Query 000300
Match_columns 1705
No_of_seqs 327 out of 1776
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 16:29:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000300.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_79-83//hhsearch_pdb/000300hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ybx_A Phosphatidylinositol-5- 1.0 1 1 567.3 22.0 251 1387-1674 74-394 (394)
2 2gk9_A Phosphatidylinositol-4- 1.0 1 1 559.4 16.9 250 1387-1675 66-392 (392)
3 3iyg_G T-complex protein 1 sub 1.0 1 1 399.0 27.3 257 270-539 137-405 (515)
4 3iyg_A T-complex protein 1 sub 1.0 1 1 381.1 26.6 257 270-540 139-413 (529)
5 3aq1_B Thermosome subunit; gro 1.0 1 1 380.6 23.6 258 270-540 101-369 (500)
6 1a6d_B Thermosome (beta subuni 1.0 1 1 379.4 25.0 257 270-540 149-416 (543)
7 1q3q_A Thermosome alpha subuni 1.0 1 1 377.2 25.5 257 270-540 151-418 (548)
8 1a6d_A Thermosome (alpha subun 1.0 1 1 376.4 24.5 257 270-540 148-415 (545)
9 3p9d_F T-complex protein 1 sub 1.0 1 1 376.3 15.0 253 271-539 148-421 (546)
10 3iyg_Z T-complex protein 1 sub 1.0 1 1 375.5 24.3 253 270-540 137-410 (517)
No 1
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=1.00 E-value=1 Score=567.29 Aligned_cols=251 Identities=26% Similarity=0.462 Sum_probs=228.2
Q ss_pred CCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHCCCCCC-CCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 86469999099999999987099968899973137768-88998753018974278379870699999999999999999
Q 000300 1387 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNW-DAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFK 1465 (1705)
Q Consensus 1387 ~~~~~~~~y~p~~F~~LR~~~~~~e~~fi~SLs~~~~~-~~sgGKSgs~F~~T~D~rFIIKtis~~E~~~fl~~lp~Yf~ 1465 (1705)
+.+|+|++|||.+|++||++||+++.+|++||++|..| .++||||||+||+|.|+|||||||++.|+++|+++||.||+
T Consensus 74 p~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~ 153 (394)
T 2ybx_A 74 PSHFKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHNILKKYHQ 153 (394)
T ss_dssp CSEEEEEEESHHHHHHHHHHTTCCHHHHHHHHHSSCCEECC-----CCCEEECTTSSEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 88749999788999999998297999999985478764247899866879981797289996199999999999999999
Q ss_pred HHHHHCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEEEEECCCCCC-CCCEE
Q ss_conf 99620389998200145379996002357887433335863200111010125899911579899983047898-62022
Q 000300 1466 YMNESFDSGNQTCLAKVLGIYQVSWIDCFSPFGILLFVPSCKCLIFLQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQ 1544 (1705)
Q Consensus 1466 yl~~~~~~~~~TlL~ki~Gly~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~g~~~k~~~iVMeNlf~~~-~i~~~ 1544 (1705)
||.++ +++|||+||||+|+|+ + .|+ +.+||||+|+|+++ .|+++
T Consensus 154 ~~~~~---~~~TLL~k~~Gly~v~--------------------------~----~~~--~~~fvVM~Nlf~~~~~i~~~ 198 (394)
T 2ybx_A 154 YIVEC---HGITLLPQFLGMYRLN--------------------------V----DGV--EIYVIVTRNVFSHRLSVYRK 198 (394)
T ss_dssp HHHHT---TTCCSSCCEEEEEEEE--------------------------E----TTE--EEEEEEEECSSCSSSCCSEE
T ss_pred HHHHC---CCCCCHHHHCEEEEEE--------------------------E----CCE--EEEEEEEECCCCCCCCEEEE
T ss_conf 99840---8986766531789999--------------------------8----990--79999993677887642010
Q ss_pred ECCCCCCCCCCCCCCC--CCCCCCCCCCHHCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC----
Q ss_conf 1278852234345678--9985334521000158987010957899999999963520024884233231454148----
Q 000300 1545 YDLKGALHARYNTTVD--GSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQ---- 1618 (1705)
Q Consensus 1545 yDLKGS~~~R~~~~~~--~~~~VLkD~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~---- 1618 (1705)
||||||+++|.+...+ +...||||+||++.. .+|+|+++.|..|++||++||.||+++|||||||||||+..
T Consensus 199 yDLKGS~~~R~~~~~~~~~~~~~LkD~df~~~~--~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGIh~~~~~~ 276 (394)
T 2ybx_A 199 YDLKGSTVAREASDKEKAKELPTLKDNDFINEG--QKIYIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGIHDVERAE 276 (394)
T ss_dssp EEECCSSSCCCCCHHHHTSSSCEECHHHHHHTT--CCCCCCHHHHHHHHHHHHHHHHHHHHTTEESCEEEEEEEEHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCEECCCCHHHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
T ss_conf 020564457766753445676541111367469--819978999999999999999999877876640487773155432
Q ss_pred --------------------------------------------------------------CCEEEEEEEEEECCCCHH
Q ss_conf --------------------------------------------------------------722799598510246814
Q 000300 1619 --------------------------------------------------------------RRELVCGIIDYLRQYTWD 1636 (1705)
Q Consensus 1619 --------------------------------------------------------------~~~l~iGIID~Lr~yt~~ 1636 (1705)
+.+||+|||||||+|||+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyyiGIIDiLq~Y~~~ 356 (394)
T 2ybx_A 277 QEEVECEENDGEEEGESDGTHPVGTPPDSPGNTLNSSPPLAPGEFDPNIDVYGIKCHENSPRKEVYFMAIIXILTHYDAK 356 (394)
T ss_dssp HHHHCC--------------------------------CCCTTCCCTTTSTTEEECCTTCSSCEEEEEEEECCCEESCC-
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCHH
T ss_conf 00002445555433445655445787555344443222236554564443234345557777437999999863107840
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 57999887605799998852492679999999996223
Q 000300 1637 KHLETWVKSSLVPKNVLPTVISPKDYKRRFRKFMSTHF 1674 (1705)
Q Consensus 1637 KklE~~~K~~~~~~~~~pTvv~P~~Y~~RF~~~m~~yf 1674 (1705)
||+|+|+|++..+.+..||||+|++|++||++||+++|
T Consensus 357 KklE~~~Ks~~~~~~~~iS~V~P~~Y~~RF~~fm~~if 394 (394)
T 2ybx_A 357 KKAAHAAKTVKHGAGAEISTVNPEQYSKRFLDFIGHIL 394 (394)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHC
T ss_conf 89999999861589999856998999999999999869
No 2
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=559.37 Aligned_cols=250 Identities=27% Similarity=0.472 Sum_probs=226.6
Q ss_pred CCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 86469999099999999987099968899973137768889987530189742783798706999999999999999999
Q 000300 1387 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKY 1466 (1705)
Q Consensus 1387 ~~~~~~~~y~p~~F~~LR~~~~~~e~~fi~SLs~~~~~~~sgGKSgs~F~~T~D~rFIIKtis~~E~~~fl~~lp~Yf~y 1466 (1705)
+.+|.|++|||.+|++||++||+++.+|++||++|..|. ++|||| +||+|.|+|||||||++.|+++|+++||.||+|
T Consensus 66 p~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~-s~GKSG-~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~~ 143 (392)
T 2gk9_A 66 PSHFKFKEYCPQVFRNLRDRFGIDDQDYLVSLTRNPPSE-SEGSDG-RFLISYDRTLVIKEVSSEDIADMHSNLSNYHQY 143 (392)
T ss_dssp CSSBEEEEESHHHHHHHHHTTTCCHHHHHHHHHSSCCCC-CC------CCCCTTSSEEEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCC-CCCCCC-EEEECCCCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 886499997979999999980989899998743787455-798762-379869986899960999999999999999999
Q ss_pred HHHHCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEEEEECCCCCC-CCCEEE
Q ss_conf 9620389998200145379996002357887433335863200111010125899911579899983047898-620221
Q 000300 1467 MNESFDSGNQTCLAKVLGIYQVSWIDCFSPFGILLFVPSCKCLIFLQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQY 1545 (1705)
Q Consensus 1467 l~~~~~~~~~TlL~ki~Gly~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~g~~~k~~~iVMeNlf~~~-~i~~~y 1545 (1705)
|.++ +++|||+||||+|+|+ + .|+ +.+||||+|+|+++ .|+++|
T Consensus 144 ~~~~---~~~TLL~k~~Gly~v~--------------------------~----~~~--~~~~vVM~Nlf~~~~~i~~~y 188 (392)
T 2gk9_A 144 IVKC---HGNTLLPQFLGMYRVS--------------------------V----DNE--DSYMLVMRNMFSHRLPVHRKY 188 (392)
T ss_dssp HHHT---TSCSSSCCEEEEEECC--------------------------B----SSC--CCEEEEEECSSCSSSCCSCCC
T ss_pred HHHH---CCCCCHHHHCEEEEEE--------------------------E----CCE--EEEEEEEECCCCCCCCEEEEE
T ss_conf 9840---7986556530689999--------------------------8----990--799999936778876410344
Q ss_pred CCCCCCCCCCCCCCCCC--CCCCCCCCHHCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC----
Q ss_conf 27885223434567899--853345210001589870109578999999999635200248842332314541487----
Q 000300 1546 DLKGALHARYNTTVDGS--GDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNSIDVMDYSLLVGVDSQR---- 1619 (1705)
Q Consensus 1546 DLKGS~~~R~~~~~~~~--~~VLkD~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~---- 1619 (1705)
|||||+++|++.+.+.. ..||||+||++.. .+|+|+++.|..|++||++||.||+++|||||||||||+...
T Consensus 189 DLKGS~~~R~~~~~~~~~~~~~LkD~df~~~~--~~i~l~~~~k~~l~~~l~~D~~FL~~~~iMDYSLLvGi~~~~~~~~ 266 (392)
T 2gk9_A 189 DLKGSLVSREASDKEKVKELPTLRDMDFLNKN--QKVYIGEEEKKIFLEKLKRDVEFLVQLKIMDYSLLLGIHDIIRGSE 266 (392)
T ss_dssp EECC-----------------CCBTTC--CCC--CCCCC----CHHHHHHHHHHHHHHHHTTCCCCCEECCCBCC-----
T ss_pred EECCCCCCCCCCCCCCCCCCCEECCCCHHHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
T ss_conf 50565457766752235666611131156259--8698789999999999999999998768766305876631554321
Q ss_pred ----------------------------------------------------------------------CEEEEEEEEE
Q ss_conf ----------------------------------------------------------------------2279959851
Q 000300 1620 ----------------------------------------------------------------------RELVCGIIDY 1629 (1705)
Q Consensus 1620 ----------------------------------------------------------------------~~l~iGIID~ 1629 (1705)
..||+|||||
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyylGIIDi 346 (392)
T 2gk9_A 267 PEEEAPVREDESEVDGDCSLTGPPALVGSYGTSPEGIGGYIHSHRPLGPGEFESFIDVYAIRSAEGAPQKEVYFMGLIDI 346 (392)
T ss_dssp ----------------------------------------------------------------------CBCCCEECCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 12222344555545553323456432245678854533334322223666565444323434555677752799999774
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 0246814579998876057999988524926799999999962234
Q 000300 1630 LRQYTWDKHLETWVKSSLVPKNVLPTVISPKDYKRRFRKFMSTHFL 1675 (1705)
Q Consensus 1630 Lr~yt~~KklE~~~K~~~~~~~~~pTvv~P~~Y~~RF~~~m~~yf~ 1675 (1705)
||+|||+||+|+|+|++..+.+..+|||+|++|++||++||+++|.
T Consensus 347 Lq~Y~~~KklE~~~Ks~~~~~~~~iS~v~P~~Y~~RF~~fm~~~~~ 392 (392)
T 2gk9_A 347 LTQYDAKKKAAHAAKTVKHGAGAEISTVHPEQYAKRFLDFITNIFA 392 (392)
T ss_dssp C---------------------------CHHHHHHHHHHHTC----
T ss_pred EEECCHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHHC
T ss_conf 0008700899999998615789997468989999999999999609
No 3
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=399.01 Aligned_cols=257 Identities=21% Similarity=0.389 Sum_probs=241.3
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999863445789872159999999999983012688889975692368079980289978722798499930468899
Q 000300 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 270 l~qLL~~~~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~gd~mDi~~yVKIKkI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
...|++.+.+++++|..+.|.+.+++++++|+..|.++......+|+.+||+|+|++||++.||++|+|++|+|.+.|++
T Consensus 137 ~~~l~~va~tsl~sK~i~~~~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~ 216 (515)
T 3iyg_G 137 RDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPR 216 (515)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCC
T ss_conf 99999999987148752557999999999999842335688854564230589983699801016884179827878988
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------CC---CHHH-HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 97412597399995305657656------77---5777-89999999999977740698099955653099999999849
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1705)
Q Consensus 350 Mp~~i~nPRILLL~~~LEy~r~~------ls---Sle~-i~QEkeyL~~lV~rI~~~~pnVVLVeksVs~~Ale~L~~~g 419 (1705)
||++++||||||++|+|||++.+ ++ ++.+ +++|++|++++|++|++.||+||+++++|+++|++||.++|
T Consensus 217 m~~~ien~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~ 296 (515)
T 3iyg_G 217 MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRAN 296 (515)
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 86144410799981555444234674289678999999999999999999999994799899978866789999998789
Q ss_pred CEEECCCCHHHHHHHHHHHCCCEECCCC-CCCCCCCC-CCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEE
Q ss_conf 8475169978999999995994611356-89998311-322999993123445447998897259999858999658999
Q 000300 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKH-CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVL 497 (1705)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~-C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc~~~~gcTIL 497 (1705)
|++++++++.+|+|||++|||.|+++++ +++..||+ |+.|++.++++ ++|+||+||+++.+|||+
T Consensus 297 I~av~~~~k~~leria~~tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~-------------~~~~~i~g~~~~~~~TIl 363 (515)
T 3iyg_G 297 ITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGD-------------EYFTFITECKDPKACTIL 363 (515)
T ss_pred CEEECCCCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCCCEEEEEEECC-------------CEEEEEECCCCCCEEEEE
T ss_conf 5666667889999999995992642102367666287562899999878-------------169999578888768999
Q ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCC
Q ss_conf 807999899999999999999999975429075069701236
Q 000300 498 LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 498 LRG~s~~~L~evKrvl~dai~vvy~l~lE~sfL~ggGa~~~~ 539 (1705)
|||+|+.+|+|+||+++||+++++++..++.+++||||++..
T Consensus 364 lrG~t~~~l~E~er~i~Dal~~~r~~~~~~~ivpGGGa~e~~ 405 (515)
T 3iyg_G 364 LRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMA 405 (515)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHH
T ss_conf 848988999999999999999999996289689378899999
No 4
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=381.12 Aligned_cols=257 Identities=18% Similarity=0.237 Sum_probs=237.6
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCC
Q ss_conf 999998634457898721599999999999830126888899-7569236807998028997872279849993046889
Q 000300 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK 348 (1705)
Q Consensus 270 l~qLL~~~~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~g-d~mDi~~yVKIKkI~GGs~~DS~lI~GVV~~Knvahk 348 (1705)
...|++.+.++++||....|.+.|++|+++|+..|.+...+| ..+|+. +|+|++++||++.||++|+|++|+|.+.|+
T Consensus 139 ~e~l~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~g~~~~dv~-~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~ 217 (529)
T 3iyg_A 139 RDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVN-SINVLKAHGRSQMESMLINGYALNCVVGSQ 217 (529)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-EEEEEEECCCCCCCEEEEEEEEEECCCCCC
T ss_conf 8999999999856675532078999999999999751244787666544-179999559885543899616874586435
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCC------CC---CHHH-HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 997412597399995305657656------77---5777-8999999999997774069809995565309999999984
Q 000300 349 HMPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 418 (1705)
Q Consensus 349 ~Mp~~i~nPRILLL~~~LEy~r~~------ls---Sle~-i~QEkeyL~~lV~rI~~~~pnVVLVeksVs~~Ale~L~~~ 418 (1705)
.||++++||||++++|+|+|++.+ +. .++. .++|++|++.++++|++.|+|||+++++|++.|++||.++
T Consensus 218 ~m~~~ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~ 297 (529)
T 3iyg_A 218 GMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEA 297 (529)
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHC
T ss_conf 68751688669996277654535678549968999999999999999999999999549989998788778999999986
Q ss_pred CCEEECCCCHHHHHHHHHHHCCCEECCCC-CC------CCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 98475169978999999995994611356-89------998311322999993123445447998897259999858999
Q 000300 419 GMTLVFDMKLHRLERVARCTGSPILSSGS-LT------SQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTR 491 (1705)
Q Consensus 419 gItvv~nVK~~~LeRIAR~TGA~IisSid-L~------~~~LG~C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc~~~ 491 (1705)
||++++++++.+|+|||++|||.|+++++ +. +.+||+|+.|++++++. ++|+||+||+.+
T Consensus 298 gI~av~~v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~ 364 (529)
T 3iyg_A 298 GAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICD-------------DELILIKNTKAR 364 (529)
T ss_pred CCCEECCCCHHHHHHHHHHHCCEEECCHHCCCCHHCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCC
T ss_conf 9803634798889999998599566140104531005763376543899998679-------------539999757998
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 6589998079998999999999999999999754290750697012368
Q 000300 492 LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1705)
Q Consensus 492 ~gcTILLRG~s~~~L~evKrvl~dai~vvy~l~lE~sfL~ggGa~~~~~ 540 (1705)
.+|||+|||+++.+|+|+||+++||++++++++.++++++||||++...
T Consensus 365 ~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~l 413 (529)
T 3iyg_A 365 TSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAAL 413 (529)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHH
T ss_conf 6589997786277999999999999999999963890884786799999
No 5
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=1.00 E-value=1 Score=380.61 Aligned_cols=258 Identities=22% Similarity=0.361 Sum_probs=240.6
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999863445789872159999999999983012688889975692368079980289978722798499930468899
Q 000300 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 270 l~qLL~~~~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~gd~mDi~~yVKIKkI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
...|++.+.++++||....|.+.|++|+++|+..|.++......+|+.++|+|+|++||+..||++++|++|+|.+.|+.
T Consensus 101 ~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~ 180 (500)
T 3aq1_B 101 EAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPN 180 (500)
T ss_dssp HHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEESSCGGGCEEESEEEESCCCSSTT
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCC
T ss_conf 78999999998623113555789999999999996133468744451122799983589800117882269940578899
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------C---CCHHH-HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 97412597399995305657656------7---75777-89999999999977740698099955653099999999849
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1705)
Q Consensus 350 Mp~~i~nPRILLL~~~LEy~r~~------l---sSle~-i~QEkeyL~~lV~rI~~~~pnVVLVeksVs~~Ale~L~~~g 419 (1705)
||++++||||||++++|||++.+ + .+++. +++|++|++.++++|+..|++||+++++|++.|++||.++|
T Consensus 181 m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~ 260 (500)
T 3aq1_B 181 MPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAG 260 (500)
T ss_dssp SCSEEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTT
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 85443598799993776666544632476489999999999999999999999997493999987776779999998789
Q ss_pred CEEECCCCHHHHHHHHHHHCCCEECCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 8475169978999999995994611356-899983113229999931234454479988972599998589996589998
Q 000300 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498 (1705)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc~~~~gcTILL 498 (1705)
|++++++++.+|+|||++|||.++++++ ++...||+|+.|++.+++. ++|+||+||+.+..|||+|
T Consensus 261 I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~l 327 (500)
T 3aq1_B 261 IYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRG-------------GKMTYVTGCQNSKAVTVLL 327 (500)
T ss_dssp CEEECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSS-------------SEEEEEEEETTCCCEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------EEEEEEECCCCCCEEEEEE
T ss_conf 899972799999999998499574560118986788760899998457-------------6899997788875699993
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 079998999999999999999999754290750697012368
Q 000300 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1705)
Q Consensus 499 RG~s~~~L~evKrvl~dai~vvy~l~lE~sfL~ggGa~~~~~ 540 (1705)
||+++.+|+|+||+++||++++++++.++++|+||||++...
T Consensus 328 rG~t~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~ 369 (500)
T 3aq1_B 328 HGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVEL 369 (500)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 589677999999999989999999997888788872999999
No 6
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=1.00 E-value=1 Score=379.39 Aligned_cols=257 Identities=21% Similarity=0.332 Sum_probs=240.9
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999863445789872159999999999983012688889975692368079980289978722798499930468899
Q 000300 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 270 l~qLL~~~~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~gd~mDi~~yVKIKkI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
...|++.+.++++||....|.+.|++|+++|+..|.++....+.+|+ ++|+|+|++||+..||++++|++|+|.+.|+.
T Consensus 149 ~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~ 227 (543)
T 1a6d_B 149 KALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDF-DNIQVVKKQGGAIDDTQLINGIIVDKEKVHPG 227 (543)
T ss_dssp HHHHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECG-GGEEEEEEESSCGGGCEEESEEEESCCCSSTT
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC-CEEEEEEECCCCCCCEEEECCEEEECCCCCCC
T ss_conf 79999999998525424454779999999999984533368744334-44899983689812226873489831778888
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------C---CCHHH-HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 97412597399995305657656------7---75777-89999999999977740698099955653099999999849
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1705)
Q Consensus 350 Mp~~i~nPRILLL~~~LEy~r~~------l---sSle~-i~QEkeyL~~lV~rI~~~~pnVVLVeksVs~~Ale~L~~~g 419 (1705)
||++++||||||++++|||++.+ + .+++. +++|++|++.++++|+..|++||+++++|++.|++||.++|
T Consensus 228 m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~ 307 (543)
T 1a6d_B 228 MPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAG 307 (543)
T ss_dssp SCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTT
T ss_pred CCCEECCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 75331387699992455644345774389688999999999999999999999997299899988886889999998789
Q ss_pred CEEECCCCHHHHHHHHHHHCCCEECCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 8475169978999999995994611356-899983113229999931234454479988972599998589996589998
Q 000300 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498 (1705)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc~~~~gcTILL 498 (1705)
|++++++++.+|+|||++|||.|+++++ ++...||+|+.|++++++. ++|+||+||+.+.+|||+|
T Consensus 308 I~av~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~l 374 (543)
T 1a6d_B 308 IYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGE-------------DYMTFVTGCKNPKAVSILV 374 (543)
T ss_dssp CEEECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETT-------------EEEEEEEEESSSSCEEEEE
T ss_pred EEEECCCCHHHHHHHHHHHCCCEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEE
T ss_conf 668646899999999998299265551449987788763899999668-------------1499996688875599996
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 079998999999999999999999754290750697012368
Q 000300 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1705)
Q Consensus 499 RG~s~~~L~evKrvl~dai~vvy~l~lE~sfL~ggGa~~~~~ 540 (1705)
||+++.+|+|+||+++||++++++++.++++++||||++...
T Consensus 375 rG~t~~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~ 416 (543)
T 1a6d_B 375 RGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEI 416 (543)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 579777999999999999999999997888167864999999
No 7
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=1.00 E-value=1 Score=377.23 Aligned_cols=257 Identities=24% Similarity=0.389 Sum_probs=240.7
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999863445789872159999999999983012688889975692368079980289978722798499930468899
Q 000300 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 270 l~qLL~~~~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~gd~mDi~~yVKIKkI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
...|++.+.++++||....|.+.|++|+++|+..|.++......+|+ ++|+|+|++||+..||++++|++|+|.+.|+.
T Consensus 151 ~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~ 229 (548)
T 1q3q_A 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDL-DNIKFEKKAGEGVEESELVRGVVIDKEVVHPR 229 (548)
T ss_dssp HHHHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCG-GGEEEEEEEBSCGGGCEEESSEEESCCCSSTT
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC-CEEEEEEECCCCCCCEEEEEEEEEECCCCCCC
T ss_conf 89999999987503002455579999999999984434578754557-73899994489830238971089841577899
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------CC---CHHH-HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 97412597399995305657656------77---5777-89999999999977740698099955653099999999849
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1705)
Q Consensus 350 Mp~~i~nPRILLL~~~LEy~r~~------ls---Sle~-i~QEkeyL~~lV~rI~~~~pnVVLVeksVs~~Ale~L~~~g 419 (1705)
||++++||||||++++|||++.+ ++ +++. +++|++|++.++++|++.|++||+++++|++.|++||.++|
T Consensus 230 m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~ 309 (548)
T 1q3q_A 230 MPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYG 309 (548)
T ss_dssp SCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTT
T ss_pred CCCEECCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 85651488799992676754346784399688999999999999999999999998596999986785889999999879
Q ss_pred CEEECCCCHHHHHHHHHHHCCCEECCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 8475169978999999995994611356-899983113229999931234454479988972599998589996589998
Q 000300 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498 (1705)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc~~~~gcTILL 498 (1705)
|++++++++.+|+|||++|||.++++++ ++...||+|+.|++.+++. ++|+||+||+.+..|||+|
T Consensus 310 I~av~~~~k~~le~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~l 376 (548)
T 1q3q_A 310 IMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAG-------------ENMIFVEGCKNPKAVTILI 376 (548)
T ss_dssp CEEECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETT-------------EEEEEEECCSSCSSEEEEE
T ss_pred CEEECCCCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEE
T ss_conf 578733799999999998599475552549987788763899999668-------------3399996589997699997
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 079998999999999999999999754290750697012368
Q 000300 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1705)
Q Consensus 499 RG~s~~~L~evKrvl~dai~vvy~l~lE~sfL~ggGa~~~~~ 540 (1705)
||+++.+|+|+||+++||++++++++.++++|+||||++...
T Consensus 377 rG~te~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~ 418 (548)
T 1q3q_A 377 RGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIEL 418 (548)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEECTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 789767899999999979999999997788056875999999
No 8
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=1.00 E-value=1 Score=376.36 Aligned_cols=257 Identities=23% Similarity=0.338 Sum_probs=241.1
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999863445789872159999999999983012688889975692368079980289978722798499930468899
Q 000300 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 270 l~qLL~~~~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~gd~mDi~~yVKIKkI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
...|++.+.++++||....|.+.|++|+++|+..|.++......+|+ ++|+|+|++||+..||++++|++|+|.+.|+.
T Consensus 148 ~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~ 226 (545)
T 1a6d_A 148 DATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDT-ANIKVDKKNGGSVNDTQFISGIVIDKEKVHSK 226 (545)
T ss_dssp HHHHHHHHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCG-GGEEEEECCCSCSTTCEEESEEEESCCCSCTT
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC-CEEEEEEECCCCCEEEEEEEEEEEECCCCCCC
T ss_conf 99999999998735403454779999999999997233678753434-31799995589720027884079822578899
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC---------CCCHHH-HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 97412597399995305657656---------775777-89999999999977740698099955653099999999849
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1705)
Q Consensus 350 Mp~~i~nPRILLL~~~LEy~r~~---------lsSle~-i~QEkeyL~~lV~rI~~~~pnVVLVeksVs~~Ale~L~~~g 419 (1705)
||++++||||||++++|||++.+ ..+++. +++|++|++.++++|+..|++||+++++|++.|++||.++|
T Consensus 227 m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~ 306 (545)
T 1a6d_A 227 MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEG 306 (545)
T ss_dssp SCSEEEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHT
T ss_pred CCCEECCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 85640588799991677755346784399678999999999999999999999997299899987886689999999879
Q ss_pred CEEECCCCHHHHHHHHHHHCCCEECCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 8475169978999999995994611356-899983113229999931234454479988972599998589996589998
Q 000300 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498 (1705)
Q Consensus 420 Itvv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc~~~~gcTILL 498 (1705)
|++|+++++.+|+|||++|||.++++++ ++...||+|+.|++.+++. ++|+||+||..+..|||+|
T Consensus 307 I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~l 373 (545)
T 1a6d_A 307 IYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGD-------------DRMTFVMGCKNPKAVSILI 373 (545)
T ss_dssp CEEECSCCHHHHHHHHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETT-------------EEEEEEEEESCSSCEEEEE
T ss_pred EEEECCCCHHHHHHHHHHHCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEE
T ss_conf 267524899999999998599254660329987778862899999558-------------3499996688874589997
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 079998999999999999999999754290750697012368
Q 000300 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1705)
Q Consensus 499 RG~s~~~L~evKrvl~dai~vvy~l~lE~sfL~ggGa~~~~~ 540 (1705)
||+++.+|+|+||+++||++++++++.++++|+||||++...
T Consensus 374 rG~te~~l~E~kr~l~DAl~~~r~a~~~g~iVpGGGa~e~~~ 415 (545)
T 1a6d_A 374 RGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAEL 415 (545)
T ss_dssp CCSSSTTHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHH
T ss_conf 689889999999999999999999986898886857999999
No 9
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=1.00 E-value=1 Score=376.28 Aligned_cols=253 Identities=19% Similarity=0.258 Sum_probs=236.2
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCC
Q ss_conf 99998634457898721599999999999830126888899756923680799802899787227984999304688999
Q 000300 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1705)
Q Consensus 271 ~qLL~~~~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~gd~mDi~~yVKIKkI~GGs~~DS~lI~GVV~~Knvahk~M 350 (1705)
..|++.+.+++++|....|.+.|++++++|+..|.+. .+..+|+ ++|+|+|++||+..||++++|++|+|.+.|++|
T Consensus 148 ~~L~~vA~tsl~sKi~~~~~d~la~l~vdaV~~V~~~--~~~~~dl-~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~m 224 (546)
T 3p9d_F 148 EFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDA--QADNLDL-HMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDM 224 (546)
T ss_dssp HHHHHHHHHHTCSTTHHHHCSSHHHHHHHHHHHTHHH--HHTTCCG-GGEEEECCCCSCTTTCCCCSSCEESCCCCSSSS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEECC--CCCCCCC-HHEEEEEECCCCCCCCEEEEEEEEECCCCCCCC
T ss_conf 9999999998178764459999999998862574037--8986662-026999955887121279866998246665567
Q ss_pred CCCCCCCCEEEEEEECCCCCCC---------CCCHHH-HHHHHHHHHHHHHHHHHCC----------CEEEEECCCCCHH
Q ss_conf 7412597399995305657656---------775777-8999999999997774069----------8099955653099
Q 000300 351 PTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCH----------PNVVLVEKTVSRD 410 (1705)
Q Consensus 351 p~~i~nPRILLL~~~LEy~r~~---------lsSle~-i~QEkeyL~~lV~rI~~~~----------pnVVLVeksVs~~ 410 (1705)
|++++||+|||++|+|||++.+ ..+++. +++|++++++.+++|+.++ |+||+++++|++.
T Consensus 225 ~~~~en~kIll~~~~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~ 304 (546)
T 3p9d_F 225 PTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPM 304 (546)
T ss_dssp CSSBCSCCCCEECCCSSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHH
T ss_pred CCEECCCEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf 52630766999627666554556744997689999999999999999999999999998742015886499846767689
Q ss_pred HHHHHHHCCCEEECCCCHHHHHHHHHHHCCCEECCCC-CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 9999998498475169978999999995994611356-899983113229999931234454479988972599998589
Q 000300 411 IQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCP 489 (1705)
Q Consensus 411 Ale~L~~~gItvv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc~ 489 (1705)
|++||.++||++++++++.+|+|||++|||.|+++++ +++..||+|+.|++++++. ++|+||+||+
T Consensus 305 Al~~L~~~gI~~vr~v~~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~i~g~~ 371 (546)
T 3p9d_F 305 SLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGE-------------EKFTYVTENT 371 (546)
T ss_dssp HHHHHTTTTCEEECCCCHHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSS-------------CCCEECSSCS
T ss_pred HHHHHHHCCCEEEECCCHHHHHHHHHHHCCEEECCHHHCCHHHCCCCCEEEEEEECC-------------CEEEEEECCC
T ss_conf 999999889846813798889999998598794562008986788562799998469-------------4699995689
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCC
Q ss_conf 99658999807999899999999999999999975429075069701236
Q 000300 490 TRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1705)
Q Consensus 490 ~~~gcTILLRG~s~~~L~evKrvl~dai~vvy~l~lE~sfL~ggGa~~~~ 539 (1705)
.+.+|||+|||+|+.+|+|+||+++||++++++++.++++++||||++..
T Consensus 372 ~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~ 421 (546)
T 3p9d_F 372 DPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIA 421 (546)
T ss_dssp CCSCEEEECCCSCHHHHHHHHHHHHHHHHHHHHHTTSCCEEETTTHHHHH
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHH
T ss_conf 97558999779877899999999999999999983399599588799999
No 10
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=375.49 Aligned_cols=253 Identities=19% Similarity=0.265 Sum_probs=236.2
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999863445789872159999999999983012688889975692368079980289978722798499930468899
Q 000300 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1705)
Q Consensus 270 l~qLL~~~~isl~sK~~~~w~d~ls~L~veAv~~V~pd~~~gd~mDi~~yVKIKkI~GGs~~DS~lI~GVV~~Knvahk~ 349 (1705)
...|++.+.+++++|....|.++|++++++|+..|.+. +..+|+ ++|+|+|++||+..||++++|++|+|...|+.
T Consensus 137 ~~~L~~va~tsl~sKi~~~~~d~la~l~vdaV~~V~~~---~~~~dl-~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~ 212 (517)
T 3iyg_Z 137 RETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQ---DEPIDL-FMVEIMEMKHKSETDTSLIRGLVLDHGARHPD 212 (517)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC---CCCCCH-HHHEEEEECCCCCCCCCEEEEEEEECCCCCCC
T ss_conf 89999999987045542047889999999886033147---876773-57136651488732000575479832577877
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC------CC---CHHH-HHHHHHHHHHHHHHHHHCCCE---------EEEECCCCCHH
Q ss_conf 97412597399995305657656------77---5777-899999999999777406980---------99955653099
Q 000300 350 MPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPN---------VVLVEKTVSRD 410 (1705)
Q Consensus 350 Mp~~i~nPRILLL~~~LEy~r~~------ls---Sle~-i~QEkeyL~~lV~rI~~~~pn---------VVLVeksVs~~ 410 (1705)
||++++||+||+++++|||++.+ +. +++. +++|++|++..|++|+.++++ ||+++++|++.
T Consensus 213 m~~~ien~kIll~~~~le~~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~ 292 (517)
T 3iyg_Z 213 MKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPF 292 (517)
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf 64322387499953665555444541699689999999999999999999999998505554125786389735667879
Q ss_pred HHHHHHHCCCEEECCCCHHHHHHHHHHHCCCEECCCC-CCCCC-CCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 9999998498475169978999999995994611356-89998-311322999993123445447998897259999858
Q 000300 411 IQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQK-LKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGC 488 (1705)
Q Consensus 411 Ale~L~~~gItvv~nVK~~~LeRIAR~TGA~IisSid-L~~~~-LG~C~~f~v~~f~~~~~~~~~~~k~~~Ktliffegc 488 (1705)
|++||.++||++++++++.+|+|||++|||.|+++++ +++.. ||+|+ |++++++. ++++||+||
T Consensus 293 al~~L~~~gI~~v~~v~~~~leria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~-------------~~~~~~~g~ 358 (517)
T 3iyg_Z 293 SLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGE-------------EKFTFIEKC 358 (517)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHCCEEECCHHHCCCCCCCCCCE-EEEEEECC-------------CEEEEEECC
T ss_conf 9999998798799825799999999986997854534275000477514-99999768-------------258999478
Q ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 9996589998079998999999999999999999754290750697012368
Q 000300 489 PTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1705)
Q Consensus 489 ~~~~gcTILLRG~s~~~L~evKrvl~dai~vvy~l~lE~sfL~ggGa~~~~~ 540 (1705)
+.+.+|||+|||+|+.+|+|+||+++||++++++++.++++++||||++...
T Consensus 359 ~~~~~~TI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~ 410 (517)
T 3iyg_Z 359 NNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAM 410 (517)
T ss_pred CCCHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHH
T ss_conf 9833443431488678999999999988999999973661854862899999
Done!