Query 000298
Match_columns 1706
No_of_seqs 364 out of 1750
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 03:21:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0230 Phosphatidylinositol-4 100.0 2E-237 4E-242 2209.0 83.1 1324 189-1686 232-1597(1598)
2 cd00139 PIPKc Phosphatidylinos 100.0 2.4E-67 5.2E-72 612.3 29.0 256 1413-1676 53-313 (313)
3 COG5253 MSS4 Phosphatidylinosi 100.0 1.8E-68 4E-73 619.6 13.7 359 1294-1686 242-607 (612)
4 smart00330 PIPKc Phosphatidyli 100.0 6.7E-66 1.5E-70 607.1 27.6 258 1409-1675 22-342 (342)
5 KOG0229 Phosphatidylinositol-4 100.0 9E-58 2E-62 532.0 22.4 252 1414-1676 95-420 (420)
6 PF01504 PIP5K: Phosphatidylin 100.0 4.8E-56 1E-60 506.8 18.8 222 1444-1675 2-252 (252)
7 PLN03185 phosphatidylinositol 100.0 1.3E-54 2.9E-59 545.1 27.9 248 1414-1676 401-765 (765)
8 cd03334 Fab1_TCP TCP-1 like do 100.0 1.5E-46 3.2E-51 431.2 27.3 255 268-561 2-261 (261)
9 TIGR02344 chap_CCT_gamma T-com 100.0 4.6E-40 9.9E-45 411.5 25.2 256 271-566 145-413 (525)
10 TIGR02339 thermosome_arch ther 100.0 2E-37 4.4E-42 387.2 29.6 255 271-566 145-412 (519)
11 KOG0364 Chaperonin complex com 100.0 2.6E-38 5.7E-43 364.4 14.6 254 271-566 148-413 (527)
12 cd03343 cpn60 cpn60 chaperonin 100.0 4.6E-37 1E-41 384.0 26.1 255 271-566 144-409 (517)
13 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.1E-36 2.4E-41 381.1 28.4 256 270-566 153-419 (526)
14 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.2E-35 2.5E-40 372.0 26.7 255 271-566 138-410 (527)
15 cd03340 TCP1_eta TCP-1 (CTT or 100.0 4.6E-35 1E-39 366.3 28.4 249 271-566 149-411 (522)
16 cd03333 chaperonin_like chaper 100.0 4.2E-35 9.2E-40 326.0 23.6 206 272-553 3-209 (209)
17 TIGR02343 chap_CCT_epsi T-comp 100.0 6.9E-35 1.5E-39 365.0 28.2 255 271-566 158-423 (532)
18 PTZ00212 T-complex protein 1 s 100.0 4.9E-35 1.1E-39 366.5 26.4 249 270-566 158-418 (533)
19 cd03338 TCP1_delta TCP-1 (CTT 100.0 7.4E-35 1.6E-39 364.0 26.1 254 271-566 137-408 (515)
20 TIGR02342 chap_CCT_delta T-com 100.0 1.3E-34 2.9E-39 361.6 26.6 254 271-566 138-409 (517)
21 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2.4E-34 5.3E-39 359.2 28.4 249 270-566 146-406 (517)
22 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1.2E-34 2.5E-39 359.2 22.5 225 271-566 145-372 (480)
23 TIGR02340 chap_CCT_alpha T-com 100.0 8E-34 1.7E-38 356.0 27.4 256 271-567 142-415 (536)
24 TIGR02347 chap_CCT_zeta T-comp 100.0 7.9E-34 1.7E-38 355.0 26.9 252 271-566 146-418 (531)
25 TIGR02345 chap_CCT_eta T-compl 100.0 6.6E-34 1.4E-38 355.7 25.0 250 271-566 149-412 (522)
26 TIGR02341 chap_CCT_beta T-comp 100.0 3.7E-32 8E-37 339.6 26.6 248 271-566 148-407 (519)
27 KOG0361 Chaperonin complex com 100.0 4.1E-32 8.9E-37 308.5 15.7 249 272-567 154-416 (543)
28 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 2.6E-31 5.7E-36 329.6 23.6 232 271-566 142-375 (484)
29 cd00309 chaperonin_type_I_II c 100.0 3.3E-31 7E-36 327.6 23.2 221 271-566 137-358 (464)
30 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.4E-30 3E-35 322.6 26.6 249 271-566 117-377 (485)
31 TIGR02346 chap_CCT_theta T-com 100.0 1.7E-30 3.6E-35 325.6 25.4 250 271-566 149-410 (531)
32 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.3E-29 5E-34 311.5 23.4 223 270-566 138-362 (472)
33 KOG0358 Chaperonin complex com 100.0 1.1E-29 2.5E-34 288.4 14.5 256 270-566 154-426 (534)
34 KOG0363 Chaperonin complex com 100.0 1.4E-28 3.1E-33 278.3 17.7 267 252-566 130-411 (527)
35 KOG0359 Chaperonin complex com 99.9 2.9E-28 6.4E-33 281.5 11.7 253 270-566 142-409 (520)
36 COG0459 GroL Chaperonin GroEL 99.9 9.1E-27 2E-31 289.0 21.6 245 275-566 142-406 (524)
37 KOG0360 Chaperonin complex com 99.9 1.7E-27 3.7E-32 277.9 13.7 255 271-566 149-420 (545)
38 PRK00013 groEL chaperonin GroE 99.9 2.8E-22 6.1E-27 251.6 24.8 247 271-566 141-420 (542)
39 PRK12849 groEL chaperonin GroE 99.9 3.3E-22 7.1E-27 251.0 24.9 236 271-566 141-420 (542)
40 cd03344 GroEL GroEL_like type 99.9 2.2E-22 4.7E-27 251.8 23.0 240 270-566 138-418 (520)
41 KOG0362 Chaperonin complex com 99.9 3.4E-22 7.3E-27 235.6 21.3 232 289-567 171-414 (537)
42 PTZ00114 Heat shock protein 60 99.9 7.6E-22 1.7E-26 248.6 25.4 239 271-566 153-433 (555)
43 PRK12851 groEL chaperonin GroE 99.9 7.1E-22 1.5E-26 248.1 22.9 245 271-566 142-421 (541)
44 TIGR02348 GroEL chaperonin Gro 99.9 1.1E-21 2.3E-26 246.0 23.8 246 271-566 140-419 (524)
45 PRK12850 groEL chaperonin GroE 99.9 1.7E-21 3.6E-26 244.9 22.8 245 270-566 141-421 (544)
46 PRK12852 groEL chaperonin GroE 99.9 1.4E-20 3.1E-25 236.9 24.2 239 271-566 142-421 (545)
47 CHL00093 groEL chaperonin GroE 99.8 4.3E-20 9.4E-25 231.8 22.6 248 271-566 141-420 (529)
48 PRK14104 chaperonin GroEL; Pro 99.8 2.1E-19 4.5E-24 226.1 24.8 220 271-566 142-421 (546)
49 PLN03167 Chaperonin-60 beta su 99.8 4E-20 8.7E-25 234.0 15.3 246 271-566 196-475 (600)
50 KOG0357 Chaperonin complex com 99.7 1.3E-18 2.8E-23 197.5 7.7 143 386-566 144-287 (400)
51 KOG0230 Phosphatidylinositol-4 95.5 0.012 2.6E-07 79.8 4.7 100 808-922 658-757 (1598)
52 KOG0356 Mitochondrial chaperon 87.6 1.7 3.7E-05 55.1 8.5 229 295-566 173-435 (550)
53 cd01143 YvrC Periplasmic bindi 57.3 26 0.00055 38.6 6.8 51 390-440 53-110 (195)
54 TIGR03659 IsdE heme ABC transp 51.7 26 0.00056 41.7 6.1 52 390-441 84-141 (289)
55 cd01144 BtuF Cobalamin binding 50.8 35 0.00076 39.1 6.8 52 390-441 50-108 (245)
56 PLN02667 inositol polyphosphat 49.3 28 0.0006 42.1 5.7 71 1465-1550 23-100 (286)
57 PRK09534 btuF corrinoid ABC tr 48.4 35 0.00076 42.2 6.7 52 390-441 112-170 (359)
58 PF02579 Nitro_FeMo-Co: Dinitr 47.1 54 0.0012 32.0 6.5 49 388-437 44-92 (94)
59 cd01138 FeuA Periplasmic bindi 40.9 50 0.0011 38.0 6.0 50 390-440 59-112 (248)
60 cd00851 MTH1175 This uncharact 40.5 59 0.0013 32.3 5.8 40 387-427 53-92 (103)
61 PF01497 Peripla_BP_2: Peripla 37.1 75 0.0016 36.0 6.6 51 391-441 54-112 (238)
62 cd01141 TroA_d Periplasmic bin 35.8 74 0.0016 35.0 6.2 50 390-439 62-119 (186)
63 cd01146 FhuD Fe3+-siderophore 34.5 84 0.0018 36.4 6.6 52 390-441 58-115 (256)
64 cd00562 NifX_NifB This CD repr 33.1 93 0.002 30.8 5.8 39 388-427 52-90 (102)
65 PF06296 DUF1044: Protein of u 32.9 1.4E+02 0.0031 31.8 7.2 77 1420-1496 2-106 (120)
66 PRK03379 vitamin B12-transport 32.1 79 0.0017 37.2 5.9 50 390-440 65-122 (260)
67 PF13324 GCIP: Grap2 and cycli 31.1 77 0.0017 37.9 5.6 14 286-299 223-236 (275)
68 KOG2023 Nuclear transport rece 29.7 1.1E+02 0.0023 40.7 6.7 37 249-291 373-409 (885)
69 cd01140 FatB Siderophore bindi 27.2 1.2E+02 0.0025 35.5 6.2 52 390-441 65-123 (270)
70 cd01147 HemV-2 Metal binding p 26.9 83 0.0018 36.4 4.9 51 390-440 67-126 (262)
71 cd01139 TroA_f Periplasmic bin 26.6 1.1E+02 0.0023 37.3 5.9 52 390-441 84-148 (342)
72 PRK11411 fecB iron-dicitrate t 26.0 1.4E+02 0.0029 35.9 6.6 52 390-441 94-152 (303)
73 cd00636 TroA-like Helical back 25.6 95 0.002 31.4 4.5 35 390-424 54-88 (148)
74 cd01149 HutB Hemin binding pro 25.6 1.4E+02 0.003 34.3 6.2 51 390-440 51-109 (235)
75 PF07450 HycH: Formate hydroge 24.9 58 0.0013 35.0 2.7 22 1605-1633 24-45 (131)
76 cd04743 NPD_PKS 2-Nitropropane 24.7 1.9E+02 0.004 35.8 7.3 56 387-443 72-127 (320)
77 COG1997 RPL43A Ribosomal prote 22.9 63 0.0014 32.5 2.4 43 803-875 32-74 (89)
78 PF12226 Astro_capsid_p: Turke 22.7 50 0.0011 36.6 1.8 54 1416-1475 99-155 (230)
79 COG0614 FepB ABC-type Fe3+-hyd 22.6 1.5E+02 0.0033 35.2 6.1 52 390-441 108-165 (319)
80 PRK15084 formate hydrogenlyase 22.4 65 0.0014 34.6 2.5 22 1605-1633 26-47 (133)
81 COG1433 Uncharacterized conser 21.6 2.6E+02 0.0056 29.9 6.8 52 388-440 56-107 (121)
82 PHA02682 ORF080 virion core pr 20.9 1.4E+02 0.003 34.0 4.7 66 931-1003 192-257 (280)
83 PF04810 zf-Sec23_Sec24: Sec23 20.9 56 0.0012 28.0 1.4 32 4-47 4-35 (40)
No 1
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-237 Score=2208.96 Aligned_cols=1324 Identities=41% Similarity=0.659 Sum_probs=969.4
Q ss_pred CCCccCCC--cccCCCCCCCCcccccccccCCCCCcccCCCCCCccc---cCCCCcccccCCCcccchHHHHHHHHHHHH
Q 000298 189 NDNEMDMQ--IWEPPEPEDPEDDIEGSIAYNDDDEDEECGDGTKWGK---PSSLSHFRDEGGGRLKFKEEKQRAMEKVVS 263 (1706)
Q Consensus 189 ~~~d~~~~--~w~pp~p~~~~d~~~~~~~~~ddd~~~~~~~~~~~~~---~ss~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (1706)
+++||+++ +|.||+||+|+||+|+.++|+||+++| .++.|+. +.+++.+.....+ +..++..++|+.+..
T Consensus 232 ~~~d~~~~~~~~~p~~pene~dd~~~~~~~~~~~~~D---~~~~~~~~~~s~s~s~~~~~~~~--~~~ee~~~~m~~~~~ 306 (1598)
T KOG0230|consen 232 EILDFENNGLLWEPPEPENEEDDAESVLADDDDDEGD---TSGKWNPLRLSNSFSAPEYKSKD--KSAEEDEKVMRNVVE 306 (1598)
T ss_pred cccchhhccCCCCCCCCCcccccchhccccccccccc---cccccccccccCccCCCCccccc--cchhhcchhhhcccc
Confidence 78999999 999999999999999988675554433 2367876 5778887444444 688899999999999
Q ss_pred HHHHHHHHHHHHhhcccCCC-CCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEe
Q 000298 264 GKFKAIVSQLLKSVGVVSSG-KDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFK 342 (1706)
Q Consensus 264 ~h~~~lv~qLL~~~~~sl~s-K~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~ 342 (1706)
.||++++.||++.+.+++.. ....+|.++++.|+|+|+..++|+.+.|+.|||.+|||||||+||++.||++|+||||+
T Consensus 307 ~~fr~~~a~Llr~~~ls~~~d~~~~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~s 386 (1598)
T KOG0230|consen 307 SHFRALVAQLLRSENLSVVMDGAHQEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCS 386 (1598)
T ss_pred chHHHHHHHHhcccCcCccccchhhhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEee
Confidence 99999999999999998443 34568999999999999999999999899999999999999999999999999999999
Q ss_pred ecCCCCCCCccccCCcEEEEeeecccCccc--ccchhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcC
Q 000298 343 KHAAHKHMPTEYKNPRLLLIRGVLGLSSSG--LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1706)
Q Consensus 343 Knvahk~M~~~i~nPRILLL~~~LEy~r~~--lsSle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~g 419 (1706)
|+++||.|++++++|||||+.|+|||+|.. |+|+++ ++||++||+.+|+||.+.+||||||+|+|+++||++|.++|
T Consensus 387 Kn~~~k~M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~ 466 (1598)
T KOG0230|consen 387 KNVAHKRMATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKG 466 (1598)
T ss_pred cchhhhhhhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccC
Confidence 999999999999999999999999999876 999999 99999999999999999999999999999999999999999
Q ss_pred CeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCccccccC
Q 000298 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSL 498 (1706)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~~ 498 (1706)
|+++.|||++.|+||||||||+|++|+| |+.++||+|+.|++++++++| +..||||||+||++++|||
T Consensus 467 I~lvlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~h--------k~sKTlmffegc~~~lG~T--- 535 (1598)
T KOG0230|consen 467 ISLVLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEH--------KPSKTLMFFEGCPKPLGCT--- 535 (1598)
T ss_pred eEEEEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcc--------cchhhhHHhhcCCCCCCce---
Confidence 9999999999999999999999999999 999999999999999999876 4679999999999999999
Q ss_pred CcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeeccCCcccc-ccCCC
Q 000298 499 YPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTIPFAEV-AGILP 577 (1706)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~~~~~~~-~~~~~ 577 (1706)
|||||+..++|++||+|++++++++||+.||++|++|.||+++....... +..++
T Consensus 536 ------------------------iLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~~~~~~~~~~~~~~ 591 (1598)
T KOG0230|consen 536 ------------------------ILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASISSPKLSIPTSVETS 591 (1598)
T ss_pred ------------------------EEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccccccccceeccc
Confidence 99999999999999999999999999999999999999999886433221 11111
Q ss_pred ccccccccccCCCCCcccccCcccCCCCCcCCCCCCCCcCCCCCcCCCCCCCceeeccCCCCccccCccccccccccccc
Q 000298 578 MEQQHPALENGNSNVSCFEHSSVESGSSTMDIPISNGFHEDGSYANSGPEGESILSYEPYNPAVFSGFSSLSASLRKVIG 657 (1706)
Q Consensus 578 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~~l~~~~~ 657 (1706)
+... +.+.+|....+..+......+....+.|. .....++++..|+..
T Consensus 592 ~~~~------~~s~~~~~t~st~~~a~~~~~~~e~~~~~--------~~~~~~~ls~sp~~~------------------ 639 (1598)
T KOG0230|consen 592 IINR------SISTSPGETDSTAEKAPVEALQVEPNRFN--------GALSSELLSSSPFLE------------------ 639 (1598)
T ss_pred cccc------ccccCCCCCcchhcccchhhhccchhhhh--------cccccceeecccccc------------------
Confidence 1000 11111111111000000000000000010 000122222222100
Q ss_pred cCCCCcccccC----C-CccccccccccccccccccC--CCccccccccCCCCCCccCCCCCccccccCCCCCCCCCC--
Q 000298 658 DNFPLSSAAAY----P-SLTSYFGFRGREQSGQITED--VPVSTIMDASLDGPCDTEAKSSSDEEKSLDGQPTSLPSC-- 728 (1706)
Q Consensus 658 ~~~P~~~~~~~----~-~l~~~~~~~~re~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~-- 728 (1706)
...|+...+++ . .+..+.. +.....+... ...+.++.. ..+.. ++++..+...
T Consensus 640 ~~~~~~~i~P~~~~~e~~~~~~~~---~~~~~~lv~~~es~~~~~~~s---~~~~~------------~~l~e~~~~~~~ 701 (1598)
T KOG0230|consen 640 FPLDLLEIAPGELVIETRLSSYSK---GPKQNGLVPAHESVLNDLHES---TLSIL------------SKLPETRSGTHE 701 (1598)
T ss_pred cCCCccccCCccceeecchhhhcC---chhhccccccccccccccccc---ccccc------------ccccchhcccch
Confidence 01111100000 0 0000000 0000000000 000000000 00000 0000000000
Q ss_pred ---CCCCCC--CCCCCCCC----CcccCCccccCCCCCCCeEEEEEeeccCCCCCccCCccEEEEeccCCCCccHHHHHH
Q 000298 729 ---PEAPLS--MGKDCGND----EDHSQSQEDANASLDSQSILVLMSSRNALRGTICEQSHFSHIMFYKNFDVPLGKFLQ 799 (1706)
Q Consensus 729 ---~~~~~~--~~~~~~~~----~~~~~~~~d~~~p~~HQsI~VL~Ss~c~~~~~pC~~P~lv~I~fY~~~D~tLGqFLe 799 (1706)
...+.. .....++. +-+.+..++.++|.+||+|+||||++|.+++.+|++|||++|+|||.+|++|||||+
T Consensus 702 ~~~~k~~~~~~~~~~~~~~~~~~~~e~~~s~~~~~~~~HQsilVl~ss~~~~k~~~C~r~~l~~ikyy~~~D~~lg~fL~ 781 (1598)
T KOG0230|consen 702 GNEDKGPGLEPELANNQNIQRPEETEEQSSKDALDPSSHQSILVLFSSRSVLKGSVCERPHLLRIKYYGSFDKPLGRFLR 781 (1598)
T ss_pred hccccCccccccccccccccchhhhhhhhcccCCCccccceeEEEEeeeeeccCCccccccEEEEEeeccccchHhHHHH
Confidence 000000 00000100 111226678999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCCCCCChhcccceeeecCcEEEEEEEecCccccCCCCCCCcEEEeecCCCCCCCCCCCCCCceEEccccc
Q 000298 800 DNLLNQRKQCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAA 879 (1706)
Q Consensus 800 d~~~~~~~~C~sC~~pm~~H~rsYvH~~g~ltI~Ve~l~~~~~lpge~~g~I~MWs~Ck~C~~~~g~~~sTp~v~MSd~t 879 (1706)
++||+++|.|++|.+||++|+|||||++|+++|.|++++.. +||+.+|+|||||||++|++. ||+|++|+||++|
T Consensus 782 ~~~f~~~~~C~sC~~~~laHv~~yvh~~g~l~I~v~~~~e~--l~~e~~~kI~~w~~ClkC~~~---~~sT~rv~~Sdaa 856 (1598)
T KOG0230|consen 782 DYLFDQRYMCPSCNEPMLAHVRCYVHGNGSLTISVKKLPEL--LPGEQKGKIWMWSRCLKCNRF---PPSTRRVVMSDAA 856 (1598)
T ss_pred HHHhcccccCccccchHHHHHHHHhhccCceEEEeeccccc--cccccCceEEEEeccccCCCC---CCCcceeEcchhh
Confidence 99999999999999999999999999999999999999987 899999999999999999985 8999999999999
Q ss_pred cccchHHHHHHhcCCCCCCCCCCCCCCCcccceeeecccCCeEEEEEeeeeeeeEEecCCceeEeccchhHHHHHHHHHH
Q 000298 880 CGLSFGKFLELSFSHHSSSTRLSSCGHSLHRDFLYFFGLGPMVGMFKYSPFTTYNMCVPPQKLEFSNSINKWLKEEFQNV 959 (1706)
Q Consensus 880 W~~SFGKFLELsF~~~~~~~r~~~C~H~l~rDhlryFg~~~~Va~f~YspI~v~ev~lPp~~l~~~~~~~~~l~~E~~~v 959 (1706)
|++||||||||+||+|+++.|+..|||+||||||||||||+|||+|+|++|++|+|++||.+|+|+...++|+.+|+++|
T Consensus 857 w~lSfgKfLEl~fs~~a~~~R~~~C~Hsl~rD~L~ffgf~~mva~f~ys~i~v~~v~lpp~~l~~~~~~~~~~~~e~k~v 936 (1598)
T KOG0230|consen 857 WGLSFGKFLELSFSNHATANRVASCGHSLHRDCLRFFGFGNMVACFRYSPIEVYEVDLPPSKLEFNHIQQEWLQEEIKEV 936 (1598)
T ss_pred HhhhHHHHHHhhhccccccccccCCcchhhhhhhhhcccCCceeeeeeccceeEEEeCChhhcccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999944449999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhhHhHHHHHHHH
Q 000298 960 YTKGILLFSEVESSLKQIGSRFVGSTLNLQGSLKEFSVTSEILKQERSVFEVDIQKTVAKKVHSDEALHKLLSLNRLRWE 1039 (1706)
Q Consensus 960 ~~k~~~~f~sV~~rL~~ik~~~~~~~~~~~~~~~~i~eL~~~l~~e~~~~~~~l~~~~~~~~~~~~~~~~iL~lN~l~r~ 1039 (1706)
+.||+.+|++|.++|.+|+.+. +. ...+.+|+.+|.+|+.+|++.|+.++.......+..+++|.||++||.
T Consensus 937 ~~k~~~~~n~v~~~l~~i~~~~----~~----~~~i~~l~~~l~~e~~~f~~~l~~~~~~~~~~~~~s~d~l~l~~~rr~ 1008 (1598)
T KOG0230|consen 937 IEKGEELYNEVLERLSRIAEKD----EN----RPLIQELKELLKHEKKEFKQNLQPIFTLEVDDGQLSHDILALNRDRRA 1008 (1598)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc----cc----cchhhhhhhhhhhhHHHHHHhhhhhhhhccccCcchhhHHHHHHHHHH
Confidence 9999999999999999999861 11 357899999999999999999999999877778889999999999999
Q ss_pred HHHHHhhhhHHhhhccCCCCcc-cccCCccCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCccCcccccc
Q 000298 1040 LLIESCIWDRRLHSLLLPDPTV-VITGATEKPGPEQTKVKMDGTTAKGNEVPEPEVDSGNGDNVSNNFGNLEVLPDVAAE 1118 (1706)
Q Consensus 1040 L~~~~~~WD~rl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 1118 (1706)
|...++.||.||+.+....+.. ..+.+.++. ++ ..+ +.....+++......+..........+..+...++
T Consensus 1009 l~~~s~~w~~~l~s~~~~~k~~~~~~~~~~~~--~~-----~~~-~~~~r~p~~~k~~~~~~~~~~~~s~~~~~~~~~lp 1080 (1598)
T KOG0230|consen 1009 LLASSYLWDERLISLSKSLKLESSKDTKPKES--ET-----NST-AKRKRSPEPQKGVDEDSFLTDSSSDVSSLEHLNLP 1080 (1598)
T ss_pred HHhhhccccccchhhhhhhccccccccccccc--cc-----cCc-cccccCchhhccccccccccccccccCccccccCC
Confidence 9999999999999775432200 000111111 10 000 00011111100000000000000000000000000
Q ss_pred hhhhhhc-ccCCCCCCCCcCccccccccccccccccccc-CCCCccccccccccccCCCCCCCCCCCccccccccccccc
Q 000298 1119 ADELVVK-EIPIDGPDRESGERDHKKTTVLKDVETSIAS-DLSSTSLANEDSMVRSNVSDYLSGDDNVQAGKFLMSENLQ 1196 (1706)
Q Consensus 1119 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 1196 (1706)
..+.... +...-.+.....+. .+.......+....+. ....+++.+..+..|.
T Consensus 1081 ~~~~s~~~d~~~~~~~~~~~~~-~s~~~~~~~v~n~~s~~~~~~~~~~~~l~~~~~------------------------ 1135 (1598)
T KOG0230|consen 1081 LPEDSNSTDTGLSGPSEVLEDN-ESIDEMLGSVRNTYSLANKVRKILKQILDSATI------------------------ 1135 (1598)
T ss_pred CCCcccccchhccCcccccccc-cchhhcccccccccchhhHHHHHHHHhcccccc------------------------
Confidence 0000000 00000000000000 0000000000000000 0000000011111110
Q ss_pred ccccc----CCcccccCCCCccCCCCCCCCCccccccchh-hhcccccccchhHHHH-HHHHhhccCCCCCcccccCCCC
Q 000298 1197 VDKVV----PNSQYLANSGSVVDPNASKNETSTHSLLSDL-EKLNGWFWMPFSELQQ-IYMKDLQRGFVPKFECVSRYTP 1270 (1706)
Q Consensus 1197 ~~~~~----p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-e~~~~~~~~p~~~~~~-~~~~~~~~~~l~k~~~v~~~~p 1270 (1706)
..++. |.... +...+.. +... .+... .+...|++.||..+.. .+.++.+... ++........|
T Consensus 1136 g~r~~~~~~P~s~~----~~~~~~~--~~~~----~~~~~e~~~~~~~e~~~~~~~~~~~~~e~~lns-~~~~~~~~~~~ 1204 (1598)
T KOG0230|consen 1136 GNRANPKSSPFSGQ----DHSTDLP--LESN----PIHVLEKELSSWIEDPLTNMYYREATKELSLNS-QKNSAETKEPP 1204 (1598)
T ss_pred cccccCCCCCCchh----hhccccc--cccC----CccccccccHHHHhhhhhhHhHHHHHHHHHhhc-chhhcccccCC
Confidence 00111 10000 0000000 0000 00111 1456799999988875 5555543322 22111222333
Q ss_pred CCCCchhhhhcccCccccccCCCCCceeeeccCCchhHHHhhhcCcCCcccccccccCCCCCCCCcccccccccccc-cc
Q 000298 1271 EHLPTVYQLISEEGTRMHIPLGAENYMVSDYEGELSSIIACALAVLKEMPLSTVVFNEDSGRDGDMAVKTIDSLRSL-TR 1349 (1706)
Q Consensus 1271 ~~~~~~~~~~~~~~~~~~~p~~~~~~vv~V~edEpSSiIA~aLss~eY~~~l~~~~~~~~~~~~~~~~k~~~~~s~~-~~ 1349 (1706)
.+..+-.....+.++|+.+|++.++.+|+||||||+|+|||||++.+|+.+... . .....-..+.+ .+
T Consensus 1205 k~~~s~~~s~~~~~~rLl~p~~~ndl~vp~~edpp~s~ia~al~s~~~~~q~~~----p-------~~sis~~~S~~~~~ 1273 (1598)
T KOG0230|consen 1205 KYPSSESESEPESSSRLLLPLGLNDLVVPVYEDPPPSLIAYALSSKERINQESS----P-------GLSISFSLSNLQGR 1273 (1598)
T ss_pred cCcccccccccccccceeccccCCcccCCcccCCCchhhhhhhcchhhccCCCC----C-------Cccccccccccccc
Confidence 443332233346778999999999999999999999999999999888765431 0 00000000000 00
Q ss_pred Cccccc-CcCccCCCCCCcccccccccCCccccccccccccccccCCCCCCCCCceeeeccccCCCcceEEEEeCHHHHH
Q 000298 1350 IPTMAS-SLWSVNGSSDSDSIYASLSISSEDSRFSSFDGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFR 1428 (1706)
Q Consensus 1350 ~~~~~s-s~~s~~~~~~s~~~~~~~s~~s~d~~~~~~d~~~~l~s~~~~e~~~~~v~~~~~~~~~~~~~~~~~y~p~~F~ 1428 (1706)
...... ..|... +.+... +. .+.+ ..++.++++. ++..+++.++|++|+.+|+|++|||++|+
T Consensus 1274 ~s~~~e~~~~~~~-sl~~s~------l~-----~s~~---~~~e~l~~~~-~~~~~h~~~~f~egk~k~svk~~yAe~F~ 1337 (1598)
T KOG0230|consen 1274 LSKISEFDDTKSE-SLDNSG------LE-----SSSY---RRGENLQKSK-LETRTHLEYQFSEGKAKYSVKCYYAEQFR 1337 (1598)
T ss_pred hhhhhhhhhhhhc-cccccc------cc-----hhhh---cchhhccccc-cccccceeeeccCCceEEEEEEEehhhHH
Confidence 000000 000000 000000 00 0011 1223333332 45678899999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHhccCCcCCCCCCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHHHHHhhhcCCCCCcccee
Q 000298 1429 DLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAK 1508 (1706)
Q Consensus 1429 ~LR~~~gi~e~~yi~SLs~~~~~~~sgGKSGS~F~~T~D~rFIIKtis~~E~~~fl~~lp~Yf~yi~~~~~~~~~TlL~K 1508 (1706)
+||+.||+++++||+||+||.+|.++||||||+|+||.|+|||||+|++.|+++|++|||+||+||.+++++..||+|||
T Consensus 1338 ~LR~~c~~sEe~fIrSLsRc~~W~aqGGKSgs~F~KTlDDRFIiKq~sk~EleSFikFAP~YFkYl~~s~~~~~PT~LAK 1417 (1598)
T KOG0230|consen 1338 ALRKICCPSEEDFIRSLSRCVKWEAQGGKSGSFFAKTLDDRFIIKQMSKTELESFIKFAPAYFKYLTESISQKSPTCLAK 1417 (1598)
T ss_pred HHHHhhCchHHHHHHHHhcCcccccCCCcccceeeccccchhhhhhccHHHHHHHHhhhHHHHHHHHHHHhcCCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeecCCCCcceeEEEEEEeeccCCCccceeeeccCccccccccCCCCCCccccccccccccCCCccccCHHHH
Q 000298 1509 VLGIYQVTIRQPKSGKEMRHDLMVMENLTFERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAK 1588 (1706)
Q Consensus 1509 i~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~~~i~~~YDLKGS~~~R~~~~~~~~~~VLkD~Nfi~~~~~~pi~l~~~~k 1588 (1706)
|||+|||.+|++++|++.||++||||||||+++++|+||||||+|||+++.+++.+.||+|+||+++++++||||++++|
T Consensus 1418 IlGiyqV~vK~~~sgke~K~DvmVMENLfY~r~vsRifDLKGS~RnR~v~~t~~~d~VLLDeNlVe~~~~sPIfV~~~sK 1497 (1598)
T KOG0230|consen 1418 ILGIYQVSVKSPKSGKETKMDVMVMENLFYGRKVSRIFDLKGSLRNRYVPTTSGADEVLLDENLVEMMWTSPIYVGSHSK 1497 (1598)
T ss_pred hheeEEEEEecCCCCceeEeeeeeehhhhhccccceeeeccchhhhccCCCCCCCceEEecHHHHhhhhcCCeeehHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhhhccCCcccceeeEEEecCcceEEEEEEEeeeccCchhhHHHHHhhhc--CCCCCCCcccChhHHHHH
Q 000298 1589 RILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETWVKSSL--VPKNVLPTVISPKDYKRR 1666 (1706)
Q Consensus 1589 ~~L~~~l~~Dt~FL~~~nvMDYSLLvGid~~~~~l~vGIID~Lr~Yt~~KklE~~vK~~~--~~~~~~pTvi~P~~Y~~R 1666 (1706)
+.|.++|||||.||+++||||||||||||++++|||+||||||||||||||||+|||..| .|+|+.||||+|++|++|
T Consensus 1498 ~lL~~aiwNDT~FLas~~VMDYSLLVGvD~e~~ELvlGIIDfiRtYTWDKkLESWVK~sGl~gpk~~~PTVVSP~qYK~R 1577 (1598)
T KOG0230|consen 1498 RLLRRAIWNDTSFLASINVMDYSLLVGVDDENNELVLGIIDFIRTYTWDKKLESWVKSSGLGGPKNKQPTVVSPEQYKTR 1577 (1598)
T ss_pred HHHHHHHhcchHHhhhcccceeeeEEEeeCCCCeEEEEehHhhhhhhhhhhhhhheeccccccCCCCCCceeCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 488999999999999999
Q ss_pred HHHHHhhhcccCCCCcCCCC
Q 000298 1667 FRKFMSTHFLSVPDHWCSPE 1686 (1706)
Q Consensus 1667 F~~~m~~yf~~vPd~w~~~~ 1686 (1706)
||+||++|||+|||+|++++
T Consensus 1578 FRkAMd~YfL~VPD~Wtg~g 1597 (1598)
T KOG0230|consen 1578 FRKAMDTYFLMVPDQWTGLG 1597 (1598)
T ss_pred HHHHHhheeeecCCcccCCC
Confidence 99999999999999999886
No 2
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=100.00 E-value=2.4e-67 Score=612.27 Aligned_cols=256 Identities=42% Similarity=0.717 Sum_probs=239.0
Q ss_pred CCcceEEEEeCHHHHHHHHHhcCCChHHHHHHhccCCcCCCC-CCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHH
Q 000298 1413 GKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAK-GGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYF 1491 (1706)
Q Consensus 1413 ~~~~~~~~~y~p~~F~~LR~~~gi~e~~yi~SLs~~~~~~~s-gGKSGS~F~~T~D~rFIIKtis~~E~~~fl~~lp~Yf 1491 (1706)
....|+|++|+|.+|++||+.||+++++|+.||++|..|..+ +|||||+||+|.|+|||||||+++|++.|+++||+||
T Consensus 53 ~~~~f~fk~Y~P~vF~~lR~~~gi~~~dy~~Sl~~~~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~ 132 (313)
T cd00139 53 LSADFKFKDYCPEVFRALRELFGIDEADYLRSLCRSPLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNYY 132 (313)
T ss_pred CCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhcCCCCccCCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999989865 9999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCC-CccceeeeEEEEEEeecCCCCcceeEEEEEEeeccCC-CccceeeeccCccccccccCC--CCCCccc
Q 000298 1492 KYMNESFDSGN-QTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFE-RNITRQYDLKGALHARYNTTV--DGSGDVL 1567 (1706)
Q Consensus 1492 ~yi~~~~~~~~-~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~-~~i~~~YDLKGS~~~R~~~~~--~~~~~VL 1567 (1706)
+||.+ || +|||+||||+|+|++++ |...+++||||+|||++ ..|+++||||||+++|.+... .....||
T Consensus 133 ~~~~~----n~~~TLL~k~~Gl~~i~~~~---~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~vl 205 (313)
T cd00139 133 EYITQ----NPQNTLLPKFFGLYRVKVKS---GTGKKVDFLVMENLFYSRLKIHRKYDLKGSTRNREASKKEKQKENPVL 205 (313)
T ss_pred HHHHh----CCCCcchhhheEEEEEEEcC---CCCceEEEEEEecCCCCCccceEEEECCCCCCCCCcCcccccCCcccc
Confidence 99998 78 99999999999998864 22357899999999998 789999999999999999763 3467899
Q ss_pred cccccccccCCCccccCHHHHHHHHHHHHhhHhhhccCCcccceeeEEEecCcceEEEEEEEeeeccCchhhHHHHHhhh
Q 000298 1568 LDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETWVKSS 1647 (1706)
Q Consensus 1568 kD~Nfi~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGid~~~~~l~vGIID~Lr~Yt~~KklE~~vK~~ 1647 (1706)
||.||++.. ..+|+|+++.|+.|++||++||.||+++||||||||||||..+.+|++|||||||+|||+||+|+|+|++
T Consensus 206 KD~df~~~~-~~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGi~~~~~i~~~GIID~L~~y~~~Kk~E~~~K~~ 284 (313)
T cd00139 206 KDLNLLEMI-EQPLFVGEHSKKALLTQIKRDCEFLESLNIMDYSLLVGIHDIRLVLYLGIIDILRTYTWDKKLEHWVKSL 284 (313)
T ss_pred chhhhHhhc-CceEEeCHHHHHHHHHHHHHHHHHHHHCCCcccceEEEEecCCceEEEEEEeeeeeCCHHHHHHHHHHHh
Confidence 999999976 5699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccChhHHHHHHHHHHhhhcc
Q 000298 1648 LVPKNVLPTVISPKDYKRRFRKFMSTHFL 1676 (1706)
Q Consensus 1648 ~~~~~~~pTvi~P~~Y~~RF~~~m~~yf~ 1676 (1706)
..+++..||||+|++|++||++||++||+
T Consensus 285 ~~~~~~~iS~v~P~~Y~~RF~~fi~~~f~ 313 (313)
T cd00139 285 GHDGGKTPSVVSPEQYAKRFREFMDKYFL 313 (313)
T ss_pred ccCCCCCcceECHHHHHHHHHHHHHHhcC
Confidence 76554679999999999999999999995
No 3
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-68 Score=619.59 Aligned_cols=359 Identities=32% Similarity=0.433 Sum_probs=292.8
Q ss_pred CCceeeeccCCchhHHHhhhcCcCCcccccccccCCCCCCCCccccccccccccccCcccccCcCccCCCCCCccccccc
Q 000298 1294 ENYMVSDYEGELSSIIACALAVLKEMPLSTVVFNEDSGRDGDMAVKTIDSLRSLTRIPTMASSLWSVNGSSDSDSIYASL 1373 (1706)
Q Consensus 1294 ~~~vv~V~edEpSSiIA~aLss~eY~~~l~~~~~~~~~~~~~~~~k~~~~~s~~~~~~~~~ss~~s~~~~~~s~~~~~~~ 1373 (1706)
.+.-|+++++||||+|||+|+++||+.++...+..... .....+. .. .+++ +..+..
T Consensus 242 s~S~~iir~~~pss~~a~~~s~~d~~~k~mr~r~se~~----De~~l~~-----~~----le~g----------h~n~~~ 298 (612)
T COG5253 242 SDSDVIIREDEPSSLIAFCLSTSDYRNKMMRLRDSETM----DERLLNG-----MP----LEGG----------HRNPQE 298 (612)
T ss_pred CccccccccCCcchhhhccccchhHHHHHHhhhhhhcc----hhhhccc-----cc----cccc----------cccchh
Confidence 45567899999999999999999999987533211100 0000000 00 0000 000000
Q ss_pred ccCCccccccccccccccccCCCCCCCCCceeeeccccCCCcceEEEEeCHHHHHHHHHhcCCChHHHHHHhccCCcCCC
Q 000298 1374 SISSEDSRFSSFDGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDA 1453 (1706)
Q Consensus 1374 s~~s~d~~~~~~d~~~~l~s~~~~e~~~~~v~~~~~~~~~~~~~~~~~y~p~~F~~LR~~~gi~e~~yi~SLs~~~~~~~ 1453 (1706)
+.. -+ .+.-+.++..+.+|.++. -++.+++|..|...|+|++|+|++|+.||++||+++. |+.++++|..|..
T Consensus 299 syn--ml-tgirvtlsr~e~iM~~~t---dth~~e~~~eg~~~~s~K~y~~e~Fr~lR~l~g~~~a-lvsl~sryil~E~ 371 (612)
T COG5253 299 SYN--ML-TGIRVTLSRIEEIMIKKT---DTHLNEQFEEGLYEFSCKDYFPEVFRELRALCGCDEA-LVSLLSRYILWES 371 (612)
T ss_pred hhh--hh-hhhHHHHHHHHHHhcCCc---CccchhhccccceeeeHHhhCHHHHHHHHHHhCCcHH-HHHHHhhhheecc
Confidence 000 00 000011233444554431 2456678999999999999999999999999999885 9999999999999
Q ss_pred CCCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHHHHHhhhcCCCCCccceeeeEEEEEEeec-CCCCcceeEEEEE
Q 000298 1454 KGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQ-PKSGKEMRHDLMV 1532 (1706)
Q Consensus 1454 sgGKSGS~F~~T~D~rFIIKtis~~E~~~fl~~lp~Yf~yi~~~~~~~~~TlL~Ki~Gly~i~~k~-~~~g~~~k~~~iV 1532 (1706)
.|||||||||||.|.|||||||++.|+..|..++-+|+.|+.. ||.|+||||||+|+|+++. ..+++..|+||||
T Consensus 372 ~~GKSGSff~~trD~kfIiKti~hsE~~~~r~~~~eY~~~V~~----np~T~l~ki~G~yrv~~~~s~~~~k~~K~~fiV 447 (612)
T COG5253 372 NGGKSGSFFLFTRDYKFIIKTISHSEHICFRPMIFEYYVHVLF----NPLTLLCKIFGFYRVKSRSSISSSKSRKIYFIV 447 (612)
T ss_pred CCCcccceEEEeccchhhhhhhhhhhHHHHHHHHHHHHHHHHc----CchHHHHHHhceeEEeccccccccccceeEEEE
Confidence 9999999999999999999999999996666666666666555 7889999999999999987 4567888999999
Q ss_pred EeeccCCCccceeeeccCccccccccCCCCCCccccccccccccCCCccccCHHHHHHHHHHHHhhHhhhccCCccccee
Q 000298 1533 MENLTFERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSL 1612 (1706)
Q Consensus 1533 MeNlf~~~~i~~~YDLKGS~~~R~~~~~~~~~~VLkD~Nfi~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSL 1612 (1706)
||||||++.|+++|||||||+||++..++....||+|.|.++.++++|+.+....|+.|+.|||+|+.||+++|||||||
T Consensus 448 MeNlf~~~~i~~ifDLKGS~~Nr~ve~~gk~~s~l~~mndv~wI~es~~~~~g~~Kk~~~sqv~~Dv~fLsklniMDYSl 527 (612)
T COG5253 448 MENLFYPHGIHRIFDLKGSMRNRHVERTGKSMSVLLDMNDVEWIRESPKIVFGLKKKLLLSQVWNDVLFLSKLNIMDYSL 527 (612)
T ss_pred ecccCCCCCcceEEeccCchhhhhhhhhccccchhccchhHHHHHhCchhhhhHHHHHHHHHHHHHHHHHHHhCccceeE
Confidence 99999999999999999999999999999999999999999988899999988999999999999999999999999999
Q ss_pred eEEEecCcceEEEE-EEEeeec-cCchhhHHHHHhhhcC----CCCCCCcccChhHHHHHHHHHHhhhcccCCCCcCCCC
Q 000298 1613 LVGVDSQRRELVCG-IIDYLRQ-YTWDKHLETWVKSSLV----PKNVLPTVISPKDYKRRFRKFMSTHFLSVPDHWCSPE 1686 (1706)
Q Consensus 1613 LvGid~~~~~l~vG-IID~Lr~-Yt~~KklE~~vK~~~~----~~~~~pTvi~P~~Y~~RF~~~m~~yf~~vPd~w~~~~ 1686 (1706)
|||||..+.+..|| |||++|+ |||||++|.|+|..+. -+...||+|+|.+|++||++||+.|++.+|+.|++.+
T Consensus 528 lVgi~~~~~~~~V~~I~d~i~t~~t~Dk~~~~gI~d~lt~~s~~k~~~~t~v~p~~y~nrf~~~~e~yi~~~p~~~~~~~ 607 (612)
T COG5253 528 LVGIDDEREEASVGLIIDFIRTRMTGDKKLESGIKDKLTVGSFTKRKEPTAVTPRQYKNRFRKAMEAYIDPFPDKKTQEG 607 (612)
T ss_pred EEEeccchhhcchHHHHhhhccccccceeeeeehhhhhccceeeecccceecCHHHHHHHHHHhHHHhhhcccchhhhcc
Confidence 99999999999999 9999999 9999999999999982 3446799999999999999999999999999999875
No 4
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=100.00 E-value=6.7e-66 Score=607.06 Aligned_cols=258 Identities=38% Similarity=0.622 Sum_probs=237.7
Q ss_pred cccCCCcceEEEEeCHHHHHHHHHhcCCChHHHHHHhccCCc-CCCCCCCcceeEEEecCCcEEEeecCHHHHHHHHHHH
Q 000298 1409 SKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRN-WDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFA 1487 (1706)
Q Consensus 1409 ~~~~~~~~~~~~~y~p~~F~~LR~~~gi~e~~yi~SLs~~~~-~~~sgGKSGS~F~~T~D~rFIIKtis~~E~~~fl~~l 1487 (1706)
.++.....|+|++|+|.+|++||+.+|+++++|++||++|.. |.++||||||+||+|.|+|||||||++.|++.|+++|
T Consensus 22 ~~~~~~~~~~~~~Y~P~~F~~lR~~~~i~~~~y~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiiKti~~~E~~~l~~~l 101 (342)
T smart00330 22 TPSHGSADFKFKDYCPEVFRNLRELFGIDPADYLRSLCRSPPLELSSGGKSGSFFYLSLDDRFIIKTVSKSEIKSLLPML 101 (342)
T ss_pred cCCCCCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhCCCCccccCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHH
Confidence 356668899999999999999999999999999999999986 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCccceeeeEEEEEEeecCCCCcceeEEEEEEeeccC-CCccceeeeccCccccccccC-CCCCCc
Q 000298 1488 LHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTF-ERNITRQYDLKGALHARYNTT-VDGSGD 1565 (1706)
Q Consensus 1488 p~Yf~yi~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~-~~~i~~~YDLKGS~~~R~~~~-~~~~~~ 1565 (1706)
|.||.||.+ ||+|||+||||+|+|+++ +|+..+++||||+|||+ +..|+++||||||+++|.+.. ......
T Consensus 102 p~Y~~~~~~----n~~SlL~ki~Gly~i~~~---~~~~~~~~fiVM~NlF~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~ 174 (342)
T smart00330 102 PNYYEHIVQ----NPNTLLPKFFGLYRVKVK---GGTEKKIYFLVMENLFYSDLKVHRKYDLKGSTRGREADKKKVKELP 174 (342)
T ss_pred HHHHHHHHh----CCCcchhhhcEEEEEEEC---CCcceeEEEEEEecCCCCCCceeEEEECCCCCCCCCcCccccCCCC
Confidence 999999997 799999999999999874 34456799999999999 578999999999999999875 334578
Q ss_pred cccccccccccCCCccccCHHHHHHHHHHHHhhHhhhccCCcccceeeEEEecCcc------------------------
Q 000298 1566 VLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRR------------------------ 1621 (1706)
Q Consensus 1566 VLkD~Nfi~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGid~~~~------------------------ 1621 (1706)
||||.||++. ...+|+|+++.|+.|++||++||.||+++|||||||||||+..+.
T Consensus 175 vlkD~df~~~-~~~~i~l~~~~k~~l~~ql~~D~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
T smart00330 175 VLKDLDLVEM-WNQPIYVDPLAKKALLKQIKRDCEFLESLKIMDYSLLVGIHDIERGQREEIELPPVYGSDESPSSESSN 253 (342)
T ss_pred cccccchhhc-cCCeEEECHHHHHHHHHHHHHHHHHHHHccchhhhhhhccccccccchhcccccccccccccccccccc
Confidence 9999999987 567999999999999999999999999999999999999986432
Q ss_pred ------------------------------------eEEEEEEEeeeccCchhhHHHHHhhhcCCCCCCCcccChhHHHH
Q 000298 1622 ------------------------------------ELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDYKR 1665 (1706)
Q Consensus 1622 ------------------------------------~l~vGIID~Lr~Yt~~KklE~~vK~~~~~~~~~pTvi~P~~Y~~ 1665 (1706)
+|+||||||||+|||+||+|||+|+...+ +..||||+|++|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vy~iGIID~Lq~Y~~~KklE~~~K~~~~~-~~~iS~V~P~~Y~~ 332 (342)
T smart00330 254 GGKAPDITGNLLVSNSPDGDGPFGGIPARAIRARRVVLYLGIIDILQTYTWDKKLEHWVKSIGHD-GKTISVVHPEQYAK 332 (342)
T ss_pred cCCCccccccccccccccccccccccccccccCCceEEEEEEEEEEEeCCHhHHHHHHHHHhccC-CCCcceECHHHHHH
Confidence 79999999999999999999999999654 35799999999999
Q ss_pred HHHHHHhhhc
Q 000298 1666 RFRKFMSTHF 1675 (1706)
Q Consensus 1666 RF~~~m~~yf 1675 (1706)
||++||++||
T Consensus 333 RF~~fi~~~F 342 (342)
T smart00330 333 RFRDFMDKYF 342 (342)
T ss_pred HHHHHHHhhC
Confidence 9999999998
No 5
>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=9e-58 Score=532.04 Aligned_cols=252 Identities=35% Similarity=0.524 Sum_probs=227.3
Q ss_pred CcceEEEEeCHHHHHHHHHhcCCChHHHHHHhccCCcCC--CCCCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHH
Q 000298 1414 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWD--AKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYF 1491 (1706)
Q Consensus 1414 ~~~~~~~~y~p~~F~~LR~~~gi~e~~yi~SLs~~~~~~--~sgGKSGS~F~~T~D~rFIIKtis~~E~~~fl~~lp~Yf 1491 (1706)
...|++|.|+|.+||.||++|||+++||+.||++..... +++|||||+||.|.|+|||||||.++|++.++++||.||
T Consensus 95 ~~~Fk~KdYcP~vFR~lRelFgId~~DYl~Slc~~~~l~e~sspGksGS~Fy~S~DdrFiIKTv~~~E~~~l~~mLp~Yy 174 (420)
T KOG0229|consen 95 SSDFKFKDYCPMVFRNLRELFGIDPADYLLSLCGNPPLRELSSPGKSGSFFYLSYDDRFIIKTVRKSEVKVLLKMLPGYY 174 (420)
T ss_pred ccccchhhcChHHHHHHHHHhCCChHHHHHHHhcchhhhhccCCCCccceEEEecCceEEEEeccHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999876654 677999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCccceeeeEEEEEEeecCCCCcceeEEEEEEeeccCCC-ccceeeeccCccccccccCCC--CCCcccc
Q 000298 1492 KYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQYDLKGALHARYNTTVD--GSGDVLL 1568 (1706)
Q Consensus 1492 ~yi~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~~-~i~~~YDLKGS~~~R~~~~~~--~~~~VLk 1568 (1706)
+|+.++ ++.|||+||||+|+|+.. +|+ +++||||+|||..+ .|+++||||||+++|.+.+.+ ++..+||
T Consensus 175 ~~v~~~---~~~TLl~kf~Gly~vk~~---gg~--k~yfvVM~Nlf~~~~~iH~kyDLKGSt~~R~askke~~k~~pTlK 246 (420)
T KOG0229|consen 175 QHVVEQ---NNRTLLPKFFGLYRVKPD---GGK--KIYFVVMNNLFPSRLKVHRKYDLKGSTVGREASKKEKIKELPTLK 246 (420)
T ss_pred HHHHcc---CCceeehhhceeEEEeeC---CCc--eEEEEEecccCCCccceeEEeecCCCcccccccchhhccCCCccc
Confidence 999984 666999999999999763 564 58999999999985 999999999999999997633 4678999
Q ss_pred ccccccccCCCccccCHHHHHHHHHHHHhhHhhhccCCcccceeeEEEecC-----------------------------
Q 000298 1569 DQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQ----------------------------- 1619 (1706)
Q Consensus 1569 D~Nfi~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGid~~----------------------------- 1619 (1706)
|.||++. ...|++++..|+.|++||++||.||++++|||||||||||..
T Consensus 247 DlDf~~~--~~~~~l~~~~~~~l~~ql~~Dce~Le~~~IMDYSLLvGiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (420)
T KOG0229|consen 247 DLDFLNE--GQKLYLGKEAKKALLKQLKRDCEFLESLKIMDYSLLVGIHDRDRGQAEKEELEPQEDESEREQRLSSASPE 324 (420)
T ss_pred cchhhcc--CceEecCHHHHHHHHHHHHHHHHHHHHhcchhhhheeeeeeccccccchhhcCCCCCcccccccccccccc
Confidence 9999984 357999999999999999999999999999999999999730
Q ss_pred ----------------------------------------cceEEEEEEEeeeccCchhhHHHHHhhhcCCCCCCCcccC
Q 000298 1620 ----------------------------------------RRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVIS 1659 (1706)
Q Consensus 1620 ----------------------------------------~~~l~vGIID~Lr~Yt~~KklE~~vK~~~~~~~~~pTvi~ 1659 (1706)
+.+||+||||+||.|+..||+||.+|++..+. ..+++++
T Consensus 325 ~~~~~~~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~y~GIIDILq~Y~~~KK~EH~~Ksl~~d~-~tIS~v~ 403 (420)
T KOG0229|consen 325 DVLTSTASPSIQLGANMPARAGEERVDRMEYAPAQNSGGYDVVLYIGIIDILQDYDIKKKLEHAYKSLQHDP-DTISAVD 403 (420)
T ss_pred ccCCCCCcccccCCCCCCCccccccccccccccccccCcceEEEEEEeehhhhhcchhhHHHHHHhhhccCC-ceeeccC
Confidence 12489999999999999999999999986543 4589999
Q ss_pred hhHHHHHHHHHHhhhcc
Q 000298 1660 PKDYKRRFRKFMSTHFL 1676 (1706)
Q Consensus 1660 P~~Y~~RF~~~m~~yf~ 1676 (1706)
|++|++||++||.+.|.
T Consensus 404 P~~Ys~RF~dFi~~~~~ 420 (420)
T KOG0229|consen 404 PKFYAKRFLDFISNIFF 420 (420)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999873
No 6
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=100.00 E-value=4.8e-56 Score=506.79 Aligned_cols=222 Identities=36% Similarity=0.583 Sum_probs=156.1
Q ss_pred HhccC--CcCCCCCCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHHHHHhhhcCCCCCccceeeeEEEEEEeecCC
Q 000298 1444 SLSRC--RNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPK 1521 (1706)
Q Consensus 1444 SLs~~--~~~~~sgGKSGS~F~~T~D~rFIIKtis~~E~~~fl~~lp~Yf~yi~~~~~~~~~TlL~Ki~Gly~i~~k~~~ 1521 (1706)
||+.+ ..|.+++|||||+||+|.|+|||||||+++|++.|+++||+||+||.+ +|.|||+||||+|+|...
T Consensus 2 sl~~~~~~~~~~s~GKSGs~F~~T~D~kfiiKti~~~E~~~l~~~lp~Y~~~~~~----~~~SlL~r~~Gl~~i~~~--- 74 (252)
T PF01504_consen 2 SLCNLSSLSEKSSGGKSGSFFFFTSDGKFIIKTISKSEFKFLLKILPAYFEHMSE----NPNSLLPRFYGLYSIKKS--- 74 (252)
T ss_dssp ---------ES---SSSSS-EEE-TTSSEEEEEE-HHHHHHHHHHHHHHHHHHHH----TTTSSS--EEEEEEE-EE---
T ss_pred CccccccccccCCCCCccCEEEEeCCCCEEEEeCCHHHHHHHHHHHHHHHHHHHh----CcCchHHHHHHHheeccc---
Confidence 56543 568899999999999999999999999999999999999999999999 788999999999999432
Q ss_pred CCcceeEEEEEEeeccCC-CccceeeeccCccccccccCC--CCCCccccccccccccCCCccccCHHHHHHHHHHHHhh
Q 000298 1522 SGKEMRHDLMVMENLTFE-RNITRQYDLKGALHARYNTTV--DGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWND 1598 (1706)
Q Consensus 1522 ~g~~~k~~~iVMeNlf~~-~~i~~~YDLKGS~~~R~~~~~--~~~~~VLkD~Nfi~~~~~~pi~l~~~~k~~L~~~l~~D 1598 (1706)
+| ..+++||||+|||++ ..|+++||||||+++|.+... .....|+||.||.+.. .+|+|+++.++.|++||++|
T Consensus 75 ~~-~~~~~fvVM~N~f~~~~~i~~~yDLKGs~~~R~~~~~~~~~~~~~lkD~df~~~~--~~i~l~~~~~~~l~~ql~~D 151 (252)
T PF01504_consen 75 NG-KEKIYFVVMENLFYTPRNIHERYDLKGSTVGRKAKKKDREQTEPVLKDLDFIESK--RKIHLGPEQKEELLKQLERD 151 (252)
T ss_dssp TT--EEEEEEEEE-SS-SSS--SEEEEE--SSSSS-S-CHHHCSSS-EEEHHHHHHTT----SBS-SCHHHHHHHHHHHH
T ss_pred CC-ceeEEEEEECCCccCCcccceEEecCCcccCCCCCccccccccceeecccccccC--cEEEeChHHHHHHHHHHHHH
Confidence 34 467899999999999 799999999999999998752 2357899999999864 58999999999999999999
Q ss_pred HhhhccCCcccceeeEEEe------------------------cCcceEEEEEEEeeeccCchhhHHHHHhhhcCCCCCC
Q 000298 1599 TTFLNSIDVMDYSLLVGVD------------------------SQRRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVL 1654 (1706)
Q Consensus 1599 t~FL~~~nvMDYSLLvGid------------------------~~~~~l~vGIID~Lr~Yt~~KklE~~vK~~~~~~~~~ 1654 (1706)
|.||+++|||||||||||+ ..+.+|++|||||||+|||+|++|+|+|+....++..
T Consensus 152 ~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~s~~~~~vy~~GIID~L~~y~~~K~~E~~~K~~~~~~~~~ 231 (252)
T PF01504_consen 152 TEFLSSHNIMDYSLLVGIHNRDSNEEQENKSSFPSYAGGIMSEDGNEVYYLGIIDILQEYNWKKKLEHFFKSLIKCDGQD 231 (252)
T ss_dssp HHHHHHTTEES-EEEEEEEH---HHHHHH-H---TTTTTTCCCETTEEEEEEEE-S-EETT------------------S
T ss_pred HHHHHhccccccceeEeeeeccccccccccccccccccceeecCCCeEEEEEEehheeeccHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999 4568899999999999999999999999995333457
Q ss_pred CcccChhHHHHHHHHHHhhhc
Q 000298 1655 PTVISPKDYKRRFRKFMSTHF 1675 (1706)
Q Consensus 1655 pTvi~P~~Y~~RF~~~m~~yf 1675 (1706)
+|||+|++|++||++||++||
T Consensus 232 iS~v~P~~Y~~RF~~~i~~~f 252 (252)
T PF01504_consen 232 ISCVPPEEYAERFIKFIESIF 252 (252)
T ss_dssp SS---HHHHHHHHHHHHHHH-
T ss_pred CcccCHHHHHHHHHHHHHHhC
Confidence 999999999999999999997
No 7
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=1.3e-54 Score=545.14 Aligned_cols=248 Identities=28% Similarity=0.426 Sum_probs=221.7
Q ss_pred CcceEEEEeCHHHHHHHHHhcCCChHHHHHHhccCCcC--CCCCCCcceeEEEecCCcEEEeecCHHHHHHHHHHHHHHH
Q 000298 1414 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNW--DAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYF 1491 (1706)
Q Consensus 1414 ~~~~~~~~y~p~~F~~LR~~~gi~e~~yi~SLs~~~~~--~~sgGKSGS~F~~T~D~rFIIKtis~~E~~~fl~~lp~Yf 1491 (1706)
...|+|+.|+|.+|++||++|||++++|+.||+.+..+ .+++|||||+||+|.|+|||||||+++|+++|++|||+||
T Consensus 401 ~~~fkfkdY~P~vFr~LR~~fgId~~dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiIKTI~k~E~~~l~~iLp~Y~ 480 (765)
T PLN03185 401 SEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEVKVLLRMLPDYH 480 (765)
T ss_pred cCceEEEEECHHHHHHHHHHhCCCHHHHHHhccCCccchhccCCCCcCCeEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999876544 5789999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCccceeeeEEEEEEeecCCCCcceeEEEEEEeeccCC-CccceeeeccCccccccccCCC-CCCccccc
Q 000298 1492 KYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFE-RNITRQYDLKGALHARYNTTVD-GSGDVLLD 1569 (1706)
Q Consensus 1492 ~yi~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~-~~i~~~YDLKGS~~~R~~~~~~-~~~~VLkD 1569 (1706)
+||.. ||+|||+||||+|+|++. +|+ +++||||+|||++ ..|+++||||||+++|.+.... ..+.||||
T Consensus 481 ~hv~~----n~~TLL~kf~Gl~~i~~~---~g~--k~~fvVM~NlF~~~~~I~~~yDLKGSt~~R~~~k~~~~~~~tlKD 551 (765)
T PLN03185 481 HHVKT----YENTLITKFFGLHRIKPS---SGQ--KFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADKVEIDENTTLKD 551 (765)
T ss_pred HHHhh----CCCcchhhheEEEEEEeC---CCc--EEEEEEEecCCCCCCccceEEECCCCCCCCCCccccccCCCeeee
Confidence 99987 799999999999999753 343 5899999999997 5899999999999999986432 35678999
Q ss_pred cccccccCCCccccCHHHHHHHHHHHHhhHhhhccCCcccceeeEEEecCc-----------------------------
Q 000298 1570 QNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQR----------------------------- 1620 (1706)
Q Consensus 1570 ~Nfi~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGid~~~----------------------------- 1620 (1706)
.||.. +|+|+++.|+.|++||++||.||+++||||||||||||...
T Consensus 552 lD~~~-----~~~l~~~~k~~l~~qL~~D~~FL~~~~IMDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (765)
T PLN03185 552 LDLNY-----SFYLEPSWRDALLRQIEIDSKFLEAQRIMDYSLLLGVHFRAPQHLRSLLPYSRSITADGLEVVAEEDTIE 626 (765)
T ss_pred cCcCc-----eEeeCHHHHHHHHHHHHHHHHHHhHCcCeecceEEEEEecChhhhccccccccccccccccccccccccc
Confidence 99842 68999999999999999999999999999999999998210
Q ss_pred --------------------------------------------------------------------------------
Q 000298 1621 -------------------------------------------------------------------------------- 1620 (1706)
Q Consensus 1621 -------------------------------------------------------------------------------- 1620 (1706)
T Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~mpara~~~~~~~~~~~~~~~ 706 (765)
T PLN03185 627 DEELSYPEGLVLVPRGADDGSTVPGPHIRGSRLRASAAGDEEVDLLLPGTARLQIQLGVNMPARAERIPGREDKEKQSFH 706 (765)
T ss_pred ccccccccccccccccccccccCCCcccccccccccccCchhhhhccccccccchhhcccCchhhhcccccccccccccC
Confidence
Q ss_pred ----ceEEEEEEEeeeccCchhhHHHHHhhhcCCCCCCCcccChhHHHHHHHHHHhhhcc
Q 000298 1621 ----RELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDYKRRFRKFMSTHFL 1676 (1706)
Q Consensus 1621 ----~~l~vGIID~Lr~Yt~~KklE~~vK~~~~~~~~~pTvi~P~~Y~~RF~~~m~~yf~ 1676 (1706)
-+||+|||||||.|+..|||||++|++..... .+++|+|+.|++||++||.+.|+
T Consensus 707 e~~d~~~~~giidilq~y~~~k~~eh~~k~~~~~~~-~is~v~p~~y~~rf~~f~~~~f~ 765 (765)
T PLN03185 707 EVYDVVLYLGIIDILQEYNMSKKIEHAYKSLQFDSL-SISAVDPTFYSKRFLEFIQKVFP 765 (765)
T ss_pred cccceEEEEEEEEeecccchhHHHHHHHhhhccCCC-ceeccChHHHHHHHHHHHHhhcC
Confidence 13789999999999999999999999865433 68999999999999999999984
No 8
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=1.5e-46 Score=431.25 Aligned_cols=255 Identities=49% Similarity=0.837 Sum_probs=237.3
Q ss_pred HHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCC
Q 000298 268 AIVSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAH 347 (1706)
Q Consensus 268 ~lv~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvah 347 (1706)
+++.|||.++++ .....|.+.|++|+++|+..+.++...++.+|+.+||+|+|++||++.||++|+|+||+|+++|
T Consensus 2 ~~~~~~~~~~~~----~~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~ 77 (261)
T cd03334 2 ALLAQLLKDEGI----SNDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAH 77 (261)
T ss_pred hHHHHHHHhcCC----CChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCC
Confidence 578999999999 3567899999999999999998654344579997799999999999999999999999999999
Q ss_pred CCCCccccCCcEEEEeeecccCccc--ccchhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEe
Q 000298 348 KHMPTEYKNPRLLLIRGVLGLSSSG--LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVF 424 (1706)
Q Consensus 348 k~M~~~i~nPRILLL~~~LEy~r~~--lsSle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~ 424 (1706)
++||++++|||||||+|+|||++++ +.+++. +++|++|++++|++|++.|||||||+|+|++.|++||.++||++++
T Consensus 78 ~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~ 157 (261)
T cd03334 78 KRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVL 157 (261)
T ss_pred ccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999876 788999 9999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhCCceecccc--CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCccccccCCcch
Q 000298 425 DMKLHRLERVARCTGSPILSSGS--LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSLYPMI 502 (1706)
Q Consensus 425 nVK~~~LeRIAR~TGA~Iv~Sid--L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~~~~~~ 502 (1706)
+|++.+|+||||||||.|+++++ ++++.||+|+.|++++++.+. +.+++|+||+||+.+.+||
T Consensus 158 ~v~~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~--------~~~~~~~~~~~~~~~~~~T------- 222 (261)
T cd03334 158 NVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEH--------GRSKTLMFFEGCPKELGCT------- 222 (261)
T ss_pred ecCHHHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcC--------CCceeEEEEecCCCCceeE-------
Confidence 99999999999999999999954 888999999999999986421 2358999999999999999
Q ss_pred hhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCC
Q 000298 503 VLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQR 561 (1706)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~G 561 (1706)
|+|||++.++|+++||+++||++++||+++|.+|++|.+
T Consensus 223 --------------------IlLRG~t~~~lde~eR~i~Dal~v~~~~~le~~~~~~~~ 261 (261)
T cd03334 223 --------------------ILLRGGDLEELKKVKRVVEFMVFAAYHLKLETSFLADEF 261 (261)
T ss_pred --------------------EEEECCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC
Confidence 999999999999999999999999999999999998854
No 9
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.6e-40 Score=411.49 Aligned_cols=256 Identities=24% Similarity=0.418 Sum_probs=240.7
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCC-CCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVD-GKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~-g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~ 349 (1706)
..|++.+.+++++|....|.+.|++|+++|+..+.++... +..+|+++||+|+|++||+++||++++|++|+|+++|++
T Consensus 145 ~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~ 224 (525)
T TIGR02344 145 AAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPK 224 (525)
T ss_pred HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCC
Confidence 4577888889999999999999999999999999886422 347899889999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCccc---------ccchhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcC
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1706)
Q Consensus 350 M~~~i~nPRILLL~~~LEy~r~~---------lsSle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~g 419 (1706)
|+++++||||||++++|||++.+ ..++++ +++|++|++++|++|++.+|+||+++++|+++|+++|.++|
T Consensus 225 m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~ 304 (525)
T TIGR02344 225 MRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKAN 304 (525)
T ss_pred CccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC
Confidence 99999999999999999999876 246888 99999999999999999999999999999999999999999
Q ss_pred CeEEecCChHHHHHHHHHhCCceecccc-CCCCCcee-eeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCcccccc
Q 000298 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKH-CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVS 497 (1706)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~-C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~ 497 (1706)
|+++.++++.+|+|||++|||+++++++ +++..||+ |+.|++++++. ++|+||+||..+.+||
T Consensus 305 I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~-------------~~~~~~~g~~~~~~~T-- 369 (525)
T TIGR02344 305 ISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGD-------------EYFTFFTECKDPKACT-- 369 (525)
T ss_pred ceEEecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECC-------------eEEEEEEcCCCCCEEE--
Confidence 9999999999999999999999999999 99999998 99999999742 7899999999999999
Q ss_pred CCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 498 LYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||++..+|+++||+++||++++++++.++.+|+||||++..
T Consensus 370 -------------------------IlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ 413 (525)
T TIGR02344 370 -------------------------ILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMA 413 (525)
T ss_pred -------------------------EEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHH
Confidence 99999999999999999999999999999999999999999875
No 10
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=2e-37 Score=387.22 Aligned_cols=255 Identities=25% Similarity=0.375 Sum_probs=238.0
Q ss_pred HHHHHhhcccCCCCCc-chHHHHHHHHHHHHHHhcCCCCCCCC-ccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCC
Q 000298 271 SQLLKSVGVVSSGKDG-ESWVDIVTSLSWEAASSLRPGSVDGK-SLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK 348 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~-~~W~d~ls~L~~eA~~~V~p~~~~g~-~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk 348 (1706)
..|++.+.+++++|.. +.|.+.|++|+++|+..+.+....|. .+|++ +|+|+|++||++.||++++|++|++++.|+
T Consensus 145 ~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~-~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~ 223 (519)
T TIGR02339 145 DLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLD-NIKIEKKTGGSIDDTELVEGIVVDKEPVHP 223 (519)
T ss_pred HHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHH-HeEEEEccCcChhcceeEeeEEEecCCCCC
Confidence 5688899999999988 79999999999999999975322232 58884 999999999999999999999999999999
Q ss_pred CCCccccCCcEEEEeeecccCccc------c---cchhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHc
Q 000298 349 HMPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 418 (1706)
Q Consensus 349 ~M~~~i~nPRILLL~~~LEy~r~~------l---sSle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~ 418 (1706)
+|+++++||||||++++|||++++ + .++.+ +++|++|++++|++|+..||+||+++++|++.|+++|.++
T Consensus 224 ~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~ 303 (519)
T TIGR02339 224 GMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA 303 (519)
T ss_pred CCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC
Confidence 999999999999999999999886 2 35777 8999999999999999999999999999999999999999
Q ss_pred CCeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCcccccc
Q 000298 419 GMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVS 497 (1706)
Q Consensus 419 gItvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~ 497 (1706)
||+++.++++.+|+|||++|||+++++++ +.+..||+|+.|++++++. ++|++|+||..+.+||
T Consensus 304 gI~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~T-- 368 (519)
T TIGR02339 304 GILAVRRVKKSDIEKLARATGAKIVSSIKEITESDLGYAGLVEERKVGD-------------DKMTFVEGCKNPKAVT-- 368 (519)
T ss_pred CCEEEecCCHHHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCCEEE--
Confidence 99999999999999999999999999999 9989999999999999743 6899999999999999
Q ss_pred CCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 498 LYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||++..+|+|+||+++||++++++++.++++|+|||+++..
T Consensus 369 -------------------------I~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ 412 (519)
T TIGR02339 369 -------------------------ILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIE 412 (519)
T ss_pred -------------------------EEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHH
Confidence 99999999999999999999999999999999999999999875
No 11
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-38 Score=364.41 Aligned_cols=254 Identities=23% Similarity=0.442 Sum_probs=240.9
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~M 350 (1706)
.+++...+.+..+|....|.+.++.|+++|+..|..+ .|..+||..|+||.|||||.+++|++++||.+.|.+.|.+|
T Consensus 148 ~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~--~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkm 225 (527)
T KOG0364|consen 148 AKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVE--NGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKM 225 (527)
T ss_pred HHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhc--cCceechhhhccccccCcccccccceecceeeccccCcHHH
Confidence 5677788888889999999999999999999999876 45579999999999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccc------c---cchhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCC
Q 000298 351 PTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 420 (1706)
Q Consensus 351 ~~~i~nPRILLL~~~LEy~r~~------l---sSle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gI 420 (1706)
++.|+||||.||+|||||.+.+ + .+|.. ++-|+||++.++..|+.++||||++||+||++|++||.++||
T Consensus 226 rr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~i 305 (527)
T KOG0364|consen 226 RRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANI 305 (527)
T ss_pred HHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCc
Confidence 9999999999999999998865 2 36888 999999999999999999999999999999999999999999
Q ss_pred eEEecCChHHHHHHHHHhCCceecccc-CCCCCce-eeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCccccccC
Q 000298 421 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLK-HCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSL 498 (1706)
Q Consensus 421 tvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG-~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~~ 498 (1706)
|.++++++.+..||||++||.|++..+ |.....| .|+.|+++++++ ..|.||..|..|..||
T Consensus 306 T~~rr~rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gd-------------eyf~f~~~Ck~pkaCt--- 369 (527)
T KOG0364|consen 306 TAIRRLRKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGD-------------EYFTFFTDCKEPKACT--- 369 (527)
T ss_pred hhhhhhhccccchhhhhcCceeccChhhCchhccCcccceeeeeccCc-------------hhhhhhhhcCCCcceE---
Confidence 999999999999999999999999999 9999999 699999999865 5899999999999999
Q ss_pred CcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 499 YPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|||||++.++|+|++|-++||+.+++|.++++++++||||+++-
T Consensus 370 ------------------------illrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMA 413 (527)
T KOG0364|consen 370 ------------------------ILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMA 413 (527)
T ss_pred ------------------------EEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHH
Confidence 99999999999999999999999999999999999999999975
No 12
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.6e-37 Score=384.04 Aligned_cols=255 Identities=24% Similarity=0.367 Sum_probs=238.3
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~M 350 (1706)
..|++.+.+++++|....|.+.|++|+++|+..+.++......+|+ ++|+|+|++||+++||++++|+||+++++|+.|
T Consensus 144 ~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m 222 (517)
T cd03343 144 DTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDL-DNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGM 222 (517)
T ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccH-HHeeEEeecCcCHHHcceeeeEEEeccCCCCCC
Confidence 5678889999999999999999999999999999764222236898 499999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccc------cc---chhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCC
Q 000298 351 PTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 420 (1706)
Q Consensus 351 ~~~i~nPRILLL~~~LEy~r~~------ls---Sle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gI 420 (1706)
++.++||||||++++|||++.+ +. ++++ +++|++|++++|++|+..+|+||+++++|++.|++||.++||
T Consensus 223 ~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI 302 (517)
T cd03343 223 PKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGI 302 (517)
T ss_pred ccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCc
Confidence 9999999999999999999876 33 4777 899999999999999999999999999999999999999999
Q ss_pred eEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCccccccCC
Q 000298 421 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSLY 499 (1706)
Q Consensus 421 tvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~~~ 499 (1706)
++++++++.+|+|||++|||+++++++ ++...||+|+.|++++++. ++|++|+||..+.+||
T Consensus 303 ~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~T---- 365 (517)
T cd03343 303 LAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGD-------------DKMVFVEGCKNPKAVT---- 365 (517)
T ss_pred EEEEeCCHHHHHHHHHHhCCEEecchhhCChhhCCccceEEEEEECC-------------eEEEEEEcCCCCceEE----
Confidence 999999999999999999999999999 9999999999999999743 6899999999999999
Q ss_pred cchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 500 PMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||++..+|+++||+++||++++++++.++++|+|||+++..
T Consensus 366 -----------------------I~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ 409 (517)
T cd03343 366 -----------------------ILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIE 409 (517)
T ss_pred -----------------------EEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHH
Confidence 99999999999999999999999999999999999999999875
No 13
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-36 Score=381.10 Aligned_cols=256 Identities=19% Similarity=0.294 Sum_probs=237.5
Q ss_pred HHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCC
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~ 349 (1706)
...|++.+.+++++|....|.+.|+.++++|+..+.... +..+|+ ++|+|+|++||++.||++++|++|+++++|+.
T Consensus 153 ~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~--~~~~d~-~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~ 229 (526)
T cd03339 153 KEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLE--RKDVNF-ELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQ 229 (526)
T ss_pred HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcC--CCccch-HHeEEEEecCcCHHHcceeeeEEEecccCCCC
Confidence 356888999999999999999999999999999986422 235677 49999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCccc------c---cchhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcC
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1706)
Q Consensus 350 M~~~i~nPRILLL~~~LEy~r~~------l---sSle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~g 419 (1706)
|++.++||||+|+.++|||++.+ + .+++. +++|++|++.++++|++.+++||+++++|++.|+++|.++|
T Consensus 230 m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~ 309 (526)
T cd03339 230 MPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG 309 (526)
T ss_pred CCceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC
Confidence 99999999999999999998765 2 35677 89999999999999999999999999999999999999999
Q ss_pred CeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCccccccC
Q 000298 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSL 498 (1706)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~~ 498 (1706)
|++++++++.+|+|||++|||.++++++ ++..+||+|+.|++++|+. ..++++||+||+.+.+||
T Consensus 310 I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~-----------~~~~~~~i~g~~~~~~~T--- 375 (526)
T cd03339 310 LPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGT-----------TKDKMLVIEGCPNSKAVT--- 375 (526)
T ss_pred CEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhcccCceEEEEEecC-----------CCcEEEEEECCCCCCEEE---
Confidence 9999999999999999999999999999 9999999999999999743 247899999999999999
Q ss_pred CcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 499 YPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||+|..+|+|+||+++||++++++++.++++|+||||++..
T Consensus 376 ------------------------IllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ 419 (526)
T cd03339 376 ------------------------IFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEIS 419 (526)
T ss_pred ------------------------EEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999999875
No 14
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-35 Score=371.97 Aligned_cols=255 Identities=19% Similarity=0.252 Sum_probs=234.4
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCC-CccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g-~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~ 349 (1706)
..|++.+.+++++|....|.+.|++|+++|+..++.....| ..+|++ +|+|++++||+..||++++|+||+++++|.+
T Consensus 138 ~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~-~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~ 216 (527)
T cd03335 138 ESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIK-AVNILKAHGKSAKESYLVNGYALNCTRASQG 216 (527)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHH-HeEEEEecCcChhhcceeeeEEEecccCCCC
Confidence 45788899999999999999999999999999996421222 257885 8999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCcccc---------cchhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcC
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSGL---------SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1706)
Q Consensus 350 M~~~i~nPRILLL~~~LEy~r~~l---------sSle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~g 419 (1706)
|+++++||||||++++|++.+.+. ..++. .++|+++++.++++|++.|++||+++++|++.|++||.++|
T Consensus 217 m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~ 296 (527)
T cd03335 217 MPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAG 296 (527)
T ss_pred CcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC
Confidence 999999999999999999988762 46778 89999999999999999999999999999999999999999
Q ss_pred CeEEecCChHHHHHHHHHhCCceecccc-CC------CCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCc
Q 000298 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LT------SQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRL 492 (1706)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~------~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~ 492 (1706)
|++++++++.+|+|||++|||+|+++++ ++ +..||+|+.|+++++++ ++|++|+||....
T Consensus 297 I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~g~~~~~ 363 (527)
T cd03335 297 AMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGD-------------DELILIKGTKKRS 363 (527)
T ss_pred cEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECC-------------eEEEEEEcCCCCC
Confidence 9999999999999999999999999986 63 34799999999999743 6899999999999
Q ss_pred cccccCCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 493 GCTVSLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 493 gcT~~~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
+|| |+|||+|..+|+++||+++||++++++++.++++|+|||+++..
T Consensus 364 ~~T---------------------------IllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ 410 (527)
T cd03335 364 SAS---------------------------IILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETA 410 (527)
T ss_pred EEE---------------------------EEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHH
Confidence 999 99999999999999999999999999999999999999999875
No 15
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.6e-35 Score=366.31 Aligned_cols=249 Identities=23% Similarity=0.350 Sum_probs=231.9
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCC--
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK-- 348 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk-- 348 (1706)
..|++.+.+++++|....|.+.|++|+++|+..+.+ ..|+ ++|+|++++||++.||++++|+||++++++.
T Consensus 149 ~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~ 221 (522)
T cd03340 149 ELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDD------DLDL-DMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGF 221 (522)
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcc------cCCh-hHheEeeecCCChhhceeeeeEEEecccCcccc
Confidence 448889999999999999999999999999999965 2466 5999999999999999999999999999965
Q ss_pred -CCCccccCCcEEEEeeecccCccc------ccc---hhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHH
Q 000298 349 -HMPTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILE 417 (1706)
Q Consensus 349 -~M~~~i~nPRILLL~~~LEy~r~~------lsS---le~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~ 417 (1706)
.||++++||||||++++|||.+.+ +.+ ++. +++|+++|.+++++|++.|++||+++++|++.|++||.+
T Consensus 222 ~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~ 301 (522)
T cd03340 222 EQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFAD 301 (522)
T ss_pred ccCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHH
Confidence 469999999999999999998764 233 677 799999999999999999999999999999999999999
Q ss_pred cCCeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCccccc
Q 000298 418 KGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTV 496 (1706)
Q Consensus 418 ~gItvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~ 496 (1706)
+||+++.+|++.+|+|||++|||+++++++ +++..||+|+.|++++++ .++|+||+||+.+.+||
T Consensus 302 ~~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~T- 367 (522)
T cd03340 302 RDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVG-------------GERYNIFTGCPKAKTCT- 367 (522)
T ss_pred CCcEEEEeCCHHHHHHHHHHHCCEEeeccccCCccccccceEEEEEEEC-------------CEEEEEEECCCCCceEE-
Confidence 999999999999999999999999999999 999999999999998863 26899999999999999
Q ss_pred cCCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 497 SLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||++..+|+|+||+++||++++++++.++.+|+|||+++..
T Consensus 368 --------------------------IllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ 411 (522)
T cd03340 368 --------------------------IILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEME 411 (522)
T ss_pred --------------------------EEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHH
Confidence 99999999999999999999999999999999999999999875
No 16
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=4.2e-35 Score=326.04 Aligned_cols=206 Identities=32% Similarity=0.427 Sum_probs=194.3
Q ss_pred HHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCCCC
Q 000298 272 QLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMP 351 (1706)
Q Consensus 272 qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~M~ 351 (1706)
.|++.+.+++++|. ..|.+.|++|+++|+..+.++.. ++..+||+|++++||+++||++++|++|+|+++|+.|+
T Consensus 3 ~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~----~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~ 77 (209)
T cd03333 3 LLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNR----MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMP 77 (209)
T ss_pred HHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCC----CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCC
Confidence 46777888999999 99999999999999999987532 55557999999999999999999999999999999999
Q ss_pred ccccCCcEEEEeeecccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCChHHH
Q 000298 352 TEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRL 431 (1706)
Q Consensus 352 ~~i~nPRILLL~~~LEy~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK~~~L 431 (1706)
++++||||||++++||| ||+++++|++.|+++|.++||++++++++.+|
T Consensus 78 ~~~~n~~Ill~~~~le~-------------------------------vii~~~~I~~~al~~l~~~~I~~v~~~~~~~l 126 (209)
T cd03333 78 KRLENAKILLLDCPLEY-------------------------------VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDL 126 (209)
T ss_pred eEcCCCcEEEEeCCeeE-------------------------------EEEecCcccHHHHHHHHHCCCEEEEeCCHHHH
Confidence 99999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCccccccCCcchhhhhhHhh
Q 000298 432 ERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSLYPMIVLFIVLFE 510 (1706)
Q Consensus 432 eRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~~~~~~~~~~~~~~ 510 (1706)
+|||++|||+++++++ ++.++||+|+.|++++++. ++++||+||....+||
T Consensus 127 ~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~t--------------- 178 (209)
T cd03333 127 ERIARATGATIVSSLEDLTPEDLGTAELVEETKIGE-------------EKLTFIEGCKGGKAAT--------------- 178 (209)
T ss_pred HHHHHHHCCEEecccccCChhhceeeeEEEEEEECC-------------eEEEEEEcCCCCCEEE---------------
Confidence 9999999999999999 9999999999999999742 8999999999999999
Q ss_pred hhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhc
Q 000298 511 WLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILE 553 (1706)
Q Consensus 511 ~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE 553 (1706)
|+|||++..+|+++||+++||++++|++++|
T Consensus 179 ------------IllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 179 ------------ILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred ------------EEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999764
No 17
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.9e-35 Score=364.95 Aligned_cols=255 Identities=19% Similarity=0.296 Sum_probs=236.6
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~M 350 (1706)
..|++.+.+++++|....|.+.|+.|+++|+..+... ....+|++ +|+|+|++||+++||++++|++|++.+.|..|
T Consensus 158 ~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~--~~~~~d~~-~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m 234 (532)
T TIGR02343 158 EPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADM--ERRDVDFD-LIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQM 234 (532)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhc--CCCcCCHH-HeeEEEecCCCcccceeEeeEEEecCcCCCCC
Confidence 5688899999999998899999999999999999642 12368884 99999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccc------cc---chhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCC
Q 000298 351 PTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 420 (1706)
Q Consensus 351 ~~~i~nPRILLL~~~LEy~r~~------ls---Sle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gI 420 (1706)
++.++||||+|++++||+++.+ +. +++. +++|+++++.++++|++.|++||+++++|++.|+++|.++||
T Consensus 235 ~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i 314 (532)
T TIGR02343 235 PKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDL 314 (532)
T ss_pred CeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCc
Confidence 9999999999999999999875 23 4666 899999999999999999999999999999999999999999
Q ss_pred eEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCccccccCC
Q 000298 421 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSLY 499 (1706)
Q Consensus 421 tvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~~~ 499 (1706)
.++++++..+|+|||++|||.++++++ ++...||+|+.|+++.++. ..++++||+||+.+..||
T Consensus 315 ~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~-----------~~~~~~~i~~~~~~~~~T---- 379 (532)
T TIGR02343 315 PAVRWVGGHELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGT-----------TKDRMLVIEQCKNSKAVT---- 379 (532)
T ss_pred EEEEcCCHHHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecC-----------CcceEEEEECCCCCCEEE----
Confidence 999999999999999999999999999 9999999999999999853 125899999999989999
Q ss_pred cchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 500 PMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||+|..+|+|+||+++||++++++++.++.+|+||||++..
T Consensus 380 -----------------------IllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ 423 (532)
T TIGR02343 380 -----------------------IFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEIS 423 (532)
T ss_pred -----------------------EEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHH
Confidence 99999999999999999999999999999999999999999875
No 18
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=4.9e-35 Score=366.49 Aligned_cols=249 Identities=20% Similarity=0.260 Sum_probs=232.0
Q ss_pred HHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCC
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~ 349 (1706)
...|++.+++++++|....|.+.|++|+++|+..+.+ .+|+ ++|+|++++||++.||++++|+|+++++.| .
T Consensus 158 ~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~------~~~~-~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~ 229 (533)
T PTZ00212 158 KEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKG------SGNL-DYIQIIKKPGGTLRDSYLEDGFILEKKIGV-G 229 (533)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhc------cCCc-cceEEEEecCcCccccEEEEeEEEecccCC-C
Confidence 3568899999999999999999999999999999964 2566 489999999999999999999999999988 5
Q ss_pred CCccccCCcEEEEeeecccCcccc-------c---chhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHc
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSGL-------S---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 418 (1706)
Q Consensus 350 M~~~i~nPRILLL~~~LEy~r~~l-------s---Sle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~ 418 (1706)
|+++++||||||++++|||++.+. . ++.. .++|++++++++.+|++.++++|+++++|++.|+++|.++
T Consensus 230 ~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~ 309 (533)
T PTZ00212 230 QPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEA 309 (533)
T ss_pred CCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC
Confidence 899999999999999999998762 3 4666 7899999999999999999999999999999999999999
Q ss_pred CCeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCcccccc
Q 000298 419 GMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVS 497 (1706)
Q Consensus 419 gItvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~ 497 (1706)
||++++++++.+|+|||++|||.++++++ +++.+||+|+.|+++.++ .++|++|+||+...+||
T Consensus 310 ~I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~T-- 374 (533)
T PTZ00212 310 GIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIG-------------EDKLIRFSGCAKGEACT-- 374 (533)
T ss_pred CCEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEEC-------------CeEEEEEEccCCCCEEE--
Confidence 99999999999999999999999999999 998999999999988763 26899999999999999
Q ss_pred CCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 498 LYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||+|..+|+|+||.++||++++++++.++.+|+||||++..
T Consensus 375 -------------------------I~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ 418 (533)
T PTZ00212 375 -------------------------IVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEML 418 (533)
T ss_pred -------------------------EEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHH
Confidence 99999999999999999999999999999999999999999875
No 19
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.4e-35 Score=364.01 Aligned_cols=254 Identities=19% Similarity=0.261 Sum_probs=235.6
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCC-
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH- 349 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~- 349 (1706)
..|++.+.+++++|....|.+.|++|+++|+..|.++. .++.+|++ .|+|.++.||+++||++++|++|+++++|+.
T Consensus 137 ~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~-~~~~~d~~-~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~ 214 (515)
T cd03338 137 ESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPA-TATNVDLK-DIRIVKKLGGTIEDTELVDGLVFTQKASKKAG 214 (515)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhccc-ccCcCCHH-HeEEEEecCCChhhceeeeeEEEeccccCcCC
Confidence 46888899999999999999999999999999998643 22478985 8999999999999999999999999999987
Q ss_pred CCccccCCcEEEEeeecccCccc------c---cchhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCc-----CHHHHHH
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTV-----SRDIQES 414 (1706)
Q Consensus 350 M~~~i~nPRILLL~~~LEy~r~~------l---sSle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksV-----s~~A~~~ 414 (1706)
||+.++||||++|+|+|||.+.+ + .+++. +++|+++++.++++|++.|++||+++++| +++|+++
T Consensus 215 ~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~ 294 (515)
T cd03338 215 GPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHF 294 (515)
T ss_pred CCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHH
Confidence 49999999999999999998765 2 36778 89999999999999999999999999987 9999999
Q ss_pred HHHcCCeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCC-Cc
Q 000298 415 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT-RL 492 (1706)
Q Consensus 415 L~~~gItvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~-~~ 492 (1706)
|.++||.+++++++.+|+|||++|||+++++++ ++...||+|+.|++++++. ++|+||+||+. +.
T Consensus 295 l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~-------------~~~~~i~~~~~~~~ 361 (515)
T cd03338 295 LAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGD-------------GKIVKITGVKNPGK 361 (515)
T ss_pred HHHCCceEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECC-------------eEEEEEEecCCCCc
Confidence 999999999999999999999999999999999 9989999999999999732 68999999997 68
Q ss_pred cccccCCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 493 GCTVSLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 493 gcT~~~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
+|| |+|||+|..+|+|+||+++||++++++++.++++|+|||+++..
T Consensus 362 ~~T---------------------------IllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ 408 (515)
T cd03338 362 TVT---------------------------ILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIE 408 (515)
T ss_pred eEE---------------------------EEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHH
Confidence 999 99999999999999999999999999999999999999999875
No 20
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-34 Score=361.63 Aligned_cols=254 Identities=20% Similarity=0.261 Sum_probs=234.8
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCC-CC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAH-KH 349 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvah-k~ 349 (1706)
.+|++.+.+++++|....|.+.|+.|+++|+..+.++. .++.+|+ +.|+|+++.||+..||++++|++|++++.| ++
T Consensus 138 ~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~-~~~~~~~-~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~ 215 (517)
T TIGR02342 138 EILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPE-NDKNVDL-NDIKVVKKLGGTIDDTELIEGLVFTQKASRSAG 215 (517)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccc-cCCccCH-HHeeEEeccCCChhhcEEEeeEEEeccccccCC
Confidence 46889999999999999999999999999999997632 2336888 499999999999999999999999999999 69
Q ss_pred CCccccCCcEEEEeeecccCccc------c---cchhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCc-----CHHHHHH
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTV-----SRDIQES 414 (1706)
Q Consensus 350 M~~~i~nPRILLL~~~LEy~r~~------l---sSle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksV-----s~~A~~~ 414 (1706)
||++++||||++++++|++.+.+ + .+++. +++|+++++.++++|++.|++||+++++| +++|+++
T Consensus 216 mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~ 295 (517)
T TIGR02342 216 GPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHF 295 (517)
T ss_pred CCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHH
Confidence 99999999999999999998765 2 35688 99999999999999999999999999998 9999999
Q ss_pred HHHcCCeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCC-c
Q 000298 415 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTR-L 492 (1706)
Q Consensus 415 L~~~gItvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~-~ 492 (1706)
|.++||.+++++++.+|+|||++|||+++++++ ++..+||+|+.|++++++ .++|++|+||+.. .
T Consensus 296 l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~-------------~~~~~~i~~~~~~~~ 362 (517)
T TIGR02342 296 LAKMKIMVVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTD-------------GGKIIKITGIQNAGK 362 (517)
T ss_pred HhhCCceEEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEEC-------------CeEEEEEEccCCCCc
Confidence 999999999999999999999999999999999 999999999999987753 2689999999874 7
Q ss_pred cccccCCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 493 GCTVSLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 493 gcT~~~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
.|| |+|||+|..+++|+||+++||++++++++.++.+|+||||++..
T Consensus 363 ~~t---------------------------IllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ 409 (517)
T TIGR02342 363 TVT---------------------------VLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIE 409 (517)
T ss_pred eEE---------------------------EEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHH
Confidence 888 99999999999999999999999999999999999999999875
No 21
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.4e-34 Score=359.25 Aligned_cols=249 Identities=18% Similarity=0.203 Sum_probs=232.1
Q ss_pred HHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCC
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~ 349 (1706)
...|++.+++++++|....|.+.|++|+++|+..+.. .+|+ ++|+|++++||++.||++++|+|+++.+.| .
T Consensus 146 ~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~ 217 (517)
T cd03336 146 REDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKG------SGNL-DAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-N 217 (517)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhc------cCCc-cceeEEEccCCCccceEEEeeEEEecccCC-C
Confidence 3578899999999999999999999999999999853 3566 489999999999999999999999999887 5
Q ss_pred CCccccCCcEEEEeeecccCccc----------ccchhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHc
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSG----------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 418 (1706)
Q Consensus 350 M~~~i~nPRILLL~~~LEy~r~~----------lsSle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~ 418 (1706)
|+++++||||||++++|||++.+ +.+++. .++|++++++++.+|++.++++|+++++|++.|++||.++
T Consensus 218 ~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~ 297 (517)
T cd03336 218 QPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA 297 (517)
T ss_pred CCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC
Confidence 89999999999999999998875 235666 8999999999999999999999999999999999999999
Q ss_pred CCeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCcccccc
Q 000298 419 GMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVS 497 (1706)
Q Consensus 419 gItvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~ 497 (1706)
||+++++++..+|+|||++|||.++++++ +++.+||+|+.|++..++ .++|++|+||+.+.+||
T Consensus 298 ~I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~T-- 362 (517)
T cd03336 298 GIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIG-------------EDKLIRFSGVAAGEACT-- 362 (517)
T ss_pred CcEEEecCCHHHHHHHHHHhCCEEecccCCCCcccccccceEEEEEEC-------------CeEEEEEEccCCCceEE--
Confidence 99999999999999999999999999999 999999999999988763 27899999999999999
Q ss_pred CCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 498 LYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||+|..+|+|+||+++||++++++++.++.+|+||||++..
T Consensus 363 -------------------------I~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ 406 (517)
T cd03336 363 -------------------------IVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEML 406 (517)
T ss_pred -------------------------EEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999999875
No 22
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-34 Score=359.21 Aligned_cols=225 Identities=26% Similarity=0.439 Sum_probs=210.5
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCC-CccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g-~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~ 349 (1706)
..|++.+.+++++|..+.|.+.|++|+++|+..+.++.... ..+|+++||+|++++||++.||++++|+||+|+++|++
T Consensus 145 ~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~ 224 (480)
T cd03337 145 AQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPK 224 (480)
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCC
Confidence 55788889999999999999999999999999998864332 36999889999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCChH
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLH 429 (1706)
Q Consensus 350 M~~~i~nPRILLL~~~LEy~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK~~ 429 (1706)
|+++++||||||++|+||| ||+++++|++.|+++|.++||++++++++.
T Consensus 225 m~~~~~n~kIlll~~~Le~-------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~ 273 (480)
T cd03337 225 MRRRIENPRIVLLDCPLEY-------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKT 273 (480)
T ss_pred CCcEecCCCEEEEecCcce-------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHH
Confidence 9999999999999999998 999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceecccc-CCCCCcee-eeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCccccccCCcchhhhhh
Q 000298 430 RLERVARCTGSPILSSGS-LTSQKLKH-CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSLYPMIVLFIV 507 (1706)
Q Consensus 430 ~LeRIAR~TGA~Iv~Sid-L~~~~LG~-C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~~~~~~~~~~~ 507 (1706)
+|+|||++|||+|+++++ ++.+.||+ |+.|+++++. .++++||+||..+.+||
T Consensus 274 ~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~T------------ 328 (480)
T cd03337 274 DNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIG-------------DEYFTFITECKDPKACT------------ 328 (480)
T ss_pred HHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeC-------------CeEEEEEEcCCCCCEEE------------
Confidence 999999999999999999 99999999 6677777653 26899999999999999
Q ss_pred HhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 508 LFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 508 ~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||++..+|+++||+++||++++++++.++.+|+||||++..
T Consensus 329 ---------------IllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ 372 (480)
T cd03337 329 ---------------ILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMA 372 (480)
T ss_pred ---------------EEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999999875
No 23
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8e-34 Score=356.01 Aligned_cols=256 Identities=19% Similarity=0.252 Sum_probs=234.0
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCC-CccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g-~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~ 349 (1706)
..|++.+.+++++|....|.+.|++|+++|+..++.+...| ..+|++ +|+|+|++||+..||++++|++|++...|.+
T Consensus 142 ~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~-~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~ 220 (536)
T TIGR02340 142 EALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIK-AVNILKAHGGSARESYLVKGYALNCTRASQQ 220 (536)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchH-HeEEEEecCCCccccEEEEEEEEecccCCCC
Confidence 45788899999999999999999999999999996321122 257884 9999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCcccc---------cchhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcC
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSGL---------SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1706)
Q Consensus 350 M~~~i~nPRILLL~~~LEy~r~~l---------sSle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~g 419 (1706)
|+++++||||||++++|++.+.++ ..++. .++|+++++..+++|++.+++||+++++|++.|++||.++|
T Consensus 221 m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~ 300 (536)
T TIGR02340 221 MPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG 300 (536)
T ss_pred CcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC
Confidence 999999999999999999998662 46778 89999999999999999999999999999999999999999
Q ss_pred CeEEecCChHHHHHHHHHhCCceecccc-C------CCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCc
Q 000298 420 MTLVFDMKLHRLERVARCTGSPILSSGS-L------TSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRL 492 (1706)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~Iv~Sid-L------~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~ 492 (1706)
|.+++++++.+|+|||++|||.++++++ + +...||+|+.|++++++. ++|++|+||..+.
T Consensus 301 I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~ 367 (536)
T TIGR02340 301 AMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIAD-------------DECILIKGTKGRK 367 (536)
T ss_pred cEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECC-------------eEEEEEEcCCCCC
Confidence 9999999999999999999999999986 5 344599999999999743 6799999999888
Q ss_pred cccccCCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeeccC
Q 000298 493 GCTVSLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 567 (1706)
Q Consensus 493 gcT~~~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~~ 567 (1706)
+|| |+|||+|..+++|+||.++||++++++++.++++|+|||+++...
T Consensus 368 ~~T---------------------------IlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~l 415 (536)
T TIGR02340 368 SAS---------------------------IILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETAL 415 (536)
T ss_pred EEE---------------------------EEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHH
Confidence 999 999999999999999999999999999999999999999998753
No 24
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.9e-34 Score=355.01 Aligned_cols=252 Identities=22% Similarity=0.303 Sum_probs=233.9
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~M 350 (1706)
..|++.+.+++++|....|.+.|++|+++|+..+.++ +..+|++ .|+|+|+.||+..||++++|++|.+.+.|..|
T Consensus 146 ~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~---~~~i~~~-~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~ 221 (531)
T TIGR02347 146 ELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKD---GEQIDLF-MVEIMEMKHKSATDTTLIRGLVLDHGARHPDM 221 (531)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhc---CCCCChh-HeEEEEecCCCccccEEEeeEEEecCcCCCCC
Confidence 5688889999999999999999999999999999863 2247774 79999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccc------c---cchhh-HHHHHHHHHHHHHHHhcCC-------Cc---EEEEccCcCHH
Q 000298 351 PTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCH-------PN---VVLVEKTVSRD 410 (1706)
Q Consensus 351 ~~~i~nPRILLL~~~LEy~r~~------l---sSle~-i~qE~eyL~~lV~rI~~~~-------pn---VVLVeksVs~~ 410 (1706)
++++.||||||++++||+.+++ + ..+.. +++|++|++.++++|+.++ |+ ||+++++|++.
T Consensus 222 ~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~ 301 (531)
T TIGR02347 222 PRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPP 301 (531)
T ss_pred ceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHH
Confidence 9999999999999999999865 2 24677 9999999999999999976 46 99999999999
Q ss_pred HHHHHHHcCCeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCC
Q 000298 411 IQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCP 489 (1706)
Q Consensus 411 A~~~L~~~gItvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~ 489 (1706)
|++||.++||++++++++.+|+|||++|||.++++++ +++..||+|+.|+++.++. +.|++|+||.
T Consensus 302 a~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~ 368 (531)
T TIGR02347 302 SLDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGE-------------EKYTFIEEVK 368 (531)
T ss_pred HHHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECC-------------eEEEEEEcCC
Confidence 9999999999999999999999999999999999999 9999999999999998742 6799999999
Q ss_pred CCccccccCCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 490 TRLGCTVSLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 490 ~~~gcT~~~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
.+..|| |+|||+|..+|+|+||+++||++++++++.++++|+||||++..
T Consensus 369 ~~~~~T---------------------------I~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ 418 (531)
T TIGR02347 369 NPKSCT---------------------------ILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIA 418 (531)
T ss_pred CCCeEE---------------------------EEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHH
Confidence 889999 99999999999999999999999999999999999999999875
No 25
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.6e-34 Score=355.72 Aligned_cols=250 Identities=21% Similarity=0.323 Sum_probs=232.2
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCC--
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK-- 348 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk-- 348 (1706)
..|++.+.+++++|....+.+.|++|+++|+..+.++ .+|++ +|+|+++.||++.||++++|++|++.++|.
T Consensus 149 ~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~-----~~~~~-~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~ 222 (522)
T TIGR02345 149 EVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDID-----DLDLK-LIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGF 222 (522)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhc-----cCChh-HheEEeecCCCHHhcceecceEEecccCcccc
Confidence 4688899999999999999999999999999999753 47774 999999999999999999999999998865
Q ss_pred -CCCccccCCcEEEEeeecccCccc---------ccchhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHH
Q 000298 349 -HMPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILE 417 (1706)
Q Consensus 349 -~M~~~i~nPRILLL~~~LEy~r~~---------lsSle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~ 417 (1706)
.|+++++||||||++++||+.+.+ +..++. ++.|++++++++++|++.|++||+|+++|++.+++||.+
T Consensus 223 ~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~ 302 (522)
T TIGR02345 223 EQQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFAD 302 (522)
T ss_pred ccCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHH
Confidence 469999999999999999998765 234666 799999999999999999999999999999999999999
Q ss_pred cCCeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCccccc
Q 000298 418 KGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTV 496 (1706)
Q Consensus 418 ~gItvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~ 496 (1706)
+||+++.+|+..+|+|||++|||+|+++++ +++..||+|+.|+++++. .++|++|+||+.+.+||
T Consensus 303 ~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~-------------~~r~~~~~g~~~~~~~T- 368 (522)
T TIGR02345 303 HNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIG-------------SERYNYFTGCPHAKTCT- 368 (522)
T ss_pred CCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEEC-------------CeEEEEEEcCCCCceEE-
Confidence 999999999999999999999999999999 998999999999988863 37899999999999999
Q ss_pred cCCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 497 SLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||+|..+|+++||+++||++++++++.++.+|+|||+++..
T Consensus 369 --------------------------I~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ 412 (522)
T TIGR02345 369 --------------------------IILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEME 412 (522)
T ss_pred --------------------------EEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999999875
No 26
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.7e-32 Score=339.57 Aligned_cols=248 Identities=19% Similarity=0.228 Sum_probs=229.3
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~M 350 (1706)
..|++.+++++++|....|.+.|+.|+++|+..+... .|++ .|+|.+++||++.||++++|+|+.+.+.| .|
T Consensus 148 ~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~------~~~~-~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~ 219 (519)
T TIGR02341 148 DDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGS------GNLD-AIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQ 219 (519)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccC------CChh-heEEEEccCCCcccceEEeeEEEeccCCC-CC
Confidence 5688999999999999999999999999999999541 2553 69999999999999999999999999887 68
Q ss_pred CccccCCcEEEEeeecccCcccc-------cc---hhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcC
Q 000298 351 PTEYKNPRLLLIRGVLGLSSSGL-------SS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1706)
Q Consensus 351 ~~~i~nPRILLL~~~LEy~r~~l-------sS---le~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~g 419 (1706)
+++++||||++++++||+.+.+. .+ +.. .+.|+++++.++..|++.++++|++++.|++.|+++|.++|
T Consensus 220 ~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~ 299 (519)
T TIGR02341 220 PKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAG 299 (519)
T ss_pred ceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCC
Confidence 99999999999999999987552 23 666 88999999999999999999999999999999999999999
Q ss_pred CeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCccccccC
Q 000298 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSL 498 (1706)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~~ 498 (1706)
|.++++++..+|+|||++|||.++++++ ++..+||+|+.|++..++ .+.|++|+||+.+..||
T Consensus 300 I~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~T--- 363 (519)
T TIGR02341 300 VMAIEHADFEGIERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIG-------------EDKLLKFSGVKLGEACT--- 363 (519)
T ss_pred cEEEecCCHHHHHHHHHHhCCEEecccccCCccccccCceEEEEEEC-------------CEEEEEEEcCCCCCEEE---
Confidence 9999999999999999999999999999 998899999999987763 26899999999989999
Q ss_pred CcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 499 YPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||+|..+|+|+||+++||++++++++.++.+|+||||++..
T Consensus 364 ------------------------IllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ 407 (519)
T TIGR02341 364 ------------------------IVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEML 407 (519)
T ss_pred ------------------------EEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999999875
No 27
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.1e-32 Score=308.53 Aligned_cols=249 Identities=21% Similarity=0.337 Sum_probs=231.3
Q ss_pred HHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCC---
Q 000298 272 QLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK--- 348 (1706)
Q Consensus 272 qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk--- 348 (1706)
-|.+.+.|+++||.+....++|+.++++|+..+.. ..|. +.|-||||+||.+.||.+|+||.|+|.+...
T Consensus 154 lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~------~l~~-~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfE 226 (543)
T KOG0361|consen 154 LLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDN------DLDL-NMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFE 226 (543)
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcc------ccch-hhcceeecCCCccchhhhccceeeeehccccchh
Confidence 35678889999999999999999999999998863 3455 5999999999999999999999999998876
Q ss_pred CCCccccCCcEEEEeeecccCccc---------ccchhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHc
Q 000298 349 HMPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 418 (1706)
Q Consensus 349 ~M~~~i~nPRILLL~~~LEy~r~~---------lsSle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~ 418 (1706)
+.|+++.|||||+|+-.||..... ...++. +..|+..|...+++|+..|.||||..-.|.++|.+||.++
T Consensus 227 qqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdr 306 (543)
T KOG0361|consen 227 QQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADR 306 (543)
T ss_pred hCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhcc
Confidence 458999999999999999986432 567888 9999999999999999999999999999999999999999
Q ss_pred CCeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCcccccc
Q 000298 419 GMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVS 497 (1706)
Q Consensus 419 gItvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~ 497 (1706)
+|.+..+|...+|.|+..++|+.|.++.. +....||+|+.|+.++++. ..|-||+|||+...||
T Consensus 307 diFCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~-------------eRyN~Fegcp~aktcT-- 371 (543)
T KOG0361|consen 307 DIFCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGG-------------ERYNLFEGCPKAKTCT-- 371 (543)
T ss_pred CceecCcCCHHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcc-------------hhhhhhcCCCccceeE--
Confidence 99999999999999999999999999999 9999999999999998743 5799999999999999
Q ss_pred CCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeeccC
Q 000298 498 LYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 567 (1706)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~~ 567 (1706)
++|||+-++.++|++|.+|||++++++.+++.++++||||++++.
T Consensus 372 -------------------------liLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMEl 416 (543)
T KOG0361|consen 372 -------------------------LILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMEL 416 (543)
T ss_pred -------------------------EEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehH
Confidence 999999999999999999999999999999999999999999874
No 28
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.97 E-value=2.6e-31 Score=329.58 Aligned_cols=232 Identities=21% Similarity=0.311 Sum_probs=214.1
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~M 350 (1706)
..|++.+.+++++|....|.+.|++|+++|+..+.++ ++.+|++ .|+|++++||+..||++++|++|++.++|+.|
T Consensus 142 ~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~---~~~~~~~-~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m 217 (484)
T cd03342 142 ELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKP---DEPIDLH-MVEIMQMQHKSDSDTKLIRGLVLDHGARHPDM 217 (484)
T ss_pred HHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhc---CCccChh-HeEEEEecCCChhhceEEeeEEEecCCCCCCC
Confidence 5688899999999999999999999999999999863 3468884 89999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccccc-chhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCChH
Q 000298 351 PTEYKNPRLLLIRGVLGLSSSGLS-SFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLH 429 (1706)
Q Consensus 351 ~~~i~nPRILLL~~~LEy~r~~ls-Sle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK~~ 429 (1706)
++++.||||+|++++|++.+.++. .+. .+||+++++|++.|+++|.++||.+++++++.
T Consensus 218 ~~~~~n~~Ill~~~~le~~~~~~~~~~~--------------------~~lvi~~~~I~~~al~~l~~~~I~av~~~~~~ 277 (484)
T cd03342 218 PKRVENAYILTCNVSLEYEKTEVNSGFF--------------------YSVVINQKGIDPPSLDMLAKEGILALRRAKRR 277 (484)
T ss_pred CccccCceEEEEeCCCCCCccccCcEEE--------------------EEEEEeCCCccHHHHHHHHHCCCeEEEeCCHH
Confidence 999999999999999999987622 110 12999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCccccccCCcchhhhhhH
Q 000298 430 RLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSLYPMIVLFIVL 508 (1706)
Q Consensus 430 ~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~~~~~~~~~~~~ 508 (1706)
+|+|||++|||.++++++ +++..||+|+.|+++.++. ++|+||+||..+..||
T Consensus 278 ~l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~t------------- 331 (484)
T cd03342 278 NMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGE-------------EKYTFIEGVKNPKSCT------------- 331 (484)
T ss_pred HHHHHHHHhCCEEecccccCChhhCcccceEEEEEECC-------------eEEEEEECCCCCcEEE-------------
Confidence 999999999999999999 9999999999999988732 6799999999999999
Q ss_pred hhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 509 FEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 509 ~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||+|..+|+|+||+++||++++++++.++++|+||||++..
T Consensus 332 --------------I~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ 375 (484)
T cd03342 332 --------------ILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVA 375 (484)
T ss_pred --------------EEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999999875
No 29
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.97 E-value=3.3e-31 Score=327.59 Aligned_cols=221 Identities=25% Similarity=0.317 Sum_probs=209.6
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~M 350 (1706)
.+|++.+.+++++|....|.+.|++|+++|+..+.++.. .+|. ++|+|++++||++.||++++|++|+|++.|+.|
T Consensus 137 ~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~---~~~~-~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m 212 (464)
T cd00309 137 EELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENG---DVDL-GVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM 212 (464)
T ss_pred HHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccC---cccc-ceEEEEecCCCCcccceeeeeEEEecCCCCCCC
Confidence 568899999999999999999999999999999987542 4555 699999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCChHH
Q 000298 351 PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHR 430 (1706)
Q Consensus 351 ~~~i~nPRILLL~~~LEy~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK~~~ 430 (1706)
++.++||||+|++++|+| ||+++++|++.|+++|.++||++++++++.+
T Consensus 213 ~~~~~n~~Ili~~~~Le~-------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~ 261 (464)
T cd00309 213 PKRLENAKILLLDCKLEY-------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKED 261 (464)
T ss_pred ceeecCceEEEEecCcce-------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHH
Confidence 999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCccccccCCcchhhhhhHh
Q 000298 431 LERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSLYPMIVLFIVLF 509 (1706)
Q Consensus 431 LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~~~~~~~~~~~~~ 509 (1706)
|+|||++|||+++++++ ++...||+|+.|++.+++ .++|++|+||+...+||
T Consensus 262 L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g-------------~~~~~~~~~~~~~~~~T-------------- 314 (464)
T cd00309 262 LERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIG-------------DEKYTFIEGCKGGKVAT-------------- 314 (464)
T ss_pred HHHHHHHhCCEEecccccCCcccCccccEEEEEEEc-------------CeeEEEEEecCCCCEEE--------------
Confidence 99999999999999999 999999999999999974 27899999999889999
Q ss_pred hhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 510 EWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 510 ~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||++..+|+++||+++||++++++++.++.|++|||+++..
T Consensus 315 -------------IllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ 358 (464)
T cd00309 315 -------------ILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIE 358 (464)
T ss_pred -------------EEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHH
Confidence 99999999999999999999999999999999999999999875
No 30
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.97 E-value=1.4e-30 Score=322.58 Aligned_cols=249 Identities=27% Similarity=0.426 Sum_probs=232.1
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~M 350 (1706)
..|++.+.+++++|....|.+.|++|+++|+..+..+ +|+. .++|+++.||+.+||++++|++|++.++|.+|
T Consensus 117 ~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~------~~~~-~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~ 189 (485)
T PF00118_consen 117 ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSN------FDLD-NIKIIKIPGGSISDSELINGIVLDKGFSSPNM 189 (485)
T ss_dssp HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTT------HHGG-GEEEEEEESSSSGGEEEESEEEESSSBSSTTS
T ss_pred hhhhhhhcccccccccccchhhhhhhHHHHHHhhccc------cccc-chhhhhhccccccccccccceeeecccccccc
Confidence 6788999999999999999999999999999555432 6775 59999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCcc-c-------ccchhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCCe
Q 000298 351 PTEYKNPRLLLIRGVLGLSSS-G-------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMT 421 (1706)
Q Consensus 351 ~~~i~nPRILLL~~~LEy~r~-~-------lsSle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gIt 421 (1706)
+++++||||++++++|++.+. . ...++. .++|+++++.++++|.+.+++|||++++|++.|+++|.++||.
T Consensus 190 ~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~ 269 (485)
T PF00118_consen 190 PKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGIL 269 (485)
T ss_dssp BSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHE
T ss_pred ccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhhh
Confidence 999999999999999999876 1 346888 9999999999999999999999999999999999999999999
Q ss_pred EEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEE--cCCCCccccccC
Q 000298 422 LVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE--GCPTRLGCTVSL 498 (1706)
Q Consensus 422 vv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffe--Gc~~~~gcT~~~ 498 (1706)
++.+|+..+|+|||++|||.++++++ +.+..+|+|+.+++..+.. +.|++|+ +|.....||
T Consensus 270 ~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~-------------~~~~~~~~~~~~~~~~~T--- 333 (485)
T PF00118_consen 270 VIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIGN-------------KKYIFIEGIGCLSSKICT--- 333 (485)
T ss_dssp EESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEETS-------------SEEEEEEEHSESSSSEEE---
T ss_pred ccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhccccc-------------ccccccccccccccCceE---
Confidence 99999999999999999999999999 9888899999998888732 7899999 698999999
Q ss_pred CcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 499 YPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||++..+++++||++++|++++++++.++.+++|||+++..
T Consensus 334 ------------------------ill~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~ 377 (485)
T PF00118_consen 334 ------------------------ILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELH 377 (485)
T ss_dssp ------------------------EEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHH
T ss_pred ------------------------EEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhh
Confidence 99999999999999999999999999999999999999999875
No 31
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.97 E-value=1.7e-30 Score=325.59 Aligned_cols=250 Identities=19% Similarity=0.268 Sum_probs=227.7
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~M 350 (1706)
..|++.+++++++|.... .+.|++|+++|+..+.++. .+.+|++ .|+|+|++||+.+||++++|++|++... .|
T Consensus 149 ~~l~~i~~tsl~sK~~~~-~~~ls~l~~~Ai~~v~~~~--~~~~~~~-~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~ 222 (531)
T TIGR02346 149 KELIKALKASISSKQYGN-EDFLAQLVAKACSTVMPKN--PENFNVD-NIRVSKIMGGSISNSEVLKGMVFNREAE--GS 222 (531)
T ss_pred HHHHHHHHHHhccccCch-HHHHHHHHHHHHHHHhhcC--CCcCChh-HeeEEEecCCChhhceeEeeeEEeccCC--CC
Confidence 457788888899998877 9999999999999998642 2358884 8999999999999999999999999954 58
Q ss_pred CccccCCcEEEEeeecccCccc------ccc---hhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCC
Q 000298 351 PTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 420 (1706)
Q Consensus 351 ~~~i~nPRILLL~~~LEy~r~~------lsS---le~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gI 420 (1706)
|+.++||||+|+.+||++.+.+ +.+ +.. .+.|.++++.++++|++.|++||+++++|++.|+++|.++||
T Consensus 223 ~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I 302 (531)
T TIGR02346 223 VKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNI 302 (531)
T ss_pred ceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCc
Confidence 9999999999999999998765 333 666 788999999999999999999999999999999999999999
Q ss_pred eEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCC-CCccccccC
Q 000298 421 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCP-TRLGCTVSL 498 (1706)
Q Consensus 421 tvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~-~~~gcT~~~ 498 (1706)
.++++++..+|+|||++|||.++++++ ++...||+|+.|++++++. +.|.+|++|. ....||
T Consensus 303 ~av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~i~~~~~~~~~~t--- 366 (531)
T TIGR02346 303 MVLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGG-------------QKVTVFKQENGDSKIST--- 366 (531)
T ss_pred EEEecCCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECC-------------EEEEEEEccCCCCCeEE---
Confidence 999999999999999999999999999 9888999999999998632 4699999998 467888
Q ss_pred CcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 499 YPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||+|..+++|+||.++||++++++++.+..+|+|||+++..
T Consensus 367 ------------------------I~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ 410 (531)
T TIGR02346 367 ------------------------IILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIE 410 (531)
T ss_pred ------------------------EEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHH
Confidence 99999999999999999999999999999999999999999875
No 32
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.97 E-value=2.3e-29 Score=311.54 Aligned_cols=223 Identities=18% Similarity=0.258 Sum_probs=204.8
Q ss_pred HHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCC
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~ 349 (1706)
...|+..+++++.+|... |.+.|++|+++|+..+.++. .+.+|++ .|+|+|++||+..||++++|++|+++.. .
T Consensus 138 ~~~l~~i~~t~l~sk~~~-~~~~l~~l~~~a~~~~~~~~--~~~~~~~-~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~ 211 (472)
T cd03341 138 KEEVSKALKTAIASKQYG-NEDFLSPLVAEACISVLPEN--IGNFNVD-NIRVVKILGGSLEDSKVVRGMVFKREPE--G 211 (472)
T ss_pred HHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHhhcc--CCcCChh-HeEEEEecCCCcccceEEeeEEEccccC--C
Confidence 345777888888898765 89999999999999998752 2468885 8999999999999999999999988765 4
Q ss_pred CCccccCCcEEEEeeecccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCChH
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLH 429 (1706)
Q Consensus 350 M~~~i~nPRILLL~~~LEy~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK~~ 429 (1706)
|+++++||||+|++++|++ +++||+++++|++.|+++|.++||.+++++++.
T Consensus 212 ~~~~~~n~~Ili~~~~Le~----------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~ 263 (472)
T cd03341 212 SVKRVKKAKVAVFSCPFDI----------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKF 263 (472)
T ss_pred CceeccCCcEEEEeccccC----------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHH
Confidence 5689999999999999998 899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCC-CccccccCCcchhhhhh
Q 000298 430 RLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT-RLGCTVSLYPMIVLFIV 507 (1706)
Q Consensus 430 ~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~-~~gcT~~~~~~~~~~~~ 507 (1706)
+|+|||++|||+++++++ ++...||+|+.|++++++ .+.|++|+||.. ..+||
T Consensus 264 ~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~~T------------ 318 (472)
T cd03341 264 ELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIG-------------DTKVVVFRQNKEDSKIAT------------ 318 (472)
T ss_pred HHHHHHHHhCCEEecccccCCHhHCCCceEEEEEEEC-------------CeeEEEEEccCCCCCeEE------------
Confidence 999999999999999999 999999999999999873 278999999987 78899
Q ss_pred HhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 508 LFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 508 ~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+|||++..+++|+||.++||++++++++.++++|+|||+++..
T Consensus 319 ---------------I~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ 362 (472)
T cd03341 319 ---------------IVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIE 362 (472)
T ss_pred ---------------EEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHH
Confidence 99999999999999999999999999999999999999999875
No 33
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-29 Score=288.39 Aligned_cols=256 Identities=18% Similarity=0.248 Sum_probs=231.5
Q ss_pred HHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCC
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~ 349 (1706)
-.+|++.+.|++++|..+.+...|++++++|+..+.... .....|++ .|||.|..||.+.|+++|+|+||++.+....
T Consensus 154 re~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~-~~~nvdlk-dIkivkklGgtvdDte~i~glvl~~~~~~~~ 231 (534)
T KOG0358|consen 154 RESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPE-NATNVDLK-DIKIVKKLGGTVDDTELIKGLVLTQKASKSA 231 (534)
T ss_pred HHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcc-cccccchh-hhhhHHhhCCccchhhhhcceEEeeecccCC
Confidence 357999999999999999999999999999999886432 33467885 8999999999999999999999999988777
Q ss_pred CCccccCCcEEEEeeecccCccc---------ccchhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCc-----CHHHHHH
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTV-----SRDIQES 414 (1706)
Q Consensus 350 M~~~i~nPRILLL~~~LEy~r~~---------lsSle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksV-----s~~A~~~ 414 (1706)
-|++++++||.|++|.|..+++. +..++. ++.|+.||-+++.+|.+.|.||+|+||+| +++|++|
T Consensus 232 gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHf 311 (534)
T KOG0358|consen 232 GPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHF 311 (534)
T ss_pred CcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHH
Confidence 89999999999999999999876 346888 99999999999999999999999999965 8899999
Q ss_pred HHHcCCeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCC-Cc
Q 000298 415 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT-RL 492 (1706)
Q Consensus 415 L~~~gItvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~-~~ 492 (1706)
|.+.+|+|+..+.+.++|.|++.+|+..+.++| ++..+||+++.++...-. ...+++-+.|+.+ ..
T Consensus 312 L~klkimvikdieRediefick~l~c~Pia~id~f~~d~Lg~adlveE~~~~------------G~gkivk~tg~~n~g~ 379 (534)
T KOG0358|consen 312 LAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKLGSADLVEETDSS------------GEGKIVKITGIQNAGR 379 (534)
T ss_pred HHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhcCcchhhhhcccC------------CCccEEEEEEeecCCC
Confidence 999999999999999999999999999999999 999999999987665311 1246899999987 67
Q ss_pred cccccCCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 493 GCTVSLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 493 gcT~~~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
+|| ||+||++.-+|+|.+|.+|||+|+++.|.....+++|||+.+.+
T Consensus 380 tvs---------------------------il~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEie 426 (534)
T KOG0358|consen 380 TVS---------------------------ILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIE 426 (534)
T ss_pred ceE---------------------------EEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchH
Confidence 888 99999999999999999999999999999999999999998775
No 34
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-28 Score=278.29 Aligned_cols=267 Identities=18% Similarity=0.214 Sum_probs=241.1
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCC
Q 000298 252 EEKQRAMEKVVSGK---FKAIVSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAG 328 (1706)
Q Consensus 252 ~~~~~~l~~~~~~h---~~~lv~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GG 328 (1706)
...+++|...+..+ -..+-+.||+.++|+|++|......++|+.|+++|+..++-. -|+ +.|.|.|++||
T Consensus 130 ~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs------~nL-~~IqIIK~~Gg 202 (527)
T KOG0363|consen 130 AAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGS------TNL-EAIQIIKKLGG 202 (527)
T ss_pred HHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCC------CCc-cceeeehhcCC
Confidence 44556666666654 355678999999999999999999999999999999999753 345 37999999999
Q ss_pred CCCCceeEEeEEEeecCCCCCCCccccCCcEEEEeeecccCccc-------ccc---hhh-HHHHHHHHHHHHHHHhcCC
Q 000298 329 SRNQSQIIKGLVFKKHAAHKHMPTEYKNPRLLLIRGVLGLSSSG-------LSS---FKA-MEQEKDQLKSVMDMIDMCH 397 (1706)
Q Consensus 329 s~~dS~vI~GvVf~Knvahk~M~~~i~nPRILLL~~~LEy~r~~-------lsS---le~-i~qE~eyL~~lV~rI~~~~ 397 (1706)
++.||++-.|++++|.+.- +-|++++||||||-+.+++..+++ +.| +.. -..|++-++..|+||...+
T Consensus 203 ~l~dSfLDeGFlL~K~igv-~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hg 281 (527)
T KOG0363|consen 203 KLEDSFLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHG 281 (527)
T ss_pred ccccccccccceeccccCC-CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998864 678999999999999999999887 233 455 6789999999999999999
Q ss_pred CcEEEEccCcCHHHHHHHHHcCCeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCC
Q 000298 398 PNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGK 476 (1706)
Q Consensus 398 pnVVLVeksVs~~A~~~L~~~gItvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~ 476 (1706)
.|+.+...-|.++-.++|..+||..+.+..-.-+||++-+||+.|++.+| ....+||+|+.++...+++
T Consensus 282 iN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGe---------- 351 (527)
T KOG0363|consen 282 INVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGE---------- 351 (527)
T ss_pred CcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCc----------
Confidence 99999999999999999999999999999999999999999999999999 9999999999999888755
Q ss_pred CCCceEEEEEcCCCCccccccCCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeE
Q 000298 477 RPSKTLMFIEGCPTRLGCTVSLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSF 556 (1706)
Q Consensus 477 ~~~Ktl~ffeGc~~~~gcT~~~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~ 556 (1706)
.+++.|.||.-...|| |+|||+++++|+|.+|++|||+|++-....|++.
T Consensus 352 ---d~li~FSGv~~GeAct---------------------------IVlrGat~q~LDEaeRslHDALcVLaqtv~esrv 401 (527)
T KOG0363|consen 352 ---DKLIKFSGVKLGEACT---------------------------IVLRGATQQILDEAERSLHDALCVLAQTVKESRV 401 (527)
T ss_pred ---cceeeecccccccceE---------------------------EEEecccHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 5899999999888999 9999999999999999999999999999999999
Q ss_pred eeCCCeeecc
Q 000298 557 LVDQRAMFST 566 (1706)
Q Consensus 557 l~g~Ga~~~~ 566 (1706)
+.|||+.++-
T Consensus 402 v~GgG~sEm~ 411 (527)
T KOG0363|consen 402 VLGGGCSEML 411 (527)
T ss_pred eecCCcHHHH
Confidence 9999998764
No 35
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.9e-28 Score=281.50 Aligned_cols=253 Identities=19% Similarity=0.265 Sum_probs=236.2
Q ss_pred HHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCC
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~ 349 (1706)
..-|+..+.+++.+|....-.+.+++++++|+..+++ ..+.+|+ ++|+|.+..-++..|+.+|+|+|++++..|..
T Consensus 142 ~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~---~~~~idl-~mveim~mq~~s~~dT~~v~glvLdhg~rHpd 217 (520)
T KOG0359|consen 142 RETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRR---QEEPIDL-FMVEIMEMQHKSLHDTSLVQGLVLDHGARHPD 217 (520)
T ss_pred HHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeecc---CCCCcch-hHHHhhhhccCchhhhHHhhhhhccCCCCCcc
Confidence 4567788899999999999999999999999999983 3557898 59999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCcccc------c---chhh-HHHHHHHHHHHHHHHhcCCCc----EEEEccCcCHHHHHHH
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSGL------S---SFKA-MEQEKDQLKSVMDMIDMCHPN----VVLVEKTVSRDIQESI 415 (1706)
Q Consensus 350 M~~~i~nPRILLL~~~LEy~r~~l------s---Sle~-i~qE~eyL~~lV~rI~~~~pn----VVLVeksVs~~A~~~L 415 (1706)
||++++|+-||+++-+|||.++++ + .-+. ...|++|+...|.+|+.++-. ||+.||+|++..++.|
T Consensus 218 mp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~ 297 (520)
T KOG0359|consen 218 MPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSL 297 (520)
T ss_pred cccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhh
Confidence 999999999999999999999982 2 2344 789999999999999998754 7899999999999999
Q ss_pred HHcCCeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCccc
Q 000298 416 LEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGC 494 (1706)
Q Consensus 416 ~~~gItvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gc 494 (1706)
.+.||..+++.|+..|||+..++|+..++|+| |++..||+|+.+++.++++ .+|+|+|+|+.+..|
T Consensus 298 a~~gIlaLRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGE-------------EkfTFIE~~~~p~S~ 364 (520)
T KOG0359|consen 298 AKSGILALRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGE-------------EKFTFIEKCNNPSSV 364 (520)
T ss_pred hhcchHHHHHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccc-------------eeeEeeecCCCCcce
Confidence 99999999999999999999999999999999 9999999999999999976 579999999999999
Q ss_pred cccCCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 495 TVSLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 495 T~~~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
| ||+||++...+.++|.+++|++.+++|.+.+..+++|+|+++..
T Consensus 365 T---------------------------iLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va 409 (520)
T KOG0359|consen 365 T---------------------------ILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVA 409 (520)
T ss_pred E---------------------------EEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHH
Confidence 9 99999999999999999999999999999999999999999864
No 36
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.1e-27 Score=288.98 Aligned_cols=245 Identities=20% Similarity=0.204 Sum_probs=224.9
Q ss_pred HhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEee-cCCCCCCC-c
Q 000298 275 KSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKK-HAAHKHMP-T 352 (1706)
Q Consensus 275 ~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~K-nvahk~M~-~ 352 (1706)
+.+.+++.+|....+ +.|+.|+++|+..|..... |+ +.|++.+..||...++++++|++|+| .+.|..|| +
T Consensus 142 ~~~~t~v~sk~~~~~-~~i~~lv~~Av~~v~~~~~-----d~-~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~ 214 (524)
T COG0459 142 KIAITSVASKSANSD-EEIGELVVEAVEKVGKEQS-----DL-DGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDK 214 (524)
T ss_pred hhhhheeeeeeccCh-HHHHHHHHHHHHHhccccc-----cc-CCeEEEEecCCCccceEEEeeEEecCCccCCCCCCcc
Confidence 336677888888888 9999999999999987532 66 48999999999999999999999999 99999999 8
Q ss_pred cccCCcEEEEeeecccCccc------c---cchhh-HHHHH-HHHHHHHHHHhcCCCc-EEEEccCcCHHHHHHHHHcCC
Q 000298 353 EYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEK-DQLKSVMDMIDMCHPN-VVLVEKTVSRDIQESILEKGM 420 (1706)
Q Consensus 353 ~i~nPRILLL~~~LEy~r~~------l---sSle~-i~qE~-eyL~~lV~rI~~~~pn-VVLVeksVs~~A~~~L~~~gI 420 (1706)
.++||+|||++++|++.+.. + ..|.. .++|+ ++|+.+|.+|+.-+.| ||++++++++++++||.+.+|
T Consensus 215 ~~e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~I 294 (524)
T COG0459 215 RLENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAI 294 (524)
T ss_pred ccccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcc
Confidence 99999999999999999876 2 24677 78888 9999999999999999 999999999999999999999
Q ss_pred eEEecCChHHH-HHHHHHhCCceecccc-CCCCCcee--eeeEEEEEeecccccccCCCCCCCceEEEEEcCCC--Cccc
Q 000298 421 TLVFDMKLHRL-ERVARCTGSPILSSGS-LTSQKLKH--CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT--RLGC 494 (1706)
Q Consensus 421 tvv~nVK~~~L-eRIAR~TGA~Iv~Sid-L~~~~LG~--C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~--~~gc 494 (1706)
.++++|+.++| +||+++|||.+++.++ ++...+|. |+.++..++.+ ..+.+|++|.. +..|
T Consensus 295 lt~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~-------------~~~~~~~~~~~~~~~~~ 361 (524)
T COG0459 295 LTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGD-------------YDMEKLQERKAKAGGVA 361 (524)
T ss_pred eecceecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccc-------------hhhhhhhhhhhcCCCeE
Confidence 99999999999 8999999999999999 99999999 99999998744 46889999985 6788
Q ss_pred cccCCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 495 TVSLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 495 T~~~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
| |+|||+++.+|++.||.++|||+++++++.|..+++|||+.+..
T Consensus 362 t---------------------------I~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~ 406 (524)
T COG0459 362 T---------------------------ILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIE 406 (524)
T ss_pred E---------------------------EEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHH
Confidence 8 99999999999999999999999999999999999999999875
No 37
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-27 Score=277.89 Aligned_cols=255 Identities=19% Similarity=0.228 Sum_probs=229.8
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~M 350 (1706)
.-|++.+++++++|.+..-.++++.++++|+..++--..+|..+=+-+-|.|.|-+|++..||.++.|..++..++...|
T Consensus 149 ~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m 228 (545)
T KOG0360|consen 149 QILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMM 228 (545)
T ss_pred HHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhcc
Confidence 45889999999999999999999999999999888654455544444689999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccc------cc---chhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCC
Q 000298 351 PTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 420 (1706)
Q Consensus 351 ~~~i~nPRILLL~~~LEy~r~~------ls---Sle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gI 420 (1706)
|.+|+|+||++|.|.|.-.+.. +. .++. .+.|.+..+..+++|++.|+||||++|+|++..++||.++|+
T Consensus 229 ~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veaga 308 (545)
T KOG0360|consen 229 PLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGA 308 (545)
T ss_pred ccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcch
Confidence 9999999999999999877665 23 3566 555667779999999999999999999999999999999999
Q ss_pred eEEecCChHHHHHHHHHhCCceecccc-C------CCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCCCCcc
Q 000298 421 TLVFDMKLHRLERVARCTGSPILSSGS-L------TSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLG 493 (1706)
Q Consensus 421 tvv~nVK~~~LeRIAR~TGA~Iv~Sid-L------~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~g 493 (1706)
+.|++++..+|+|||++|||.+++|+. | .+..+|+|+.|.+++|.+ +.++.+.|.+.. .
T Consensus 309 mAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~d-------------de~ilikg~ka~-~ 374 (545)
T KOG0360|consen 309 MAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGD-------------DELILIKGTKAT-S 374 (545)
T ss_pred hhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhccc-------------ceeEEeccCccc-e
Confidence 999999999999999999999999997 5 356799999999999854 679999998877 8
Q ss_pred ccccCCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 494 CTVSLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 494 cT~~~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+ |+|||+|...++|++|.+|+++++++..+.++++++||||++.-
T Consensus 375 aS---------------------------iILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~a 420 (545)
T KOG0360|consen 375 AS---------------------------IILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETA 420 (545)
T ss_pred ee---------------------------EEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHH
Confidence 99 99999999999999999999999999999999999999999864
No 38
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.89 E-value=2.8e-22 Score=251.61 Aligned_cols=247 Identities=15% Similarity=0.175 Sum_probs=192.7
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCC-
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH- 349 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~- 349 (1706)
..|++.+.+++ .+.+.|++|+++|+..+.++ + .|.|++..| ...+|++++|++|++.+.|..
T Consensus 141 ~~l~~va~ts~------~~~~~ls~lv~~Av~~v~~~---g-------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~ 203 (542)
T PRK00013 141 EEIAQVATISA------NGDEEIGKLIAEAMEKVGKE---G-------VITVEESKG-FETELEVVEGMQFDRGYLSPYF 203 (542)
T ss_pred HHHHHHHHhcc------cchHHHHHHHHHHHHHhCcC---C-------cEEEEEcCC-CCceEEEEEeEEecCCcccccc
Confidence 44666666643 37899999999999998652 1 488988886 888999999999999999885
Q ss_pred ------CCccccCCcEEEEeeecccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcC----
Q 000298 350 ------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG---- 419 (1706)
Q Consensus 350 ------M~~~i~nPRILLL~~~LEy~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~g---- 419 (1706)
|++.++||+||++++.|. +. +.+..++++|.+.+++|||++++|++.|+++|..++
T Consensus 204 ~~~~~~~~~~~~n~~Ilv~d~~i~-------~~-------~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~ 269 (542)
T PRK00013 204 VTDPEKMEAELENPYILITDKKIS-------NI-------QDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGT 269 (542)
T ss_pred cccccCCeEEEecCEEEEEcCccC-------CH-------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCccc
Confidence 488999999999999642 22 224477899999999999999999999999999997
Q ss_pred --CeEEecCC-----hHHHHHHHHHhCCceec-----ccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEE
Q 000298 420 --MTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE 486 (1706)
Q Consensus 420 --Itvv~nVK-----~~~LeRIAR~TGA~Iv~-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffe 486 (1706)
|.+|++++ +.+|+|||++|||.+++ +++ ++...||+|+.|++.+ ++++||+
T Consensus 270 ~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~ 333 (542)
T PRK00013 270 LKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK----------------DNTTIVD 333 (542)
T ss_pred ceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec----------------CEEEEEe
Confidence 89999887 88999999999999999 788 8888899999999864 5789999
Q ss_pred cCCCCccccccCCcchhh--------hh-hHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEe
Q 000298 487 GCPTRLGCTVSLYPMIVL--------FI-VLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 557 (1706)
Q Consensus 487 Gc~~~~gcT~~~~~~~~~--------~~-~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l 557 (1706)
||..+..++.+..-+-.. .. .|-+...| -.-..+||+|||+|..++++++|.++||++++++++.+. ||
T Consensus 334 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~-l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~V 411 (542)
T PRK00013 334 GAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAK-LAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IV 411 (542)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-hcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cc
Confidence 997755322000000000 00 00000000 011134599999999999999999999999999999995 99
Q ss_pred eCCCeeecc
Q 000298 558 VDQRAMFST 566 (1706)
Q Consensus 558 ~g~Ga~~~~ 566 (1706)
+||||++..
T Consensus 412 pGGGa~e~~ 420 (542)
T PRK00013 412 PGGGVALLR 420 (542)
T ss_pred cCcHHHHHH
Confidence 999999875
No 39
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.89 E-value=3.3e-22 Score=250.99 Aligned_cols=236 Identities=15% Similarity=0.196 Sum_probs=187.7
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCC-ceeEEeEEEeecCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQ-SQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~d-S~vI~GvVf~Knvahk~ 349 (1706)
..|++.+.+++ .+.+.|++|+++|+..+.++ + ++.|+ .||...| +++++|++|++.+.|..
T Consensus 141 ~~l~~va~ts~------~~~~~l~~lv~~Av~~v~~~---g-------~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~ 202 (542)
T PRK12849 141 EEIAQVATISA------NGDEEIGELIAEAMEKVGKD---G-------VITVE--ESKTLETELEVTEGMQFDRGYLSPY 202 (542)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHHhccC---C-------cEeEE--eCCCcceeEEEEEeEEEecCcccCc
Confidence 34667776643 36799999999999998652 2 23343 6999886 89999999999999884
Q ss_pred -------CCccccCCcEEEEeeecccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHc----
Q 000298 350 -------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK---- 418 (1706)
Q Consensus 350 -------M~~~i~nPRILLL~~~LEy~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~---- 418 (1706)
|++.++||+||++++.|. +. +.+..++++|.+.+++||+++++|++.|+++|.++
T Consensus 203 ~~~~~~~~~~~~~n~~Ili~d~~i~-------~~-------~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~ 268 (542)
T PRK12849 203 FVTDPERMEAVLEDPLILLTDKKIS-------SL-------QDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRG 268 (542)
T ss_pred ccccccCceEEeeCcEEEeecCCcC-------CH-------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhc
Confidence 589999999999999542 22 22445789999999999999999999999999999
Q ss_pred --CCeEEecCC-----hHHHHHHHHHhCCceec-----ccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEE
Q 000298 419 --GMTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485 (1706)
Q Consensus 419 --gItvv~nVK-----~~~LeRIAR~TGA~Iv~-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ff 485 (1706)
||.+|++++ +.+|+|||++|||.+++ +++ ++..+||+|+.|++.+ +++++|
T Consensus 269 ~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i 332 (542)
T PRK12849 269 GLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK----------------DNTTIV 332 (542)
T ss_pred cccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee----------------eeEEEE
Confidence 999999888 45599999999999999 578 8888899999999764 468889
Q ss_pred EcCCCCccccccCCcchhhhhhHhhhhhhc-------------------cccccceEEEeCCCHHHHHHHHHHHHHHHHH
Q 000298 486 EGCPTRLGCTVSLYPMIVLFIVLFEWLRRH-------------------TSLLCNQVLLKGSNSDELKRIKSVVQCAVVM 546 (1706)
Q Consensus 486 eGc~~~~gcT~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~tILLRG~t~~~L~evKrvl~~av~v 546 (1706)
+||..+..+. .-+ .++++. -....+||+|||+|..+|++++|.++||+++
T Consensus 333 ~g~~~~~~i~--------~r~---~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~ 401 (542)
T PRK12849 333 DGAGDKEAIE--------ARV---AQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNA 401 (542)
T ss_pred eCCCCHHHHH--------HHH---HHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 9998764221 000 000000 0112344999999999999999999999999
Q ss_pred HHHhhhcCeEeeCCCeeecc
Q 000298 547 AYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 547 ~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
+++++.+. ||+||||++..
T Consensus 402 ~~~a~~~g-~VpGGGa~e~~ 420 (542)
T PRK12849 402 TRAAVEEG-IVPGGGVALLR 420 (542)
T ss_pred HHHHHHcC-eecCCCHHHHH
Confidence 99999995 99999999875
No 40
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.89 E-value=2.2e-22 Score=251.82 Aligned_cols=240 Identities=16% Similarity=0.202 Sum_probs=188.8
Q ss_pred HHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCC-ceeEEeEEEeecCCCC
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQ-SQIIKGLVFKKHAAHK 348 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~d-S~vI~GvVf~Knvahk 348 (1706)
..+|++.+.+++++ .+.+++++++|+..+.++ + .|.| .+||+..| +++++|++|.+.+.|.
T Consensus 138 ~~~l~~va~ts~~~------~~~l~~lv~~A~~~v~~~---~-------~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~ 199 (520)
T cd03344 138 KEEIAQVATISANG------DEEIGELIAEAMEKVGKD---G-------VITV--EEGKTLETELEVVEGMQFDRGYLSP 199 (520)
T ss_pred HHHHHHHHHHhcCC------hHHHHHHHHHHHHHhccC---C-------cEEE--EeCCCcceeEEEEeeEEecCCCCCC
Confidence 34577888886653 688999999999988642 1 3444 58999999 7999999999999887
Q ss_pred CC-------CccccCCcEEEEeeecccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCC-
Q 000298 349 HM-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM- 420 (1706)
Q Consensus 349 ~M-------~~~i~nPRILLL~~~LEy~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gI- 420 (1706)
.| +..++||+||+++++|... +.+..++++|.+.+++|||++++|++.|+++|.++||
T Consensus 200 ~~~~~~~~~~~~~~n~~Ili~d~~l~~~--------------~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~ 265 (520)
T cd03344 200 YFVTDPEKMEVELENPYILLTDKKISSI--------------QELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLR 265 (520)
T ss_pred ccccCcccCeEEeeCCEEEEECCCCCCH--------------HHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCc
Confidence 65 4689999999999996322 1244578999999999999999999999999999999
Q ss_pred -----eEEecC-----ChHHHHHHHHHhCCceec-----ccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEE
Q 000298 421 -----TLVFDM-----KLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMF 484 (1706)
Q Consensus 421 -----tvv~nV-----K~~~LeRIAR~TGA~Iv~-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~f 484 (1706)
.+|+.+ ++++|+|||++|||.+++ +++ +....||+|+.|++.+ ++++|
T Consensus 266 ~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~ 329 (520)
T cd03344 266 GGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK----------------DDTTI 329 (520)
T ss_pred cCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee----------------ceEEE
Confidence 787755 899999999999999999 777 7878899999999865 46889
Q ss_pred EEcCCCCccccccCCcchhhhhhHhhhh-hhc---------------cccccceEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 000298 485 IEGCPTRLGCTVSLYPMIVLFIVLFEWL-RRH---------------TSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAY 548 (1706)
Q Consensus 485 feGc~~~~gcT~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y 548 (1706)
|+||..+..-. .-+.+.+-. ++- -....+||+|||+|..++++++|.++||+++++
T Consensus 330 i~~~~~~~~i~--------~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k 401 (520)
T cd03344 330 IGGAGDKAAIK--------ARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATR 401 (520)
T ss_pred EeCCCCHHHHH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHH
Confidence 99997642000 000000000 000 001223399999999999999999999999999
Q ss_pred HhhhcCeEeeCCCeeecc
Q 000298 549 HLILETSFLVDQRAMFST 566 (1706)
Q Consensus 549 ~l~lE~s~l~g~Ga~~~~ 566 (1706)
+++.+. ||+|||+++..
T Consensus 402 ~a~~~g-~VpGGGa~e~~ 418 (520)
T cd03344 402 AAVEEG-IVPGGGVALLR 418 (520)
T ss_pred HHHhcC-CCcCCcHHHHH
Confidence 999995 99999999875
No 41
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.4e-22 Score=235.58 Aligned_cols=232 Identities=19% Similarity=0.203 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCCCCccccCCcEEEEeeeccc
Q 000298 289 WVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRLLLIRGVLGL 368 (1706)
Q Consensus 289 W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~M~~~i~nPRILLL~~~LEy 368 (1706)
-.+++++|+.+||..+.|.. .|+++ .|+|.||.||...+|+++.|+||+..+. +-+++-+..||++.+||++.
T Consensus 171 ~ed~l~~lVa~ac~si~p~~----~Fnvd-nIrVcKi~Gg~l~~S~Vv~GmVfkr~~e--G~v~~ak~arvAvf~cP~d~ 243 (537)
T KOG0362|consen 171 NEDFLTKLVAKACVSILPLM----SFNVD-NIRVCKILGGGLEDSCVVCGMVFKRDPE--GEVKSAKDARVAVFACPFDI 243 (537)
T ss_pred hHHHHHHHHHHHHHhhcccc----ccccc-ceEEEEEecCCcccceeeEEEEeccccC--CcccccccceeEEEecCCCc
Confidence 46899999999999999961 28885 9999999999999999999999998776 33477889999999999999
Q ss_pred Cccc------cc---chhh-HHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCChHHHHHHHHHh
Q 000298 369 SSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCT 438 (1706)
Q Consensus 369 ~r~~------ls---Sle~-i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK~~~LeRIAR~T 438 (1706)
.+++ +. .+.. -+.|+..++.+|..|...|++||++.+.|.+.+++||.+.+|+|++--++-+|.|++|..
T Consensus 244 ~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtv 323 (537)
T KOG0362|consen 244 AQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTV 323 (537)
T ss_pred ccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHc
Confidence 8877 33 3555 678889999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEE-EcCCCCccccccCCcchhhhhhHhhhhhhcc
Q 000298 439 GSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI-EGCPTRLGCTVSLYPMIVLFIVLFEWLRRHT 516 (1706)
Q Consensus 439 GA~Iv~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ff-eGc~~~~gcT~~~~~~~~~~~~~~~~~~~~~ 516 (1706)
||.+++.+- +..+.||+|+++.+++++. .+++.| .+|......|
T Consensus 324 GA~~l~rl~~P~~~~lG~~d~V~~~EiG~-------------~~v~vF~~e~~~~~~~T--------------------- 369 (537)
T KOG0362|consen 324 GATALPRLFPPAPEELGYCDSVSTQEIGD-------------TLVVVFRWESTGTRVAT--------------------- 369 (537)
T ss_pred CCccchhccCCCCccccccceeeeeecCC-------------ceEEEEeeccCCCceeE---------------------
Confidence 999999999 8899999999999998743 345444 4565566667
Q ss_pred ccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeeccC
Q 000298 517 SLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 567 (1706)
Q Consensus 517 ~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~~ 567 (1706)
|+|||++...|+.++|+++++|++.+.+....++++|.|+++..+
T Consensus 370 ------vVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieL 414 (537)
T KOG0362|consen 370 ------VVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIEL 414 (537)
T ss_pred ------EEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHH
Confidence 999999999999999999999999999999999999999999863
No 42
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.89 E-value=7.6e-22 Score=248.64 Aligned_cols=239 Identities=13% Similarity=0.169 Sum_probs=188.7
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCc-eeEEeEEEeecCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQS-QIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS-~vI~GvVf~Knvahk~ 349 (1706)
.+|++.+.+++. +.+.|++|+++|+..+.++ | .|.++.||+..|| ++++|++|.+...|..
T Consensus 153 ~~l~~va~ts~~------~~~~l~~li~eAv~~vg~~---g---------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~ 214 (555)
T PTZ00114 153 EDILNVATISAN------GDVEIGSLIADAMDKVGKD---G---------TITVEDGKTLEDELEVVEGMSFDRGYISPY 214 (555)
T ss_pred HHHHHHHHHHcC------ChHHHHHHHHHHHHHhCcC---C---------cEEEcCCCCccceEEEEEEEEEeccccccc
Confidence 457777777543 3568999999999998652 2 2788899999999 8999999999999876
Q ss_pred -------CCccccCCcEEEEeeecccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcC---
Q 000298 350 -------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG--- 419 (1706)
Q Consensus 350 -------M~~~i~nPRILLL~~~LEy~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~g--- 419 (1706)
|+..++||+||+++++|+.. +.+..++++|.+.+.+||+++++|++.|+++|..++
T Consensus 215 ~~~~~~~~~~~l~~~~Ili~d~~L~~~--------------~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g 280 (555)
T PTZ00114 215 FVTNEKTQKVELENPLILVTDKKISSI--------------QSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRG 280 (555)
T ss_pred cccccccCeEEecCCEEEEEcCCCCCH--------------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCC
Confidence 48899999999999998721 126677889999999999999999999999999986
Q ss_pred ---CeEEec-----CChHHHHHHHHHhCCceeccc------c-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEE
Q 000298 420 ---MTLVFD-----MKLHRLERVARCTGSPILSSG------S-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMF 484 (1706)
Q Consensus 420 ---Itvv~n-----VK~~~LeRIAR~TGA~Iv~Si------d-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~f 484 (1706)
|.+++. +++.+|+|||++|||.++++. + ++...||+|+.|++.+ ..+++
T Consensus 281 ~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~----------------~~~~~ 344 (555)
T PTZ00114 281 GLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK----------------DETVI 344 (555)
T ss_pred ceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe----------------ceEEE
Confidence 899976 788999999999999999998 5 6677899999999987 13556
Q ss_pred EEcCCCCccccccCCcchhhhhh-Hhhhhhhcc---------------ccccceEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 000298 485 IEGCPTRLGCTVSLYPMIVLFIV-LFEWLRRHT---------------SLLCNQVLLKGSNSDELKRIKSVVQCAVVMAY 548 (1706)
Q Consensus 485 feGc~~~~gcT~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~tILLRG~t~~~L~evKrvl~~av~v~y 548 (1706)
|+||.....-. .-+. +-+..+... ....+||+|||+|+.+|++++|.++||+++++
T Consensus 345 ~~~~~~~~~i~--------~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k 416 (555)
T PTZ00114 345 LTGGGDKAEIK--------ERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATR 416 (555)
T ss_pred EeCCCcHHHHH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 67776220000 0000 000000000 12345599999999999999999999999999
Q ss_pred HhhhcCeEeeCCCeeecc
Q 000298 549 HLILETSFLVDQRAMFST 566 (1706)
Q Consensus 549 ~l~lE~s~l~g~Ga~~~~ 566 (1706)
+++.+. ||+|||+++..
T Consensus 417 ~a~~~g-vVpGGGa~e~~ 433 (555)
T PTZ00114 417 AAVEEG-IVPGGGVALLR 433 (555)
T ss_pred HHHhcC-cccCCcHHHHH
Confidence 999866 99999999875
No 43
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.88 E-value=7.1e-22 Score=248.09 Aligned_cols=245 Identities=15% Similarity=0.180 Sum_probs=190.5
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCC-
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH- 349 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~- 349 (1706)
..|++.+.+++ .+.+.|++|+++|+..+.++ | .|.|++.. |...++++++|++|.+...|..
T Consensus 142 ~~l~~va~~s~------~~~~~l~~lv~~Av~~vg~~---g-------~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~ 204 (541)
T PRK12851 142 AEIAQVATISA------NGDAEIGRLVAEAMEKVGNE---G-------VITVEESK-TAETELEVVEGMQFDRGYLSPYF 204 (541)
T ss_pred HHHHHHHHHhc------cChHHHHHHHHHHHHHhccc---C-------ceEEEEcc-CCCcceEEEEEEEecCCcccccc
Confidence 34555555533 47899999999999998642 1 45677666 6788999999999999999984
Q ss_pred ------CCccccCCcEEEEeeecccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCC---
Q 000298 350 ------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM--- 420 (1706)
Q Consensus 350 ------M~~~i~nPRILLL~~~LEy~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gI--- 420 (1706)
|+++++||+||+++++|+ ++ +.+..++++|.+.+++||+++++|++.|+++|..+||
T Consensus 205 ~~~~~~~~~~~~~~~Ilv~d~~i~-------~~-------~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~ 270 (541)
T PRK12851 205 VTDADKMEAELEDPYILIHEKKIS-------NL-------QDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGG 270 (541)
T ss_pred ccCCCCCeEEecccEEEEEcCCcC-------cH-------HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCc
Confidence 999999999999999853 22 1266789999999999999999999999999999997
Q ss_pred ---eEEec-----CChHHHHHHHHHhCCceec-----ccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEE
Q 000298 421 ---TLVFD-----MKLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE 486 (1706)
Q Consensus 421 ---tvv~n-----VK~~~LeRIAR~TGA~Iv~-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffe 486 (1706)
.+|+. +++.+|+|||++|||.+++ +++ ++...||+|+.|++++ ++++||+
T Consensus 271 ~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~ 334 (541)
T PRK12851 271 LKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK----------------ENTTIID 334 (541)
T ss_pred eeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc----------------ceEEEEc
Confidence 77775 9999999999999999999 677 7778899999998876 4688999
Q ss_pred cCCCCcccccc-----------CCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCe
Q 000298 487 GCPTRLGCTVS-----------LYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETS 555 (1706)
Q Consensus 487 Gc~~~~gcT~~-----------~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s 555 (1706)
||..+.....+ .-+.... .+-+.+.| -.-..+||+|||+|..+++++||.++||++++++++.+.
T Consensus 335 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~--~l~~ri~~-l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g- 410 (541)
T PRK12851 335 GAGSKTEIEGRVAQIRAQIEETTSDYDRE--KLQERLAK-LAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG- 410 (541)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHH-hcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 98765311100 0000000 00000000 001244599999999999999999999999999999995
Q ss_pred EeeCCCeeecc
Q 000298 556 FLVDQRAMFST 566 (1706)
Q Consensus 556 ~l~g~Ga~~~~ 566 (1706)
||+||||++..
T Consensus 411 ~VpGGGa~e~~ 421 (541)
T PRK12851 411 IVPGGGVALLR 421 (541)
T ss_pred cccCchHHHHH
Confidence 99999999875
No 44
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.88 E-value=1.1e-21 Score=246.00 Aligned_cols=246 Identities=15% Similarity=0.187 Sum_probs=188.8
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCC-CCceeEEeEEEeecCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR-NQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~-~dS~vI~GvVf~Knvahk~ 349 (1706)
.+|++.+.++. .+.+.|++++++|+..+.++ + .|.|+. ||.. .+|++++|++|++.+.|..
T Consensus 140 ~~l~~va~ts~------~~~~~l~~lv~~A~~~v~~~---~-------~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~ 201 (524)
T TIGR02348 140 KEIAQVATISA------NNDEEIGSLIAEAMEKVGKD---G-------VITVEE--SKSLETELEVVEGMQFDRGYISPY 201 (524)
T ss_pred HHHHHHHHHhc------cChHHHHHHHHHHHHHhCcC---C-------cEeeec--CCCccccEEEEEeEEEcCCCCCcc
Confidence 45677777643 35788999999999998653 2 233443 6666 6799999999999999886
Q ss_pred C-------CccccCCcEEEEeeecccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHc----
Q 000298 350 M-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK---- 418 (1706)
Q Consensus 350 M-------~~~i~nPRILLL~~~LEy~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~---- 418 (1706)
| ++.++||+||++++.|+- . +.+..++++|.+.+++|||++++|++.|+++|..+
T Consensus 202 ~~~~~~~~~~~~~n~~Ili~d~~i~~-------~-------~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~ 267 (524)
T TIGR02348 202 FVTDAEKMEVELENPYILITDKKISN-------I-------KDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRG 267 (524)
T ss_pred cccCccCCeEEeeCceeeeccCCcCC-------H-------HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhccc
Confidence 5 888999999999996431 1 22577899999999999999999999999999986
Q ss_pred --CCeEEecCCh-----HHHHHHHHHhCCceec-----ccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEE
Q 000298 419 --GMTLVFDMKL-----HRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485 (1706)
Q Consensus 419 --gItvv~nVK~-----~~LeRIAR~TGA~Iv~-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ff 485 (1706)
||.+|++++. .+|+|||++|||.+++ +++ ++...||+|+.|++.+ +++++|
T Consensus 268 ~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i 331 (524)
T TIGR02348 268 TLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK----------------DNTTIV 331 (524)
T ss_pred ccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee----------------cEEEEE
Confidence 8999988754 7999999999999999 888 8888999999999865 478999
Q ss_pred EcCCCCccccccCCcchhh------hh---hHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeE
Q 000298 486 EGCPTRLGCTVSLYPMIVL------FI---VLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSF 556 (1706)
Q Consensus 486 eGc~~~~gcT~~~~~~~~~------~~---~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~ 556 (1706)
+||..+..++.+..-+-.. .. .|-+...| -....+||+|||+|..++++++|.++||++++++++.+. |
T Consensus 332 ~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~-l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~ 409 (524)
T TIGR02348 332 EGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAK-LAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-I 409 (524)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 9987654322000000000 00 00000000 011245699999999999999999999999999999996 9
Q ss_pred eeCCCeeecc
Q 000298 557 LVDQRAMFST 566 (1706)
Q Consensus 557 l~g~Ga~~~~ 566 (1706)
|+|||+++..
T Consensus 410 VpGGGa~e~~ 419 (524)
T TIGR02348 410 VPGGGVALLR 419 (524)
T ss_pred ccCCcHHHHH
Confidence 9999999875
No 45
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.88 E-value=1.7e-21 Score=244.90 Aligned_cols=245 Identities=14% Similarity=0.201 Sum_probs=189.7
Q ss_pred HHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCC
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~ 349 (1706)
..+|++.+.+++.+ .+.|++|+++|+..+.++ | .+|++ . .+..| .++++++|++|++.+.|..
T Consensus 141 ~~~l~~va~~s~~~------~~~l~~lv~eAv~~vg~~---g-~i~v~-~---~~~~g---~~~~~v~G~~~~~g~~~p~ 203 (544)
T PRK12850 141 SKEIAQVATISANG------DESIGEMIAEAMDKVGKE---G-VITVE-E---AKTLG---TELDVVEGMQFDRGYLSPY 203 (544)
T ss_pred HHHHHHHHHHhcCC------HHHHHHHHHHHHHHhccc---C-ceeeE-E---ccccC---cceEEEEeEEecCccCcCc
Confidence 34577777776443 588999999999998652 2 34443 2 22344 6899999999999999976
Q ss_pred C-------CccccCCcEEEEeeecccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCC--
Q 000298 350 M-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM-- 420 (1706)
Q Consensus 350 M-------~~~i~nPRILLL~~~LEy~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gI-- 420 (1706)
| ++.++||+||++++.|. ++ +.+..++++|++.+.+||+++++|++.|+++|.++||
T Consensus 204 ~~~~~~~~~~~~~n~~Ill~d~~i~-------~~-------~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~ 269 (544)
T PRK12850 204 FVTNPEKMRAELEDPYILLHEKKIS-------NL-------QDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRG 269 (544)
T ss_pred cccccccCeEEEeCCEEEEEecccC-------CH-------HHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcc
Confidence 4 88999999999999642 21 2377889999999999999999999999999999999
Q ss_pred ----eEEec-----CChHHHHHHHHHhCCceec-----ccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEE
Q 000298 421 ----TLVFD-----MKLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485 (1706)
Q Consensus 421 ----tvv~n-----VK~~~LeRIAR~TGA~Iv~-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ff 485 (1706)
.+|+. +++.+|+|||++|||.+++ +++ ++...||+|+.|++.+ ++++||
T Consensus 270 ~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i 333 (544)
T PRK12850 270 GLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK----------------ENTTII 333 (544)
T ss_pred cceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe----------------eeEEEE
Confidence 88887 9999999999999999999 677 7878899999998775 468899
Q ss_pred EcCCCCccccccCCcchhhhhh------------HhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhc
Q 000298 486 EGCPTRLGCTVSLYPMIVLFIV------------LFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILE 553 (1706)
Q Consensus 486 eGc~~~~gcT~~~~~~~~~~~~------------~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE 553 (1706)
+||..+..++.+ +..+--- |-+... .-....+||+|||+|..++++++|.++||++++++++.+
T Consensus 334 ~g~~~~~~i~~r---i~~l~~~~~~~~~~~~~~~l~eR~~-~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~ 409 (544)
T PRK12850 334 DGAGDKKNIEAR---VKQIRAQIEETTSDYDREKLQERLA-KLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEE 409 (544)
T ss_pred eCCCCHHHHHHH---HHHHHHHHHhcccHHHHHHHHHHHH-HhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999876533300 0000000 000000 001234569999999999999999999999999999999
Q ss_pred CeEeeCCCeeecc
Q 000298 554 TSFLVDQRAMFST 566 (1706)
Q Consensus 554 ~s~l~g~Ga~~~~ 566 (1706)
.||+||||++..
T Consensus 410 -g~VpGGGa~e~~ 421 (544)
T PRK12850 410 -GIVPGGGVALLR 421 (544)
T ss_pred -CCccCCcHHHHH
Confidence 599999999875
No 46
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.86 E-value=1.4e-20 Score=236.91 Aligned_cols=239 Identities=15% Similarity=0.192 Sum_probs=186.1
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCC-CCceeEEeEEEeecCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR-NQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~-~dS~vI~GvVf~Knvahk~ 349 (1706)
.+|++.+.+++.+ .+.|++|+++|+..|.++ + .|.|. .||.. .++++++|++|++...+..
T Consensus 142 ~~l~~va~~s~~~------~~~l~~li~eA~~~vg~~---g-------~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~ 203 (545)
T PRK12852 142 AEIAQVGTISANG------DAAIGKMIAQAMQKVGNE---G-------VITVE--ENKSLETEVDIVEGMKFDRGYLSPY 203 (545)
T ss_pred HHHHHHHhhhcCC------hHHHHHHHHHHHHHhccC---C-------ceeee--cCCCcceEEEEEEeEEecCCccCCc
Confidence 4566777765533 478999999999999753 2 23344 27775 7999999999999999874
Q ss_pred -------CCccccCCcEEEEeeecccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHc----
Q 000298 350 -------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK---- 418 (1706)
Q Consensus 350 -------M~~~i~nPRILLL~~~LEy~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~---- 418 (1706)
|+..++||+|||+++.|. +. +++..+++.|.+.+++|||+.++|++.|+++|..+
T Consensus 204 ~v~~~~~~~~~l~n~~Ili~d~~i~-------~~-------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~ 269 (545)
T PRK12852 204 FVTNAEKMTVELDDAYILLHEKKLS-------GL-------QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRG 269 (545)
T ss_pred cccccccceEEecCceEEEecCccC-------CH-------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccc
Confidence 999999999999977542 11 36777899999999999999999999999999875
Q ss_pred --CCeEEecCC-----hHHHHHHHHHhCCceec-----ccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEE
Q 000298 419 --GMTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485 (1706)
Q Consensus 419 --gItvv~nVK-----~~~LeRIAR~TGA~Iv~-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ff 485 (1706)
+|.+|+..+ +.+|+|||++|||.+++ +++ ++...||+|+.|++.+ +.+++|
T Consensus 270 ~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~----------------~~~~~i 333 (545)
T PRK12852 270 GLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK----------------ENTTIV 333 (545)
T ss_pred cceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc----------------cEEEEE
Confidence 799999665 99999999999999999 677 8888899999998876 357888
Q ss_pred EcCCCCccccccCCcchhhhh-hHhhhhhhcc---------------ccccceEEEeCCCHHHHHHHHHHHHHHHHHHHH
Q 000298 486 EGCPTRLGCTVSLYPMIVLFI-VLFEWLRRHT---------------SLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYH 549 (1706)
Q Consensus 486 eGc~~~~gcT~~~~~~~~~~~-~~~~~~~~~~---------------~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~ 549 (1706)
+||..+..-. .-+ .+-+..++.. ....+||+|||+|+.+++++||.++||++++++
T Consensus 334 ~~~~~~~~i~--------~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~ 405 (545)
T PRK12852 334 NGAGKKADIE--------ARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRA 405 (545)
T ss_pred eCCCCHHHHH--------HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9886530000 000 0000000000 012345999999999999999999999999999
Q ss_pred hhhcCeEeeCCCeeecc
Q 000298 550 LILETSFLVDQRAMFST 566 (1706)
Q Consensus 550 l~lE~s~l~g~Ga~~~~ 566 (1706)
++.+. ||+|||+++..
T Consensus 406 a~~~g-~VpGGGa~e~~ 421 (545)
T PRK12852 406 AVQEG-IVPGGGVALLR 421 (545)
T ss_pred HHhcC-CCcCchHHHHH
Confidence 99995 99999999875
No 47
>CHL00093 groEL chaperonin GroEL
Probab=99.84 E-value=4.3e-20 Score=231.83 Aligned_cols=248 Identities=15% Similarity=0.169 Sum_probs=183.2
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceeEEeEEEeecCCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS~vI~GvVf~Knvahk~M 350 (1706)
..|++.+.+++ .+.+.|++|+++|+..|.++ | .+|+ + -.+|...++++++|++|++...|..|
T Consensus 141 ~~L~~VA~ts~------~~~~~l~~lv~eAv~~vg~~---g-~i~~------~-~g~~~~~~~~~v~G~~~~~g~~~p~f 203 (529)
T CHL00093 141 QAITQVASISA------GNDEEVGSMIADAIEKVGRE---G-VISL------E-EGKSTVTELEITEGMRFEKGFISPYF 203 (529)
T ss_pred HHHHHHHHHhc------cChHHHHHHHHHHHHHhccC---C-ceee------c-CCCccceeeEEEeeEEecCccCcCcc
Confidence 44666677643 37888999999999999652 2 2333 2 12345677899999999999998754
Q ss_pred ---Cc----cccCCcEEEEeeecccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHH--HH----
Q 000298 351 ---PT----EYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESI--LE---- 417 (1706)
Q Consensus 351 ---~~----~i~nPRILLL~~~LEy~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L--~~---- 417 (1706)
++ .++||+||+++++|++.+ ..+..++++|...+.++|+++++|++.|+..| .+
T Consensus 204 v~~~k~~~~~l~n~~Ili~d~~le~~~-------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~ 270 (529)
T CHL00093 204 VTDTERMEVVQENPYILLTDKKITLVQ-------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGI 270 (529)
T ss_pred ccCCccceEEecCceehhhcCCCCchH-------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhccc
Confidence 43 599999999999999762 34778889999999999999999999666655 66
Q ss_pred cCCeEEecC-----ChHHHHHHHHHhCCceec-----ccc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEE
Q 000298 418 KGMTLVFDM-----KLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE 486 (1706)
Q Consensus 418 ~gItvv~nV-----K~~~LeRIAR~TGA~Iv~-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffe 486 (1706)
+||.+|+++ ++.+|+|||++|||.+++ +++ ++...||+|+.+++.+ +++++|+
T Consensus 271 ~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~~~ 334 (529)
T CHL00093 271 VNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK----------------DSTTIIA 334 (529)
T ss_pred ceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec----------------CEEEEEe
Confidence 499999998 448899999999999999 688 8888899999999874 3577777
Q ss_pred cCCCCc---cccccC--Ccchhhhh---hHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEee
Q 000298 487 GCPTRL---GCTVSL--YPMIVLFI---VLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLV 558 (1706)
Q Consensus 487 Gc~~~~---gcT~~~--~~~~~~~~---~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~ 558 (1706)
+++... .|...- .-...+.. -|.+-+.+. .-.++||+|||+|+.++++.||.++||++++++++.+. +|+
T Consensus 335 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l-~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVp 412 (529)
T CHL00093 335 DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKL-SGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVP 412 (529)
T ss_pred cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHh-cCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-ccc
Confidence 544321 111000 00000000 000000000 11355699999999999999999999999999999995 999
Q ss_pred CCCeeecc
Q 000298 559 DQRAMFST 566 (1706)
Q Consensus 559 g~Ga~~~~ 566 (1706)
|||+++..
T Consensus 413 GGGa~e~~ 420 (529)
T CHL00093 413 GGGATLVH 420 (529)
T ss_pred CCcHHHHH
Confidence 99999875
No 48
>PRK14104 chaperonin GroEL; Provisional
Probab=99.83 E-value=2.1e-19 Score=226.12 Aligned_cols=220 Identities=16% Similarity=0.199 Sum_probs=182.4
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCC-CCceeEEeEEEeecCCCCC
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR-NQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~-~dS~vI~GvVf~Knvahk~ 349 (1706)
.+|++.+.++..++ +.|++|+++|+..|.++ | .|.|..+ +.. .++++++|++|++.+.|..
T Consensus 142 ~~l~~va~~s~~~d------~~i~~lv~~Av~~vg~~---g-------~i~v~~~--~~~~~~~~~~~G~~~~~g~~~p~ 203 (546)
T PRK14104 142 DEIAQVGTISANGD------AEIGKFLADAMKKVGNE---G-------VITVEEA--KSLETELDVVEGMQFDRGYISPY 203 (546)
T ss_pred HHHHHHHHHHhcCc------hHHHHHHHHHHHHhccC---C-------ceeeEec--ccccceEEEEEEEEEeCCCCCcc
Confidence 45677777755443 66999999999988642 2 3455543 445 5899999999999999885
Q ss_pred C-------CccccCCcEEEEeeecccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHH-----
Q 000298 350 M-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILE----- 417 (1706)
Q Consensus 350 M-------~~~i~nPRILLL~~~LEy~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~----- 417 (1706)
| +..++||+||+.+.. +.++ +.+..+++.|...+.+||+++++|++.|+++|..
T Consensus 204 ~~~~~~~~~~~~~~~~Ilv~d~~-------i~~~-------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~ 269 (546)
T PRK14104 204 FVTNADKMRVEMDDAYILINEKK-------LSSL-------NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRG 269 (546)
T ss_pred hhcCcccCceeeeCcEEEEehhh-------hcCH-------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccc
Confidence 5 778999999999722 3333 2366889999999999999999999999999984
Q ss_pred -cCCeEEecCC-----hHHHHHHHHHhCCceecc-----cc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEE
Q 000298 418 -KGMTLVFDMK-----LHRLERVARCTGSPILSS-----GS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485 (1706)
Q Consensus 418 -~gItvv~nVK-----~~~LeRIAR~TGA~Iv~S-----id-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ff 485 (1706)
.||.+|++++ +.+|+|||++|||.++++ ++ ++...||+|+.+++.. +.+++|
T Consensus 270 ~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~----------------~~~~~i 333 (546)
T PRK14104 270 GLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDK----------------ENTTIV 333 (546)
T ss_pred eeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcC----------------CEEEEE
Confidence 6799998777 899999999999999999 77 8888899999988521 567889
Q ss_pred EcCCCC-----------------------------------ccccccCCcchhhhhhHhhhhhhccccccceEEEeCCCH
Q 000298 486 EGCPTR-----------------------------------LGCTVSLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNS 530 (1706)
Q Consensus 486 eGc~~~-----------------------------------~gcT~~~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~ 530 (1706)
+||..+ ..|| |+|||+|+
T Consensus 334 ~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~at---------------------------I~irG~t~ 386 (546)
T PRK14104 334 NGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAV---------------------------IRVGGATE 386 (546)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEE---------------------------EEecCCCH
Confidence 999764 4455 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 531 DELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 531 ~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
.+++++||.++||++++++++.+. ||+|||+++..
T Consensus 387 ~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~ 421 (546)
T PRK14104 387 VEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLR 421 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHH
Confidence 999999999999999999999996 99999999875
No 49
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.82 E-value=4e-20 Score=233.96 Aligned_cols=246 Identities=17% Similarity=0.162 Sum_probs=185.4
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCc-eeEEeEEEeecCCCC-
Q 000298 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQS-QIIKGLVFKKHAAHK- 348 (1706)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~W~d~ls~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~dS-~vI~GvVf~Knvahk- 348 (1706)
.+|++.+.++++ +.+.|++|+++|+..|.++ | .+++ -.||+..|+ ++++|++|++...|.
T Consensus 196 ~~L~~vA~tS~~------~~~~i~~liaeAv~~Vg~~---g-~i~v--------~~g~s~~dsl~~v~G~~~d~g~~spy 257 (600)
T PLN03167 196 SELADVAAVSAG------NNYEVGNMIAEAMSKVGRK---G-VVTL--------EEGKSAENNLYVVEGMQFDRGYISPY 257 (600)
T ss_pred HHHHHHHHHhcc------CcHHHHHHHHHHHHHhccC---C-cEEe--------ccCCCccceeEEEEEEEecCCccCcc
Confidence 457777777554 3458999999999999652 2 2222 269999998 999999999999988
Q ss_pred ------CCCccccCCcEEEEeeecccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHH------
Q 000298 349 ------HMPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESIL------ 416 (1706)
Q Consensus 349 ------~M~~~i~nPRILLL~~~LEy~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~------ 416 (1706)
+|+..++||+|||+++.|. +.+ .+..++++|...++++|++.++|++.|+++|.
T Consensus 258 fvt~~~~m~~~l~np~Ill~d~~i~-------~~~-------~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g 323 (600)
T PLN03167 258 FVTDSEKMSVEYDNCKLLLVDKKIT-------NAR-------DLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRG 323 (600)
T ss_pred cccCcCCCeEEEeCCEEEEEccccC-------CHH-------HHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccc
Confidence 8999999999999987532 221 22234567888999999999999999999999
Q ss_pred HcCCeEEecCC-----hHHHHHHHHHhCCceec-----ccc-CCCCCceeeeeEEEEE-----eecccccccCCC-CCCC
Q 000298 417 EKGMTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKK-----FVEEHAGFREGG-KRPS 479 (1706)
Q Consensus 417 ~~gItvv~nVK-----~~~LeRIAR~TGA~Iv~-----Sid-L~~~~LG~C~~f~v~~-----~~~~~~~~~~g~-~~~~ 479 (1706)
..+|.+|+.++ ++.|+|||.+|||.+++ +++ ++...||+|+.|++++ ++.+ |. ....
T Consensus 324 ~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~------~~~~~i~ 397 (600)
T PLN03167 324 SLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDG------STQEAVN 397 (600)
T ss_pred cceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCC------ccHHHHH
Confidence 88899999985 88999999999999999 677 8888899999999987 3221 00 0112
Q ss_pred ceEEEEEcCCCCccccccCCcchhhhhhHhhhh-hhc-cccccceEE-EeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeE
Q 000298 480 KTLMFIEGCPTRLGCTVSLYPMIVLFIVLFEWL-RRH-TSLLCNQVL-LKGSNSDELKRIKSVVQCAVVMAYHLILETSF 556 (1706)
Q Consensus 480 Ktl~ffeGc~~~~gcT~~~~~~~~~~~~~~~~~-~~~-~~~~~~tIL-LRG~t~~~L~evKrvl~~av~v~y~l~lE~s~ 556 (1706)
+.+.+|++|....... .. .+-+ .|. ....+.+|| |||+|..+|+|+||.++||++++++++.+. +
T Consensus 398 ~r~~~i~~~~~~~~~~----------~~-~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-v 465 (600)
T PLN03167 398 KRVAQIKNLIEAAEQD----------YE-KEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-I 465 (600)
T ss_pred HHHHHHHhhhhccCCH----------HH-HHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 5677888775211100 00 0000 000 001122355 999999999999999999999999999999 9
Q ss_pred eeCCCeeecc
Q 000298 557 LVDQRAMFST 566 (1706)
Q Consensus 557 l~g~Ga~~~~ 566 (1706)
|+|||+++..
T Consensus 466 VpGGGa~el~ 475 (600)
T PLN03167 466 VVGGGCTLLR 475 (600)
T ss_pred CccHHHHHHH
Confidence 9999999875
No 50
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.3e-18 Score=197.52 Aligned_cols=143 Identities=18% Similarity=0.240 Sum_probs=137.6
Q ss_pred HHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCChHHHHHHHHHhCCceecccc-CCCCCceeeeeEEEEEe
Q 000298 386 LKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKF 464 (1706)
Q Consensus 386 L~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK~~~LeRIAR~TGA~Iv~Sid-L~~~~LG~C~~f~v~~~ 464 (1706)
+..+++.|...|+++++||++.++.|.++|.+.+..+|++|..++||-||-+||++|++.+. |++.+||+|+.++...|
T Consensus 144 f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sf 223 (400)
T KOG0357|consen 144 FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISF 223 (400)
T ss_pred HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEec
Confidence 78889999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ecccccccCCCCCCCceEEEEEcCCCCccccccCCcchhhhhhHhhhhhhccccccceEEEeCCCHHHHHHHHHHHHHHH
Q 000298 465 VEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAV 544 (1706)
Q Consensus 465 ~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT~~~~~~~~~~~~~~~~~~~~~~~~~~tILLRG~t~~~L~evKrvl~~av 544 (1706)
+.. ..+++++|.|++.+..| |.+||+|.-+.+|+||++|||+
T Consensus 224 gtt-----------kdkmlviEqc~nskaVT---------------------------ifvRg~Nkmii~Eakrslhdal 265 (400)
T KOG0357|consen 224 GTT-----------KDKMLVIEQCKNSKAVT---------------------------IFVRGGNKMIIEEAKRSLHDAL 265 (400)
T ss_pred ccc-----------cceEEEEEecCCCceEE---------------------------EEEecCcceeHHHHHHHhhhhH
Confidence 652 46899999999999999 9999999999999999999999
Q ss_pred HHHHHhhhcCeEeeCCCeeecc
Q 000298 545 VMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 545 ~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
|+++|++.+.++++|||+.+..
T Consensus 266 Cvirnlird~rivYgGGaaEis 287 (400)
T KOG0357|consen 266 CVIRNLIRDNRVVYGGGAAEIS 287 (400)
T ss_pred HHHHHHhhcCeeEecCchHHhh
Confidence 9999999999999999998764
No 51
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=95.50 E-value=0.012 Score=79.80 Aligned_cols=100 Identities=9% Similarity=-0.229 Sum_probs=81.1
Q ss_pred CCCCCCCChhcccceeeecCcEEEEEEEecCccccCCCCCCCcEEEeecCCCCCCCCCCCCCCceEEccccccccchHHH
Q 000298 808 QCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAACGLSFGKF 887 (1706)
Q Consensus 808 ~C~sC~~pm~~H~rsYvH~~g~ltI~Ve~l~~~~~lpge~~g~I~MWs~Ck~C~~~~g~~~sTp~v~MSd~tW~~SFGKF 887 (1706)
.|..|+.+|..|++.|+|.+- ...-+...+. ++|+ ..+|.||++|..|+. .+-+ +|...+|++.+|++
T Consensus 658 ~~~~~~~~~~~~lv~~~es~~--~~~~~s~~~~--~~~l-~e~~~~~~~~~~~k~------~~~~-~~~~~~~~~~~~~~ 725 (1598)
T KOG0230|consen 658 LSSYSKGPKQNGLVPAHESVL--NDLHESTLSI--LSKL-PETRSGTHEGNEDKG------PGLE-PELANNQNIQRPEE 725 (1598)
T ss_pred hhhhcCchhhccccccccccc--cccccccccc--cccc-cchhcccchhccccC------cccc-ccccccccccchhh
Confidence 345689999999999999988 3333333333 5665 358999999999999 5888 99999999999999
Q ss_pred HHHhcCCCCCCCCCCCCCCCcccceeeecccCCeE
Q 000298 888 LELSFSHHSSSTRLSSCGHSLHRDFLYFFGLGPMV 922 (1706)
Q Consensus 888 LELsF~~~~~~~r~~~C~H~l~rDhlryFg~~~~V 922 (1706)
+|-+ +...+.+...|.|.+---|.|+| +.++|
T Consensus 726 ~e~~--~s~~~~~~~~HQsilVl~ss~~~-~k~~~ 757 (1598)
T KOG0230|consen 726 TEEQ--SSKDALDPSSHQSILVLFSSRSV-LKGSV 757 (1598)
T ss_pred hhhh--hcccCCCccccceeEEEEeeeee-ccCCc
Confidence 9999 44456677889999999999999 88886
No 52
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=87.57 E-value=1.7 Score=55.06 Aligned_cols=229 Identities=16% Similarity=0.192 Sum_probs=130.9
Q ss_pred HHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCC-ceeEEeEEEeecCCC-------CCCCccccCCcEEEEeeec
Q 000298 295 SLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQ-SQIIKGLVFKKHAAH-------KHMPTEYKNPRLLLIRGVL 366 (1706)
Q Consensus 295 ~L~~eA~~~V~p~~~~g~~mDi~~yVKIKkI~GGs~~d-S~vI~GvVf~Knvah-------k~M~~~i~nPRILLL~~~L 366 (1706)
.+.-+|+..|.++ ..|.|+ -|.+..| =+++.|+=|...... |.+...++||.+||..-.
T Consensus 173 ~li~~a~~kvG~~----------GVItv~--~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kk- 239 (550)
T KOG0356|consen 173 NLISDAMKKVGRK----------GVITVK--DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKK- 239 (550)
T ss_pred HHHHHHHHHhCcC----------CeEEee--cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhh-
Confidence 3666777777653 123333 2444433 457778888776554 334455677777665221
Q ss_pred ccCcccccchhhHHHHHHHHHHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcC----CeE--E-----ecCChHHHHHHH
Q 000298 367 GLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG----MTL--V-----FDMKLHRLERVA 435 (1706)
Q Consensus 367 Ey~r~~lsSle~i~qE~eyL~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~g----Itv--v-----~nVK~~~LeRIA 435 (1706)
+.+=++.+.-+-......+|=||+.| .|...|+..|.=.+ +-| + .+-+...|..||
T Consensus 240 ------------i~~v~~ivp~LE~A~~~~~PLliIAe-Di~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Dia 306 (550)
T KOG0356|consen 240 ------------ISSVQSIVPALELALAKRRPLLIIAE-DIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIA 306 (550)
T ss_pred ------------hhHHHHHhHHHHHhhhccCceEEEeh-hcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHH
Confidence 22222333333344455667666654 68888888776332 222 1 444677899999
Q ss_pred HHhCCceecc------cc-CCCCCceeeeeEEEEEeecccccccCCCCCCCceEEEEEcCC--CCcccc-ccCCcchhhh
Q 000298 436 RCTGSPILSS------GS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCP--TRLGCT-VSLYPMIVLF 505 (1706)
Q Consensus 436 R~TGA~Iv~S------id-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~--~~~gcT-~~~~~~~~~~ 505 (1706)
-+|||.++.. ++ ....+||+|..+.+-+ +.-+.+.|-. ..--++ -....|+-.+
T Consensus 307 i~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtk----------------d~t~ll~g~~~~~~v~~rIeqik~~~e~t 370 (550)
T KOG0356|consen 307 ILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTK----------------DDTMLLKGKGNKAQVEGRIEQIKEMIEET 370 (550)
T ss_pred HHhhhhhhccchhhcccccCchhhcCcceeEEEec----------------CcceeeCCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999998753 33 4567899999988765 1222332221 111111 0000000000
Q ss_pred hhHhh---hhhhccc--cccceEEEeCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCeeecc
Q 000298 506 IVLFE---WLRRHTS--LLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 566 (1706)
Q Consensus 506 ~~~~~---~~~~~~~--~~~~tILLRG~t~~~L~evKrvl~~av~v~y~l~lE~s~l~g~Ga~~~~ 566 (1706)
..-.+ ..+|.-. ...++|-+-|.++-++++-|-.+.||+.+.++.. |.-+++|||+.+-.
T Consensus 371 ~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aav-eeGivpGGG~all~ 435 (550)
T KOG0356|consen 371 TSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAV-EEGIVPGGGTALLR 435 (550)
T ss_pred hhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHh-hcCcccCCchHHHH
Confidence 00000 1111111 2335577789999999999999999999888876 67789999987753
No 53
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=57.26 E-value=26 Score=38.58 Aligned_cols=51 Identities=20% Similarity=0.434 Sum_probs=36.7
Q ss_pred HHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeE-EecCCh------HHHHHHHHHhCC
Q 000298 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTL-VFDMKL------HRLERVARCTGS 440 (1706)
Q Consensus 390 V~rI~~~~pnVVLVeksVs~~A~~~L~~~gItv-v~nVK~------~~LeRIAR~TGA 440 (1706)
+++|++++|||||....-.....+.|.+.||.+ +..... ..++.+++.+|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 478999999999987655555667799999954 444321 346677888775
No 54
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=51.73 E-value=26 Score=41.72 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=41.0
Q ss_pred HHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEec-CC-----hHHHHHHHHHhCCc
Q 000298 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFD-MK-----LHRLERVARCTGSP 441 (1706)
Q Consensus 390 V~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~n-VK-----~~~LeRIAR~TGA~ 441 (1706)
+++|++++||+||+....+....+.|.+.||.|+.- .. ...++.+++.+|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 578999999999998888888888899999987642 21 23478888888864
No 55
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=50.77 E-value=35 Score=39.14 Aligned_cols=52 Identities=13% Similarity=0.314 Sum_probs=39.0
Q ss_pred HHHHhcCCCcEEEEccCcCHHH-HHHHHHcCCeEEecCC------hHHHHHHHHHhCCc
Q 000298 390 MDMIDMCHPNVVLVEKTVSRDI-QESILEKGMTLVFDMK------LHRLERVARCTGSP 441 (1706)
Q Consensus 390 V~rI~~~~pnVVLVeksVs~~A-~~~L~~~gItvv~nVK------~~~LeRIAR~TGA~ 441 (1706)
+++|++++|||||+...-.... .+.|.+.||+++..-. ...++.|++.+|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 4789999999999976554544 7889999998765321 23478888888875
No 56
>PLN02667 inositol polyphosphate multikinase
Probab=49.32 E-value=28 Score=42.07 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=46.6
Q ss_pred ecCCcEEEeecC-----HHHHHHHHHHHHH--HHHHHhhhcCCCCCccceeeeEEEEEEeecCCCCcceeEEEEEEeecc
Q 000298 1465 TLDDRFIIKEIK-----KTEFDSFDKFALH--YFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLT 1537 (1706)
Q Consensus 1465 T~D~rFIIKtis-----~~E~~~fl~~lp~--Yf~yi~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf 1537 (1706)
+.|+..|+|-+. ..|+++...+..+ .-..+ .-++++++|...+... .|+ .+||||||.
T Consensus 23 ~~~~g~~~Kp~~~~~rg~rE~~FY~~~~~~~~~~~~L--------~~~~P~y~G~~~~~~~---~~~----~~i~LeDLt 87 (286)
T PLN02667 23 VDDSGRFYKPLQDDSRGEREAAFYESFSSDTRVPDHI--------RRFFPVFHGTQLVEAS---DGS----GLLVLEDLL 87 (286)
T ss_pred EcCCCcEEeccCCcccchHHHHHHHHHhccccchHHH--------HhhCcccceeEeeccC---CCc----eeEEehHHh
Confidence 347778899997 7888877665411 00111 3578999999887432 233 379999999
Q ss_pred CCCccceeeeccC
Q 000298 1538 FERNITRQYDLKG 1550 (1706)
Q Consensus 1538 ~~~~i~~~YDLKG 1550 (1706)
++..--.+=|||=
T Consensus 88 ~g~~~PcVlDlKm 100 (286)
T PLN02667 88 AGYTKPCVMDVKM 100 (286)
T ss_pred cCCCCCeEEEEEe
Confidence 8855444555553
No 57
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=48.38 E-value=35 Score=42.24 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=38.7
Q ss_pred HHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCC---h----HHHHHHHHHhCCc
Q 000298 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK---L----HRLERVARCTGSP 441 (1706)
Q Consensus 390 V~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK---~----~~LeRIAR~TGA~ 441 (1706)
+++|++++|||||+...-.....+.|.+.||.++.--. . ..++.|++.+|-.
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 68999999999999765556667889999999865422 1 3456777877763
No 58
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=47.11 E-value=54 Score=32.02 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=38.4
Q ss_pred HHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCChHHHHHHHHH
Q 000298 388 SVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARC 437 (1706)
Q Consensus 388 ~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK~~~LeRIAR~ 437 (1706)
.+.+.|...++++|+|.+ |...+...|.++||.++.....+.=+-|.+.
T Consensus 44 ~~~~~l~~~~v~~li~~~-iG~~~~~~L~~~gI~v~~~~~~~i~~~l~~~ 92 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICGG-IGEGAFRALKEAGIKVYQGAGGDIEEALEAY 92 (94)
T ss_dssp HHHHHHHHTTESEEEESC-SCHHHHHHHHHTTSEEEESTSSBHHHHHHHH
T ss_pred hHHHHHHHcCCCEEEEeC-CCHHHHHHHHHCCCEEEEcCCCCHHHHHHHH
Confidence 345667778999999855 8999999999999999998666655555443
No 59
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=40.85 E-value=50 Score=38.04 Aligned_cols=50 Identities=10% Similarity=0.203 Sum_probs=36.8
Q ss_pred HHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCC----hHHHHHHHHHhCC
Q 000298 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK----LHRLERVARCTGS 440 (1706)
Q Consensus 390 V~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK----~~~LeRIAR~TGA 440 (1706)
+++|++++||+||+...... ..+-|.+.|.+++.+.. ...+++|++.+|.
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~ 112 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNK 112 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCc
Confidence 47899999999999877655 66778888877765532 2456777777765
No 60
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=40.55 E-value=59 Score=32.28 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCC
Q 000298 387 KSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK 427 (1706)
Q Consensus 387 ~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK 427 (1706)
..+++.|...++++|+|. ++..-+.+.|.++||.++.-..
T Consensus 53 ~~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 53 GKAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred hHHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 456677777999999995 6999999999999999997776
No 61
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=37.15 E-value=75 Score=35.97 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=39.8
Q ss_pred HHHhcCCCcEEEEccCc-CHHHHHHHHHcCCeEEecCCh-------HHHHHHHHHhCCc
Q 000298 391 DMIDMCHPNVVLVEKTV-SRDIQESILEKGMTLVFDMKL-------HRLERVARCTGSP 441 (1706)
Q Consensus 391 ~rI~~~~pnVVLVeksV-s~~A~~~L~~~gItvv~nVK~-------~~LeRIAR~TGA~ 441 (1706)
++|++++||+||..... .......+.++||.++.--.. ..++.|++.+|..
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 78999999999999888 777777789999988764443 3578889998875
No 62
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=35.75 E-value=74 Score=35.02 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=34.9
Q ss_pred HHHHhcCCCcEEEEccCcCHH-HHHHHHHcCCeE-EecC----Ch--HHHHHHHHHhC
Q 000298 390 MDMIDMCHPNVVLVEKTVSRD-IQESILEKGMTL-VFDM----KL--HRLERVARCTG 439 (1706)
Q Consensus 390 V~rI~~~~pnVVLVeksVs~~-A~~~L~~~gItv-v~nV----K~--~~LeRIAR~TG 439 (1706)
+++|++++|||||....-... ..+.|.+.||.+ .... .. ..++.+++.+|
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHHHcC
Confidence 588999999999986655443 778899999855 3332 11 23666777766
No 63
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=34.46 E-value=84 Score=36.40 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=38.1
Q ss_pred HHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCC--hH----HHHHHHHHhCCc
Q 000298 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK--LH----RLERVARCTGSP 441 (1706)
Q Consensus 390 V~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK--~~----~LeRIAR~TGA~ 441 (1706)
+++|++++||+||+.........+.|.+.+.+++.... .. .++.+++.+|..
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~ 115 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKE 115 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcH
Confidence 47899999999999887776566667777767666653 33 467777777753
No 64
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=33.09 E-value=93 Score=30.77 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCC
Q 000298 388 SVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK 427 (1706)
Q Consensus 388 ~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK 427 (1706)
.....+...++++|+|.+ +..-+...|.++||.++.-..
T Consensus 52 ~~~~~l~~~~v~~vi~~~-iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 52 LAARLLALEGCDAVLVGG-IGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHHCCCcEEEEcc-cCccHHHHHHHcCCEEEEcCC
Confidence 455666778999999985 999999999999999997776
No 65
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.85 E-value=1.4e+02 Score=31.78 Aligned_cols=77 Identities=18% Similarity=0.308 Sum_probs=55.7
Q ss_pred EEeCHHHHHHHHHhcCCChHHHHHHhccC---------------CcCC-CCCCCcce----eEEEecCCcEEE-------
Q 000298 1420 KCLYANQFRDLRSRCCPSELAYIDSLSRC---------------RNWD-AKGGKSKS----FFVKTLDDRFII------- 1472 (1706)
Q Consensus 1420 ~~y~p~~F~~LR~~~gi~e~~yi~SLs~~---------------~~~~-~sgGKSGS----~F~~T~D~rFII------- 1472 (1706)
.+|-...|..+-+..+++++++...+... .+|. ...||||. .||+..+.-|.|
T Consensus 2 rifkt~~F~r~akk~~~sd~~L~~ai~el~~G~~~adLGGgv~K~Ria~~g~GKsGG~R~I~~~~~~~~~~~l~~y~K~~ 81 (120)
T PF06296_consen 2 RIFKTKWFKRWAKKEGLSDDDLCEAIEELEQGLIDADLGGGVRKKRIARKGKGKSGGYRVIYFFKQEDRIFFLYIYAKNE 81 (120)
T ss_pred ceeecHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccchhccEEEEEeccCCCCCCCceEEEEEEEeCCEEEEEEEEcccc
Confidence 46777899999999999998887655331 1232 35699995 455555555544
Q ss_pred -eecCHHHHHHHHHHHHHHHHHHhh
Q 000298 1473 -KEIKKTEFDSFDKFALHYFKYMNE 1496 (1706)
Q Consensus 1473 -Ktis~~E~~~fl~~lp~Yf~yi~~ 1496 (1706)
-.|+..|++.|.+++..|+.+-.+
T Consensus 82 ~~nis~~El~~lk~la~~l~~~~~~ 106 (120)
T PF06296_consen 82 KANISDKELKALKKLAKELLNLSEE 106 (120)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 246899999999999999988765
No 66
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=32.10 E-value=79 Score=37.17 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=35.2
Q ss_pred HHHHhcCCCcEEEEccC-cCHHHHHHHHHcCCeEEecCCh-------HHHHHHHHHhCC
Q 000298 390 MDMIDMCHPNVVLVEKT-VSRDIQESILEKGMTLVFDMKL-------HRLERVARCTGS 440 (1706)
Q Consensus 390 V~rI~~~~pnVVLVeks-Vs~~A~~~L~~~gItvv~nVK~-------~~LeRIAR~TGA 440 (1706)
+++|++++|||||+..+ -.....+.|.+.||.++.- .. ..++.+++.+|.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~-~~~~~~~~~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWV-DATSIEQIANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEe-CCCCHHHHHHHHHHHHHHcCC
Confidence 47899999999998643 3345667799999988754 22 235666666664
No 67
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=31.12 E-value=77 Score=37.90 Aligned_cols=14 Identities=21% Similarity=0.143 Sum_probs=6.6
Q ss_pred cchHHHHHHHHHHH
Q 000298 286 GESWVDIVTSLSWE 299 (1706)
Q Consensus 286 ~~~W~d~ls~L~~e 299 (1706)
...|++.|..++.+
T Consensus 223 ~v~~Ld~L~~~~~~ 236 (275)
T PF13324_consen 223 QVAQLDKLLDLCQE 236 (275)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34566655554433
No 68
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.72 E-value=1.1e+02 Score=40.69 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=24.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHH
Q 000298 249 KFKEEKQRAMEKVVSGKFKAIVSQLLKSVGVVSSGKDGESWVD 291 (1706)
Q Consensus 249 ~~~~~~~~~l~~~~~~h~~~lv~qLL~~~~~sl~sK~~~~W~d 291 (1706)
|.+-....+|.+++-..+...+--||+..=. ...|.-
T Consensus 373 kCSAAaLDVLanvf~~elL~~l~PlLk~~L~------~~~W~v 409 (885)
T KOG2023|consen 373 KCSAAALDVLANVFGDELLPILLPLLKEHLS------SEEWKV 409 (885)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHHHHHHHcC------cchhhh
Confidence 5677888888888877766665566654433 367853
No 69
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.22 E-value=1.2e+02 Score=35.53 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=34.4
Q ss_pred HHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCC-------hHHHHHHHHHhCCc
Q 000298 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK-------LHRLERVARCTGSP 441 (1706)
Q Consensus 390 V~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK-------~~~LeRIAR~TGA~ 441 (1706)
+++|++++||||++...-.....+++..++|.++.--. ...++.+++++|-.
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGKE 123 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCcH
Confidence 47899999999998765555555655566665554211 12477788887753
No 70
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.87 E-value=83 Score=36.35 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=33.3
Q ss_pred HHHHhcCCCcEEEEccCcCHH-HHHHHHH-cCCeEEecCC-------hHHHHHHHHHhCC
Q 000298 390 MDMIDMCHPNVVLVEKTVSRD-IQESILE-KGMTLVFDMK-------LHRLERVARCTGS 440 (1706)
Q Consensus 390 V~rI~~~~pnVVLVeksVs~~-A~~~L~~-~gItvv~nVK-------~~~LeRIAR~TGA 440 (1706)
+++|++++||+||+....... ..+.|.+ +||.++.--. ...++.+++.+|-
T Consensus 67 ~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~ 126 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLLGKVLGK 126 (262)
T ss_pred HHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHHHHHhCC
Confidence 478999999999998666541 3344554 8888654322 1236677777765
No 71
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.60 E-value=1.1e+02 Score=37.32 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=37.5
Q ss_pred HHHHhcCCCcEEEEccCcC-----HHHHHHHHHcCCeEEec-C-------ChHHHHHHHHHhCCc
Q 000298 390 MDMIDMCHPNVVLVEKTVS-----RDIQESILEKGMTLVFD-M-------KLHRLERVARCTGSP 441 (1706)
Q Consensus 390 V~rI~~~~pnVVLVeksVs-----~~A~~~L~~~gItvv~n-V-------K~~~LeRIAR~TGA~ 441 (1706)
+++|++++||+||...... ..+.+.|.+.||.++.- . -...++.|++.+|..
T Consensus 84 ~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i~~lg~i~g~~ 148 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGRE 148 (342)
T ss_pred HHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHHHHHHHHhCCH
Confidence 5789999999999875442 34667789999887542 1 134578888888864
No 72
>PRK11411 fecB iron-dicitrate transporter substrate-binding subunit; Provisional
Probab=25.98 E-value=1.4e+02 Score=35.93 Aligned_cols=52 Identities=10% Similarity=0.275 Sum_probs=35.6
Q ss_pred HHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCC---h----HHHHHHHHHhCCc
Q 000298 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK---L----HRLERVARCTGSP 441 (1706)
Q Consensus 390 V~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK---~----~~LeRIAR~TGA~ 441 (1706)
+++|++++||+||+...-.....+.|.+.+-+++...+ - ..++.+++.+|-.
T Consensus 94 ~E~I~al~PDLIi~~~~~~~~~~~~L~~~~pv~~~~~~~~~~~~~~~~i~~lg~i~g~e 152 (303)
T PRK11411 94 LEAIAALKPDLIIADSSRHAGVYIALQKIAPTLLLKSRNETYQENLQSAAIIGEVLGKK 152 (303)
T ss_pred HHHHHhCCCCEEEecccccHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHHHHHHhCCH
Confidence 68999999999999765555666777777544444322 1 2356888888853
No 73
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=25.64 E-value=95 Score=31.43 Aligned_cols=35 Identities=9% Similarity=0.263 Sum_probs=27.3
Q ss_pred HHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEe
Q 000298 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVF 424 (1706)
Q Consensus 390 V~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~ 424 (1706)
++.|++++||||++..+......+.|.+.||.++.
T Consensus 54 ~E~l~~l~pDlvi~~~~~~~~~~~~l~~~~i~~~~ 88 (148)
T cd00636 54 LEKIAALKPDLIIANGSGLEAWLDKLSKIAIPVVV 88 (148)
T ss_pred HHHHhccCCCEEEEecccchhHHHHHHHhCCCEEE
Confidence 36788899999999987776667778888855543
No 74
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=25.56 E-value=1.4e+02 Score=34.26 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=35.6
Q ss_pred HHHHhcCCCcEEEEccC-cCHHHHHHHHHcCCeEEe-c-C-ChH----HHHHHHHHhCC
Q 000298 390 MDMIDMCHPNVVLVEKT-VSRDIQESILEKGMTLVF-D-M-KLH----RLERVARCTGS 440 (1706)
Q Consensus 390 V~rI~~~~pnVVLVeks-Vs~~A~~~L~~~gItvv~-n-V-K~~----~LeRIAR~TGA 440 (1706)
+++|++++|||||+... .+....+.|.+.||.++. . . ... .++.+++.+|-
T Consensus 51 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~~~lg~i~g~ 109 (235)
T cd01149 51 AEGVLSLKPTLVIASDEAGPPEALDQLRAAGVPVVTVPSTPTLDGLLTKIRQVAQALGV 109 (235)
T ss_pred HHHhhccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHHhCC
Confidence 37899999999999653 455677889999998764 2 1 222 35566666665
No 75
>PF07450 HycH: Formate hydrogenlyase maturation protein HycH; InterPro: IPR010005 This family contains the bacterial formate hydrogenlyase maturation protein HycH, which is approximately 140 residues long. This may be required for the conversion of a precursor form of the large subunit of hydrogenlyase 3 into a mature form [].
Probab=24.95 E-value=58 Score=34.96 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=17.9
Q ss_pred CCcccceeeEEEecCcceEEEEEEEeeec
Q 000298 1605 IDVMDYSLLVGVDSQRRELVCGIIDYLRQ 1633 (1706)
Q Consensus 1605 ~nvMDYSLLvGid~~~~~l~vGIID~Lr~ 1633 (1706)
..||=|||-||-| +|+||||..
T Consensus 24 kqV~yYSLaIGHh-------vGvIDcle~ 45 (131)
T PF07450_consen 24 KQVMYYSLAIGHH-------VGVIDCLEK 45 (131)
T ss_pred hheeEEEeeeccc-------cceEeechh
Confidence 3588899999975 699999843
No 76
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=24.67 E-value=1.9e+02 Score=35.80 Aligned_cols=56 Identities=9% Similarity=0.152 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCChHHHHHHHHHhCCcee
Q 000298 387 KSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPIL 443 (1706)
Q Consensus 387 ~~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK~~~LeRIAR~TGA~Iv 443 (1706)
..+++.|+..+|.+|+...+....+ +.|.++||.++..|..-.+-+.+.-.|++++
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~P~~~-~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGRPDQA-RALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCChHHH-HHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 3567788889999999998887765 7799999999999988777778888898876
No 77
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=22.91 E-value=63 Score=32.45 Aligned_cols=43 Identities=19% Similarity=0.456 Sum_probs=30.7
Q ss_pred hcccCCCCCCCCChhcccceeeecCcEEEEEEEecCccccCCCCCCCcEEEeecCCCCCCCCCCCCCCceEEc
Q 000298 803 LNQRKQCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVI 875 (1706)
Q Consensus 803 ~~~~~~C~sC~~pm~~H~rsYvH~~g~ltI~Ve~l~~~~~lpge~~g~I~MWs~Ck~C~~~~g~~~sTp~v~M 875 (1706)
..+.|.||+|+.+ .| ++.. -.|| .|.+|+....-..-||.++|
T Consensus 32 ~~~~~~Cp~C~~~--~V---------------kR~a----------~GIW---~C~kCg~~fAGgay~P~t~~ 74 (89)
T COG1997 32 QRAKHVCPFCGRT--TV---------------KRIA----------TGIW---KCRKCGAKFAGGAYTPVTPA 74 (89)
T ss_pred HhcCCcCCCCCCc--ce---------------eeec----------cCeE---EcCCCCCeeccccccccchH
Confidence 5788999999997 22 2221 2488 59999987666667886665
No 78
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=22.71 E-value=50 Score=36.59 Aligned_cols=54 Identities=24% Similarity=0.331 Sum_probs=32.1
Q ss_pred ceEEEEeCHHH---HHHHHHhcCCChHHHHHHhccCCcCCCCCCCcceeEEEecCCcEEEeec
Q 000298 1416 KYSVKCLYANQ---FRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEI 1475 (1706)
Q Consensus 1416 ~~~~~~y~p~~---F~~LR~~~gi~e~~yi~SLs~~~~~~~sgGKSGS~F~~T~D~rFIIKti 1475 (1706)
.-.++-|||.- =..|..+..+.|-+=+-|... ..|+-+++||.|.|+||||=--
T Consensus 99 EPavkkYyP~TTnld~~lK~RlnL~EgDPViS~GD------t~GRRaALFYRtSdEr~ill~S 155 (230)
T PF12226_consen 99 EPAVKKYYPGTTNLDQQLKDRLNLTEGDPVISMGD------TTGRRAALFYRTSDERYILLFS 155 (230)
T ss_dssp STTEEEB-GGG--S-HHHHHHHT--TT-EEEEEEE------TT--EEEEEEETTTTEEEEEEE
T ss_pred chhhhhcCCCCccHHHHHHHhhccccCCceeeecC------CCCceEEEEEeccCceEEEEEc
Confidence 33478888832 236666666666544444432 4699999999999999998543
No 79
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=22.62 E-value=1.5e+02 Score=35.16 Aligned_cols=52 Identities=13% Similarity=0.286 Sum_probs=40.1
Q ss_pred HHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecC------ChHHHHHHHHHhCCc
Q 000298 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDM------KLHRLERVARCTGSP 441 (1706)
Q Consensus 390 V~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nV------K~~~LeRIAR~TGA~ 441 (1706)
+++|++++||+|++...-.......+.+.|+.++.-- -...++.+++.+|-.
T Consensus 108 ~E~i~~lkPDlIi~~~~~~~~~~~~~~~~~~pvv~~~~~~~~~~~~~i~~lg~~~g~e 165 (319)
T COG0614 108 LEKIVALKPDLIIASSSSQDDLIYKLLSLGAPVVVVDYGSLDDIKEQIRLLGKALGKE 165 (319)
T ss_pred HHHhhhcCCCEEEEecccchhHHHHHHhcCCCEEEECCcchhhHHHHHHHHHHHhCcH
Confidence 7899999999999999855555666889998876543 345678888887764
No 80
>PRK15084 formate hydrogenlyase maturation protein HycH; Provisional
Probab=22.35 E-value=65 Score=34.62 Aligned_cols=22 Identities=45% Similarity=0.711 Sum_probs=18.0
Q ss_pred CCcccceeeEEEecCcceEEEEEEEeeec
Q 000298 1605 IDVMDYSLLVGVDSQRRELVCGIIDYLRQ 1633 (1706)
Q Consensus 1605 ~nvMDYSLLvGid~~~~~l~vGIID~Lr~ 1633 (1706)
..||=|||-||-| +|+||||..
T Consensus 26 ~qV~yYSLaIGHh-------vGvIDcle~ 47 (133)
T PRK15084 26 QQVMYYSLAIGHH-------VGVIDCLEA 47 (133)
T ss_pred hheeEEEeecccc-------cceEecchh
Confidence 3588899999976 699999843
No 81
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=21.62 E-value=2.6e+02 Score=29.90 Aligned_cols=52 Identities=8% Similarity=0.097 Sum_probs=41.5
Q ss_pred HHHHHHhcCCCcEEEEccCcCHHHHHHHHHcCCeEEecCChHHHHHHHHHhCC
Q 000298 388 SVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGS 440 (1706)
Q Consensus 388 ~lV~rI~~~~pnVVLVeksVs~~A~~~L~~~gItvv~nVK~~~LeRIAR~TGA 440 (1706)
.+.+.|++.++|+|+| ..+.+-|...|.++||-++.-....+=+.|-....+
T Consensus 56 ~~a~~l~~~gvdvvi~-~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 56 RIAELLVDEGVDVVIA-SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHHcCCCEEEE-CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 4667889999999998 569999999999999999988775555555554443
No 82
>PHA02682 ORF080 virion core protein; Provisional
Probab=20.92 E-value=1.4e+02 Score=33.99 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=43.5
Q ss_pred eeeEEecCCceeEeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhhHHHHHHHHH
Q 000298 931 TTYNMCVPPQKLEFSNSINKWLKEEFQNVYTKGILLFSEVESSLKQIGSRFVGSTLNLQGSLKEFSVTSEILK 1003 (1706)
Q Consensus 931 ~v~ev~lPp~~l~~~~~~~~~l~~E~~~v~~k~~~~f~sV~~rL~~ik~~~~~~~~~~~~~~~~i~eL~~~l~ 1003 (1706)
-|+|--+|-+.|+-.++..+.+++|+.+|.+....|-.+-.+.+..|..- +..-+..|.+|+++|.
T Consensus 192 pvle~ripdkv~~~d~~~k~~ikkeladiadsvrdl~aeS~~LtrDIE~A-------KstTq~AIdDLRrLl~ 257 (280)
T PHA02682 192 PVLEPRIPDKIIDADNDDKDLIKKELADIADSVRDLNAESLSLTRDIENA-------KSTTQAAIDDLRRLLT 257 (280)
T ss_pred ccccccCchhhhhcccchHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-------HhhHHHHHHHHHHHHh
Confidence 37888888888887777778889999888887776666655555555431 1112345566665553
No 83
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=20.88 E-value=56 Score=28.01 Aligned_cols=32 Identities=31% Similarity=0.836 Sum_probs=19.0
Q ss_pred cccccccccccchHHHHhhhccccccccCCCceeeeeecccccc
Q 000298 4 MCHHCGAELTRVKKEERKQENGKSLKLNNEGSIWSCRICGEKQE 47 (1706)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (1706)
.|.+|+|-|-. -.+.+..|..|.|.||+.+.+
T Consensus 4 rC~~C~aylNp------------~~~~~~~~~~w~C~~C~~~N~ 35 (40)
T PF04810_consen 4 RCRRCRAYLNP------------FCQFDDGGKTWICNFCGTKNP 35 (40)
T ss_dssp B-TTT--BS-T------------TSEEETTTTEEEETTT--EEE
T ss_pred ccCCCCCEECC------------cceEcCCCCEEECcCCCCcCC
Confidence 47888887743 235666889999999997653
Done!