Query 000298
Match_columns 1706
No_of_seqs 326 out of 1750
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 17:57:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000298.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_75-78//hhsearch_pdb/000298hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ybx_A Phosphatidylinositol-5- 1.0 1 1 564.9 22.8 251 1414-1675 74-394 (394)
2 2gk9_A Phosphatidylinositol-4- 1.0 1 1 556.3 16.2 249 1414-1675 66-391 (392)
3 3iyg_G T-complex protein 1 sub 1.0 1 1 394.0 26.8 258 270-567 137-406 (515)
4 3iyg_A T-complex protein 1 sub 1.0 1 1 375.6 26.4 257 270-567 139-413 (529)
5 3aq1_B Thermosome subunit; gro 1.0 1 1 375.2 24.0 258 270-567 101-369 (500)
6 1a6d_B Thermosome (beta subuni 1.0 1 1 373.8 25.2 257 270-567 149-416 (543)
7 1q3q_A Thermosome alpha subuni 1.0 1 1 371.9 25.9 257 270-567 151-418 (548)
8 1a6d_A Thermosome (alpha subun 1.0 1 1 371.1 24.7 257 270-567 148-415 (545)
9 3p9d_F T-complex protein 1 sub 1.0 1 1 370.2 14.0 255 270-567 147-422 (546)
10 3iyg_Z T-complex protein 1 sub 1.0 1 1 370.2 24.7 253 270-567 137-410 (517)
No 1
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=1.00 E-value=1 Score=564.93 Aligned_cols=251 Identities=26% Similarity=0.460 Sum_probs=228.6
Q ss_pred CCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHCCCCCC-CCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 96449999099999999986099958899973247768-88998744018974278379860599999999999999999
Q 000298 1414 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNW-DAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFK 1492 (1706)
Q Consensus 1414 ~~~~~v~~y~a~~F~~LR~~~~~~e~~fi~SLs~~~~w-~~sgGKSGs~F~kT~D~rFIIKtis~~E~~~fl~~lp~Yf~ 1492 (1706)
+.+|+|++|+|.+|++||+.||+++.+|++||++|..| .+++|||||+||+|.|+|||||||++.|+++|+++||.||+
T Consensus 74 p~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~ 153 (394)
T 2ybx_A 74 PSHFKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHNILKKYHQ 153 (394)
T ss_dssp CSEEEEEEESHHHHHHHHHHTTCCHHHHHHHHHSSCCEECC-----CCCEEECTTSSEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 88749999788999999998297999999985478764247899866879981797289996199999999999999999
Q ss_pred HHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCEEEEEEEEEECCCCC-CCCEEEECCCCCCCCCCCCCC--CCCCCCCC
Q ss_conf 996302799983000343799997534799951248999993026898-521356226753345556789--99851114
Q 000298 1493 YMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQYDLKGALHARYNTTVD--GSGDVLLD 1569 (1706)
Q Consensus 1493 yl~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~v~~~~--~~~~VL~D 1569 (1706)
||.++ +++|||+||||+|+|++. |+ +.+||||+|||+++ .|+++||||||+++|++.+++ +...||||
T Consensus 154 ~~~~~---~~~TLL~k~~Gly~v~~~----~~--~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~LkD 224 (394)
T 2ybx_A 154 YIVEC---HGITLLPQFLGMYRLNVD----GV--EIYVIVTRNVFSHRLSVYRKYDLKGSTVAREASDKEKAKELPTLKD 224 (394)
T ss_dssp HHHHT---TTCCSSCCEEEEEEEEET----TE--EEEEEEEECSSCSSSCCSEEEEECCSSSCCCCCHHHHTSSSCEECH
T ss_pred HHHHC---CCCCCHHHHCEEEEEEEC----CE--EEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECC
T ss_conf 99840---898676653178999989----90--7999999367788764201002056445776675344567654111
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC------------------------------
Q ss_conf 33101258986100978999999999965742113885221006887437------------------------------
Q 000298 1570 QNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQ------------------------------ 1619 (1706)
Q Consensus 1570 ~Nf~~~~~~~pi~l~~~~k~~L~~~l~nDt~FL~~~nvMDYSLLvGid~~------------------------------ 1619 (1706)
.||++.. .+|+|+++.|+.|++||++||.||+++|||||||||||+..
T Consensus 225 ~df~~~~--~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 302 (394)
T 2ybx_A 225 NDFINEG--QKIYIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGIHDVERAEQEEVECEENDGEEEGESDGTHPVGTP 302 (394)
T ss_dssp HHHHHTT--CCCCCCHHHHHHHHHHHHHHHHHHHHTTEESCEEEEEEEEHHHHHHHHHCC--------------------
T ss_pred CCHHHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1367469--81997899999999999999999987787664048777315543200002445555433445655445787
Q ss_pred ------------------------------------CCEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf ------------------------------------61699979985402580246888776605799998852493679
Q 000298 1620 ------------------------------------RRELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDY 1663 (1706)
Q Consensus 1620 ------------------------------------~~el~iGIIDyLr~Yt~~KklE~~vK~~~~~~~~~pTvv~P~~Y 1663 (1706)
+.+||+|||||||+|||+||+|+|+|++..+.+..||||+|++|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyyiGIIDiLq~Y~~~KklE~~~Ks~~~~~~~~iS~V~P~~Y 382 (394)
T 2ybx_A 303 PDSPGNTLNSSPPLAPGEFDPNIDVYGIKCHENSPRKEVYFMAIIXILTHYDAKKKAAHAAKTVKHGAGAEISTVNPEQY 382 (394)
T ss_dssp ------------CCCTTCCCTTTSTTEEECCTTCSSCEEEEEEEECCCEESCC-------------------CCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEECHHHH
T ss_conf 55534444322223655456444323434555777743799999986310784089999999861589999856998999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999984103
Q 000298 1664 KRRFRKFMSTHF 1675 (1706)
Q Consensus 1664 ~~RF~~~m~~yf 1675 (1706)
++||++||+++|
T Consensus 383 ~~RF~~fm~~if 394 (394)
T 2ybx_A 383 SKRFLDFIGHIL 394 (394)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999869
No 2
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=556.34 Aligned_cols=249 Identities=27% Similarity=0.477 Sum_probs=226.8
Q ss_pred CCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 96449999099999999986099958899973247768889987440189742783798605999999999999999999
Q 000298 1414 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKY 1493 (1706)
Q Consensus 1414 ~~~~~v~~y~a~~F~~LR~~~~~~e~~fi~SLs~~~~w~~sgGKSGs~F~kT~D~rFIIKtis~~E~~~fl~~lp~Yf~y 1493 (1706)
+.+|+|++|+|.+|++||+.||+++.+|++||++|..|. ++|||| +||+|.|+|||||||++.|+++|+++||+||+|
T Consensus 66 p~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~-s~GKSG-~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~~ 143 (392)
T 2gk9_A 66 PSHFKFKEYCPQVFRNLRDRFGIDDQDYLVSLTRNPPSE-SEGSDG-RFLISYDRTLVIKEVSSEDIADMHSNLSNYHQY 143 (392)
T ss_dssp CSSBEEEEESHHHHHHHHHTTTCCHHHHHHHHHSSCCCC-CC------CCCCTTSSEEEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCC-CCCCCC-EEEECCCCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 886499997979999999980989899998743787455-798762-379869986899960999999999999999999
Q ss_pred HHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCEEEEEEEEEECCCCC-CCCEEEECCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 96302799983000343799997534799951248999993026898-52135622675334555678999--8511143
Q 000298 1494 MNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQYDLKGALHARYNTTVDGS--GDVLLDQ 1570 (1706)
Q Consensus 1494 l~~~~~~~~~TlL~Ki~Gly~i~~k~~~~g~~~k~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~v~~~~~~--~~VL~D~ 1570 (1706)
|.++ +++|||+||||+|+|++. |++ .+||||+|||+++ .|+++||||||+++|++.+.+.. ..||||.
T Consensus 144 ~~~~---~~~TLL~k~~Gly~v~~~----~~~--~~~vVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~LkD~ 214 (392)
T 2gk9_A 144 IVKC---HGNTLLPQFLGMYRVSVD----NED--SYMLVMRNMFSHRLPVHRKYDLKGSLVSREASDKEKVKELPTLRDM 214 (392)
T ss_dssp HHHT---TSCSSSCCEEEEEECCBS----SCC--CEEEEEECSSCSSSCCSCCCEECC-----------------CCBTT
T ss_pred HHHH---CCCCCHHHHCEEEEEEEC----CEE--EEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 9840---798655653068999989----907--9999993677887641034450565457766752235666611131
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC------------------------------
Q ss_conf 31012589861009789999999999657421138852210068874376------------------------------
Q 000298 1571 NFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQR------------------------------ 1620 (1706)
Q Consensus 1571 Nf~~~~~~~pi~l~~~~k~~L~~~l~nDt~FL~~~nvMDYSLLvGid~~~------------------------------ 1620 (1706)
||++.. .+|+|+++.|+.|++||++||.||+++|||||||||||+...
T Consensus 215 df~~~~--~~i~l~~~~k~~l~~~l~~D~~FL~~~~iMDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (392)
T 2gk9_A 215 DFLNKN--QKVYIGEEEKKIFLEKLKRDVEFLVQLKIMDYSLLLGIHDIIRGSEPEEEAPVREDESEVDGDCSLTGPPAL 292 (392)
T ss_dssp C--CCC--CCCCC----CHHHHHHHHHHHHHHHHTTCCCCCEECCCBCC-------------------------------
T ss_pred CHHHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 156259--869878999999999999999999876876630587663155432112222344555545553323456432
Q ss_pred --------------------------------------------CEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf --------------------------------------------169997998540258024688877660579999885
Q 000298 1621 --------------------------------------------RELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPT 1656 (1706)
Q Consensus 1621 --------------------------------------------~el~iGIIDyLr~Yt~~KklE~~vK~~~~~~~~~pT 1656 (1706)
..||+|||||||+|||+||+|+|+|++..+.+..+|
T Consensus 293 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyylGIIDiLq~Y~~~KklE~~~Ks~~~~~~~~iS 372 (392)
T 2gk9_A 293 VGSYGTSPEGIGGYIHSHRPLGPGEFESFIDVYAIRSAEGAPQKEVYFMGLIDILTQYDAKKKAAHAAKTVKHGAGAEIS 372 (392)
T ss_dssp --------------------------------------------CBCCCEECCCC-------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 24567885453333432222366656544432343455567775279999977400087008999999986157899974
Q ss_pred CCCHHHHHHHHHHHHHHHC
Q ss_conf 2493679999999984103
Q 000298 1657 VISPKDYKRRFRKFMSTHF 1675 (1706)
Q Consensus 1657 vv~P~~Y~~RF~~~m~~yf 1675 (1706)
+|+|++|++||++||+++|
T Consensus 373 ~v~P~~Y~~RF~~fm~~~~ 391 (392)
T 2gk9_A 373 TVHPEQYAKRFLDFITNIF 391 (392)
T ss_dssp --CHHHHHHHHHHHTC---
T ss_pred EECHHHHHHHHHHHHHHHH
T ss_conf 6898999999999999960
No 3
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=393.99 Aligned_cols=258 Identities=21% Similarity=0.390 Sum_probs=242.2
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999862345788773048999999999999712789989975692367179980289978733698589920478999
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~w~d~ls~L~~~Av~~V~p~~~~g~~mDi~~yVkIKkI~GGs~~dS~iI~GvV~~K~vahk~ 349 (1706)
...|++.+.+++++|..+.|.+.+++++++|+..|.++......+|+++||+|+|++||+..||++++|++|+|.+.|++
T Consensus 137 ~~~l~~va~tsl~sK~i~~~~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~ 216 (515)
T 3iyg_G 137 RDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPR 216 (515)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCC
T ss_conf 99999999987148752557999999999999842335688854564230589983699801016884179827878988
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------C---CCHHH-HHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCC
Q ss_conf 97412597389996422557644------4---30665-89999999999998750898589981676999999999829
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1706)
Q Consensus 350 M~~~i~nPrIlLL~~~Ley~r~~------l---ssle~-i~QE~eyL~~lV~kI~~~~pnVVLveksVs~~A~~~L~~~g 419 (1706)
||++++||||||++|+|||++.+ + .++++ +++|++|++++|++|++.||+||+++++|+++|++||.++|
T Consensus 217 m~~~ien~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~ 296 (515)
T 3iyg_G 217 MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRAN 296 (515)
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 86144410799981555444234674289678999999999999999999999994799899978866789999998789
Q ss_pred CEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCEE-EEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 8699538967899999996994511466-89999312-226999994213445447998898249999958999521246
Q 000298 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKH-CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVS 497 (1706)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~Ii~Sid-L~~~~LG~-C~~f~v~~~~~~~~~~~~g~k~~~Ktl~fieGc~~~~gcT~~ 497 (1706)
|++++++++.+|+|||++|||.|+++++ ++...||+ |+.|++.++++ ++++||+||+.+.+||
T Consensus 297 I~av~~~~k~~leria~~tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~-------------~~~~~i~g~~~~~~~T-- 361 (515)
T 3iyg_G 297 ITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGD-------------EYFTFITECKDPKACT-- 361 (515)
T ss_pred CEEECCCCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCCCEEEEEEECC-------------CEEEEEECCCCCCEEE--
T ss_conf 5666667889999999995992642102367666287562899999878-------------1699995788887689--
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEECCC
Q ss_conf 7751111225756421014554345998379999999999999999999998531381750897110257
Q 000298 498 LYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 567 (1706)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~ILLRG~t~~~L~evKrvl~~ai~v~y~l~lE~s~l~ggGa~~~~~ 567 (1706)
|+|||+|+.+|+|+||+++||++++++++.+..+++||||++...
T Consensus 362 -------------------------IllrG~t~~~l~E~er~i~Dal~~~r~~~~~~~ivpGGGa~e~~~ 406 (515)
T 3iyg_G 362 -------------------------ILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 406 (515)
T ss_pred -------------------------EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHH
T ss_conf -------------------------998489889999999999999999999962896893788999999
No 4
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=375.60 Aligned_cols=257 Identities=18% Similarity=0.235 Sum_probs=238.2
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCC
Q ss_conf 999998623457887730489999999999997127899899-7569236717998028997873369858992047899
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK 348 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~w~d~ls~L~~~Av~~V~p~~~~g-~~mDi~~yVkIKkI~GGs~~dS~iI~GvV~~K~vahk 348 (1706)
...|++.+.+++++|....|.+.|++|+++|+..|.+...+| ..+|+. +|+|++++||+..||++++|++|+|.+.|.
T Consensus 139 ~e~l~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~g~~~~dv~-~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~ 217 (529)
T 3iyg_A 139 RDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVN-SINVLKAHGRSQMESMLINGYALNCVVGSQ 217 (529)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-EEEEEEECCCCCCCEEEEEEEEEECCCCCC
T ss_conf 8999999999856675532078999999999999751244787666544-179999559885543899616874586435
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCC------C---CCHHH-HHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHC
Q ss_conf 997412597389996422557644------4---30665-8999999999999875089858998167699999999982
Q 000298 349 HMPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 418 (1706)
Q Consensus 349 ~M~~~i~nPrIlLL~~~Ley~r~~------l---ssle~-i~QE~eyL~~lV~kI~~~~pnVVLveksVs~~A~~~L~~~ 418 (1706)
.||++++||||+|++|+|+|++.+ + .+++. .++|++|++.++++|++.|+|||+++++|++.|++||.++
T Consensus 218 ~m~~~ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~ 297 (529)
T 3iyg_A 218 GMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEA 297 (529)
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHC
T ss_conf 68751688669996277654535678549968999999999999999999999999549989998788778999999986
Q ss_pred CCEEEECCCHHHHHHHHHHHCCCEECCCC-CC------CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 98699538967899999996994511466-89------999312226999994213445447998898249999958999
Q 000298 419 GMTLVFDMKLHRLERVARCTGSPILSSGS-LT------SQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTR 491 (1706)
Q Consensus 419 gItvv~nVK~~~LeRIAR~TGA~Ii~Sid-L~------~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~fieGc~~~ 491 (1706)
||++++++++.+|+|||++|||.|+++++ |+ ..+||+|+.|+++++++ ++|+||+||+.+
T Consensus 298 gI~av~~v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~ 364 (529)
T 3iyg_A 298 GAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICD-------------DELILIKNTKAR 364 (529)
T ss_pred CCCEECCCCHHHHHHHHHHHCCEEECCHHCCCCHHCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCC
T ss_conf 9803634798889999998599566140104531005763376543899998679-------------539999757998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEECCC
Q ss_conf 5212467751111225756421014554345998379999999999999999999998531381750897110257
Q 000298 492 LGCTVSLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 567 (1706)
Q Consensus 492 ~gcT~~~~~~~~~~~~~~~~~~~~~~~~~~~ILLRG~t~~~L~evKrvl~~ai~v~y~l~lE~s~l~ggGa~~~~~ 567 (1706)
.+|| |+|||+++.+|+|+||+++||++++++++.++++++||||++...
T Consensus 365 ~~~T---------------------------I~lrG~t~~~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~l 413 (529)
T 3iyg_A 365 TSAS---------------------------VILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAAL 413 (529)
T ss_pred CEEE---------------------------EEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHH
T ss_conf 6589---------------------------997786277999999999999999999963890884786799999
No 5
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=1.00 E-value=1 Score=375.24 Aligned_cols=258 Identities=22% Similarity=0.355 Sum_probs=241.1
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999862345788773048999999999999712789989975692367179980289978733698589920478999
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~w~d~ls~L~~~Av~~V~p~~~~g~~mDi~~yVkIKkI~GGs~~dS~iI~GvV~~K~vahk~ 349 (1706)
...|++.+.+++++|....|.+.|++|+++|+..|.++......+|+.++|+|+|++||+..||++++|++|+|.++|+.
T Consensus 101 ~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~ 180 (500)
T 3aq1_B 101 EAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPN 180 (500)
T ss_dssp HHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEESSCGGGCEEESEEEESCCCSSTT
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCC
T ss_conf 78999999998623113555789999999999996133468744451122799983589800117882269940578899
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC---------CCCHHH-HHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCC
Q ss_conf 97412597389996422557644---------430665-89999999999998750898589981676999999999829
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1706)
Q Consensus 350 M~~~i~nPrIlLL~~~Ley~r~~---------lssle~-i~QE~eyL~~lV~kI~~~~pnVVLveksVs~~A~~~L~~~g 419 (1706)
||++++||||||++++|||++.+ ..+++. +++|++|++.++++|++.|++||+++++|++.|++||.++|
T Consensus 181 m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~ 260 (500)
T 3aq1_B 181 MPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAG 260 (500)
T ss_dssp SCSEEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTT
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 85443598799993776666544632476489999999999999999999999997493999987776779999998789
Q ss_pred CEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 8699538967899999996994511466-899993122269999942134454479988982499999589995212467
Q 000298 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSL 498 (1706)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~Ii~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~fieGc~~~~gcT~~~ 498 (1706)
|++++++++.+|+|||++|||.++++++ ++...||+|+.|++.++++ ++++||+||+.+..||
T Consensus 261 I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~T--- 324 (500)
T 3aq1_B 261 IYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRG-------------GKMTYVTGCQNSKAVT--- 324 (500)
T ss_dssp CEEECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSS-------------SEEEEEEEETTCCCEE---
T ss_pred EEEEEECCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------EEEEEEECCCCCCEEE---
T ss_conf 899972799999999998499574560118986788760899998457-------------6899997788875699---
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEECCC
Q ss_conf 751111225756421014554345998379999999999999999999998531381750897110257
Q 000298 499 YPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 567 (1706)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~ILLRG~t~~~L~evKrvl~~ai~v~y~l~lE~s~l~ggGa~~~~~ 567 (1706)
|+|||+++.+|+|+||+++||++++++++.++++++||||++...
T Consensus 325 ------------------------I~lrG~t~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~ 369 (500)
T 3aq1_B 325 ------------------------VLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVEL 369 (500)
T ss_dssp ------------------------EEEEESSHHHHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHH
T ss_pred ------------------------EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf ------------------------993589677999999999989999999997888788872999999
No 6
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=1.00 E-value=1 Score=373.76 Aligned_cols=257 Identities=21% Similarity=0.325 Sum_probs=241.3
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999862345788773048999999999999712789989975692367179980289978733698589920478999
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~w~d~ls~L~~~Av~~V~p~~~~g~~mDi~~yVkIKkI~GGs~~dS~iI~GvV~~K~vahk~ 349 (1706)
...|++.+.+++++|....|.+.|++|+++|+..|.++......+|+ ++|+|+|++||+..||++++|++|+|.+.|+.
T Consensus 149 ~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~ 227 (543)
T 1a6d_B 149 KALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDF-DNIQVVKKQGGAIDDTQLINGIIVDKEKVHPG 227 (543)
T ss_dssp HHHHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECG-GGEEEEEEESSCGGGCEEESEEEESCCCSSTT
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC-CEEEEEEECCCCCCCEEEECCEEEECCCCCCC
T ss_conf 79999999998525424454779999999999984533368744334-44899983689812226873489831778888
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC---------CCCHHH-HHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCC
Q ss_conf 97412597389996422557644---------430665-89999999999998750898589981676999999999829
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1706)
Q Consensus 350 M~~~i~nPrIlLL~~~Ley~r~~---------lssle~-i~QE~eyL~~lV~kI~~~~pnVVLveksVs~~A~~~L~~~g 419 (1706)
||++++||||||++++|||++.+ ..+++. +++|++|++.++++|++.|++||+++++|++.|++||.++|
T Consensus 228 m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~ 307 (543)
T 1a6d_B 228 MPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAG 307 (543)
T ss_dssp SCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTT
T ss_pred CCCEECCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 75331387699992455644345774389688999999999999999999999997299899988886889999998789
Q ss_pred CEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 8699538967899999996994511466-899993122269999942134454479988982499999589995212467
Q 000298 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSL 498 (1706)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~Ii~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~fieGc~~~~gcT~~~ 498 (1706)
|++++++++.+|+|||++|||.|+++++ ++...||+|+.|+++++++ ++|+||+||+.+.+||
T Consensus 308 I~av~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~T--- 371 (543)
T 1a6d_B 308 IYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGE-------------DYMTFVTGCKNPKAVS--- 371 (543)
T ss_dssp CEEECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETT-------------EEEEEEEEESSSSCEE---
T ss_pred EEEECCCCHHHHHHHHHHHCCCEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEE---
T ss_conf 668646899999999998299265551449987788763899999668-------------1499996688875599---
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEECCC
Q ss_conf 751111225756421014554345998379999999999999999999998531381750897110257
Q 000298 499 YPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 567 (1706)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~ILLRG~t~~~L~evKrvl~~ai~v~y~l~lE~s~l~ggGa~~~~~ 567 (1706)
|+|||+++.+|+|+||+++||++++++++.++++++||||++...
T Consensus 372 ------------------------I~lrG~t~~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~ 416 (543)
T 1a6d_B 372 ------------------------ILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEI 416 (543)
T ss_dssp ------------------------EEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHH
T ss_pred ------------------------EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf ------------------------996579777999999999999999999997888167864999999
No 7
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=1.00 E-value=1 Score=371.88 Aligned_cols=257 Identities=24% Similarity=0.388 Sum_probs=241.0
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999862345788773048999999999999712789989975692367179980289978733698589920478999
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~w~d~ls~L~~~Av~~V~p~~~~g~~mDi~~yVkIKkI~GGs~~dS~iI~GvV~~K~vahk~ 349 (1706)
...|++.+.+++++|....|.+.|++|+++|+..|.++......+|+ ++|+|+|++||+..||++++|++|+|.+.|+.
T Consensus 151 ~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~ 229 (548)
T 1q3q_A 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDL-DNIKFEKKAGEGVEESELVRGVVIDKEVVHPR 229 (548)
T ss_dssp HHHHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCG-GGEEEEEEEBSCGGGCEEESSEEESCCCSSTT
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC-CEEEEEEECCCCCCCEEEEEEEEEECCCCCCC
T ss_conf 89999999987503002455579999999999984434578754557-73899994489830238971089841577899
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------C---CCHHH-HHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCC
Q ss_conf 97412597389996422557644------4---30665-89999999999998750898589981676999999999829
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1706)
Q Consensus 350 M~~~i~nPrIlLL~~~Ley~r~~------l---ssle~-i~QE~eyL~~lV~kI~~~~pnVVLveksVs~~A~~~L~~~g 419 (1706)
||++++||||||++++|||++.+ + .+++. +++|++|++.++++|++.|++||+++++|++.|++||.++|
T Consensus 230 m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~ 309 (548)
T 1q3q_A 230 MPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYG 309 (548)
T ss_dssp SCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTT
T ss_pred CCCEECCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 85651488799992676754346784399688999999999999999999999998596999986785889999999879
Q ss_pred CEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 8699538967899999996994511466-899993122269999942134454479988982499999589995212467
Q 000298 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSL 498 (1706)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~Ii~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~fieGc~~~~gcT~~~ 498 (1706)
|++++++++.+|+|||++|||.|+++++ ++...||+|+.|++.++++ ++|+||+||+.+..||
T Consensus 310 I~av~~~~k~~le~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~T--- 373 (548)
T 1q3q_A 310 IMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAG-------------ENMIFVEGCKNPKAVT--- 373 (548)
T ss_dssp CEEECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETT-------------EEEEEEECCSSCSSEE---
T ss_pred CEEECCCCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEE---
T ss_conf 578733799999999998599475552549987788763899999668-------------3399996589997699---
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEECCC
Q ss_conf 751111225756421014554345998379999999999999999999998531381750897110257
Q 000298 499 YPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 567 (1706)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~ILLRG~t~~~L~evKrvl~~ai~v~y~l~lE~s~l~ggGa~~~~~ 567 (1706)
|+|||+++.+|+|+||+++||++++++++.+.++++||||++...
T Consensus 374 ------------------------I~lrG~te~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~ 418 (548)
T 1q3q_A 374 ------------------------ILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIEL 418 (548)
T ss_dssp ------------------------EEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEECTTHHHHHH
T ss_pred ------------------------EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf ------------------------997789767899999999979999999997788056875999999
No 8
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=1.00 E-value=1 Score=371.11 Aligned_cols=257 Identities=23% Similarity=0.338 Sum_probs=241.4
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999862345788773048999999999999712789989975692367179980289978733698589920478999
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~w~d~ls~L~~~Av~~V~p~~~~g~~mDi~~yVkIKkI~GGs~~dS~iI~GvV~~K~vahk~ 349 (1706)
...|++.+.+++++|....|.+.|++|+++|+..|.++......+|+ ++|+|+|++||+..||++++|++|+|.+.|+.
T Consensus 148 ~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~ 226 (545)
T 1a6d_A 148 DATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDT-ANIKVDKKNGGSVNDTQFISGIVIDKEKVHSK 226 (545)
T ss_dssp HHHHHHHHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCG-GGEEEEECCCSCSTTCEEESEEEESCCCSCTT
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC-CEEEEEEECCCCCEEEEEEEEEEEECCCCCCC
T ss_conf 99999999998735403454779999999999997233678753434-31799995589720027884079822578899
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC---------CCCHHH-HHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCC
Q ss_conf 97412597389996422557644---------430665-89999999999998750898589981676999999999829
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1706)
Q Consensus 350 M~~~i~nPrIlLL~~~Ley~r~~---------lssle~-i~QE~eyL~~lV~kI~~~~pnVVLveksVs~~A~~~L~~~g 419 (1706)
||++++||||||++++|||++.+ ..+++. +++|++|++.++++|++.|++||+++++|++.|+++|.++|
T Consensus 227 m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~ 306 (545)
T 1a6d_A 227 MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEG 306 (545)
T ss_dssp SCSEEEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHT
T ss_pred CCCEECCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 85640588799991677755346784399678999999999999999999999997299899987886689999999879
Q ss_pred CEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 8699538967899999996994511466-899993122269999942134454479988982499999589995212467
Q 000298 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVSL 498 (1706)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~Ii~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~fieGc~~~~gcT~~~ 498 (1706)
|++++++++.+|+|||++|||.|+++++ ++...||+|+.|++.++++ ++++||+||..+..||
T Consensus 307 I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~T--- 370 (545)
T 1a6d_A 307 IYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGD-------------DRMTFVMGCKNPKAVS--- 370 (545)
T ss_dssp CEEECSCCHHHHHHHHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETT-------------EEEEEEEEESCSSCEE---
T ss_pred EEEECCCCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEE---
T ss_conf 267524899999999998599254660329987778862899999558-------------3499996688874589---
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEECCC
Q ss_conf 751111225756421014554345998379999999999999999999998531381750897110257
Q 000298 499 YPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 567 (1706)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~ILLRG~t~~~L~evKrvl~~ai~v~y~l~lE~s~l~ggGa~~~~~ 567 (1706)
|+|||+++.+|+|+||+++||++++++++.+.++++||||++...
T Consensus 371 ------------------------I~lrG~te~~l~E~kr~l~DAl~~~r~a~~~g~iVpGGGa~e~~~ 415 (545)
T 1a6d_A 371 ------------------------ILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAEL 415 (545)
T ss_dssp ------------------------EEECCSSSTTHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHH
T ss_pred ------------------------EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHH
T ss_conf ------------------------997689889999999999999999999986898886857999999
No 9
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=1.00 E-value=1 Score=370.23 Aligned_cols=255 Identities=19% Similarity=0.259 Sum_probs=237.2
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999862345788773048999999999999712789989975692367179980289978733698589920478999
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~w~d~ls~L~~~Av~~V~p~~~~g~~mDi~~yVkIKkI~GGs~~dS~iI~GvV~~K~vahk~ 349 (1706)
...|++.+.+++++|....|.+.|++++++|+..|.+. .+..+|+. +|+|+|++||+..||++++|++|+|.+.|++
T Consensus 147 ~~~L~~vA~tsl~sKi~~~~~d~la~l~vdaV~~V~~~--~~~~~dl~-~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~ 223 (546)
T 3p9d_F 147 REFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDA--QADNLDLH-MVEIMQMQHLSPKDTTFIKGLVLDHGGRHPD 223 (546)
T ss_dssp CHHHHHHHHHHTCSTTHHHHCSSHHHHHHHHHHHTHHH--HHTTCCGG-GEEEECCCCSCTTTCCCCSSCEESCCCCSSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEECC--CCCCCCCH-HEEEEEECCCCCCCCEEEEEEEEECCCCCCC
T ss_conf 89999999998178764459999999998862574037--89866620-2699995588712127986699824666556
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC---------CCCHHH-HHHHHHHHHHHHHHHHCCC----------CCEEEECCCCCH
Q ss_conf 97412597389996422557644---------430665-8999999999999875089----------858998167699
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCH----------PNVVLVEKTVSR 409 (1706)
Q Consensus 350 M~~~i~nPrIlLL~~~Ley~r~~---------lssle~-i~QE~eyL~~lV~kI~~~~----------pnVVLveksVs~ 409 (1706)
||++++||+|||++|+|||++.+ ..+++. +++|++++++.+++|+.++ |+||+++++|++
T Consensus 224 m~~~~en~kIll~~~~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~ 303 (546)
T 3p9d_F 224 MPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDP 303 (546)
T ss_dssp SCSSBCSCCCCEECCCSSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCH
T ss_pred CCCEECCCEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 75263076699962766655455674499768999999999999999999999999999874201588649984676768
Q ss_pred HHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 99999998298699538967899999996994511466-89999312226999994213445447998898249999958
Q 000298 410 DIQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGC 488 (1706)
Q Consensus 410 ~A~~~L~~~gItvv~nVK~~~LeRIAR~TGA~Ii~Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~fieGc 488 (1706)
.|++||.++||++++++++.+|+|||++|||.|+++++ ++...||+|+.|+++++.+ ++++||+||
T Consensus 304 ~Al~~L~~~gI~~vr~v~~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~i~g~ 370 (546)
T 3p9d_F 304 MSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGE-------------EKFTYVTEN 370 (546)
T ss_dssp HHHHHHTTTTCEEECCCCHHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSS-------------CCCEECSSC
T ss_pred HHHHHHHHCCCEEEECCCHHHHHHHHHHHCCEEECCHHHCCHHHCCCCCEEEEEEECC-------------CEEEEEECC
T ss_conf 9999999889846813798889999998598794562008986788562799998469-------------469999568
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEECCC
Q ss_conf 9995212467751111225756421014554345998379999999999999999999998531381750897110257
Q 000298 489 PTRLGCTVSLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 567 (1706)
Q Consensus 489 ~~~~gcT~~~~~~~~~~~~~~~~~~~~~~~~~~~ILLRG~t~~~L~evKrvl~~ai~v~y~l~lE~s~l~ggGa~~~~~ 567 (1706)
+.+.+|| |+|||+|+.+|+|+||+++||++++++++.++++++||||++...
T Consensus 371 ~~~~~~t---------------------------I~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~ 422 (546)
T 3p9d_F 371 TDPKSCT---------------------------ILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIAL 422 (546)
T ss_dssp SCCSCEE---------------------------EECCCSCHHHHHHHHHHHHHHHHHHHHHTTSCCEEETTTHHHHHH
T ss_pred CCCCEEE---------------------------EEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHH
T ss_conf 9975589---------------------------997798778999999999999999999833995995887999999
No 10
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=370.20 Aligned_cols=253 Identities=19% Similarity=0.265 Sum_probs=236.7
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999862345788773048999999999999712789989975692367179980289978733698589920478999
Q 000298 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1706)
Q Consensus 270 v~qLL~~~~~sl~sK~~~~w~d~ls~L~~~Av~~V~p~~~~g~~mDi~~yVkIKkI~GGs~~dS~iI~GvV~~K~vahk~ 349 (1706)
...|++.+.+++++|....|.+.|++++++|+..|.+. +..+|++ +|+|+|++||+..||++++|++|+|.+.|+.
T Consensus 137 ~~~L~~va~tsl~sKi~~~~~d~la~l~vdaV~~V~~~---~~~~dl~-~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~ 212 (517)
T 3iyg_Z 137 RETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQ---DEPIDLF-MVEIMEMKHKSETDTSLIRGLVLDHGARHPD 212 (517)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC---CCCCCHH-HHEEEEECCCCCCCCCEEEEEEEECCCCCCC
T ss_conf 89999999987045542047889999999886033147---8767735-7136651488732000575479832577877
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------C---CCHHH-HHHHHHHHHHHHHHHHCCCCC---------EEEECCCCCHH
Q ss_conf 97412597389996422557644------4---30665-899999999999987508985---------89981676999
Q 000298 350 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPN---------VVLVEKTVSRD 410 (1706)
Q Consensus 350 M~~~i~nPrIlLL~~~Ley~r~~------l---ssle~-i~QE~eyL~~lV~kI~~~~pn---------VVLveksVs~~ 410 (1706)
||++++||+|||++++|||++.+ + .+++. +++|++|++..+++|+.++++ ||+++++|++.
T Consensus 213 m~~~ien~kIll~~~~le~~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~ 292 (517)
T 3iyg_Z 213 MKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPF 292 (517)
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf 64322387499953665555444541699689999999999999999999999998505554125786389735667879
Q ss_pred HHHHHHHCCCEEEECCCHHHHHHHHHHHCCCEECCCC-CCCCC-CEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 9999998298699538967899999996994511466-89999-312226999994213445447998898249999958
Q 000298 411 IQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQK-LKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGC 488 (1706)
Q Consensus 411 A~~~L~~~gItvv~nVK~~~LeRIAR~TGA~Ii~Sid-L~~~~-LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~fieGc 488 (1706)
|++||.++||++++++++.+|+|||++|||.|+++++ ++... ||+|+ |+++++++ ++++||+||
T Consensus 293 al~~L~~~gI~~v~~v~~~~leria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~-------------~~~~~~~g~ 358 (517)
T 3iyg_Z 293 SLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGE-------------EKFTFIEKC 358 (517)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHCCEEECCHHHCCCCCCCCCCE-EEEEEECC-------------CEEEEEECC
T ss_conf 9999998798799825799999999986997854534275000477514-99999768-------------258999478
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEECCC
Q ss_conf 9995212467751111225756421014554345998379999999999999999999998531381750897110257
Q 000298 489 PTRLGCTVSLYPMIVLFIVLFEWLRRHTSLLCNQVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 567 (1706)
Q Consensus 489 ~~~~gcT~~~~~~~~~~~~~~~~~~~~~~~~~~~ILLRG~t~~~L~evKrvl~~ai~v~y~l~lE~s~l~ggGa~~~~~ 567 (1706)
+.+.+|| |+|||+|+.+|+|+||+++||++++++++.++++++||||++...
T Consensus 359 ~~~~~~T---------------------------I~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~ 410 (517)
T 3iyg_Z 359 NNPRSVT---------------------------LLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAM 410 (517)
T ss_pred CCCHHHE---------------------------EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHH
T ss_conf 9833443---------------------------431488678999999999988999999973661854862899999
Done!