BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000298
(1706 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 19/201 (9%)
Query: 1427 FRDLRSRCCPSELAYIDSLSRCR--NWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFD 1484
FR+LR R + Y +S++R N D++G + + F+ T D RF+IK + +
Sbjct: 103 FRNLRERFGIDDQDYQNSVTRSAPINSDSQG-RCGTRFLTTYDRRFVIKTVSSEDVAEMH 161
Query: 1485 KFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFERNIT- 1543
Y +++ E GN T L + LG+Y++T+ G E MV+ F +T
Sbjct: 162 NILKKYHQFIVEC--HGN-TLLPQFLGMYRLTV----DGVET---YMVVTRNVFSHRLTV 211
Query: 1544 -RQYDLKGALHARYNTTVDGSGDV--LLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTT 1600
R+YDLKG+ AR + + + D+ D +F+N+ L+V +K+ + D
Sbjct: 212 HRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNE--GQKLHVGEESKKNFLEKLKRDVE 269
Query: 1601 FLNSIDVMDYSLLVGVDSQRR 1621
FL + +MDYSLLVG+ R
Sbjct: 270 FLAQLKIMDYSLLVGIHDVDR 290
>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
Length = 392
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 16/193 (8%)
Query: 1427 FRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKF 1486
FR+LR R + Y+ SL+R +++G + F+ + D +IKE+ +
Sbjct: 79 FRNLRDRFGIDDQDYLVSLTRNPPSESEGSDGR--FLISYDRTLVIKEVSSEDIADMHSN 136
Query: 1487 ALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQ 1545
+Y +Y+ + GN T L + LG+Y+V++ S ++VM N+ R + R+
Sbjct: 137 LSNYHQYIVKC--HGN-TLLPQFLGMYRVSVDNEDSY------MLVMRNMFSHRLPVHRK 187
Query: 1546 YDLKGALHARYNTTVDGSGDV--LLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLN 1603
YDLKG+L +R + + ++ L D +F+N + +Y+ K+I + D FL
Sbjct: 188 YDLKGSLVSREASDKEKVKELPTLRDMDFLN--KNQKVYIGEEEKKIFLEKLKRDVEFLV 245
Query: 1604 SIDVMDYSLLVGV 1616
+ +MDYSLL+G+
Sbjct: 246 QLKIMDYSLLLGI 258
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 71.6 bits (174), Expect = 4e-12, Method: Composition-based stats.
Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 14/227 (6%)
Query: 273 LLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGK-SLDLNSYIKVKCIAAGSRN 331
LLK +GK+ ES +++ L+ EA + DGK +DL++ IK + A
Sbjct: 154 LLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKK-DGKYVVDLDN-IKFEKKAGEGVE 211
Query: 332 QSQIIKGLVFKKHAAHKHMPTEYKNPR----------XXXXXXXXXXXXXXXXXFKAMEQ 381
+S++++G+V K H MP +N + +EQ
Sbjct: 212 ESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQ 271
Query: 382 EKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSP 441
E+ LK ++D I NVV V+K + Q + + G+ V +K +E++A+ TG+
Sbjct: 272 EEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAK 331
Query: 442 ILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEG 487
I+++ LT + L + + +K E+ F EG K P + I G
Sbjct: 332 IVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRG 378
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 71.6 bits (174), Expect = 4e-12, Method: Composition-based stats.
Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 14/227 (6%)
Query: 273 LLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGK-SLDLNSYIKVKCIAAGSRN 331
LLK +GK+ ES +++ L+ EA + DGK +DL++ IK + A
Sbjct: 154 LLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKK-DGKYVVDLDN-IKFEKKAGEGVE 211
Query: 332 QSQIIKGLVFKKHAAHKHMPTEYKNPR----------XXXXXXXXXXXXXXXXXFKAMEQ 381
+S++++G+V K H MP +N + +EQ
Sbjct: 212 ESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQ 271
Query: 382 EKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSP 441
E+ LK ++D I NVV V+K + Q + + G+ V +K +E++A+ TG+
Sbjct: 272 EEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAK 331
Query: 442 ILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEG 487
I+++ LT + L + + +K E+ F EG K P + I G
Sbjct: 332 IVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRG 378
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 71.6 bits (174), Expect = 4e-12, Method: Composition-based stats.
Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 14/227 (6%)
Query: 273 LLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGK-SLDLNSYIKVKCIAAGSRN 331
LLK +GK+ ES +++ L+ EA + DGK +DL++ IK + A
Sbjct: 154 LLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKK-DGKYVVDLDN-IKFEKKAGEGVE 211
Query: 332 QSQIIKGLVFKKHAAHKHMPTEYKNPR----------XXXXXXXXXXXXXXXXXFKAMEQ 381
+S++++G+V K H MP +N + +EQ
Sbjct: 212 ESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQ 271
Query: 382 EKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSP 441
E+ LK ++D I NVV V+K + Q + + G+ V +K +E++A+ TG+
Sbjct: 272 EEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAK 331
Query: 442 ILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEG 487
I+++ LT + L + + +K E+ F EG K P + I G
Sbjct: 332 IVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRG 378
>pdb|2YBX|A Chain A, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate
4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate
4-Kinase Type-2 Alpha
Length = 394
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 15/199 (7%)
Query: 1427 FRDLRSRCCPSELAYIDSLSRCRNW-DAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDK 1485
FR+LR R + + +SL+R + +S + F + D R+IIK I +
Sbjct: 87 FRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHN 146
Query: 1486 FALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITR 1544
Y +Y+ E T L + LG+Y++ + G E+ ++V N+ R ++ R
Sbjct: 147 ILKKYHQYIVEC---HGITLLPQFLGMYRLNV----DGVEIY--VIVTRNVFSHRLSVYR 197
Query: 1545 QYDLKGALHARYNTTVDGSGDV--LLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFL 1602
+YDLKG+ AR + + + ++ L D +F+N+ +Y+ + K++ + D FL
Sbjct: 198 KYDLKGSTVAREASDKEKAKELPTLKDNDFINE--GQKIYIDDNNKKVFLEKLKKDVEFL 255
Query: 1603 NSIDVMDYSLLVGVDSQRR 1621
+ +MDYSLLVG+ R
Sbjct: 256 AQLKLMDYSLLVGIHDVER 274
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 12/190 (6%)
Query: 314 LDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXXXXXXXXXXX- 372
+DL++ I++ A GS N +Q++ G+V K H MP +N +
Sbjct: 202 VDLDN-IQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPEL 260
Query: 373 ---------XXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLV 423
K +++E++ +K +D I NV++ +K + Q + +KG+ V
Sbjct: 261 DAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAV 320
Query: 424 FDMKLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTL 482
K LE++AR TG ++S+ ++ Q L + +K E+ F EG K P
Sbjct: 321 RRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNPKSIS 380
Query: 483 MFIEGCPTRL 492
+ I G RL
Sbjct: 381 ILIRGGLERL 390
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 58.2 bits (139), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 11/189 (5%)
Query: 310 DGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPR----------X 359
DGK++ + IKV GS N +Q I G+V K H MP KN +
Sbjct: 187 DGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIK 246
Query: 360 XXXXXXXXXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419
+ QE + K +++ I NVVL +K + Q + ++G
Sbjct: 247 KTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEG 306
Query: 420 MTLVFDMKLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRP 478
+ V +K +E++A+ TG+ I++ LT L ++ +K ++ F G K P
Sbjct: 307 IYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNP 366
Query: 479 SKTLMFIEG 487
+ I G
Sbjct: 367 KAVSILIRG 375
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 57.8 bits (138), Expect = 6e-08, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 106/240 (44%), Gaps = 24/240 (10%)
Query: 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR 330
+ L+K G +GK E++ + +++L+ +A S+ DG +++ IK++ A GS
Sbjct: 102 AALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSI 161
Query: 331 NQSQIIKGLVFKKHAAHKHMPTEYKNPR----------XXXXXXXXXXXXXXXXXFKAME 380
+ S++I GLV K +H +MP + +N + ++
Sbjct: 162 DDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLD 221
Query: 381 QEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGS 440
QE+ ++ + + + NVV +K + Q I + G+ V +K L+R+++ TG+
Sbjct: 222 QEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGA 281
Query: 441 PILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSLY 499
I+ +T++ + VEE GGK + ++ GC TV L+
Sbjct: 282 TIIQDLDQITTEDVG------TAGLVEEKE--VRGGK-----MTYVTGCQNSKAVTVLLH 328
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 95/212 (44%), Gaps = 26/212 (12%)
Query: 289 WVDIVTSLSWEAASSLRPG---SVDGK---SLDLNSYIKVKCIAAGSRNQSQIIKGLVFK 342
W + + L+ +A ++R +V+G+ +D+ Y++V+ I G S+++KG++
Sbjct: 167 WSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLN 226
Query: 343 KHAAHKHMPTEYKNPRXXXXXXXXXXXXXXXXXFKAMEQEKD----------QLKSVMDM 392
K H M +NPR +E+E+D Q++ + +
Sbjct: 227 KDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQ 286
Query: 393 IDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGSLTSQK 452
I P +V+ EK VS Q +L+ G +++ +K R+AR TG+ I++ +
Sbjct: 287 ILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNR----VED 342
Query: 453 LK------HCDSFYIKKFVEEHAGFREGGKRP 478
LK +C F ++ +E+ F + K P
Sbjct: 343 LKESDVGTNCGLFKVEMIGDEYFSFLDNCKEP 374
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 12/247 (4%)
Query: 252 EEKQRAMEKVVSGKFKAIVSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG 311
EE +R ++++ + + LLK + K D + +S+EA S+ DG
Sbjct: 131 EEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELR-DG 189
Query: 312 KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPR----------XXX 361
K I+V G+ + +Q+I G++ K H MP K+ +
Sbjct: 190 KYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKP 249
Query: 362 XXXXXXXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMT 421
K + QE++ L+ ++D I NVV+ +K + Q + G+
Sbjct: 250 EFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIY 309
Query: 422 LVFDMKLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSK 480
V +K ++++A+ TG+ I+S+ ++S L + K E++ F G K P
Sbjct: 310 AVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNPKA 369
Query: 481 TLMFIEG 487
+ + G
Sbjct: 370 VSILVRG 376
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 51/252 (20%), Positives = 107/252 (42%), Gaps = 18/252 (7%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSLRP 306
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 118 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV-- 175
Query: 307 GSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPR-------- 358
VD + IK++ + S + +++IKG++ K MP + + +
Sbjct: 176 --VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 233
Query: 359 --XXXXXXXXXXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESIL 416
+ +EQE+ LK ++ I NV+ +K + Q +
Sbjct: 234 EIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLA 293
Query: 417 EKGMTLVFDMKLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGG 475
++G+ +K +E++A+ TG+ ++++ +L++Q L +K + F E
Sbjct: 294 KEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEEC 353
Query: 476 KRPSKTLMFIEG 487
K P M I G
Sbjct: 354 KHPKAVTMLIRG 365
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 21/220 (9%)
Query: 289 WVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK 348
W + +++ +A +++ K +D+ Y +V+ I G S +++G++ K H
Sbjct: 156 WSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP 215
Query: 349 HMPTEYKNPRXXXXXXXXXXXXXXXXX----------FKAMEQEKDQLKSVMDMIDMCHP 398
M KNPR + ++ E++ ++ + + I P
Sbjct: 216 RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKP 275
Query: 399 NVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGSLTSQKLKHCDS 458
+VV+ EK +S Q ++ +T + ++ R+AR G+ I+S ++L+ D
Sbjct: 276 DVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSR----PEELREED- 330
Query: 459 FYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSL 498
V AG E K + FI C CT+ L
Sbjct: 331 ------VGTGAGLLEIKKIGDEYFTFITECKDPKACTILL 364
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 51/252 (20%), Positives = 107/252 (42%), Gaps = 18/252 (7%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSLRP 306
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 124 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV-- 181
Query: 307 GSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPR-------- 358
VD + IK++ + S + +++IKG++ K MP + + +
Sbjct: 182 --VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 239
Query: 359 --XXXXXXXXXXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESIL 416
+ +EQE+ LK ++ I NV+ +K + Q +
Sbjct: 240 EIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLA 299
Query: 417 EKGMTLVFDMKLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGG 475
++G+ +K +E++A+ TG+ ++++ +L++Q L +K + F E
Sbjct: 300 KEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEEC 359
Query: 476 KRPSKTLMFIEG 487
K P M I G
Sbjct: 360 KHPKAVTMLIRG 371
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 51/252 (20%), Positives = 106/252 (42%), Gaps = 18/252 (7%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSLRP 306
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 118 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV-- 175
Query: 307 GSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPR-------- 358
VD + IK++ + S + +++IKG++ K MP + + +
Sbjct: 176 --VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 233
Query: 359 --XXXXXXXXXXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESIL 416
+ +EQE+ LK ++ I NV+ +K + Q +
Sbjct: 234 EIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLA 293
Query: 417 EKGMTLVFDMKLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGG 475
++G+ +K +E++A+ TG+ ++++ L++Q L +K + F E
Sbjct: 294 KEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEEC 353
Query: 476 KRPSKTLMFIEG 487
K P M I G
Sbjct: 354 KHPKAVTMLIRG 365
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 51/252 (20%), Positives = 106/252 (42%), Gaps = 18/252 (7%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSLRP 306
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 124 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV-- 181
Query: 307 GSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPR-------- 358
VD + IK++ + S + +++IKG++ K MP + + +
Sbjct: 182 --VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 239
Query: 359 --XXXXXXXXXXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESIL 416
+ +EQE+ LK ++ I NV+ +K + Q +
Sbjct: 240 EIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLA 299
Query: 417 EKGMTLVFDMKLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGG 475
++G+ +K +E++A+ TG+ ++++ L++Q L +K + F E
Sbjct: 300 KEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEEC 359
Query: 476 KRPSKTLMFIEG 487
K P M I G
Sbjct: 360 KHPKAVTMLIRG 371
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 47.0 bits (110), Expect = 9e-05, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 103/242 (42%), Gaps = 20/242 (8%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSLRP 306
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 118 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV-- 175
Query: 307 GSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXXXXX 366
VD + IK++ + S + +++IKG++ K MP + + +
Sbjct: 176 --VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 233
Query: 367 XXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDM 426
E + LK ++ I NV+ +K + Q + ++G+ +
Sbjct: 234 E------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 281
Query: 427 KLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485
K +E++A+ TG+ ++++ +L++Q L +K + F E K P M I
Sbjct: 282 KKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLI 341
Query: 486 EG 487
G
Sbjct: 342 RG 343
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 102/242 (42%), Gaps = 20/242 (8%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSLRP 306
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 118 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV-- 175
Query: 307 GSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXXXXX 366
VD + IK++ + S + +++IKG++ K MP + + +
Sbjct: 176 --VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 233
Query: 367 XXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDM 426
E + LK ++ I NV+ +K + Q + ++G+ +
Sbjct: 234 E------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 281
Query: 427 KLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485
K +E++A+ TG+ ++++ L++Q L +K + F E K P M I
Sbjct: 282 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLI 341
Query: 486 EG 487
G
Sbjct: 342 RG 343
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 102/242 (42%), Gaps = 20/242 (8%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSLRP 306
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 124 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV-- 181
Query: 307 GSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXXXXX 366
VD + IK++ + S + +++IKG++ K MP + + +
Sbjct: 182 --VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 239
Query: 367 XXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDM 426
E + LK ++ I NV+ +K + Q + ++G+ +
Sbjct: 240 E------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 287
Query: 427 KLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485
K +E++A+ TG+ ++++ L++Q L +K + F E K P M I
Sbjct: 288 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLI 347
Query: 486 EG 487
G
Sbjct: 348 RG 349
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 102/242 (42%), Gaps = 20/242 (8%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSLRP 306
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 118 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV-- 175
Query: 307 GSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXXXXX 366
VD + IK++ + S + +++IKG++ K MP + + +
Sbjct: 176 --VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 233
Query: 367 XXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDM 426
E + LK ++ I NV+ +K + Q + ++G+ +
Sbjct: 234 E------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 281
Query: 427 KLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485
K +E++A+ TG+ ++++ L++Q L +K + F E K P M I
Sbjct: 282 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLI 341
Query: 486 EG 487
G
Sbjct: 342 RG 343
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 38.5 bits (88), Expect = 0.037, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 377 KAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVAR 436
K + QE++ L+ ++D I NVV+ +K + Q + G+ V +K ++++A+
Sbjct: 52 KFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAK 111
Query: 437 CTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGK 476
TG+ I+S+ ++S L + K E++ F G K
Sbjct: 112 ATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGSK 152
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 38.1 bits (87), Expect = 0.039, Method: Composition-based stats.
Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 21/176 (11%)
Query: 333 SQIIKGLVFKKHAAHKHMPTEYKNPR----------XXXXXXXXXXXXXXXXXFKAMEQE 382
S +++G++ K H M KNPR + ++ E
Sbjct: 4 SCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQME 63
Query: 383 KDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPI 442
++ + + + I P+VV+ EK +S Q ++ +T + ++ R+AR G+ I
Sbjct: 64 EEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARI 123
Query: 443 LSSGSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSL 498
+S ++L+ D V AG E K + FI C CT+ L
Sbjct: 124 VSR----PEELREDD-------VGTGAGLLEIKKIGDEYFTFITDCKDPKACTILL 168
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 36.2 bits (82), Expect = 0.16, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 11/152 (7%)
Query: 336 IKGLVFKKHAAHKHMPTEYKNPR----------XXXXXXXXXXXXXXXXXFKAMEQEKDQ 385
+ G+V K H MP KN + + QE +
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 386 LKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSS 445
K +++ I NVVL +K + Q + ++G+ V +K +E++A+ TG+ I++
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 446 -GSLTSQKLKHCDSFYIKKFVEEHAGFREGGK 476
LT L ++ +K ++ F G K
Sbjct: 121 LDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 152
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 27/193 (13%)
Query: 320 IKVKCIAAGSRNQSQIIKGLVFKK---HAAHKHMPTEYKNP---------RXXXXXXXXX 367
I +K + G+ +SQ++ G+ FKK +A + P +Y NP
Sbjct: 186 IGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAE 245
Query: 368 XXXXXXXXFKAM-EQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDM 426
++A+ + E + L ++ I VVL + + + ++ M +
Sbjct: 246 IRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRV 305
Query: 427 KLHRLER-VARCTGSPILSSGSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485
L+R + C GS S +L+S L C F EE + GG+R + F
Sbjct: 306 PEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVF------EET---QIGGERYN----FF 352
Query: 486 EGCPTRLGCTVSL 498
GCP CT+ L
Sbjct: 353 TGCPKAKTCTIIL 365
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR+ +CG +DYL
Sbjct: 127 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDTLCGTLDYL 174
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 152 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYL 199
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR+ +CG +DYL
Sbjct: 152 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYL 199
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 143 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYL 190
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 128 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYL 175
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 131 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYL 178
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR+ +CG +DYL
Sbjct: 130 SKRVIHRDIKPENLLLGSNGELKIADFGWSVHAPSSRRDTLCGTLDYL 177
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 129 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYL 176
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 131 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYL 178
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 131 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYL 178
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 126 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYL 173
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 129 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYL 176
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 126 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYL 173
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 271 SQLLKSVG-VVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSL---DLNSYIKVKCIA 326
++LLK + V+SS K G DI++ L EA S + P + + +++S I+V I
Sbjct: 157 NELLKMIKPVISSKKYGSE--DILSELVSEAVSHVLPVAQQAGEIPYFNVDS-IRVVKIM 213
Query: 327 AGSRNQSQIIKGLVFKK 343
GS + S +IKG+VF +
Sbjct: 214 GGSLSNSTVIKGMVFNR 230
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 129 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYL 176
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 126 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTXLCGTLDYL 173
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By A
Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine Aurora
Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 130 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYL 177
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole Inhibitor
Length = 268
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 126 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYL 173
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea Inhibitor
Length = 267
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 125 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYL 172
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 129 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYL 176
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic
Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic
Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR+ +CG +DYL
Sbjct: 129 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYL 176
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With [7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 130 SKRVIHRDIKPENLLLGSNGELKIADFGWSVHAPSSRRTTLCGTLDYL 177
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 1587 AKRILQRAVWNDTTFLNS---IDVMDYSLLVGVDSQRRELVCGIIDYL 1631
+KR++ R + + L S + + D+ V S RR +CG +DYL
Sbjct: 123 SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYL 170
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 30.8 bits (68), Expect = 7.1, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 62/145 (42%), Gaps = 11/145 (7%)
Query: 320 IKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXX---------XXXXXXXXXX 370
IKV+ G +++IKG++ K +H MP + ++ +
Sbjct: 187 IKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDV 246
Query: 371 XXXXXFKAMEQ-EKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLH 429
FKA+++ EK++ + ++ I N+ + + + +L+ + V +
Sbjct: 247 TSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGP 306
Query: 430 RLERVARCTGSPILSSGS-LTSQKL 453
+E +A TG I+ S LT++KL
Sbjct: 307 EIELIAIATGGRIVPRFSELTAEKL 331
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,523,523
Number of Sequences: 62578
Number of extensions: 1976975
Number of successful extensions: 4397
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 4340
Number of HSP's gapped (non-prelim): 75
length of query: 1706
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1594
effective length of database: 7,964,601
effective search space: 12695573994
effective search space used: 12695573994
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)