BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000295
(1711 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92621|NU205_HUMAN Nuclear pore complex protein Nup205 OS=Homo sapiens GN=NUP205 PE=1
SV=3
Length = 2012
Score = 204 bits (518), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 392/1706 (22%), Positives = 696/1706 (40%), Gaps = 324/1706 (18%)
Query: 137 GFVGGVRLAWAVHLMLIH---DEIAARE-TVSSSSSSELSNIRSCLETIFSNNVFQFLLD 192
G VRLAWA+ L I D A E T + + +EL+ ++NVF FL++
Sbjct: 324 GLQATVRLAWALALRGISQLPDVTALAEFTEADEAMAELA---------IADNVFLFLME 374
Query: 193 KALRTAAYQNDDEDMVYMNNAYLHKLITCFLSHQLARDKVKESKDKAMSVLNSYRIAGSH 252
+ + + ++ Y+ +H LIT FL+ L KVK+ +++A ++ I S
Sbjct: 375 SVVVSEYFYQEE---FYIRR--VHNLITDFLA--LMPMKVKQLRNRADE--DARMIHMSM 425
Query: 253 DFVHDSNLPSQQDTEIGPLPFVSLLEFVSEIYQKEP-------------ELLSGNDVLWT 299
++ + ++D E L+ + E+Y+K P E L ++ +
Sbjct: 426 QMGNEPPISLRRDLE-------HLMLLIGELYKKNPFHLELALEYWCPTEPLQTPTIMGS 478
Query: 300 FVVFAGEDHTNFQTL-----------------VAFLKMLSTLASSQEGASKVYELL---- 338
++ A + Q + + +LKML LA+ + A + LL
Sbjct: 479 YLGVAHQRPPQRQVVLSKFVRQMGDLLPPTIYIPYLKMLQGLANGPQCAHYCFSLLKVNG 538
Query: 339 -------QGKAFRSIGWRTLFDCLSIYDEKFKQSLQTGGAL----LPD--FQEGDAKALV 385
QG + W F L +Y E ++ L + ++ LP + + L+
Sbjct: 539 SSHVENIQGAGGSPVSWEHFFHSLMLYHEHLRKDLPSADSVQYRHLPSRGITQKEQDGLI 598
Query: 386 AYLNVLQKVM---ENGNS--IERKNWFPDIEPLFKLLSYENVPPYLKGALRNAIAACIHV 440
A+L + ++ EN E W P + L L ++PP LK L +AA
Sbjct: 599 AFLQLTSTIITWSENARLALCEHPQWTPVVVILGLLQC--SIPPVLKAELLKTLAA-FGK 655
Query: 441 SLVMKDNIWRLLEQYDLPVVVGTHVGNTAQ-PIAGQVYDMQFELNEIEARREQYPSTISF 499
S + ++W+ LE T + T + P Q ++ ELNEIE+R E+YP T +F
Sbjct: 656 SPEIAASLWQSLEY--------TQILQTVRIPSQRQAIGIEVELNEIESRCEEYPLTRAF 707
Query: 500 LNLLNALIAEEKDVSD-----RGRRFVGIFRFVYDHVFGPFPQRAYADPCEKWQLVVACL 554
L++ L+ E S+ R F +F+ D VF F RAY EKW++ L
Sbjct: 708 CQLISTLV-ESSFPSNLGAGLRPPGFDPYLQFLRDSVFLRFRTRAYRRAAEKWEVAEVVL 766
Query: 555 KHFHMILNMYDIQEEDIDNAVEQSSTLTQSSPIQMQLPVLELLKDFMSGKAVFRNIMGIL 614
+ F+ +L Y+ Q ED V+Q L I + P L+ ++ + + +L
Sbjct: 767 EVFYKLLRDYEPQLEDF---VDQFVELQGEEIIAYKPPGFSLMYHLLNESPMLELALSLL 823
Query: 615 QPGVDSIITERNNQIYGPL-----LEKAVQLSLEIVILVFEKDLLLSDFWR--------- 660
+ GV + T Y P LEKAVQ L ++ L +K+ L D R
Sbjct: 824 EEGVKQLDT------YAPFPGKKHLEKAVQHCLALLNLTLQKENLFMDLLRESQLALIVC 877
Query: 661 PLYQPVDVI--LSQDHNQIVALLEYVRY-DFLPQIQQCSIKIMSILSSRMVGLVQLLLKY 717
PL Q + I ++ + +V + Y+ + + P++ S KI+ +S ++L+ +
Sbjct: 878 PLEQLLQGINPRTKKADNVVNIARYLYHGNTNPELAFESAKILCCISCNSNIQIKLVGDF 937
Query: 718 NAASS----LVEDYAACLE-------LRSEESQIIEKS----GDDPGVLIMQLLIDNISR 762
S L+ + CL+ +R EE +EK + + I+ LLI ++
Sbjct: 938 THDQSISQKLMAGFVECLDCEDAEEFVRLEEGSELEKKLVAIRHETRIHILNLLITSLEC 997
Query: 763 PAPNITHLLLKFDLDTPIERTVLQ-------PKFHYSCLKIILEILEKVSKPDVNAL--- 812
PN+ LL F+L P+ T LQ P+ +CL IL ILEK ++ +
Sbjct: 998 NPPNLALYLLGFELKKPVSTTNLQDPGVLGCPR---TCLHAILNILEKGTEGRTGPVAVR 1054
Query: 813 ----LHEFGFQLLYELCLDPLTCGPTMDLLSNKKYQFFVKHLDAIGVAPLPKRNSNQALR 868
L E +Q++Y+LC T GPTM L + F L + SN+
Sbjct: 1055 ESPQLAELCYQVIYQLCACSDTSGPTMRYLRTSQ-DFLFSQLQYLPF-------SNKEYE 1106
Query: 869 ISSLHQRAWLLKLLAIELHAGYGSSSTHQEACQTILAHLF-----------GRDHIEDTD 917
IS L+Q +WL+K +IEL +S Q + L HL G IED +
Sbjct: 1107 ISMLNQMSWLMKTASIELRV---TSLNRQRSHTQRLLHLLLDDMPVKPYSDGEGGIEDEN 1163
Query: 918 RTLSLPFMVQNITEHAGTRTISKSKVLELLEVVQFRSPDTAMKLSQIVSNMKYDLL---- 973
R++S F+ H T T + K+L +L+ + F +I ++ D
Sbjct: 1164 RSVS-GFL------HFDTATKVRRKILNILDSIDFSQ--------EIPEPLQLDFFDRAQ 1208
Query: 974 AEEILGNPTTSGKGGIYYYSERGDRLIDLSSFSDKLWKKLNIVYPQLSNFGSEAELNDVK 1033
E+++ N + + RG + ++ L ++N L + + +
Sbjct: 1209 IEQVIAN--------CEHKNLRGQTVCNVKLLHRVLVAEVNA----LQGMAAIGQRPLLM 1256
Query: 1034 EAIQQLLRWGWKYNKNLEEQAAQLHMLTGWSQVVEV---SVSRRISALGNRSEILYQIL- 1089
E I +L++ NK L+ A+ H L W Q+VE+ + + + +R I+ IL
Sbjct: 1257 EEISTVLQYVVGRNKLLQCLHAKRHALESWRQLVEIILTACPQDLIQAEDRQLIIRDILQ 1316
Query: 1090 ---DACLGASASPDCSLRMA-FILCQVALTCMAKLRDEK-------------FLCPGGLN 1132
D L A+ + +A + A A L ++K F+
Sbjct: 1317 DVHDKILDDEAAQELMPVVAGAVFTLTAHLSQAVLTEQKETSVLGPAEAHYAFMLDSCFT 1376
Query: 1133 SDSVTFLDVIMVKQLSNGACHSLLFKLIMAILRNESS-EALRRRQYALLLSYFQYCQHML 1191
S ++ + + + + +L KL+ IL+ + +R Y LL Y Q Q
Sbjct: 1377 SPPPEENPLVGFASIGDSSLYIILKKLLDFILKTGGGFQRVRTHLYGSLLYYLQIAQRPD 1436
Query: 1192 APDVPTTVLQYLLLDEQDGEDLDLQKIDKEQAELTHANFSTLRKEAQAILDLFIKDATQG 1251
PD + + ED+ K+ +E N + + A++++ +DA G
Sbjct: 1437 EPDTLEAAKKTMWERLTAPEDV-FSKLQRE-------NIAIIESYGAALMEVVCRDACDG 1488
Query: 1252 SEPGKTLSLYVLDALICIDHEKYFLNQLQSRGFLRSCLMNVSNVSYQDGKRSLDT----- 1306
E G+ L+L +LD ++ +D ++ +L L + G+L+ V S + R+L +
Sbjct: 1489 HEIGRMLALALLDRIVSVDKQQQWLLYLSNSGYLK-----VLVDSLVEDDRTLQSLLTPQ 1543
Query: 1307 ---LQRACTLEAELALLLRISHKYGKSGAQVLFSMGSLEHIASCKAVGLQGSLRRVATKP 1363
L+ T E+++A L R++ + GA L G + +A C+ + R T P
Sbjct: 1544 PPLLKALYTYESKMAFLTRVAKI--QQGALELLRSGVIVRLAQCQVYDM-----RPETDP 1596
Query: 1364 RRALG---------GDIDRQRMIVTPMLRLVFSLTSLVDTSDFFEVKNKVVREVMDFIKG 1414
+ G +DR R I+ P L+L ++ TS + + +V+ F+
Sbjct: 1597 QSMFGMRDPPMFIPTPVDRYRQILLPALQLC----QVILTSSMAQ-HLQAAGQVLQFLIS 1651
Query: 1415 HQLLVDQVLQ-ENISEADELTMEQINLVVGILSK-VWP---------------YEESDEY 1457
H + +L+ +++S +++++ L+ GI+SK P E
Sbjct: 1652 HSDTIQAILRCQDVSAG---SLQELALLTGIISKAALPGILSELDVDVNEGSLMELQGHI 1708
Query: 1458 G-FVQGLFGMMSSLFSSD-LENLTFSQ---SARSLENQRKSELKKFQLCFSLSSYLYFMV 1512
G F + G++S SD L F + + + EL Q+C ++ Y ++
Sbjct: 1709 GRFQRQCLGLLSRFGGSDRLRQFKFQDDNVEGDKVSKKDEIELAMQQICANVMEYCQSLM 1768
Query: 1513 TKKSLRLQ-----VSRSLDDYNTNSGLQQLT---------LTSLG---SLLNSATAVLER 1555
+ S Q + SL + G +Q T L LG LL +
Sbjct: 1769 LQSSPTFQHAVCLFTPSLSETVNRDGPRQDTQAPVVPYWRLPGLGIIIYLLKQSANDFFS 1828
Query: 1556 AAEEKSLLLNKIRDINELSRQEVDEVIN--MCVREDYVSSSDNIQKRRYV-AMVEMCQVA 1612
+ ++K++++ +L E+ E+ M D +S++ ++YV A + +V
Sbjct: 1829 YYDSHRQSVSKLQNVEQLPPDEIKELCQSVMPAGVDKISTA-----QKYVLARRRLVKVI 1883
Query: 1613 GNRDQLITLLLLLTEHVLNVILIHFQ 1638
NR +L++L + E L ++ H +
Sbjct: 1884 NNRAKLLSLCSFIIETCLFILWRHLE 1909
>sp|Q6NKL5|RECF_CORDI DNA replication and repair protein RecF OS=Corynebacterium
diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype
gravis) GN=recF PE=3 SV=1
Length = 397
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 492 QYPSTISFLNLLN---------ALIAE-----EKDVSDRGRRFVGIFRFVYDHVFGPFPQ 537
+Y ST+ F +++ A++AE +K++ DRG VG R D V G +P
Sbjct: 232 RYVSTVPFADVVELPSPEEFEAAMLAELGQCRDKEI-DRGVSLVGPHRDDLDVVLGDYPA 290
Query: 538 RAYADPCEKWQLVVAC-LKHFHMILN--------MYDI-QEEDIDNAVEQSSTLTQSSPI 587
+ +A E W + ++ L FH++ N + D+ E D + S ++ +
Sbjct: 291 KGFASHGETWSMCLSLRLAEFHLLRNDGTDPVLILDDVFAELDTQRREKLVSVTAEAEQV 350
Query: 588 QMQLPVLELLKDFMSGKAVFRNIMGI 613
+ V + L D ++ AV R+ + +
Sbjct: 351 LITAAVGDDLPDTLTESAVHRHFVSV 376
>sp|E9L7A5|PAT_PETHY Bifunctional aspartate aminotransferase and
glutamate/aspartate-prephenate aminotransferase
OS=Petunia hybrida PE=1 SV=1
Length = 479
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 276 LLEFVSEIYQKEPELLSGNDVLWTFVVFAGEDHTNFQTLVAFLKMLSTLASSQEGASKVY 335
LLE ++EI + P LL +D ++ +++A HT+F +L T+ G S
Sbjct: 257 LLEQIAEIVARHPRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTV----NGFS--- 309
Query: 336 ELLQGKAFRSIGWR 349
KAF GWR
Sbjct: 310 -----KAFAMTGWR 318
>sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica
GN=DCL2B PE=2 SV=2
Length = 1377
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 1463 LFGMMSSL-FSSDLENLTFSQSARSLENQRKSELKKFQLCFSLSSYLYFMVTKKSLRLQV 1521
+FGM +SL +S DL +S+ +EN S++ +LS Y+ F TK
Sbjct: 197 IFGMSASLIYSKDLNQHNYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIV----- 251
Query: 1522 SRSLDDYNTNSGLQQLTLTSLGSLLNSATAVLERAAEEKSLLLNKIRDINELSRQEVDEV 1581
DD N +S L L+ L L L+R SL K R I++L R V +
Sbjct: 252 --HFDDSNISSELHANILSCLNRLTKKHIEALDRKLHGSSLENAKQR-ISKLHRTFVYCL 308
Query: 1582 INMCV 1586
N+ V
Sbjct: 309 YNLGV 313
>sp|Q9SIE1|PAT_ARATH Bifunctional aspartate aminotransferase and
glutamate/aspartate-prephenate aminotransferase
OS=Arabidopsis thaliana GN=PAT PE=1 SV=2
Length = 475
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 275 SLLEFVSEIYQKEPELLSGNDVLWTFVVFAGEDHTNFQTLVAFLKMLSTLASSQEGASKV 334
SLLE ++ I K P LL +D ++ +++A HT+F +L + T+ G S
Sbjct: 252 SLLEEIARIIAKHPRLLVLSDEIYEHIIYAPATHTSFASLPDMYERTLTV----NGFS-- 305
Query: 335 YELLQGKAFRSIGWR 349
KAF GWR
Sbjct: 306 ------KAFAMTGWR 314
>sp|A5FVN2|HIS8_ACICJ Histidinol-phosphate aminotransferase OS=Acidiphilium cryptum (strain
JF-5) GN=hisC PE=3 SV=1
Length = 364
Score = 35.0 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 1317 LALLLRISHKYGKSGAQVLFSM-GSLEHIASCKAVGLQGSLRRVATKPRRALGGDIDRQR 1375
+ALL++ YG G +++ S G L + + + G+ V P R L DID
Sbjct: 93 IALLIQ---SYGGPGTELVMSRHGFLIYEIAARLAGMN-----VRKAPERNLTADIDAML 144
Query: 1376 MIVTPMLRLVF------SLTSLVDTSDFFEVKNKVVREVMDFIKGHQLLVDQVLQENISE 1429
VTP RLVF SLV SD ++ ++ +V+ L++D E +
Sbjct: 145 AEVTPATRLVFLANPNNPTGSLVPASDVSRLRAELPPDVL-------LVLDAAYAEYVER 197
Query: 1430 AD 1431
AD
Sbjct: 198 AD 199
>sp|Q90977|E2F1_CHICK Transcription factor E2F1 OS=Gallus gallus GN=E2F1 PE=2 SV=1
Length = 403
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 1517 LRLQVSRSLDDYNTNSGLQQLTLTSLGSLLNSATAVLERAAEEKSLLLNKIRDINELSRQ 1576
L++Q R D N G+Q +T S ++ + V A+ + LL ++RD+ RQ
Sbjct: 137 LKVQKRRIYDITNVLEGIQLITKKSKNNIQWLGSQVAAGASSRQRLLEKELRDLQAAERQ 196
Query: 1577 EVDEVINMC-VREDYVSSSDNIQKRRYVAMVEMCQVAGNRDQLITLLLLLTEHVLNV 1632
+D++I C VR ++ + Q YV ++ + +Q++ ++ E L V
Sbjct: 197 -LDDLIQTCTVRLRLLTEDPSNQHAAYVTCQDLRSIVDPSEQMVMVIKAPPETQLQV 252
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,657,284
Number of Sequences: 539616
Number of extensions: 23653009
Number of successful extensions: 63850
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 63821
Number of HSP's gapped (non-prelim): 37
length of query: 1711
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1579
effective length of database: 120,340,147
effective search space: 190017092113
effective search space used: 190017092113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)