Query 000295
Match_columns 1711
No_of_seqs 194 out of 233
Neff 6.9
Searched_HMMs 13730
Date Tue Mar 26 16:05:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000295.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_75-78//hhsearch_scop/000295hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1upka_ a.118.1.15 (A:) Mo25 p 3.7 1E+02 0.0075 4.8 11.7 167 675-883 155-322 (330)
2 d1m7ja3 c.1.9.11 (A:62-419) N- 3.2 1.2E+02 0.009 4.3 0.6 22 168-189 104-125 (358)
3 d1bpoa1 a.118.1.4 (A:331-487) 2.8 1.4E+02 0.01 3.9 3.6 12 1417-1428 116-127 (157)
4 d1khda1 a.46.2.1 (A:12-80) Ant 2.6 1.6E+02 0.011 3.6 2.3 27 1561-1587 3-29 (69)
5 d2ieaa1 c.36.1.6 (A:471-700) P 2.4 1.7E+02 0.012 3.4 1.3 59 296-358 10-68 (230)
6 d1wpba_ a.233.1.1 (A:) Hypothe 2.3 1.8E+02 0.013 3.2 3.1 10 313-322 137-146 (168)
7 d1qdma1 a.64.1.2 (A:1S-104S) ( 2.3 1.8E+02 0.013 3.2 0.2 35 1225-1260 2-36 (104)
8 d1qcrd2 a.3.1.3 (D:167-195) Cy 2.2 1.9E+02 0.014 3.1 0.6 7 300-306 23-29 (29)
9 d1j3ea_ d.228.1.1 (A:) Replica 2.1 2E+02 0.014 3.0 2.8 37 228-289 2-38 (115)
10 d1u5ta1 a.4.5.54 (A:20-164) Va 2.1 2E+02 0.015 2.9 1.5 44 304-360 32-75 (145)
No 1
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.66 E-value=1e+02 Score=4.81 Aligned_cols=167 Identities=16% Similarity=0.232 Sum_probs=105.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 28999873414698403699999999998444566999983010157999999998511013100003689992799999
Q 000295 675 NQIVALLEYVRYDFLPQIQQCSIKIMSILSSRMVGLVQLLLKYNAASSLVEDYAACLELRSEESQIIEKSGDDPGVLIMQ 754 (1711)
Q Consensus 675 ~~I~~L~~Yv~~~~~p~lal~SikIL~~ls~r~~~lv~~l~~~~es~~I~~~Fv~~Le~~~~d~~~~e~~~~~~k~~IL~ 754 (1711)
+..-.+..||..+. -+++..|...++.+-.+.+.++.-+...+- +..-..|-..|+ .++.-+|..-+.
T Consensus 155 ~~f~~fF~yv~~~~-FdiasDAf~TfkelLt~hk~~~aefl~~Ny-d~Ff~~~~~LL~----------s~NYVtrRqSlK 222 (330)
T d1upka_ 155 EQFYDFFRYVEMST-FDIASDAFATFKDLLTRHKLLSAEFLEQHY-DRFFSEYEKLLH----------SENYVTKRQSLK 222 (330)
T ss_dssp GGGGHHHHHTTCSS-HHHHHHHHHHHHHHHHSSHHHHHHHHHHTH-HHHHHHHHHHTT----------CSSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHCHHHHHHHHHHHH-HHHHHHHHHHHC----------CCCHHHHHHHHH
T ss_conf 88999999973871-588898999999999708899999999849-999999999964----------884277998899
Q ss_pred HHHHCC-CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 999516-9999818776627744898754312489875419999999983179897423799999999995229998588
Q 000295 755 LLIDNI-SRPAPNITHLLLKFDLDTPIERTVLQPKFHYSCLKIILEILEKVSKPDVNALLHEFGFQLLYELCLDPLTCGP 833 (1711)
Q Consensus 755 lLl~nL-~~~~PniAHlLLGFdv~~~~~~~~l~p~~~~ScLhsIL~lL~~~~~~~~~p~L~e~~~~lL~~Lc~~p~TS~~ 833 (1711)
||-+-| ++. |..- +..-+ +...-|..+..+|... ...+.--+|+++.--.+||.-+.+
T Consensus 223 LLgelLldr~--N~~v-----------m~~Yv---s~~~nLkl~M~LLrd~-----sk~Iq~EAFhVFKvFVANpnKp~~ 281 (330)
T d1upka_ 223 LLGELLLDRH--NFTI-----------MTKYI---SKPENLKLMMNLLRDK-----SRNIQFEAFHVFKVFVANPNKTQP 281 (330)
T ss_dssp HHHHHHHSGG--GHHH-----------HHHHT---TCHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHHHH--HHHH-----------HHHHH---CCHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 9999986556--7999-----------99996---7888899999982173-----133779866585530118999779
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999412010599854110788999999842688999999999999999
Q 000295 834 TMDLLSNKKYQFFVKHLDAIGVAPLPKRNSNQALRISSLHQRAWLLKLLA 883 (1711)
Q Consensus 834 vL~~LRs~~~dff~~~L~~~~i~~lp~~~~~~~~~~s~L~~rs~lLk~~A 883 (1711)
+...|..++ +-+.+.+..-. +... .+. .|..-++++++-++
T Consensus 282 I~~IL~~Nr-~kLl~fl~~f~----~d~~-~De---qF~~EK~~lI~~I~ 322 (330)
T d1upka_ 282 ILDILLKNQ-AKLIEFLSKFQ----NDRT-EDE---QFNDEKTYLVKQIR 322 (330)
T ss_dssp HHHHHHHTH-HHHHHHHHHTT----TTC--CCS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHCC----CCCC-CHH---HHHHHHHHHHHHHH
T ss_conf 999999839-99999998678----8887-314---07899999999998
No 2
>d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]}
Probab=3.15 E-value=1.2e+02 Score=4.29 Aligned_cols=22 Identities=5% Similarity=0.270 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 0236879999999985471799
Q 000295 168 SSELSNIRSCLETIFSNNVFQF 189 (1711)
Q Consensus 168 ~~~~~~~~~~~~~Al~~~vF~F 189 (1711)
.++.+.+..++++|++.|||.|
T Consensus 104 ~~ei~~M~~ll~eal~~GA~G~ 125 (358)
T d1m7ja3 104 ADEIQAMQALADDALASGAIGI 125 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8999999999999996587652
No 3
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.81 E-value=1.4e+02 Score=3.89 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=4.5
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999830646
Q 000295 1417 LLVDQVLQENIS 1428 (1711)
Q Consensus 1417 ~li~~iLr~~~~ 1428 (1711)
++++.-++.+-+
T Consensus 116 ~lve~Wl~e~KL 127 (157)
T d1bpoa1 116 QLLEKWLKEDKL 127 (157)
T ss_dssp HHHHHHHHHTCS
T ss_pred HHHHHHHHCCCC
T ss_conf 999999983886
No 4
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=2.59 E-value=1.6e+02 Score=3.61 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=18.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 999997752210786629999841002
Q 000295 1561 SLLLNKIRDINELSRQEVDEVINMCVR 1587 (1711)
Q Consensus 1561 ~~~~~kl~~~~~L~~~e~~el~~~~~~ 1587 (1711)
..+.+|+.+..+|+.+|..++....+.
T Consensus 3 ~~il~kl~~g~~Ls~ee~~~~~~~i~~ 29 (69)
T d1khda1 3 QPILEKLFKSQSMTQEESHQLFAAIVR 29 (69)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 999999985999799999999999986
No 5
>d2ieaa1 c.36.1.6 (A:471-700) Pyruvate dehydrogenase E1 component, Pyr module {Escherichia coli [TaxId: 562]}
Probab=2.44 E-value=1.7e+02 Score=3.40 Aligned_cols=59 Identities=17% Similarity=0.356 Sum_probs=31.6
Q ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 210379773104888104999999998820890139999998407999853499999999999
Q 000295 296 VLWTFVVFAGEDHTNFQTLVAFLKMLSTLASSQEGASKVYELLQGKAFRSIGWRTLFDCLSIY 358 (1711)
Q Consensus 296 ~fWgFi~wa~~~~~~~~~~~afl~ML~sLa~g~~~A~~v~~~L~~~~~~~iSW~~iF~~L~~Y 358 (1711)
.|-.|.. .+++. ..+..+|-.||..|+++++-+.++--.... -.++.+-+-+|+.+..|
T Consensus 10 ~f~~~~~-~~~r~--iSTt~Af~riL~~L~rd~~lg~RiVpivPD-earTfgm~~~f~q~GIy 68 (230)
T d2ieaa1 10 DFGALLE-EQSKE--ISTTIAFVRALNVMLKNKSIKDRLVPIIAD-EARTFGMEGLFRQIGIY 68 (230)
T ss_dssp GGHHHHS-CCSSC--BCHHHHHHHHHHHHTTCTTTGGGEEEEESS-CSGGGTCHHHHHHHCBB
T ss_pred HHHHHHC-CCCCC--CCHHHHHHHHHHHHHCCCCCCCCEEEECCC-CCEECCHHHHHHHCCEE
T ss_conf 8888744-78851--129999999999996482323416664476-21104616655322003
No 6
>d1wpba_ a.233.1.1 (A:) Hypothetical protein YfbU {Escherichia coli [TaxId: 562]}
Probab=2.29 E-value=1.8e+02 Score=3.19 Aligned_cols=10 Identities=20% Similarity=0.394 Sum_probs=3.4
Q ss_pred HHHHHHHHHH
Q ss_conf 4999999998
Q 000295 313 TLVAFLKMLS 322 (1711)
Q Consensus 313 ~~~afl~ML~ 322 (1711)
|.-.|-.||+
T Consensus 137 m~~~Y~RML~ 146 (168)
T d1wpba_ 137 MWEKYQRMLN 146 (168)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 8999999999
No 7
>d1qdma1 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=2.29 E-value=1.8e+02 Score=3.18 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 579889999862447889884014689960599999
Q 000295 1225 LTHANFSTLRKEAQAILDLFIKDATQGSEPGKTLSL 1260 (1711)
Q Consensus 1225 l~~~~~~iI~~~ge~LidvIc~DA~~G~~~~r~~Al 1260 (1711)
++.+--.++..|++.+++.+-.+ .+.+.+|+.+.+
T Consensus 2 ls~eC~~~V~~Y~~~ii~~L~~~-~~P~~IC~~lgl 36 (104)
T d1qdma1 2 VSQECKTIVSQYGQQILDLLLAE-TQPKKICSQVGL 36 (104)
T ss_dssp CCHHHHHHHHHTHHHHHHHHHTT-CCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHCC
T ss_conf 55899999999999999999954-999999999487
No 8
>d1qcrd2 a.3.1.3 (D:167-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.24 E-value=1.9e+02 Score=3.11 Aligned_cols=7 Identities=43% Similarity=0.805 Sum_probs=0.0
Q ss_pred HHHHHHC
Q ss_conf 7977310
Q 000295 300 FVVFAGE 306 (1711)
Q Consensus 300 Fi~wa~~ 306 (1711)
|+.||++
T Consensus 23 FL~WaAE 29 (29)
T d1qcrd2 23 FLRWAAE 29 (29)
T ss_pred HHHHHCC
T ss_conf 9988629
No 9
>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=2.14 E-value=2e+02 Score=2.95 Aligned_cols=37 Identities=8% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 68899999997876422221106755556999987778888997689999999998135954
Q 000295 228 ARDKVKESKDKAMSVLNSYRIAGSHDFVHDSNLPSQQDTEIGPLPFVSLLEFVSEIYQKEPE 289 (1711)
Q Consensus 228 m~~kikelr~~~de~~~~~r~~~~~~~~~d~~~~~~~~~~~~~~~lE~fll~ia~~Y~~~P~ 289 (1711)
+++.++++-..++.+ .....-.|||.+.+.+|..+|+
T Consensus 2 ~~~~~~~ll~sde~a-------------------------~~~~av~RFl~iLs~Ly~~~~~ 38 (115)
T d1j3ea_ 2 LGSAMRELLLSDEYA-------------------------EQKRAVNRFMLLLSTLYSLDAQ 38 (115)
T ss_dssp HHHHHHHHHHSHHHH-------------------------HCCSHHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHCHH
T ss_conf 105899999189999-------------------------8761599999999999987989
No 10
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.13 E-value=2e+02 Score=2.93 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 310488810499999999882089013999999840799985349999999999999
Q 000295 304 AGEDHTNFQTLVAFLKMLSTLASSQEGASKVYELLQGKAFRSIGWRTLFDCLSIYDE 360 (1711)
Q Consensus 304 a~~~~~~~~~~~afl~ML~sLa~g~~~A~~v~~~L~~~~~~~iSW~~iF~~L~~Y~~ 360 (1711)
..+...||....-|.+|++++.-.|-. ..-+|.++++.=.+|++
T Consensus 32 ~~eI~~np~FR~~F~~MC~~iGVDPLa-------------s~~~~~~~lg~gDFYyE 75 (145)
T d1u5ta1 32 NSELQASPEFRSKFMHMCSSIGIDPLS-------------LFDRDKHLFTVNDFYYE 75 (145)
T ss_dssp TTTTTTCHHHHHHHHHHHHHHTCCHHH-------------HTTSSGGGTTHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCHHH-------------CCCCCCCCCCCCCHHHH
T ss_conf 887423989999999999992988122-------------27885302333305888
Done!