BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000301
(1701 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 428 FTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSV-FLEV 486
F + +E F+RL + + ++ C + N +++V PR P SV F
Sbjct: 33 FQFTVERFSRLSESV----LSPPCF------VRNLPWKIMVMPRFYPDRPHQKSVGFFLQ 82
Query: 487 MDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQD 546
++ + S+ WSC L ++N + +EKS ++ + + DWG+ F+ + + D +
Sbjct: 83 CNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPE 142
Query: 547 SGFLVQDTVVFSAEV 561
GF+ D V F V
Sbjct: 143 KGFIDDDKVTFEVFV 157
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 69 SLGTRDGSGGAQESVAVDRRGEHSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLV-- 126
++ DG A+E + D A ++TV F R+ L F V +++V
Sbjct: 7 NVALSDGHNTAEEDMEDDTSWRSEATFQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMP 65
Query: 127 --YPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESKTIHRDSWHRF 184
YP Q G+ +LQ + S+ W C A L I+N D+ K+ R H F
Sbjct: 66 RFYPDRPHQKSVGF---FLQC--NAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLF 120
Query: 185 SSKKKSHGWCDFTPSSTVFDSKLGYLFNNDA---VLITAD 221
K+ G+ +F S V D + G++ ++ V + AD
Sbjct: 121 FHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQAD 160
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 428 FTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSV-FLEV 486
F + +E F+RL + + ++ C + N +++V PR P SV F
Sbjct: 23 FQFTVERFSRLSESV----LSPPCF------VRNLPWKIMVMPRFYPDRPHQKSVGFFLQ 72
Query: 487 MDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQD 546
++ + S+ WSC L ++N + +EKS ++ + + DWG+ F+ + + D +
Sbjct: 73 CNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPE 132
Query: 547 SGFLVQDTVVFSAEVLI 563
GF+ D V F EV +
Sbjct: 133 KGFIDDDKVTF--EVFV 147
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 13/150 (8%)
Query: 79 AQESVAVDRRGEHSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLV----YPKGDSQA 134
A+E + D A ++TV F R+ L F V +++V YP Q
Sbjct: 7 AEEDMEDDTSWRSEATFQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYPDRPHQK 65
Query: 135 LPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESKTIHRDSWHRFSSKKKSHGWC 194
G+ +LQ + S+ W C A L I+N D+ K+ R H F K+ G+
Sbjct: 66 SVGF---FLQCN--AESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFS 120
Query: 195 DFTPSSTVFDSKLGYLFNNDA---VLITAD 221
+F S V D + G++ ++ V + AD
Sbjct: 121 NFMAWSEVTDPEKGFIDDDKVTFEVFVQAD 150
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 426 GKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSV-FL 484
F + +E F+RL + + ++ C + N +++V PR P SV F
Sbjct: 21 ATFQFTVERFSRLSESV----LSPPCF------VRNLPWKIMVMPRFYPDRPHQKSVGFF 70
Query: 485 EVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFD 544
++ + S+ WSC L ++N + +EKS ++ + + DWG+ F+ + + D
Sbjct: 71 LQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTD 130
Query: 545 QDSGFLVQDTVVFSAEVLI 563
+ GF+ D V F EV +
Sbjct: 131 PEKGFIDDDKVTF--EVFV 147
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 13/151 (8%)
Query: 79 AQESVAVDRRGEHSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLV----YPKGDSQA 134
A+E + D A ++TV F R+ L F V +++V YP Q
Sbjct: 7 AEEDMEDDTSWRSEATFQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYPDRPHQK 65
Query: 135 LPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESKTIHRDSWHRFSSKKKSHGWC 194
G+ +LQ + S+ W C A L I+N D+ K+ R H F K+ G+
Sbjct: 66 SVGF---FLQCN--AESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFS 120
Query: 195 DFTPSSTVFDSKLGYLFNNDA---VLITADI 222
+F S V D + G++ ++ V + AD+
Sbjct: 121 NFMAWSEVTDPEKGFIDDDKVTFEVFVQADL 151
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 426 GKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSV-FL 484
F + +E F+RL + + ++ C + N +++V PR P SV F
Sbjct: 21 ATFQFTVERFSRLSESV----LSPPCF------VRNLPWKIMVMPRFYPDRPHQKSVGFF 70
Query: 485 EVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFD 544
++ + S+ WSC L ++N + +EKS ++ + + DWG+ F+ + + D
Sbjct: 71 LQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTD 130
Query: 545 QDSGFLVQDTVVFSAEVLI 563
+ GF+ D V F EV +
Sbjct: 131 PEKGFIDDDKVTF--EVFV 147
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 13/150 (8%)
Query: 79 AQESVAVDRRGEHSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLV----YPKGDSQA 134
A+E + D A ++TV F R+ L F V +++V YP Q
Sbjct: 7 AEEDMEDDTSWRSEATFQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYPDRPHQK 65
Query: 135 LPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESKTIHRDSWHRFSSKKKSHGWC 194
G+ +LQ + S+ W C A L I+N D+ K+ R H F K+ G+
Sbjct: 66 SVGF---FLQCN--AESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFS 120
Query: 195 DFTPSSTVFDSKLGYLFNNDA---VLITAD 221
+F S V D + G++ ++ V + AD
Sbjct: 121 NFMAWSEVTDPEKGFIDDDKVTFEVFVQAD 150
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 426 GKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSV-FL 484
F + +E F+RL + + ++ C + N +++V PR P SV F
Sbjct: 19 ATFQFTVERFSRLSESV----LSPPCF------VRNLPWKIMVMPRFYPDRPHQKSVGFF 68
Query: 485 EVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFD 544
++ + S+ WSC L ++N + +EKS ++ + + DWG+ F+ + + D
Sbjct: 69 LQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTD 128
Query: 545 QDSGFLVQDTVVFSAEVLI 563
+ GF+ D V F EV +
Sbjct: 129 PEKGFIDDDKVTF--EVFV 145
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 75 GSGGAQESVAVDRRGEHSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLV----YPKG 130
GS A+E + D A ++TV F R+ L F V +++V YP
Sbjct: 1 GSHTAEEDMEDDTSWRSEATFQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYPDR 59
Query: 131 DSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESKTIHRDSWHRFSSKKKS 190
Q G+ +LQ + S+ W C A L I+N D+ K+ R H F K+
Sbjct: 60 PHQKSVGF---FLQCN--AESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKEND 114
Query: 191 HGWCDFTPSSTVFDSKLGYLFNNDA---VLITAD 221
G+ +F S V D + G++ ++ V + AD
Sbjct: 115 WGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQAD 148
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 426 GKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSV-FL 484
F + +E F+RL + + ++ C + N +++V PR P SV F
Sbjct: 7 ATFQFTVERFSRLSESV----LSPPCF------VRNLPWKIMVMPRFYPDRPHQKSVGFF 56
Query: 485 EVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFD 544
++ + S+ WSC L ++N + +EKS ++ + + DWG+ F+ + + D
Sbjct: 57 LQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTD 116
Query: 545 QDSGFLVQDTVVFSAEVLI 563
+ GF+ D V F EV +
Sbjct: 117 PEKGFIDDDKVTF--EVFV 133
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Query: 93 AVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLV----YPKGDSQALPGYISIYLQIMDP 148
A ++TV F R+ L F V +++V YP Q G+ +LQ
Sbjct: 7 ATFQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYPDRPHQKSVGF---FLQCN-- 60
Query: 149 RGTSSSKWDCFASYRLAIVNLSDESKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLG 208
+ S+ W C A L I+N D+ K+ R H F K+ G+ +F S V D + G
Sbjct: 61 AESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKG 120
Query: 209 YLFNNDA---VLITAD 221
++ ++ V + AD
Sbjct: 121 FIDDDKVTFEVFVQAD 136
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 18/158 (11%)
Query: 417 GARKSDGHMGKFT--WRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRD----CRLIVYP 470
G+ S G + KF+ W I NF+ ++ + G IKS F G D C L V P
Sbjct: 1 GSSGSSGKVVKFSYMWTINNFSFCREEM------GEVIKSSTFSSGANDKLKWC-LRVNP 53
Query: 471 RGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKA-AK 529
+G + ++ S S + F + S++N K EE ESQ Y K
Sbjct: 54 KGLDEESKDYLSLYLLLVSCPKSEVRAKF---KFSILNAKGEETKAM-ESQRAYRFVQGK 109
Query: 530 DWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKET 567
DWG+++F+ L D+ +G L D + EV +++++
Sbjct: 110 DWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS 147
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 428 FTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRD----CRLIVYPRGQSQPPCHLSVF 483
+ W I NF+ R+ G IKS F G D C L V P+G +
Sbjct: 9 YMWTINNFSFC------REEMGEVIKSSTFSSGANDKLKWC-LRVNPKGLDEESKDYLSL 61
Query: 484 LEVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKA-AKDWGWREFVTLTSL 542
++ S S + F + S++N K EE ESQ Y KDWG+++F+ L
Sbjct: 62 YLLLVSCPKSEVRAKF---KFSILNAKGEETKAM-ESQRAYRFVQGKDWGFKKFIRRGFL 117
Query: 543 FDQDSGFLVQDTVVFSAEVLILKET 567
D+ +G L D + EV +++++
Sbjct: 118 LDEANGLLPDDKLTLFCEVSVVQDS 142
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 1464 DDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAE---RLKSAEAAR 1520
+D+ KLT E+K+L++R+ D T L++ + + ++ K K ++ ++E RLK E +R
Sbjct: 996 EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055
Query: 1521 KRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGME 1580
+ E++KR E L +++ L + + + + +KEE++ A ++
Sbjct: 1056 QEL-EKIKRKL------EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108
Query: 1581 SKLQACQQYIHTLEAQ---LQEEM-SRHAPLYGAGLEALSM-KELETLARIHEEGLRQIH 1635
S+ + I LE+ LQE++ S A A + + +ELE L E+ L
Sbjct: 1109 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTA 1168
Query: 1636 TLQQCKGS 1643
T Q+ +GS
Sbjct: 1169 TQQELRGS 1176
>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex
pdb|4A55|B Chain B, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 279
Score = 37.7 bits (86), Expect = 0.055, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
Query: 1421 EAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRS--ERDDEIAKLTTEKKVLQ 1478
EA G +L E + +RE L E+ +++ R+ E +E K+ E+ Q
Sbjct: 122 EAVGKKLH-EYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQ 180
Query: 1479 DRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTRE 1538
+R + + + ++ E++R++ + L R+ +R+R +E+LK+ A E +
Sbjct: 181 ERYSKEYIEKFKREGNEK-EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREID 239
Query: 1539 EICQSLQDEVRRLTQTVGQ 1557
+ S++ ++ +L +T Q
Sbjct: 240 KRMNSIKPDLIQLRKTRDQ 258
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 37.7 bits (86), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 423 GHMGKFT--WRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRD----CRLIVYPRGQSQP 476
G + KF+ W I NF+ ++ + G IKS F G D C L V P+G +
Sbjct: 6 GKVVKFSYMWTINNFSFCREEM------GEVIKSSTFSSGANDKLKWC-LRVNPKGLDEE 58
Query: 477 PCHLSVFLEVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKA-AKDWGWRE 535
++ S S + F + S++N K EE ESQ Y KDWG+++
Sbjct: 59 SKDYLSLYLLLVSCPKSEVRAKF---KFSILNAKGEETKAM-ESQRAYRFVQGKDWGFKK 114
Query: 536 FVTLTSLFDQDSGFLVQDTVVFSAEVLILKE 566
F+ L D+ +G L D + EV ++++
Sbjct: 115 FIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 37.4 bits (85), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 428 FTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRD----CRLIVYPRGQSQPPCHLSVF 483
+ W I NF+ ++ + G IKS F G D C L V P+G +
Sbjct: 13 YMWTINNFSFCREEM------GEVIKSSTFSSGANDKLKWC-LRVNPKGLDEESKDYLSL 65
Query: 484 LEVMDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKA-AKDWGWREFVTLTSL 542
++ S S + F + S++N K EE ESQ Y KDWG+++F+ L
Sbjct: 66 YLLLVSCPKSEVRAKF---KFSILNAKGEETKAM-ESQRAYRFVQGKDWGFKKFIRRGFL 121
Query: 543 FDQDSGFLVQDTVVFSAEVLILKE 566
D+ +G L D + EV ++++
Sbjct: 122 LDEANGLLPDDKLTLFCEVSVVQD 145
>pdb|4F61|I Chain I, Tubulin:stathmin-Like Domain Complex
Length = 240
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 14/175 (8%)
Query: 1421 EAAGNRLKSEMRAEMDRFAREKKELSEQM--REVESQLEWLRSERDDEIAKLTTEKK--- 1475
EAA R K + AE+ + EK+E ++ R +E W++ ++ K+ + K+
Sbjct: 52 EAAEERRKYQ-EAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENRE 110
Query: 1476 ----VLQDRLHDAETQLSQLKSRKRDELKRVVK-EKNALAERLKSAEAARKRFDEELKRY 1530
+ +RL + + +++ R +E +K K LA++++S + RK + EL ++
Sbjct: 111 AHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKH 170
Query: 1531 ATENVTRE-EICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQ 1584
E E E+ Q +E + + +K E ++ EA+ M +LQ
Sbjct: 171 LAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKE--NREAHFAAMLERLQ 223
>pdb|2V0O|A Chain A, Fcho2 F-Bar Domain
pdb|2V0O|B Chain B, Fcho2 F-Bar Domain
pdb|2V0O|C Chain C, Fcho2 F-Bar Domain
Length = 276
Score = 34.7 bits (78), Expect = 0.43, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 77/162 (47%), Gaps = 18/162 (11%)
Query: 1414 SQKLAESEAAGNRLKSEMRAEMDRFARE--------KKELS---EQMREVESQLEWLRSE 1462
++KLA R E+ E+ ++ E K+E++ E ++ ++S + L+
Sbjct: 82 TEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKS 141
Query: 1463 RDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAE---RLKSAEAA 1519
+++ AK ++++ ++ E + + +KS+K + ++ EK ALA+ K E A
Sbjct: 142 KENYNAKCVEQERLKKEGATQREIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETA 201
Query: 1520 RKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGE 1561
+K D E T + +EI SL + ++ + +GQ E
Sbjct: 202 QKFQDIE----ETHLIHIKEIIGSLSNAIKEIHLQIGQVHEE 239
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 1416 KLAESEA--AGNRLKS------EMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEI 1467
+++E EA A NR+ S ++R E+ + EKK + E + + + E L SE ++
Sbjct: 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032
Query: 1468 AKLTTEKKVLQDRLHDAETQLSQLKSRK 1495
L TEK+ L R+HD ++++ +K
Sbjct: 1033 TLLKTEKEELNRRIHDQAKEITETMEKK 1060
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 20/171 (11%)
Query: 1466 EIAKLTTEKKVLQ--DRLHDA-ETQLSQLKSR---KRDELKRVVKEKNAL-------AER 1512
E+ KL E + ++ +LH E ++ QL+ + + E K ++++ N L E+
Sbjct: 905 ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964
Query: 1513 LKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARC 1572
L+S + R R EE + AT V SLQ+E+ +L + + QT+ EK+ EE +
Sbjct: 965 LRS-DVERLRMSEEEAKNATNRVL------SLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017
Query: 1573 EAYIDGMESKLQACQQYIHTLEAQLQEEMSRHAPLYGAGLEALSMKELETL 1623
+ + + S+L+ + T + +L + A +E ++E + L
Sbjct: 1018 KHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068
>pdb|2V1Y|B Chain B, Structure Of A Phosphoinositide 3-Kinase Alpha Adaptor-
Binding Domain (Abd) In A Complex With The Ish2 Domain
From P85 Alpha
Length = 170
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 1421 EAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRS--ERDDEIAKLTTEKKVLQ 1478
EA G +L + + +RE L E+ +++ R+ E +E K+ E+ Q
Sbjct: 13 EAVGKKLH-KYNTQFQEKSREYDRLYEEYTRTSQEIQXKRTAIEAFNETIKIFEEQCQTQ 71
Query: 1479 DRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTRE 1538
+R + + + ++ E++R+ + L R+ +R+R +E+LK+ A E +
Sbjct: 72 ERYSKEYIEKFKREGNEK-EIQRIXHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREID 130
Query: 1539 EICQSLQDEVRRLTQTVGQ 1557
+ S++ ++ +L +T Q
Sbjct: 131 KRXNSIKPDLIQLRKTRDQ 149
>pdb|3UWK|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase: From
Hit To Lead Generation
pdb|3UWK|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase: From
Hit To Lead Generation
Length = 232
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 1046 DALIERLQKSDAEPALRMPVFVALSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFI 1105
D L ERL++ E V L++ G+ + ERI ELL +DEP+A + +
Sbjct: 41 DYLAERLRERGIE--------VQLTREPGGTPLAERIR----ELLLAPSDEPMAADTELL 88
Query: 1106 FKAASQCQHLPEAVRSVRVR 1125
A++ QHL +R R
Sbjct: 89 LMFAARAQHLAGVIRPALAR 108
>pdb|3UWO|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase: From
Hit To Lead Generation
pdb|3UWO|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase: From
Hit To Lead Generation
Length = 220
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 1046 DALIERLQKSDAEPALRMPVFVALSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFI 1105
D L ERL++ E V L++ G+ + ERI ELL +DEP+A + +
Sbjct: 29 DYLAERLRERGIE--------VQLTREPGGTPLAERIR----ELLLAPSDEPMAADTELL 76
Query: 1106 FKAASQCQHLPEAVRSVRVR 1125
A++ QHL +R R
Sbjct: 77 LMFAARAQHLAGVIRPALAR 96
>pdb|3UXM|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase: From
Hit To Lead Generation
pdb|3UXM|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase: From
Hit To Lead Generation
pdb|3UXM|C Chain C, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase: From
Hit To Lead Generation
pdb|3UXM|D Chain D, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase: From
Hit To Lead Generation
Length = 211
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 1046 DALIERLQKSDAEPALRMPVFVALSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFI 1105
D L ERL++ E V L++ G+ + ERI ELL +DEP+A + +
Sbjct: 20 DYLAERLRERGIE--------VQLTREPGGTPLAERIR----ELLLAPSDEPMAADTELL 67
Query: 1106 FKAASQCQHLPEAVRSVRVR 1125
A++ QHL +R R
Sbjct: 68 LMFAARAQHLAGVIRPALAR 87
>pdb|4EDH|A Chain A, The Crystal Structure Of Thymidylate Kinase From Pseudomonas
Aeruginosa Pao1 In Complex With Adp,Tmp And Mg.
pdb|4EDH|B Chain B, The Crystal Structure Of Thymidylate Kinase From Pseudomonas
Aeruginosa Pao1 In Complex With Adp,Tmp And Mg.
pdb|4ESH|A Chain A, The Crystal Structure Of Thymidylate Kinase From Pseudomonas
Aeruginosa Pao1 In Complex With Deoxythymidine.
pdb|4GMD|A Chain A, The Crystal Structure Of Thymidylate Kinase From Pseudomonas
Aeruginosa Pao1 In Complex With Azt Monophosphate
pdb|4GMD|B Chain B, The Crystal Structure Of Thymidylate Kinase From Pseudomonas
Aeruginosa Pao1 In Complex With Azt Monophosphate
pdb|4GMD|C Chain C, The Crystal Structure Of Thymidylate Kinase From Pseudomonas
Aeruginosa Pao1 In Complex With Azt Monophosphate
pdb|4GMD|D Chain D, The Crystal Structure Of Thymidylate Kinase From Pseudomonas
Aeruginosa Pao1 In Complex With Azt Monophosphate
Length = 213
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 1046 DALIERLQKSDAEPALRMPVFVALSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFI 1105
D L ERL++ E V L++ G+ + ERI ELL +DEP+A + +
Sbjct: 24 DYLAERLRERGIE--------VQLTREPGGTPLAERIR----ELLLAPSDEPMAADTELL 71
Query: 1106 FKAASQCQHLPEAVRSVRVR 1125
A++ QHL +R R
Sbjct: 72 LMFAARAQHLAGVIRPALAR 91
>pdb|3FPP|A Chain A, Crystal Structure Of E.Coli Maca
pdb|3FPP|B Chain B, Crystal Structure Of E.Coli Maca
Length = 341
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 1441 EKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELK 1500
+ ++ Q++EVE+ L LR++R A+L L + + +L+Q ++ + +L
Sbjct: 63 DPEQAENQIKEVEATLMELRAQRQQAEAELK-----LARVTYSRQQRLAQTQAVSQQDLD 117
Query: 1501 RVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQT 1558
E ++ + +A KR L A N+ I + EV ++T GQT
Sbjct: 118 NAATEMAVKQAQIGTIDAQIKRNQASLDT-AKTNLDYTRIVAPMAGEVTQITTLQGQT 174
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 602 NFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDLDKNFWVRYR 661
+FL+ E M +I +K F+ G +IGV ++ Y+ + LDK+ +++
Sbjct: 651 SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVE 710
Query: 662 MAVVN 666
+A V+
Sbjct: 711 VASVD 715
>pdb|4E5U|A Chain A, The Crystal Structure Of Thymidylate Kinase From Pseudomonas
Aeruginosa Pao1 In Complex With Thymidine Monophosphate.
pdb|4E5U|B Chain B, The Crystal Structure Of Thymidylate Kinase From Pseudomonas
Aeruginosa Pao1 In Complex With Thymidine Monophosphate
Length = 213
Score = 32.3 bits (72), Expect = 2.3, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 1046 DALIERLQKSDAEPALRMPVFVALSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFI 1105
D L ERL++ E V L++ G+ + ERI ELL +DEP A + +
Sbjct: 24 DYLAERLRERGIE--------VQLTREPGGTPLAERIR----ELLLAPSDEPXAADTELL 71
Query: 1106 FKAASQCQHLPEAVRSVRVR 1125
A++ QHL +R R
Sbjct: 72 LXFAARAQHLAGVIRPALAR 91
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 1477 LQDRLHDAETQLSQLKSRKRD---ELKRVVKEKNALA-ERLKSAEAARKRFDEELKRYAT 1532
L+ L A ++ L+ +K E + + KEK+ + ERLK+ EA + EE+ +
Sbjct: 255 LRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRA 314
Query: 1533 ENVTREEICQSLQDEVRRLTQTVGQTEGEKRE---------KEEQVARCEAYIDGMESKL 1583
E EI + L++ RL + + E +R+ + ++ + EA ++ + KL
Sbjct: 315 EWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKL 374
Query: 1584 QACQ-QYIHTLEAQLQEEMSR 1603
+ + + E + E +SR
Sbjct: 375 RGARFVRLEVTEEDIAEIVSR 395
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 96/189 (50%), Gaps = 33/189 (17%)
Query: 1385 LCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKE 1444
LC E+ R RK + ++ + KA ++ +A +L+ E+ A +R ++++E
Sbjct: 283 LCMGNHELYMRR--RKPDTIDVQQMKAQAREEKLAKQAQREKLQLEI-AARERAEKKQQE 339
Query: 1445 LSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVK 1504
+++R+++ ++E RS+ A L QD + E QL QL++ K +EL++
Sbjct: 340 YQDRLRQMQEEME--RSQ-----ANLLE----AQDMILRLEEQLRQLQAAK-EELEQRQN 387
Query: 1505 EKNALAERL---KSAEAA-RKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEG 1560
E A+ +RL K+ EAA R++ ++E++ + Q+EV R+ Q V +
Sbjct: 388 ELQAMMQRLEETKNMEAAERQKLEDEIR--------------AKQEEVSRIQQEVELKDS 433
Query: 1561 EKREKEEQV 1569
E R +E+V
Sbjct: 434 ETRRLQEEV 442
>pdb|2XV9|A Chain A, The Solution Structure Of Aba-1a Saturated With Oleic Acid
Length = 134
Score = 30.8 bits (68), Expect = 7.7, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 1452 VESQLEWLRSERDDEI--------AKLTTEKKVLQ--DRLH-DAETQLSQ-LKSRKRDEL 1499
+++ L+WL E+ DE+ AK E K+L D L DA+ + ++ LK R+ L
Sbjct: 14 LDTHLKWLSQEQKDELLKMKKDGKAKKELEAKILHYYDELEGDAKKEATEHLKGGCREIL 73
Query: 1500 KRVV-KEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQD 1546
K VV +EK A + LK + A+++ +++ A VT EE Q + D
Sbjct: 74 KHVVGEEKAAELKNLKDSGASKEELKAKVEE-ALHAVTDEEKKQYIAD 120
>pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298
pdb|2DQ3|B Chain B, Crystal Structure Of Aq_298
Length = 425
Score = 30.4 bits (67), Expect = 8.7, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 18/93 (19%)
Query: 1405 NMVREKAVF-SQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRSER 1463
N++REK + ++LA + E+ + +D+ EL ++ RE+ +LE LRSER
Sbjct: 5 NLIREKPDYVKERLATRD-------KELVSLVDKVL----ELDKRRREIIKRLEALRSER 53
Query: 1464 D---DEIAKLTTEKK---VLQDRLHDAETQLSQ 1490
+ EI KL E K +Q+R+ + + ++ +
Sbjct: 54 NKLSKEIGKLKREGKDTTEIQNRVKELKEEIDR 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,718,857
Number of Sequences: 62578
Number of extensions: 1761944
Number of successful extensions: 4535
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 4399
Number of HSP's gapped (non-prelim): 175
length of query: 1701
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1589
effective length of database: 7,964,601
effective search space: 12655750989
effective search space used: 12655750989
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)