBASE|SPAC23C4.19990 spt5 "transcription elongation 0.133 0.230 0.342 8.7e-37
ZFIN|ZDB-GENE-001207-11084 supt5h "suppressor of Ty 5 hom 0.140 0.221 0.304 4.4e-36
UNIPROTKB|Q5ZI081079 SUPT5H "Transcription elongati 0.150 0.238 0.305 2.2e-35
SGD|S0000044701063 SPT5 "Component of the univers 0.155 0.250 0.304 4.7e-35
DICTYBASE|DDB_G02876611131 spt5 "transcription initiation 0.095 0.145 0.294 9.4e-35
MGI|MGI:12024001082 Supt5 "suppressor of Ty 5" [Mu 0.150 0.237 0.305 1.6e-34
UNIPROTKB|E9PTB21083 E9PTB2 "Uncharacterized protei 0.150 0.237 0.305 1.6e-34
UNIPROTKB|I3LA481083 SUPT5H "Uncharacterized protei 0.150 0.237 0.305 5.4e-34
TAIR|locus:2179979 KTF1 "AT5G04290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1317 (468.7 bits), Expect = 2.7e-245, Sum P(4) = 2.7e-245
 Identities = 332/830 (40%), Positives = 427/830 (51%)

Query:   489 ENSFELYELVCFGRKDFGLIVGME-KDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFT 547
             E+S+ELY LVCF RKDFGLIVG++ K D YK+LKEG +GP VVTV ++ ++NGPFD KFT
Sbjct:   434 ESSYELYNLVCFSRKDFGLIVGVDDKGDGYKVLKEGIDGPVVVTVGKKEMQNGPFDSKFT 493

Query:   548 ALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEK 607
             ALD + K IS+ND  ++S+GPS+ +QG+V+++YRGI+F+YDE+E ENGGYFC KSQ CEK
Sbjct:   494 ALDLNKKQISVNDVVKISKGPSEGKQGVVRQVYRGIIFLYDESEEENGGYFCCKSQSCEK 553

Query:   608 TKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RSWQAREQNTEFKRGDRDGMFAVGQT 665
              K+                               + WQ RE+     +GD    +++GQ 
Sbjct:   554 VKLFTEESNEKTGGFDGTAFEDFVSSPKSPLSPEKEWQPRERYNSSNQGDIGSTYSIGQK 613

Query:   666 LRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSA 725
             LRIRVGPLKGYLCRV+A+RYSDVTVKLDSQ KI TVK EHLAEVR ++ + STS D G+ 
Sbjct:   614 LRIRVGPLKGYLCRVIALRYSDVTVKLDSQHKIFTVKSEHLAEVRDRNTVLSTSGDAGTG 673

Query:   726 SFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNP-A 784
             SF+PF  LG    +GDW   A TS+EG  WN GG S       +       L  E NP  
Sbjct:   674 SFQPFGMLGTESSTGDWAIGAGTSSEGGNWNIGGPSTDSHESLNIERNMVQLCREKNPWG 733

Query:   785 NAFGSGDNGAN-KDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAY 843
              +  + D      D+  SAW +   A +N      A+       WN    K   S  G  
Sbjct:   734 GSKPTSDVSPTVADDNTSAWANA--AAENKP----ASASDQPGGWNPWG-KTPASEAGTV 786

Query:   844 GGWGKEDAGSSLQDSQDNWGKNKDACDNQANXXXXXXXXXXXXXXGNSTSS-WG------ 896
              GWG   A S+++ S  +W K   +  N A+                   S WG      
Sbjct:   787 SGWGDTSA-SNVEAS--SWEKQGASTSNVADLGSWGTHGGSSGGNKQDEDSVWGKLCEAS 843

Query:   897 DKTAEKNEPXXXXXXXXXXXXXXXXXXXXALATENPTVSWGN-------ASGG--WTQQ- 946
             + + +K E                     + A++   VSWG        + GG  W+ Q 
Sbjct:   844 ESSQKKEESSWGKKGGSDGESSWGNKDGNSSASKKDGVSWGQQDKGSDESKGGSAWSNQC 903

Query:   947 ----KGGNMDERSGWKK---DDSGNQDQRSGWNKPKTFGADVGSSWNKQ-DGICSSDVQD 998
                  G   D  SGW K   D + N      W +P       GSSW K+ DG  S   +D
Sbjct:   904 GDFGSGKKKDGSSGWNKSAEDSNANSKGVPDWGQPND-----GSSWGKKGDGAASWGKKD 958

Query:   999 GGSSWAKQDXXXXXXXXXXXXLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLA 1058
              G SW K+D               K DGGSSWGK+D G    K DGGSSW K        
Sbjct:   959 DGGSWGKKDDG------------NKDDGGSSWGKKDDGQ---KDDGGSSWEK-------- 995

Query:  1059 KQDGGSSWGKQDRG-SSWGKQDEGSS-WSKRD-GGSSWGKQDGGSSL--AKQDGGSSWGK 1113
             K DGGSSWGK+D G SSWGK+D+G S W K+D GGSSWGK+D G SL   K DG SSWGK
Sbjct:   996 KFDGGSSWGKKDDGGSSWGKKDDGGSLWGKKDDGGSSWGKEDDGGSLWGKKDDGESSWGK 1055

Query:  1114 QDGG-SSLGKQD-GGSSWSKQD-GGSSWGKQD-GGSSWGKQDGGSSWGKQD--G-GSSW- 1165
             +D G SS GK+D GGSSW K+D GG S    D GG  +G + GG   G +D  G GSS+ 
Sbjct:  1056 KDDGESSWGKKDDGGSSWGKKDEGGYSEQTFDRGGRGFGGRRGGGRRGGRDQFGRGSSFG 1115

Query:  1166 -SKEPDQQHRKNGGSSWGNRDG---GSSWSKQTDQQDNQEKPLESDXXXXXXXXXXXXXX 1221
              S++P    + +GGSSWG +DG   GSSW K+ D         + +              
Sbjct:  1116 NSEDPAPWSKPSGGSSWGKQDGDGGGSSWGKENDAGGGSSWGKQDNGVGSSWGKQNDGSG 1175

Query:  1222 XXXXXEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTD----WNKK 1267
                     +  G GS     ++ +GG    G+ W ++D G D    W K+
Sbjct:  1176 GGSSWGKQNDAGGGS--SWGKQDSGG---DGSSWGKQDGGGDSGSAWGKQ 1220


GO:0000166 "nucleotide binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006306 "DNA methylation" evidence=IMP
GO:0030422 "production of siRNA involved in RNA interference" evidence=IMP
TAIR|locus:2040954 AT2G34210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC23C4.19 spt5 "transcription elongation factor Spt5" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-001207-1 supt5h "suppressor of Ty 5 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZI08 SUPT5H "Transcription elongation factor SPT5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
SGD|S000004470 SPT5 "Component of the universally conserved Spt4/5 complex (DSIF complex)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0287661 spt5 "transcription initiation factor Spt5" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1202400 Supt5 "suppressor of Ty 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E9PTB2 E9PTB2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LA48 SUPT5H "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh4_pg.C_LG_VIII000253
hypothetical protein (1853 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1711
cd0988886 cd09888, NGN_Euk, Eukaryotic N-Utilization Substan 2e-36
pfam0343984 pfam03439, Spt5-NGN, Early transcription elongatio 3e-26
cd0608138 cd06081, KOW_Spt5_1, KOW domain of Spt5, repeat 1 9e-16
PRK08559153 PRK08559, nusG, transcription antitermination prot 2e-12
cd0608443 cd06084, KOW_Spt5_4, KOW domain of Spt5, repeat 4 7e-12
TIGR00405145 TIGR00405, L26e_arch, ribosomal protein L24p/L26e, 2e-09
cd0988782 cd09887, NGN_Arch, Archaeal N-Utilization Substanc 2e-07
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 8e-07
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 3e-06
COG5164607 COG5164, SPT5, Transcription elongation factor [Tr 7e-06
pfam1194292 pfam11942, Spt5_N, Spt5 transcription elongation f 8e-06
PRK12678 672 PRK12678, PRK12678, transcription termination fact 1e-05
cd0608552 cd06085, KOW_Spt5_5, KOW domain of Spt5, repeat 5 2e-05
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 7e-05
PRK12678 672 PRK12678, PRK12678, transcription termination fact 1e-04
smart00738106 smart00738, NGN, In Spt5p, this domain may confer 1e-04
cd0800099 cd08000, NGN, N-Utilization Substance G (NusG) N-t 1e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 2e-04
PRK12678 672 PRK12678, PRK12678, transcription termination fact 7e-04
PRK12678 672 PRK12678, PRK12678, transcription termination fact 8e-04
COG0250178 COG0250, NusG, Transcription antiterminator [Trans 0.004
>gnl|CDD|193577 cd09888, NGN_Euk, Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1) Back     alignment and domain information
 Score =  132 bits (335), Expect = 2e-36
 Identities = 37/85 (43%), Positives = 56/85 (65%)

Query: 227 IWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDINEA 286
           +W VKC  G+ER+    LM+KF+DLQ  G+ + I S FA D +KG+I+IEA K+  + +A
Sbjct: 2   LWAVKCKPGKEREIVISLMRKFLDLQRTGNPLGIKSVFARDGLKGYIYIEARKEAHVKDA 61

Query: 287 CKGLSGIYYSRLAPVPKNEVSHLLS 311
            +GL G+Y + +  VP  E+  +LS
Sbjct: 62  IEGLRGVYLNTIKLVPIKEMPDVLS 86


The N-Utilization Substance G (NusG) protein and its eukaryotic homolog, Spt5, are involved in transcription elongation and termination. NusG contains an NGN domain at its N-terminus and Kyrpides Ouzounis and Woese (KOW) repeats at its C-terminus. Spt5 forms an Spt4-Spt5 complex that is an essential RNA polymerase II elongation factor. NusG was originally discovered as an N-dependent antitermination enhancing activity in Escherichia coli, and has a variety of functions such as its involvement in RNA polymerase elongation and Rho-termination in bacteria. Orthologs of the NusG gene exist in all bacteria, but their functions and requirements are different. Spt5-like is homologous to the Spt5 proteins present in all eukaryotes, which is unique as it encodes a protein with an additional long carboxy-terminal extension that contains WG/GW motifs. Spt5-like, or KTF1 (KOW domain-containing Transcription Factor 1), is a RNA-directed DNA methylation (RdDM) pathway effector in plants. Length = 86

>gnl|CDD|217558 pfam03439, Spt5-NGN, Early transcription elongation factor of RNA pol II, NGN section Back     alignment and domain information
>gnl|CDD|240505 cd06081, KOW_Spt5_1, KOW domain of Spt5, repeat 1 Back     alignment and domain information
>gnl|CDD|181467 PRK08559, nusG, transcription antitermination protein NusG; Validated Back     alignment and domain information
>gnl|CDD|240508 cd06084, KOW_Spt5_4, KOW domain of Spt5, repeat 4 Back     alignment and domain information
>gnl|CDD|129499 TIGR00405, L26e_arch, ribosomal protein L24p/L26e, archaeal Back     alignment and domain information
>gnl|CDD|193576 cd09887, NGN_Arch, Archaeal N-Utilization Substance G (NusG) N-terminal (NGN) domain Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|227493 COG5164, SPT5, Transcription elongation factor [Transcription] Back     alignment and domain information
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic N-terminal Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|240509 cd06085, KOW_Spt5_5, KOW domain of Spt5, repeat 5 Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|197850 smart00738, NGN, In Spt5p, this domain may confer affinity for Spt4p Back     alignment and domain information
>gnl|CDD|193574 cd08000, NGN, N-Utilization Substance G (NusG) N-terminal (NGN) domain Superfamily Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|223328 COG0250, NusG, Transcription antiterminator [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1711
KOG19991024 consensus RNA polymerase II transcription elongati 100.0
COG5164607 SPT5 Transcription elongation factor [Transcriptio 100.0
PRK08559153 nusG transcription antitermination protein NusG; V 99.91
PF0343984 Spt5-NGN: Early transcription elongation factor of 99.86
TIGR00405145 L26e_arch ribosomal protein L24p/L26e, archaeal. T 99.81
KOG19991024 consensus RNA polymerase II transcription elongati 99.8
COG0250178 NusG Transcription antiterminator [Transcription] 99.73
PRK05609181 nusG transcription antitermination protein NusG; V 99.57
TIGR01956258 NusG_myco NusG family protein. This model represen 99.57
TIGR00922172 nusG transcription termination/antitermination fac 99.52
PF1194297 Spt5_N: Spt5 transcription elongation factor, acid 99.49
COG5164607 SPT5 Transcription elongation factor [Transcriptio 99.47
PRK09014162 rfaH transcriptional activator RfaH; Provisional 99.31
TIGR01955159 RfaH transcriptional activator RfaH. This model re 99.28
smart00738106 NGN In Spt5p, this domain may confer affinity for 99.19
PF0235792 NusG: Transcription termination factor nusG; Inter 97.83
KOG09211282 consensus Dosage compensation complex, subunit MLE 97.41
PF0046732 KOW: KOW motif; InterPro: IPR005824 Ribosomes are 97.27
PF0046732 KOW: KOW motif; InterPro: IPR005824 Ribosomes are 97.1
KOG09211282 consensus Dosage compensation complex, subunit MLE 97.0
KOG3973465 consensus Uncharacterized conserved glycine-rich p 96.83
TIGR00405145 L26e_arch ribosomal protein L24p/L26e, archaeal. T 95.58
smart0073928 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i 95.36
PRK08559153 nusG transcription antitermination protein NusG; V 95.1
KOG3262215 consensus H/ACA small nucleolar RNP component GAR1 94.65
smart0073928 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i 94.55
CHL0014183 rpl24 ribosomal protein L24; Validated 94.12
PRK01191120 rpl24p 50S ribosomal protein L24P; Validated 94.08
PRK1228176 rplX 50S ribosomal protein L24; Reviewed 94.04
TIGR01955159 RfaH transcriptional activator RfaH. This model re 93.91
TIGR00922172 nusG transcription termination/antitermination fac 93.66
PRK00004105 rplX 50S ribosomal protein L24; Reviewed 93.65
PRK05609181 nusG transcription antitermination protein NusG; V 93.1
CHL0014183 rpl24 ribosomal protein L24; Validated 92.49
PRK09014162 rfaH transcriptional activator RfaH; Provisional 92.16
KOG3262215 consensus H/ACA small nucleolar RNP component GAR1 92.11
TIGR01079104 rplX_bact ribosomal protein L24, bacterial/organel 91.96
PF00524130 PPV_E1_N: E1 Protein, N terminal domain; InterPro: 91.86
PRK01191120 rpl24p 50S ribosomal protein L24P; Validated 91.62
PRK1228176 rplX 50S ribosomal protein L24; Reviewed 91.58
TIGR01080114 rplX_A_E ribosomal protein L24p/L26e, archaeal/euk 91.38
TIGR01956258 NusG_myco NusG family protein. This model represen 91.19
COG0250178 NusG Transcription antiterminator [Transcription] 91.15
PTZ00194143 60S ribosomal protein L26; Provisional 90.88
TIGR01080114 rplX_A_E ribosomal protein L24p/L26e, archaeal/euk 90.06
PTZ00194143 60S ribosomal protein L26; Provisional 89.99
COG0198104 RplX Ribosomal protein L24 [Translation, ribosomal 89.81
PRK00004105 rplX 50S ribosomal protein L24; Reviewed 89.62
PF1162353 DUF3252: Protein of unknown function (DUF3252); In 85.99
TIGR01079104 rplX_bact ribosomal protein L24, bacterial/organel 85.71
COG2933358 Predicted SAM-dependent methyltransferase [General 82.83
KOG1708236 consensus Mitochondrial/chloroplast ribosomal prot 81.59
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] Back     alignment and domain information
Probab=100.00  E-value=1.6e-130  Score=1187.64  Aligned_cols=631  Identities=34%  Similarity=0.501  Sum_probs=489.6

Q ss_pred             CcccccccccccccccccccCCCCCchhhcCCCcCCC--CCCCCccchhhhhccCccccccccccCCCCCCCccccCCHH
Q 000294          107 HNRKRKNRSVLQFVEDAADVDYDDDDEEEVGNESDNS--GGFADDDFMEELFDAQPKVNNEMGQAHNLPFIPKEEEMDEE  184 (1711)
Q Consensus       107 r~rKRkrr~~n~FiDdEAEVDDDeEeEDEeeEe~e~~--~~Fi~dD~~~d~~e~~~~~~~d~r~~~~l~~r~~eed~DaE  184 (1711)
                      ..+|+|+.+...||+.|||||||+||+|+|+|++|+.  ..||. +..+++++++    .++|.|+.++ ++..+  .+|
T Consensus        55 ~~~~~k~~s~~gf~~~e~dvDdeveddd~~~edEed~~~~~~ie-~~e~~~~d~~----~~~R~~~~~~-~~~~~--~~e  126 (1024)
T KOG1999|consen   55 PDEKDKKESGGGFIDREADVDDEVEDDDDDEEDEEDIELHNDIE-ESEEDLPDER----GDRRLRRYWD-RQLNE--LEE  126 (1024)
T ss_pred             hhhhccccccccccccccccccccccccchhccCcchhhcccch-hccccccccc----ccccchhhhh-hhhhH--HHH
Confidence            3456677888899999999999988776666554321  12221 1111222211    1122222222 12222  677


Q ss_pred             HHHHHHHHHhccccchhhchhhHHHhhhcccccCCCCCCCCcEEEEEeccchHHHHHHHHHHHHHhhccCCCCCcEEEEE
Q 000294          185 EFDKMMEERYKSNKLIRYAEEDYEAKKMLEREYHMPCPEDPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAF  264 (1711)
Q Consensus       185 elAe~lkERY~r~s~~~y~~d~~e~~~~VpQq~LLPSV~DPkLWaVKCk~GkEReVV~~LmrKii~lq~~g~~L~I~SVF  264 (1711)
                      ++|+.|+|||....  .|.+.++++.++|+||+|||+|+||+||+|||++|+||+||+|||+||++++++..||+|+|||
T Consensus       127 ~~~~r~aee~~~~~--~~~~~~~~~~d~I~Q~~LLPsvkDP~LW~VKC~iG~Er~~a~~LMrK~i~~~~t~~plqI~Sv~  204 (1024)
T KOG1999|consen  127 ELAKRYAEEYIEKY--GFEDGDDEDSDDIPQQALLPSVKDPNLWIVKCKIGREREVAFCLMRKFIELDKTDTPLQIKSVF  204 (1024)
T ss_pred             HHHHHHHHhhcccc--cccccchhcccchhHHhhCCCCCCCCeeEEEeccccHHHHHHHHHHHHHhhcccCCCceEEEEE
Confidence            77777777776532  1232333445889999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEeccchhHHHHhcCCCCeEeccccccCHHHHHHHhhcccccccccCCCEEEEecCcCCCCcEEEEEEeC
Q 000294          265 AVDHIKGFIFIEADKQCDINEACKGLSGIYYSRLAPVPKNEVSHLLSAQIKRNEVSEGTWAYVKNGKYKGDLAQVVYVNN  344 (1711)
Q Consensus       265 vpd~lKGYIYIEA~kq~dVk~AIkGI~gVy~~k~~pVPikEM~dLL~vkkk~~~Lk~GdwVRIKrGpYKGDLAQVveVde  344 (1711)
                      ++++|+|||||||++|.||++||++|++||.++|+||||+||++||+|.++.+.|++|.|||||+|+||||||||++|++
T Consensus       205 a~D~lkGyIYIEA~KqshV~~Ai~gv~niy~~~~~lVPikEM~dvLkV~K~~v~L~~gswVRiKrG~YKgDLAqVd~Vd~  284 (1024)
T KOG1999|consen  205 AKDHLKGYIYIEADKQSHVKEAIEGVRNIYANRILLVPIKEMPDVLKVVKKVVQLSEGSWVRIKRGKYKGDLAQVDDVDE  284 (1024)
T ss_pred             eccccceeEEEEechhHHHHHHHhhhhhheeccEEEEehhHhhhhhhhhhhhhccCccceEEEeccccccceeeeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEeccCchhhHHhhcCCCcccCCCCCCCCCCCChhhHhhhcCceeecccCCCCceEEecCCceeecceEEEEE
Q 000294          345 ARKRATVKLIPRIDLQALAAKFGGGVAMKKTDSPAPRLISPSELEEFRPLIQYRRDRDTGKVFENLDGMMLKDGYLYKKV  424 (1711)
Q Consensus       345 nk~eVtVKLIPRIDy~~l~~k~~gg~~kKK~~RPPqRLFn~~Eark~~~~~~~rrd~~tg~~f~i~~G~~y~DGFLyK~f  424 (1711)
                      ++++|+|||||||||+++..+++ ....++++||++|||+..|++.++++++.+++..++.+|+++.+++|+||||||.|
T Consensus       285 ~~n~v~lKlIPRIDyq~~~~~~~-~~~~~ka~~p~~R~~~~~~~~~~~ir~~~~~~~~~Gd~l~~~gn~~~~dGFLyK~v  363 (1024)
T KOG1999|consen  285 NRNRVRLKLIPRIDYQKLLGKLE-ETTDKKAFRPAPRRPNQKEFDEEAIRSEGRRDHSRGDYLEFEGNELFKDGFLYKDV  363 (1024)
T ss_pred             cCCEEEEEEeccccHHhhhcccc-ccchhhccCCcccCCCccccchhhhhhccccccccCceEEecCCceeccceeeeee
Confidence            99999999999999999998887 56677889999999999999999988888999999999988888899999999999


Q ss_pred             eccceEecCCCCCHHHHhhcCCCCCCccccHHHHHHHH-------------------hccc--cccEEEe----------
Q 000294          425 SIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLY-------------------GERK--KKRTTIV----------  473 (1711)
Q Consensus       425 kI~sL~t~dVnPTLEEL~kF~~~~~de~~DL~~La~~~-------------------ge~k--k~kii~v----------  473 (1711)
                      +|++|++++|+|||+||+||++..+  .+||+.++.++                   |+++  |+.|..|          
T Consensus       364 ~i~sI~t~gV~PT~dELekF~~~~e--~~Dl~~~st~~~~r~~~~~F~~GD~VeV~~Gel~glkG~ve~vdg~~vti~~~  441 (1024)
T KOG1999|consen  364 SISSIITDGVKPTLDELEKFNPSNE--EGDLEWVSTLKSNRKKKHLFSPGDAVEVIVGELKGLKGKVESVDGTIVTIMSK  441 (1024)
T ss_pred             ecceeeecCcccCHHHHHhhcCCCc--cccceeeeeeccccccccccCCCCeEEEeeeeeccceeEEEeccCceEEEeec
Confidence            9999999999999999999998744  78888765221                   1111  1111111          


Q ss_pred             ---------------------------ecCCCcc-----------------------------------cccCCCCcCcc
Q 000294          474 ---------------------------GKGGDKG-----------------------------------EGSSGSSLENS  491 (1711)
Q Consensus       474 ---------------------------~kGg~kg-----------------------------------E~ssG~~s~G~  491 (1711)
                                                 +.|.+++                                   |+.+++..+++
T Consensus       442 ~e~l~~pl~~~~~eLrKyF~~GDhVKVi~G~~eG~tGlVvrVe~~~vi~~Sd~t~eel~Vf~~dlq~c~ev~~gv~~~ge  521 (1024)
T KOG1999|consen  442 HEDLKGPLEVPASELRKYFEPGDHVKVIAGRYEGDTGLVVRVEQGDVILLSDLTMEELKVFARDLQLCSEVTLGVEKSGE  521 (1024)
T ss_pred             cccCCCccccchHhhhhhccCCCeEEEEeccccCCcceEEEEeCCeEEEEecCccceeeEEehhcccchheeeccccccc
Confidence                                       1122222                                   34566778899


Q ss_pred             cccCceEEEcCCceEEEEEEeccceEEEccCCCCCCceEEEecccccCCCCCCcccccccCCCcccCCCeEEEecCCCCC
Q 000294          492 FELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKD  571 (1711)
Q Consensus       492 FeLgDLVQLD~~TVGVIVrVEkDe~fkVLd~~gd~~~VvtVk~~~I~~K~~~rr~vAtD~~gk~I~vGD~VKVIdGp~kG  571 (1711)
                      |||||||||+.++|||||++++ +.|+||++++   .|++|++++|..|+..++++|+|+++|+|+++|+|+||.||+++
T Consensus       522 ~e~hdlVqLd~~~vgvI~rle~-e~~~vl~~~g---~v~~i~~~~i~~kk~~r~~~~~D~~~n~I~~kD~Vkvi~Gp~~g  597 (1024)
T KOG1999|consen  522 YELHDLVQLDNQNVGVIVRLER-ETFQVLGMNG---KVVTIRKSSITKKKDNRKAVAVDRNGNEIRVKDTVKVIGGPSKG  597 (1024)
T ss_pred             ccccceeecCCCcEEEEEEecc-hheeeecCcC---ceEEEeechhhhhhhhhhheeecccCCeecccceEEEecCCCCC
Confidence            9999999999999999999999 5999999885   79999999999998888899999999999999999999999999


Q ss_pred             ceEEEEEEECCEEEEEeCcceeeccEEEEeCCceeecccccccCCCCCCCCCCCCCC-CCCCCCCCCCCcchhh--hccC
Q 000294          572 RQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACEGKGGGSGASGFEEF-PSSPKSPLSPKRSWQA--REQN  648 (1711)
Q Consensus       572 RqG~VlHIyRs~VFL~Sr~~tENgGIFVvRarnv~tv~~~~~~~Kgg~~~~~~f~dl-~~sp~~~lsp~rp~~~--~~~~  648 (1711)
                      |+|.|+||||.+||||+++++||+||||||++||++++....    ..+.+...++| +|+|.-.++|+.|...  ....
T Consensus       598 ~~G~v~~i~r~~~F~h~r~~~En~Gv~vck~k~~~~~g~~~s----t~~~~~~~~~l~~msP~r~~sp~~~~~~~ga~g~  673 (1024)
T KOG1999|consen  598 REGEVLHIYRPFVFLHSRKNLENGGVFVCKEKNLILAGGKKS----TNSLAFNKGALAPMSPGRIQSPMGPSGGPGAFGG  673 (1024)
T ss_pred             ccCccceeecceeeeeehhhcccCCeEEEecCCceeccccCc----ccchhhcccccCCCCcccccCCcCCCCCCCCcCc
Confidence            999999999999999999999999999999999998764211    01111111112 2333212333333211  1111


Q ss_pred             ccccCCCCCCccccCCEEEEccCCCCCceeEEEEEeCCeEEEEecCCceEEEEeCCccccccCC--c--cc---------
Q 000294          649 TEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGK--S--FI---------  715 (1711)
Q Consensus       649 ~~~gRGgRd~d~lIGKTVkIrkGPYKGylGiVKDaTdt~ARVELHSk~KtITVdK~~Ls~v~~~--~--~~---------  715 (1711)
                      +..+|++++++.|||+||+|+.||||||+|||||+|+++||||||++|++|+|++.+|.++...  .  ++         
T Consensus       674 ~gggrGg~rd~~l~GktVrI~~Gp~KG~~GivkD~~~~~arVELhs~~~ti~vd~~~~~~v~~~~~~g~~~sYg~~~~~~  753 (1024)
T KOG1999|consen  674 HGGGRGGNRDDSLLGKTVRIRLGPKKGYLGIVKDVNGDTARVELHSKCVTIKVDRLKRKIVGSTRDGGETSSYGERTPGY  753 (1024)
T ss_pred             CccCccCcCcchhcCcEEEEecCCcccccceeEeccCCeeEEEEEeccEEEEechhhceEEeeccCCCCccccccccccc
Confidence            2224444333689999999999999999999999999999999999999999999999976422  1  11         


Q ss_pred             ---ccccCCCCCCCcc-----CCC---CCCC-CCCCCCCCCCcccCCCCCCCCCC
Q 000294          716 ---TSTSDDQGSASFK-----PFD---PLGA-GGGSGDWMSAATTSAEGDRWNAG  758 (1711)
Q Consensus       716 ---~s~~~d~~s~~~~-----p~~---~~g~-~~~~g~~~~g~gt~~~~~~wn~G  758 (1711)
                         +.+.+++++.+..     |+-   +++. .++..+++.|++||+++.+|++.
T Consensus       754 g~~~~~~~~~Gs~tp~~~s~tpl~~~s~tp~~~~~~Tp~~dG~rTP~r~~aW~~~  808 (1024)
T KOG1999|consen  754 GRVTPARYGMGSSTPMYGSNTPLWGGSRTPARDGGATPSHDGSRTPARGRAWNPY  808 (1024)
T ss_pred             cccCccccCCCCcCccCCCCCCCCCcccCccccCCCCcCCCCCcCCCCCCCcCCC
Confidence               1112233332111     111   1111 24555666788888888888865



>COG5164 SPT5 Transcription elongation factor [Transcription] Back     alignment and domain information
>PRK08559 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain Back     alignment and domain information
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal Back     alignment and domain information
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] Back     alignment and domain information
>COG0250 NusG Transcription antiterminator [Transcription] Back     alignment and domain information
>PRK05609 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>TIGR01956 NusG_myco NusG family protein Back     alignment and domain information
>TIGR00922 nusG transcription termination/antitermination factor NusG Back     alignment and domain information
>PF11942 Spt5_N: Spt5 transcription elongation factor, acidic N-terminal; InterPro: IPR022581 This is the very acidic N-terminal domain of the early transcription elongation factor Spt5 [] Back     alignment and domain information
>COG5164 SPT5 Transcription elongation factor [Transcription] Back     alignment and domain information
>PRK09014 rfaH transcriptional activator RfaH; Provisional Back     alignment and domain information
>TIGR01955 RfaH transcriptional activator RfaH Back     alignment and domain information
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p Back     alignment and domain information
>PF02357 NusG: Transcription termination factor nusG; InterPro: IPR006645 This sequence is identified by the NGN domain and is represented by the bacterial antitermination protein NusG Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] Back     alignment and domain information
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal Back     alignment and domain information
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information
>PRK08559 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information
>CHL00141 rpl24 ribosomal protein L24; Validated Back     alignment and domain information
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated Back     alignment and domain information
>PRK12281 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>TIGR01955 RfaH transcriptional activator RfaH Back     alignment and domain information
>TIGR00922 nusG transcription termination/antitermination factor NusG Back     alignment and domain information
>PRK00004 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>PRK05609 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>CHL00141 rpl24 ribosomal protein L24; Validated Back     alignment and domain information
>PRK09014 rfaH transcriptional activator RfaH; Provisional Back     alignment and domain information
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>PF00524 PPV_E1_N: E1 Protein, N terminal domain; InterPro: IPR014000 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species Back     alignment and domain information
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated Back     alignment and domain information
>PRK12281 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>TIGR01956 NusG_myco NusG family protein Back     alignment and domain information
>COG0250 NusG Transcription antiterminator [Transcription] Back     alignment and domain information
>PTZ00194 60S ribosomal protein L26; Provisional Back     alignment and domain information
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>PTZ00194 60S ribosomal protein L26; Provisional Back     alignment and domain information
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00004 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function Back     alignment and domain information
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] Back     alignment and domain information
>KOG1708 consensus Mitochondrial/chloroplast ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1711
3h7h_B106 Crystal Structure Of The Human Transcription Elonga 1e-11
2exu_A200 Crystal Structure Of Saccharomyces Cerevisiae Trans 9e-08
3p8b_B152 X-Ray Crystal Structure Of Pyrococcus Furiosus Tran 2e-05
3qqc_D163 Crystal Structure Of Archaeal Spt45 BOUND TO THE RN 2e-05
>pdb|3H7H|B Chain B, Crystal Structure Of The Human Transcription Elongation Factor Dsif, Hspt4HSPT5 (176-273) Length = 106 Back     alignment and structure

Iteration: 1

Score = 70.1 bits (170), Expect = 1e-11, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 2/89 (2%) Query: 224 DPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAVDHIKGFIFIEADKQCDI 283 DP +W VKC G ER +A LM+KF+ Q + +QI S A +H+KG+I++EA KQ + Sbjct: 5 DPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHV 64 Query: 284 NEACKGLSGIY--YSRLAPVPKNEVSHLL 310 +A +G+ + Y VP E++ +L Sbjct: 65 KQAIEGVGNLRLGYWNQQMVPIKEMTDVL 93
>pdb|2EXU|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Transcription Elongation Factors Spt4-Spt5ngn Domain Length = 200 Back     alignment and structure
>pdb|3P8B|B Chain B, X-Ray Crystal Structure Of Pyrococcus Furiosus Transcription Elongation Factor Spt45 Length = 152 Back     alignment and structure
>pdb|3QQC|D Chain D, Crystal Structure Of Archaeal Spt45 BOUND TO THE RNAP CLAMP DOMAIN Length = 163 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1711
d1m1ha2101 N-utilization substance G protein NusG, N-terminal 99.24
d1nz8a_119 N-utilization substance G protein NusG, N-terminal 99.16
d2do3a162 Transcription elongation factor SPT5 {Human (Homo 98.38
d1nz9a_58 N-utilization substance G protein NusG, C-terminal 97.28
d1nppa258 N-utilization substance G protein NusG, C-terminal 97.27
d1nppa258 N-utilization substance G protein NusG, C-terminal 96.22
d1nz9a_58 N-utilization substance G protein NusG, C-terminal 95.88
d2do3a162 Transcription elongation factor SPT5 {Human (Homo 95.53
d1vqot1119 Ribosomal proteins L24 (L24p) {Archaeon Haloarcula 93.57
d1vqot1119 Ribosomal proteins L24 (L24p) {Archaeon Haloarcula 92.92
d2zjrr1110 Ribosomal proteins L24 (L24p) {Deinococcus radiodu 92.79
d2gycs199 Ribosomal proteins L24 (L24p) {Escherichia coli [T 89.21
d2zjrr1110 Ribosomal proteins L24 (L24p) {Deinococcus radiodu 87.43
d2j01y1101 Ribosomal proteins L24 (L24p) {Thermus thermophilu 83.37
>d1m1ha2 d.58.42.1 (A:5-50,A:132-186) N-utilization substance G protein NusG, N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: N-utilization substance G protein NusG, N-terminal domain
family: N-utilization substance G protein NusG, N-terminal domain
domain: N-utilization substance G protein NusG, N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]
Probab=99.24  E-value=4e-11  Score=90.06  Aligned_cols=86  Identities=15%  Similarity=0.242  Sum_probs=76.0

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE--CCCCCEEEEEECCCHHHHHHHCCCCCEEE-----C
Q ss_conf             9939999921623799999999999963058998758899981--79985799995050149998518998672-----1
Q 000294          224 DPTIWKVKCMAGRERQSAFCLMQKFVDLQSLGSKMQIISAFAV--DHIKGFIFIEADKQCDINEACKGLSGIYY-----S  296 (1711)
Q Consensus       224 DPkLWvVKCK~GkEReVV~~LmkKii~lq~~g~~L~I~SVFvp--d~lKGYIYIEA~kq~dV~eAI~GI~gVy~-----~  296 (1711)
                      +-+||+|+|++|+|+.|+..|++++....   ....|..|++|  +.|||||||++.+.++++++|+.+++|..     .
T Consensus         6 ~kkWYvv~t~Sg~E~kV~~~l~~~~~~~~---l~~~i~~v~VP~~klfPGYvfV~~~~~~~~~~~Ir~t~gV~~fvg~~~   82 (101)
T d1m1ha2           6 EKKWYALQVEPGKENEAKENLLKVLELEG---LKDLVDEVIVPANKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGG   82 (101)
T ss_dssp             CCEEEEEEECTTCHHHHHHHHHHHHHHTT---CGGGEEEEECSSCSSSTTEEEEEECCCHHHHHHHHTSTTEEEECEETT
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHCC---CHHHHHHHHCCCHHCCCCEEEEEEEECCHHHHHHHCCCCEEEECCCCC
T ss_conf             58679999378956999999999998718---056668786522103787799999747467899854998788268898


Q ss_pred             CCCCCCHHHHHHHHHC
Q ss_conf             0012699899997520
Q 000294          297 RLAPVPKNEVSHLLSA  312 (1711)
Q Consensus       297 k~~lVPikEM~dLLkv  312 (1711)
                      +|.||+.+||..+|..
T Consensus        83 ~P~pl~~~Ev~~il~~   98 (101)
T d1m1ha2          83 KPVPLKEEEVQNILNQ   98 (101)
T ss_dssp             EECEECHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
T ss_conf             4176999999999998



>d1nz8a_ d.58.42.1 (A:) N-utilization substance G protein NusG, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure