Query 000300
Match_columns 1705
No_of_seqs 368 out of 1776
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:26:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0230 Phosphatidylinositol-4 100.0 8E-235 2E-239 2186.4 82.8 1327 189-1685 232-1597(1598)
2 cd00139 PIPKc Phosphatidylinos 100.0 3.5E-67 7.5E-72 611.5 28.1 257 1385-1675 52-313 (313)
3 COG5253 MSS4 Phosphatidylinosi 100.0 5.8E-68 1.3E-72 615.3 11.3 359 1267-1685 242-607 (612)
4 smart00330 PIPKc Phosphatidyli 100.0 8.3E-66 1.8E-70 606.9 27.2 259 1381-1674 21-342 (342)
5 KOG0229 Phosphatidylinositol-4 100.0 6.5E-58 1.4E-62 533.3 22.6 252 1387-1675 95-420 (420)
6 PF01504 PIP5K: Phosphatidylin 100.0 4.9E-56 1.1E-60 507.3 16.9 222 1417-1674 2-252 (252)
7 PLN03185 phosphatidylinositol 100.0 9.4E-55 2E-59 547.1 26.8 248 1387-1675 401-765 (765)
8 cd03334 Fab1_TCP TCP-1 like do 100.0 2.4E-47 5.3E-52 438.3 27.0 255 268-534 2-261 (261)
9 TIGR02344 chap_CCT_gamma T-com 100.0 1.2E-40 2.5E-45 417.7 25.6 256 271-539 145-413 (525)
10 TIGR02339 thermosome_arch ther 100.0 3.6E-38 7.8E-43 394.8 29.6 255 271-539 145-412 (519)
11 KOG0364 Chaperonin complex com 100.0 2.2E-39 4.8E-44 373.2 15.2 254 271-539 148-413 (527)
12 cd03343 cpn60 cpn60 chaperonin 100.0 1.9E-37 4.2E-42 388.3 29.1 255 271-539 144-409 (517)
13 cd03339 TCP1_epsilon TCP-1 (CT 100.0 3.1E-37 6.7E-42 386.9 28.3 256 270-539 153-419 (526)
14 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2.1E-36 4.5E-41 379.5 26.7 255 271-539 138-410 (527)
15 cd03340 TCP1_eta TCP-1 (CTT or 100.0 8.3E-36 1.8E-40 373.8 29.0 249 271-539 149-411 (522)
16 PTZ00212 T-complex protein 1 s 100.0 6.6E-36 1.4E-40 375.1 26.9 248 271-539 159-418 (533)
17 TIGR02343 chap_CCT_epsi T-comp 100.0 9.8E-36 2.1E-40 373.3 28.4 255 271-539 158-423 (532)
18 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2.6E-35 5.6E-40 368.8 28.7 249 270-539 146-406 (517)
19 cd03333 chaperonin_like chaper 100.0 1.4E-35 3.1E-40 330.5 23.2 206 272-526 3-209 (209)
20 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.6E-35 3.5E-40 370.8 26.1 254 271-539 137-408 (515)
21 TIGR02342 chap_CCT_delta T-com 100.0 2.9E-35 6.2E-40 368.3 26.9 254 271-539 138-409 (517)
22 cd03337 TCP1_gamma TCP-1 (CTT 100.0 3.3E-35 7.2E-40 364.8 23.2 225 271-539 145-372 (480)
23 TIGR02340 chap_CCT_alpha T-com 100.0 1.2E-34 2.7E-39 364.1 27.5 255 271-539 142-414 (536)
24 TIGR02347 chap_CCT_zeta T-comp 100.0 1.2E-34 2.5E-39 363.2 27.0 252 271-539 146-418 (531)
25 TIGR02345 chap_CCT_eta T-compl 100.0 1.3E-34 2.7E-39 363.0 25.0 250 271-539 149-412 (522)
26 KOG0361 Chaperonin complex com 100.0 1E-34 2.2E-39 329.4 15.9 248 273-540 155-416 (543)
27 TIGR02341 chap_CCT_beta T-comp 100.0 4.6E-33 9.9E-38 348.4 27.9 248 271-539 148-407 (519)
28 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 2.7E-32 5.9E-37 339.0 22.6 233 271-539 142-375 (484)
29 cd00309 chaperonin_type_I_II c 100.0 8.9E-32 1.9E-36 333.4 23.5 221 271-539 137-358 (464)
30 TIGR02346 chap_CCT_theta T-com 100.0 2.7E-31 5.8E-36 333.3 26.8 250 271-539 149-410 (531)
31 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 3.9E-31 8.5E-36 328.5 26.1 249 271-539 117-377 (485)
32 KOG0358 Chaperonin complex com 100.0 2.6E-31 5.7E-36 301.4 14.6 256 270-539 154-426 (534)
33 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.6E-30 5.6E-35 320.6 23.7 223 270-539 138-362 (472)
34 KOG0363 Chaperonin complex com 100.0 2.7E-30 5.9E-35 291.9 17.5 268 251-539 129-411 (527)
35 KOG0360 Chaperonin complex com 100.0 8.3E-30 1.8E-34 297.0 15.0 260 266-539 143-420 (545)
36 KOG0359 Chaperonin complex com 100.0 3E-29 6.6E-34 289.5 14.3 253 270-539 142-409 (520)
37 COG0459 GroL Chaperonin GroEL 100.0 1.3E-27 2.8E-32 296.9 22.2 245 275-539 142-406 (524)
38 KOG0362 Chaperonin complex com 99.9 3.9E-24 8.6E-29 251.7 21.8 232 289-540 171-414 (537)
39 PRK00013 groEL chaperonin GroE 99.9 3.4E-23 7.4E-28 260.2 24.8 221 271-539 141-420 (542)
40 PRK12849 groEL chaperonin GroE 99.9 4.1E-23 8.9E-28 259.5 25.5 220 271-539 141-420 (542)
41 cd03344 GroEL GroEL_like type 99.9 5.1E-23 1.1E-27 257.9 26.0 221 270-539 138-418 (520)
42 PTZ00114 Heat shock protein 60 99.9 9.8E-23 2.1E-27 257.1 25.5 220 271-539 153-433 (555)
43 PRK12851 groEL chaperonin GroE 99.9 1.3E-22 2.8E-27 255.1 23.2 221 271-539 142-421 (541)
44 TIGR02348 GroEL chaperonin Gro 99.9 1.7E-22 3.7E-27 253.5 23.9 220 271-539 140-419 (524)
45 PRK12850 groEL chaperonin GroE 99.9 5.1E-22 1.1E-26 250.0 25.3 222 270-539 141-421 (544)
46 PRK12852 groEL chaperonin GroE 99.9 2.2E-21 4.7E-26 244.6 24.9 220 271-539 142-421 (545)
47 CHL00093 groEL chaperonin GroE 99.9 7.7E-21 1.7E-25 239.0 22.8 222 271-539 141-420 (529)
48 PRK14104 chaperonin GroEL; Pro 99.8 4.1E-20 8.9E-25 232.8 24.6 220 271-539 142-421 (546)
49 PLN03167 Chaperonin-60 beta su 99.8 2.4E-20 5.3E-25 236.3 18.4 230 271-539 196-475 (600)
50 KOG0357 Chaperonin complex com 99.8 6.9E-20 1.5E-24 207.6 8.5 143 386-539 144-287 (400)
51 KOG0230 Phosphatidylinositol-4 95.4 0.014 2.9E-07 79.4 4.6 100 781-895 658-757 (1598)
52 KOG0356 Mitochondrial chaperon 88.5 2.6 5.6E-05 53.5 10.8 217 295-539 173-435 (550)
53 PF02579 Nitro_FeMo-Co: Dinitr 48.7 40 0.00087 32.9 5.9 49 388-437 44-92 (94)
54 cd01143 YvrC Periplasmic bindi 47.1 40 0.00087 37.1 6.3 51 390-440 53-110 (195)
55 TIGR03659 IsdE heme ABC transp 40.9 40 0.00087 40.2 5.4 52 390-441 84-141 (289)
56 cd00851 MTH1175 This uncharact 40.8 49 0.0011 32.9 5.2 40 387-427 53-92 (103)
57 cd01144 BtuF Cobalamin binding 40.3 54 0.0012 37.7 6.2 52 390-441 50-108 (245)
58 PRK09534 btuF corrinoid ABC tr 39.2 51 0.0011 40.9 6.1 52 390-441 112-170 (359)
59 PLN02667 inositol polyphosphat 35.2 61 0.0013 39.2 5.6 45 1590-1634 195-250 (286)
60 cd01138 FeuA Periplasmic bindi 34.5 67 0.0014 37.0 5.8 50 390-440 59-112 (248)
61 cd00562 NifX_NifB This CD repr 34.0 76 0.0016 31.4 5.3 39 388-427 52-90 (102)
62 PF06296 DUF1044: Protein of u 33.2 1.3E+02 0.0027 32.1 6.9 77 1393-1469 2-106 (120)
63 COG1433 Uncharacterized conser 27.3 1.5E+02 0.0032 31.7 6.2 52 388-440 56-107 (121)
64 cd01146 FhuD Fe3+-siderophore 26.7 1.2E+02 0.0026 35.1 6.2 52 390-441 58-115 (256)
65 PF13324 GCIP: Grap2 and cycli 26.6 95 0.0021 37.1 5.4 12 287-298 224-235 (275)
66 PF01497 Peripla_BP_2: Peripla 25.7 1.2E+02 0.0025 34.5 5.7 51 391-441 54-112 (238)
67 PRK03379 vitamin B12-transport 23.3 1.2E+02 0.0026 35.7 5.3 51 390-440 65-122 (260)
68 cd04743 NPD_PKS 2-Nitropropane 22.6 1.9E+02 0.0041 35.7 6.9 56 387-443 72-127 (320)
69 PF12226 Astro_capsid_p: Turke 22.5 51 0.0011 36.5 1.8 52 1391-1448 101-155 (230)
70 cd01140 FatB Siderophore bindi 22.2 1.6E+02 0.0034 34.4 6.1 52 390-441 65-123 (270)
71 COG1997 RPL43A Ribosomal prote 21.2 72 0.0016 32.0 2.4 43 776-848 32-74 (89)
72 PF04810 zf-Sec23_Sec24: Sec23 21.0 55 0.0012 28.0 1.4 32 4-47 4-35 (40)
73 cd01147 HemV-2 Metal binding p 20.8 1.2E+02 0.0026 35.1 4.7 51 390-440 67-126 (262)
74 KOG2023 Nuclear transport rece 20.5 2E+02 0.0043 38.4 6.5 38 249-292 373-410 (885)
75 COG1504 Uncharacterized conser 20.1 2.8E+02 0.0061 29.2 6.3 49 393-441 57-111 (121)
76 cd01141 TroA_d Periplasmic bin 20.0 1E+02 0.0023 33.9 3.8 34 390-423 62-96 (186)
No 1
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=100.00 E-value=7.7e-235 Score=2186.42 Aligned_cols=1327 Identities=41% Similarity=0.653 Sum_probs=967.0
Q ss_pred CCCccCCC--cccCCCCCCCCcccccccccCCCCCcccCCCCCCcCC---cCCCCCCcccCCCcccchHHHHHHHHHHHH
Q 000300 189 NDNEMDMQ--IWEPPEPEDPEDDIEGSIAYNDDDEDEECGDGTKWGK---PSSLSHFRDEGGGRLKFKEEKQRAMEKVVS 263 (1705)
Q Consensus 189 ~~~d~~~~--~w~pp~p~~~~d~~~~~~~~~ddd~~~~~~~~~~~~~---~ss~~~~~~~~~~~~~~~~~~~~~L~~~~~ 263 (1705)
+++||+++ +|.||+||+|+||+|+.++|+||+++| .++.|+. +.+++.......+ +..++..+.|+.+..
T Consensus 232 ~~~d~~~~~~~~~p~~pene~dd~~~~~~~~~~~~~D---~~~~~~~~~~s~s~s~~~~~~~~--~~~ee~~~~m~~~~~ 306 (1598)
T KOG0230|consen 232 EILDFENNGLLWEPPEPENEEDDAESVLADDDDDEGD---TSGKWNPLRLSNSFSAPEYKSKD--KSAEEDEKVMRNVVE 306 (1598)
T ss_pred cccchhhccCCCCCCCCCcccccchhccccccccccc---cccccccccccCccCCCCccccc--cchhhcchhhhcccc
Confidence 78999999 999999999999999988675554433 2367876 5778887444444 688899999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCC-CchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEe
Q 000300 264 GKFKAIVSQLLKSVGVVSSGK-DGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFK 342 (1705)
Q Consensus 264 ~h~~~ll~qLL~~~~~slssK-~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~ 342 (1705)
.||++++.||++.+.+++.++ ...+|.++++.|+|+|+..++|+.+.|+.|||.+|||||||+||++.||++|+||||+
T Consensus 307 ~~fr~~~a~Llr~~~ls~~~d~~~~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~s 386 (1598)
T KOG0230|consen 307 SHFRALVAQLLRSENLSVVMDGAHQEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCS 386 (1598)
T ss_pred chHHHHHHHHhcccCcCccccchhhhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEee
Confidence 999999999999999985443 4568999999999999999999998899999999999999999999999999999999
Q ss_pred eccCCCCCCccccCCcEEEEeeecccCccc--CCcHHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcC
Q 000300 343 KHAAHKHMPTEYKNPRLLLIRGVLGLSSSG--LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1705)
Q Consensus 343 Knvahk~M~~~i~NPRILLL~~~LEy~r~e--lsSle~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~g 419 (1705)
|+++||.|.+++++|||+|+.|+|||+|.. |+|+++ ++||++||+.+|+||.+.+||||||+|+|+++||+||..+|
T Consensus 387 Kn~~~k~M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~ 466 (1598)
T KOG0230|consen 387 KNVAHKRMATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKG 466 (1598)
T ss_pred cchhhhhhhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccC
Confidence 999999999999999999999999999986 999999 99999999999999999999999999999999999999999
Q ss_pred CeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000300 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498 (1705)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTILL 498 (1705)
|+++.|||++.|+||||||||+|++|+| ++.++||+|+.|+++++.++| +..||+|||+||++++||||||
T Consensus 467 I~lvlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~h--------k~sKTlmffegc~~~lG~TiLL 538 (1598)
T KOG0230|consen 467 ISLVLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEH--------KPSKTLMFFEGCPKPLGCTILL 538 (1598)
T ss_pred eEEEEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcc--------cchhhhHHhhcCCCCCCceEEe
Confidence 9999999999999999999999999999 999999999999999999875 4679999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCcccccCCcccc-cCCCCccccccccccCCCCCcccccCcccCCC
Q 000300 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTIPFAEV-AGILPMEQQHPALENGNSNVSCFEHSSVESGS 577 (1705)
Q Consensus 499 RG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1705)
||++.++|++||+|++++++++||+.||++||+|.||++........ +..+++... +.+..|....+..+.
T Consensus 539 rG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~~~~~~~~~~~~~~~~~~------~~s~~~~~t~st~~~-- 610 (1598)
T KOG0230|consen 539 RGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASISSPKLSIPTSVETSIINR------SISTSPGETDSTAEK-- 610 (1598)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccccccccceeccccccc------ccccCCCCCcchhcc--
Confidence 99999999999999999999999999999999999999886433221 111110000 011111111000000
Q ss_pred CCCCCCCCCCCcCCCCCcCCCCCCCceeeccCCCCcccCCccccccccccccccCCCCcccccCCC--cccccccccccc
Q 000300 578 STMDIPISNGFHEDGSYANSGPEGESILSYEPYNPAVFSGFSSLSASLRKVIGDNFPLSSAAAYPS--LTSYFGFRGREQ 655 (1705)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~P~~~~~~~~~--l~~~~~~~~re~ 655 (1705)
.+......+. ...+. ....++++..|+ .....|+...++++. ..+....-++..
T Consensus 611 ----a~~~~~~~e~-~~~~~-~~~~~~ls~sp~------------------~~~~~~~~~i~P~~~~~e~~~~~~~~~~~ 666 (1598)
T KOG0230|consen 611 ----APVEALQVEP-NRFNG-ALSSELLSSSPF------------------LEFPLDLLEIAPGELVIETRLSSYSKGPK 666 (1598)
T ss_pred ----cchhhhccch-hhhhc-ccccceeecccc------------------cccCCCccccCCccceeecchhhhcCchh
Confidence 0000000000 00000 001122222221 111111111000000 000000000000
Q ss_pred ccccccC--CCccccccccCCCCCCccCCCCCccccccCCCCCCCCCCCCCCCCCC--CCCCCC----CcccCCcccccC
Q 000300 656 SGQITED--VPVSTIMDASLDGPCDTEAKSSSDEEKSLDGQPTSLPSCPEAPLSMG--KDCGND----EDHSQSQEDANA 727 (1705)
Q Consensus 656 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~d~~~ 727 (1705)
...+... .....++.. ..+....+.+. .. .+ ..... ...+.... ...++. +-+.+..++.++
T Consensus 667 ~~~lv~~~es~~~~~~~s---~~~~~~~l~e~---~~--~~-~~~~~-~k~~~~~~~~~~~~~~~~~~~~e~~~s~~~~~ 736 (1598)
T KOG0230|consen 667 QNGLVPAHESVLNDLHES---TLSILSKLPET---RS--GT-HEGNE-DKGPGLEPELANNQNIQRPEETEEQSSKDALD 736 (1598)
T ss_pred hccccccccccccccccc---cccccccccch---hc--cc-chhcc-ccCccccccccccccccchhhhhhhhcccCCC
Confidence 0000000 000000000 00000000000 00 00 00000 00010000 000100 111226678999
Q ss_pred CCCCCeEEEEEeeccCCCCCccCCccEEEEeccCCCCccHHHHHHHHhhcccCCCCCCCCChhcccceeeecCcEEEEEE
Q 000300 728 SLDSQSILVLMSSRNALRGTICEQSHFSHIMFYKNFDVPLGKFLQDNLLNQRKQCASCSELPEAHFYYYARHNKQLTIRV 807 (1705)
Q Consensus 728 p~~HQsI~VL~Ss~~~~~~~pC~~P~lv~I~fY~~~D~tLGqFLed~~~~~~~~C~sC~~pm~~H~r~YvH~~g~ltI~v 807 (1705)
|.+||+|+||||++|.+++.+|++|||++|+|||.+|++|||||+++||+++|.|++|.+||++|+|+|||++|+++|.|
T Consensus 737 ~~~HQsilVl~ss~~~~k~~~C~r~~l~~ikyy~~~D~~lg~fL~~~~f~~~~~C~sC~~~~laHv~~yvh~~g~l~I~v 816 (1598)
T KOG0230|consen 737 PSSHQSILVLFSSRSVLKGSVCERPHLLRIKYYGSFDKPLGRFLRDYLFDQRYMCPSCNEPMLAHVRCYVHGNGSLTISV 816 (1598)
T ss_pred ccccceeEEEEeeeeeccCCccccccEEEEEeeccccchHhHHHHHHHhcccccCccccchHHHHHHHHhhccCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCccccCCCCCCCcEEEeecCCCCCCCCCCCCCCceEEcccccccccHHHHHhhhcCCCCCCCCCCCCCCCcccccee
Q 000300 808 KRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAACGLSFGKFLELSFSHHSSSTRLSSCGHSLHRDFLY 887 (1705)
Q Consensus 808 e~l~~~~~lpge~~~~I~MWs~Ck~C~~~~g~~~sTp~v~MSd~tw~~SFGKfLEL~F~~~~~~~r~~~C~H~l~rDhlr 887 (1705)
++++.. +||+.+|+|||||||++|++. ||+|++|+||++||++||||||||+||+|+++.|++.|||+|||||||
T Consensus 817 ~~~~e~--l~~e~~~kI~~w~~ClkC~~~---~~sT~rv~~Sdaaw~lSfgKfLEl~fs~~a~~~R~~~C~Hsl~rD~L~ 891 (1598)
T KOG0230|consen 817 KKLPEL--LPGEQKGKIWMWSRCLKCNRF---PPSTRRVVMSDAAWGLSFGKFLELSFSNHATANRVASCGHSLHRDCLR 891 (1598)
T ss_pred eccccc--cccccCceEEEEeccccCCCC---CCCcceeEcchhhHhhhHHHHHHhhhccccccccccCCcchhhhhhhh
Confidence 999987 899999999999999999985 899999999999999999999999999999999999999999999999
Q ss_pred ecccCCeEEEEEeeeeeeeEEecCCCeeEeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhh
Q 000300 888 FFGLGPMVGMFKYSPFTTYNMCVPPQKLEFSNSINKWLKEEFQNVYTKGILLFSEVESSLKQIGSRFVGSTLNLQGSLKE 967 (1705)
Q Consensus 888 yFg~~~~Va~f~YspI~v~ev~lPp~~l~~~~~~~~~l~~e~~~v~~k~~~~f~sV~~rL~~i~~~~~~~~~~~~~~~~~ 967 (1705)
|||||+|||+|+|++|++|+|++||.+|+|++..++|+.+|+++|+.||+.+|++|.++|.+|+.+ .+. ...
T Consensus 892 ffgf~~mva~f~ys~i~v~~v~lpp~~l~~~~~~~~~~~~e~k~v~~k~~~~~n~v~~~l~~i~~~----~~~----~~~ 963 (1598)
T KOG0230|consen 892 FFGFGNMVACFRYSPIEVYEVDLPPSKLEFNHIQQEWLQEEIKEVIEKGEELYNEVLERLSRIAEK----DEN----RPL 963 (1598)
T ss_pred hcccCCceeeeeeccceeEEEeCChhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----ccc----cch
Confidence 999999999999999999999999999999954559999999999999999999999999999975 111 357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhhHhHHHHHHHHHHHHHhhhhHHhhhccCCCCcc-cccCCccCCCCC
Q 000300 968 FSVTSEILKQERSVFEVDIQKTVAKKVHSDEALHKLLSLNRLRWELLIESCIWDRRLHSLLLPDPTV-VITGATEKPGPE 1046 (1705)
Q Consensus 968 i~eL~~~l~~e~~~~~~~l~~~~~~~~~~~~~~~~il~lN~l~r~L~~~~~~Wd~rl~~l~~~~~~~-~~~~~~~~~~~~ 1046 (1705)
+.+|+.+|.+|+.+|++.|+.++.+.....+..+++|.||++||.|...++.||.||+.+....+.. ..+.+.++. +
T Consensus 964 i~~l~~~l~~e~~~f~~~l~~~~~~~~~~~~~s~d~l~l~~~rr~l~~~s~~w~~~l~s~~~~~k~~~~~~~~~~~~--~ 1041 (1598)
T KOG0230|consen 964 IQELKELLKHEKKEFKQNLQPIFTLEVDDGQLSHDILALNRDRRALLASSYLWDERLISLSKSLKLESSKDTKPKES--E 1041 (1598)
T ss_pred hhhhhhhhhhhHHHHHHhhhhhhhhccccCcchhhHHHHHHHHHHHHhhhccccccchhhhhhhccccccccccccc--c
Confidence 8999999999999999999999998887788899999999999999999999999999875432200 000011111 1
Q ss_pred cccccccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCccCccchhhhhhhhhcccCCCCCCCCcCcccccccc-----ccc
Q 000300 1047 QTKVKMDGTTAKGNEVPEPEVDSGNGDNVSNNFGNLEVLPDVAAEADELVVKEIPIDGPDRESGERDHKKTT-----VLK 1121 (1705)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 1121 (1705)
+ ..+ +.....+++......+......+...+..+... .+.... +...+....... +..
T Consensus 1042 ~-----~~~-~~~~r~p~~~k~~~~~~~~~~~~s~~~~~~~~~----------lp~~~~-s~~~d~~~~~~~~~~~~~~s 1104 (1598)
T KOG0230|consen 1042 T-----NST-AKRKRSPEPQKGVDEDSFLTDSSSDVSSLEHLN----------LPLPED-SNSTDTGLSGPSEVLEDNES 1104 (1598)
T ss_pred c-----cCc-cccccCchhhccccccccccccccccCcccccc----------CCCCCc-ccccchhccCcccccccccc
Confidence 0 000 000111111000000000000000000000000 000000 000000000000 000
Q ss_pred ccccc--ccc-----CCCCccccccccccccCCCCCCCCCCCccccccccccccccccccCCcccccCCCCccCCCCCCC
Q 000300 1122 DVETS--IAS-----DLSSTSLANEDSMVRSNVSDYLSGDDNVQAGKFLMSENLQVDKVVPNSQYLANSGSVVDPNASKN 1194 (1705)
Q Consensus 1122 ~~e~~--~~~-----~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~ 1194 (1705)
..+.. ..+ .....++.+..+.+|.. .... ....|.... +...++. +.
T Consensus 1105 ~~~~~~~v~n~~s~~~~~~~~~~~~l~~~~~g--------------~r~~------~~~~P~s~~----~~~~~~~--~~ 1158 (1598)
T KOG0230|consen 1105 IDEMLGSVRNTYSLANKVRKILKQILDSATIG--------------NRAN------PKSSPFSGQ----DHSTDLP--LE 1158 (1598)
T ss_pred hhhcccccccccchhhHHHHHHHHhccccccc--------------cccc------CCCCCCchh----hhccccc--cc
Confidence 00000 000 00000000001111100 0000 000111000 0000000 00
Q ss_pred CCccccccchhhhccccccCchHHHHH-HHHHhhccCCCCCccccccCCCCCCCchhhhhcccCccccccCCCCCceeee
Q 000300 1195 ETSTHSLLSDLEKLNGWFWMPFSELQQ-IYMKDLQRGFVPKFECVSRYTPEHLPTVYQLISEEGTRMHIPLGAENYMVSD 1273 (1705)
Q Consensus 1195 ~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~k~~~v~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~vv~V 1273 (1705)
....+.. ..+...|++.||..+.. .+.++.+... ++........|.++........+.++|+.+|++.++.+|+|
T Consensus 1159 ~~~~~~~---e~~~~~~~e~~~~~~~~~~~~~e~~lns-~~~~~~~~~~~k~~~s~~~s~~~~~~rLl~p~~~ndl~vp~ 1234 (1598)
T KOG0230|consen 1159 SNPIHVL---EKELSSWIEDPLTNMYYREATKELSLNS-QKNSAETKEPPKYPSSESESEPESSSRLLLPLGLNDLVVPV 1234 (1598)
T ss_pred cCCcccc---ccccHHHHhhhhhhHhHHHHHHHHHhhc-chhhcccccCCcCcccccccccccccceeccccCCcccCCc
Confidence 0000100 01445799999988765 5544443222 22111222333333332223346778999999999999999
Q ss_pred ccCCchhhHHhhhcCccccccccccccCCCCCCCCcccccccccccc-cccccccc-CCCCCCCCCCCcccccccccCCc
Q 000300 1274 YEGELSSIIACALAVLKEMPLSTVVFNEDSGRDGDMAVKTIDSLRSL-TRIPTMAS-SLWSVNGSSDSDSIYASLSISSE 1351 (1705)
Q Consensus 1274 ~edEpSSiIA~aL~s~dy~~~l~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~s-s~~s~~~~~~s~~~~~~~s~~~~ 1351 (1705)
|||||+|+|||||++.+|..+... . .....-..+.+ .+...... ..|... +.+
T Consensus 1235 ~edpp~s~ia~al~s~~~~~q~~~----p-------~~sis~~~S~~~~~~s~~~e~~~~~~~-sl~------------- 1289 (1598)
T KOG0230|consen 1235 YEDPPPSLIAYALSSKERINQESS----P-------GLSISFSLSNLQGRLSKISEFDDTKSE-SLD------------- 1289 (1598)
T ss_pred ccCCCchhhhhhhcchhhccCCCC----C-------Cccccccccccccchhhhhhhhhhhhc-ccc-------------
Confidence 999999999999999887654431 0 00000000000 00000000 000000 000
Q ss_pred cccccccccccccccCCCCCCCCCceeeeccccCCCcceEEEEeCHHHHHHHHHHcCCChHHHHHHhccCCcCCCCCCCc
Q 000300 1352 DSRFSSFDGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKGGKS 1431 (1705)
Q Consensus 1352 d~~~~~~d~~~~l~s~~~~e~~~~~v~~~~~f~~~~~~~~~~~y~p~~F~~LR~~~gi~e~~fi~SLs~~~~~~~sgGKS 1431 (1705)
.+.+.+... ..++.++++. ++..+++.++|+.|+.+|+|++|||++|++||+.||.++++||+||+||.+|.++||||
T Consensus 1290 ~s~l~~s~~-~~~e~l~~~~-~~~~~h~~~~f~egk~k~svk~~yAe~F~~LR~~c~~sEe~fIrSLsRc~~W~aqGGKS 1367 (1598)
T KOG0230|consen 1290 NSGLESSSY-RRGENLQKSK-LETRTHLEYQFSEGKAKYSVKCYYAEQFRALRKICCPSEEDFIRSLSRCVKWEAQGGKS 1367 (1598)
T ss_pred ccccchhhh-cchhhccccc-cccccceeeeccCCceEEEEEEEehhhHHHHHHhhCchHHHHHHHHhcCcccccCCCcc
Confidence 000000000 1233333332 45678999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEecCCcEEEEecCHHHHHHHHHHHHHHHHHHhhhcCCCCCceeeeeeEEEEeeccccCCCCccccccCccccchh
Q 000300 1432 KSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVSWIDCFSPFGILLFVPSCKCLIF 1511 (1705)
Q Consensus 1432 Gs~F~~T~D~rFIIKtis~~E~~~f~~~lp~Yf~y~~~~~~~~~~TlL~ki~Gly~i~~~~~~~~~~~~~~~~~~~~~~~ 1511 (1705)
||+|+||.|+|||||+|++.|+++|++|||+||+||.+++++..||+||||||+|||
T Consensus 1368 gs~F~KTlDDRFIiKq~sk~EleSFikFAP~YFkYl~~s~~~~~PT~LAKIlGiyqV----------------------- 1424 (1598)
T KOG0230|consen 1368 GSFFAKTLDDRFIIKQMSKTELESFIKFAPAYFKYLTESISQKSPTCLAKILGIYQV----------------------- 1424 (1598)
T ss_pred cceeeccccchhhhhhccHHHHHHHHhhhHHHHHHHHHHHhcCCcchhhhhheeEEE-----------------------
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCCceeEEEEEEEeccCCCCccceeecCCCcccccccccCCCCCccccccchhcccCCCCeeeChHHHHHHH
Q 000300 1512 LQVTIRQPKSGKEMRHDLMVMENLTFERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQ 1591 (1705)
Q Consensus 1512 ~~~~ik~~~~g~~~k~~~iVMeNlf~~~~i~~~yDLKGS~~~R~~~~~~~~~~VLkD~nf~~~~~~~pi~l~~~~k~~L~ 1591 (1705)
.+|++++|++.||++||||||||+++++|+||||||+|||+++++.+.+.||+|+||+++++++||||++++|+.|.
T Consensus 1425 ---~vK~~~sgke~K~DvmVMENLfY~r~vsRifDLKGS~RnR~v~~t~~~d~VLLDeNlVe~~~~sPIfV~~~sK~lL~ 1501 (1598)
T KOG0230|consen 1425 ---SVKSPKSGKETKMDVMVMENLFYGRKVSRIFDLKGSLRNRYVPTTSGADEVLLDENLVEMMWTSPIYVGSHSKRLLR 1501 (1598)
T ss_pred ---EEecCCCCceeEeeeeeehhhhhccccceeeeccchhhhccCCCCCCCceEEecHHHHhhhhcCCeeehHhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccCCcccccceeeeecCCceEEEeEEeeecccChhhHHHHHHHhhc--CCCCCCCcccChhHHHHHHHHH
Q 000300 1592 RAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCGIIDYLRQYTWDKHLETWVKSSL--VPKNVLPTVISPKDYKRRFRKF 1669 (1705)
Q Consensus 1592 ~~l~~Dt~FL~~~nvMDYSLLvGv~~~~~~l~vGIID~Lr~Yt~~KklE~~~K~~~--~~~~~~~Tvv~P~~Y~~RF~~~ 1669 (1705)
++|||||.||+++||||||||||||+++++||+||||||||||||||||+|||..+ .|+|++||||+|++|++||++|
T Consensus 1502 ~aiwNDT~FLas~~VMDYSLLVGvD~e~~ELvlGIIDfiRtYTWDKkLESWVK~sGl~gpk~~~PTVVSP~qYK~RFRkA 1581 (1598)
T KOG0230|consen 1502 RAIWNDTSFLASINVMDYSLLVGVDDENNELVLGIIDFIRTYTWDKKLESWVKSSGLGGPKNKQPTVVSPEQYKTRFRKA 1581 (1598)
T ss_pred HHHhcchHHhhhcccceeeeEEEeeCCCCeEEEEehHhhhhhhhhhhhhhheeccccccCCCCCCceeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997 4789999999999999999999
Q ss_pred HhhhcccCCCCCCCCC
Q 000300 1670 MSTHFLSVPDHWCSPE 1685 (1705)
Q Consensus 1670 m~~yf~~vpd~W~~~~ 1685 (1705)
|++||++|||+|+++|
T Consensus 1582 Md~YfL~VPD~Wtg~g 1597 (1598)
T KOG0230|consen 1582 MDTYFLMVPDQWTGLG 1597 (1598)
T ss_pred HhheeeecCCcccCCC
Confidence 9999999999999986
No 2
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=100.00 E-value=3.5e-67 Score=611.55 Aligned_cols=257 Identities=42% Similarity=0.712 Sum_probs=237.9
Q ss_pred CCCcceEEEEeCHHHHHHHHHHcCCChHHHHHHhccCCcCCCC-CCCcceeEEEecCCcEEEEecCHHHHHHHHHHHHHH
Q 000300 1385 LGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAK-GGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHY 1463 (1705)
Q Consensus 1385 ~~~~~~~~~~y~p~~F~~LR~~~gi~e~~fi~SLs~~~~~~~s-gGKSGs~F~~T~D~rFIIKtis~~E~~~f~~~lp~Y 1463 (1705)
.....|+|++|+|++|++||+.||+++++|++||+++..|..+ +|||||+||+|.|+|||||||+++|++.|+++||+|
T Consensus 52 ~~~~~f~fk~Y~P~vF~~lR~~~gi~~~dy~~Sl~~~~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y 131 (313)
T cd00139 52 HLSADFKFKDYCPEVFRALRELFGIDEADYLRSLCRSPLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNY 131 (313)
T ss_pred CCCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhcCCCCccCCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999988765 999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCC-CceeeeeeEEEEeeccccCCCCccccccCccccchhhhhccccCCCCceeEEEEEEEeccCCC-Ccc
Q 000300 1464 FKYMNESFDSGN-QTCLAKVLGIYQVSWIDCFSPFGILLFVPSCKCLIFLQVTIRQPKSGKEMRHDLMVMENLTFE-RNI 1541 (1705)
Q Consensus 1464 f~y~~~~~~~~~-~TlL~ki~Gly~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~g~~~k~~~iVMeNlf~~-~~i 1541 (1705)
|+||.+ || +|||+||||+|+|+ ++. |...+++||||+|||++ ..|
T Consensus 132 ~~~~~~----n~~~TLL~k~~Gl~~i~--------------------------~~~---~~~~~~~fvVM~Nlf~~~~~i 178 (313)
T cd00139 132 YEYITQ----NPQNTLLPKFFGLYRVK--------------------------VKS---GTGKKVDFLVMENLFYSRLKI 178 (313)
T ss_pred HHHHHh----CCCCcchhhheEEEEEE--------------------------EcC---CCCceEEEEEEecCCCCCccc
Confidence 999998 78 99999999999993 332 22347899999999998 799
Q ss_pred ceeecCCCcccccccccC--CCCCccccccchhcccCCCCeeeChHHHHHHHHHHHhhhhccccCCcccccceeeeecCC
Q 000300 1542 TRQYDLKGALHARYNTTV--DGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQR 1619 (1705)
Q Consensus 1542 ~~~yDLKGS~~~R~~~~~--~~~~~VLkD~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGv~~~~ 1619 (1705)
+++||||||+++|.+... .....||||.||++.. +.+|+|+++.|+.|++||++||+||+++||||||||||||..+
T Consensus 179 ~~~yDLKGS~~~R~~~~~~~~~~~~vlKD~df~~~~-~~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGi~~~~ 257 (313)
T cd00139 179 HRKYDLKGSTRNREASKKEKQKENPVLKDLNLLEMI-EQPLFVGEHSKKALLTQIKRDCEFLESLNIMDYSLLVGIHDIR 257 (313)
T ss_pred eEEEECCCCCCCCCcCcccccCCccccchhhhHhhc-CceEEeCHHHHHHHHHHHHHHHHHHHHCCCcccceEEEEecCC
Confidence 999999999999999774 3467899999999976 5699999999999999999999999999999999999999999
Q ss_pred ceEEEeEEeeecccChhhHHHHHHHhhcCCCCCCCcccChhHHHHHHHHHHhhhcc
Q 000300 1620 RELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDYKRRFRKFMSTHFL 1675 (1705)
Q Consensus 1620 ~~l~vGIID~Lr~Yt~~KklE~~~K~~~~~~~~~~Tvv~P~~Y~~RF~~~m~~yf~ 1675 (1705)
.+|++|||||||+|||+||+|+|+|++..+++..||||+|++|++||++||++||+
T Consensus 258 ~i~~~GIID~L~~y~~~Kk~E~~~K~~~~~~~~~iS~v~P~~Y~~RF~~fi~~~f~ 313 (313)
T cd00139 258 LVLYLGIIDILRTYTWDKKLEHWVKSLGHDGGKTPSVVSPEQYAKRFREFMDKYFL 313 (313)
T ss_pred ceEEEEEEeeeeeCCHHHHHHHHHHHhccCCCCCcceECHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999976554679999999999999999999995
No 3
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-68 Score=615.35 Aligned_cols=359 Identities=33% Similarity=0.440 Sum_probs=290.5
Q ss_pred CCceeeeccCCchhhHHhhhcCccccccccccccCCCCCCCCccccccccccccccccccccCCCCCCCCCCCccccccc
Q 000300 1267 ENYMVSDYEGELSSIIACALAVLKEMPLSTVVFNEDSGRDGDMAVKTIDSLRSLTRIPTMASSLWSVNGSSDSDSIYASL 1346 (1705)
Q Consensus 1267 ~~~vv~V~edEpSSiIA~aL~s~dy~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ss~~s~~~~~~s~~~~~~~ 1346 (1705)
.+..|+++++||||.||++|+++||+.++...+.+. .+++..-.... .+++ +..+..
T Consensus 242 s~S~~iir~~~pss~~a~~~s~~d~~~k~mr~r~se---------~~De~~l~~~~----le~g----------h~n~~~ 298 (612)
T COG5253 242 SDSDVIIREDEPSSLIAFCLSTSDYRNKMMRLRDSE---------TMDERLLNGMP----LEGG----------HRNPQE 298 (612)
T ss_pred CccccccccCCcchhhhccccchhHHHHHHhhhhhh---------cchhhhccccc----cccc----------cccchh
Confidence 466688999999999999999999998775332111 01110000000 0000 000000
Q ss_pred ccCCccccccccccccccccCCCCCCCCCceeeeccccCCCcceEEEEeCHHHHHHHHHHcCCChHHHHHHhccCCcCCC
Q 000300 1347 SISSEDSRFSSFDGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDA 1426 (1705)
Q Consensus 1347 s~~~~d~~~~~~d~~~~l~s~~~~e~~~~~v~~~~~f~~~~~~~~~~~y~p~~F~~LR~~~gi~e~~fi~SLs~~~~~~~ 1426 (1705)
+.. -+ ....+.++..+.+|.++. -++.+++|..|...|+|++|+|++|+.||++||+++. |+.++++|..|..
T Consensus 299 syn--ml-tgirvtlsr~e~iM~~~t---dth~~e~~~eg~~~~s~K~y~~e~Fr~lR~l~g~~~a-lvsl~sryil~E~ 371 (612)
T COG5253 299 SYN--ML-TGIRVTLSRIEEIMIKKT---DTHLNEQFEEGLYEFSCKDYFPEVFRELRALCGCDEA-LVSLLSRYILWES 371 (612)
T ss_pred hhh--hh-hhhHHHHHHHHHHhcCCc---CccchhhccccceeeeHHhhCHHHHHHHHHHhCCcHH-HHHHHhhhheecc
Confidence 000 00 000111233444554432 2566789999999999999999999999999999885 9999999999999
Q ss_pred CCCCcceeEEEecCCcEEEEecCHHHHHHHHHHHHHHHHHHhhhcCCCCCceeeeeeEEEEeeccccCCCCccccccCcc
Q 000300 1427 KGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVSWIDCFSPFGILLFVPSC 1506 (1705)
Q Consensus 1427 sgGKSGs~F~~T~D~rFIIKtis~~E~~~f~~~lp~Yf~y~~~~~~~~~~TlL~ki~Gly~i~~~~~~~~~~~~~~~~~~ 1506 (1705)
.|||||||||||.|.|||||||++.|+..|..++-.|+.|+.. ||.|+||||||+|+|.
T Consensus 372 ~~GKSGSff~~trD~kfIiKti~hsE~~~~r~~~~eY~~~V~~----np~T~l~ki~G~yrv~----------------- 430 (612)
T COG5253 372 NGGKSGSFFLFTRDYKFIIKTISHSEHICFRPMIFEYYVHVLF----NPLTLLCKIFGFYRVK----------------- 430 (612)
T ss_pred CCCcccceEEEeccchhhhhhhhhhhHHHHHHHHHHHHHHHHc----CchHHHHHHhceeEEe-----------------
Confidence 9999999999999999999999999996666666666666555 7899999999999993
Q ss_pred ccchhhhhcccc-CCCCceeEEEEEEEeccCCCCccceeecCCCcccccccccCCCCCccccccchhcccCCCCeeeChH
Q 000300 1507 KCLIFLQVTIRQ-PKSGKEMRHDLMVMENLTFERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNT 1585 (1705)
Q Consensus 1507 ~~~~~~~~~ik~-~~~g~~~k~~~iVMeNlf~~~~i~~~yDLKGS~~~R~~~~~~~~~~VLkD~nf~~~~~~~pi~l~~~ 1585 (1705)
++. ...++..|+||||||||||++.|+++|||||||+||++..++....||+|+|.++.++++|+++...
T Consensus 431 ---------~~~s~~~~k~~K~~fiVMeNlf~~~~i~~ifDLKGS~~Nr~ve~~gk~~s~l~~mndv~wI~es~~~~~g~ 501 (612)
T COG5253 431 ---------SRSSISSSKSRKIYFIVMENLFYPHGIHRIFDLKGSMRNRHVERTGKSMSVLLDMNDVEWIRESPKIVFGL 501 (612)
T ss_pred ---------ccccccccccceeEEEEecccCCCCCcceEEeccCchhhhhhhhhccccchhccchhHHHHHhCchhhhhH
Confidence 333 2346778999999999999999999999999999999999999999999998888888899999889
Q ss_pred HHHHHHHHHHhhhhccccCCcccccceeeeecCCceEEEe-EEeeecc-cChhhHHHHHHHhhcC-C---CCCCCcccCh
Q 000300 1586 AKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQRRELVCG-IIDYLRQ-YTWDKHLETWVKSSLV-P---KNVLPTVISP 1659 (1705)
Q Consensus 1586 ~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGv~~~~~~l~vG-IID~Lr~-Yt~~KklE~~~K~~~~-~---~~~~~Tvv~P 1659 (1705)
.|+.|+.|||+|+.||+++||||||||||||..+.+..|| |||++|+ |||||++|.|+|..+. + +...||+|+|
T Consensus 502 ~Kk~~~sqv~~Dv~fLsklniMDYSllVgi~~~~~~~~V~~I~d~i~t~~t~Dk~~~~gI~d~lt~~s~~k~~~~t~v~p 581 (612)
T COG5253 502 KKKLLLSQVWNDVLFLSKLNIMDYSLLVGIDDEREEASVGLIIDFIRTRMTGDKKLESGIKDKLTVGSFTKRKEPTAVTP 581 (612)
T ss_pred HHHHHHHHHHHHHHHHHHhCccceeEEEEeccchhhcchHHHHhhhccccccceeeeeehhhhhccceeeecccceecCH
Confidence 9999999999999999999999999999999999999999 9999999 9999999999999983 2 4468999999
Q ss_pred hHHHHHHHHHHhhhcccCCCCCCCCC
Q 000300 1660 KDYKRRFRKFMSTHFLSVPDHWCSPE 1685 (1705)
Q Consensus 1660 ~~Y~~RF~~~m~~yf~~vpd~W~~~~ 1685 (1705)
.+|++||++||+.|+.++|+.|++.+
T Consensus 582 ~~y~nrf~~~~e~yi~~~p~~~~~~~ 607 (612)
T COG5253 582 RQYKNRFRKAMEAYIDPFPDKKTQEG 607 (612)
T ss_pred HHHHHHHHHhHHHhhhcccchhhhcc
Confidence 99999999999999999999999875
No 4
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=100.00 E-value=8.3e-66 Score=606.95 Aligned_cols=259 Identities=38% Similarity=0.623 Sum_probs=237.5
Q ss_pred ccccCCCcceEEEEeCHHHHHHHHHHcCCChHHHHHHhccCCc-CCCCCCCcceeEEEecCCcEEEEecCHHHHHHHHHH
Q 000300 1381 ISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRN-WDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKF 1459 (1705)
Q Consensus 1381 ~~f~~~~~~~~~~~y~p~~F~~LR~~~gi~e~~fi~SLs~~~~-~~~sgGKSGs~F~~T~D~rFIIKtis~~E~~~f~~~ 1459 (1705)
.+++.....|+|++|+|++|++||+.||+++++|++||++|.. |..+||||||+||+|.|+|||||||++.|++.|+++
T Consensus 21 ~~~~~~~~~~~~~~Y~P~~F~~lR~~~~i~~~~y~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiiKti~~~E~~~l~~~ 100 (342)
T smart00330 21 LTPSHGSADFKFKDYCPEVFRNLRELFGIDPADYLRSLCRSPPLELSSGGKSGSFFYLSLDDRFIIKTVSKSEIKSLLPM 100 (342)
T ss_pred ccCCCCCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhCCCCccccCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHH
Confidence 3466778999999999999999999999999999999999986 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCceeeeeeEEEEeeccccCCCCccccccCccccchhhhhccccCCCCceeEEEEEEEeccCC-C
Q 000300 1460 ALHYFKYMNESFDSGNQTCLAKVLGIYQVSWIDCFSPFGILLFVPSCKCLIFLQVTIRQPKSGKEMRHDLMVMENLTF-E 1538 (1705)
Q Consensus 1460 lp~Yf~y~~~~~~~~~~TlL~ki~Gly~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~g~~~k~~~iVMeNlf~-~ 1538 (1705)
||.||+||.+ ||+|||+||||+|+|+ ++ +|+..+++||||+|||+ +
T Consensus 101 lp~Y~~~~~~----n~~SlL~ki~Gly~i~--------------------------~~---~~~~~~~~fiVM~NlF~~~ 147 (342)
T smart00330 101 LPNYYEHIVQ----NPNTLLPKFFGLYRVK--------------------------VK---GGTEKKIYFLVMENLFYSD 147 (342)
T ss_pred HHHHHHHHHh----CCCcchhhhcEEEEEE--------------------------EC---CCcceeEEEEEEecCCCCC
Confidence 9999999998 8999999999999993 22 33346789999999999 6
Q ss_pred CccceeecCCCccccccccc-CCCCCccccccchhcccCCCCeeeChHHHHHHHHHHHhhhhccccCCcccccceeeeec
Q 000300 1539 RNITRQYDLKGALHARYNTT-VDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDS 1617 (1705)
Q Consensus 1539 ~~i~~~yDLKGS~~~R~~~~-~~~~~~VLkD~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGv~~ 1617 (1705)
..|+++||||||+++|.+.. ......||||.||++. +..+|+|+++.|..|++||++||.||+++|||||||||||+.
T Consensus 148 ~~i~~~yDLKGS~~~R~~~~~~~~~~~vlkD~df~~~-~~~~i~l~~~~k~~l~~ql~~D~~FL~~~~imDYSLLvGi~~ 226 (342)
T smart00330 148 LKVHRKYDLKGSTRGREADKKKVKELPVLKDLDLVEM-WNQPIYVDPLAKKALLKQIKRDCEFLESLKIMDYSLLVGIHD 226 (342)
T ss_pred CceeEEEECCCCCCCCCcCccccCCCCcccccchhhc-cCCeEEECHHHHHHHHHHHHHHHHHHHHccchhhhhhhcccc
Confidence 89999999999999999875 3346789999999987 567999999999999999999999999999999999999986
Q ss_pred CCc------------------------------------------------------------eEEEeEEeeecccChhh
Q 000300 1618 QRR------------------------------------------------------------ELVCGIIDYLRQYTWDK 1637 (1705)
Q Consensus 1618 ~~~------------------------------------------------------------~l~vGIID~Lr~Yt~~K 1637 (1705)
.+. +|+||||||||+|||+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vy~iGIID~Lq~Y~~~K 306 (342)
T smart00330 227 IERGQREEIELPPVYGSDESPSSESSNGGKAPDITGNLLVSNSPDGDGPFGGIPARAIRARRVVLYLGIIDILQTYTWDK 306 (342)
T ss_pred ccccchhcccccccccccccccccccccCCCccccccccccccccccccccccccccccCCceEEEEEEEEEEEeCCHhH
Confidence 432 79999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcccChhHHHHHHHHHHhhhc
Q 000300 1638 HLETWVKSSLVPKNVLPTVISPKDYKRRFRKFMSTHF 1674 (1705)
Q Consensus 1638 klE~~~K~~~~~~~~~~Tvv~P~~Y~~RF~~~m~~yf 1674 (1705)
|+|||+|++..+ +..||||+|++|++||++||++||
T Consensus 307 klE~~~K~~~~~-~~~iS~V~P~~Y~~RF~~fi~~~F 342 (342)
T smart00330 307 KLEHWVKSIGHD-GKTISVVHPEQYAKRFRDFMDKYF 342 (342)
T ss_pred HHHHHHHHhccC-CCCcceECHHHHHHHHHHHHHhhC
Confidence 999999998754 457999999999999999999998
No 5
>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=6.5e-58 Score=533.31 Aligned_cols=252 Identities=35% Similarity=0.520 Sum_probs=227.1
Q ss_pred CcceEEEEeCHHHHHHHHHHcCCChHHHHHHhccCCcCC--CCCCCcceeEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Q 000300 1387 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWD--AKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYF 1464 (1705)
Q Consensus 1387 ~~~~~~~~y~p~~F~~LR~~~gi~e~~fi~SLs~~~~~~--~sgGKSGs~F~~T~D~rFIIKtis~~E~~~f~~~lp~Yf 1464 (1705)
...|++++|||.+||.||++|||++.||+.||++..... +++|||||+||.|.|+|||||||.++|++.++++||.||
T Consensus 95 ~~~Fk~KdYcP~vFR~lRelFgId~~DYl~Slc~~~~l~e~sspGksGS~Fy~S~DdrFiIKTv~~~E~~~l~~mLp~Yy 174 (420)
T KOG0229|consen 95 SSDFKFKDYCPMVFRNLRELFGIDPADYLLSLCGNPPLRELSSPGKSGSFFYLSYDDRFIIKTVRKSEVKVLLKMLPGYY 174 (420)
T ss_pred ccccchhhcChHHHHHHHHHhCCChHHHHHHHhcchhhhhccCCCCccceEEEecCceEEEEeccHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999987665 677999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCceeeeeeEEEEeeccccCCCCccccccCccccchhhhhccccCCCCceeEEEEEEEeccCCCC-ccce
Q 000300 1465 KYMNESFDSGNQTCLAKVLGIYQVSWIDCFSPFGILLFVPSCKCLIFLQVTIRQPKSGKEMRHDLMVMENLTFER-NITR 1543 (1705)
Q Consensus 1465 ~y~~~~~~~~~~TlL~ki~Gly~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~g~~~k~~~iVMeNlf~~~-~i~~ 1543 (1705)
+|+.+. ++.|||+||||+|+|+ . .+|+ +++||||+|||..+ .|++
T Consensus 175 ~~v~~~---~~~TLl~kf~Gly~vk--------------------------~---~gg~--k~yfvVM~Nlf~~~~~iH~ 220 (420)
T KOG0229|consen 175 QHVVEQ---NNRTLLPKFFGLYRVK--------------------------P---DGGK--KIYFVVMNNLFPSRLKVHR 220 (420)
T ss_pred HHHHcc---CCceeehhhceeEEEe--------------------------e---CCCc--eEEEEEecccCCCccceeE
Confidence 999984 6669999999999993 2 3554 67999999999985 9999
Q ss_pred eecCCCcccccccccCC--CCCccccccchhcccCCCCeeeChHHHHHHHHHHHhhhhccccCCcccccceeeeecC---
Q 000300 1544 QYDLKGALHARYNTTVD--GSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQ--- 1618 (1705)
Q Consensus 1544 ~yDLKGS~~~R~~~~~~--~~~~VLkD~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGv~~~--- 1618 (1705)
+||||||+++|.++..+ ++..+|||.||++.. ..|+|++..|+.|+.||++||+||++++|||||||||||..
T Consensus 221 kyDLKGSt~~R~askke~~k~~pTlKDlDf~~~~--~~~~l~~~~~~~l~~ql~~Dce~Le~~~IMDYSLLvGiH~~~~~ 298 (420)
T KOG0229|consen 221 KYDLKGSTVGREASKKEKIKELPTLKDLDFLNEG--QKLYLGKEAKKALLKQLKRDCEFLESLKIMDYSLLVGIHDRDRG 298 (420)
T ss_pred EeecCCCcccccccchhhccCCCccccchhhccC--ceEecCHHHHHHHHHHHHHHHHHHHHhcchhhhheeeeeecccc
Confidence 99999999999997643 467899999999843 47999999999999999999999999999999999999731
Q ss_pred ------------------------------------------------------------------CceEEEeEEeeecc
Q 000300 1619 ------------------------------------------------------------------RRELVCGIIDYLRQ 1632 (1705)
Q Consensus 1619 ------------------------------------------------------------------~~~l~vGIID~Lr~ 1632 (1705)
+.+||+||||+||.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~y~GIIDILq~ 378 (420)
T KOG0229|consen 299 QAEKEELEPQEDESEREQRLSSASPEDVLTSTASPSIQLGANMPARAGEERVDRMEYAPAQNSGGYDVVLYIGIIDILQD 378 (420)
T ss_pred ccchhhcCCCCCccccccccccccccccCCCCCcccccCCCCCCCccccccccccccccccccCcceEEEEEEeehhhhh
Confidence 12489999999999
Q ss_pred cChhhHHHHHHHhhcCCCCCCCcccChhHHHHHHHHHHhhhcc
Q 000300 1633 YTWDKHLETWVKSSLVPKNVLPTVISPKDYKRRFRKFMSTHFL 1675 (1705)
Q Consensus 1633 Yt~~KklE~~~K~~~~~~~~~~Tvv~P~~Y~~RF~~~m~~yf~ 1675 (1705)
|+..||+||++|++..+. ..+++|+|++|++||++||.+.|.
T Consensus 379 Y~~~KK~EH~~Ksl~~d~-~tIS~v~P~~Ys~RF~dFi~~~~~ 420 (420)
T KOG0229|consen 379 YDIKKKLEHAYKSLQHDP-DTISAVDPKFYAKRFLDFISNIFF 420 (420)
T ss_pred cchhhHHHHHHhhhccCC-ceeeccCHHHHHHHHHHHHHhhcC
Confidence 999999999999986443 468999999999999999999873
No 6
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=100.00 E-value=4.9e-56 Score=507.34 Aligned_cols=222 Identities=36% Similarity=0.584 Sum_probs=156.0
Q ss_pred HhccC--CcCCCCCCCcceeEEEecCCcEEEEecCHHHHHHHHHHHHHHHHHHhhhcCCCCCceeeeeeEEEEeeccccC
Q 000300 1417 SLSRC--RNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVSWIDCF 1494 (1705)
Q Consensus 1417 SLs~~--~~~~~sgGKSGs~F~~T~D~rFIIKtis~~E~~~f~~~lp~Yf~y~~~~~~~~~~TlL~ki~Gly~i~~~~~~ 1494 (1705)
|||.+ ..|.+++|||||+||+|.|+|||||||+++|++.|+++||+||+||.+ ||+|||+||||+|+|.
T Consensus 2 sl~~~~~~~~~~s~GKSGs~F~~T~D~kfiiKti~~~E~~~l~~~lp~Y~~~~~~----~~~SlL~r~~Gl~~i~----- 72 (252)
T PF01504_consen 2 SLCNLSSLSEKSSGGKSGSFFFFTSDGKFIIKTISKSEFKFLLKILPAYFEHMSE----NPNSLLPRFYGLYSIK----- 72 (252)
T ss_dssp ---------ES---SSSSS-EEE-TTSSEEEEEE-HHHHHHHHHHHHHHHHHHHH----TTTSSS--EEEEEEE------
T ss_pred CccccccccccCCCCCccCEEEEeCCCCEEEEeCCHHHHHHHHHHHHHHHHHHHh----CcCchHHHHHHHheec-----
Confidence 66543 567899999999999999999999999999999999999999999999 7999999999999992
Q ss_pred CCCccccccCccccchhhhhccccCCCCceeEEEEEEEeccCCC-CccceeecCCCcccccccccC--CCCCccccccch
Q 000300 1495 SPFGILLFVPSCKCLIFLQVTIRQPKSGKEMRHDLMVMENLTFE-RNITRQYDLKGALHARYNTTV--DGSGDVLLDQNF 1571 (1705)
Q Consensus 1495 ~~~~~~~~~~~~~~~~~~~~~ik~~~~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~VLkD~nf 1571 (1705)
. .+| ..+.+||||+|+|++ ..|+++||||||+++|.+... .....||||.||
T Consensus 73 ---------------------~---~~~-~~~~~fvVM~N~f~~~~~i~~~yDLKGs~~~R~~~~~~~~~~~~~lkD~df 127 (252)
T PF01504_consen 73 ---------------------K---SNG-KEKIYFVVMENLFYTPRNIHERYDLKGSTVGRKAKKKDREQTEPVLKDLDF 127 (252)
T ss_dssp ---------------------E---ETT--EEEEEEEEE-SS-SSS--SEEEEE--SSSSS-S-CHHHCSSS-EEEHHHH
T ss_pred ---------------------c---cCC-ceeEEEEEECCCccCCcccceEEecCCcccCCCCCccccccccceeecccc
Confidence 1 124 357899999999998 799999999999999998752 235789999999
Q ss_pred hcccCCCCeeeChHHHHHHHHHHHhhhhccccCCcccccceeeee------------------------cCCceEEEeEE
Q 000300 1572 VNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVD------------------------SQRRELVCGII 1627 (1705)
Q Consensus 1572 ~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGv~------------------------~~~~~l~vGII 1627 (1705)
.+.. .+|+|+++.++.|++||++||+||+++|||||||||||+ ..+.+|++|||
T Consensus 128 ~~~~--~~i~l~~~~~~~l~~ql~~D~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~s~~~~~vy~~GII 205 (252)
T PF01504_consen 128 IESK--RKIHLGPEQKEELLKQLERDTEFLSSHNIMDYSLLVGIHNRDSNEEQENKSSFPSYAGGIMSEDGNEVYYLGII 205 (252)
T ss_dssp HHTT----SBS-SCHHHHHHHHHHHHHHHHHHTTEES-EEEEEEEH---HHHHHH-H---TTTTTTCCCETTEEEEEEEE
T ss_pred cccC--cEEEeChHHHHHHHHHHHHHHHHHHhccccccceeEeeeeccccccccccccccccccceeecCCCeEEEEEEe
Confidence 9864 589999999999999999999999999999999999999 45688999999
Q ss_pred eeecccChhhHHHHHHHhhcCCCCCCCcccChhHHHHHHHHHHhhhc
Q 000300 1628 DYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDYKRRFRKFMSTHF 1674 (1705)
Q Consensus 1628 D~Lr~Yt~~KklE~~~K~~~~~~~~~~Tvv~P~~Y~~RF~~~m~~yf 1674 (1705)
||||+|||.|++|+|+|+++..++..+|||+|++|++||++||++||
T Consensus 206 D~L~~y~~~K~~E~~~K~~~~~~~~~iS~v~P~~Y~~RF~~~i~~~f 252 (252)
T PF01504_consen 206 DILQEYNWKKKLEHFFKSLIKCDGQDISCVPPEEYAERFIKFIESIF 252 (252)
T ss_dssp -S-EETT------------------SSS---HHHHHHHHHHHHHHH-
T ss_pred hheeeccHHHHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHhC
Confidence 99999999999999999995333567999999999999999999998
No 7
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=9.4e-55 Score=547.08 Aligned_cols=248 Identities=28% Similarity=0.433 Sum_probs=221.3
Q ss_pred CcceEEEEeCHHHHHHHHHHcCCChHHHHHHhccCCcC--CCCCCCcceeEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Q 000300 1387 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNW--DAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYF 1464 (1705)
Q Consensus 1387 ~~~~~~~~y~p~~F~~LR~~~gi~e~~fi~SLs~~~~~--~~sgGKSGs~F~~T~D~rFIIKtis~~E~~~f~~~lp~Yf 1464 (1705)
...|+|++|+|.+|+.||++|||++++|+.||+.+..| .+++|||||+||+|.|+|||||||+++|++.|++|||+||
T Consensus 401 ~~~fkfkdY~P~vFr~LR~~fgId~~dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiIKTI~k~E~~~l~~iLp~Y~ 480 (765)
T PLN03185 401 SEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEVKVLLRMLPDYH 480 (765)
T ss_pred cCceEEEEECHHHHHHHHHHhCCCHHHHHHhccCCccchhccCCCCcCCeEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999876544 4789999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCceeeeeeEEEEeeccccCCCCccccccCccccchhhhhccccCCCCceeEEEEEEEeccCCC-Cccce
Q 000300 1465 KYMNESFDSGNQTCLAKVLGIYQVSWIDCFSPFGILLFVPSCKCLIFLQVTIRQPKSGKEMRHDLMVMENLTFE-RNITR 1543 (1705)
Q Consensus 1465 ~y~~~~~~~~~~TlL~ki~Gly~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~g~~~k~~~iVMeNlf~~-~~i~~ 1543 (1705)
+||.. ||+|||+||||+|+|+ + .+|+ +++||||+|||+. ..|++
T Consensus 481 ~hv~~----n~~TLL~kf~Gl~~i~--------------------------~---~~g~--k~~fvVM~NlF~~~~~I~~ 525 (765)
T PLN03185 481 HHVKT----YENTLITKFFGLHRIK--------------------------P---SSGQ--KFRFVVMGNMFCTELRIHR 525 (765)
T ss_pred HHHhh----CCCcchhhheEEEEEE--------------------------e---CCCc--EEEEEEEecCCCCCCccce
Confidence 99987 8999999999999993 2 2343 6799999999997 58999
Q ss_pred eecCCCcccccccccCC-CCCccccccchhcccCCCCeeeChHHHHHHHHHHHhhhhccccCCcccccceeeeecCC---
Q 000300 1544 QYDLKGALHARYNTTVD-GSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQR--- 1619 (1705)
Q Consensus 1544 ~yDLKGS~~~R~~~~~~-~~~~VLkD~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGv~~~~--- 1619 (1705)
+||||||+++|.+...+ ..+.||||.||.. +|+|+++.|+.|++||++||+||+++||||||||||||...
T Consensus 526 ~yDLKGSt~~R~~~k~~~~~~~tlKDlD~~~-----~~~l~~~~k~~l~~qL~~D~~FL~~~~IMDYSLLvGIh~~~~~~ 600 (765)
T PLN03185 526 RFDLKGSSLGRSADKVEIDENTTLKDLDLNY-----SFYLEPSWRDALLRQIEIDSKFLEAQRIMDYSLLLGVHFRAPQH 600 (765)
T ss_pred EEECCCCCCCCCCccccccCCCeeeecCcCc-----eEeeCHHHHHHHHHHHHHHHHHHhHCcCeecceEEEEEecChhh
Confidence 99999999999985432 3567899999843 69999999999999999999999999999999999998310
Q ss_pred --------------------------------------------------------------------------------
Q 000300 1620 -------------------------------------------------------------------------------- 1619 (1705)
Q Consensus 1620 -------------------------------------------------------------------------------- 1619 (1705)
T Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (765)
T PLN03185 601 LRSLLPYSRSITADGLEVVAEEDTIEDEELSYPEGLVLVPRGADDGSTVPGPHIRGSRLRASAAGDEEVDLLLPGTARLQ 680 (765)
T ss_pred hcccccccccccccccccccccccccccccccccccccccccccccccCCCcccccccccccccCchhhhhccccccccc
Confidence
Q ss_pred ------------------------------ceEEEeEEeeecccChhhHHHHHHHhhcCCCCCCCcccChhHHHHHHHHH
Q 000300 1620 ------------------------------RELVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKDYKRRFRKF 1669 (1705)
Q Consensus 1620 ------------------------------~~l~vGIID~Lr~Yt~~KklE~~~K~~~~~~~~~~Tvv~P~~Y~~RF~~~ 1669 (1705)
-+||+|||||||.|+..|||||++|++.... ..+++|+|+.|++||++|
T Consensus 681 ~~~g~~mpara~~~~~~~~~~~~~~~e~~d~~~~~giidilq~y~~~k~~eh~~k~~~~~~-~~is~v~p~~y~~rf~~f 759 (765)
T PLN03185 681 IQLGVNMPARAERIPGREDKEKQSFHEVYDVVLYLGIIDILQEYNMSKKIEHAYKSLQFDS-LSISAVDPTFYSKRFLEF 759 (765)
T ss_pred hhhcccCchhhhcccccccccccccCcccceEEEEEEEEeecccchhHHHHHHHhhhccCC-CceeccChHHHHHHHHHH
Confidence 1378999999999999999999999986433 468899999999999999
Q ss_pred Hhhhcc
Q 000300 1670 MSTHFL 1675 (1705)
Q Consensus 1670 m~~yf~ 1675 (1705)
|.+.|+
T Consensus 760 ~~~~f~ 765 (765)
T PLN03185 760 IQKVFP 765 (765)
T ss_pred HHhhcC
Confidence 999984
No 8
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=2.4e-47 Score=438.34 Aligned_cols=255 Identities=49% Similarity=0.828 Sum_probs=237.3
Q ss_pred HHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCC
Q 000300 268 AIVSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAH 347 (1705)
Q Consensus 268 ~ll~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvah 347 (1705)
+++.|||.++++. ....|.+.|++|+++|+..+.++...++.+|+.+||+|+|++||++.||++|+|+||+|+++|
T Consensus 2 ~~~~~~~~~~~~~----~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~ 77 (261)
T cd03334 2 ALLAQLLKDEGIS----NDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAH 77 (261)
T ss_pred hHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCC
Confidence 6789999999993 467899999999999999997654334579997789999999999999999999999999999
Q ss_pred CCCCccccCCcEEEEeeecccCccc--CCcHHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCCeEec
Q 000300 348 KHMPTEYKNPRLLLIRGVLGLSSSG--LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVF 424 (1705)
Q Consensus 348 k~M~~~i~NPRILLL~~~LEy~r~e--lsSle~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~ 424 (1705)
++||++++||||+||+|+|||++++ +.+++. +++|++|++++|++|+++|||||||+|+|+++|++||.++||++++
T Consensus 78 ~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~ 157 (261)
T cd03334 78 KRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVL 157 (261)
T ss_pred ccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999876 778999 9999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCceecccc--CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCC
Q 000300 425 DMKLHRLERVARCTGSPILSSGS--LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSN 502 (1705)
Q Consensus 425 nVK~~~LeRIAR~TGA~IvsSid--L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTILLRG~s 502 (1705)
+|++.+|+|||+||||+|+++++ ++++.||+|+.|++++++.+ .+++++|+||+||+.+.+|||+|||++
T Consensus 158 ~v~~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~--------~~~~~~~~~~~~~~~~~~~TIlLRG~t 229 (261)
T cd03334 158 NVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEE--------HGRSKTLMFFEGCPKELGCTILLRGGD 229 (261)
T ss_pred ecCHHHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCc--------CCCceeEEEEecCCCCceeEEEEECCC
Confidence 99999999999999999999954 88899999999999998642 124589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCeEeecCC
Q 000300 503 SDELKRIKSVVQCAVVMAYHLILETSFLVDQR 534 (1705)
Q Consensus 503 ~~~L~evKrvl~dav~vvy~l~lE~sfl~ggG 534 (1705)
.++|+++||+++||++++||+++|.++++|.|
T Consensus 230 ~~~lde~eR~i~Dal~v~~~~~le~~~~~~~~ 261 (261)
T cd03334 230 LEELKKVKRVVEFMVFAAYHLKLETSFLADEF 261 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC
Confidence 99999999999999999999999999998864
No 9
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-40 Score=417.74 Aligned_cols=256 Identities=24% Similarity=0.425 Sum_probs=240.4
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCC-CCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVD-GKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~-gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
..|++.+.+++++|....|.+.|++|+++|+..+.++... +..+|+++||+|+|++||++.||++|+|++|+|+++|++
T Consensus 145 ~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~ 224 (525)
T TIGR02344 145 AAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPK 224 (525)
T ss_pred HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCC
Confidence 3477888889999999999999999999999999876422 347899889999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCccc------C---CcHHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcC
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1705)
Q Consensus 350 M~~~i~NPRILLL~~~LEy~r~e------l---sSle~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~g 419 (1705)
|+++++||||+|++++|+|++++ + .++++ +++|++|++++|++|++.||+||+++++|+++|+++|.++|
T Consensus 225 m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~ 304 (525)
T TIGR02344 225 MRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKAN 304 (525)
T ss_pred CccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC
Confidence 99999999999999999999876 2 35777 89999999999999999999999999999999999999999
Q ss_pred CeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccc-cceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEE
Q 000300 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKH-CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVL 497 (1705)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~-C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTIL 497 (1705)
|++++++++.+|+|||++|||+++++++ +.+..||+ |+.|++++++. ++|+||+||..+.+|||+
T Consensus 305 I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~-------------~~~~~~~g~~~~~~~TIl 371 (525)
T TIGR02344 305 ISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGD-------------EYFTFFTECKDPKACTIL 371 (525)
T ss_pred ceEEecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECC-------------eEEEEEEcCCCCCEEEEE
Confidence 9999999999999999999999999999 99899999 99999999743 799999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 498 LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 498 LRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
|||++..+|+|+||+++||+++++++++++.+|+||||++..
T Consensus 372 LrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ 413 (525)
T TIGR02344 372 LRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMA 413 (525)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHH
Confidence 999999999999999999999999999999999999999875
No 10
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=3.6e-38 Score=394.82 Aligned_cols=255 Identities=25% Similarity=0.375 Sum_probs=237.8
Q ss_pred HHHHHhhcccCCCCCc-hhHHHHHHHHHHHHhhcccCCCCCCC-ccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCC
Q 000300 271 SQLLKSVGVVSSGKDG-ESWVDIVTSLSWEAASSLRPGSVDGK-SLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK 348 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~-~~W~~~ls~L~~eAv~~V~pd~~~gd-~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk 348 (1705)
..|++.+.+++++|.. ..|.+.|++|+++|+..+.+...+|. .+|+ ++|+|+|++||++.||++++|++|++++.|+
T Consensus 145 ~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~ 223 (519)
T TIGR02339 145 DLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDL-DNIKIEKKTGGSIDDTELVEGIVVDKEPVHP 223 (519)
T ss_pred HHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCH-HHeEEEEccCcChhcceeEeeEEEecCCCCC
Confidence 5688899999999988 79999999999999999975322232 5788 4899999999999999999999999999999
Q ss_pred CCCccccCCcEEEEeeecccCccc------CCc---HHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHc
Q 000300 349 HMPTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 418 (1705)
Q Consensus 349 ~M~~~i~NPRILLL~~~LEy~r~e------lsS---le~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~ 418 (1705)
+|+++++||||+|++|+|||++++ +.+ +.+ +++|++|++++|++|+..||+|||++++|++.|++||.++
T Consensus 224 ~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~ 303 (519)
T TIGR02339 224 GMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA 303 (519)
T ss_pred CCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC
Confidence 999999999999999999999887 333 667 8999999999999999999999999999999999999999
Q ss_pred CCeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEE
Q 000300 419 GMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVL 497 (1705)
Q Consensus 419 gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTIL 497 (1705)
||++++++++.+|+|||++|||+++++++ +.+..||+|+.|++++++. ++|++|+||..+.+|||+
T Consensus 304 gI~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~ 370 (519)
T TIGR02339 304 GILAVRRVKKSDIEKLARATGAKIVSSIKEITESDLGYAGLVEERKVGD-------------DKMTFVEGCKNPKAVTIL 370 (519)
T ss_pred CCEEEecCCHHHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCCEEEEE
Confidence 99999999999999999999999999999 9888999999999999853 689999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 498 LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 498 LRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
|||++..+|+|+||+++||++++++++.++++|+||||++..
T Consensus 371 lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ 412 (519)
T TIGR02339 371 LRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIE 412 (519)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHH
Confidence 999999999999999999999999999999999999999875
No 11
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-39 Score=373.15 Aligned_cols=254 Identities=23% Similarity=0.435 Sum_probs=240.8
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~M 350 (1705)
.+++...+.+..+|....|.+.++.|+++|+..|..+ .|..+|+..|+||.|||||.+.+|++++||.+.|.+.|.+|
T Consensus 148 ~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~--~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkm 225 (527)
T KOG0364|consen 148 AKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVE--NGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKM 225 (527)
T ss_pred HHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhc--cCceechhhhccccccCcccccccceecceeeccccCcHHH
Confidence 4577788888899999999999999999999999876 45579999999999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccc---------CCcHHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCC
Q 000300 351 PTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 420 (1705)
Q Consensus 351 ~~~i~NPRILLL~~~LEy~r~e---------lsSle~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gI 420 (1705)
.+.|+||||.||+|||||.+-+ -.++.. ++-|+||++.++.+|+.++||||++||+||++|++||.++||
T Consensus 226 rr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~i 305 (527)
T KOG0364|consen 226 RRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANI 305 (527)
T ss_pred HHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCc
Confidence 9999999999999999998865 245777 999999999999999999999999999999999999999999
Q ss_pred eEeccCCHHHHHHHHHHhCCceecccc-CCCCCcc-ccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000300 421 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLK-HCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498 (1705)
Q Consensus 421 tvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG-~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTILL 498 (1705)
++++++++.+..||||++||.|++..+ |.+...| .|+.|+++++++ ..|.||..|..|+.|||||
T Consensus 306 T~~rr~rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gd-------------eyf~f~~~Ck~pkaCtill 372 (527)
T KOG0364|consen 306 TAIRRLRKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGD-------------EYFTFFTDCKEPKACTILL 372 (527)
T ss_pred hhhhhhhccccchhhhhcCceeccChhhCchhccCcccceeeeeccCc-------------hhhhhhhhcCCCcceEEEe
Confidence 999999999999999999999999999 9999999 599999999865 5899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 499 RG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
||++.++|.|++|.+++|+.+++|...++++++||||+++-
T Consensus 373 rg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMA 413 (527)
T KOG0364|consen 373 RGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMA 413 (527)
T ss_pred ccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHH
Confidence 99999999999999999999999999999999999999984
No 12
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.9e-37 Score=388.34 Aligned_cols=255 Identities=24% Similarity=0.370 Sum_probs=238.2
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~M 350 (1705)
..|++.+.+++++|....|.+.|++|+++|+..+.++......+|+ ++|+|+|++||+++||++++|+||++++.|+.|
T Consensus 144 ~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m 222 (517)
T cd03343 144 DTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDL-DNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGM 222 (517)
T ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccH-HHeeEEeecCcCHHHcceeeeEEEeccCCCCCC
Confidence 4588888999999999999999999999999999754222236888 599999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccc------CCc---HHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCC
Q 000300 351 PTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 420 (1705)
Q Consensus 351 ~~~i~NPRILLL~~~LEy~r~e------lsS---le~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gI 420 (1705)
++.++||||+|++++|||.+.+ +.+ +++ +++|++|++++|++|+..|++|||++++|++.|++||.++||
T Consensus 223 ~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI 302 (517)
T cd03343 223 PKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGI 302 (517)
T ss_pred ccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCc
Confidence 9999999999999999999886 344 667 899999999999999999999999999999999999999999
Q ss_pred eEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEe
Q 000300 421 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLK 499 (1705)
Q Consensus 421 tvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTILLR 499 (1705)
++++++++.+|+|||++|||+++++++ ++...||+|+.|++++++. ++|++|+||..+.+|||+||
T Consensus 303 ~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lr 369 (517)
T cd03343 303 LAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGD-------------DKMVFVEGCKNPKAVTILLR 369 (517)
T ss_pred EEEEeCCHHHHHHHHHHhCCEEecchhhCChhhCCccceEEEEEECC-------------eEEEEEEcCCCCceEEEEEE
Confidence 999999999999999999999999999 9989999999999999753 68999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 500 GSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 500 G~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
|++..+|+|+||+++||++++++++.++++++|||+++..
T Consensus 370 G~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ 409 (517)
T cd03343 370 GGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIE 409 (517)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHH
Confidence 9999999999999999999999999999999999999875
No 13
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.1e-37 Score=386.89 Aligned_cols=256 Identities=19% Similarity=0.299 Sum_probs=237.2
Q ss_pred HHHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000300 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 270 l~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
...|++.+.+++++|....|.+.|+.++++|+..+... .+..+|+ ++|+|+|++||++.||++++|++|+++++|+.
T Consensus 153 ~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~ 229 (526)
T cd03339 153 KEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADL--ERKDVNF-ELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQ 229 (526)
T ss_pred HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhc--CCCccch-HHeEEEEecCcCHHHcceeeeEEEecccCCCC
Confidence 34688899999999999999999999999999988642 1234677 58999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCccc------CC---cHHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcC
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1705)
Q Consensus 350 M~~~i~NPRILLL~~~LEy~r~e------ls---Sle~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~g 419 (1705)
|++.++||||+|+.++|||.+.+ +. +++. +++|++|++.++++|++.|++||+++++|++.|++||.++|
T Consensus 230 m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~ 309 (526)
T cd03339 230 MPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG 309 (526)
T ss_pred CCceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC
Confidence 99999999999999999998765 33 3566 89999999999999999999999999999999999999999
Q ss_pred CeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000300 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498 (1705)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTILL 498 (1705)
|+++++++..+|+|||++|||+++++++ ++..+||+|+.|+++.|+. ..++|+||+||+.+.+|||+|
T Consensus 310 I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~-----------~~~~~~~i~g~~~~~~~TIll 378 (526)
T cd03339 310 LPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGT-----------TKDKMLVIEGCPNSKAVTIFI 378 (526)
T ss_pred CEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhcccCceEEEEEecC-----------CCcEEEEEECCCCCCEEEEEE
Confidence 9999999999999999999999999999 9999999999999999853 247999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 499 RG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
||+|..+|+|+||+++||++++++++.++++|+||||++..
T Consensus 379 rG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ 419 (526)
T cd03339 379 RGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEIS 419 (526)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999875
No 14
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-36 Score=379.48 Aligned_cols=255 Identities=19% Similarity=0.252 Sum_probs=234.0
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCC-CccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~g-d~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
..|++.+.+++++|....|.+.|++|+++|+..++.....| ..+|+. +|+|++++||++.+|++++|++|+++++|.+
T Consensus 138 ~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~-~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~ 216 (527)
T cd03335 138 ESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIK-AVNILKAHGKSAKESYLVNGYALNCTRASQG 216 (527)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHH-HeEEEEecCcChhhcceeeeEEEecccCCCC
Confidence 34888899999999999999999999999999996321222 247884 8999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCcccC---------CcHHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcC
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSGL---------SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1705)
Q Consensus 350 M~~~i~NPRILLL~~~LEy~r~el---------sSle~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~g 419 (1705)
|+++++||||+|++++|++.+.++ ..++. .++|++++++++++|++.|++|||++++|++.|++||.++|
T Consensus 217 m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~ 296 (527)
T cd03335 217 MPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAG 296 (527)
T ss_pred CcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC
Confidence 999999999999999999988762 34667 79999999999999999999999999999999999999999
Q ss_pred CeEeccCCHHHHHHHHHHhCCceecccc-CC------CCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCc
Q 000300 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LT------SQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRL 492 (1705)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L~------~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~ 492 (1705)
|++++++++.+|+|||++|||+|+++++ ++ +..||+|+.|+++++++ ++|++|+||..+.
T Consensus 297 I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~g~~~~~ 363 (527)
T cd03335 297 AMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGD-------------DELILIKGTKKRS 363 (527)
T ss_pred cEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECC-------------eEEEEEEcCCCCC
Confidence 9999999999999999999999999986 53 34799999999999753 6899999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 493 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 493 gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
+|||+|||+|..+|+|+||+++||++++++++.++++|+||||++..
T Consensus 364 ~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ 410 (527)
T cd03335 364 SASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETA 410 (527)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 15
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.3e-36 Score=373.83 Aligned_cols=249 Identities=23% Similarity=0.345 Sum_probs=232.1
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC-
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH- 349 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~- 349 (1705)
..|++.+.+++++|....|.+.|++|+++|+..+.+ ..|. ++|+|++++||++.||++++|+||++++++..
T Consensus 149 ~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~ 221 (522)
T cd03340 149 ELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDD------DLDL-DMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGF 221 (522)
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcc------cCCh-hHheEeeecCCChhhceeeeeEEEecccCcccc
Confidence 348889999999999999999999999999999965 2466 59999999999999999999999999999654
Q ss_pred --CCccccCCcEEEEeeecccCccc------CCc---HHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHH
Q 000300 350 --MPTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILE 417 (1705)
Q Consensus 350 --M~~~i~NPRILLL~~~LEy~r~e------lsS---le~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k 417 (1705)
||++++||||||++++||+.+.+ +.+ ++. +++|++++.+++++|++.|++||+++++|++.|++||.+
T Consensus 222 ~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~ 301 (522)
T cd03340 222 EQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFAD 301 (522)
T ss_pred ccCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHH
Confidence 69999999999999999998764 344 566 799999999999999999999999999999999999999
Q ss_pred cCCeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEE
Q 000300 418 KGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTV 496 (1705)
Q Consensus 418 ~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTI 496 (1705)
+||+++.+|++.+|+|||++|||+|+++++ +++..||+|+.|++++++. ++|++|+||+.+.+|||
T Consensus 302 ~~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI 368 (522)
T cd03340 302 RDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGG-------------ERYNIFTGCPKAKTCTI 368 (522)
T ss_pred CCcEEEEeCCHHHHHHHHHHHCCEEeeccccCCccccccceEEEEEEECC-------------EEEEEEECCCCCceEEE
Confidence 999999999999999999999999999999 9999999999999988732 79999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 497 LLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 497 LLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
+|||++..+|+|+||+++||++++++++.++.+|+|||+++..
T Consensus 369 llrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ 411 (522)
T cd03340 369 ILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEME 411 (522)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHH
Confidence 9999999999999999999999999999999999999999875
No 16
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=6.6e-36 Score=375.11 Aligned_cols=248 Identities=21% Similarity=0.271 Sum_probs=231.7
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~M 350 (1705)
+.|++.+.+++++|....|.+.|++|+++|+..+.. .+|+ ++|+|+|++||++.||++++|+|+++++.| .|
T Consensus 159 ~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~------~~~~-~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~ 230 (533)
T PTZ00212 159 EDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKG------SGNL-DYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQ 230 (533)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhc------cCCc-cceEEEEecCcCccccEEEEeEEEecccCC-CC
Confidence 568899999999999999999999999999999864 2566 489999999999999999999999999988 58
Q ss_pred CccccCCcEEEEeeecccCcccC-------Cc---HHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcC
Q 000300 351 PTEYKNPRLLLIRGVLGLSSSGL-------SS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1705)
Q Consensus 351 ~~~i~NPRILLL~~~LEy~r~el-------sS---le~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~g 419 (1705)
+++++||||+|++++|||.+.+. .+ +.. .++|++++++++.+|++.+++||+++++|++.|+++|.++|
T Consensus 231 ~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~ 310 (533)
T PTZ00212 231 PKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAG 310 (533)
T ss_pred CccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC
Confidence 99999999999999999998862 44 545 78999999999999999999999999999999999999999
Q ss_pred CeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000300 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498 (1705)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTILL 498 (1705)
|++|+++++.+|+|||++|||+++++++ +++.+||+|+.|+++.++. ++|++|+||..+.+|||+|
T Consensus 311 I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~l 377 (533)
T PTZ00212 311 IMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGE-------------DKLIRFSGCAKGEACTIVL 377 (533)
T ss_pred CEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECC-------------eEEEEEEccCCCCEEEEEE
Confidence 9999999999999999999999999999 9989999999999888642 6899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 499 RG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
||+|..+|+|+||.++||++++++++.++++|+||||++..
T Consensus 378 rG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ 418 (533)
T PTZ00212 378 RGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEML 418 (533)
T ss_pred ECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHH
Confidence 99999999999999999999999999999999999999875
No 17
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.8e-36 Score=373.29 Aligned_cols=255 Identities=20% Similarity=0.296 Sum_probs=236.6
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~M 350 (1705)
+.|++.+.+++++|....|.+.|++|+++|+..+... ....+|+ ++|+|+|++||++.||++++|++|++++.|..|
T Consensus 158 ~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m 234 (532)
T TIGR02343 158 EPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADM--ERRDVDF-DLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQM 234 (532)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhc--CCCcCCH-HHeeEEEecCCCcccceeEeeEEEecCcCCCCC
Confidence 5688999999999999999999999999999998542 1235788 599999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccc------CCc---HHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCC
Q 000300 351 PTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 420 (1705)
Q Consensus 351 ~~~i~NPRILLL~~~LEy~r~e------lsS---le~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gI 420 (1705)
++.++||||+|++++||+.+.+ +.+ ++. +++|+++++.++++|++.|++||+++++|++.|++||.++||
T Consensus 235 ~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i 314 (532)
T TIGR02343 235 PKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDL 314 (532)
T ss_pred CeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCc
Confidence 9999999999999999999875 344 456 899999999999999999999999999999999999999999
Q ss_pred eEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEe
Q 000300 421 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLK 499 (1705)
Q Consensus 421 tvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTILLR 499 (1705)
.++++++..+|+|||++|||.++++++ ++...||+|+.|+++.++. ..+++++|+||+.+..|||+||
T Consensus 315 ~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~-----------~~~~~~~i~~~~~~~~~TIllr 383 (532)
T TIGR02343 315 PAVRWVGGHELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGT-----------TKDRMLVIEQCKNSKAVTIFIR 383 (532)
T ss_pred EEEEcCCHHHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecC-----------CcceEEEEECCCCCCEEEEEEE
Confidence 999999999999999999999999999 9989999999999999854 1258999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 500 GSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 500 G~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
|+|..+|+|+||+++||++++++++.++.+|+||||++..
T Consensus 384 G~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ 423 (532)
T TIGR02343 384 GGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEIS 423 (532)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHH
Confidence 9999999999999999999999999999999999999875
No 18
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-35 Score=368.76 Aligned_cols=249 Identities=18% Similarity=0.213 Sum_probs=231.8
Q ss_pred HHHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000300 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 270 l~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
..+|++.+++++++|....|.+.|++|+++|+..+.. .+|+ ++|+|++++||++.||++++|+|+++.+.| .
T Consensus 146 ~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~ 217 (517)
T cd03336 146 REDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKG------SGNL-DAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-N 217 (517)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhc------cCCc-cceeEEEccCCCccceEEEeeEEEecccCC-C
Confidence 3568899999999999999999999999999999853 3566 589999999999999999999999999877 5
Q ss_pred CCccccCCcEEEEeeecccCcccC-------C---cHHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHc
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSGL-------S---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 418 (1705)
Q Consensus 350 M~~~i~NPRILLL~~~LEy~r~el-------s---Sle~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~ 418 (1705)
|+++++||||+|++++|||.+.+. . ++.. .++|++++++++.+|++.|+++|+++++|++.|++||.++
T Consensus 218 ~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~ 297 (517)
T cd03336 218 QPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA 297 (517)
T ss_pred CCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC
Confidence 899999999999999999988752 2 3556 7899999999999999999999999999999999999999
Q ss_pred CCeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEE
Q 000300 419 GMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVL 497 (1705)
Q Consensus 419 gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTIL 497 (1705)
||+++++++..+|+|||++|||+++++++ +++.+||+|+.|++..++. ++|++|+||+.+.+|||+
T Consensus 298 ~I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~ 364 (517)
T cd03336 298 GIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGE-------------DKLIRFSGVAAGEACTIV 364 (517)
T ss_pred CcEEEecCCHHHHHHHHHHhCCEEecccCCCCcccccccceEEEEEECC-------------eEEEEEEccCCCceEEEE
Confidence 99999999999999999999999999999 9999999999999887642 799999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 498 LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 498 LRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
|||+|..+|+|+||+++||++++++++.++.+|+||||++..
T Consensus 365 lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ 406 (517)
T cd03336 365 LRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEML 406 (517)
T ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHH
Confidence 999999999999999999999999999999999999999875
No 19
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=1.4e-35 Score=330.50 Aligned_cols=206 Identities=32% Similarity=0.427 Sum_probs=194.5
Q ss_pred HHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCCC
Q 000300 272 QLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMP 351 (1705)
Q Consensus 272 qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~M~ 351 (1705)
.|++.+.+++++|. ..|.+.|++|+++|+..+.++.. ++..+||+|++++||++.||++++|++|+|+++|+.|+
T Consensus 3 ~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~----~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~ 77 (209)
T cd03333 3 LLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNR----MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMP 77 (209)
T ss_pred HHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCC----CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCC
Confidence 56778888999999 99999999999999999987432 55557999999999999999999999999999999999
Q ss_pred ccccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCCHHHH
Q 000300 352 TEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRL 431 (1705)
Q Consensus 352 ~~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK~~~L 431 (1705)
++++||||+|++++||| |||++++|++.|+++|.++||++++++++.+|
T Consensus 78 ~~~~n~~Ill~~~~le~-------------------------------vii~~~~I~~~al~~l~~~~I~~v~~~~~~~l 126 (209)
T cd03333 78 KRLENAKILLLDCPLEY-------------------------------VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDL 126 (209)
T ss_pred eEcCCCcEEEEeCCeeE-------------------------------EEEecCcccHHHHHHHHHCCCEEEEeCCHHHH
Confidence 99999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHHH
Q 000300 432 ERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIK 510 (1705)
Q Consensus 432 eRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~evK 510 (1705)
+|||++|||+++++++ ++.++||+|+.|+++++++ ++|+||+||..+.+|||+|||++..+|+|+|
T Consensus 127 ~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~tIllrG~t~~~l~e~k 193 (209)
T cd03333 127 ERIARATGATIVSSLEDLTPEDLGTAELVEETKIGE-------------EKLTFIEGCKGGKAATILLRGATEVELDEVK 193 (209)
T ss_pred HHHHHHHCCEEecccccCChhhceeeeEEEEEEECC-------------eEEEEEEcCCCCCEEEEEEECCCHhHHHHHH
Confidence 9999999999999999 9999999999999999743 7999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 000300 511 SVVQCAVVMAYHLILE 526 (1705)
Q Consensus 511 rvl~dav~vvy~l~lE 526 (1705)
|+++||++++++++++
T Consensus 194 r~l~dal~~~~~~~~~ 209 (209)
T cd03333 194 RSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999764
No 20
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-35 Score=370.78 Aligned_cols=254 Identities=19% Similarity=0.261 Sum_probs=235.3
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC-
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH- 349 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~- 349 (1705)
..|++.+.+++++|....|.+.|++|+++|+..|.++. .++.+|++ .|+|.+++||++.||++++|++|+++++|+.
T Consensus 137 ~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~-~~~~~d~~-~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~ 214 (515)
T cd03338 137 ESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPA-TATNVDLK-DIRIVKKLGGTIEDTELVDGLVFTQKASKKAG 214 (515)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhccc-ccCcCCHH-HeEEEEecCCChhhceeeeeEEEeccccCcCC
Confidence 35888899999999999999999999999999998642 22468885 8999999999999999999999999999986
Q ss_pred CCccccCCcEEEEeeecccCccc------CC---cHHH-HHHHHHHHHHHHHHHhhcCCeEEEecccc-----cHHHHHH
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTV-----SRDIQES 414 (1705)
Q Consensus 350 M~~~i~NPRILLL~~~LEy~r~e------ls---Sle~-i~QEkeyL~~lV~rI~~~gpnVVLVeksV-----s~~Al~~ 414 (1705)
||+.+.||||++|+|+|||.+.+ +. +++. +++|+++++.++++|++.|++||||+++| +++|++|
T Consensus 215 ~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~ 294 (515)
T cd03338 215 GPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHF 294 (515)
T ss_pred CCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHH
Confidence 59999999999999999998875 23 4667 89999999999999999999999999987 9999999
Q ss_pred HHHcCCeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCC-Cc
Q 000300 415 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT-RL 492 (1705)
Q Consensus 415 L~k~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~-~~ 492 (1705)
|.++||++++++++.+|+|||++|||+++++++ ++...||+|+.|+++++++ ++|++|+||+. +.
T Consensus 295 l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~-------------~~~~~i~~~~~~~~ 361 (515)
T cd03338 295 LAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGD-------------GKIVKITGVKNPGK 361 (515)
T ss_pred HHHCCceEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECC-------------eEEEEEEecCCCCc
Confidence 999999999999999999999999999999999 9989999999999999742 68999999997 69
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 493 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 493 gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
+|||+|||+|..+|+|+||.++||++++++++.++++|+||||++..
T Consensus 362 ~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ 408 (515)
T cd03338 362 TVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIE 408 (515)
T ss_pred eEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 21
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.9e-35 Score=368.33 Aligned_cols=254 Identities=20% Similarity=0.260 Sum_probs=234.8
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCC-CC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAH-KH 349 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvah-k~ 349 (1705)
.+|++.+.+++++|....|.+.|++|+++|+..+.++. .++.+|+ +.|+|+|++||++.||++++|++|++++.| ++
T Consensus 138 ~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~-~~~~~~~-~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~ 215 (517)
T TIGR02342 138 EILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPE-NDKNVDL-NDIKVVKKLGGTIDDTELIEGLVFTQKASRSAG 215 (517)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccc-cCCccCH-HHeeEEeccCCChhhcEEEeeEEEeccccccCC
Confidence 45889999999999999999999999999999997632 2236888 589999999999999999999999999999 59
Q ss_pred CCccccCCcEEEEeeecccCccc------CC---cHHH-HHHHHHHHHHHHHHHhhcCCeEEEecccc-----cHHHHHH
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTV-----SRDIQES 414 (1705)
Q Consensus 350 M~~~i~NPRILLL~~~LEy~r~e------ls---Sle~-i~QEkeyL~~lV~rI~~~gpnVVLVeksV-----s~~Al~~ 414 (1705)
||++++||||++++|+|++.+.+ +. +++. +++|+++++.++++|++.|++||+++++| +++|++|
T Consensus 216 mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~ 295 (517)
T TIGR02342 216 GPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHF 295 (517)
T ss_pred CCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHH
Confidence 99999999999999999998875 33 3577 89999999999999999999999999998 9999999
Q ss_pred HHHcCCeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCC-c
Q 000300 415 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTR-L 492 (1705)
Q Consensus 415 L~k~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~-~ 492 (1705)
|.++||.+++++++.+|+|||++|||+++++++ ++..+||+|+.|++++++. ++|++|++|+.. .
T Consensus 296 l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~-------------~~~~~i~~~~~~~~ 362 (517)
T TIGR02342 296 LAKMKIMVVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDG-------------GKIIKITGIQNAGK 362 (517)
T ss_pred HhhCCceEEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECC-------------eEEEEEEccCCCCc
Confidence 999999999999999999999999999999999 9999999999999887632 689999999875 8
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 493 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 493 gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
.|||+|||+|..+++|+||+++||++++++++.++.+|+||||++..
T Consensus 363 ~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ 409 (517)
T TIGR02342 363 TVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIE 409 (517)
T ss_pred eEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 22
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.3e-35 Score=364.78 Aligned_cols=225 Identities=26% Similarity=0.439 Sum_probs=210.5
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCC-CccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~g-d~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
..|++.+.+++++|..+.|.+.|++|+++|+..+.++.... ..+|+++||+|+|++||++.||++++|+||+|+++|++
T Consensus 145 ~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~ 224 (480)
T cd03337 145 AQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPK 224 (480)
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCC
Confidence 45888889999999999999999999999999998864332 36899889999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCCHH
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLH 429 (1705)
Q Consensus 350 M~~~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK~~ 429 (1705)
|+++++||||||++|+||| ||+++++|++.|++||.++||++++++++.
T Consensus 225 m~~~~~n~kIlll~~~Le~-------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~ 273 (480)
T cd03337 225 MRRRIENPRIVLLDCPLEY-------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKT 273 (480)
T ss_pred CCcEecCCCEEEEecCcce-------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHH
Confidence 9999999999999999998 999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceecccc-CCCCCccc-cceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHH
Q 000300 430 RLERVARCTGSPILSSGS-LTSQKLKH-CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELK 507 (1705)
Q Consensus 430 ~LeRIAR~TGA~IvsSid-L~~~~LG~-C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~ 507 (1705)
+|+|||++|||+|+++++ +....||+ |+.|++++++ .++|+||+||..+.+|||+|||++..+|+
T Consensus 274 ~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~TIllrG~t~~~l~ 340 (480)
T cd03337 274 DNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIG-------------DEYFTFITECKDPKACTILLRGASKDVLN 340 (480)
T ss_pred HHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeC-------------CeEEEEEEcCCCCCEEEEEEECCCHHHHH
Confidence 999999999999999999 99999999 6677777653 26899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 508 RIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 508 evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
|+||+++||++++++++.++.+|+||||++..
T Consensus 341 e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ 372 (480)
T cd03337 341 EVERNLQDAMAVARNIILNPKLVPGGGATEMA 372 (480)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHH
Confidence 99999999999999999999999999999875
No 23
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-34 Score=364.06 Aligned_cols=255 Identities=19% Similarity=0.248 Sum_probs=233.3
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCC-CccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~g-d~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
..|++.+.+++++|....|.+.|++|+++|+..++.+...| ..+|+ ++|+|+|++||++.||++++|++|++.+.|.+
T Consensus 142 ~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~ 220 (536)
T TIGR02340 142 EALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPI-KAVNILKAHGGSARESYLVKGYALNCTRASQQ 220 (536)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccch-HHeEEEEecCCCccccEEEEEEEEecccCCCC
Confidence 44788889999999999999999999999999996321222 25788 48999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCcccC---------CcHHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcC
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSGL---------SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1705)
Q Consensus 350 M~~~i~NPRILLL~~~LEy~r~el---------sSle~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~g 419 (1705)
|+++++||||+|++++|++.+.++ ..++. .++|++++++++++|++.+++||+++++|++.|++||.++|
T Consensus 221 m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~ 300 (536)
T TIGR02340 221 MPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG 300 (536)
T ss_pred CcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC
Confidence 999999999999999999998662 34667 88999999999999999999999999999999999999999
Q ss_pred CeEeccCCHHHHHHHHHHhCCceecccc-C------CCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCc
Q 000300 420 MTLVFDMKLHRLERVARCTGSPILSSGS-L------TSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRL 492 (1705)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L------~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~ 492 (1705)
|++++++++.+|+|||++|||+++++++ + +...||+|+.|++++++. ++|++|+||..+.
T Consensus 301 I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~ 367 (536)
T TIGR02340 301 AMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIAD-------------DECILIKGTKGRK 367 (536)
T ss_pred cEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECC-------------eEEEEEEcCCCCC
Confidence 9999999999999999999999999986 5 344599999999999853 6899999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 493 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 493 gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
+|||+|||+|..+++|+||.++||++++++++.++++|+||||++..
T Consensus 368 ~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ 414 (536)
T TIGR02340 368 SASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETA 414 (536)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 24
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-34 Score=363.18 Aligned_cols=252 Identities=23% Similarity=0.305 Sum_probs=233.7
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~M 350 (1705)
..|++.+.+++++|....|.+.|++|+++|+..+.++ +..+|+. .|+|+|++||+..||++++|++|++.+.|+.|
T Consensus 146 ~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~---~~~i~~~-~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~ 221 (531)
T TIGR02347 146 ELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKD---GEQIDLF-MVEIMEMKHKSATDTTLIRGLVLDHGARHPDM 221 (531)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhc---CCCCChh-HeEEEEecCCCccccEEEeeEEEecCcCCCCC
Confidence 4588889999999999999999999999999999763 2247774 79999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCccc------CC---cHHH-HHHHHHHHHHHHHHHhhcC-------Ce---EEEecccccHH
Q 000300 351 PTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCH-------PN---VVLVEKTVSRD 410 (1705)
Q Consensus 351 ~~~i~NPRILLL~~~LEy~r~e------ls---Sle~-i~QEkeyL~~lV~rI~~~g-------pn---VVLVeksVs~~ 410 (1705)
++++.||||+|++++|++.+++ +. .+.. +.+|++|+++++++|+.++ |+ ||+++++|++.
T Consensus 222 ~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~ 301 (531)
T TIGR02347 222 PRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPP 301 (531)
T ss_pred ceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHH
Confidence 9999999999999999999866 23 3556 8999999999999999976 36 99999999999
Q ss_pred HHHHHHHcCCeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCC
Q 000300 411 IQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCP 489 (1705)
Q Consensus 411 Al~~L~k~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~ 489 (1705)
|++||.++||++++++++.+|+|||++|||+++++++ +++..||+|+.|+++.++. ++|++|+||.
T Consensus 302 a~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~ 368 (531)
T TIGR02347 302 SLDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGE-------------EKYTFIEEVK 368 (531)
T ss_pred HHHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECC-------------eEEEEEEcCC
Confidence 9999999999999999999999999999999999999 9999999999999998743 6899999999
Q ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 490 TRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 490 ~~~gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
.+..|||+|||+|..+|+|+||+++||++++++++.++++|+||||++..
T Consensus 369 ~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ 418 (531)
T TIGR02347 369 NPKSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIA 418 (531)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999875
No 25
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-34 Score=362.95 Aligned_cols=250 Identities=21% Similarity=0.320 Sum_probs=231.9
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCC--
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK-- 348 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk-- 348 (1705)
..|++.+.+++++|....+.+.|++|+++|+..+.++ .+|+ ++|+|+++.||++.||++++|++|++++++.
T Consensus 149 ~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~-----~~~~-~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~ 222 (522)
T TIGR02345 149 EVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDID-----DLDL-KLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGF 222 (522)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhc-----cCCh-hHheEEeecCCCHHhcceecceEEecccCcccc
Confidence 4688899999999999999999999999999999752 4777 4899999999999999999999999998865
Q ss_pred -CCCccccCCcEEEEeeecccCccc------CC---cHHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHH
Q 000300 349 -HMPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILE 417 (1705)
Q Consensus 349 -~M~~~i~NPRILLL~~~LEy~r~e------ls---Sle~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k 417 (1705)
.||++++||||+|++++|++.+.+ +. .++. ++.|++++++++++|+++|++||+|+++|++.+++||.+
T Consensus 223 ~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~ 302 (522)
T TIGR02345 223 EQQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFAD 302 (522)
T ss_pred ccCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHH
Confidence 469999999999999999998765 23 3555 689999999999999999999999999999999999999
Q ss_pred cCCeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEE
Q 000300 418 KGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTV 496 (1705)
Q Consensus 418 ~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTI 496 (1705)
+||+++.+++..+|+|||++|||+|+++++ +++..||+|+.|++++++. ++|++|+||+.+.+|||
T Consensus 303 ~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~-------------~r~~~~~g~~~~~~~TI 369 (522)
T TIGR02345 303 HNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIGS-------------ERYNYFTGCPHAKTCTI 369 (522)
T ss_pred CCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCceEEE
Confidence 999999999999999999999999999999 9989999999999888642 79999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 497 LLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 497 LLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
+|||+|..+|+|+||+++||++++++++.++.+|+|||+++..
T Consensus 370 ~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ 412 (522)
T TIGR02345 370 ILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEME 412 (522)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHH
Confidence 9999999999999999999999999999999999999999875
No 26
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-34 Score=329.43 Aligned_cols=248 Identities=21% Similarity=0.337 Sum_probs=231.4
Q ss_pred HHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC---
Q 000300 273 LLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH--- 349 (1705)
Q Consensus 273 LL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~--- 349 (1705)
|.+.+.++++||.+....++|++++++|+..+.. ..|. +.|.||||+||.+.||.+|+||.|.|.+.+.+
T Consensus 155 L~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~------~l~~-~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEq 227 (543)
T KOG0361|consen 155 LEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDN------DLDL-NMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQ 227 (543)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcc------ccch-hhcceeecCCCccchhhhccceeeeehccccchhh
Confidence 6688889999999999999999999999998852 2445 68999999999999999999999999999875
Q ss_pred CCccccCCcEEEEeeecccCccc---------CCcHHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcC
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1705)
Q Consensus 350 M~~~i~NPRILLL~~~LEy~r~e---------lsSle~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~g 419 (1705)
.|+++.|||||+|+..||..... +..++. +..|+..|..++++|+..|.||||..-.|.++|.+||++++
T Consensus 228 qPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrd 307 (543)
T KOG0361|consen 228 QPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRD 307 (543)
T ss_pred CccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccC
Confidence 59999999999999999985332 456888 99999999999999999999999999999999999999999
Q ss_pred CeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000300 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498 (1705)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTILL 498 (1705)
|.++.+|...+|.|+..++|+.|.++.. +.+..||+|+.|+.++++. ..|-+|+||++.+.||++|
T Consensus 308 iFCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~-------------eRyN~Fegcp~aktcTliL 374 (543)
T KOG0361|consen 308 IFCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGG-------------ERYNLFEGCPKAKTCTLIL 374 (543)
T ss_pred ceecCcCCHHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcc-------------hhhhhhcCCCccceeEEEE
Confidence 9999999999999999999999999998 9999999999999999753 5899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCcccccC
Q 000300 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1705)
Q Consensus 499 RG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~~ 540 (1705)
||+-++.++|++|++|||++++++.+++.++++||||++++.
T Consensus 375 RGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMEl 416 (543)
T KOG0361|consen 375 RGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMEL 416 (543)
T ss_pred eccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehH
Confidence 999999999999999999999999999999999999999874
No 27
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.6e-33 Score=348.40 Aligned_cols=248 Identities=19% Similarity=0.230 Sum_probs=229.5
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~M 350 (1705)
..|++.+++++++|....|.+.|+.|+++|+..+.. + .|+ +.|+|.|++||++.||++++|+|+.+.+.| .|
T Consensus 148 ~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~----~--~~~-~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~ 219 (519)
T TIGR02341 148 DDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKG----S--GNL-DAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQ 219 (519)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhcc----C--CCh-hheEEEEccCCCcccceEEeeEEEeccCCC-CC
Confidence 568899999999999999999999999999999853 1 255 369999999999999999999999999887 68
Q ss_pred CccccCCcEEEEeeecccCccc-------CCc---HHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcC
Q 000300 351 PTEYKNPRLLLIRGVLGLSSSG-------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1705)
Q Consensus 351 ~~~i~NPRILLL~~~LEy~r~e-------lsS---le~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~g 419 (1705)
+++++||||++++++|++.+.+ +.+ +.. .+.|+++++++++.|++.|+|+|++++.|++.|++||.++|
T Consensus 220 ~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~ 299 (519)
T TIGR02341 220 PKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAG 299 (519)
T ss_pred ceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCC
Confidence 9999999999999999998755 234 556 78999999999999999999999999999999999999999
Q ss_pred CeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000300 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498 (1705)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTILL 498 (1705)
|.++++++..+|+|||++|||.++++++ +++.+||+|+.|+++.++. +.|++|+||+.+..|||+|
T Consensus 300 I~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TIll 366 (519)
T TIGR02341 300 VMAIEHADFEGIERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGE-------------DKLLKFSGVKLGEACTIVL 366 (519)
T ss_pred cEEEecCCHHHHHHHHHHhCCEEecccccCCccccccCceEEEEEECC-------------EEEEEEEcCCCCCEEEEEE
Confidence 9999999999999999999999999999 9988999999999877642 7899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 499 RG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
||+|..+|+|+||.++||++++++++.++.+|+||||++..
T Consensus 367 rG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ 407 (519)
T TIGR02341 367 RGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEML 407 (519)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999875
No 28
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.7e-32 Score=339.02 Aligned_cols=233 Identities=21% Similarity=0.300 Sum_probs=214.5
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~M 350 (1705)
++|++.+.+++++|....|.+.|++|+++|+..+.++ ++.+|+ +.|+|+|++||+..||++++|++|++.+.|+.|
T Consensus 142 ~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~---~~~~~~-~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m 217 (484)
T cd03342 142 ELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKP---DEPIDL-HMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDM 217 (484)
T ss_pred HHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhc---CCccCh-hHeEEEEecCCChhhceEEeeEEEecCCCCCCC
Confidence 4688889999999999999999999999999999863 336888 489999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCCHHH
Q 000300 351 PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHR 430 (1705)
Q Consensus 351 ~~~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK~~~ 430 (1705)
++++.||||+|++++|++.+.++... + ..+||+++++|++.|+++|.++||++++++++.+
T Consensus 218 ~~~~~n~~Ill~~~~le~~~~~~~~~--~-----------------~~~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~ 278 (484)
T cd03342 218 PKRVENAYILTCNVSLEYEKTEVNSG--F-----------------FYSVVINQKGIDPPSLDMLAKEGILALRRAKRRN 278 (484)
T ss_pred CccccCceEEEEeCCCCCCccccCcE--E-----------------EEEEEEeCCCccHHHHHHHHHCCCeEEEeCCHHH
Confidence 99999999999999999998763210 0 0139999999999999999999999999999999
Q ss_pred HHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHH
Q 000300 431 LERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRI 509 (1705)
Q Consensus 431 LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~ev 509 (1705)
|+|||++|||+++++++ +++..||+|+.|+++.++. ++|+||+||..+..|||+|||+|..+|+|+
T Consensus 279 l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~ 345 (484)
T cd03342 279 MERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGE-------------EKYTFIEGVKNPKSCTILIKGPNDHTITQI 345 (484)
T ss_pred HHHHHHHhCCEEecccccCChhhCcccceEEEEEECC-------------eEEEEEECCCCCcEEEEEEeCCCHHHHHHH
Confidence 99999999999999999 9999999999999998743 689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 510 KSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 510 Krvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
||+++||++++++++.++++|+||||++..
T Consensus 346 er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ 375 (484)
T cd03342 346 KDAIRDGLRAVKNAIEDKCVVPGAGAFEVA 375 (484)
T ss_pred HHHHHHHHHHHHHHhcCCcEEeCCCHHHHH
Confidence 999999999999999999999999999875
No 29
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.98 E-value=8.9e-32 Score=333.39 Aligned_cols=221 Identities=25% Similarity=0.321 Sum_probs=209.8
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~M 350 (1705)
.+|++.+.+++++|....|.+.|++|+++|+..+.++.. .+|. ++|+|++++||++.||++++|++|++++.|+.|
T Consensus 137 ~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~---~~~~-~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m 212 (464)
T cd00309 137 EELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENG---DVDL-GVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM 212 (464)
T ss_pred HHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccC---cccc-ceEEEEecCCCCcccceeeeeEEEecCCCCCCC
Confidence 568899999999999999999999999999999987542 3555 699999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCCHHH
Q 000300 351 PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHR 430 (1705)
Q Consensus 351 ~~~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK~~~ 430 (1705)
++.++||||+|++++|++ ||+++++|++.|+++|.++||++++++++.+
T Consensus 213 ~~~~~n~~Ili~~~~Le~-------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~ 261 (464)
T cd00309 213 PKRLENAKILLLDCKLEY-------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKED 261 (464)
T ss_pred ceeecCceEEEEecCcce-------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHH
Confidence 999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHH
Q 000300 431 LERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRI 509 (1705)
Q Consensus 431 LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~ev 509 (1705)
|+|||++|||+++++++ ++...||+|+.|++++++. ++|++|+||..+.+|||+|||++..+|+|+
T Consensus 262 L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~e~ 328 (464)
T cd00309 262 LERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGD-------------EKYTFIEGCKGGKVATILLRGATEVELDEA 328 (464)
T ss_pred HHHHHHHhCCEEecccccCCcccCccccEEEEEEEcC-------------eeEEEEEecCCCCEEEEEEeCCcHHHHHHH
Confidence 99999999999999999 9999999999999999753 799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 510 KSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 510 Krvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
||+++||++++++++.++.|++|||+++..
T Consensus 329 ~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ 358 (464)
T cd00309 329 ERSLHDALCAVRAAVEDGGIVPGGGAAEIE 358 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCcccCCcHHHHH
Confidence 999999999999999999999999999875
No 30
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.98 E-value=2.7e-31 Score=333.32 Aligned_cols=250 Identities=19% Similarity=0.266 Sum_probs=228.5
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~M 350 (1705)
..|++.+++++++|..+. .+.|++|+++|+..+.++. .+.+|+ +.|+|+|++||+..||++++|++|++... .|
T Consensus 149 ~~l~~i~~tsl~sK~~~~-~~~ls~l~~~Ai~~v~~~~--~~~~~~-~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~ 222 (531)
T TIGR02346 149 KELIKALKASISSKQYGN-EDFLAQLVAKACSTVMPKN--PENFNV-DNIRVSKIMGGSISNSEVLKGMVFNREAE--GS 222 (531)
T ss_pred HHHHHHHHHHhccccCch-HHHHHHHHHHHHHHHhhcC--CCcCCh-hHeeEEEecCCChhhceeEeeeEEeccCC--CC
Confidence 457788888899998887 9999999999999997642 235788 47999999999999999999999999965 58
Q ss_pred CccccCCcEEEEeeecccCccc------CCc---HHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCC
Q 000300 351 PTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 420 (1705)
Q Consensus 351 ~~~i~NPRILLL~~~LEy~r~e------lsS---le~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gI 420 (1705)
|++++||||+|+.+||++.+.+ +.+ +.. ...|.++++.++++|++.|++|||++++|++.|++||.++||
T Consensus 223 ~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I 302 (531)
T TIGR02346 223 VKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNI 302 (531)
T ss_pred ceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCc
Confidence 9999999999999999998765 444 555 788999999999999999999999999999999999999999
Q ss_pred eEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCC-CCceEEEEE
Q 000300 421 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCP-TRLGCTVLL 498 (1705)
Q Consensus 421 tvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~-~~~gcTILL 498 (1705)
.++++++..+|+|||++|||+++++++ ++...||+|+.|++++++. +.|.+|++|. .+..|||+|
T Consensus 303 ~av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~i~~~~~~~~~~tI~l 369 (531)
T TIGR02346 303 MVLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGG-------------QKVTVFKQENGDSKISTIIL 369 (531)
T ss_pred EEEecCCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECC-------------EEEEEEEccCCCCCeEEEEE
Confidence 999999999999999999999999999 9888999999999999632 5799999998 578999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 499 RG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
||+|..+++|+||.++||++++++++.++.+|+||||++..
T Consensus 370 rG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ 410 (531)
T TIGR02346 370 RGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIE 410 (531)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHH
Confidence 99999999999999999999999999999999999999875
No 31
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.97 E-value=3.9e-31 Score=328.49 Aligned_cols=249 Identities=27% Similarity=0.426 Sum_probs=231.6
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~M 350 (1705)
+.|++.+.+++.+|....|.+.|++|+++|+..+..+ +|+. .++|+++.||+..||++++|++|++.+++.+|
T Consensus 117 ~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~------~~~~-~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~ 189 (485)
T PF00118_consen 117 ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSN------FDLD-NIKIIKIPGGSISDSELINGIVLDKGFSSPNM 189 (485)
T ss_dssp HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTT------HHGG-GEEEEEEESSSSGGEEEESEEEESSSBSSTTS
T ss_pred hhhhhhhcccccccccccchhhhhhhHHHHHHhhccc------cccc-chhhhhhccccccccccccceeeecccccccc
Confidence 6788999999999999999999999999999555432 6675 59999999999999999999999999999999
Q ss_pred CccccCCcEEEEeeecccCcc-c-------CCcHHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCCe
Q 000300 351 PTEYKNPRLLLIRGVLGLSSS-G-------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMT 421 (1705)
Q Consensus 351 ~~~i~NPRILLL~~~LEy~r~-e-------lsSle~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gIt 421 (1705)
+++++||||++++++|++.+. + ...++. .++|+++++.++++|.+.+++|||++++|++.|+++|.++||.
T Consensus 190 ~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~ 269 (485)
T PF00118_consen 190 PKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGIL 269 (485)
T ss_dssp BSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHE
T ss_pred ccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhhh
Confidence 999999999999999999876 1 234777 8999999999999999999999999999999999999999999
Q ss_pred EeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEE--cCCCCceEEEEE
Q 000300 422 LVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE--GCPTRLGCTVLL 498 (1705)
Q Consensus 422 vv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffe--Gc~~~~gcTILL 498 (1705)
++.+|+..+|+|||++|||.++++++ +.+..+|+|+.+++..++. ++|++|+ +|.....|||+|
T Consensus 270 ~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~-------------~~~~~~~~~~~~~~~~~Till 336 (485)
T PF00118_consen 270 VIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIGN-------------KKYIFIEGIGCLSSKICTILL 336 (485)
T ss_dssp EESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEETS-------------SEEEEEEEHSESSSSEEEEEE
T ss_pred ccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhccccc-------------ccccccccccccccCceEEEe
Confidence 99999999999999999999999999 9888899999998888743 7899999 699999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 499 RG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
||++..+++++||++++|++++++++.++.+++|||+++..
T Consensus 337 ~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~ 377 (485)
T PF00118_consen 337 RGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELH 377 (485)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhh
Confidence 99999999999999999999999999999999999999874
No 32
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-31 Score=301.42 Aligned_cols=256 Identities=18% Similarity=0.245 Sum_probs=231.6
Q ss_pred HHHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000300 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 270 l~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
..+|++.+.++|+||..+++...|++++++|+..|... .+...+|++ .|||.|-.||.+.|+++|+|+||++......
T Consensus 154 re~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp-~~~~nvdlk-dIkivkklGgtvdDte~i~glvl~~~~~~~~ 231 (534)
T KOG0358|consen 154 RESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDP-ENATNVDLK-DIKIVKKLGGTVDDTELIKGLVLTQKASKSA 231 (534)
T ss_pred HHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCc-ccccccchh-hhhhHHhhCCccchhhhhcceEEeeecccCC
Confidence 35699999999999999999999999999999988532 233457885 7899999999999999999999999988777
Q ss_pred CCccccCCcEEEEeeecccCccc------CC---cHHH-HHHHHHHHHHHHHHHhhcCCeEEEecccc-----cHHHHHH
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTV-----SRDIQES 414 (1705)
Q Consensus 350 M~~~i~NPRILLL~~~LEy~r~e------ls---Sle~-i~QEkeyL~~lV~rI~~~gpnVVLVeksV-----s~~Al~~ 414 (1705)
-|++++++||.|++|.|...|+. +. .++. ++.|+.||.+++++|.+.|.||+|+||+| +++|++|
T Consensus 232 gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHf 311 (534)
T KOG0358|consen 232 GPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHF 311 (534)
T ss_pred CcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHH
Confidence 89999999999999999999876 22 4778 99999999999999999999999999985 8999999
Q ss_pred HHHcCCeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCC-Cc
Q 000300 415 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT-RL 492 (1705)
Q Consensus 415 L~k~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~-~~ 492 (1705)
|.+.+|+||..|.+.++|.|++.+|+.++.++| +++.+||+++.++...- . ...+++.+.|+.+ ..
T Consensus 312 L~klkimvikdieRediefick~l~c~Pia~id~f~~d~Lg~adlveE~~~------~------G~gkivk~tg~~n~g~ 379 (534)
T KOG0358|consen 312 LAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKLGSADLVEETDS------S------GEGKIVKITGIQNAGR 379 (534)
T ss_pred HHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhcCcchhhhhccc------C------CCccEEEEEEeecCCC
Confidence 999999999999999999999999999999999 99999999998776531 1 1248999999987 68
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 493 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 493 gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
+|||++||++.-+|+|.+|++|||+|+++.|.+.+.+++|||+-+++
T Consensus 380 tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEie 426 (534)
T KOG0358|consen 380 TVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIE 426 (534)
T ss_pred ceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchH
Confidence 99999999999999999999999999999999999999999998775
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.97 E-value=2.6e-30 Score=320.62 Aligned_cols=223 Identities=18% Similarity=0.261 Sum_probs=205.4
Q ss_pred HHHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000300 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 270 l~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
...|.+.+.+++++|... |.+.|++|+++|+..+.++. .+.+|+. .|+|+|++||+..||++++|++|++++. .
T Consensus 138 ~~~l~~i~~t~l~sk~~~-~~~~l~~l~~~a~~~~~~~~--~~~~~~~-~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~ 211 (472)
T cd03341 138 KEEVSKALKTAIASKQYG-NEDFLSPLVAEACISVLPEN--IGNFNVD-NIRVVKILGGSLEDSKVVRGMVFKREPE--G 211 (472)
T ss_pred HHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHhhcc--CCcCChh-HeEEEEecCCCcccceEEeeEEEccccC--C
Confidence 345777888889999875 89999999999999998752 2368884 8999999999999999999999988775 4
Q ss_pred CCccccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCCHH
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLH 429 (1705)
Q Consensus 350 M~~~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK~~ 429 (1705)
|+++++||||+|++++|++ |++||+++++|++.|++||.++||++++++++.
T Consensus 212 ~~~~~~n~~Ili~~~~Le~----------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~ 263 (472)
T cd03341 212 SVKRVKKAKVAVFSCPFDI----------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKF 263 (472)
T ss_pred CceeccCCcEEEEeccccC----------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHH
Confidence 5689999999999999998 899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCC-CceEEEEEeCCCHHHHH
Q 000300 430 RLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT-RLGCTVLLKGSNSDELK 507 (1705)
Q Consensus 430 ~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~-~~gcTILLRG~s~~~L~ 507 (1705)
+|+|||++|||+++++++ ++...||+|+.|++++++. ++|++|+||.. ..+|||+|||++..+++
T Consensus 264 ~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~~TI~lrG~t~~~l~ 330 (472)
T cd03341 264 ELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGD-------------TKVVVFRQNKEDSKIATIVLRGATQNILD 330 (472)
T ss_pred HHHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECC-------------eeEEEEEccCCCCCeEEEEEECCCHHHHH
Confidence 999999999999999999 9999999999999999742 78999999987 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 508 RIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 508 evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
|+||.++||++++++++.++++|+|||+++..
T Consensus 331 E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ 362 (472)
T cd03341 331 DVERAIDDGVNVFKSLTKDGRFVPGAGATEIE 362 (472)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHH
Confidence 99999999999999999999999999999875
No 34
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-30 Score=291.95 Aligned_cols=268 Identities=18% Similarity=0.214 Sum_probs=242.7
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccC
Q 000300 251 KEEKQRAMEKVVSGKF---KAIVSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAA 327 (1705)
Q Consensus 251 ~~~~~~~L~~~~~~h~---~~ll~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~G 327 (1705)
....+++|...+..+- .++.+.||+.+.++|+||......++|+.|+++|+..++.. -|+ +.|.|.|+.|
T Consensus 129 ~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs------~nL-~~IqIIK~~G 201 (527)
T KOG0363|consen 129 TAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGS------TNL-EAIQIIKKLG 201 (527)
T ss_pred HHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCC------CCc-cceeeehhcC
Confidence 3455667777666643 56678899999999999999999999999999999998752 245 4799999999
Q ss_pred CCCCCceEEEeEEEeeccCCCCCCccccCCcEEEEeeecccCccc-------CCc---HHH-HHHHHHHHHHHHHHHhhc
Q 000300 328 GSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRLLLIRGVLGLSSSG-------LSS---FKA-MEQEKDQLKSVMDMIDMC 396 (1705)
Q Consensus 328 Gs~~DS~lI~GVV~~Knvahk~M~~~i~NPRILLL~~~LEy~r~e-------lsS---le~-i~QEkeyL~~lV~rI~~~ 396 (1705)
|++.||++-.|.++.|.+-- +.|++++||||||-+.+++-.|++ +.| +.. -..|++-++.+|+||..+
T Consensus 202 g~l~dSfLDeGFlL~K~igv-~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~h 280 (527)
T KOG0363|consen 202 GKLEDSFLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKH 280 (527)
T ss_pred CccccccccccceeccccCC-CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998864 679999999999999999999887 344 444 578999999999999999
Q ss_pred CCeEEEecccccHHHHHHHHHcCCeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCC
Q 000300 397 HPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGG 475 (1705)
Q Consensus 397 gpnVVLVeksVs~~Al~~L~k~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~ 475 (1705)
|.|+.+...-|.++-.++|..+||+.+.+....-+||++-+||+.|++.+| ....+||+|+.++...+++
T Consensus 281 giN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGe--------- 351 (527)
T KOG0363|consen 281 GINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGE--------- 351 (527)
T ss_pred CCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCc---------
Confidence 999999999999999999999999999999999999999999999999999 9999999999999888765
Q ss_pred CCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 476 KRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 476 k~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
.+++.|.||.-...|||+|||++.++|+|.+|++|||+||+-....|++.+.|||+.++-
T Consensus 352 ----d~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~ 411 (527)
T KOG0363|consen 352 ----DKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEML 411 (527)
T ss_pred ----cceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHH
Confidence 599999999988899999999999999999999999999999999999999999998863
No 35
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.3e-30 Score=297.02 Aligned_cols=260 Identities=19% Similarity=0.233 Sum_probs=235.3
Q ss_pred HHHHHHH-HHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeec
Q 000300 266 FKAIVSQ-LLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKH 344 (1705)
Q Consensus 266 ~~~ll~q-LL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Kn 344 (1705)
+..+-.| |++.+++++++|.+..-.++|+.++++|+..++--..+|...-|-+-|.|.|.+|++..||.++.|+.++..
T Consensus 143 vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~ 222 (545)
T KOG0360|consen 143 VDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCS 222 (545)
T ss_pred hhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeecc
Confidence 3455444 889999999999999999999999999999988655567777777899999999999999999999999999
Q ss_pred cCCCCCCccccCCcEEEEeeecccCccc------CCc---HHH-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHH
Q 000300 345 AAHKHMPTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQES 414 (1705)
Q Consensus 345 vahk~M~~~i~NPRILLL~~~LEy~r~e------lsS---le~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~ 414 (1705)
++...||.+|+|+||++|+|.|.-.+.. +.+ ++. .+.|.+..+..+++|++.|+||||++|+|++++++|
T Consensus 223 ~asq~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~ 302 (545)
T KOG0360|consen 223 VASQMMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKY 302 (545)
T ss_pred HhhhccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHH
Confidence 9999999999999999999999877665 445 444 455677779999999999999999999999999999
Q ss_pred HHHcCCeEeccCCHHHHHHHHHHhCCceecccc-C------CCCCccccceEEEEEeecccccccCCCCCCCceEEEEEc
Q 000300 415 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-L------TSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEG 487 (1705)
Q Consensus 415 L~k~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L------~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeG 487 (1705)
|.++|+++|+++++.+|+|||++|||++++|+- | .+..+|+|+.|.+.+|++ +.++.+.|
T Consensus 303 ~veagamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~d-------------de~ilikg 369 (545)
T KOG0360|consen 303 FVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGD-------------DELILIKG 369 (545)
T ss_pred HHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhccc-------------ceeEEecc
Confidence 999999999999999999999999999999996 5 456799999999999864 78999999
Q ss_pred CCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 488 CPTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 488 c~~~~gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
.+.. .|+|+|||+|...++|++|.+|+++++++..+.++++++||||++.-
T Consensus 370 ~ka~-~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~a 420 (545)
T KOG0360|consen 370 TKAT-SASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETA 420 (545)
T ss_pred Cccc-eeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHH
Confidence 8877 99999999999999999999999999999999999999999999864
No 36
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-29 Score=289.51 Aligned_cols=253 Identities=19% Similarity=0.261 Sum_probs=235.9
Q ss_pred HHHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000300 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 270 l~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
...|+..+.+++.+|...+-.+.+++++++|+..++. ..+.+|+ +.|+|.+..-++..|+.+|+|+|++.+..|..
T Consensus 142 ~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~---~~~~idl-~mveim~mq~~s~~dT~~v~glvLdhg~rHpd 217 (520)
T KOG0359|consen 142 RETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRR---QEEPIDL-FMVEIMEMQHKSLHDTSLVQGLVLDHGARHPD 217 (520)
T ss_pred HHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeecc---CCCCcch-hHHHhhhhccCchhhhHHhhhhhccCCCCCcc
Confidence 4558888999999999999999999999999999983 3456899 59999999999999999999999999999999
Q ss_pred CCccccCCcEEEEeeecccCcccC------Cc---HHH-HHHHHHHHHHHHHHHhhcCC----eEEEecccccHHHHHHH
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSGL------SS---FKA-MEQEKDQLKSVMDMIDMCHP----NVVLVEKTVSRDIQESI 415 (1705)
Q Consensus 350 M~~~i~NPRILLL~~~LEy~r~el------sS---le~-i~QEkeyL~~lV~rI~~~gp----nVVLVeksVs~~Al~~L 415 (1705)
||++++|+-||+++.+|||+|+++ ++ -+. ...|++++.+.|.+|+.++- -||+.||+|++..++.|
T Consensus 218 mp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~ 297 (520)
T KOG0359|consen 218 MPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSL 297 (520)
T ss_pred cccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhh
Confidence 999999999999999999999982 33 334 78999999999999998874 57888999999999999
Q ss_pred HHcCCeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceE
Q 000300 416 LEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGC 494 (1705)
Q Consensus 416 ~k~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gc 494 (1705)
++.||.++++.|+..|||+..+||+..++|+| |++..||+|+.+++.++++ .+|+|+|+|+.+..|
T Consensus 298 a~~gIlaLRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGE-------------EkfTFIE~~~~p~S~ 364 (520)
T KOG0359|consen 298 AKSGILALRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGE-------------EKFTFIEKCNNPSSV 364 (520)
T ss_pred hhcchHHHHHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccc-------------eeeEeeecCCCCcce
Confidence 99999999999999999999999999999999 9999999999999999987 599999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 495 TVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 495 TILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
|||+||+|.+.+..+|.+++|++.+++|.+.+..+++|+||++-.
T Consensus 365 TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va 409 (520)
T KOG0359|consen 365 TILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVA 409 (520)
T ss_pred EEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHH
Confidence 999999999999999999999999999999999999999998864
No 37
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-27 Score=296.90 Aligned_cols=245 Identities=20% Similarity=0.206 Sum_probs=225.1
Q ss_pred HhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEee-ccCCCCCC-c
Q 000300 275 KSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKK-HAAHKHMP-T 352 (1705)
Q Consensus 275 ~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~K-nvahk~M~-~ 352 (1705)
+.+.+++++|....+ +.|++|+++|+..|..... |+ +.|++.|..||...|+.+++|++|+| .+.|..|| +
T Consensus 142 ~~~~t~v~sk~~~~~-~~i~~lv~~Av~~v~~~~~-----d~-~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~ 214 (524)
T COG0459 142 KIAITSVASKSANSD-EEIGELVVEAVEKVGKEQS-----DL-DGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDK 214 (524)
T ss_pred hhhhheeeeeeccCh-HHHHHHHHHHHHHhccccc-----cc-CCeEEEEecCCCccceEEEeeEEecCCccCCCCCCcc
Confidence 346677888888888 9999999999999986431 66 58999999999999999999999999 99999999 8
Q ss_pred cccCCcEEEEeeecccCccc------CC---cHHH-HHHHH-HHHHHHHHHHhhcCCe-EEEecccccHHHHHHHHHcCC
Q 000300 353 EYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEK-DQLKSVMDMIDMCHPN-VVLVEKTVSRDIQESILEKGM 420 (1705)
Q Consensus 353 ~i~NPRILLL~~~LEy~r~e------ls---Sle~-i~QEk-eyL~~lV~rI~~~gpn-VVLVeksVs~~Al~~L~k~gI 420 (1705)
.++||+|||++++|++.+.. +. .+.. .++|+ ++|..+|.+|...+.| ||+++++|+++|++||.+.+|
T Consensus 215 ~~e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~I 294 (524)
T COG0459 215 RLENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAI 294 (524)
T ss_pred ccccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcc
Confidence 99999999999999999876 22 2555 67888 9999999999999999 999999999999999999999
Q ss_pred eEeccCCHHHH-HHHHHHhCCceecccc-CCCCCccc--cceEEEEEeecccccccCCCCCCCceEEEEEcCCC--CceE
Q 000300 421 TLVFDMKLHRL-ERVARCTGSPILSSGS-LTSQKLKH--CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT--RLGC 494 (1705)
Q Consensus 421 tvv~nVK~~~L-eRIAR~TGA~IvsSid-L~~~~LG~--C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffeGc~~--~~gc 494 (1705)
.++++|+.++| +||+++|||.+++.++ ++...+|. |+.++..++++ ..+.+|++|.. ...|
T Consensus 295 lt~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~-------------~~~~~~~~~~~~~~~~~ 361 (524)
T COG0459 295 LTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGD-------------YDMEKLQERKAKAGGVA 361 (524)
T ss_pred eecceecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccc-------------hhhhhhhhhhhcCCCeE
Confidence 99999999999 8999999999999999 99999999 99999998754 57899999985 7789
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 495 TVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 495 TILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
||+|||+++.+++|.||.++|||+++++++.|+.+++|||+.+..
T Consensus 362 tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~ 406 (524)
T COG0459 362 TILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIE 406 (524)
T ss_pred EEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHH
Confidence 999999999999999999999999999999999999999999975
No 38
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.9e-24 Score=251.67 Aligned_cols=232 Identities=19% Similarity=0.203 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCCCccccCCcEEEEeeeccc
Q 000300 289 WVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRLLLIRGVLGL 368 (1705)
Q Consensus 289 W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~M~~~i~NPRILLL~~~LEy 368 (1705)
-.+++++|+.+|+..+.|. + .|+++ .|+|+||.||.+.+|+++.|+||+..+. +-+++-+.+||++.+||++.
T Consensus 171 ~ed~l~~lVa~ac~si~p~---~-~Fnvd-nIrVcKi~Gg~l~~S~Vv~GmVfkr~~e--G~v~~ak~arvAvf~cP~d~ 243 (537)
T KOG0362|consen 171 NEDFLTKLVAKACVSILPL---M-SFNVD-NIRVCKILGGGLEDSCVVCGMVFKRDPE--GEVKSAKDARVAVFACPFDI 243 (537)
T ss_pred hHHHHHHHHHHHHHhhccc---c-ccccc-ceEEEEEecCCcccceeeEEEEeccccC--CcccccccceeEEEecCCCc
Confidence 4789999999999999986 1 28885 8999999999999999999999998876 45588889999999999999
Q ss_pred Cccc------CCcHH---H-HHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCCHHHHHHHHHHh
Q 000300 369 SSSG------LSSFK---A-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCT 438 (1705)
Q Consensus 369 ~r~e------lsSle---~-i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK~~~LeRIAR~T 438 (1705)
.+++ +.+.+ . -+.|+..++.+|+.|...|++||++.+.|.+++++||.+.+|+|++--++-+|.|++|..
T Consensus 244 ~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtv 323 (537)
T KOG0362|consen 244 AQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTV 323 (537)
T ss_pred ccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHc
Confidence 8887 44444 3 477888899999999999999999999999999999999999999999999999999999
Q ss_pred CCceecccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEE-EcCCCCceEEEEEeCCCHHHHHHHHHHHHHH
Q 000300 439 GSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI-EGCPTRLGCTVLLKGSNSDELKRIKSVVQCA 516 (1705)
Q Consensus 439 GA~IvsSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ff-eGc~~~~gcTILLRG~s~~~L~evKrvl~da 516 (1705)
||.+++.+- +..+.||+|+++.++.++. .+++.| .+|......||+|||++...|+.+||+++++
T Consensus 324 GA~~l~rl~~P~~~~lG~~d~V~~~EiG~-------------~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddg 390 (537)
T KOG0362|consen 324 GATALPRLFPPAPEELGYCDSVSTQEIGD-------------TLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDG 390 (537)
T ss_pred CCccchhccCCCCccccccceeeeeecCC-------------ceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHh
Confidence 999999999 8999999999999999754 355555 5566778999999999999999999999999
Q ss_pred HHHHHHHhhcCeEeecCCcccccC
Q 000300 517 VVMAYHLILETSFLVDQRAMFSTI 540 (1705)
Q Consensus 517 v~vvy~l~lE~sfl~ggGa~~~~~ 540 (1705)
+.+++.+....++++|.||++..+
T Consensus 391 V~tyK~l~~d~rLlpGagatEieL 414 (537)
T KOG0362|consen 391 VNTYKALCSDSRLLPGAGATEIEL 414 (537)
T ss_pred HHHhhhhccCCccccCCchhHHHH
Confidence 999999999999999999999863
No 39
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.91 E-value=3.4e-23 Score=260.22 Aligned_cols=221 Identities=15% Similarity=0.210 Sum_probs=192.5
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC-
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH- 349 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~- 349 (1705)
+.|++.+.+++ .+.+.|++|+++|+..+.++ + .|.|++..| ...+|++++|++|++.+.|..
T Consensus 141 ~~l~~va~ts~------~~~~~ls~lv~~Av~~v~~~---g-------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~ 203 (542)
T PRK00013 141 EEIAQVATISA------NGDEEIGKLIAEAMEKVGKE---G-------VITVEESKG-FETELEVVEGMQFDRGYLSPYF 203 (542)
T ss_pred HHHHHHHHhcc------cchHHHHHHHHHHHHHhCcC---C-------cEEEEEcCC-CCceEEEEEeEEecCCcccccc
Confidence 34667666643 37889999999999988642 1 378998887 888999999999999999885
Q ss_pred ------CCccccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcC----
Q 000300 350 ------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG---- 419 (1705)
Q Consensus 350 ------M~~~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~g---- 419 (1705)
|++.++||+||++++.|. +. +.+..++++|.+.|++|||++++|++.|+++|..++
T Consensus 204 ~~~~~~~~~~~~n~~Ilv~d~~i~-------~~-------~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~ 269 (542)
T PRK00013 204 VTDPEKMEAELENPYILITDKKIS-------NI-------QDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGT 269 (542)
T ss_pred cccccCCeEEEecCEEEEEcCccC-------CH-------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCccc
Confidence 488999999999999652 22 224577999999999999999999999999999997
Q ss_pred --CeEeccCC-----HHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEE
Q 000300 420 --MTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE 486 (1705)
Q Consensus 420 --Itvv~nVK-----~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffe 486 (1705)
|.+|++++ +.+|+|||++|||.+++ +++ ++..+||+|+.|++.. ++++||+
T Consensus 270 ~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~ 333 (542)
T PRK00013 270 LKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK----------------DNTTIVD 333 (542)
T ss_pred ceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec----------------CEEEEEe
Confidence 99999887 88999999999999999 788 8888899999999864 5889999
Q ss_pred cCCCCc-----------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEee
Q 000300 487 GCPTRL-----------------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLV 531 (1705)
Q Consensus 487 Gc~~~~-----------------------------------gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ 531 (1705)
||..+. .|||+|||+|+.+++|+||.++||++++++++.+. ||+
T Consensus 334 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~Vp 412 (542)
T PRK00013 334 GAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVP 412 (542)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccc
Confidence 998765 78999999999999999999999999999999995 999
Q ss_pred cCCccccc
Q 000300 532 DQRAMFST 539 (1705)
Q Consensus 532 ggGa~~~~ 539 (1705)
||||++..
T Consensus 413 GGGa~e~~ 420 (542)
T PRK00013 413 GGGVALLR 420 (542)
T ss_pred CcHHHHHH
Confidence 99999875
No 40
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.91 E-value=4.1e-23 Score=259.53 Aligned_cols=220 Identities=15% Similarity=0.207 Sum_probs=187.7
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCC-ceEEEeEEEeeccCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQ-SQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~D-S~lI~GVV~~Knvahk~ 349 (1705)
+.|++.+.+++ .+.+.|++|+++|+..+.++ + ++.|+ .||...| +++++|++|++.+.|..
T Consensus 141 ~~l~~va~ts~------~~~~~l~~lv~~Av~~v~~~---g-------~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~ 202 (542)
T PRK12849 141 EEIAQVATISA------NGDEEIGELIAEAMEKVGKD---G-------VITVE--ESKTLETELEVTEGMQFDRGYLSPY 202 (542)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHHhccC---C-------cEeEE--eCCCcceeEEEEEeEEEecCcccCc
Confidence 34677776643 37789999999999998642 2 23343 6999887 79999999999999874
Q ss_pred -------CCccccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHc----
Q 000300 350 -------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK---- 418 (1705)
Q Consensus 350 -------M~~~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~---- 418 (1705)
|++.++||+|+++++.|. +. +.+..++++|.+.+++|||++++|++.|+++|.++
T Consensus 203 ~~~~~~~~~~~~~n~~Ili~d~~i~-------~~-------~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~ 268 (542)
T PRK12849 203 FVTDPERMEAVLEDPLILLTDKKIS-------SL-------QDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRG 268 (542)
T ss_pred ccccccCceEEeeCcEEEeecCCcC-------CH-------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhc
Confidence 589999999999999542 22 22445789999999999999999999999999999
Q ss_pred --CCeEeccCC-----HHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEE
Q 000300 419 --GMTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485 (1705)
Q Consensus 419 --gItvv~nVK-----~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ff 485 (1705)
||++|++++ +.+|+|||++|||.+++ +++ ++..+||+|+.|++.+ +++++|
T Consensus 269 ~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i 332 (542)
T PRK12849 269 GLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK----------------DNTTIV 332 (542)
T ss_pred cccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee----------------eeEEEE
Confidence 999999887 45599999999999999 577 8888899999999764 478889
Q ss_pred EcCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEe
Q 000300 486 EGCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 530 (1705)
Q Consensus 486 eGc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl 530 (1705)
+||..+ ..|||+|||+|..+|+|+||.++||++++++++.+. ||
T Consensus 333 ~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~V 411 (542)
T PRK12849 333 DGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IV 411 (542)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ee
Confidence 999875 389999999999999999999999999999999995 99
Q ss_pred ecCCccccc
Q 000300 531 VDQRAMFST 539 (1705)
Q Consensus 531 ~ggGa~~~~ 539 (1705)
+||||++..
T Consensus 412 pGGGa~e~~ 420 (542)
T PRK12849 412 PGGGVALLR 420 (542)
T ss_pred cCCCHHHHH
Confidence 999999875
No 41
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.91 E-value=5.1e-23 Score=257.89 Aligned_cols=221 Identities=16% Similarity=0.234 Sum_probs=190.1
Q ss_pred HHHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCC-ceEEEeEEEeeccCCC
Q 000300 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQ-SQIIKGLVFKKHAAHK 348 (1705)
Q Consensus 270 l~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~D-S~lI~GVV~~Knvahk 348 (1705)
..+|++.+.+++++ .+.|++|+++|+..+.++ + .|.| .+||+..| +++++|++|.+.+.|.
T Consensus 138 ~~~l~~va~ts~~~------~~~l~~lv~~A~~~v~~~---~-------~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~ 199 (520)
T cd03344 138 KEEIAQVATISANG------DEEIGELIAEAMEKVGKD---G-------VITV--EEGKTLETELEVVEGMQFDRGYLSP 199 (520)
T ss_pred HHHHHHHHHHhcCC------hHHHHHHHHHHHHHhccC---C-------cEEE--EeCCCcceeEEEEeeEEecCCCCCC
Confidence 34577888887653 688999999999988642 1 2334 58999999 7999999999999887
Q ss_pred CC-------CccccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCC-
Q 000300 349 HM-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM- 420 (1705)
Q Consensus 349 ~M-------~~~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gI- 420 (1705)
.| +.+++||+|++++++|... +.+..++++|.+.+++|||++++|++.|+++|.++||
T Consensus 200 ~~~~~~~~~~~~~~n~~Ili~d~~l~~~--------------~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~ 265 (520)
T cd03344 200 YFVTDPEKMEVELENPYILLTDKKISSI--------------QELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLR 265 (520)
T ss_pred ccccCcccCeEEeeCCEEEEECCCCCCH--------------HHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCc
Confidence 65 4689999999999996322 1245578999999999999999999999999999999
Q ss_pred -----eEeccC-----CHHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEE
Q 000300 421 -----TLVFDM-----KLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMF 484 (1705)
Q Consensus 421 -----tvv~nV-----K~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~f 484 (1705)
.+|+.+ ++++|+|||++|||.+++ +++ +....||+|+.|++.+ ++++|
T Consensus 266 ~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~ 329 (520)
T cd03344 266 GGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK----------------DDTTI 329 (520)
T ss_pred cCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee----------------ceEEE
Confidence 887765 899999999999999999 777 7878899999999876 47899
Q ss_pred EEcCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeE
Q 000300 485 IEGCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSF 529 (1705)
Q Consensus 485 feGc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sf 529 (1705)
|+||..+ ..|||+|||+|+.+++|+||.++||++++++++.+. |
T Consensus 330 i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~ 408 (520)
T cd03344 330 IGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-I 408 (520)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 9999765 589999999999999999999999999999999995 9
Q ss_pred eecCCccccc
Q 000300 530 LVDQRAMFST 539 (1705)
Q Consensus 530 l~ggGa~~~~ 539 (1705)
|+||||++..
T Consensus 409 VpGGGa~e~~ 418 (520)
T cd03344 409 VPGGGVALLR 418 (520)
T ss_pred CcCCcHHHHH
Confidence 9999999875
No 42
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.90 E-value=9.8e-23 Score=257.12 Aligned_cols=220 Identities=12% Similarity=0.181 Sum_probs=189.7
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCc-eEEEeEEEeeccCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQS-QIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS-~lI~GVV~~Knvahk~ 349 (1705)
.+|++.+.+++. +.+.|++|+++|+..+.++ | .|.++.||+..|| ++++|++|.+...|..
T Consensus 153 ~~l~~va~ts~~------~~~~l~~li~eAv~~vg~~---g---------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~ 214 (555)
T PTZ00114 153 EDILNVATISAN------GDVEIGSLIADAMDKVGKD---G---------TITVEDGKTLEDELEVVEGMSFDRGYISPY 214 (555)
T ss_pred HHHHHHHHHHcC------ChHHHHHHHHHHHHHhCcC---C---------cEEEcCCCCccceEEEEEEEEEeccccccc
Confidence 457777777643 3568999999999988642 1 2888999999999 7999999999999876
Q ss_pred -------CCccccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcC---
Q 000300 350 -------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG--- 419 (1705)
Q Consensus 350 -------M~~~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~g--- 419 (1705)
|+..++||+||+++++|+.. +.+..++++|.+.+.+|||++++|++.|+++|..++
T Consensus 215 ~~~~~~~~~~~l~~~~Ili~d~~L~~~--------------~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g 280 (555)
T PTZ00114 215 FVTNEKTQKVELENPLILVTDKKISSI--------------QSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRG 280 (555)
T ss_pred cccccccCeEEecCCEEEEEcCCCCCH--------------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCC
Confidence 48899999999999998831 126677889999999999999999999999999886
Q ss_pred ---CeEecc-----CCHHHHHHHHHHhCCceeccc------c-CCCCCccccceEEEEEeecccccccCCCCCCCceEEE
Q 000300 420 ---MTLVFD-----MKLHRLERVARCTGSPILSSG------S-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMF 484 (1705)
Q Consensus 420 ---Itvv~n-----VK~~~LeRIAR~TGA~IvsSi------d-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~f 484 (1705)
|.+|++ +++.+|+|||++|||.++++. + ++...||+|+.|++.+ ..+++
T Consensus 281 ~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~----------------~~~~~ 344 (555)
T PTZ00114 281 GLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK----------------DETVI 344 (555)
T ss_pred ceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe----------------ceEEE
Confidence 999976 788999999999999999998 5 6677899999999987 24556
Q ss_pred EEcCC-----------------------------------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeE
Q 000300 485 IEGCP-----------------------------------TRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSF 529 (1705)
Q Consensus 485 feGc~-----------------------------------~~~gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sf 529 (1705)
|+||. .+..|||+|||+|+.+|+|+||.++||++++++++.+. |
T Consensus 345 ~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-v 423 (555)
T PTZ00114 345 LTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-I 423 (555)
T ss_pred EeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-c
Confidence 66665 56799999999999999999999999999999999866 9
Q ss_pred eecCCccccc
Q 000300 530 LVDQRAMFST 539 (1705)
Q Consensus 530 l~ggGa~~~~ 539 (1705)
|+||||++..
T Consensus 424 VpGGGa~e~~ 433 (555)
T PTZ00114 424 VPGGGVALLR 433 (555)
T ss_pred ccCCcHHHHH
Confidence 9999999875
No 43
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.90 E-value=1.3e-22 Score=255.14 Aligned_cols=221 Identities=15% Similarity=0.227 Sum_probs=190.6
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC-
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH- 349 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~- 349 (1705)
..|++.+.+++ .+.+.|++|+++|+..+.++ + .|.|.+.. |...++++++|++|.+...|..
T Consensus 142 ~~l~~va~~s~------~~~~~l~~lv~~Av~~vg~~---g-------~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~ 204 (541)
T PRK12851 142 AEIAQVATISA------NGDAEIGRLVAEAMEKVGNE---G-------VITVEESK-TAETELEVVEGMQFDRGYLSPYF 204 (541)
T ss_pred HHHHHHHHHhc------cChHHHHHHHHHHHHHhccc---C-------ceEEEEcc-CCCcceEEEEEEEecCCcccccc
Confidence 33555555532 47889999999999998642 1 35677766 6778999999999999999984
Q ss_pred ------CCccccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCC---
Q 000300 350 ------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM--- 420 (1705)
Q Consensus 350 ------M~~~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gI--- 420 (1705)
|+++++||+||+++++++ ++ +.+..++++|.+.+++|||++++|++.|+++|..+||
T Consensus 205 ~~~~~~~~~~~~~~~Ilv~d~~i~-------~~-------~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~ 270 (541)
T PRK12851 205 VTDADKMEAELEDPYILIHEKKIS-------NL-------QDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGG 270 (541)
T ss_pred ccCCCCCeEEecccEEEEEcCCcC-------cH-------HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCc
Confidence 999999999999999854 22 1266789999999999999999999999999999997
Q ss_pred ---eEecc-----CCHHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEE
Q 000300 421 ---TLVFD-----MKLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE 486 (1705)
Q Consensus 421 ---tvv~n-----VK~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffe 486 (1705)
.+|++ +++.+|+|||++|||.+++ +++ ++...||+|+.|++.+ ++++||+
T Consensus 271 ~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~ 334 (541)
T PRK12851 271 LKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK----------------ENTTIID 334 (541)
T ss_pred eeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc----------------ceEEEEc
Confidence 78885 9999999999999999999 677 7778899999998876 4889999
Q ss_pred cCCCCc-----------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEee
Q 000300 487 GCPTRL-----------------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLV 531 (1705)
Q Consensus 487 Gc~~~~-----------------------------------gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ 531 (1705)
||..+. .|||+|||+|..+++|+||.++||++++++++.+. ||+
T Consensus 335 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~Vp 413 (541)
T PRK12851 335 GAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVP 413 (541)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccc
Confidence 997653 78999999999999999999999999999999995 999
Q ss_pred cCCccccc
Q 000300 532 DQRAMFST 539 (1705)
Q Consensus 532 ggGa~~~~ 539 (1705)
||||++..
T Consensus 414 GGGa~e~~ 421 (541)
T PRK12851 414 GGGVALLR 421 (541)
T ss_pred CchHHHHH
Confidence 99999875
No 44
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.90 E-value=1.7e-22 Score=253.54 Aligned_cols=220 Identities=15% Similarity=0.221 Sum_probs=187.5
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCC-CCceEEEeEEEeeccCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR-NQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~-~DS~lI~GVV~~Knvahk~ 349 (1705)
.+|++.+.++. .+.+.|++++++|+..+.++ + .|.|+. ||.. .+|++++|++|++.+.|..
T Consensus 140 ~~l~~va~ts~------~~~~~l~~lv~~A~~~v~~~---~-------~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~ 201 (524)
T TIGR02348 140 KEIAQVATISA------NNDEEIGSLIAEAMEKVGKD---G-------VITVEE--SKSLETELEVVEGMQFDRGYISPY 201 (524)
T ss_pred HHHHHHHHHhc------cChHHHHHHHHHHHHHhCcC---C-------cEeeec--CCCccccEEEEEeEEEcCCCCCcc
Confidence 45677777643 35789999999999988653 2 233443 6666 6699999999999999886
Q ss_pred C-------CccccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHc----
Q 000300 350 M-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK---- 418 (1705)
Q Consensus 350 M-------~~~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~---- 418 (1705)
| ++.++||+||++++.|.- . +.+..++++|.+.|++|||++++|++.|+++|..+
T Consensus 202 ~~~~~~~~~~~~~n~~Ili~d~~i~~-------~-------~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~ 267 (524)
T TIGR02348 202 FVTDAEKMEVELENPYILITDKKISN-------I-------KDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRG 267 (524)
T ss_pred cccCccCCeEEeeCceeeeccCCcCC-------H-------HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhccc
Confidence 5 888999999999996431 1 12577899999999999999999999999999986
Q ss_pred --CCeEeccCCH-----HHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEE
Q 000300 419 --GMTLVFDMKL-----HRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485 (1705)
Q Consensus 419 --gItvv~nVK~-----~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ff 485 (1705)
||.+|++++. .+|+|||++|||.+++ +++ ++...||+|+.|++.. +++++|
T Consensus 268 ~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i 331 (524)
T TIGR02348 268 TLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK----------------DNTTIV 331 (524)
T ss_pred ccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee----------------cEEEEE
Confidence 8999988854 7999999999999999 888 8888999999999865 478999
Q ss_pred EcCCCCc-----------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEe
Q 000300 486 EGCPTRL-----------------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 530 (1705)
Q Consensus 486 eGc~~~~-----------------------------------gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl 530 (1705)
+||..+. .+||+|||+|..+++|+||.++||++++++++.+. ||
T Consensus 332 ~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~V 410 (524)
T TIGR02348 332 EGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IV 410 (524)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-Cc
Confidence 9987654 68899999999999999999999999999999996 99
Q ss_pred ecCCccccc
Q 000300 531 VDQRAMFST 539 (1705)
Q Consensus 531 ~ggGa~~~~ 539 (1705)
+||||++..
T Consensus 411 pGGGa~e~~ 419 (524)
T TIGR02348 411 PGGGVALLR 419 (524)
T ss_pred cCCcHHHHH
Confidence 999999875
No 45
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.89 E-value=5.1e-22 Score=249.99 Aligned_cols=222 Identities=14% Similarity=0.232 Sum_probs=188.6
Q ss_pred HHHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000300 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 270 l~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
.++|++.+.+++.+ .+.|++|+++|+..+.++ + .+|+. ..+..| .++++++|++|++.+.|..
T Consensus 141 ~~~l~~va~~s~~~------~~~l~~lv~eAv~~vg~~---g-~i~v~----~~~~~g---~~~~~v~G~~~~~g~~~p~ 203 (544)
T PRK12850 141 SKEIAQVATISANG------DESIGEMIAEAMDKVGKE---G-VITVE----EAKTLG---TELDVVEGMQFDRGYLSPY 203 (544)
T ss_pred HHHHHHHHHHhcCC------HHHHHHHHHHHHHHhccc---C-ceeeE----EccccC---cceEEEEeEEecCccCcCc
Confidence 34577777775443 578999999999998642 2 34443 223444 6899999999999999976
Q ss_pred C-------CccccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCC--
Q 000300 350 M-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM-- 420 (1705)
Q Consensus 350 M-------~~~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gI-- 420 (1705)
| ++.++||+||++++.|. ++ +.+..++++|...|++|||++++|++.|+++|.++||
T Consensus 204 ~~~~~~~~~~~~~n~~Ill~d~~i~-------~~-------~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~ 269 (544)
T PRK12850 204 FVTNPEKMRAELEDPYILLHEKKIS-------NL-------QDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRG 269 (544)
T ss_pred cccccccCeEEEeCCEEEEEecccC-------CH-------HHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcc
Confidence 4 88999999999999642 22 2378889999999999999999999999999999999
Q ss_pred ----eEecc-----CCHHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEE
Q 000300 421 ----TLVFD-----MKLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485 (1705)
Q Consensus 421 ----tvv~n-----VK~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ff 485 (1705)
.+|++ +++.+|+|||++|||.+++ +++ ++...||+|+.|++.. +++++|
T Consensus 270 ~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i 333 (544)
T PRK12850 270 GLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK----------------ENTTII 333 (544)
T ss_pred cceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe----------------eeEEEE
Confidence 99887 9999999999999999999 677 7878899999998775 478999
Q ss_pred EcCCCCc-----------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEe
Q 000300 486 EGCPTRL-----------------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 530 (1705)
Q Consensus 486 eGc~~~~-----------------------------------gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl 530 (1705)
+||..+. .|||+|||+|+.+++|+||.++||++++++++.+ .||
T Consensus 334 ~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~-g~V 412 (544)
T PRK12850 334 DGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEE-GIV 412 (544)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhc-CCc
Confidence 9998753 7999999999999999999999999999999999 599
Q ss_pred ecCCccccc
Q 000300 531 VDQRAMFST 539 (1705)
Q Consensus 531 ~ggGa~~~~ 539 (1705)
+||||++..
T Consensus 413 pGGGa~e~~ 421 (544)
T PRK12850 413 PGGGVALLR 421 (544)
T ss_pred cCCcHHHHH
Confidence 999999875
No 46
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.88 E-value=2.2e-21 Score=244.64 Aligned_cols=220 Identities=16% Similarity=0.211 Sum_probs=187.4
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCC-CCceEEEeEEEeeccCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR-NQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~-~DS~lI~GVV~~Knvahk~ 349 (1705)
.+|++.+.+++.+ .+.|++|+++|+..|.++ + .|.|.. ||.. .++.+++|++|++...+..
T Consensus 142 ~~l~~va~~s~~~------~~~l~~li~eA~~~vg~~---g-------~i~v~~--g~~~~~~~~~v~G~~~~~g~~~p~ 203 (545)
T PRK12852 142 AEIAQVGTISANG------DAAIGKMIAQAMQKVGNE---G-------VITVEE--NKSLETEVDIVEGMKFDRGYLSPY 203 (545)
T ss_pred HHHHHHHhhhcCC------hHHHHHHHHHHHHHhccC---C-------ceeeec--CCCcceEEEEEEeEEecCCccCCc
Confidence 4567777665433 478999999999999753 2 233432 7776 7999999999999999874
Q ss_pred -------CCccccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHc----
Q 000300 350 -------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK---- 418 (1705)
Q Consensus 350 -------M~~~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~---- 418 (1705)
|+..++||+|+|+++.|. +. +++..+++.|.+.+++|||+.++|++.|+++|..+
T Consensus 204 ~v~~~~~~~~~l~n~~Ili~d~~i~-------~~-------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~ 269 (545)
T PRK12852 204 FVTNAEKMTVELDDAYILLHEKKLS-------GL-------QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRG 269 (545)
T ss_pred cccccccceEEecCceEEEecCccC-------CH-------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccc
Confidence 999999999999987542 11 36777899999999999999999999999999875
Q ss_pred --CCeEeccCC-----HHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEE
Q 000300 419 --GMTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485 (1705)
Q Consensus 419 --gItvv~nVK-----~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ff 485 (1705)
||++|++.+ +.+|+|||++|||.+++ +++ ++...||+|+.|++.+ +.+++|
T Consensus 270 ~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~----------------~~~~~i 333 (545)
T PRK12852 270 GLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK----------------ENTTIV 333 (545)
T ss_pred cceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc----------------cEEEEE
Confidence 899999665 99999999999999999 677 8888899999998876 377889
Q ss_pred EcCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEe
Q 000300 486 EGCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 530 (1705)
Q Consensus 486 eGc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl 530 (1705)
+||..+ ..|||+|||+|+.+++|+||.++||++++++++.+. ||
T Consensus 334 ~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~V 412 (545)
T PRK12852 334 NGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IV 412 (545)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 998763 679999999999999999999999999999999995 99
Q ss_pred ecCCccccc
Q 000300 531 VDQRAMFST 539 (1705)
Q Consensus 531 ~ggGa~~~~ 539 (1705)
+||||++..
T Consensus 413 pGGGa~e~~ 421 (545)
T PRK12852 413 PGGGVALLR 421 (545)
T ss_pred cCchHHHHH
Confidence 999999875
No 47
>CHL00093 groEL chaperonin GroEL
Probab=99.86 E-value=7.7e-21 Score=238.96 Aligned_cols=222 Identities=15% Similarity=0.206 Sum_probs=181.7
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS~lI~GVV~~Knvahk~M 350 (1705)
.+|++.+.+++ .+.+.|++|+++|+..|.++ | .+|+ + -.+|...++++++|++|++...|..|
T Consensus 141 ~~L~~VA~ts~------~~~~~l~~lv~eAv~~vg~~---g-~i~~------~-~g~~~~~~~~~v~G~~~~~g~~~p~f 203 (529)
T CHL00093 141 QAITQVASISA------GNDEEVGSMIADAIEKVGRE---G-VISL------E-EGKSTVTELEITEGMRFEKGFISPYF 203 (529)
T ss_pred HHHHHHHHHhc------cChHHHHHHHHHHHHHhccC---C-ceee------c-CCCccceeeEEEeeEEecCccCcCcc
Confidence 34666666643 37889999999999999642 2 2333 1 12345677899999999999998765
Q ss_pred ---Cc----cccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHH--HH----
Q 000300 351 ---PT----EYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESI--LE---- 417 (1705)
Q Consensus 351 ---~~----~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L--~k---- 417 (1705)
++ .++||+|++++++|++.+ ..+..++++|...+.++|+++++|++.|+.+| .+
T Consensus 204 v~~~k~~~~~l~n~~Ili~d~~le~~~-------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~ 270 (529)
T CHL00093 204 VTDTERMEVVQENPYILLTDKKITLVQ-------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGI 270 (529)
T ss_pred ccCCccceEEecCceehhhcCCCCchH-------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhccc
Confidence 44 599999999999999762 34788889999999999999999999555554 77
Q ss_pred cCCeEeccC-----CHHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEE
Q 000300 418 KGMTLVFDM-----KLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE 486 (1705)
Q Consensus 418 ~gItvv~nV-----K~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ffe 486 (1705)
.||.+|+++ ++.+|+|||++|||.+++ +++ ++..+||+|+.+++.+ +++++|+
T Consensus 271 ~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~~~ 334 (529)
T CHL00093 271 VNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK----------------DSTTIIA 334 (529)
T ss_pred ceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec----------------CEEEEEe
Confidence 599999998 448899999999999999 687 8888899999999875 4678887
Q ss_pred c---------CCCC-------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeec
Q 000300 487 G---------CPTR-------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVD 532 (1705)
Q Consensus 487 G---------c~~~-------------------------~gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~g 532 (1705)
+ |... ..|||+|||+|+.+++|.||.++||++++++++.+. +|+|
T Consensus 335 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpG 413 (529)
T CHL00093 335 DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPG 413 (529)
T ss_pred cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccC
Confidence 5 3321 377899999999999999999999999999999995 9999
Q ss_pred CCccccc
Q 000300 533 QRAMFST 539 (1705)
Q Consensus 533 gGa~~~~ 539 (1705)
||+++..
T Consensus 414 GGa~e~~ 420 (529)
T CHL00093 414 GGATLVH 420 (529)
T ss_pred CcHHHHH
Confidence 9999875
No 48
>PRK14104 chaperonin GroEL; Provisional
Probab=99.85 E-value=4.1e-20 Score=232.78 Aligned_cols=220 Identities=16% Similarity=0.199 Sum_probs=184.3
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCC-CCceEEEeEEEeeccCCCC
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR-NQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~-~DS~lI~GVV~~Knvahk~ 349 (1705)
++|++.+.++..++ +.|++|+++|+..+.++ | .|.|..+ +.. .++.+++|++|++.+.|..
T Consensus 142 ~~l~~va~~s~~~d------~~i~~lv~~Av~~vg~~---g-------~i~v~~~--~~~~~~~~~~~G~~~~~g~~~p~ 203 (546)
T PRK14104 142 DEIAQVGTISANGD------AEIGKFLADAMKKVGNE---G-------VITVEEA--KSLETELDVVEGMQFDRGYISPY 203 (546)
T ss_pred HHHHHHHHHHhcCc------hHHHHHHHHHHHHhccC---C-------ceeeEec--ccccceEEEEEEEEEeCCCCCcc
Confidence 45677777755443 56999999999988642 2 3445544 445 5899999999999999885
Q ss_pred C-------CccccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHH-----
Q 000300 350 M-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILE----- 417 (1705)
Q Consensus 350 M-------~~~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k----- 417 (1705)
| +..++||+|++.+.. +.++ +.+..++++|...+.+|||++++|++.|+++|..
T Consensus 204 ~~~~~~~~~~~~~~~~Ilv~d~~-------i~~~-------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~ 269 (546)
T PRK14104 204 FVTNADKMRVEMDDAYILINEKK-------LSSL-------NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRG 269 (546)
T ss_pred hhcCcccCceeeeCcEEEEehhh-------hcCH-------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccc
Confidence 5 778899999999722 3333 2367889999999999999999999999999984
Q ss_pred -cCCeEeccCC-----HHHHHHHHHHhCCceecc-----cc-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEE
Q 000300 418 -KGMTLVFDMK-----LHRLERVARCTGSPILSS-----GS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485 (1705)
Q Consensus 418 -~gItvv~nVK-----~~~LeRIAR~TGA~IvsS-----id-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~~~Ktl~ff 485 (1705)
.||.+|++++ +.+|+|||++|||.++++ ++ ++...||+|+.+++.. +.+++|
T Consensus 270 ~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~----------------~~~~~i 333 (546)
T PRK14104 270 GLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDK----------------ENTTIV 333 (546)
T ss_pred eeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcC----------------CEEEEE
Confidence 6899998777 899999999999999999 77 8888899999988521 578889
Q ss_pred EcCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEe
Q 000300 486 EGCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 530 (1705)
Q Consensus 486 eGc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl 530 (1705)
+||..+ ..+||+|||+|+.+++|+||.++||++++++++.+. |+
T Consensus 334 ~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~V 412 (546)
T PRK14104 334 NGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IV 412 (546)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cC
Confidence 999875 789999999999999999999999999999999996 99
Q ss_pred ecCCccccc
Q 000300 531 VDQRAMFST 539 (1705)
Q Consensus 531 ~ggGa~~~~ 539 (1705)
+|||+++..
T Consensus 413 pGGGa~e~~ 421 (546)
T PRK14104 413 PGGGVALLR 421 (546)
T ss_pred cCchHHHHH
Confidence 999999875
No 49
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.84 E-value=2.4e-20 Score=236.28 Aligned_cols=230 Identities=17% Similarity=0.202 Sum_probs=186.2
Q ss_pred HHHHHhhcccCCCCCchhHHHHHHHHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCc-eEEEeEEEeeccCCC-
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQS-QIIKGLVFKKHAAHK- 348 (1705)
Q Consensus 271 ~qLL~~~~~slssK~~~~W~~~ls~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS-~lI~GVV~~Knvahk- 348 (1705)
.+|++.+.++++ +.+.|++|+++|+..|.++ | .+++ -.||+..|+ ++++|++|++...|.
T Consensus 196 ~~L~~vA~tS~~------~~~~i~~liaeAv~~Vg~~---g-~i~v--------~~g~s~~dsl~~v~G~~~d~g~~spy 257 (600)
T PLN03167 196 SELADVAAVSAG------NNYEVGNMIAEAMSKVGRK---G-VVTL--------EEGKSAENNLYVVEGMQFDRGYISPY 257 (600)
T ss_pred HHHHHHHHHhcc------CcHHHHHHHHHHHHHhccC---C-cEEe--------ccCCCccceeEEEEEEEecCCccCcc
Confidence 457777777553 3458999999999999642 2 2222 269999998 899999999999988
Q ss_pred ------CCCccccCCcEEEEeeecccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHH------
Q 000300 349 ------HMPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESIL------ 416 (1705)
Q Consensus 349 ------~M~~~i~NPRILLL~~~LEy~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~------ 416 (1705)
+|+..++||+|||+++.|. +.+ .+..++++|...++++|++.++|++.|+++|.
T Consensus 258 fvt~~~~m~~~l~np~Ill~d~~i~-------~~~-------~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g 323 (600)
T PLN03167 258 FVTDSEKMSVEYDNCKLLLVDKKIT-------NAR-------DLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRG 323 (600)
T ss_pred cccCcCCCeEEEeCCEEEEEccccC-------CHH-------HHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccc
Confidence 8999999999999997532 222 12224467788999999999999999999999
Q ss_pred HcCCeEeccCC-----HHHHHHHHHHhCCceec-----ccc-CCCCCccccceEEEEE-----eecccccccCCC-CCCC
Q 000300 417 EKGMTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKK-----FVEEHAGFREGG-KRPS 479 (1705)
Q Consensus 417 k~gItvv~nVK-----~~~LeRIAR~TGA~Ivs-----Sid-L~~~~LG~C~~f~v~~-----~~~~~~~~~~g~-k~~~ 479 (1705)
..+|.+|+.++ ...|+|||.+|||.+++ +++ +....||+|+.|++.+ ++.+ |. ....
T Consensus 324 ~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~------~~~~~i~ 397 (600)
T PLN03167 324 SLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDG------STQEAVN 397 (600)
T ss_pred cceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCC------ccHHHHH
Confidence 88999999995 88999999999999999 677 7888899999999987 3221 00 0122
Q ss_pred ceEEEEEcCC------------C------CceEEEE-EeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 480 KTLMFIEGCP------------T------RLGCTVL-LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 480 Ktl~ffeGc~------------~------~~gcTIL-LRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
+.+.+|++|. . +.++||| |||+|..+|+|+||.++||++++++++.+. +|+|||+++..
T Consensus 398 ~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ 475 (600)
T PLN03167 398 KRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLR 475 (600)
T ss_pred HHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHH
Confidence 5777888775 1 1267887 999999999999999999999999999999 99999999875
No 50
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=6.9e-20 Score=207.65 Aligned_cols=143 Identities=18% Similarity=0.240 Sum_probs=138.2
Q ss_pred HHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCCHHHHHHHHHHhCCceecccc-CCCCCccccceEEEEEe
Q 000300 386 LKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKF 464 (1705)
Q Consensus 386 L~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK~~~LeRIAR~TGA~IvsSid-L~~~~LG~C~~f~v~~~ 464 (1705)
...+++.|...|+++++||++.++.|.++|.+++..+|++|..++||-||-+||++|++.+. |++.+||+|+.++..+|
T Consensus 144 f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sf 223 (400)
T KOG0357|consen 144 FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISF 223 (400)
T ss_pred HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEec
Confidence 78899999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 465 VEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 465 ~~~~~~~~~g~k~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
+.. ..+++++|.|++++.+||.+||+|..+.+|+||++|||+||++|++++.++++|||+.+..
T Consensus 224 gtt-----------kdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEis 287 (400)
T KOG0357|consen 224 GTT-----------KDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIS 287 (400)
T ss_pred ccc-----------cceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhh
Confidence 753 4799999999999999999999999999999999999999999999999999999998874
No 51
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=95.38 E-value=0.014 Score=79.40 Aligned_cols=100 Identities=9% Similarity=-0.229 Sum_probs=81.0
Q ss_pred CCCCCCCChhcccceeeecCcEEEEEEEecCccccCCCCCCCcEEEeecCCCCCCCCCCCCCCceEEcccccccccHHHH
Q 000300 781 QCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAACGLSFGKF 860 (1705)
Q Consensus 781 ~C~sC~~pm~~H~r~YvH~~g~ltI~ve~l~~~~~lpge~~~~I~MWs~Ck~C~~~~g~~~sTp~v~MSd~tw~~SFGKf 860 (1705)
.|..|+.||..|++.|+|..- ...-+...+. +++. +.+|.||++|..|+. .+-+ +|...+|++.+|++
T Consensus 658 ~~~~~~~~~~~~lv~~~es~~--~~~~~s~~~~--~~~l-~e~~~~~~~~~~~k~------~~~~-~~~~~~~~~~~~~~ 725 (1598)
T KOG0230|consen 658 LSSYSKGPKQNGLVPAHESVL--NDLHESTLSI--LSKL-PETRSGTHEGNEDKG------PGLE-PELANNQNIQRPEE 725 (1598)
T ss_pred hhhhcCchhhccccccccccc--cccccccccc--cccc-cchhcccchhccccC------cccc-ccccccccccchhh
Confidence 345688999999999999988 3333333333 5665 358999999999999 5888 99999999999999
Q ss_pred HhhhcCCCCCCCCCCCCCCCccccceeecccCCeE
Q 000300 861 LELSFSHHSSSTRLSSCGHSLHRDFLYFFGLGPMV 895 (1705)
Q Consensus 861 LEL~F~~~~~~~r~~~C~H~l~rDhlryFg~~~~V 895 (1705)
+|-. ....+.+...|.|.+---|.|+| +.++|
T Consensus 726 ~e~~--~s~~~~~~~~HQsilVl~ss~~~-~k~~~ 757 (1598)
T KOG0230|consen 726 TEEQ--SSKDALDPSSHQSILVLFSSRSV-LKGSV 757 (1598)
T ss_pred hhhh--hcccCCCccccceeEEEEeeeee-ccCCc
Confidence 9998 44456677889999999999999 88887
No 52
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=88.47 E-value=2.6 Score=53.49 Aligned_cols=217 Identities=14% Similarity=0.150 Sum_probs=124.8
Q ss_pred HHHHHHhhcccCCCCCCCccCcccCeEEEEccCCCCCCc-eEEEeEEEeeccCCC-------CCCccccCCcEEEEeeec
Q 000300 295 SLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQS-QIIKGLVFKKHAAHK-------HMPTEYKNPRLLLIRGVL 366 (1705)
Q Consensus 295 ~L~~eAv~~V~pd~~~gd~mDi~~yVKIKKI~GGs~~DS-~lI~GVV~~Knvahk-------~M~~~i~NPRILLL~~~L 366 (1705)
.+.-+|+..|.++- -|.|+ -|....|. +++.|+=|++....+ .+...++||.++|..-.
T Consensus 173 ~li~~a~~kvG~~G----------VItv~--~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kk- 239 (550)
T KOG0356|consen 173 NLISDAMKKVGRKG----------VITVK--DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKK- 239 (550)
T ss_pred HHHHHHHHHhCcCC----------eEEee--cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhh-
Confidence 36667777776521 12222 24455443 678888888765542 33445566666554322
Q ss_pred ccCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEecccccHHHHHHHHHcCCeEe-----------ccCCHHHHHHHH
Q 000300 367 GLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLV-----------FDMKLHRLERVA 435 (1705)
Q Consensus 367 Ey~r~elsSle~i~QEkeyL~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv-----------~nVK~~~LeRIA 435 (1705)
+.+=+..+.-+-......+|=||+. ..|+..|+..|.=.+--+. .+-+...|.+||
T Consensus 240 ------------i~~v~~ivp~LE~A~~~~~PLliIA-eDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Dia 306 (550)
T KOG0356|consen 240 ------------ISSVQSIVPALELALAKRRPLLIIA-EDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIA 306 (550)
T ss_pred ------------hhHHHHHhHHHHHhhhccCceEEEe-hhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHH
Confidence 2222222333333334456655555 5688888887763332221 334567899999
Q ss_pred HHhCCceecc------cc-CCCCCccccceEEEEEeecccccccCCCCC-------CCc------eEEEEEc-CC----C
Q 000300 436 RCTGSPILSS------GS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKR-------PSK------TLMFIEG-CP----T 490 (1705)
Q Consensus 436 R~TGA~IvsS------id-L~~~~LG~C~~f~v~~~~~~~~~~~~g~k~-------~~K------tl~ffeG-c~----~ 490 (1705)
-+|||.++.. ++ ....+||+|+.+.+-+- +...+.+.+.+. ..+ +..+-.. .. .
T Consensus 307 i~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd-~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ 385 (550)
T KOG0356|consen 307 ILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKD-DTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAK 385 (550)
T ss_pred HHhhhhhhccchhhcccccCchhhcCcceeEEEecC-cceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Confidence 9999998843 23 45688999999888762 101010000000 000 0001110 00 0
Q ss_pred --CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeEeecCCccccc
Q 000300 491 --RLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 491 --~~gcTILLRG~s~~~L~evKrvl~dav~vvy~l~lE~sfl~ggGa~~~~ 539 (1705)
.-.++|-+-|.++-++++-|-.+.||+.+.++. .|..+++|||+.+..
T Consensus 386 ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aa-veeGivpGGG~all~ 435 (550)
T KOG0356|consen 386 LSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAA-VEEGIVPGGGTALLR 435 (550)
T ss_pred hcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHH-hhcCcccCCchHHHH
Confidence 123566667999999999999999999988877 567799999988753
No 53
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=48.73 E-value=40 Score=32.93 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=38.2
Q ss_pred HHHHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCCHHHHHHHHHH
Q 000300 388 SVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARC 437 (1705)
Q Consensus 388 ~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK~~~LeRIAR~ 437 (1705)
.+++.|...++++|+|. +|..-+...|.++||.++.....+.-+.|.+.
T Consensus 44 ~~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~~~~~i~~~l~~~ 92 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQGAGGDIEEALEAY 92 (94)
T ss_dssp HHHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEESTSSBHHHHHHHH
T ss_pred hHHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEcCCCCHHHHHHHH
Confidence 34556677899999985 58999999999999999998666555555443
No 54
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=47.08 E-value=40 Score=37.10 Aligned_cols=51 Identities=22% Similarity=0.474 Sum_probs=35.7
Q ss_pred HHHHhhcCCeEEEecccccHHHHHHHHHcCCeE-eccCC--H----HHHHHHHHHhCC
Q 000300 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTL-VFDMK--L----HRLERVARCTGS 440 (1705)
Q Consensus 390 V~rI~~~gpnVVLVeksVs~~Al~~L~k~gItv-v~nVK--~----~~LeRIAR~TGA 440 (1705)
+++|++++|||||....-..-..+.|.+.||.+ +.... . ..++.+++.+|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 457899999999986655554667899999954 44332 2 246677777765
No 55
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=40.93 E-value=40 Score=40.15 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=40.2
Q ss_pred HHHHhhcCCeEEEecccccHHHHHHHHHcCCeEecc-C-C----HHHHHHHHHHhCCc
Q 000300 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFD-M-K----LHRLERVARCTGSP 441 (1705)
Q Consensus 390 V~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~n-V-K----~~~LeRIAR~TGA~ 441 (1705)
+++|++++||+||+....+....+.|.+.||.|+.- . . ...++.+++.+|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 568999999999998888777788899999987632 2 1 23478888888854
No 56
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=40.84 E-value=49 Score=32.90 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCC
Q 000300 387 KSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK 427 (1705)
Q Consensus 387 ~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK 427 (1705)
..+++.|...++++|+|. ++..-+++.|.++||.++.-..
T Consensus 53 ~~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 53 GKAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred hHHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 446666777999999995 6999999999999999997766
No 57
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.35 E-value=54 Score=37.65 Aligned_cols=52 Identities=13% Similarity=0.362 Sum_probs=38.3
Q ss_pred HHHHhhcCCeEEEecccccH-HHHHHHHHcCCeEeccC--C----HHHHHHHHHHhCCc
Q 000300 390 MDMIDMCHPNVVLVEKTVSR-DIQESILEKGMTLVFDM--K----LHRLERVARCTGSP 441 (1705)
Q Consensus 390 V~rI~~~gpnVVLVeksVs~-~Al~~L~k~gItvv~nV--K----~~~LeRIAR~TGA~ 441 (1705)
+++|++++|||||+...-.. ...+.|.+.||.++..- . ...++.|++.+|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 56889999999999755444 34788999999876532 2 33478888888875
No 58
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=39.20 E-value=51 Score=40.87 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=38.0
Q ss_pred HHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCC---H----HHHHHHHHHhCCc
Q 000300 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK---L----HRLERVARCTGSP 441 (1705)
Q Consensus 390 V~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK---~----~~LeRIAR~TGA~ 441 (1705)
+++|++++|||||+...-.....+.|.+.||.|+.--. . ..++.|++.+|-.
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 67899999999999755555567889999999865321 1 3456777777653
No 59
>PLN02667 inositol polyphosphate multikinase
Probab=35.20 E-value=61 Score=39.24 Aligned_cols=45 Identities=7% Similarity=0.222 Sum_probs=29.3
Q ss_pred HHHHHHhhhhccccC---CcccccceeeeecCC--------ceEEEeEEeeecccC
Q 000300 1590 LQRAVWNDTTFLNSI---DVMDYSLLVGVDSQR--------RELVCGIIDYLRQYT 1634 (1705)
Q Consensus 1590 L~~~l~~Dt~FL~~~---nvMDYSLLvGv~~~~--------~~l~vGIID~Lr~Yt 1634 (1705)
++++|..=-.+++.+ .+.-=|||+..|... ..+-|=+|||=+.+.
T Consensus 195 iL~qL~~L~~~fe~q~~~rfysSSLLivYDg~~~~~~~~~~~~v~VkmIDFAH~~~ 250 (286)
T PLN02667 195 ILAQLLELKSWFEEQTLYHFFSASILIVYEGEAILKGNPEDSRVEVKLVDFAHVLD 250 (286)
T ss_pred HHHHHHHHHHHHHhCCceEEEEeEEEEEEcCCccccccCCCCcceEEEEeCccccC
Confidence 455555544555554 333349999887642 458899999998754
No 60
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=34.53 E-value=67 Score=37.04 Aligned_cols=50 Identities=10% Similarity=0.203 Sum_probs=36.4
Q ss_pred HHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCC----HHHHHHHHHHhCC
Q 000300 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK----LHRLERVARCTGS 440 (1705)
Q Consensus 390 V~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK----~~~LeRIAR~TGA 440 (1705)
+++|++++||+||+...... ..+.|.+.|.+++.... ...+++|++.+|.
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~ 112 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNK 112 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCc
Confidence 46889999999999877666 66778888877654431 3456777777765
No 61
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=34.05 E-value=76 Score=31.41 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=33.1
Q ss_pred HHHHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCC
Q 000300 388 SVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK 427 (1705)
Q Consensus 388 ~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK 427 (1705)
....-+...++++|+|.+ |..-|+..|.++||.++.-..
T Consensus 52 ~~~~~l~~~~v~~vi~~~-iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 52 LAARLLALEGCDAVLVGG-IGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHHCCCcEEEEcc-cCccHHHHHHHcCCEEEEcCC
Confidence 345556678999999975 999999999999999997766
No 62
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.20 E-value=1.3e+02 Score=32.10 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=55.8
Q ss_pred EEeCHHHHHHHHHHcCCChHHHHHHhccCC---------------cCC-CCCCCcce----eEEEecCCcEEE-------
Q 000300 1393 KCLYANQFRDLRSRCCPSELAYIDSLSRCR---------------NWD-AKGGKSKS----FFVKTLDDRFII------- 1445 (1705)
Q Consensus 1393 ~~y~p~~F~~LR~~~gi~e~~fi~SLs~~~---------------~~~-~sgGKSGs----~F~~T~D~rFII------- 1445 (1705)
.+|-...|..+-+..++++.++...+..-. +|. ...||||. .||+..+.-|.+
T Consensus 2 rifkt~~F~r~akk~~~sd~~L~~ai~el~~G~~~adLGGgv~K~Ria~~g~GKsGG~R~I~~~~~~~~~~~l~~y~K~~ 81 (120)
T PF06296_consen 2 RIFKTKWFKRWAKKEGLSDDDLCEAIEELEQGLIDADLGGGVRKKRIARKGKGKSGGYRVIYFFKQEDRIFFLYIYAKNE 81 (120)
T ss_pred ceeecHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccchhccEEEEEeccCCCCCCCceEEEEEEEeCCEEEEEEEEcccc
Confidence 467778999999999999988876654311 232 34699996 455555555544
Q ss_pred -EecCHHHHHHHHHHHHHHHHHHhh
Q 000300 1446 -KEIKKTEFDSFDKFALHYFKYMNE 1469 (1705)
Q Consensus 1446 -Ktis~~E~~~f~~~lp~Yf~y~~~ 1469 (1705)
-.|+..|++.|.+++..|.++-.+
T Consensus 82 ~~nis~~El~~lk~la~~l~~~~~~ 106 (120)
T PF06296_consen 82 KANISDKELKALKKLAKELLNLSEE 106 (120)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 246899999999999999988665
No 63
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=27.28 E-value=1.5e+02 Score=31.70 Aligned_cols=52 Identities=8% Similarity=0.097 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCCHHHHHHHHHHhCC
Q 000300 388 SVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGS 440 (1705)
Q Consensus 388 ~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK~~~LeRIAR~TGA 440 (1705)
.+.+-|++.|+|+|+| ..|.+-|..+|.++||-+..-....+=+.|-....+
T Consensus 56 ~~a~~l~~~gvdvvi~-~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 56 RIAELLVDEGVDVVIA-SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHHcCCCEEEE-CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 4567788999999998 679999999999999999987775555555555443
No 64
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=26.69 E-value=1.2e+02 Score=35.13 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=36.8
Q ss_pred HHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCC--HH----HHHHHHHHhCCc
Q 000300 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK--LH----RLERVARCTGSP 441 (1705)
Q Consensus 390 V~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK--~~----~LeRIAR~TGA~ 441 (1705)
+++|++++||+||+.........+.|.+.+..++.... .. .++.+++.+|..
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~ 115 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKE 115 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcH
Confidence 45789999999999887766555667777666666553 33 467777777653
No 65
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=26.61 E-value=95 Score=37.14 Aligned_cols=12 Identities=17% Similarity=0.094 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHH
Q 000300 287 ESWVDIVTSLSW 298 (1705)
Q Consensus 287 ~~W~~~ls~L~~ 298 (1705)
..|.+.|..++.
T Consensus 224 v~~Ld~L~~~~~ 235 (275)
T PF13324_consen 224 VAQLDKLLDLCQ 235 (275)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 355555554433
No 66
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=25.74 E-value=1.2e+02 Score=34.50 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=38.5
Q ss_pred HHHhhcCCeEEEecccc-cHHHHHHHHHcCCeEeccCCH-------HHHHHHHHHhCCc
Q 000300 391 DMIDMCHPNVVLVEKTV-SRDIQESILEKGMTLVFDMKL-------HRLERVARCTGSP 441 (1705)
Q Consensus 391 ~rI~~~gpnVVLVeksV-s~~Al~~L~k~gItvv~nVK~-------~~LeRIAR~TGA~ 441 (1705)
++|++++||+||..... ..-....+.+.||.++.--.. ..++.|++.+|..
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 78899999999998888 666777788999988754432 3678888888875
No 67
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=23.33 E-value=1.2e+02 Score=35.71 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=34.3
Q ss_pred HHHHhhcCCeEEEeccc-ccHHHHHHHHHcCCeEeccC--CH----HHHHHHHHHhCC
Q 000300 390 MDMIDMCHPNVVLVEKT-VSRDIQESILEKGMTLVFDM--KL----HRLERVARCTGS 440 (1705)
Q Consensus 390 V~rI~~~gpnVVLVeks-Vs~~Al~~L~k~gItvv~nV--K~----~~LeRIAR~TGA 440 (1705)
+++|++++|||||+..+ -..-..+.|.+.||.++.-- .. ..++.+++.+|.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999998643 23445677899999887531 11 235566666654
No 68
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=22.61 E-value=1.9e+02 Score=35.69 Aligned_cols=56 Identities=9% Similarity=0.152 Sum_probs=46.5
Q ss_pred HHHHHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCCHHHHHHHHHHhCCcee
Q 000300 387 KSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPIL 443 (1705)
Q Consensus 387 ~~lV~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK~~~LeRIAR~TGA~Iv 443 (1705)
..+++.|+..+|.+|+...+....+ +.|.++||.++..|..-..-+.+.-.|++++
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~P~~~-~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGRPDQA-RALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCChHHH-HHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 3567777889999999988877764 7799999999999987777777888898877
No 69
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=22.46 E-value=51 Score=36.46 Aligned_cols=52 Identities=25% Similarity=0.370 Sum_probs=29.8
Q ss_pred EEEEeCHHHH---HHHHHHcCCChHHHHHHhccCCcCCCCCCCcceeEEEecCCcEEEEec
Q 000300 1391 SVKCLYANQF---RDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEI 1448 (1705)
Q Consensus 1391 ~~~~y~p~~F---~~LR~~~gi~e~~fi~SLs~~~~~~~sgGKSGs~F~~T~D~rFIIKti 1448 (1705)
.++-|||.-= ..|..+..+.|-+=+.|.. -+.|+-+++||.|.|.||||=.-
T Consensus 101 avkkYyP~TTnld~~lK~RlnL~EgDPViS~G------Dt~GRRaALFYRtSdEr~ill~S 155 (230)
T PF12226_consen 101 AVKKYYPGTTNLDQQLKDRLNLTEGDPVISMG------DTTGRRAALFYRTSDERYILLFS 155 (230)
T ss_dssp TEEEB-GGG--S-HHHHHHHT--TT-EEEEEE------ETT--EEEEEEETTTTEEEEEEE
T ss_pred hhhhcCCCCccHHHHHHHhhccccCCceeeec------CCCCceEEEEEeccCceEEEEEc
Confidence 3667777422 2566666655544333332 25699999999999999998543
No 70
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=22.21 E-value=1.6e+02 Score=34.41 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=34.6
Q ss_pred HHHHhhcCCeEEEecccccHHHHHHHHHcCCeEeccCC-------HHHHHHHHHHhCCc
Q 000300 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK-------LHRLERVARCTGSP 441 (1705)
Q Consensus 390 V~rI~~~gpnVVLVeksVs~~Al~~L~k~gItvv~nVK-------~~~LeRIAR~TGA~ 441 (1705)
+++|++++|||||+...-.....+++..++|.++.--. ...++.+++++|-.
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGKE 123 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCcH
Confidence 46789999999998765555556666666766554211 12477778887753
No 71
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=21.21 E-value=72 Score=31.98 Aligned_cols=43 Identities=19% Similarity=0.456 Sum_probs=30.9
Q ss_pred hcccCCCCCCCCChhcccceeeecCcEEEEEEEecCccccCCCCCCCcEEEeecCCCCCCCCCCCCCCceEEc
Q 000300 776 LNQRKQCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVI 848 (1705)
Q Consensus 776 ~~~~~~C~sC~~pm~~H~r~YvH~~g~ltI~ve~l~~~~~lpge~~~~I~MWs~Ck~C~~~~g~~~sTp~v~M 848 (1705)
..+.|.|+.|+.+ .| ++.. -.|| .|.+|+....-+..||.+++
T Consensus 32 ~~~~~~Cp~C~~~--~V---------------kR~a----------~GIW---~C~kCg~~fAGgay~P~t~~ 74 (89)
T COG1997 32 QRAKHVCPFCGRT--TV---------------KRIA----------TGIW---KCRKCGAKFAGGAYTPVTPA 74 (89)
T ss_pred HhcCCcCCCCCCc--ce---------------eeec----------cCeE---EcCCCCCeeccccccccchH
Confidence 5788999999997 22 2221 2488 59999987766777886665
No 72
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=21.00 E-value=55 Score=27.97 Aligned_cols=32 Identities=31% Similarity=0.836 Sum_probs=19.0
Q ss_pred cccccccccccchHHHHhhhccccccccCCCceeeeeecccccc
Q 000300 4 MCHHCGAELTRVKKEERKQENGKSLKLNNEGSIWSCRICGEKQE 47 (1705)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (1705)
.|.+|+|-|-. -.+.+..|..|.|.||+.+.+
T Consensus 4 rC~~C~aylNp------------~~~~~~~~~~w~C~~C~~~N~ 35 (40)
T PF04810_consen 4 RCRRCRAYLNP------------FCQFDDGGKTWICNFCGTKNP 35 (40)
T ss_dssp B-TTT--BS-T------------TSEEETTTTEEEETTT--EEE
T ss_pred ccCCCCCEECC------------cceEcCCCCEEECcCCCCcCC
Confidence 47888887743 235666889999999997653
No 73
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.81 E-value=1.2e+02 Score=35.08 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=32.2
Q ss_pred HHHHhhcCCeEEEecccccHH-HHHHHHH-cCCeEeccCC-------HHHHHHHHHHhCC
Q 000300 390 MDMIDMCHPNVVLVEKTVSRD-IQESILE-KGMTLVFDMK-------LHRLERVARCTGS 440 (1705)
Q Consensus 390 V~rI~~~gpnVVLVeksVs~~-Al~~L~k-~gItvv~nVK-------~~~LeRIAR~TGA 440 (1705)
+++|++++||+||+....... ..+.|.+ .||.++.--. ...++.+++.+|.
T Consensus 67 ~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~ 126 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLLGKVLGK 126 (262)
T ss_pred HHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHHHHHhCC
Confidence 468899999999997665541 2344544 8888754322 1235666666664
No 74
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.54 E-value=2e+02 Score=38.42 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=23.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHH
Q 000300 249 KFKEEKQRAMEKVVSGKFKAIVSQLLKSVGVVSSGKDGESWVDI 292 (1705)
Q Consensus 249 ~~~~~~~~~L~~~~~~h~~~ll~qLL~~~~~slssK~~~~W~~~ 292 (1705)
|.+-.....|.+++-..+-..+--||+..=. ...|.-.
T Consensus 373 kCSAAaLDVLanvf~~elL~~l~PlLk~~L~------~~~W~vr 410 (885)
T KOG2023|consen 373 KCSAAALDVLANVFGDELLPILLPLLKEHLS------SEEWKVR 410 (885)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHHHHHHHcC------cchhhhh
Confidence 5666777788887777665555555553333 3578543
No 75
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=20.13 E-value=2.8e+02 Score=29.22 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=42.9
Q ss_pred HhhcCCeEEEecccc------cHHHHHHHHHcCCeEeccCCHHHHHHHHHHhCCc
Q 000300 393 IDMCHPNVVLVEKTV------SRDIQESILEKGMTLVFDMKLHRLERVARCTGSP 441 (1705)
Q Consensus 393 I~~~gpnVVLVeksV------s~~Al~~L~k~gItvv~nVK~~~LeRIAR~TGA~ 441 (1705)
|...+|.+|+|+-++ ++.|.++|.+.|+-|+.---+..|+|.-..-|+.
T Consensus 57 ~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~k 111 (121)
T COG1504 57 LLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGKK 111 (121)
T ss_pred HHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhccc
Confidence 344899999998775 6789999999999999999999999999988874
No 76
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.02 E-value=1e+02 Score=33.88 Aligned_cols=34 Identities=15% Similarity=0.388 Sum_probs=26.6
Q ss_pred HHHHhhcCCeEEEecccccHH-HHHHHHHcCCeEe
Q 000300 390 MDMIDMCHPNVVLVEKTVSRD-IQESILEKGMTLV 423 (1705)
Q Consensus 390 V~rI~~~gpnVVLVeksVs~~-Al~~L~k~gItvv 423 (1705)
+++|++++|||||....-... ..+.|.+.||.++
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv 96 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVL 96 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEE
Confidence 578999999999986655443 7788999998553
Done!