Query 000301
Match_columns 1701
No_of_seqs 685 out of 2854
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14631 FancD2: Fanconi anaem 100.0 4.6E-73 1E-77 758.5 26.9 437 761-1373 44-528 (1426)
2 KOG4712 Uncharacterized conser 100.0 1.2E-51 2.7E-56 498.3 23.9 429 761-1369 40-507 (1335)
3 cd03772 MATH_HAUSP Herpesvirus 99.9 4.5E-22 9.8E-27 209.0 15.6 131 92-226 2-134 (137)
4 cd03772 MATH_HAUSP Herpesvirus 99.9 4.4E-22 9.6E-27 209.0 15.1 130 425-565 2-134 (137)
5 cd03775 MATH_Ubp21p Ubiquitin- 99.9 9.5E-22 2E-26 205.9 13.8 124 427-561 2-133 (134)
6 cd03775 MATH_Ubp21p Ubiquitin- 99.9 2.2E-21 4.7E-26 203.2 14.3 126 94-223 2-134 (134)
7 cd03780 MATH_TRAF5 Tumor Necro 99.9 2.2E-21 4.7E-26 206.0 12.8 135 259-394 1-147 (148)
8 cd03777 MATH_TRAF3 Tumor Necro 99.9 2.6E-21 5.6E-26 212.3 12.9 135 258-395 38-184 (186)
9 cd03778 MATH_TRAF2 Tumor Necro 99.8 5.1E-21 1.1E-25 204.6 12.5 135 257-394 17-163 (164)
10 cd03779 MATH_TRAF1 Tumor Necro 99.8 5.6E-21 1.2E-25 202.1 12.1 134 259-394 1-146 (147)
11 cd03776 MATH_TRAF6 Tumor Necro 99.8 5.6E-21 1.2E-25 203.2 11.0 135 259-395 1-147 (147)
12 cd03774 MATH_SPOP Speckle-type 99.8 1.7E-20 3.7E-25 197.5 14.3 130 425-565 4-138 (139)
13 cd00270 MATH_TRAF_C Tumor Necr 99.8 8.8E-21 1.9E-25 201.7 12.0 134 259-394 1-148 (149)
14 cd03771 MATH_Meprin Meprin fam 99.8 2.4E-20 5.1E-25 200.9 13.2 135 258-394 1-166 (167)
15 cd03781 MATH_TRAF4 Tumor Necro 99.8 2.5E-20 5.5E-25 199.7 11.2 134 259-394 1-153 (154)
16 cd03773 MATH_TRIM37 Tripartite 99.8 1.2E-19 2.6E-24 189.1 13.1 125 424-562 3-130 (132)
17 cd00270 MATH_TRAF_C Tumor Necr 99.8 1.2E-19 2.5E-24 193.1 12.4 132 426-561 1-148 (149)
18 cd03774 MATH_SPOP Speckle-type 99.8 3.2E-19 6.9E-24 187.8 13.6 129 92-227 4-139 (139)
19 cd03776 MATH_TRAF6 Tumor Necro 99.8 1.5E-19 3.2E-24 192.3 11.1 131 426-562 1-147 (147)
20 KOG0161 Myosin class II heavy 99.8 9.5E-17 2.1E-21 218.0 38.6 259 1358-1642 825-1107(1930)
21 cd03781 MATH_TRAF4 Tumor Necro 99.8 6.5E-19 1.4E-23 188.9 12.8 132 426-561 1-153 (154)
22 cd03780 MATH_TRAF5 Tumor Necro 99.8 7.3E-19 1.6E-23 186.8 12.9 132 426-561 1-147 (148)
23 cd03773 MATH_TRIM37 Tripartite 99.8 6.1E-19 1.3E-23 183.7 12.0 123 258-395 4-130 (132)
24 cd03777 MATH_TRAF3 Tumor Necro 99.8 2E-18 4.3E-23 189.7 13.9 134 423-562 36-184 (186)
25 cd03783 MATH_Meprin_Alpha Mepr 99.8 2.1E-18 4.6E-23 183.8 10.6 135 258-394 1-166 (167)
26 cd03779 MATH_TRAF1 Tumor Necro 99.8 5.8E-18 1.3E-22 179.4 13.4 134 426-561 1-146 (147)
27 cd03782 MATH_Meprin_Beta Mepri 99.7 5.1E-18 1.1E-22 179.9 11.0 135 258-394 1-166 (167)
28 cd03771 MATH_Meprin Meprin fam 99.7 3.6E-17 7.8E-22 176.4 13.5 131 425-561 1-166 (167)
29 cd00121 MATH MATH (meprin and 99.7 7.1E-17 1.5E-21 163.8 14.4 125 426-562 1-126 (126)
30 cd00121 MATH MATH (meprin and 99.7 9.7E-17 2.1E-21 162.7 14.3 124 94-223 2-126 (126)
31 cd03778 MATH_TRAF2 Tumor Necro 99.7 1.3E-16 2.8E-21 171.0 13.8 135 423-561 16-163 (164)
32 PF00917 MATH: MATH domain; I 99.6 2.8E-16 6E-21 159.3 9.0 118 432-563 1-119 (119)
33 PF00917 MATH: MATH domain; I 99.6 1.6E-16 3.4E-21 161.1 6.0 117 99-224 1-119 (119)
34 smart00061 MATH meprin and TRA 99.5 1.6E-13 3.4E-18 133.4 10.7 93 95-197 2-95 (95)
35 smart00061 MATH meprin and TRA 99.5 1.4E-13 3.1E-18 133.7 10.4 94 428-537 2-95 (95)
36 COG5077 Ubiquitin carboxyl-ter 99.4 9E-14 1.9E-18 169.7 6.8 135 91-230 37-176 (1089)
37 cd03782 MATH_Meprin_Beta Mepri 99.4 1E-12 2.2E-17 140.0 11.0 131 425-561 1-166 (167)
38 cd03783 MATH_Meprin_Alpha Mepr 99.4 2.4E-12 5.2E-17 137.9 10.8 131 425-561 1-166 (167)
39 COG5077 Ubiquitin carboxyl-ter 99.3 5.2E-12 1.1E-16 154.7 7.8 144 424-579 37-188 (1089)
40 KOG0161 Myosin class II heavy 99.2 5.8E-08 1.3E-12 134.2 39.0 151 1434-1599 951-1101(1930)
41 KOG0971 Microtubule-associated 99.1 4.4E-07 9.4E-12 114.0 37.7 33 1464-1496 324-356 (1243)
42 KOG1029 Endocytic adaptor prot 99.1 4.6E-07 9.9E-12 112.2 36.9 168 1432-1599 392-574 (1118)
43 PF07888 CALCOCO1: Calcium bin 99.0 4.9E-06 1.1E-10 103.6 45.3 40 1359-1398 133-172 (546)
44 TIGR02168 SMC_prok_B chromosom 99.0 5.4E-07 1.2E-11 125.1 40.9 24 1547-1570 874-897 (1179)
45 KOG1987 Speckle-type POZ prote 99.0 1.6E-11 3.5E-16 145.2 -4.0 268 428-718 6-292 (297)
46 TIGR02168 SMC_prok_B chromosom 99.0 6.9E-07 1.5E-11 124.0 40.8 63 1536-1598 877-939 (1179)
47 TIGR02169 SMC_prok_A chromosom 99.0 9.8E-07 2.1E-11 122.7 41.5 9 1201-1209 37-45 (1164)
48 PRK02224 chromosome segregatio 98.9 2.2E-06 4.8E-11 116.2 40.3 7 977-983 117-123 (880)
49 PF07888 CALCOCO1: Calcium bin 98.9 6.9E-06 1.5E-10 102.4 37.8 28 1618-1645 431-458 (546)
50 COG1196 Smc Chromosome segrega 98.9 6.3E-06 1.4E-10 114.5 41.8 85 1509-1593 826-910 (1163)
51 PRK02224 chromosome segregatio 98.9 9.3E-06 2E-10 110.2 42.1 21 1620-1640 648-668 (880)
52 KOG0971 Microtubule-associated 98.8 1.3E-05 2.9E-10 101.2 37.0 41 1425-1465 316-357 (1243)
53 PF00261 Tropomyosin: Tropomyo 98.8 4.8E-06 1E-10 96.1 31.2 90 1508-1597 138-227 (237)
54 KOG1987 Speckle-type POZ prote 98.8 3.6E-09 7.7E-14 125.4 5.6 273 95-394 6-291 (297)
55 KOG0996 Structural maintenance 98.8 2.1E-05 4.4E-10 102.7 38.8 159 1437-1595 402-563 (1293)
56 PF09726 Macoilin: Transmembra 98.8 3.8E-06 8.2E-11 109.3 32.6 193 1428-1642 455-653 (697)
57 COG1196 Smc Chromosome segrega 98.8 1.6E-05 3.4E-10 110.6 40.4 93 1501-1593 825-917 (1163)
58 PRK11637 AmiB activator; Provi 98.8 2E-05 4.3E-10 98.6 36.9 56 1538-1593 183-238 (428)
59 PF00261 Tropomyosin: Tropomyo 98.8 7.7E-06 1.7E-10 94.4 30.6 91 1509-1599 118-208 (237)
60 KOG0250 DNA repair protein RAD 98.7 2.9E-05 6.4E-10 101.6 38.4 94 1502-1595 349-443 (1074)
61 KOG0977 Nuclear envelope prote 98.7 6.5E-06 1.4E-10 102.6 29.8 63 1338-1400 64-130 (546)
62 TIGR00606 rad50 rad50. This fa 98.7 6.2E-05 1.3E-09 106.0 42.3 14 1280-1293 635-648 (1311)
63 PRK03918 chromosome segregatio 98.7 3.2E-05 7E-10 105.0 38.3 47 1346-1392 428-475 (880)
64 PRK03918 chromosome segregatio 98.7 0.00012 2.6E-09 99.6 43.5 26 1572-1597 403-428 (880)
65 KOG0250 DNA repair protein RAD 98.7 4.4E-05 9.5E-10 100.0 36.0 136 1501-1644 355-491 (1074)
66 PHA02562 46 endonuclease subun 98.6 3.4E-05 7.4E-10 99.6 35.3 50 1546-1595 351-400 (562)
67 COG4942 Membrane-bound metallo 98.6 0.00016 3.5E-09 87.9 38.0 80 1520-1599 163-242 (420)
68 KOG0996 Structural maintenance 98.6 8.5E-05 1.8E-09 97.2 37.3 184 1430-1629 402-595 (1293)
69 PHA02562 46 endonuclease subun 98.6 4.8E-05 1E-09 98.3 34.3 201 1360-1561 172-394 (562)
70 KOG1029 Endocytic adaptor prot 98.6 5E-05 1.1E-09 94.9 31.6 107 1465-1575 416-522 (1118)
71 PF00038 Filament: Intermediat 98.6 0.00028 6E-09 84.7 37.8 33 1368-1400 3-35 (312)
72 TIGR00606 rad50 rad50. This fa 98.6 0.00014 3E-09 102.6 40.5 235 1358-1597 832-1091(1311)
73 KOG0976 Rho/Rac1-interacting s 98.6 0.00022 4.8E-09 89.4 36.6 125 1517-1642 269-403 (1265)
74 KOG0976 Rho/Rac1-interacting s 98.5 0.00044 9.5E-09 86.8 37.6 75 1523-1597 321-395 (1265)
75 PF12128 DUF3584: Protein of u 98.5 0.00024 5.2E-09 99.2 40.0 31 1432-1462 677-707 (1201)
76 KOG0933 Structural maintenance 98.5 0.00028 6.1E-09 91.2 36.4 112 1440-1555 762-873 (1174)
77 PF05701 WEMBL: Weak chloropla 98.5 0.00065 1.4E-08 87.1 40.3 27 1618-1644 421-447 (522)
78 KOG0964 Structural maintenance 98.5 0.00033 7.1E-09 90.2 36.5 26 1432-1457 264-289 (1200)
79 PF15070 GOLGA2L5: Putative go 98.5 0.00042 9.2E-09 89.4 38.5 193 1375-1575 10-231 (617)
80 KOG0995 Centromere-associated 98.5 0.00078 1.7E-08 83.7 38.7 20 1097-1116 104-123 (581)
81 PF12128 DUF3584: Protein of u 98.5 0.00053 1.2E-08 95.9 42.2 17 1628-1644 521-537 (1201)
82 KOG4673 Transcription factor T 98.5 0.00032 6.8E-09 87.2 34.7 15 1630-1644 642-656 (961)
83 KOG0977 Nuclear envelope prote 98.4 0.00013 2.9E-09 91.3 31.0 73 1560-1640 296-368 (546)
84 PF05667 DUF812: Protein of un 98.4 0.00016 3.6E-09 92.8 32.7 20 979-998 2-21 (594)
85 PF09726 Macoilin: Transmembra 98.4 0.0001 2.3E-09 96.2 31.4 22 1358-1379 428-449 (697)
86 KOG0995 Centromere-associated 98.4 0.0029 6.4E-08 78.8 41.5 101 1358-1462 255-361 (581)
87 KOG0994 Extracellular matrix g 98.4 0.001 2.2E-08 86.5 38.3 30 1432-1461 1510-1539(1758)
88 PF10174 Cast: RIM-binding pro 98.4 0.00042 9.1E-09 91.0 36.4 44 1541-1584 564-607 (775)
89 KOG4643 Uncharacterized coiled 98.4 0.00099 2.1E-08 86.3 38.1 55 1466-1520 402-459 (1195)
90 KOG0612 Rho-associated, coiled 98.4 0.00027 5.9E-09 93.1 33.9 70 1151-1230 243-320 (1317)
91 KOG0933 Structural maintenance 98.4 0.0004 8.7E-09 89.9 34.1 112 1476-1587 766-877 (1174)
92 KOG0612 Rho-associated, coiled 98.4 0.00047 1E-08 90.9 34.9 85 1501-1588 627-714 (1317)
93 PRK04778 septation ring format 98.4 0.00077 1.7E-08 87.4 36.6 14 1630-1643 453-466 (569)
94 COG1340 Uncharacterized archae 98.4 0.0029 6.3E-08 74.0 37.2 37 1386-1422 19-55 (294)
95 KOG0994 Extracellular matrix g 98.3 0.001 2.2E-08 86.4 35.5 47 81-127 119-165 (1758)
96 PRK04863 mukB cell division pr 98.3 0.002 4.4E-08 90.5 41.6 34 1299-1332 254-288 (1486)
97 PF15070 GOLGA2L5: Putative go 98.3 0.0011 2.3E-08 85.9 36.2 188 1364-1552 31-243 (617)
98 KOG4643 Uncharacterized coiled 98.3 0.00088 1.9E-08 86.7 34.5 13 1630-1642 549-563 (1195)
99 KOG4674 Uncharacterized conser 98.3 0.0013 2.7E-08 91.2 38.3 235 1359-1593 742-1009(1822)
100 COG4372 Uncharacterized protei 98.3 0.0056 1.2E-07 72.5 37.9 55 1434-1492 138-192 (499)
101 PRK04778 septation ring format 98.3 0.00081 1.8E-08 87.2 35.1 10 1249-1258 53-62 (569)
102 PF09755 DUF2046: Uncharacteri 98.3 0.0022 4.7E-08 75.4 34.5 96 1352-1450 31-130 (310)
103 KOG4673 Transcription factor T 98.3 0.0027 5.8E-08 79.3 36.5 90 1402-1491 538-631 (961)
104 PRK04863 mukB cell division pr 98.3 0.0018 4E-08 90.8 40.0 16 1627-1642 532-547 (1486)
105 KOG0964 Structural maintenance 98.3 0.00072 1.6E-08 87.2 32.5 35 1565-1599 395-429 (1200)
106 PF01576 Myosin_tail_1: Myosin 98.3 1.5E-07 3.2E-12 125.9 0.0 233 1364-1596 76-378 (859)
107 PF10174 Cast: RIM-binding pro 98.3 0.0035 7.5E-08 82.7 39.7 141 1499-1641 438-599 (775)
108 TIGR03185 DNA_S_dndD DNA sulfu 98.3 0.00098 2.1E-08 87.8 35.1 56 1403-1458 232-287 (650)
109 PRK01156 chromosome segregatio 98.3 0.0022 4.9E-08 87.6 39.6 33 1564-1596 413-445 (895)
110 PF05701 WEMBL: Weak chloropla 98.3 0.0036 7.7E-08 80.4 38.8 25 1432-1456 210-234 (522)
111 KOG4674 Uncharacterized conser 98.2 0.0028 6.1E-08 88.0 38.8 164 1401-1568 73-253 (1822)
112 PRK01156 chromosome segregatio 98.2 0.0041 8.9E-08 85.1 41.1 8 1201-1208 37-44 (895)
113 KOG0980 Actin-binding protein 98.2 0.0052 1.1E-07 79.2 38.2 82 1501-1582 463-544 (980)
114 KOG0963 Transcription factor/C 98.2 0.0024 5.2E-08 80.1 34.3 29 1465-1493 182-210 (629)
115 COG4942 Membrane-bound metallo 98.2 0.0023 5E-08 78.1 32.8 53 1525-1577 196-248 (420)
116 COG1340 Uncharacterized archae 98.2 0.0083 1.8E-07 70.3 35.9 53 1544-1596 198-250 (294)
117 KOG0980 Actin-binding protein 98.2 0.0031 6.7E-08 81.2 34.9 24 1433-1456 386-409 (980)
118 KOG1937 Uncharacterized conser 98.2 0.0012 2.6E-08 79.5 29.3 14 1630-1643 474-487 (521)
119 PF06160 EzrA: Septation ring 98.1 0.0058 1.3E-07 79.2 36.5 72 1381-1452 134-213 (560)
120 PF09755 DUF2046: Uncharacteri 98.1 0.014 3.1E-07 68.8 35.7 37 1361-1397 26-62 (310)
121 KOG0963 Transcription factor/C 98.1 0.028 6.1E-07 71.0 40.2 28 1430-1457 186-213 (629)
122 COG1579 Zn-ribbon protein, pos 98.1 0.0008 1.7E-08 77.0 25.0 85 1462-1548 56-140 (239)
123 COG4372 Uncharacterized protei 98.1 0.026 5.6E-07 67.1 36.9 38 1359-1396 78-115 (499)
124 KOG0946 ER-Golgi vesicle-tethe 98.1 0.0024 5.1E-08 81.5 30.2 92 1365-1456 660-760 (970)
125 PF05483 SCP-1: Synaptonemal c 98.1 0.063 1.4E-06 68.2 41.8 281 1349-1635 361-692 (786)
126 KOG0999 Microtubule-associated 98.1 0.011 2.3E-07 72.7 34.2 88 1476-1567 104-191 (772)
127 PF05667 DUF812: Protein of un 98.1 0.0098 2.1E-07 76.9 36.4 13 1630-1642 576-588 (594)
128 COG1579 Zn-ribbon protein, pos 98.0 0.00094 2E-08 76.5 23.5 108 1402-1519 32-139 (239)
129 TIGR03185 DNA_S_dndD DNA sulfu 98.0 0.016 3.5E-07 76.7 37.6 61 1401-1461 223-283 (650)
130 PF14915 CCDC144C: CCDC144C pr 98.0 0.055 1.2E-06 63.3 36.3 174 1401-1574 63-256 (305)
131 PRK09039 hypothetical protein; 97.9 0.0012 2.5E-08 80.5 23.6 80 1541-1635 125-204 (343)
132 PRK11281 hypothetical protein; 97.9 0.0054 1.2E-07 84.0 32.1 86 1404-1489 124-216 (1113)
133 KOG1937 Uncharacterized conser 97.9 0.0099 2.2E-07 71.9 29.8 30 1432-1461 292-321 (521)
134 COG4477 EzrA Negative regulato 97.9 0.028 6E-07 69.9 34.2 28 1505-1532 310-337 (570)
135 COG5185 HEC1 Protein involved 97.9 0.027 5.9E-07 68.4 33.2 13 1097-1109 123-135 (622)
136 PF07111 HCR: Alpha helical co 97.9 0.051 1.1E-06 69.5 36.8 172 1469-1642 159-348 (739)
137 COG0419 SbcC ATPase involved i 97.9 0.086 1.9E-06 72.5 42.8 35 1199-1236 37-71 (908)
138 PF01576 Myosin_tail_1: Myosin 97.9 3E-06 6.5E-11 113.5 0.0 261 1369-1642 250-535 (859)
139 KOG0982 Centrosomal protein Nu 97.9 0.0075 1.6E-07 72.4 27.7 93 1505-1597 340-440 (502)
140 COG5185 HEC1 Protein involved 97.9 0.051 1.1E-06 66.1 34.5 24 1509-1532 485-508 (622)
141 KOG0999 Microtubule-associated 97.8 0.14 3E-06 63.5 38.3 64 1364-1427 10-76 (772)
142 KOG0962 DNA repair protein RAD 97.8 0.036 7.8E-07 75.4 36.7 133 1503-1646 1007-1145(1294)
143 COG0419 SbcC ATPase involved i 97.8 0.073 1.6E-06 73.2 41.1 56 1542-1597 364-419 (908)
144 KOG0018 Structural maintenance 97.8 0.015 3.3E-07 76.7 32.0 26 1079-1104 486-511 (1141)
145 KOG1863 Ubiquitin carboxyl-ter 97.8 1.4E-05 3.1E-10 109.4 5.4 129 95-230 29-157 (1093)
146 KOG1003 Actin filament-coating 97.8 0.028 6E-07 62.0 28.7 56 1542-1597 140-195 (205)
147 PF05911 DUF869: Plant protein 97.8 0.079 1.7E-06 70.3 38.3 30 1612-1641 277-309 (769)
148 KOG4809 Rab6 GTPase-interactin 97.8 0.048 1E-06 67.5 33.5 59 1399-1457 329-390 (654)
149 PF06160 EzrA: Septation ring 97.8 0.071 1.5E-06 69.4 37.8 127 1401-1531 194-333 (560)
150 KOG0018 Structural maintenance 97.8 0.05 1.1E-06 72.1 35.5 19 1201-1219 39-57 (1141)
151 TIGR02680 conserved hypothetic 97.8 0.084 1.8E-06 75.1 40.7 136 1279-1427 179-323 (1353)
152 KOG0249 LAR-interacting protei 97.8 0.0098 2.1E-07 75.1 27.5 45 1536-1580 213-257 (916)
153 KOG0978 E3 ubiquitin ligase in 97.8 0.052 1.1E-06 70.4 34.8 98 1502-1599 501-598 (698)
154 PF12718 Tropomyosin_1: Tropom 97.7 0.0037 8E-08 67.0 20.9 60 1532-1591 80-139 (143)
155 KOG0978 E3 ubiquitin ligase in 97.7 0.1 2.2E-06 67.8 37.2 99 1501-1599 486-591 (698)
156 PF09730 BicD: Microtubule-ass 97.7 0.19 4.1E-06 66.1 39.6 18 1503-1520 278-295 (717)
157 PF05911 DUF869: Plant protein 97.7 0.011 2.3E-07 78.1 28.7 27 1573-1599 732-758 (769)
158 PF06637 PV-1: PV-1 protein (P 97.7 0.23 5E-06 59.5 36.3 43 1538-1580 284-326 (442)
159 KOG2072 Translation initiation 97.7 0.19 4.1E-06 65.2 37.9 32 1465-1496 670-701 (988)
160 PF08317 Spc7: Spc7 kinetochor 97.7 0.03 6.4E-07 68.0 30.5 60 1540-1599 210-269 (325)
161 PRK09039 hypothetical protein; 97.7 0.0057 1.2E-07 74.6 24.1 51 1548-1598 153-204 (343)
162 KOG1003 Actin filament-coating 97.7 0.036 7.8E-07 61.1 27.3 148 1435-1593 48-198 (205)
163 PRK10929 putative mechanosensi 97.7 0.065 1.4E-06 73.6 36.0 48 1443-1490 147-198 (1109)
164 TIGR02680 conserved hypothetic 97.7 0.038 8.2E-07 78.5 35.2 14 1152-1165 570-583 (1353)
165 PF05483 SCP-1: Synaptonemal c 97.7 0.39 8.5E-06 61.4 39.2 13 1619-1631 406-418 (786)
166 PF08317 Spc7: Spc7 kinetochor 97.7 0.037 8E-07 67.2 30.3 35 1359-1393 64-99 (325)
167 PF09730 BicD: Microtubule-ass 97.7 0.15 3.3E-06 67.0 37.3 77 1367-1443 81-170 (717)
168 PF15397 DUF4618: Domain of un 97.6 0.14 3E-06 59.7 32.7 94 1364-1457 8-105 (258)
169 PRK10929 putative mechanosensi 97.6 0.15 3.3E-06 70.2 38.3 24 1311-1334 14-37 (1109)
170 PF14662 CCDC155: Coiled-coil 97.6 0.068 1.5E-06 59.2 28.5 47 1547-1593 117-163 (193)
171 KOG0962 DNA repair protein RAD 97.6 0.15 3.3E-06 69.7 37.5 64 1535-1598 1011-1079(1294)
172 PF13514 AAA_27: AAA domain 97.6 0.037 8.1E-07 77.5 33.5 57 1543-1599 893-951 (1111)
173 KOG1863 Ubiquitin carboxyl-ter 97.6 6E-05 1.3E-09 103.5 5.7 132 425-569 26-157 (1093)
174 PF13514 AAA_27: AAA domain 97.5 0.48 1E-05 66.7 42.5 22 1359-1380 147-168 (1111)
175 PTZ00121 MAEBL; Provisional 97.5 0.21 4.7E-06 67.6 35.4 11 289-299 379-389 (2084)
176 PF09728 Taxilin: Myosin-like 97.5 0.46 9.9E-06 57.5 40.6 23 1618-1640 286-308 (309)
177 COG4717 Uncharacterized conser 97.5 0.8 1.7E-05 60.2 40.5 43 1358-1400 553-595 (984)
178 PF15619 Lebercilin: Ciliary p 97.5 0.029 6.3E-07 63.1 24.3 28 1570-1597 121-148 (194)
179 PF07111 HCR: Alpha helical co 97.5 0.73 1.6E-05 59.5 43.6 16 1498-1513 479-494 (739)
180 PF00769 ERM: Ezrin/radixin/mo 97.5 0.0029 6.3E-08 73.7 16.8 87 1507-1593 8-94 (246)
181 PRK11281 hypothetical protein; 97.5 0.068 1.5E-06 73.6 32.1 56 1431-1490 126-181 (1113)
182 PF10473 CENP-F_leu_zip: Leuci 97.5 0.013 2.8E-07 62.3 20.0 112 1463-1578 8-119 (140)
183 PF14915 CCDC144C: CCDC144C pr 97.5 0.42 9E-06 56.3 38.2 57 1547-1603 215-271 (305)
184 PF10473 CENP-F_leu_zip: Leuci 97.5 0.014 3.1E-07 62.0 20.2 129 1498-1638 11-139 (140)
185 KOG2072 Translation initiation 97.5 0.82 1.8E-05 59.6 48.0 36 1325-1360 548-583 (988)
186 PF12718 Tropomyosin_1: Tropom 97.5 0.018 4E-07 61.7 21.3 40 1547-1586 102-141 (143)
187 KOG1853 LIS1-interacting prote 97.5 0.044 9.6E-07 61.9 24.6 25 1575-1599 134-158 (333)
188 PF14662 CCDC155: Coiled-coil 97.4 0.14 3E-06 56.8 27.9 42 1379-1420 11-55 (193)
189 KOG2129 Uncharacterized conser 97.4 0.32 6.9E-06 58.7 32.7 54 1539-1602 253-306 (552)
190 PF13851 GAS: Growth-arrest sp 97.4 0.088 1.9E-06 59.7 27.6 26 1508-1533 97-122 (201)
191 PF04849 HAP1_N: HAP1 N-termin 97.4 0.1 2.3E-06 61.9 28.8 88 1510-1597 205-292 (306)
192 KOG4809 Rab6 GTPase-interactin 97.4 0.071 1.5E-06 66.1 27.9 61 1430-1490 328-391 (654)
193 KOG4807 F-actin binding protei 97.4 0.13 2.9E-06 61.2 28.8 21 1622-1642 555-575 (593)
194 COG3883 Uncharacterized protei 97.4 0.1 2.2E-06 60.8 27.7 24 1434-1457 74-97 (265)
195 KOG0979 Structural maintenance 97.4 0.26 5.7E-06 65.4 34.2 83 1314-1397 118-209 (1072)
196 PF09728 Taxilin: Myosin-like 97.4 0.59 1.3E-05 56.5 36.4 54 1544-1597 242-295 (309)
197 COG4477 EzrA Negative regulato 97.4 0.53 1.1E-05 59.1 35.0 21 1624-1644 416-436 (570)
198 COG3883 Uncharacterized protei 97.4 0.092 2E-06 61.2 27.2 26 1465-1490 73-98 (265)
199 PF14988 DUF4515: Domain of un 97.4 0.2 4.3E-06 57.1 29.5 98 1361-1462 3-100 (206)
200 PF09787 Golgin_A5: Golgin sub 97.4 0.32 7E-06 62.7 34.8 52 1467-1518 276-327 (511)
201 PF04849 HAP1_N: HAP1 N-termin 97.4 0.063 1.4E-06 63.7 25.8 91 1504-1594 213-303 (306)
202 PF15619 Lebercilin: Ciliary p 97.4 0.11 2.3E-06 58.7 26.6 25 1507-1531 121-145 (194)
203 KOG0982 Centrosomal protein Nu 97.3 0.39 8.4E-06 58.4 32.2 130 1445-1580 302-437 (502)
204 KOG4807 F-actin binding protei 97.3 0.11 2.4E-06 61.7 27.2 102 1538-1639 420-537 (593)
205 TIGR01005 eps_transp_fam exopo 97.3 0.025 5.4E-07 76.1 25.6 26 1617-1642 382-407 (754)
206 KOG4593 Mitotic checkpoint pro 97.3 1 2.3E-05 58.1 37.3 25 1465-1489 165-189 (716)
207 KOG0946 ER-Golgi vesicle-tethe 97.3 0.073 1.6E-06 68.6 27.2 48 1007-1054 165-219 (970)
208 KOG0249 LAR-interacting protei 97.3 0.025 5.4E-07 71.6 22.9 40 1548-1587 218-257 (916)
209 PF05622 HOOK: HOOK protein; 97.3 5.6E-05 1.2E-09 100.3 0.0 29 1465-1493 495-523 (713)
210 KOG0243 Kinesin-like protein [ 97.3 0.54 1.2E-05 63.4 35.5 44 1290-1343 301-346 (1041)
211 KOG1924 RhoA GTPase effector D 97.3 0.058 1.3E-06 69.0 25.3 65 1285-1371 236-300 (1102)
212 PTZ00121 MAEBL; Provisional 97.3 0.7 1.5E-05 63.1 35.8 11 461-471 379-389 (2084)
213 PRK10246 exonuclease subunit S 97.3 0.97 2.1E-05 63.3 40.1 24 841-865 169-192 (1047)
214 TIGR03007 pepcterm_ChnLen poly 97.3 0.039 8.4E-07 70.7 25.0 21 1618-1638 362-382 (498)
215 KOG1899 LAR transmembrane tyro 97.3 0.052 1.1E-06 67.8 24.3 210 1398-1644 108-324 (861)
216 PF03148 Tektin: Tektin family 97.3 0.86 1.9E-05 56.8 35.7 45 1383-1427 46-90 (384)
217 PLN02939 transferase, transfer 97.2 0.095 2.1E-06 70.6 28.6 68 1464-1532 225-292 (977)
218 PF05622 HOOK: HOOK protein; 97.2 7E-05 1.5E-09 99.3 0.0 14 1101-1114 114-127 (713)
219 smart00787 Spc7 Spc7 kinetocho 97.2 0.2 4.3E-06 60.5 28.8 59 1541-1599 206-264 (312)
220 PRK10246 exonuclease subunit S 97.2 2.4 5.3E-05 59.4 43.0 13 1633-1645 492-504 (1047)
221 PF15066 CAGE1: Cancer-associa 97.2 0.33 7.1E-06 59.6 29.5 22 1202-1223 227-248 (527)
222 KOG4677 Golgi integral membran 97.2 0.17 3.8E-06 61.5 26.9 46 1465-1510 323-368 (554)
223 PF05010 TACC: Transforming ac 97.1 0.67 1.4E-05 52.8 30.1 27 1465-1491 69-95 (207)
224 TIGR01843 type_I_hlyD type I s 97.1 0.066 1.4E-06 66.7 24.6 36 1575-1611 247-282 (423)
225 KOG0979 Structural maintenance 97.1 0.53 1.1E-05 62.7 32.6 51 1365-1415 184-236 (1072)
226 TIGR01843 type_I_hlyD type I s 97.1 0.1 2.2E-06 65.0 26.2 22 1569-1590 248-269 (423)
227 smart00787 Spc7 Spc7 kinetocho 97.1 0.43 9.3E-06 57.7 29.9 35 1358-1392 58-93 (312)
228 TIGR03017 EpsF chain length de 97.1 0.075 1.6E-06 67.0 24.7 23 1618-1640 349-371 (444)
229 KOG1850 Myosin-like coiled-coi 97.1 1.1 2.4E-05 52.8 40.0 49 1432-1485 129-177 (391)
230 PF05557 MAD: Mitotic checkpoi 97.1 0.00014 3E-09 96.7 0.0 18 1360-1377 66-83 (722)
231 PF06705 SF-assemblin: SF-asse 97.0 1.1 2.3E-05 52.6 35.9 46 1444-1492 67-112 (247)
232 PF04012 PspA_IM30: PspA/IM30 97.0 0.23 5.1E-06 57.0 25.6 18 1567-1584 165-182 (221)
233 TIGR03007 pepcterm_ChnLen poly 97.0 0.16 3.4E-06 65.2 26.8 30 1546-1575 317-346 (498)
234 KOG2008 BTK-associated SH3-dom 97.0 1.2 2.6E-05 52.2 31.8 13 1535-1547 158-170 (426)
235 PF09789 DUF2353: Uncharacteri 97.0 0.21 4.7E-06 59.9 25.4 19 1467-1485 81-99 (319)
236 KOG0297 TNF receptor-associate 96.9 0.00047 1E-08 85.2 3.1 81 257-337 278-365 (391)
237 PF15066 CAGE1: Cancer-associa 96.9 0.68 1.5E-05 57.0 29.0 23 903-925 44-66 (527)
238 PF09787 Golgin_A5: Golgin sub 96.9 0.33 7.1E-06 62.7 28.6 50 1438-1487 279-328 (511)
239 KOG2129 Uncharacterized conser 96.9 0.37 8E-06 58.2 26.1 98 1318-1418 41-153 (552)
240 PF06008 Laminin_I: Laminin Do 96.9 1.5 3.2E-05 51.9 31.7 13 1405-1417 56-68 (264)
241 KOG4677 Golgi integral membran 96.9 1.1 2.4E-05 54.9 29.8 58 1474-1531 325-382 (554)
242 TIGR01000 bacteriocin_acc bact 96.9 0.24 5.3E-06 62.9 26.5 21 1377-1397 98-118 (457)
243 TIGR00634 recN DNA repair prot 96.9 0.25 5.4E-06 64.5 27.1 10 1201-1210 36-45 (563)
244 PF09789 DUF2353: Uncharacteri 96.8 0.37 8.1E-06 57.9 25.9 22 1576-1597 198-219 (319)
245 PF15254 CCDC14: Coiled-coil d 96.8 0.14 3.1E-06 66.0 23.5 88 1401-1488 394-485 (861)
246 PF06637 PV-1: PV-1 protein (P 96.8 1.9 4.1E-05 52.1 42.2 12 1307-1318 41-52 (442)
247 PLN03188 kinesin-12 family pro 96.8 1.2 2.6E-05 61.1 32.6 41 1094-1136 756-797 (1320)
248 PF05010 TACC: Transforming ac 96.8 1.4 3.1E-05 50.2 30.9 11 1619-1629 190-200 (207)
249 PRK10698 phage shock protein P 96.8 0.56 1.2E-05 54.2 26.0 41 1505-1545 93-133 (222)
250 KOG0992 Uncharacterized conser 96.8 2.5 5.3E-05 52.7 32.0 32 1558-1589 387-418 (613)
251 PF06705 SF-assemblin: SF-asse 96.8 1.8 3.9E-05 50.8 34.2 109 1382-1493 33-142 (247)
252 PF03148 Tektin: Tektin family 96.7 2.7 5.8E-05 52.6 38.6 26 1616-1641 322-347 (384)
253 PF14988 DUF4515: Domain of un 96.7 1.6 3.5E-05 49.9 29.0 35 1384-1418 12-46 (206)
254 PF13851 GAS: Growth-arrest sp 96.7 1.6 3.6E-05 49.6 29.4 25 1502-1526 105-129 (201)
255 KOG1853 LIS1-interacting prote 96.7 0.42 9.2E-06 54.4 23.3 24 1425-1448 44-67 (333)
256 TIGR01005 eps_transp_fam exopo 96.7 0.31 6.7E-06 65.9 27.0 16 1629-1644 457-472 (754)
257 KOG1103 Predicted coiled-coil 96.7 0.38 8.1E-06 56.7 23.5 33 1297-1329 6-39 (561)
258 PF15450 DUF4631: Domain of un 96.7 3.1 6.8E-05 52.5 37.6 41 1453-1493 239-279 (531)
259 COG1842 PspA Phage shock prote 96.6 0.48 1E-05 54.7 23.8 30 1505-1534 93-122 (225)
260 PF05557 MAD: Mitotic checkpoi 96.6 0.00052 1.1E-08 91.4 0.0 43 1377-1419 62-104 (722)
261 PLN02939 transferase, transfer 96.6 0.59 1.3E-05 63.3 27.8 54 1501-1554 230-286 (977)
262 PF15254 CCDC14: Coiled-coil d 96.6 0.88 1.9E-05 59.2 27.9 64 1430-1493 384-455 (861)
263 TIGR01000 bacteriocin_acc bact 96.6 0.46 1E-05 60.5 26.0 24 1574-1597 291-314 (457)
264 KOG2685 Cystoskeletal protein 96.6 3.1 6.8E-05 51.2 33.0 44 1383-1426 73-116 (421)
265 PRK10698 phage shock protein P 96.6 1.7 3.6E-05 50.3 27.9 19 1472-1490 92-110 (222)
266 COG4717 Uncharacterized conser 96.5 5 0.00011 53.2 35.8 32 1566-1597 773-804 (984)
267 KOG4572 Predicted DNA-binding 96.5 1.4 3E-05 57.0 28.5 23 1613-1635 1087-1109(1424)
268 KOG4360 Uncharacterized coiled 96.5 0.5 1.1E-05 58.6 24.3 90 1508-1597 202-291 (596)
269 PRK10361 DNA recombination pro 96.5 1.1 2.3E-05 56.8 28.0 56 1435-1490 69-124 (475)
270 PF10146 zf-C4H2: Zinc finger- 96.5 0.099 2.2E-06 60.3 17.6 70 1520-1596 34-103 (230)
271 PF06785 UPF0242: Uncharacteri 96.5 0.89 1.9E-05 53.9 24.8 30 1564-1593 191-220 (401)
272 KOG1899 LAR transmembrane tyro 96.5 0.76 1.6E-05 58.1 25.5 87 1443-1536 170-256 (861)
273 PF15450 DUF4631: Domain of un 96.4 4.7 0.0001 51.0 40.1 65 1463-1527 158-223 (531)
274 PRK10361 DNA recombination pro 96.3 1.3 2.9E-05 56.0 27.1 124 1403-1532 69-193 (475)
275 PF00769 ERM: Ezrin/radixin/mo 96.3 0.18 4E-06 58.9 18.6 15 1583-1597 184-198 (246)
276 KOG4302 Microtubule-associated 96.3 1.6 3.5E-05 57.0 28.5 56 1378-1433 23-86 (660)
277 COG1842 PspA Phage shock prote 96.3 1.6 3.5E-05 50.5 25.7 47 1441-1491 93-139 (225)
278 PF04012 PspA_IM30: PspA/IM30 96.3 1.6 3.5E-05 50.2 25.9 47 1441-1491 92-138 (221)
279 PF14073 Cep57_CLD: Centrosome 96.3 1.2 2.6E-05 49.3 23.1 21 1437-1457 61-81 (178)
280 PRK10869 recombination and rep 96.3 0.81 1.7E-05 59.7 25.9 11 1200-1210 35-45 (553)
281 KOG0244 Kinesin-like protein [ 96.2 1.7 3.6E-05 58.0 28.0 118 1467-1584 469-596 (913)
282 COG3206 GumC Uncharacterized p 96.2 1.7 3.6E-05 55.5 28.1 28 1617-1644 379-406 (458)
283 PF15397 DUF4618: Domain of un 96.2 3.7 8E-05 48.3 30.8 39 1557-1595 190-228 (258)
284 KOG1850 Myosin-like coiled-coi 96.2 3.9 8.5E-05 48.5 34.2 8 1684-1691 365-372 (391)
285 PF09304 Cortex-I_coil: Cortex 96.2 0.22 4.8E-06 50.3 15.6 95 1503-1597 8-102 (107)
286 PF06785 UPF0242: Uncharacteri 96.2 0.63 1.4E-05 55.1 21.5 83 1501-1586 138-220 (401)
287 PF14992 TMCO5: TMCO5 family 96.2 0.13 2.8E-06 60.4 16.1 90 1396-1490 6-95 (280)
288 KOG0243 Kinesin-like protein [ 96.2 6.5 0.00014 53.6 33.3 21 1115-1135 164-184 (1041)
289 TIGR02977 phageshock_pspA phag 96.2 1.4 3.1E-05 50.7 24.6 11 1412-1422 28-38 (219)
290 PF10168 Nup88: Nuclear pore c 96.2 0.26 5.7E-06 65.6 21.0 7 625-631 239-245 (717)
291 TIGR00618 sbcc exonuclease Sbc 96.2 11 0.00024 53.1 39.4 11 1634-1644 491-501 (1042)
292 TIGR03017 EpsF chain length de 96.1 0.99 2.1E-05 57.1 25.2 17 1475-1491 257-273 (444)
293 KOG4572 Predicted DNA-binding 96.1 2.4 5.1E-05 55.0 27.0 85 1359-1447 898-982 (1424)
294 PF15294 Leu_zip: Leucine zipp 96.1 3.5 7.7E-05 48.8 27.0 34 1563-1596 204-237 (278)
295 TIGR02977 phageshock_pspA phag 96.0 1.8 3.9E-05 49.9 24.6 17 1406-1422 50-66 (219)
296 PF04156 IncA: IncA protein; 96.0 0.25 5.3E-06 55.4 17.1 14 1476-1489 99-112 (191)
297 COG3096 MukB Uncharacterized p 96.0 8.4 0.00018 49.9 34.3 52 1546-1597 1059-1110(1480)
298 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.9 0.59 1.3E-05 49.7 18.5 55 1432-1486 65-119 (132)
299 PF10481 CENP-F_N: Cenp-F N-te 95.9 0.64 1.4E-05 53.8 19.6 52 1537-1588 79-130 (307)
300 PRK10869 recombination and rep 95.9 4.5 9.7E-05 53.0 30.1 54 1565-1629 339-392 (553)
301 PF04111 APG6: Autophagy prote 95.9 0.11 2.4E-06 62.8 14.5 25 1618-1642 166-190 (314)
302 KOG0239 Kinesin (KAR3 subfamil 95.9 0.55 1.2E-05 62.0 21.7 16 1467-1482 205-220 (670)
303 PF04094 DUF390: Protein of un 95.9 9.4 0.0002 49.8 32.7 21 994-1014 133-153 (828)
304 PRK12704 phosphodiesterase; Pr 95.8 1.9 4.1E-05 55.9 26.0 16 1589-1604 283-298 (520)
305 KOG0804 Cytoplasmic Zn-finger 95.8 0.27 5.9E-06 60.2 17.2 18 1202-1219 236-253 (493)
306 KOG1103 Predicted coiled-coil 95.8 2.9 6.3E-05 49.6 24.5 17 1340-1356 62-78 (561)
307 KOG4360 Uncharacterized coiled 95.7 1.4 3.1E-05 54.8 22.8 45 1345-1400 63-107 (596)
308 KOG4787 Uncharacterized conser 95.7 3.1 6.8E-05 52.4 25.4 25 992-1016 109-133 (852)
309 PF10481 CENP-F_N: Cenp-F N-te 95.7 0.87 1.9E-05 52.8 19.4 33 1398-1430 22-54 (307)
310 PF12795 MscS_porin: Mechanose 95.7 3.5 7.6E-05 48.1 25.2 57 1430-1490 82-138 (240)
311 PRK00106 hypothetical protein; 95.7 5.5 0.00012 51.6 28.7 14 1589-1602 298-311 (535)
312 PF14073 Cep57_CLD: Centrosome 95.7 3 6.5E-05 46.3 22.7 19 1399-1417 9-27 (178)
313 PF10212 TTKRSYEDQ: Predicted 95.6 0.52 1.1E-05 59.4 19.0 8 1155-1162 106-113 (518)
314 COG3096 MukB Uncharacterized p 95.6 12 0.00025 48.8 34.8 11 1635-1645 654-664 (1480)
315 PF04912 Dynamitin: Dynamitin 95.6 3.4 7.5E-05 51.6 26.3 44 1541-1584 324-367 (388)
316 KOG2991 Splicing regulator [RN 95.6 6.1 0.00013 45.6 29.0 150 1337-1490 44-202 (330)
317 COG2433 Uncharacterized conser 95.5 0.44 9.5E-06 60.6 17.9 35 1565-1599 472-506 (652)
318 TIGR00618 sbcc exonuclease Sbc 95.5 19 0.00042 50.8 42.4 18 1199-1216 38-55 (1042)
319 KOG0992 Uncharacterized conser 95.5 10 0.00022 47.6 34.6 24 1467-1490 233-256 (613)
320 COG0497 RecN ATPase involved i 95.4 3.9 8.5E-05 52.8 26.1 18 1612-1629 376-393 (557)
321 KOG4302 Microtubule-associated 95.4 14 0.00031 48.7 36.9 26 1465-1490 233-258 (660)
322 PF10186 Atg14: UV radiation r 95.3 1.7 3.6E-05 51.8 21.8 18 1621-1638 195-212 (302)
323 PF05384 DegS: Sensor protein 95.3 5.1 0.00011 44.0 23.0 45 1550-1594 109-153 (159)
324 KOG0240 Kinesin (SMY1 subfamil 95.2 3.6 7.9E-05 52.3 24.0 13 1284-1296 265-277 (607)
325 KOG0804 Cytoplasmic Zn-finger 95.1 0.52 1.1E-05 57.9 16.3 89 1511-1599 354-446 (493)
326 PF08614 ATG16: Autophagy prot 95.1 0.24 5.2E-06 55.9 12.9 7 1411-1417 91-97 (194)
327 PF04111 APG6: Autophagy prote 95.1 0.31 6.8E-06 59.0 14.5 27 1549-1575 109-135 (314)
328 PLN03188 kinesin-12 family pro 95.1 10 0.00022 52.7 29.2 66 1538-1603 1179-1247(1320)
329 KOG4403 Cell surface glycoprot 95.1 3.6 7.8E-05 50.4 22.5 22 1513-1534 356-377 (575)
330 PF13870 DUF4201: Domain of un 95.1 4.3 9.3E-05 45.2 22.3 26 1467-1492 44-69 (177)
331 PF09304 Cortex-I_coil: Cortex 95.0 1.3 2.8E-05 45.0 15.9 47 1540-1586 59-105 (107)
332 PF04912 Dynamitin: Dynamitin 94.9 4.4 9.5E-05 50.7 24.5 20 1381-1400 92-111 (388)
333 PF13870 DUF4201: Domain of un 94.9 7.9 0.00017 43.1 24.9 28 1499-1526 44-71 (177)
334 PF12795 MscS_porin: Mechanose 94.9 7.1 0.00015 45.6 24.6 86 1404-1489 81-174 (240)
335 PF10186 Atg14: UV radiation r 94.8 2.9 6.3E-05 49.8 21.8 10 1671-1680 217-226 (302)
336 COG4026 Uncharacterized protei 94.8 0.64 1.4E-05 52.2 14.6 10 1547-1556 164-173 (290)
337 KOG0163 Myosin class VI heavy 94.8 4.5 9.7E-05 52.5 23.4 18 851-868 421-438 (1259)
338 KOG4403 Cell surface glycoprot 94.8 3.6 7.8E-05 50.3 21.6 71 1384-1457 253-326 (575)
339 PF10146 zf-C4H2: Zinc finger- 94.7 0.88 1.9E-05 52.7 16.0 31 1501-1531 43-73 (230)
340 KOG0577 Serine/threonine prote 94.6 20 0.00043 46.3 35.5 13 758-770 247-259 (948)
341 PF04094 DUF390: Protein of un 94.4 24 0.00051 46.4 31.8 25 1581-1606 608-632 (828)
342 PRK09841 cryptic autophosphory 94.4 0.99 2.2E-05 60.8 18.1 31 1463-1493 265-295 (726)
343 PF05262 Borrelia_P83: Borreli 94.4 2.7 5.9E-05 53.5 20.6 9 1347-1355 181-189 (489)
344 COG2433 Uncharacterized conser 94.4 0.82 1.8E-05 58.2 15.8 18 1115-1132 166-183 (652)
345 PF12777 MT: Microtubule-bindi 94.3 6.7 0.00014 48.4 23.7 32 1366-1397 12-43 (344)
346 KOG0579 Ste20-like serine/thre 94.3 23 0.00051 45.9 37.7 6 1322-1327 754-759 (1187)
347 PF10212 TTKRSYEDQ: Predicted 94.3 3.1 6.7E-05 52.8 20.5 32 1563-1594 483-514 (518)
348 KOG4438 Centromere-associated 94.3 19 0.00042 44.7 34.7 38 1298-1337 32-69 (446)
349 PF10498 IFT57: Intra-flagella 94.2 0.82 1.8E-05 56.3 15.3 98 1356-1457 199-297 (359)
350 PF14992 TMCO5: TMCO5 family 94.2 1.2 2.6E-05 52.6 15.7 47 1551-1597 114-160 (280)
351 PLN03229 acetyl-coenzyme A car 94.0 5.8 0.00013 52.4 22.7 12 1406-1417 434-445 (762)
352 PF06818 Fez1: Fez1; InterPro 94.0 8.7 0.00019 43.6 21.3 14 1377-1390 11-24 (202)
353 PF15294 Leu_zip: Leucine zipp 93.9 9.9 0.00021 45.2 22.4 21 1577-1597 256-276 (278)
354 KOG4687 Uncharacterized coiled 93.8 10 0.00022 44.1 21.6 30 1369-1398 9-38 (389)
355 PF12325 TMF_TATA_bd: TATA ele 93.8 2.3 5.1E-05 44.5 15.5 33 1501-1533 27-59 (120)
356 KOG0288 WD40 repeat protein Ti 93.8 2.1 4.6E-05 52.3 17.0 20 1473-1492 7-26 (459)
357 KOG0240 Kinesin (SMY1 subfamil 93.8 15 0.00032 47.2 24.7 24 1465-1488 414-437 (607)
358 COG3206 GumC Uncharacterized p 93.7 12 0.00026 47.9 25.1 25 1573-1597 372-396 (458)
359 PF07058 Myosin_HC-like: Myosi 93.7 8.2 0.00018 45.8 20.9 19 1627-1645 145-163 (351)
360 KOG0244 Kinesin-like protein [ 93.7 38 0.00082 46.0 30.3 34 1618-1651 733-766 (913)
361 PF06818 Fez1: Fez1; InterPro 93.6 7.8 0.00017 44.0 20.1 34 1522-1555 70-103 (202)
362 PF11559 ADIP: Afadin- and alp 93.6 3.3 7.1E-05 44.9 17.0 9 1409-1417 74-82 (151)
363 KOG2891 Surface glycoprotein [ 93.6 7.1 0.00015 45.3 19.8 37 1563-1599 382-418 (445)
364 PF09731 Mitofilin: Mitochondr 93.6 19 0.0004 47.6 27.1 26 842-867 30-55 (582)
365 PF12252 SidE: Dot/Icm substra 93.6 40 0.00088 46.0 31.1 17 1339-1355 1010-1026(1439)
366 KOG0577 Serine/threonine prote 93.5 32 0.00069 44.6 37.9 31 842-872 288-318 (948)
367 KOG2685 Cystoskeletal protein 93.5 26 0.00057 43.5 34.2 43 1380-1422 74-119 (421)
368 COG4026 Uncharacterized protei 93.3 2.2 4.7E-05 48.2 15.0 51 1544-1594 154-204 (290)
369 PRK11519 tyrosine kinase; Prov 93.3 2.2 4.7E-05 57.6 18.2 31 1463-1493 265-295 (719)
370 PF09738 DUF2051: Double stran 93.2 7.5 0.00016 47.0 20.5 28 1465-1492 219-246 (302)
371 PF07889 DUF1664: Protein of u 93.1 1.7 3.7E-05 45.8 13.2 83 1406-1492 41-123 (126)
372 KOG2991 Splicing regulator [RN 93.1 21 0.00045 41.5 28.3 21 1467-1487 138-158 (330)
373 PF15358 TSKS: Testis-specific 93.1 1 2.2E-05 54.5 12.7 79 1520-1598 127-205 (558)
374 PF05276 SH3BP5: SH3 domain-bi 93.0 23 0.00049 41.6 29.2 23 1577-1599 180-202 (239)
375 COG0497 RecN ATPase involved i 93.0 35 0.00076 44.5 27.1 11 1201-1211 36-46 (557)
376 PF03999 MAP65_ASE1: Microtubu 93.0 0.69 1.5E-05 61.1 12.7 12 1522-1533 327-338 (619)
377 PF11932 DUF3450: Protein of u 93.0 3.4 7.5E-05 48.5 17.2 22 1512-1533 43-64 (251)
378 PF08580 KAR9: Yeast cortical 93.0 45 0.00099 44.9 37.2 51 1295-1356 26-76 (683)
379 PLN03229 acetyl-coenzyme A car 92.9 42 0.0009 44.9 27.6 59 1007-1069 225-287 (762)
380 PRK06569 F0F1 ATP synthase sub 92.8 6.3 0.00014 43.2 17.4 56 1348-1409 22-77 (155)
381 KOG1265 Phospholipase C [Lipid 92.8 15 0.00032 49.0 23.2 27 1381-1407 944-970 (1189)
382 PF12072 DUF3552: Domain of un 92.8 21 0.00046 40.7 27.5 16 1441-1456 79-94 (201)
383 PF11559 ADIP: Afadin- and alp 92.8 5.7 0.00012 43.1 17.4 7 1619-1625 138-144 (151)
384 PF10498 IFT57: Intra-flagella 92.8 4.3 9.4E-05 50.2 18.2 24 1465-1488 241-264 (359)
385 KOG4460 Nuclear pore complex, 92.6 11 0.00023 47.8 20.7 12 1359-1370 531-542 (741)
386 PF07798 DUF1640: Protein of u 92.6 7.4 0.00016 43.5 18.4 17 1340-1356 19-35 (177)
387 PF02841 GBP_C: Guanylate-bind 92.5 29 0.00063 41.9 24.5 9 1630-1638 289-297 (297)
388 PF05266 DUF724: Protein of un 92.3 4.2 9.1E-05 46.0 15.8 59 1541-1599 126-184 (190)
389 PF15272 BBP1_C: Spindle pole 92.1 8.1 0.00017 43.7 17.5 36 1438-1473 80-115 (196)
390 KOG2077 JNK/SAPK-associated pr 92.0 30 0.00064 44.2 23.5 75 1514-1588 304-378 (832)
391 PF06548 Kinesin-related: Kine 92.0 42 0.00091 42.2 33.3 69 1536-1604 407-478 (488)
392 PF15035 Rootletin: Ciliary ro 92.0 18 0.00039 40.7 20.3 22 1435-1456 18-39 (182)
393 KOG0297 TNF receptor-associate 92.0 0.09 2E-06 65.4 2.6 82 88-169 275-365 (391)
394 PF09744 Jnk-SapK_ap_N: JNK_SA 91.8 10 0.00023 41.7 17.7 31 1303-1335 4-34 (158)
395 PRK11519 tyrosine kinase; Prov 91.8 6.3 0.00014 53.3 19.8 12 1321-1332 207-218 (719)
396 KOG4787 Uncharacterized conser 91.8 38 0.00083 43.4 24.2 73 1381-1457 330-410 (852)
397 TIGR03794 NHPM_micro_HlyD NHPM 91.8 11 0.00025 47.5 20.9 22 1576-1597 229-250 (421)
398 PF05262 Borrelia_P83: Borreli 91.8 10 0.00022 48.6 20.0 13 1361-1373 180-192 (489)
399 PF10234 Cluap1: Clusterin-ass 91.6 14 0.00031 43.8 19.7 89 1509-1597 167-255 (267)
400 PF12325 TMF_TATA_bd: TATA ele 91.6 7.5 0.00016 40.8 15.6 19 1469-1487 20-38 (120)
401 PRK09841 cryptic autophosphory 91.6 6.6 0.00014 53.1 19.5 13 1321-1333 207-219 (726)
402 PF12240 Angiomotin_C: Angiomo 91.3 12 0.00027 42.3 17.8 21 1577-1597 146-166 (205)
403 PF11802 CENP-K: Centromere-as 91.3 28 0.00061 41.2 21.3 33 1577-1609 157-189 (268)
404 KOG1923 Rac1 GTPase effector F 91.3 2.7 6E-05 54.9 14.4 16 1353-1368 66-81 (830)
405 KOG4438 Centromere-associated 91.1 50 0.0011 41.3 34.0 13 1304-1316 80-92 (446)
406 KOG0163 Myosin class VI heavy 91.1 65 0.0014 42.6 26.9 21 1198-1218 705-725 (1259)
407 KOG0288 WD40 repeat protein Ti 91.1 15 0.00033 45.3 19.4 60 1540-1599 49-108 (459)
408 KOG0239 Kinesin (KAR3 subfamil 91.0 17 0.00037 48.6 21.8 40 1318-1358 75-114 (670)
409 PF02994 Transposase_22: L1 tr 91.0 0.54 1.2E-05 58.3 7.8 20 1438-1457 142-161 (370)
410 PF15272 BBP1_C: Spindle pole 90.9 21 0.00046 40.5 19.2 72 1468-1549 78-149 (196)
411 KOG2412 Nuclear-export-signal 90.9 48 0.001 42.6 23.9 24 1612-1635 320-343 (591)
412 TIGR01010 BexC_CtrB_KpsE polys 90.8 22 0.00048 44.0 21.7 54 1405-1458 174-232 (362)
413 PF10267 Tmemb_cc2: Predicted 90.8 6.5 0.00014 49.0 16.6 20 1431-1450 274-293 (395)
414 PF04949 Transcrip_act: Transc 90.5 28 0.00061 37.5 18.9 36 1382-1417 33-68 (159)
415 KOG0517 Beta-spectrin [Cytoske 90.5 1.1E+02 0.0025 44.4 35.3 323 1312-1641 1166-1582(2473)
416 cd07651 F-BAR_PombeCdc15_like 90.3 42 0.00091 39.1 24.4 61 1360-1420 58-119 (236)
417 KOG0993 Rab5 GTPase effector R 90.3 55 0.0012 40.5 28.3 89 1339-1441 283-371 (542)
418 PRK14474 F0F1 ATP synthase sub 90.3 40 0.00086 39.9 22.0 22 1668-1690 208-229 (250)
419 PRK00409 recombination and DNA 90.2 7 0.00015 53.2 17.8 23 840-862 149-171 (782)
420 PF11180 DUF2968: Protein of u 90.1 7.5 0.00016 43.6 14.7 60 1538-1597 125-184 (192)
421 TIGR01069 mutS2 MutS2 family p 90.1 6 0.00013 53.7 17.0 27 838-864 142-168 (771)
422 PF03915 AIP3: Actin interacti 90.1 9.8 0.00021 48.0 17.5 24 1468-1491 209-232 (424)
423 KOG0579 Ste20-like serine/thre 90.0 75 0.0016 41.7 34.2 23 1618-1640 1009-1031(1187)
424 PRK00409 recombination and DNA 90.0 7.9 0.00017 52.7 18.1 36 1358-1393 498-533 (782)
425 PF04642 DUF601: Protein of un 90.0 3.2 6.9E-05 47.6 11.8 66 1445-1511 184-249 (311)
426 KOG4451 Uncharacterized conser 89.9 32 0.00068 39.4 19.2 22 1654-1675 231-255 (286)
427 PF03962 Mnd1: Mnd1 family; I 89.8 9.5 0.00021 43.1 15.7 21 1437-1457 73-93 (188)
428 TIGR01010 BexC_CtrB_KpsE polys 89.8 12 0.00026 46.4 18.1 23 1469-1491 174-196 (362)
429 KOG4722 Zn-finger protein [Gen 89.7 61 0.0013 40.0 28.2 17 1220-1236 128-144 (672)
430 PF05816 TelA: Toxic anion res 89.7 60 0.0013 40.0 35.0 68 1360-1427 82-149 (333)
431 KOG2077 JNK/SAPK-associated pr 89.6 74 0.0016 40.9 27.6 56 1502-1557 320-375 (832)
432 PF09731 Mitofilin: Mitochondr 89.5 85 0.0018 41.5 28.5 8 1137-1144 32-39 (582)
433 PF10267 Tmemb_cc2: Predicted 89.5 13 0.00028 46.5 17.8 22 1467-1488 271-292 (395)
434 PF04108 APG17: Autophagy prot 89.4 72 0.0016 40.5 35.3 57 1360-1416 42-99 (412)
435 COG5022 Myosin heavy chain [Cy 89.4 98 0.0021 44.2 27.0 52 813-869 364-415 (1463)
436 KOG4364 Chromatin assembly fac 89.3 13 0.00029 48.0 17.7 19 1554-1572 360-378 (811)
437 PRK06569 F0F1 ATP synthase sub 89.3 22 0.00048 39.0 17.3 12 1445-1456 93-104 (155)
438 PF06548 Kinesin-related: Kine 89.3 71 0.0015 40.3 30.7 15 1220-1234 101-115 (488)
439 PF03962 Mnd1: Mnd1 family; I 89.2 8.1 0.00017 43.7 14.6 33 1318-1355 10-42 (188)
440 PRK09174 F0F1 ATP synthase sub 89.1 23 0.0005 40.6 18.3 28 1358-1385 73-100 (204)
441 KOG1265 Phospholipase C [Lipid 89.0 69 0.0015 43.3 23.8 37 1139-1175 770-816 (1189)
442 PF09403 FadA: Adhesion protei 89.0 11 0.00024 39.9 14.3 30 1444-1473 24-53 (126)
443 PF12240 Angiomotin_C: Angiomo 89.0 46 0.00099 37.9 19.7 38 1524-1561 128-165 (205)
444 TIGR01069 mutS2 MutS2 family p 89.0 9.1 0.0002 52.1 17.4 14 842-855 111-124 (771)
445 PF11855 DUF3375: Protein of u 89.0 38 0.00082 43.8 22.2 29 1571-1599 281-309 (478)
446 KOG3595 Dyneins, heavy chain [ 88.9 1.5E+02 0.0032 43.5 34.3 62 1074-1135 415-477 (1395)
447 PF12329 TMF_DNA_bd: TATA elem 88.9 3.9 8.4E-05 39.4 10.0 59 1512-1570 6-64 (74)
448 smart00502 BBC B-Box C-termina 88.8 30 0.00065 35.4 18.0 16 1469-1484 76-91 (127)
449 PRK15178 Vi polysaccharide exp 88.7 16 0.00035 46.2 18.0 27 1434-1460 243-269 (434)
450 KOG2891 Surface glycoprotein [ 88.6 36 0.00078 39.8 18.9 20 1126-1145 42-62 (445)
451 PF10211 Ax_dynein_light: Axon 88.6 31 0.00067 39.1 18.6 27 1465-1491 127-153 (189)
452 TIGR03794 NHPM_micro_HlyD NHPM 88.4 34 0.00074 43.3 21.2 17 1544-1560 232-248 (421)
453 PF15233 SYCE1: Synaptonemal c 88.4 20 0.00044 37.8 15.3 15 1470-1484 18-32 (134)
454 COG1382 GimC Prefoldin, chaper 88.3 11 0.00024 39.5 13.5 26 1402-1427 21-46 (119)
455 PF09403 FadA: Adhesion protei 88.1 16 0.00034 38.8 14.8 30 1463-1492 91-120 (126)
456 PRK06568 F0F1 ATP synthase sub 88.1 24 0.00053 38.7 16.8 22 1358-1379 24-45 (154)
457 PF05278 PEARLI-4: Arabidopsis 88.1 30 0.00065 41.1 18.4 28 1465-1492 214-241 (269)
458 PF05266 DUF724: Protein of un 88.0 10 0.00022 43.0 14.3 55 1537-1591 129-183 (190)
459 KOG4460 Nuclear pore complex, 87.9 62 0.0014 41.4 21.6 16 380-395 138-153 (741)
460 CHL00118 atpG ATP synthase CF0 87.8 32 0.00068 37.7 17.7 29 1358-1386 42-70 (156)
461 PF05149 Flagellar_rod: Parafl 87.8 72 0.0016 38.5 35.6 34 1428-1461 47-80 (289)
462 PF05276 SH3BP5: SH3 domain-bi 87.6 66 0.0014 37.9 30.8 75 1512-1586 129-203 (239)
463 PTZ00332 paraflagellar rod pro 87.6 94 0.002 39.6 33.6 69 1501-1569 442-514 (589)
464 PRK08476 F0F1 ATP synthase sub 87.5 41 0.00089 36.3 18.0 48 1358-1409 27-74 (141)
465 PF15290 Syntaphilin: Golgi-lo 87.4 19 0.00041 42.5 16.0 37 1445-1490 106-142 (305)
466 KOG4552 Vitamin-D-receptor int 87.4 51 0.0011 37.3 18.5 23 1669-1691 165-190 (272)
467 COG4913 Uncharacterized protei 87.4 1.2E+02 0.0025 40.4 26.9 241 1383-1636 616-874 (1104)
468 KOG2751 Beclin-like protein [S 87.4 14 0.00031 45.9 15.8 9 1621-1629 302-310 (447)
469 TIGR02338 gimC_beta prefoldin, 87.3 13 0.00028 38.3 13.5 6 1542-1547 70-75 (110)
470 COG5293 Predicted ATPase [Gene 87.3 93 0.002 39.3 28.0 209 1363-1572 204-446 (591)
471 PF13863 DUF4200: Domain of un 87.2 41 0.00089 35.1 18.4 19 1568-1586 89-107 (126)
472 PRK14474 F0F1 ATP synthase sub 87.2 35 0.00075 40.4 18.7 135 1361-1499 28-168 (250)
473 PF07058 Myosin_HC-like: Myosi 87.1 38 0.00083 40.5 18.3 141 1443-1584 3-160 (351)
474 KOG2751 Beclin-like protein [S 87.1 20 0.00042 44.7 16.7 126 1431-1560 141-267 (447)
475 COG1382 GimC Prefoldin, chaper 87.1 20 0.00043 37.7 14.4 100 1451-1551 7-110 (119)
476 PRK15178 Vi polysaccharide exp 87.1 59 0.0013 41.4 21.5 159 1372-1532 214-386 (434)
477 PF14197 Cep57_CLD_2: Centroso 87.1 6.2 0.00013 37.5 10.0 68 1501-1568 2-69 (69)
478 PRK06975 bifunctional uroporph 87.0 20 0.00044 48.0 18.7 154 1413-1593 344-501 (656)
479 PF05278 PEARLI-4: Arabidopsis 87.0 24 0.00052 41.9 16.8 108 1478-1585 148-260 (269)
480 PF13949 ALIX_LYPXL_bnd: ALIX 87.0 76 0.0017 38.0 31.7 256 1363-1640 7-284 (296)
481 PRK05771 V-type ATP synthase s 86.9 39 0.00084 45.3 21.3 180 1407-1586 42-297 (646)
482 PRK03947 prefoldin subunit alp 86.9 14 0.0003 39.6 14.0 98 1492-1589 1-137 (140)
483 cd00632 Prefoldin_beta Prefold 86.9 13 0.00029 37.9 13.2 85 1390-1478 2-104 (105)
484 PF04582 Reo_sigmaC: Reovirus 86.7 1 2.3E-05 54.1 5.8 148 1426-1581 7-154 (326)
485 KOG3771 Amphiphysin [Intracell 86.6 1E+02 0.0023 39.2 26.0 239 1446-1696 29-300 (460)
486 PF07889 DUF1664: Protein of u 86.6 15 0.00032 39.0 13.5 87 1474-1567 38-124 (126)
487 KOG1924 RhoA GTPase effector D 86.5 1.3E+02 0.0029 40.2 35.3 470 1179-1700 66-577 (1102)
488 PF11180 DUF2968: Protein of u 86.5 14 0.0003 41.6 13.8 88 1498-1585 99-186 (192)
489 KOG3759 Uncharacterized RUN do 86.4 13 0.00029 46.1 14.7 179 1397-1585 67-252 (621)
490 KOG4429 Uncharacterized conser 86.4 79 0.0017 37.5 25.8 296 1356-1681 16-356 (421)
491 KOG4687 Uncharacterized coiled 86.3 77 0.0017 37.3 28.3 219 1369-1595 9-253 (389)
492 KOG1118 Lysophosphatidic acid 86.2 33 0.00071 41.1 17.2 157 1511-1679 114-303 (366)
493 PF09744 Jnk-SapK_ap_N: JNK_SA 86.1 33 0.00071 37.9 16.4 120 1433-1556 36-155 (158)
494 PF15290 Syntaphilin: Golgi-lo 86.0 15 0.00033 43.2 14.3 100 1435-1545 70-169 (305)
495 PRK13453 F0F1 ATP synthase sub 85.9 43 0.00093 37.3 17.7 118 1348-1483 30-147 (173)
496 smart00502 BBC B-Box C-termina 85.9 35 0.00076 34.9 16.1 101 1389-1489 2-103 (127)
497 cd07666 BAR_SNX7 The Bin/Amphi 85.9 81 0.0018 37.3 25.4 170 1440-1635 54-228 (243)
498 PF13747 DUF4164: Domain of un 85.8 15 0.00032 36.7 12.4 82 1476-1558 5-86 (89)
499 PF06120 Phage_HK97_TLTM: Tail 85.8 92 0.002 37.9 21.2 160 1429-1597 44-203 (301)
500 PRK13454 F0F1 ATP synthase sub 85.8 39 0.00084 38.0 17.3 116 1348-1481 43-158 (181)
No 1
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=100.00 E-value=4.6e-73 Score=758.50 Aligned_cols=437 Identities=29% Similarity=0.451 Sum_probs=350.3
Q ss_pred hhHHHHHHHhhcceeecCCCCCCCc---hhHHHHhh-------cccHHHHHHHHhhhhhccCChHHHhhhcCCccccCCC
Q 000301 761 EEDIVRNLLSRAGFHLTYGDNPSQP---QVTLREKL-------LMDAGAIAGFLTGLRVYLDDPAKAKRLLLPTKLSGSD 830 (1701)
Q Consensus 761 ~~~~f~~~l~~~g~~l~~g~~~~~~---q~~~~~~~-------~~~~~~i~~f~~gl~~~~~~~~~~~~~llp~~~~~~~ 830 (1701)
++++|+.+|++||++|..|++||++ ||.|++|| +.||.+|++|++||+.||+|+++|++|||||.+.+++
T Consensus 44 ~~~~f~~~L~~aG~~L~~g~~~~~l~~d~i~f~~kL~~~L~~~~~yp~~v~~F~~gl~~~i~~~~~~~~~Ll~~~~~~~~ 123 (1426)
T PF14631_consen 44 NDSVFESVLKDAGVTLKTGEGPNVLSVDQIIFQKKLRKILRKSPSYPENVEEFLSGLESYIEDRDNFRNCLLPCCPSQNA 123 (1426)
T ss_dssp ---HHHHHHHHTTEE---TTS--EESS-TTHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHTTSHHHHHHHSSB-B-----
T ss_pred CccHHHHHHHHcCeeeCCCCCCceeccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcCHHHHHHHhcCCCccccc
Confidence 5689999999999999999999998 99999998 6899999999999999999999999999999988744
Q ss_pred CcccccCCCCchhHHHhhhcchhhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCccc
Q 000301 831 GKKVAKTDESSPSVMNLLMGVKVLQQAIIDLLLDIMVECCQPSDGNYYGDSSDANSKPPLDANGGARPLEADRENGASES 910 (1701)
Q Consensus 831 ~~~~~~~~~~~~sl~~ll~~v~~lq~~ii~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1701)
+. .+....+++||||+||||+.||++||++||+||+||+..+
T Consensus 124 ~~-~~~~~~~~~Slir~LL~i~~lQ~~~i~~LleKl~e~~~~~------------------------------------- 165 (1426)
T PF14631_consen 124 EA-ESIGQSSQESLIRLLLGIDFLQPALIEMLLEKLPEFAFES------------------------------------- 165 (1426)
T ss_dssp ------------BHHHHHHHSTTTHHHHHHHHHHHHHHHHS---------------------------------------
T ss_pred cc-ccccccccHHHHHHHhCCccccHHHHHHHHHHHHHHHhcc-------------------------------------
Confidence 33 2455668899999999999999999999999999999774
Q ss_pred cccccccccCCCCCCCCCcccccccCCCCcccccccCCCCCCCCCCcCCCCCcccccccccCCCchhHHHHHHHHHhhhh
Q 000301 911 AQFPLFERLDSGADDNSTTSAVQSSDLSGIDIAEKALPGQPIFPPETSAGGSLESASFRSKTKWPEQSAELLGLIVNSLR 990 (1701)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~ 990 (1701)
.+..|.++| +||+||||
T Consensus 166 ------------------------~~~~~~~~~---------------------------------------~Lil~Qlr 182 (1426)
T PF14631_consen 166 ------------------------SGSDGINIP---------------------------------------RLILNQLR 182 (1426)
T ss_dssp --------------------------TT---HH---------------------------------------HHHHGGGT
T ss_pred ------------------------ccCCCCChH---------------------------------------HHHHHHhh
Confidence 122345666 99999999
Q ss_pred hccccCCCCCCCCCCCchhHHHHHHHhccCCCCcchhHHhhccccccCCCchHHHHHHHHHhccCCCCCccchhHHhhhc
Q 000301 991 ALDGAVPQGCPEPRRRPQSAQKISLVLDKAPKHLQPDLVALVPKLVEHSEHPLAADALIERLQKSDAEPALRMPVFVALS 1070 (1701)
Q Consensus 991 ~ld~~~~~~~~~~~~~~~~~~k~~~~l~~~p~~lq~d~i~~~p~~~~~~~h~~~a~~l~~~l~~~~~~~~l~~p~~~als 1070 (1701)
|||++|++ .+++.||++||++||.++|+|||++||+|++|++|..|+.+|.++|+++ +.|++|||||||
T Consensus 183 wLd~i~d~--------~~l~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds~h~~v~~~L~~ll~~~---~~L~~~iLd~Ls 251 (1426)
T PF14631_consen 183 WLDRIVDS--------EELTDKLFEVLSIAPVELQKEIISSLPEILDDSQHDEVVEELLELLQEN---PELTVPILDALS 251 (1426)
T ss_dssp T-S--SSH--------HHHHHHHHHHHHHS-TTTHHHHHHTHHHHS-GGGHHHHHHHHHHHHHH----STTHHHHHHHHH
T ss_pred ccccccCH--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcC---CchhhhHHHHHh
Confidence 99999999 9999999999999999999999999999999999999999999999995 899999999999
Q ss_pred cccCChHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccccccchHHHHHHHHHHHH------------------hcCCC
Q 000301 1071 QLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFIFKAASQCQHLPEAVRSVRVRLK------------------NLGAE 1132 (1701)
Q Consensus 1071 ~l~~~~~~~~~v~~~~~~~l~~~~~e~l~~~i~f~~~~~~~~~~~~~~~~~~r~~l~------------------~~~~~ 1132 (1701)
+|+|+++++++||+.+|+.|++++.|+||++|+|||++++... ..++|..+|.+|+ +.|.+
T Consensus 252 ~L~Ls~~~l~~vr~~vl~~L~s~~~e~LP~lirFLL~s~t~~d-a~evI~~LR~~L~~~~~v~~~~~~~s~~~~k~~~~~ 330 (1426)
T PF14631_consen 252 NLNLSPELLEEVREKVLEKLSSVDLEDLPVLIRFLLQSITPSD-AVEVISELRENLDFEQCVLPSRIQASQRKLKNKGNA 330 (1426)
T ss_dssp HS---HHHHHHHHHHHHHSTTSS-TTHHHHHHHHHHHS-SSTT-HHHHHHHHHHHHH-----------------------
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHhCCccc-HHHHHHHHHHHccccccccchhhcccccccccCccc
Confidence 9999999999999999999999999999999999999987666 4567777777664 44444
Q ss_pred CCh------------hHHHHHHhhhccChhhHHHHHHhhccCcCCCCCCCCCCCcccccCCCCCCCCccchhhhhhhccc
Q 000301 1133 VSP------------CVLDFLSKTVNSWGDVAETILRDIDCDDDFGDNCSTMPSGLFLFGENGPTSDSLHVMDEQAFRAT 1200 (1701)
Q Consensus 1133 ~~~------------~~~~~~~~~v~~~~~~~e~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1200 (1701)
.++ +++|+|+++|+++++++|||+|+|++..+..+
T Consensus 331 ~~~~~~~~s~~~~~~lil~~lks~lr~~k~l~eawiK~I~~~~~~~~--------------------------------- 377 (1426)
T PF14631_consen 331 SSSGNQENSSQDCEKLILDVLKSGLRFSKDLSEAWIKAIESLEDASD--------------------------------- 377 (1426)
T ss_dssp --------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHGGGSTT---------------------------------
T ss_pred ccccccccccccHHHHHHHHHHHHHHhccHHHHHHHHHHhcCCCccc---------------------------------
Confidence 332 69999999999999999999999999987766
Q ss_pred cchhhHHHHHHHhcCC-chhHHHHHHHHHHHhcCcchhHHHHHHHHHHhhhcccCCCCcccccccccccccccccccccc
Q 000301 1201 RHFSDIYILIEMLSIP-CIAVEAAQTFERAVARGTIVAQSIALVLERRLAQRLNFNPGFVAENFQHTDVVVEGEQLIVQR 1279 (1701)
Q Consensus 1201 ~~~~d~~~l~~~~s~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1279 (1701)
|+++|+|||++||+++ ..++.|+++|++||+.|+|++++|.- +| . .|..|++
T Consensus 378 hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g~it~~ll~~--------------~f-~------------~~~~vL~ 430 (1426)
T PF14631_consen 378 HKVIDLWLLLILYSINEDNRKSIEKILKKKIKSGHITEQLLDQ--------------TF-K------------GHSEVLK 430 (1426)
T ss_dssp --THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-S-HHHHHH--------------HH-H------------HHHHHHT
T ss_pred cchHHHHHHHHHHcCCccchHHHHHHHHHHHHhCcccHHHHHH--------------HH-h------------hhHHHHH
Confidence 9999999999999998 56799999999999999999999932 33 1 3456889
Q ss_pred hhhhHHHHHHHHHhcCcChhHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCCCCcccccchHHHHHHHHhhhcc-
Q 000301 1280 DDFTCVLGLAETLALSRDIRVREFVKILYTILLKWYPDESYRGRMLKRLVDRATSTTESSRGVDLDLEILVILVCEEQE- 1358 (1701)
Q Consensus 1280 ~~f~~~l~la~~l~~s~~~~v~~f~~~~y~~~f~~~~~~~~~~~~~~~lv~~~~s~~~~~~ev~~~l~vL~~l~~~~~~- 1358 (1701)
+||+++|.||+.|++|.|+.|++||++||+++|+.| |+|||||||++||+|+||| +..||+.+|+||+.|+..+++
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f-ds~~qqeVv~~Lvthi~sg--~~~ev~~aL~vL~~L~~~~~~~ 507 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF-DSYCQQEVVGALVTHIGSG--NSQEVDAALDVLCELAEKNPSE 507 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999999999999999999999 8999999999999999999 899999999999999988875
Q ss_pred ------ccchhHHHHHHHHHH
Q 000301 1359 ------IIRPVLSMLREVAEL 1373 (1701)
Q Consensus 1359 ------~VKPlLq~lRqe~E~ 1373 (1701)
+++++|+++..-...
T Consensus 508 l~~fa~~l~giLD~l~~Ls~~ 528 (1426)
T PF14631_consen 508 LQPFATFLKGILDYLDNLSLQ 528 (1426)
T ss_dssp HHHTHHHHHGGGGGGGG--HH
T ss_pred HHHHHHHHHHHHHHHhcCCHH
Confidence 889999999876555
No 2
>KOG4712 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.2e-51 Score=498.25 Aligned_cols=429 Identities=24% Similarity=0.377 Sum_probs=381.9
Q ss_pred hhHHHHH--HHhhcceeecCCCCCCCc---hhHHHHhh-------cccHHHHHHHHhhhhhccCChHHHhhhcCCccccC
Q 000301 761 EEDIVRN--LLSRAGFHLTYGDNPSQP---QVTLREKL-------LMDAGAIAGFLTGLRVYLDDPAKAKRLLLPTKLSG 828 (1701)
Q Consensus 761 ~~~~f~~--~l~~~g~~l~~g~~~~~~---q~~~~~~~-------~~~~~~i~~f~~gl~~~~~~~~~~~~~llp~~~~~ 828 (1701)
-..||.+ +|...|..|..|...+|. -..||.++ +|||+.+..|+.||+.|+.||+.++||+|.|..-+
T Consensus 40 ~~~If~~isll~~~~~~l~~~~s~~q~~~~L~~fq~~~~~tlr~~~~~p~~~~~fv~gl~~yi~d~d~~r~~~Ls~~Sl~ 119 (1335)
T KOG4712|consen 40 NDSIFVKLSLLKISGIILKTGESQNQLAVDLIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCESLQ 119 (1335)
T ss_pred hHHHHHHHHHhhccCccCCCcchhhhcccccHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcCcchhhhhhhhHhhhh
Confidence 3567764 688999999999999987 44455555 89999999999999999999999999999987764
Q ss_pred CCCcccccCCCCchhHHHhhhcchhhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCc
Q 000301 829 SDGKKVAKTDESSPSVMNLLMGVKVLQQAIIDLLLDIMVECCQPSDGNYYGDSSDANSKPPLDANGGARPLEADRENGAS 908 (1701)
Q Consensus 829 ~~~~~~~~~~~~~~sl~~ll~~v~~lq~~ii~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 (1701)
.++.++++||+++|+||++|||+|+.+|||++||+.+...
T Consensus 120 ------~~~~~~~ksl~~~ll~~~~lq~~i~~~l~ekLpeyf~~~~---------------------------------- 159 (1335)
T KOG4712|consen 120 ------DMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENK---------------------------------- 159 (1335)
T ss_pred ------hhhhhccHHHHHHHhhhHHHHHHHHHHHHhhchHhhcCCC----------------------------------
Confidence 3445788999999999999999999999999999998741
Q ss_pred cccccccccccCCCCCCCCCcccccccCCCCcccccccCCCCCCCCCCcCCCCCcccccccccCCCchhHHHHHHHHHhh
Q 000301 909 ESAQFPLFERLDSGADDNSTTSAVQSSDLSGIDIAEKALPGQPIFPPETSAGGSLESASFRSKTKWPEQSAELLGLIVNS 988 (1701)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~ 988 (1701)
.|. -.++++|||||+
T Consensus 160 --------------------------s~S---------------------------------------Le~~V~rlii~~ 174 (1335)
T KOG4712|consen 160 --------------------------SNS---------------------------------------LEINVPRLIVSQ 174 (1335)
T ss_pred --------------------------Ccc---------------------------------------hHHHHHHHHHHH
Confidence 000 124566999999
Q ss_pred hhhccccCCCCCCCCCCCchhHHHHHHHhccCCCCcchhHHhhccccccCCCchHHHHHHHHHhccCCCCCccchhHHhh
Q 000301 989 LRALDGAVPQGCPEPRRRPQSAQKISLVLDKAPKHLQPDLVALVPKLVEHSEHPLAADALIERLQKSDAEPALRMPVFVA 1068 (1701)
Q Consensus 989 l~~ld~~~~~~~~~~~~~~~~~~k~~~~l~~~p~~lq~d~i~~~p~~~~~~~h~~~a~~l~~~l~~~~~~~~l~~p~~~a 1068 (1701)
|||||++|+. -..+.|||+||+++|.++|+|+|+++|+|.+|++|..|...|.++|+++ |++.+.|+|.
T Consensus 175 FRwlD~~v~~--------H~~t~k~mqVisi~Pe~l~~~ii~SlPEi~gd~~~~~v~~~L~~~L~en---~s~VvAVld~ 243 (1335)
T KOG4712|consen 175 FRWLDRVVDG--------HDLTTKIMQVISIAPENLQHDIITSLPEILGDSQHADVGKELSDLLIEN---TSLVVAVLDV 243 (1335)
T ss_pred HHHHhhhcch--------hhhhhhHhhHhhcCchhhhccccCCchhhhcchhHHHHHHHHHHHHhcC---CceeeeHHhh
Confidence 9999999998 6799999999999999999999999999999999999999999999996 9999999999
Q ss_pred hccccCChHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhcc--------------ccccchHHHHHHHHHHHHhcCCCCC
Q 000301 1069 LSQLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFIFKAA--------------SQCQHLPEAVRSVRVRLKNLGAEVS 1134 (1701)
Q Consensus 1069 ls~l~~~~~~~~~v~~~~~~~l~~~~~e~l~~~i~f~~~~~--------------~~~~~~~~~~~~~r~~l~~~~~~~~ 1134 (1701)
||+|++++..+.+|.+.|..-++....|-||+.|+|++|++ ++|+ +|.-.++.+..+|-+|-.+-
T Consensus 244 ls~l~ld~~~~l~~I~lvISC~~~i~~eHlP~Li~f~lh~~t~~NVR~~is~~r~q~~v-~~~~~q~~~v~~kLkg~~s~ 322 (1335)
T KOG4712|consen 244 LSSLRLDPNFLLKVIQLVISCLSSIRLEHLPVLIKFILHSVTAMNVREVISELREQHCV-LPSRLQASQVKLKLKGRASN 322 (1335)
T ss_pred hhccccChHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhCCcccHHHHHHHHHHHHhc-ccccccHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999997 6777 77777777777777777653
Q ss_pred h-----hHHHHHHhhhccChhhHHHHHHhhccCcCCCCCCCCCCCcccccCCCCCCCCccchhhhhhhccccchhhHHHH
Q 000301 1135 P-----CVLDFLSKTVNSWGDVAETILRDIDCDDDFGDNCSTMPSGLFLFGENGPTSDSLHVMDEQAFRATRHFSDIYIL 1209 (1701)
Q Consensus 1135 ~-----~~~~~~~~~v~~~~~~~e~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 1209 (1701)
. .+||+++++|++...|..-|+++|+|...+.+ |+|.|||+|
T Consensus 323 ~esEg~~iLdv~~s~ir~~N~i~QE~ik~i~~~E~~~~---------------------------------~kV~di~~L 369 (1335)
T KOG4712|consen 323 QESEGILLLDVIKSAIRYENTISQEWIKAIENTESVSE---------------------------------HKVFDLVML 369 (1335)
T ss_pred cccchhHHHHHHHHHHHhhhHHHHHHHHHHHhhcchhh---------------------------------cccccHHHH
Confidence 3 49999999999999999999999999888877 999999999
Q ss_pred HHHhcCC-chhHHHHHHHHHHHhcCcchhHHHHHHHHHHhhhcccCCCCcccccccccccccccccccccchhhhHHHHH
Q 000301 1210 IEMLSIP-CIAVEAAQTFERAVARGTIVAQSIALVLERRLAQRLNFNPGFVAENFQHTDVVVEGEQLIVQRDDFTCVLGL 1288 (1701)
Q Consensus 1210 ~~~~s~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~l 1288 (1701)
++|++++ +.++.++++||++|++|||+++++ +. ++ +.+..+.++-+--|+.+
T Consensus 370 f~~y~~~~~~~k~i~K~~~Kk~~~~cIqE~ll---------~~-----~~-------------sv~~E~~k~L~ALi~~i 422 (1335)
T KOG4712|consen 370 FIIYSTNTQTKKYIDKVLRKKIRSGCIQEQLL---------QS-----TF-------------SVHYEVLKDLCALILSL 422 (1335)
T ss_pred HHHHHcCChhhhHHHHHHHHHHHHHHHHHHHH---------HH-----Hh-------------hccHHHHHHHHHHHHHH
Confidence 9999998 799999999999999999999999 33 32 12334667788888899
Q ss_pred HHHHhcCcChhHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCCCCcccccchHHHHHHHHhhhcc-------ccc
Q 000301 1289 AETLALSRDIRVREFVKILYTILLKWYPDESYRGRMLKRLVDRATSTTESSRGVDLDLEILVILVCEEQE-------IIR 1361 (1701)
Q Consensus 1289 a~~l~~s~~~~v~~f~~~~y~~~f~~~~~~~~~~~~~~~lv~~~~s~~~~~~ev~~~l~vL~~l~~~~~~-------~VK 1361 (1701)
|+.+.+|.|..|..||+|||++.||+| +.||++++.+++|+|.|=+ |.++++.+||+|.+++.-+-. -|+
T Consensus 423 ~~~~~~~~~~~~~s~~~~~~~~~~k~~-~~~~~~~~~ga~~~h~cI~--~~~~~~~~ld~L~~~~~DnL~~~~~~~~Ev~ 499 (1335)
T KOG4712|consen 423 AQSLLHSLDQSIISFGSLLYKYAFKFF-DTYCQQEVVGALVTHICIG--NEAEVDTALDVLLELVVDNLSAMMMNAVEVK 499 (1335)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHH-HhhchHHhhhhhhhheeec--chhhhhHHHHHHHHHHHhhHHHHhhhheecc
Confidence 999999999999999999999999999 9999999999999999997 899999999999999887665 688
Q ss_pred hhHHHHHH
Q 000301 1362 PVLSMLRE 1369 (1701)
Q Consensus 1362 PlLq~lRq 1369 (1701)
|+|++..+
T Consensus 500 ~~l~~~~~ 507 (1335)
T KOG4712|consen 500 GILDYLDN 507 (1335)
T ss_pred CchhhccC
Confidence 99877654
No 3
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.88 E-value=4.5e-22 Score=208.96 Aligned_cols=131 Identities=24% Similarity=0.407 Sum_probs=112.7
Q ss_pred ceEEEEEEeccccCCCceeecCcEEEcCeeEEEEEEECCCCC--CCCCcEEEEEEEeCCCCCCCCCceEEEEEEEEEEec
Q 000301 92 SAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQ--ALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNL 169 (1701)
Q Consensus 92 ~~~~tw~I~nfS~lk~~~~~Sp~F~vGG~~WrL~vyP~G~~~--~~~~~LSvYL~~~~~~~~~~~~W~v~a~f~l~Lvn~ 169 (1701)
.++|+|+|+|||.+ ++.++|+.|.+||++|+|.+||+|+.. +..+||||||+|.+.. ....|++.|+|+|+|+|+
T Consensus 2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~--~~~~w~i~a~~~~~l~~~ 78 (137)
T cd03772 2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES--DSTSWSCHAQAVLRIINY 78 (137)
T ss_pred CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC--CCCCCeEEEEEEEEEEcC
Confidence 46899999999999 578999999999999999999999653 2358999999997643 334899999999999999
Q ss_pred CCCcceeeccceeecCCCCCCCccCCCccccccccCCCCceecCCEEEEEEEEEEec
Q 000301 170 SDESKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNDAVLITADILILN 226 (1701)
Q Consensus 170 ~d~~~si~~~~~h~Fs~~~~~wG~~~FI~~~~L~dp~~GfL~d~DsLtIea~V~Vlk 226 (1701)
+++..++.+...|.|+.....|||++||+|++|.++.+|||+| |+|+|+|+|+|-.
T Consensus 79 ~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~-D~l~Ie~~V~~~~ 134 (137)
T cd03772 79 KDDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIED-DTITLEVYVQADA 134 (137)
T ss_pred CCCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEEC-CEEEEEEEEEeeC
Confidence 8655555555667897777899999999999998888999999 9999999998843
No 4
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.88 E-value=4.4e-22 Score=209.03 Aligned_cols=130 Identities=25% Similarity=0.486 Sum_probs=110.1
Q ss_pred CcEEEEEEcccccchhhhhhcccCCceecCCcEEEcCceEEEEEEecCCCC---CCCcEEEEEEEecCCCCCCCCeEEEE
Q 000301 425 MGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQ---PPCHLSVFLEVMDSRNTSSDWSCFVS 501 (1701)
Q Consensus 425 ~~~~twkI~nFS~lk~~~k~~k~~G~~i~S~~F~vGG~~WrI~vYP~G~~~---~~~~LSlYL~l~~~~~~~~~W~v~a~ 501 (1701)
.++|+|+|+|||.+. +.++|+.|.+|||+|+|.+||+|+.. ..+||||||+|.+.. ....|++.|+
T Consensus 2 ~~~~~~~I~~~S~l~----------e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~ 70 (137)
T cd03772 2 EATFSFTVERFSRLS----------ESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQ 70 (137)
T ss_pred CcEEEEEECCcccCC----------CcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEE
Confidence 478999999999984 35899999999999999999999653 248999999997643 3348999999
Q ss_pred EEEEEEeCCCCCeeEEeccccccccCCcCccccccccccccccCCCCCccCCEEEEEEEEEEEe
Q 000301 502 HRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILK 565 (1701)
Q Consensus 502 F~L~Llnq~~~~~sv~k~~~~~F~~~~~~wG~~~FI~~s~L~d~~sGYLvnDsl~Ie~~V~Vlk 565 (1701)
|+|+|+|+.+...+..+...+.|......|||.+||+|++|.++++|||+||+|+|+|+|+|-.
T Consensus 71 ~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 71 AVLRIINYKDDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred EEEEEEcCCCCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 9999999986444555555578876667999999999999987789999999999999998754
No 5
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.87 E-value=9.5e-22 Score=205.90 Aligned_cols=124 Identities=28% Similarity=0.583 Sum_probs=107.2
Q ss_pred EEEEEEcccccchhhhhhcccCCceecCCcEEEcCceEEEEEEecCCCCCCCcEEEEEEEecCCC----CCCCCeEEEEE
Q 000301 427 KFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRN----TSSDWSCFVSH 502 (1701)
Q Consensus 427 ~~twkI~nFS~lk~~~k~~k~~G~~i~S~~F~vGG~~WrI~vYP~G~~~~~~~LSlYL~l~~~~~----~~~~W~v~a~F 502 (1701)
+|+|+|+|||.+. +.+.|++|.+|||+|+|.+||+|+.. .+||||||.+.+... .+.+|.++|.|
T Consensus 2 ~f~w~I~~fS~~~----------~~~~S~~F~vGG~~W~l~~yP~G~~~-~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f 70 (134)
T cd03775 2 SFTWRIKNWSELE----------KKVHSPKFKCGGFEWRILLFPQGNSQ-TGGVSIYLEPHPEEEEKAPLDEDWSVCAQF 70 (134)
T ss_pred cEEEEECCcccCC----------cceeCCCEEECCeeEEEEEeCCCCCC-CCeEEEEEEecCcccccccCCCCCeEEEEE
Confidence 6999999999963 36899999999999999999999865 789999999976443 25689999999
Q ss_pred EEEEEeCCCCCeeEEeccccccccCCcCccccccccccccccC----CCCCccCCEEEEEEEE
Q 000301 503 RLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQ----DSGFLVQDTVVFSAEV 561 (1701)
Q Consensus 503 ~L~Llnq~~~~~sv~k~~~~~F~~~~~~wG~~~FI~~s~L~d~----~sGYLvnDsl~Ie~~V 561 (1701)
+|+|+||.++..+..+...+.|+....+|||.+||++++|+++ ++|||+||+|+|+|.|
T Consensus 71 ~~~l~n~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~ 133 (134)
T cd03775 71 ALVISNPGDPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYV 133 (134)
T ss_pred EEEEEcCCCCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEE
Confidence 9999999876655555667899877789999999999999854 5899999999999987
No 6
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.86 E-value=2.2e-21 Score=203.17 Aligned_cols=126 Identities=27% Similarity=0.524 Sum_probs=109.8
Q ss_pred EEEEEEeccccCCCceeecCcEEEcCeeEEEEEEECCCCCCCCCcEEEEEEEeCCCCC---CCCCceEEEEEEEEEEecC
Q 000301 94 VCRWTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGT---SSSKWDCFASYRLAIVNLS 170 (1701)
Q Consensus 94 ~~tw~I~nfS~lk~~~~~Sp~F~vGG~~WrL~vyP~G~~~~~~~~LSvYL~~~~~~~~---~~~~W~v~a~f~l~Lvn~~ 170 (1701)
+|+|+|.|||.+ ++.++|++|.+|||+|+|++||+|+.. .+|+||||++.+.... .+.+|.+.|+|+|.|+|+.
T Consensus 2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~ 78 (134)
T cd03775 2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG 78 (134)
T ss_pred cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence 599999999997 489999999999999999999999865 6899999999765411 2568999999999999998
Q ss_pred CCcceeeccceeecCCCCCCCccCCCccccccccC----CCCceecCCEEEEEEEEE
Q 000301 171 DESKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDS----KLGYLFNNDAVLITADIL 223 (1701)
Q Consensus 171 d~~~si~~~~~h~Fs~~~~~wG~~~FI~~~~L~dp----~~GfL~d~DsLtIea~V~ 223 (1701)
++..++.....|.|+....+|||.+||++++|++| ++|||+| |+|+|++.|+
T Consensus 79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~n-D~l~I~~~~~ 134 (134)
T cd03775 79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLEN-GELNITVYVR 134 (134)
T ss_pred CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeEC-CEEEEEEEEC
Confidence 87766666678999887789999999999999954 6799999 9999999874
No 7
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.85 E-value=2.2e-21 Score=206.01 Aligned_cols=135 Identities=19% Similarity=0.272 Sum_probs=111.0
Q ss_pred cEEEEEEccccccccc-cccC--cccCCcc--ccCCceEEEEEEecCCC--CccceEEEEEeccCCccccCCCcEEEEEE
Q 000301 259 GKFTWKVHNFSLFKEM-IKTQ--KIMSPVF--PAGECNLRISVYQSSVN--GQEYLSMCLESKDMEKTVVSDRSCWCLFR 331 (1701)
Q Consensus 259 g~f~wkI~nFS~lk~~-~k~e--~i~S~~F--~vgG~~WrL~vYPnG~~--~~~yLSlyL~L~~~e~d~~~~w~v~a~ft 331 (1701)
|+|+|+|.|||.+++. ..+. .++|++| .++||+|+|.+||||.+ .++||||||+++++++|+.++|||.++|+
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 6899999999998754 3344 6999999 89999999999999976 36799999999999999999999999999
Q ss_pred EEEEeCCCCCCce---eec--ccccccCCCCCCCCCccCccccccccccccCCCCcccCCcEEEEEEE
Q 000301 332 MSVLNQSPGSNHM---HRD--SYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSF 394 (1701)
Q Consensus 332 L~LLnQ~~g~~~~---~r~--~~~~F~~~~~~~~~~~~G~~kFI~~sdL~d~~~GYLvdDsliIe~~V 394 (1701)
|.||||.....++ ... ....|+++. ..+|.+||+.+||++++|+.++.+||+||+++|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~-~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPD-GEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCC-CCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 9999996333331 111 235687764 3346789999999999998534599999999999976
No 8
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.85 E-value=2.6e-21 Score=212.33 Aligned_cols=135 Identities=15% Similarity=0.225 Sum_probs=111.8
Q ss_pred CcEEEEEEccccccccc-cccC--cccCCccccC--CceEEEEEEecCCC--CccceEEEEEeccCCccccCCCcEEEEE
Q 000301 258 SGKFTWKVHNFSLFKEM-IKTQ--KIMSPVFPAG--ECNLRISVYQSSVN--GQEYLSMCLESKDMEKTVVSDRSCWCLF 330 (1701)
Q Consensus 258 ~g~f~wkI~nFS~lk~~-~k~e--~i~S~~F~vg--G~~WrL~vYPnG~~--~~~yLSlyL~L~~~e~d~~~~w~v~a~f 330 (1701)
+|+|+|+|.|||..++. ..+. .++|++|++| ||+|+|.+||||.+ .++|||+||+++++++|+.++|||.++|
T Consensus 38 ~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~~~ 117 (186)
T cd03777 38 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKV 117 (186)
T ss_pred ceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeEEE
Confidence 59999999999998643 3333 6999999999 99999999999975 3679999999999999999999999999
Q ss_pred EEEEEeCCCCCCceee-----cccccccCCCCCCCCCccCccccccccccccCCCCcccCCcEEEEEEEE
Q 000301 331 RMSVLNQSPGSNHMHR-----DSYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFH 395 (1701)
Q Consensus 331 tL~LLnQ~~g~~~~~r-----~~~~~F~~~~~~~~~~~~G~~kFI~~sdL~d~~~GYLvdDsliIe~~V~ 395 (1701)
+|.|+||..+..++.. .....|+++. ...|.+||+++||++++|+ +++||+||+++|+|.|.
T Consensus 118 tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~-~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 118 TLMLMDQGSSRRHLGDAFKPDPNSSSFKKPT-GEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD 184 (186)
T ss_pred EEEEEcCCCccccccceeccCCccccccCCc-cCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence 9999999632222211 1235687664 2236789999999999998 78999999999999875
No 9
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.84 E-value=5.1e-21 Score=204.59 Aligned_cols=135 Identities=15% Similarity=0.258 Sum_probs=112.8
Q ss_pred cCcEEEEEEcccccccccc---ccCcccCCccccC--CceEEEEEEecCCCC--ccceEEEEEeccCCccccCCCcEEEE
Q 000301 257 LSGKFTWKVHNFSLFKEMI---KTQKIMSPVFPAG--ECNLRISVYQSSVNG--QEYLSMCLESKDMEKTVVSDRSCWCL 329 (1701)
Q Consensus 257 ~~g~f~wkI~nFS~lk~~~---k~e~i~S~~F~vg--G~~WrL~vYPnG~~~--~~yLSlyL~L~~~e~d~~~~w~v~a~ 329 (1701)
.+|+|+|+|.|||.+.+.. ....++||+|+.+ ||+|++.+||||++. +.|||+|++++++++|..++|||+.+
T Consensus 17 ~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~~ 96 (164)
T cd03778 17 YDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQK 96 (164)
T ss_pred cCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceeeE
Confidence 3699999999999876543 2347999999765 899999999999863 57999999999999999999999999
Q ss_pred EEEEEEeCCCCCCceeec-----ccccccCCCCCCCCCccCccccccccccccCCCCcccCCcEEEEEEE
Q 000301 330 FRMSVLNQSPGSNHMHRD-----SYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSF 394 (1701)
Q Consensus 330 ftL~LLnQ~~g~~~~~r~-----~~~~F~~~~~~~~~~~~G~~kFI~~sdL~d~~~GYLvdDsliIe~~V 394 (1701)
++|.|+||. +..|+... ....|++|. ..+|.+|||+.||++++|.. ..|||+||+|.|+|.|
T Consensus 97 itl~llDQ~-~r~hi~~~~~pd~~~~~f~RP~-~~~n~~~G~~~Fv~l~~l~~-~~~Yv~dDtlfIk~~V 163 (164)
T cd03778 97 VTLMLLDQN-NREHVIDAFRPDVTSSSFQRPV-NDMNIASGCPLFCPVSKXEA-KNSYVRDDAIFIKAIV 163 (164)
T ss_pred EEEEEECCC-CCCcceeEEEcCcchHhcCCCC-cccccCcCcceEEEhhHccc-cCCcccCCeEEEEEEE
Confidence 999999996 55565432 223588775 45678899999999999985 3799999999999976
No 10
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.84 E-value=5.6e-21 Score=202.14 Aligned_cols=134 Identities=16% Similarity=0.238 Sum_probs=109.0
Q ss_pred cEEEEEEccccccccccc---cCcccCCccccC--CceEEEEEEecCCC--CccceEEEEEeccCCccccCCCcEEEEEE
Q 000301 259 GKFTWKVHNFSLFKEMIK---TQKIMSPVFPAG--ECNLRISVYQSSVN--GQEYLSMCLESKDMEKTVVSDRSCWCLFR 331 (1701)
Q Consensus 259 g~f~wkI~nFS~lk~~~k---~e~i~S~~F~vg--G~~WrL~vYPnG~~--~~~yLSlyL~L~~~e~d~~~~w~v~a~ft 331 (1701)
|+|+|+|.||+...+.++ ...++||+|+++ ||+|+|.+||||.+ .++|||+||+++++++|..++|+|.++|+
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 689999999997544332 347999999887 99999999999976 36899999999999999999999999999
Q ss_pred EEEEeCCCCCCce---eecc--cccccCCCCCCCCCccCccccccccccccCCCCcccCCcEEEEEEE
Q 000301 332 MSVLNQSPGSNHM---HRDS--YGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSF 394 (1701)
Q Consensus 332 L~LLnQ~~g~~~~---~r~~--~~~F~~~~~~~~~~~~G~~kFI~~sdL~d~~~GYLvdDsliIe~~V 394 (1701)
|+||||. +..+. .... ...|++|. ...|.+||+.+||++++|+....+||+||+++|+|+|
T Consensus 81 fsLlDq~-~~~~~~~~~~~~~~~~~F~rP~-~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 81 FMLLDQN-NREHVIDAFRPDLSSASFQRPV-SDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEECCC-CCCCCcEeecCCcccccccCcc-cCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 9999995 43332 2211 35688765 2345689999999999998322499999999999987
No 11
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.84 E-value=5.6e-21 Score=203.16 Aligned_cols=135 Identities=21% Similarity=0.361 Sum_probs=108.7
Q ss_pred cEEEEEEcccccccc-ccccCc--ccCCcccc--CCceEEEEEEecCCC--CccceEEEEEeccCCccccCCCcEEEEEE
Q 000301 259 GKFTWKVHNFSLFKE-MIKTQK--IMSPVFPA--GECNLRISVYQSSVN--GQEYLSMCLESKDMEKTVVSDRSCWCLFR 331 (1701)
Q Consensus 259 g~f~wkI~nFS~lk~-~~k~e~--i~S~~F~v--gG~~WrL~vYPnG~~--~~~yLSlyL~L~~~e~d~~~~w~v~a~ft 331 (1701)
|+|+|+|.|||.+++ ++.++. |+|+.|++ |||+|+|.+||||.. ..+|||+||+|++++++..++|+++++|+
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 689999999997654 445553 88999985 799999999999975 36899999999999888888999999999
Q ss_pred EEEEeCCCCCCceee-----cccccccCCCCCCCCCccCccccccccccccCCCCcccCCcEEEEEEEE
Q 000301 332 MSVLNQSPGSNHMHR-----DSYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFH 395 (1701)
Q Consensus 332 L~LLnQ~~g~~~~~r-----~~~~~F~~~~~~~~~~~~G~~kFI~~sdL~d~~~GYLvdDsliIe~~V~ 395 (1701)
|.||||.....++.. .....|+++....++.+|||.+||++++|+ ..+||+||+|+|+|+|+
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLL--QRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhh--hCCCccCCEEEEEEEEC
Confidence 999999633333221 123467765432344689999999999998 56999999999999973
No 12
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.84 E-value=1.7e-20 Score=197.50 Aligned_cols=130 Identities=27% Similarity=0.489 Sum_probs=107.9
Q ss_pred CcEEEEEEcccccchhhhhhcccCCceecCCcEEEcCc---eEEEEEEecCCCC-CCCcEEEEEEEecCCCCCCCCeEEE
Q 000301 425 MGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNR---DCRLIVYPRGQSQ-PPCHLSVFLEVMDSRNTSSDWSCFV 500 (1701)
Q Consensus 425 ~~~~twkI~nFS~lk~~~k~~k~~G~~i~S~~F~vGG~---~WrI~vYP~G~~~-~~~~LSlYL~l~~~~~~~~~W~v~a 500 (1701)
..+|+|+|+|||.+++ ..|+++.|++|.+||| +|+|.+||+|+.. ..+|+||||++.+. ..|.++|
T Consensus 4 ~~~~~w~I~~fS~~~~------~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~----~~~~v~a 73 (139)
T cd03774 4 KFCYMWTISNFSFCRE------EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRA 73 (139)
T ss_pred EEEEEEEECCchhhhh------cCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccC----CCCcEEE
Confidence 5689999999999864 2478999999999985 9999999999754 36899999999753 2467999
Q ss_pred EEEEEEEeCCCCCeeE-EeccccccccCCcCccccccccccccccCCCCCccCCEEEEEEEEEEEe
Q 000301 501 SHRLSVVNQKMEEKSV-TKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILK 565 (1701)
Q Consensus 501 ~F~L~Llnq~~~~~sv-~k~~~~~F~~~~~~wG~~~FI~~s~L~d~~sGYLvnDsl~Ie~~V~Vlk 565 (1701)
+|+|+|+||.++.... .....+.|.. ..+|||.+||++++|.++.+|||+||+|+|+|+|+|++
T Consensus 74 ~f~~~l~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 74 KFKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EEEEEEEecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 9999999999765322 2223466753 57899999999999987778999999999999999985
No 13
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.84 E-value=8.8e-21 Score=201.67 Aligned_cols=134 Identities=17% Similarity=0.326 Sum_probs=108.7
Q ss_pred cEEEEEEccccccccc---cccCcccCCccccC--CceEEEEEEecCCC--CccceEEEEEeccCCccccCCCcEEEEEE
Q 000301 259 GKFTWKVHNFSLFKEM---IKTQKIMSPVFPAG--ECNLRISVYQSSVN--GQEYLSMCLESKDMEKTVVSDRSCWCLFR 331 (1701)
Q Consensus 259 g~f~wkI~nFS~lk~~---~k~e~i~S~~F~vg--G~~WrL~vYPnG~~--~~~yLSlyL~L~~~e~d~~~~w~v~a~ft 331 (1701)
|+|+|+|.|||.+++. +.++.++|+.|++| ||+|+|.+||||.. ..+||||||++++++++..++|+++++|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 6899999999998752 34568999999999 99999999999974 35799999999999888778999999999
Q ss_pred EEEEeCCCC--CCceeec-----ccccccCCCCCCCCCccCccccccccccccCCCCcccCCcEEEEEEE
Q 000301 332 MSVLNQSPG--SNHMHRD-----SYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSF 394 (1701)
Q Consensus 332 L~LLnQ~~g--~~~~~r~-----~~~~F~~~~~~~~~~~~G~~kFI~~sdL~d~~~GYLvdDsliIe~~V 394 (1701)
|.|+||..+ ..+.... ....|+.+..+..+.+|||.+||++++|+ +.|||+||+|+|+|+|
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~v 148 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLE--SRGYVKDDTLFIKVEV 148 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhc--cCCCEeCCEEEEEEEE
Confidence 999999743 3333221 23456532222345789999999999998 4699999999999987
No 14
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.83 E-value=2.4e-20 Score=200.86 Aligned_cols=135 Identities=21% Similarity=0.353 Sum_probs=110.5
Q ss_pred CcEEEEEEccccccc-cccccCcccCCcc-ccCCceEEEEEEecCCC-CccceEEEEEeccCCccccCCCcE-EEEEEEE
Q 000301 258 SGKFTWKVHNFSLFK-EMIKTQKIMSPVF-PAGECNLRISVYQSSVN-GQEYLSMCLESKDMEKTVVSDRSC-WCLFRMS 333 (1701)
Q Consensus 258 ~g~f~wkI~nFS~lk-~~~k~e~i~S~~F-~vgG~~WrL~vYPnG~~-~~~yLSlyL~L~~~e~d~~~~w~v-~a~ftL~ 333 (1701)
|++|+|+|.|||.++ +.+.+..++|++| .+|||+|+|.+||||.+ ..+||||||++++++++..++||+ +++|+|+
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~ 80 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTESYPGYTGLYFHLCSGENDDVLEWPCPNRQATMT 80 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCCCCCcceEEEEEecCCccccccCcceeEEEEEE
Confidence 468999999999986 5566778999998 89999999999999975 467999999999999999999995 8999999
Q ss_pred EEeCCCC---CCceeec------------ccccccCCCC-----C-------CCCCccCccccccccccccCCCCcccCC
Q 000301 334 VLNQSPG---SNHMHRD------------SYGRFAADNK-----S-------GDNTSLGWNDYMKMADFVGHDSGFLVDD 386 (1701)
Q Consensus 334 LLnQ~~g---~~~~~r~------------~~~~F~~~~~-----~-------~~~~~~G~~kFI~~sdL~d~~~GYLvdD 386 (1701)
||||.++ ..|.++. ....|++|.+ . .++.+|||.+||++++|. ..+||+||
T Consensus 81 LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~--~r~ylk~d 158 (167)
T cd03771 81 LLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLR--RRDFLKGD 158 (167)
T ss_pred EECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhc--cCCCCcCC
Confidence 9999631 1233221 1123777632 1 156799999999999999 67899999
Q ss_pred cEEEEEEE
Q 000301 387 TAVFSTSF 394 (1701)
Q Consensus 387 sliIe~~V 394 (1701)
+|+|+++|
T Consensus 159 tl~i~~~~ 166 (167)
T cd03771 159 DLIILLDF 166 (167)
T ss_pred EEEEEEEe
Confidence 99999986
No 15
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.82 E-value=2.5e-20 Score=199.72 Aligned_cols=134 Identities=17% Similarity=0.318 Sum_probs=108.9
Q ss_pred cEEEEEEccccccccc--c-ccCcccCCccccC--CceEEEEEEecCCC--CccceEEEEEeccCCccccCCCcEEEEEE
Q 000301 259 GKFTWKVHNFSLFKEM--I-KTQKIMSPVFPAG--ECNLRISVYQSSVN--GQEYLSMCLESKDMEKTVVSDRSCWCLFR 331 (1701)
Q Consensus 259 g~f~wkI~nFS~lk~~--~-k~e~i~S~~F~vg--G~~WrL~vYPnG~~--~~~yLSlyL~L~~~e~d~~~~w~v~a~ft 331 (1701)
|+|+|+|.|||.++.+ . .+..++|+.|++| ||.|+|.+||||.. ..+|||+||++++++++..++|+++++|+
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 6899999999998764 2 3578999999999 99999999999965 36899999999999888778999999999
Q ss_pred EEEEeCCCC--C--Cceee-----cccccccCCCC---CCCCCccCccccccccccccCCCCcccCCcEEEEEEE
Q 000301 332 MSVLNQSPG--S--NHMHR-----DSYGRFAADNK---SGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSF 394 (1701)
Q Consensus 332 L~LLnQ~~g--~--~~~~r-----~~~~~F~~~~~---~~~~~~~G~~kFI~~sdL~d~~~GYLvdDsliIe~~V 394 (1701)
|+||||..+ . .++.. .....|++|.. ...+.+|||.+||++++|+ ++|||+||+++|+|+|
T Consensus 81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~Irc~v 153 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLK--KRNYIKDDAIFLRASV 153 (154)
T ss_pred EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHh--hCCcccCCEEEEEEEe
Confidence 999999633 1 12211 11345766531 1234689999999999998 6799999999999987
No 16
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.81 E-value=1.2e-19 Score=189.06 Aligned_cols=125 Identities=26% Similarity=0.448 Sum_probs=105.0
Q ss_pred CCcEEEEEEcccccchhhhhhcccCCceecCCcEEEcCceEEEEEEecCCCC-CCCcEEEEEEEecCCCCCCCCeEEEEE
Q 000301 424 HMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQ-PPCHLSVFLEVMDSRNTSSDWSCFVSH 502 (1701)
Q Consensus 424 ~~~~~twkI~nFS~lk~~~k~~k~~G~~i~S~~F~vGG~~WrI~vYP~G~~~-~~~~LSlYL~l~~~~~~~~~W~v~a~F 502 (1701)
...+++|+|.|||.+++ .|++++|++|.+|||+|+|.+||+|+.. ..+|||+||++.+. ..|.+.++|
T Consensus 3 ~~~~~~~~I~~fS~~~~-------~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~----~~~~~~~~~ 71 (132)
T cd03773 3 PYDSATFTLENFSTLRQ-------SADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG----LGEASKYEY 71 (132)
T ss_pred CCcccEEEECChhhhhc-------CCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC----CCCceeEEE
Confidence 45689999999999863 2678999999999999999999999865 36899999998763 246789999
Q ss_pred EEEEEeCCCCCeeEEeccccccccCCcCccccccccccccccCCCCCccC--CEEEEEEEEE
Q 000301 503 RLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQ--DTVVFSAEVL 562 (1701)
Q Consensus 503 ~L~Llnq~~~~~sv~k~~~~~F~~~~~~wG~~~FI~~s~L~d~~sGYLvn--Dsl~Ie~~V~ 562 (1701)
+|+|+||.++..++.....+.|.. ..+|||.+||++++|. ++|||+| |+|+|+|.|.
T Consensus 72 ~l~llnq~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~--~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 72 RVEMVHQANPTKNIKREFASDFEV-GECWGYNRFFRLDLLI--NEGYLLPENDTLILRFSVR 130 (132)
T ss_pred EEEEEcCCCCccceEEeccccccC-CCCcCHHHhccHHHHh--hCCCcCCCCCEEEEEEEEe
Confidence 999999965555565666778864 5679999999999996 4799999 9999999984
No 17
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.81 E-value=1.2e-19 Score=193.10 Aligned_cols=132 Identities=23% Similarity=0.430 Sum_probs=105.1
Q ss_pred cEEEEEEcccccchhhhhhcccCCceecCCcEEEc--CceEEEEEEecCCCC-CCCcEEEEEEEecCCCC-CCCCeEEEE
Q 000301 426 GKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIG--NRDCRLIVYPRGQSQ-PPCHLSVFLEVMDSRNT-SSDWSCFVS 501 (1701)
Q Consensus 426 ~~~twkI~nFS~lk~~~k~~k~~G~~i~S~~F~vG--G~~WrI~vYP~G~~~-~~~~LSlYL~l~~~~~~-~~~W~v~a~ 501 (1701)
++|+|+|+|||.+++.. ..+.|.+++|+.|.+| ||+|+|++||+|... ..+||||||++.+..+. ...|.++++
T Consensus 1 g~~~w~I~~fs~~~~~~--~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~ 78 (149)
T cd00270 1 GVLIWKIKDYSRKLQEA--VAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGK 78 (149)
T ss_pred CEEEEEECCHHHHHHHH--hcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccce
Confidence 58999999999987621 1234679999999999 999999999999865 35799999999875432 467999999
Q ss_pred EEEEEEeCCCC--CeeEEec-----cccccc-----cCCcCccccccccccccccCCCCCccCCEEEEEEEE
Q 000301 502 HRLSVVNQKME--EKSVTKE-----SQNRYS-----KAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEV 561 (1701)
Q Consensus 502 F~L~Llnq~~~--~~sv~k~-----~~~~F~-----~~~~~wG~~~FI~~s~L~d~~sGYLvnDsl~Ie~~V 561 (1701)
|+|+|+||.++ .++.... ..+.|. ....+|||.+||++++|++ +|||+||+|+|+|+|
T Consensus 79 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v 148 (149)
T cd00270 79 ITLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEV 148 (149)
T ss_pred EEEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEE
Confidence 99999999874 2332221 123564 1357899999999999974 699999999999998
No 18
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.80 E-value=3.2e-19 Score=187.84 Aligned_cols=129 Identities=24% Similarity=0.414 Sum_probs=107.2
Q ss_pred ceEEEEEEeccccCC---CceeecCcEEEcCe---eEEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCceEEEEEEEE
Q 000301 92 SAVCRWTVHNFPRIR---ARALWSKYFEVGGY---DCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLA 165 (1701)
Q Consensus 92 ~~~~tw~I~nfS~lk---~~~~~Sp~F~vGG~---~WrL~vyP~G~~~~~~~~LSvYL~~~~~~~~~~~~W~v~a~f~l~ 165 (1701)
.-+|+|+|+|||.++ ++.+.|++|.+||+ +|+|++||+|+..+..+|+|+||++.... .|.+.|+|+|.
T Consensus 4 ~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~-----~~~v~a~f~~~ 78 (139)
T cd03774 4 KFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP-----KSEVRAKFKFS 78 (139)
T ss_pred EEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC-----CCcEEEEEEEE
Confidence 357999999999874 46899999999995 99999999998655578999999986532 36799999999
Q ss_pred EEecCCCcce-eeccceeecCCCCCCCccCCCccccccccCCCCceecCCEEEEEEEEEEecC
Q 000301 166 IVNLSDESKT-IHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNDAVLITADILILNE 227 (1701)
Q Consensus 166 Lvn~~d~~~s-i~~~~~h~Fs~~~~~wG~~~FI~~~~L~dp~~GfL~d~DsLtIea~V~Vlke 227 (1701)
|+|++++... ......+.|.. ..+|||.+||++++|.++.+|||.| |+++|+|+|+|+++
T Consensus 79 l~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~d-D~l~I~c~I~V~~~ 139 (139)
T cd03774 79 ILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPD-DKLTLFCEVSVVQD 139 (139)
T ss_pred EEecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccC-CEEEEEEEEEEEcC
Confidence 9999875432 22234577865 5799999999999998777899999 99999999999863
No 19
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.80 E-value=1.5e-19 Score=192.28 Aligned_cols=131 Identities=23% Similarity=0.437 Sum_probs=103.7
Q ss_pred cEEEEEEcccccchhhhhhcccCCce--ecCCcEEE--cCceEEEEEEecCCCCC-CCcEEEEEEEecCCC-CCCCCeEE
Q 000301 426 GKFTWRIENFTRLKDLLKKRKITGLC--IKSRRFQI--GNRDCRLIVYPRGQSQP-PCHLSVFLEVMDSRN-TSSDWSCF 499 (1701)
Q Consensus 426 ~~~twkI~nFS~lk~~~k~~k~~G~~--i~S~~F~v--GG~~WrI~vYP~G~~~~-~~~LSlYL~l~~~~~-~~~~W~v~ 499 (1701)
|+|+|+|.|||.+++.+ +.|.. ++|++|.+ |||+|+|++||+|...+ .+|||+||++++... ....|+++
T Consensus 1 g~h~~~I~~yS~~~~~~----~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~ 76 (147)
T cd03776 1 GIYVWKIKNFSNLRRSM----EAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQ 76 (147)
T ss_pred CEEEEEECCHHHHHHHH----hcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCccc
Confidence 57999999999765421 34664 88999996 79999999999998764 689999999987543 24579999
Q ss_pred EEEEEEEEeCCCCCeeEEe-----cccccccc-----CCcCccccccccccccccCCCCCccCCEEEEEEEEE
Q 000301 500 VSHRLSVVNQKMEEKSVTK-----ESQNRYSK-----AAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVL 562 (1701)
Q Consensus 500 a~F~L~Llnq~~~~~sv~k-----~~~~~F~~-----~~~~wG~~~FI~~s~L~d~~sGYLvnDsl~Ie~~V~ 562 (1701)
++|+|+|+||.++..++.. ...+.|.. .+.+|||.+||++++|+ .++||+||+|+|+|+|.
T Consensus 77 a~~~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 77 GTITLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLL--QRGFVKNDTLLIKIEVN 147 (147)
T ss_pred ceeEEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhh--hCCCccCCEEEEEEEEC
Confidence 9999999999875443221 12345753 34679999999999996 47899999999999983
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.79 E-value=9.5e-17 Score=218.03 Aligned_cols=259 Identities=23% Similarity=0.338 Sum_probs=238.2
Q ss_pred cccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1358 EIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDR 1437 (1701)
Q Consensus 1358 ~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~elkaEleee~~r 1437 (1701)
.+|||||++++++.++.+.+.+ ...+++...+.+..+++++....++..++..|+.++ ++..+..+++++++++
T Consensus 825 ~kvkPLL~~~~~ee~~~~~~~e--~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l----~~e~~~~~~aee~~~~ 898 (1930)
T KOG0161|consen 825 TKVKPLLKVTKTEEEMRAKEEE--IQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQL----QAEKENLAEAEELLER 898 (1930)
T ss_pred HHHHHHHHhhhhHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4999999999999999998888 888888888889999999999999999999999998 4555677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1438 FAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAE 1517 (1701)
Q Consensus 1438 L~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE 1517 (1701)
+..++.++|..+++++.+++ +.+++...++.+++++++++.+++.++.+++...+ +++.|++.++.++++++
T Consensus 899 ~~~~k~~le~~l~~~~~~~e----~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~----k~~~Ek~~~e~~~~~l~ 970 (1930)
T KOG0161|consen 899 LRAEKQELEKELKELKERLE----EEEEKNAELERKKRKLEQEVQELKEQLEELELTLQ----KLELEKNAAENKLKNLE 970 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 88899999999999999999999999999887655 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Q 000301 1518 AARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAY--------------IDGMESKL 1583 (1701)
Q Consensus 1518 ~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~--------------l~~lE~eL 1583 (1701)
.++..+++.+.++.++++.+|++++++..+++..++++.++.+.+.+++.++++++.. ++++++++
T Consensus 971 ~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el 1050 (1930)
T KOG0161|consen 971 EEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL 1050 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888766 56888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhhhHHHhhHHHHHHHHHHHHH----------HhhhhhhhhhhcC
Q 000301 1584 QACQQYIHTLEAQLQEEMSRHAPLYGAGLEALSMKELETLARIHEE----------GLRQIHTLQQCKG 1642 (1701)
Q Consensus 1584 ~e~q~~I~eLe~~l~eE~e~h~~~~~~~Le~~~~~e~e~L~~~~~~----------~~k~ir~lq~~~~ 1642 (1701)
...++.+.++..++.+ |+.++++++.+|+++..+ ++|+|++||+|+.
T Consensus 1051 ~~~~e~~~~~~~~~~e------------l~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~ 1107 (1930)
T KOG0161|consen 1051 KDLQESIEELKKQKEE------------LDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIK 1107 (1930)
T ss_pred HHhhhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888866 899999888888888888 8999999999874
No 21
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.78 E-value=6.5e-19 Score=188.89 Aligned_cols=132 Identities=18% Similarity=0.396 Sum_probs=105.1
Q ss_pred cEEEEEEcccccchhhhhhcccCCceecCCcEEEc--CceEEEEEEecCCCCC-CCcEEEEEEEecCCCCC-CCCeEEEE
Q 000301 426 GKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIG--NRDCRLIVYPRGQSQP-PCHLSVFLEVMDSRNTS-SDWSCFVS 501 (1701)
Q Consensus 426 ~~~twkI~nFS~lk~~~k~~k~~G~~i~S~~F~vG--G~~WrI~vYP~G~~~~-~~~LSlYL~l~~~~~~~-~~W~v~a~ 501 (1701)
|+|.|+|+|||.++++.+ .+.|.++.|+.|.+| ||+|+|++||+|...+ .+|||+||++++.+... ..|.++++
T Consensus 1 g~~~~~I~gys~~~~~~~--~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~ 78 (154)
T cd03781 1 GTLLWKITDYSRKLQEAK--GRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHR 78 (154)
T ss_pred CEEEEEECCHHHHHHHhh--cCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeE
Confidence 579999999999886321 224689999999999 9999999999998764 57999999999854333 48999999
Q ss_pred EEEEEEeCCCC--C--eeEEe-----cccccccc--------CCcCccccccccccccccCCCCCccCCEEEEEEEE
Q 000301 502 HRLSVVNQKME--E--KSVTK-----ESQNRYSK--------AAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEV 561 (1701)
Q Consensus 502 F~L~Llnq~~~--~--~sv~k-----~~~~~F~~--------~~~~wG~~~FI~~s~L~d~~sGYLvnDsl~Ie~~V 561 (1701)
|+|+|+||.+. . .++.. .....|.. .+.+|||..||++++|+ +++||+||+++|+|+|
T Consensus 79 ~~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~Irc~v 153 (154)
T cd03781 79 ITFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLK--KRNYIKDDAIFLRASV 153 (154)
T ss_pred EEEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHh--hCCcccCCEEEEEEEe
Confidence 99999999874 1 12211 11345652 34579999999999996 5899999999999988
No 22
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.78 E-value=7.3e-19 Score=186.79 Aligned_cols=132 Identities=20% Similarity=0.356 Sum_probs=106.0
Q ss_pred cEEEEEEcccccchhhhhhcccCCc--eecCCcE--EEcCceEEEEEEecCCCCC-CCcEEEEEEEecCCCC-CCCCeEE
Q 000301 426 GKFTWRIENFTRLKDLLKKRKITGL--CIKSRRF--QIGNRDCRLIVYPRGQSQP-PCHLSVFLEVMDSRNT-SSDWSCF 499 (1701)
Q Consensus 426 ~~~twkI~nFS~lk~~~k~~k~~G~--~i~S~~F--~vGG~~WrI~vYP~G~~~~-~~~LSlYL~l~~~~~~-~~~W~v~ 499 (1701)
|+|.|+|.|||.+++. ...|. +++|+.| .+|||+|+|++||||...+ .+||||||++++.++. -..|++.
T Consensus 1 g~~vwkI~~ys~~~~~----~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~ 76 (148)
T cd03780 1 GKLIWKVTDYKMKKKE----AVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR 76 (148)
T ss_pred CEEEEEECCHHHHHHh----hcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceE
Confidence 5799999999999753 24567 8999999 8899999999999999764 6799999999975432 2579999
Q ss_pred EEEEEEEEeCCCCCeeE--E-e--ccccccccC----CcCccccccccccccccCCCCCccCCEEEEEEEE
Q 000301 500 VSHRLSVVNQKMEEKSV--T-K--ESQNRYSKA----AKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEV 561 (1701)
Q Consensus 500 a~F~L~Llnq~~~~~sv--~-k--~~~~~F~~~----~~~wG~~~FI~~s~L~d~~sGYLvnDsl~Ie~~V 561 (1701)
++|+|+|+||.+...++ . . ...+.|... +..||+.+||++++|+..+.+||+||+++|+|.|
T Consensus 77 ~~~tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 77 QRVTLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEEEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 99999999998654331 1 1 113568644 4579999999999997433599999999999987
No 23
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.78 E-value=6.1e-19 Score=183.73 Aligned_cols=123 Identities=19% Similarity=0.365 Sum_probs=102.3
Q ss_pred CcEEEEEEccccccccccccCcccCCccccCCceEEEEEEecCCC--CccceEEEEEeccCCccccCCCcEEEEEEEEEE
Q 000301 258 SGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVN--GQEYLSMCLESKDMEKTVVSDRSCWCLFRMSVL 335 (1701)
Q Consensus 258 ~g~f~wkI~nFS~lk~~~k~e~i~S~~F~vgG~~WrL~vYPnG~~--~~~yLSlyL~L~~~e~d~~~~w~v~a~ftL~LL 335 (1701)
+++++|+|.|||.+++ .++.++|+.|.+|||+|+|.+||+|.+ ..+|||+||+++++. .|++.++|+|+|+
T Consensus 4 ~~~~~~~I~~fS~~~~--~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~-----~~~~~~~~~l~ll 76 (132)
T cd03773 4 YDSATFTLENFSTLRQ--SADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGL-----GEASKYEYRVEMV 76 (132)
T ss_pred CcccEEEECChhhhhc--CCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecCC-----CCceeEEEEEEEE
Confidence 5789999999999864 346899999999999999999999975 368999999997642 4778999999999
Q ss_pred eCCCCCCceeecccccccCCCCCCCCCccCccccccccccccCCCCcccC--CcEEEEEEEE
Q 000301 336 NQSPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVD--DTAVFSTSFH 395 (1701)
Q Consensus 336 nQ~~g~~~~~r~~~~~F~~~~~~~~~~~~G~~kFI~~sdL~d~~~GYLvd--DsliIe~~V~ 395 (1701)
||.....+..+...++|... .+|||.+||++++|. ++|||+| |+|+|+|.|.
T Consensus 77 nq~~~~~~~~~~~~~~f~~~------~~wG~~~Fi~~~~L~--~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 77 HQANPTKNIKREFASDFEVG------ECWGYNRFFRLDLLI--NEGYLLPENDTLILRFSVR 130 (132)
T ss_pred cCCCCccceEEeccccccCC------CCcCHHHhccHHHHh--hCCCcCCCCCEEEEEEEEe
Confidence 99534455555555677532 579999999999998 5799999 9999999974
No 24
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.77 E-value=2e-18 Score=189.70 Aligned_cols=134 Identities=21% Similarity=0.336 Sum_probs=106.6
Q ss_pred CCCcEEEEEEcccccchhhhhhcccCCc--eecCCcEEEc--CceEEEEEEecCCCCC-CCcEEEEEEEecCCC-CCCCC
Q 000301 423 GHMGKFTWRIENFTRLKDLLKKRKITGL--CIKSRRFQIG--NRDCRLIVYPRGQSQP-PCHLSVFLEVMDSRN-TSSDW 496 (1701)
Q Consensus 423 ~~~~~~twkI~nFS~lk~~~k~~k~~G~--~i~S~~F~vG--G~~WrI~vYP~G~~~~-~~~LSlYL~l~~~~~-~~~~W 496 (1701)
..+|+|.|+|.|||..++.. ..|. +++|++|++| ||+|+|++||+|+..+ ++|||+||+++++.+ .-..|
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~----~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~W 111 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEA----VMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPW 111 (186)
T ss_pred ccceEEEEEECChhHHHHhh----ccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCC
Confidence 35799999999999987522 3455 8999999999 9999999999998754 679999999997542 23479
Q ss_pred eEEEEEEEEEEeCCCCCeeEEe-----ccccccc-cC---CcCccccccccccccccCCCCCccCCEEEEEEEEE
Q 000301 497 SCFVSHRLSVVNQKMEEKSVTK-----ESQNRYS-KA---AKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVL 562 (1701)
Q Consensus 497 ~v~a~F~L~Llnq~~~~~sv~k-----~~~~~F~-~~---~~~wG~~~FI~~s~L~d~~sGYLvnDsl~Ie~~V~ 562 (1701)
++.++|+|.|+||.+...++.. .....|. .. +..|||++||++++|+ +++||+||+++|+|.|.
T Consensus 112 P~~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 112 PFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD 184 (186)
T ss_pred ceeEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence 9999999999999753222111 1124575 22 4579999999999996 58999999999999885
No 25
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.76 E-value=2.1e-18 Score=183.80 Aligned_cols=135 Identities=21% Similarity=0.346 Sum_probs=109.5
Q ss_pred CcEEEEEEccccccccc-cccCcccCCccccC-CceEEEEEEecCCC---CccceEEEEEeccCCccccCCCcE-EEEEE
Q 000301 258 SGKFTWKVHNFSLFKEM-IKTQKIMSPVFPAG-ECNLRISVYQSSVN---GQEYLSMCLESKDMEKTVVSDRSC-WCLFR 331 (1701)
Q Consensus 258 ~g~f~wkI~nFS~lk~~-~k~e~i~S~~F~vg-G~~WrL~vYPnG~~---~~~yLSlyL~L~~~e~d~~~~w~v-~a~ft 331 (1701)
|+.|+|+|.||+.+.+. .++..++||+|+++ ||++++.+||||.+ .++|+|||++++.|++|..++||| +.+++
T Consensus 1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence 46799999999986543 35678999999885 99999999999875 367999999999999999999995 56999
Q ss_pred EEEEeCCCC---CCceee----c---c------cccccCCCCC---------CCCCccCccccccccccccCCCCcccCC
Q 000301 332 MSVLNQSPG---SNHMHR----D---S------YGRFAADNKS---------GDNTSLGWNDYMKMADFVGHDSGFLVDD 386 (1701)
Q Consensus 332 L~LLnQ~~g---~~~~~r----~---~------~~~F~~~~~~---------~~~~~~G~~kFI~~sdL~d~~~GYLvdD 386 (1701)
|.||||.++ ..|+.+ + . ...|++|.+. .++.++||+.||++++|. ..+||+||
T Consensus 81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~--~r~yikdD 158 (167)
T cd03783 81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLR--RRSFLKND 158 (167)
T ss_pred EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHh--hCCcccCC
Confidence 999999641 222211 1 1 1237877532 367899999999999999 78999999
Q ss_pred cEEEEEEE
Q 000301 387 TAVFSTSF 394 (1701)
Q Consensus 387 sliIe~~V 394 (1701)
+++|.+++
T Consensus 159 tlfI~~~~ 166 (167)
T cd03783 159 DLIIFVDF 166 (167)
T ss_pred eEEEEEec
Confidence 99999886
No 26
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.75 E-value=5.8e-18 Score=179.35 Aligned_cols=134 Identities=17% Similarity=0.279 Sum_probs=102.9
Q ss_pred cEEEEEEcccccchhhhhhcccCCceecCCcEEEc--CceEEEEEEecCCCCC-CCcEEEEEEEecCCC-CCCCCeEEEE
Q 000301 426 GKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIG--NRDCRLIVYPRGQSQP-PCHLSVFLEVMDSRN-TSSDWSCFVS 501 (1701)
Q Consensus 426 ~~~twkI~nFS~lk~~~k~~k~~G~~i~S~~F~vG--G~~WrI~vYP~G~~~~-~~~LSlYL~l~~~~~-~~~~W~v~a~ 501 (1701)
|+|.|+|.||+...+.. +.+....++||.|+.+ ||+|+|++||+|++.+ ++||||||++++... .-..|.+.++
T Consensus 1 g~~~W~i~~f~~~~~~a--~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~ 78 (147)
T cd03779 1 GTFLWKITDVSQKQRES--SHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHK 78 (147)
T ss_pred CeEEEEECcHHHHHHHH--hcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEE
Confidence 57999999999665522 2222347999999986 9999999999998764 679999999997532 2347999999
Q ss_pred EEEEEEeCCCCCe-eEEecc---ccccc----cCCcCccccccccccccccCCCCCccCCEEEEEEEE
Q 000301 502 HRLSVVNQKMEEK-SVTKES---QNRYS----KAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEV 561 (1701)
Q Consensus 502 F~L~Llnq~~~~~-sv~k~~---~~~F~----~~~~~wG~~~FI~~s~L~d~~sGYLvnDsl~Ie~~V 561 (1701)
|+|+|+||.+... ...... .+.|. ..+..|||.+||++++|+....+||+||+++|+|+|
T Consensus 79 ~tfsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 79 VTFMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 9999999986442 111111 25686 344579999999999996322399999999999988
No 27
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.74 E-value=5.1e-18 Score=179.87 Aligned_cols=135 Identities=17% Similarity=0.292 Sum_probs=109.4
Q ss_pred CcEEEEEEcccccccc-ccccCcccCCccccC-CceEEEEEEecCCC-CccceEEEEEeccCCccccCCCcEE-EEEEEE
Q 000301 258 SGKFTWKVHNFSLFKE-MIKTQKIMSPVFPAG-ECNLRISVYQSSVN-GQEYLSMCLESKDMEKTVVSDRSCW-CLFRMS 333 (1701)
Q Consensus 258 ~g~f~wkI~nFS~lk~-~~k~e~i~S~~F~vg-G~~WrL~vYPnG~~-~~~yLSlyL~L~~~e~d~~~~w~v~-a~ftL~ 333 (1701)
|+.|+|+|.||+.+.+ ..++..++||+|+.+ ||++++.+||||.+ +++|||||+++++|++|..++|||. .+++|.
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~ 80 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDYPGNLAIYLHLTSGPNDDQLQWPCPWQQATMM 80 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCCCCEEEEEEEEeccCCCccccCCCcCCeEEEE
Confidence 4689999999998654 345678999999765 99999999999975 3679999999999999999999998 999999
Q ss_pred EEeCCC---CCCceee--c------c--cccc--cCCCCC-----CC-------CCccCccccccccccccCCCCcccCC
Q 000301 334 VLNQSP---GSNHMHR--D------S--YGRF--AADNKS-----GD-------NTSLGWNDYMKMADFVGHDSGFLVDD 386 (1701)
Q Consensus 334 LLnQ~~---g~~~~~r--~------~--~~~F--~~~~~~-----~~-------~~~~G~~kFI~~sdL~d~~~GYLvdD 386 (1701)
||||.+ ...|+.+ + . ...| ++|.+- .+ +.++||+.||++++|. ..+||+||
T Consensus 81 LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~--~r~yikdD 158 (167)
T cd03782 81 LLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLR--SRDFIKGD 158 (167)
T ss_pred EEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHh--hcCcccCC
Confidence 999964 2234433 1 1 1245 666321 12 7899999999999999 68999999
Q ss_pred cEEEEEEE
Q 000301 387 TAVFSTSF 394 (1701)
Q Consensus 387 sliIe~~V 394 (1701)
+++|-+++
T Consensus 159 ~ifi~~~~ 166 (167)
T cd03782 159 DVIFLLTM 166 (167)
T ss_pred eEEEEEec
Confidence 99998875
No 28
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.72 E-value=3.6e-17 Score=176.38 Aligned_cols=131 Identities=19% Similarity=0.421 Sum_probs=100.9
Q ss_pred CcEEEEEEcccccchhhhhhcccCCceecCCcE-EEcCceEEEEEEecCCCCCCCcEEEEEEEecCCC-CCCCCe-EEEE
Q 000301 425 MGKFTWRIENFTRLKDLLKKRKITGLCIKSRRF-QIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRN-TSSDWS-CFVS 501 (1701)
Q Consensus 425 ~~~~twkI~nFS~lk~~~k~~k~~G~~i~S~~F-~vGG~~WrI~vYP~G~~~~~~~LSlYL~l~~~~~-~~~~W~-v~a~ 501 (1701)
+++|+|+|.|||.+++ +.+.|.+++|++| .+|||+|+|++||+|+....+||||||++++... ....|. +.++
T Consensus 1 cp~hvwkI~~yS~~~~----~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~~~~~lSlyL~L~~g~~d~~L~WP~v~a~ 76 (167)
T cd03771 1 CPEAVWRVRNFSQLLE----TTPKGTKIYSPRFYSPEGYAFQVGLYPNGTESYPGYTGLYFHLCSGENDDVLEWPCPNRQ 76 (167)
T ss_pred CCeEEEEEcCchhhhh----cCCCCCEEECCCCCccCCeEEEEEEEeCCCCCCCCcceEEEEEecCCccccccCcceeEE
Confidence 4689999999999963 1256889999998 8999999999999998654579999999987543 346799 5899
Q ss_pred EEEEEEeCCC---CCeeEEe----cc--------cccccc-----------------CCcCccccccccccccccCCCCC
Q 000301 502 HRLSVVNQKM---EEKSVTK----ES--------QNRYSK-----------------AAKDWGWREFVTLTSLFDQDSGF 549 (1701)
Q Consensus 502 F~L~Llnq~~---~~~sv~k----~~--------~~~F~~-----------------~~~~wG~~~FI~~s~L~d~~sGY 549 (1701)
|+|+|+||.. ...++.. .. ...|.. ++.+|||..||++++|+ +.+|
T Consensus 77 ~t~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~--~r~y 154 (167)
T cd03771 77 ATMTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLR--RRDF 154 (167)
T ss_pred EEEEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhc--cCCC
Confidence 9999999972 1122211 10 001221 33589999999999997 4679
Q ss_pred ccCCEEEEEEEE
Q 000301 550 LVQDTVVFSAEV 561 (1701)
Q Consensus 550 LvnDsl~Ie~~V 561 (1701)
|+||+|.|++++
T Consensus 155 lk~dtl~i~~~~ 166 (167)
T cd03771 155 LKGDDLIILLDF 166 (167)
T ss_pred CcCCEEEEEEEe
Confidence 999999999987
No 29
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.71 E-value=7.1e-17 Score=163.76 Aligned_cols=125 Identities=32% Similarity=0.591 Sum_probs=101.7
Q ss_pred cEEEEEEcccccchhhhhhcccCCceecCCcEEEcCceEEEEEEecCCCCCCCcEEEEEEEecCCCCCCCCeEEEEEEEE
Q 000301 426 GKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLS 505 (1701)
Q Consensus 426 ~~~twkI~nFS~lk~~~k~~k~~G~~i~S~~F~vGG~~WrI~vYP~G~~~~~~~LSlYL~l~~~~~~~~~W~v~a~F~L~ 505 (1701)
++|+|+|.+|+... ++.++|+.|.++|+.|+|.+||+|.....+|+||||+|.........|.+.+.|+|.
T Consensus 1 ~~~~~~i~~~~~~~---------~~~~~S~~f~~~g~~W~l~~~p~~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~ 71 (126)
T cd00121 1 GKHTWKIVNFSELE---------GESIYSPPFEVGGYKWRIRIYPNGDGESGDYLSLYLELDKGESDLEKWSVRAEFTLK 71 (126)
T ss_pred CEEEEEECCCCCCC---------CcEEECCCEEEcCEeEEEEEEcCCCCCCCCEEEEEEEecCCCCCCCCCcEEEEEEEE
Confidence 47999999999822 468999999999999999999999755567999999998765444679999999999
Q ss_pred EEeCCCCCeeEEeccccccc-cCCcCccccccccccccccCCCCCccCCEEEEEEEEE
Q 000301 506 VVNQKMEEKSVTKESQNRYS-KAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVL 562 (1701)
Q Consensus 506 Llnq~~~~~sv~k~~~~~F~-~~~~~wG~~~FI~~s~L~d~~sGYLvnDsl~Ie~~V~ 562 (1701)
|+|+++++ +..+...+.|. ....+|||.+||++++|.+ .+|++||+|+|+|+|.
T Consensus 72 l~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 72 LVNQNGGK-SLSKSFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK 126 (126)
T ss_pred EECCCCCc-cceEeccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence 99998433 33344445553 4568999999999999974 4449999999999983
No 30
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.71 E-value=9.7e-17 Score=162.74 Aligned_cols=124 Identities=29% Similarity=0.583 Sum_probs=101.4
Q ss_pred EEEEEEeccccCCCceeecCcEEEcCeeEEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCceEEEEEEEEEEecCCCc
Q 000301 94 VCRWTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDES 173 (1701)
Q Consensus 94 ~~tw~I~nfS~lk~~~~~Sp~F~vGG~~WrL~vyP~G~~~~~~~~LSvYL~~~~~~~~~~~~W~v~a~f~l~Lvn~~d~~ 173 (1701)
+|+|+|.+|+...++.++|+.|.++|++|+|.+||+|+.. ..+|+||||+|.... .....|.+.++|+|.|+|+++.
T Consensus 2 ~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~-~~~~~~~~~~~~~~~l~~~~~~- 78 (126)
T cd00121 2 KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGE-SDLEKWSVRAEFTLKLVNQNGG- 78 (126)
T ss_pred EEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCC-CCCCCCcEEEEEEEEEECCCCC-
Confidence 6899999999955689999999999999999999999754 467999999998765 2346799999999999999832
Q ss_pred ceeeccceeecC-CCCCCCccCCCccccccccCCCCceecCCEEEEEEEEE
Q 000301 174 KTIHRDSWHRFS-SKKKSHGWCDFTPSSTVFDSKLGYLFNNDAVLITADIL 223 (1701)
Q Consensus 174 ~si~~~~~h~Fs-~~~~~wG~~~FI~~~~L~dp~~GfL~d~DsLtIea~V~ 223 (1701)
.+......+.|. ....+|||.+||+|++|.+ .+++.| |+|+|+|+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~-d~l~i~~~v~ 126 (126)
T cd00121 79 KSLSKSFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVD-DSLTIEVEVK 126 (126)
T ss_pred ccceEeccCCcCCCCCCCCChHHeeEHHHhcc--CCcEEC-CEEEEEEEEC
Confidence 233334445553 5568999999999999995 334888 9999999983
No 31
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.70 E-value=1.3e-16 Score=171.00 Aligned_cols=135 Identities=21% Similarity=0.293 Sum_probs=106.9
Q ss_pred CCCcEEEEEEcccccchhhhhhcccCCceecCCcEEE--cCceEEEEEEecCCCCC-CCcEEEEEEEecCCCCC-CCCeE
Q 000301 423 GHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQI--GNRDCRLIVYPRGQSQP-PCHLSVFLEVMDSRNTS-SDWSC 498 (1701)
Q Consensus 423 ~~~~~~twkI~nFS~lk~~~k~~k~~G~~i~S~~F~v--GG~~WrI~vYP~G~~~~-~~~LSlYL~l~~~~~~~-~~W~v 498 (1701)
...|+|+|+|.|||.+.+.. ..+....++||.|+. +||+|+|++||+|++.+ +.|||+|++++++++.. ..|++
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a--~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf 93 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEA--VAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPF 93 (164)
T ss_pred ccCCEEEEEECcHHHHHHHH--hcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCce
Confidence 45799999999999887632 122234799999998 49999999999998765 56999999999988766 79999
Q ss_pred EEEEEEEEEeCCCCCeeEEecc-----ccccc----cCCcCccccccccccccccCCCCCccCCEEEEEEEE
Q 000301 499 FVSHRLSVVNQKMEEKSVTKES-----QNRYS----KAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEV 561 (1701)
Q Consensus 499 ~a~F~L~Llnq~~~~~sv~k~~-----~~~F~----~~~~~wG~~~FI~~s~L~d~~sGYLvnDsl~Ie~~V 561 (1701)
+.+++|+|+||.+.. ++.... ...|. ..+.+|||..|+++++|.. ..|||+||++.|+|.|
T Consensus 94 ~~~itl~llDQ~~r~-hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~-~~~Yv~dDtlfIk~~V 163 (164)
T cd03778 94 NQKVTLMLLDQNNRE-HVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEA-KNSYVRDDAIFIKAIV 163 (164)
T ss_pred eeEEEEEEECCCCCC-cceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccc-cCCcccCCeEEEEEEE
Confidence 999999999998533 333211 11342 2345799999999999974 3699999999999987
No 32
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.65 E-value=2.8e-16 Score=159.33 Aligned_cols=118 Identities=33% Similarity=0.551 Sum_probs=96.2
Q ss_pred EcccccchhhhhhcccCCceecCCcEEEcCceEEEEEEecCCCCCCCcEEEEEEEecCCCCC-CCCeEEEEEEEEEEeCC
Q 000301 432 IENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTS-SDWSCFVSHRLSVVNQK 510 (1701)
Q Consensus 432 I~nFS~lk~~~k~~k~~G~~i~S~~F~vGG~~WrI~vYP~G~~~~~~~LSlYL~l~~~~~~~-~~W~v~a~F~L~Llnq~ 510 (1701)
|+|||.+++ .+.++.|+.|.+||++|+|.+||+|+ ++|+++||+|..+.... ..|+|.+.|++.|+++.
T Consensus 1 i~nfs~l~~-------~~~~~~s~~~~~~g~~W~l~~~~~~~---~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~ 70 (119)
T PF00917_consen 1 IKNFSKLKE-------GEEYSSSFVFSHGGYPWRLKVYPKGN---GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQN 70 (119)
T ss_dssp ETTGGGHHT-------SEEEEEEEESSTTSEEEEEEEETTES---TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TT
T ss_pred CcccceEeC-------CCcEECCCeEEECCEEEEEEEEeCCC---cCcEEEEEEEeecccccccceeeeEEEEEEEecCC
Confidence 789999974 13455668999999999999999986 57999999999875433 58999999999999999
Q ss_pred CCCeeEEeccccccccCCcCccccccccccccccCCCCCccCCEEEEEEEEEE
Q 000301 511 MEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLI 563 (1701)
Q Consensus 511 ~~~~sv~k~~~~~F~~~~~~wG~~~FI~~s~L~d~~sGYLvnDsl~Ie~~V~V 563 (1701)
++....... .+.|.. ..+|||.+||+|++|.++ +|++||+++|+|+|+|
T Consensus 71 ~~~~~~~~~-~~~F~~-~~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 71 GKSISKRIK-SHSFNN-PSSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI 119 (119)
T ss_dssp SCEEEEEEE-CEEECT-TSEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred CCcceeeee-eeEEee-ecccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence 865332222 578864 478999999999999853 3899999999999987
No 33
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.64 E-value=1.6e-16 Score=161.10 Aligned_cols=117 Identities=30% Similarity=0.575 Sum_probs=95.9
Q ss_pred EeccccCCC-cee-ecCcEEEcCeeEEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCceEEEEEEEEEEecCCCccee
Q 000301 99 VHNFPRIRA-RAL-WSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESKTI 176 (1701)
Q Consensus 99 I~nfS~lk~-~~~-~Sp~F~vGG~~WrL~vyP~G~~~~~~~~LSvYL~~~~~~~~~~~~W~v~a~f~l~Lvn~~d~~~si 176 (1701)
|+|||.++. +.. .|++|.+||++|+|.+||+|+ .+|+++||+|..+.......|+|.++|++.|+++.++....
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 76 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK 76 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence 789999973 333 448899999999999999997 47999999999986222358999999999999999876333
Q ss_pred eccceeecCCCCCCCccCCCccccccccCCCCceecCCEEEEEEEEEE
Q 000301 177 HRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNDAVLITADILI 224 (1701)
Q Consensus 177 ~~~~~h~Fs~~~~~wG~~~FI~~~~L~dp~~GfL~d~DsLtIea~V~V 224 (1701)
... .+.|... .+|||.+||+|++|.++. |+.| |+++|+|+|+|
T Consensus 77 ~~~-~~~F~~~-~~~g~~~fi~~~~l~~~~--fl~d-d~l~ie~~v~I 119 (119)
T PF00917_consen 77 RIK-SHSFNNP-SSWGWSSFISWEDLEDPY--FLVD-DSLTIEVEVKI 119 (119)
T ss_dssp EEE-CEEECTT-SEEEEEEEEEHHHHTTCT--TSBT-TEEEEEEEEEE
T ss_pred eee-eeEEeee-cccchhheeEHHHhCccC--CeEC-CEEEEEEEEEC
Confidence 322 5889764 899999999999999643 8999 99999999987
No 34
>smart00061 MATH meprin and TRAF homology.
Probab=99.48 E-value=1.6e-13 Score=133.42 Aligned_cols=93 Identities=26% Similarity=0.432 Sum_probs=79.1
Q ss_pred EEEEEeccccCC-CceeecCcEEEcCeeEEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCceEEEEEEEEEEecCCCc
Q 000301 95 CRWTVHNFPRIR-ARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDES 173 (1701)
Q Consensus 95 ~tw~I~nfS~lk-~~~~~Sp~F~vGG~~WrL~vyP~G~~~~~~~~LSvYL~~~~~~~~~~~~W~v~a~f~l~Lvn~~d~~ 173 (1701)
++|+|+||+.+. ++.++|+.|.+||++|+|.+||++ +|||+||.|.+.. ..+..|++.|+|+|.|+|++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~~------~~lsl~L~~~~~~-~~~~~w~v~a~~~~~l~~~~~~~ 74 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRKN------GFLSLYLHCEKEE-CDSRKWSIEAEFTLKLVSQNGKS 74 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEcC------CEEEEEEEeCCCc-CCCCCeEEEEEEEEEEEeCCCCE
Confidence 689999999984 578999999999999999999983 6999999998765 33447999999999999998764
Q ss_pred ceeeccceeecCCCCCCCccCCCc
Q 000301 174 KTIHRDSWHRFSSKKKSHGWCDFT 197 (1701)
Q Consensus 174 ~si~~~~~h~Fs~~~~~wG~~~FI 197 (1701)
. .....+.|.. ..+|||.+||
T Consensus 75 ~--~~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 75 L--SKKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred E--eeeeeEEEcC-CCccceeeEC
Confidence 3 3446788986 6899999886
No 35
>smart00061 MATH meprin and TRAF homology.
Probab=99.48 E-value=1.4e-13 Score=133.72 Aligned_cols=94 Identities=24% Similarity=0.426 Sum_probs=79.3
Q ss_pred EEEEEcccccchhhhhhcccCCceecCCcEEEcCceEEEEEEecCCCCCCCcEEEEEEEecCCCCCCCCeEEEEEEEEEE
Q 000301 428 FTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLSVV 507 (1701)
Q Consensus 428 ~twkI~nFS~lk~~~k~~k~~G~~i~S~~F~vGG~~WrI~vYP~G~~~~~~~LSlYL~l~~~~~~~~~W~v~a~F~L~Ll 507 (1701)
++|+|+||+.+.. |+.++|+.|.+||++|+|.+||+ .+|+|+||.|.+....+.+|++.|+|+|+|+
T Consensus 2 ~~~~~~~~~~~~~--------~~~~~S~~f~~~g~~W~i~~~p~-----~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~ 68 (95)
T smart00061 2 LSHTFKNVSRLEE--------GESYFSPSEEHFNIPWRLKIYRK-----NGFLSLYLHCEKEECDSRKWSIEAEFTLKLV 68 (95)
T ss_pred ceeEEEchhhccc--------CceEeCChhEEcCceeEEEEEEc-----CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEE
Confidence 5799999999853 56899999999999999999999 3799999999876554558999999999999
Q ss_pred eCCCCCeeEEeccccccccCCcCccccccc
Q 000301 508 NQKMEEKSVTKESQNRYSKAAKDWGWREFV 537 (1701)
Q Consensus 508 nq~~~~~sv~k~~~~~F~~~~~~wG~~~FI 537 (1701)
|++++.. .+...+.|.. ..+|||.+||
T Consensus 69 ~~~~~~~--~~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 69 SQNGKSL--SKKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred eCCCCEE--eeeeeEEEcC-CCccceeeEC
Confidence 9997543 3345678875 6789999986
No 36
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=9e-14 Score=169.74 Aligned_cols=135 Identities=23% Similarity=0.476 Sum_probs=117.2
Q ss_pred cceEEEEEEeccccCCCceeecCcEEEcCeeEEEEEEECCCCCCCCCcEEEEEEEeCCCC--CCCCCceEEEEEEEEEEe
Q 000301 91 HSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRG--TSSSKWDCFASYRLAIVN 168 (1701)
Q Consensus 91 ~~~~~tw~I~nfS~lk~~~~~Sp~F~vGG~~WrL~vyP~G~~~~~~~~LSvYL~~~~~~~--~~~~~W~v~a~f~l~Lvn 168 (1701)
....++|+|++|+.+. ++++||.|.+||+.|+|.++|.|+.+. .+||||+....+. .....|.|+|+|.|.|-|
T Consensus 37 ~~~sftW~vk~wsel~-~k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~ 112 (1089)
T COG5077 37 LEMSFTWKVKRWSELA-KKVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDISN 112 (1089)
T ss_pred hhcccceecCChhhhh-hhccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeecCC
Confidence 4577999999999996 589999999999999999999998763 3999999876431 123459999999999999
Q ss_pred cCCCcceeeccceeecCCCCCCCccCCCccccccccCCCC---ceecCCEEEEEEEEEEecCccc
Q 000301 169 LSDESKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLG---YLFNNDAVLITADILILNESVS 230 (1701)
Q Consensus 169 ~~d~~~si~~~~~h~Fs~~~~~wG~~~FI~~~~L~dp~~G---fL~d~DsLtIea~V~Vlke~~~ 230 (1701)
++.+.......+.|+|+....+|||.+|+.++.|..|..| |+.+ |.+.|.|+|+|+++|++
T Consensus 113 p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppflee-g~l~ItvyVRvlkdPTG 176 (1089)
T COG5077 113 PKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEE-GTLVITVYVRVLKDPTG 176 (1089)
T ss_pred CCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccC-CeEEEEEEEEEEeCCcc
Confidence 9988877777889999999999999999999999877666 7888 99999999999998753
No 37
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.40 E-value=1e-12 Score=139.99 Aligned_cols=131 Identities=21% Similarity=0.387 Sum_probs=102.7
Q ss_pred CcEEEEEEcccccchhhhhhcccCCceecCCcEEE-cCceEEEEEEecCCCCCCCcEEEEEEEecCCCC-CCCCeEE-EE
Q 000301 425 MGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQI-GNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNT-SSDWSCF-VS 501 (1701)
Q Consensus 425 ~~~~twkI~nFS~lk~~~k~~k~~G~~i~S~~F~v-GG~~WrI~vYP~G~~~~~~~LSlYL~l~~~~~~-~~~W~v~-a~ 501 (1701)
++.|+|+|.||+++.+. .+.+..++||.|+. .||+.++.+||+|++.+++|||||++++++++. -..|++. -+
T Consensus 1 cp~~iWkI~~fs~~~~~----~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~~~~lsl~~~lm~Ge~D~~L~WPf~~~q 76 (167)
T cd03782 1 CPEHIWHIRNFTQLLAT----TPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDYPGNLAIYLHLTSGPNDDQLQWPCPWQQ 76 (167)
T ss_pred CCcEEEEeCcHHHHHHh----cCCCceEECCCCcCccCceeEEEEEecCCCCCCCEEEEEEEEeccCCCccccCCCcCCe
Confidence 35799999999988762 24467899999997 599999999999987666799999999997654 3689999 89
Q ss_pred EEEEEEeCCC---CCeeEEe--cc------c--ccc--ccC-----------------CcCccccccccccccccCCCCC
Q 000301 502 HRLSVVNQKM---EEKSVTK--ES------Q--NRY--SKA-----------------AKDWGWREFVTLTSLFDQDSGF 549 (1701)
Q Consensus 502 F~L~Llnq~~---~~~sv~k--~~------~--~~F--~~~-----------------~~~wG~~~FI~~s~L~d~~sGY 549 (1701)
++|.|+||+. ...++.. .. . ..| ... +.+|||+.||+.+.|+ +..|
T Consensus 77 it~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~--~r~y 154 (167)
T cd03782 77 ATMMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLR--SRDF 154 (167)
T ss_pred EEEEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHh--hcCc
Confidence 9999999963 2233322 10 0 134 221 5689999999999997 5889
Q ss_pred ccCCEEEEEEEE
Q 000301 550 LVQDTVVFSAEV 561 (1701)
Q Consensus 550 LvnDsl~Ie~~V 561 (1701)
|+||++.|-+++
T Consensus 155 ikdD~ifi~~~~ 166 (167)
T cd03782 155 IKGDDVIFLLTM 166 (167)
T ss_pred ccCCeEEEEEec
Confidence 999999997765
No 38
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.36 E-value=2.4e-12 Score=137.85 Aligned_cols=131 Identities=19% Similarity=0.400 Sum_probs=100.1
Q ss_pred CcEEEEEEcccccchhhhhhcccCCceecCCcEEEc-CceEEEEEEecCCCC-C-CCcEEEEEEEecCCCC-CCCCeE-E
Q 000301 425 MGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIG-NRDCRLIVYPRGQSQ-P-PCHLSVFLEVMDSRNT-SSDWSC-F 499 (1701)
Q Consensus 425 ~~~~twkI~nFS~lk~~~k~~k~~G~~i~S~~F~vG-G~~WrI~vYP~G~~~-~-~~~LSlYL~l~~~~~~-~~~W~v-~ 499 (1701)
++.++|+|.||+++.+. . ..+..++||.|+.. ||+.+|++||+|+.. + +.|+|||++++.+++. -..|.+ .
T Consensus 1 cp~~iWkI~nfs~~~~~---a-~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~ 76 (167)
T cd03783 1 CPNAVWRVRNFSQILEN---T-TKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALN 76 (167)
T ss_pred CCceeEEECcHHHHHHh---C-cCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcC
Confidence 35689999999988762 1 14678999999984 999999999999864 3 6799999999997654 368995 5
Q ss_pred EEEEEEEEeCCC---CCeeE----Eecc---c------ccccc--------------CCcCccccccccccccccCCCCC
Q 000301 500 VSHRLSVVNQKM---EEKSV----TKES---Q------NRYSK--------------AAKDWGWREFVTLTSLFDQDSGF 549 (1701)
Q Consensus 500 a~F~L~Llnq~~---~~~sv----~k~~---~------~~F~~--------------~~~~wG~~~FI~~s~L~d~~sGY 549 (1701)
-+.+|.|+||+. ...++ +... . ..|+. ++.+|||+.||+.+.|+ ..+|
T Consensus 77 ~~itl~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~--~r~y 154 (167)
T cd03783 77 RQAIITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLR--RRSF 154 (167)
T ss_pred CEEEEEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHh--hCCc
Confidence 689999999963 22222 1111 0 11432 34589999999999997 5899
Q ss_pred ccCCEEEEEEEE
Q 000301 550 LVQDTVVFSAEV 561 (1701)
Q Consensus 550 LvnDsl~Ie~~V 561 (1701)
|+||++.|.+++
T Consensus 155 ikdDtlfI~~~~ 166 (167)
T cd03783 155 LKNDDLIIFVDF 166 (167)
T ss_pred ccCCeEEEEEec
Confidence 999999998876
No 39
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.2e-12 Score=154.66 Aligned_cols=144 Identities=26% Similarity=0.585 Sum_probs=117.4
Q ss_pred CCcEEEEEEcccccchhhhhhcccCCceecCCcEEEcCceEEEEEEecCCCCCCCcEEEEEEEecCC---CCCCCCeEEE
Q 000301 424 HMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSR---NTSSDWSCFV 500 (1701)
Q Consensus 424 ~~~~~twkI~nFS~lk~~~k~~k~~G~~i~S~~F~vGG~~WrI~vYP~G~~~~~~~LSlYL~l~~~~---~~~~~W~v~a 500 (1701)
....|+|+|++||.+.. .+.||.|.+||+.|+|.++|.|+.+.+ +||||+..-.. .....|.|+|
T Consensus 37 ~~~sftW~vk~wsel~~----------k~~Sp~F~vg~~twki~lfPqG~nq~~--~sVyLe~~pqe~e~~~gk~~~cca 104 (1089)
T COG5077 37 LEMSFTWKVKRWSELAK----------KVESPPFSVGGHTWKIILFPQGNNQCN--VSVYLEYEPQELEETGGKYYDCCA 104 (1089)
T ss_pred hhcccceecCChhhhhh----------hccCCcccccCeeEEEEEecccCCccc--cEEEEEeccchhhhhcCcchhhhh
Confidence 35679999999999864 368999999999999999999987643 99999876422 1124599999
Q ss_pred EEEEEEEeCCCCCeeEEeccccccccCCcCccccccccccccccCCCC---CccCCEEEEEEEEEEEec-cccc-ccCCC
Q 000301 501 SHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSG---FLVQDTVVFSAEVLILKE-TSIM-QDFTD 575 (1701)
Q Consensus 501 ~F~L~Llnq~~~~~sv~k~~~~~F~~~~~~wG~~~FI~~s~L~d~~sG---YLvnDsl~Ie~~V~Vlk~-t~~~-~~~~~ 575 (1701)
+|-|.|-|...+.......+.|+|+...++|||.+||.+..|..|+.| |+.+|++.|.+.|.|++. +|++ +.+.+
T Consensus 105 qFaf~Is~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVLWHsF~n 184 (1089)
T COG5077 105 QFAFDISNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHSFLN 184 (1089)
T ss_pred heeeecCCCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccceeecccc
Confidence 999999998775545555677899988899999999999999887665 799999999999999985 5654 66666
Q ss_pred CCCc
Q 000301 576 QDTE 579 (1701)
Q Consensus 576 ~~s~ 579 (1701)
|+|+
T Consensus 185 YnSK 188 (1089)
T COG5077 185 YNSK 188 (1089)
T ss_pred cccc
Confidence 7765
No 40
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.16 E-value=5.8e-08 Score=134.18 Aligned_cols=151 Identities=21% Similarity=0.373 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000301 1434 EMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERL 1513 (1701)
Q Consensus 1434 e~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~ekl 1513 (1701)
.+.+++.++..++.+++.++.++. ..++.+.+|..|++.++++++++..++...+. +++.+ ....
T Consensus 951 ~~~k~~~Ek~~~e~~~~~l~~e~~----~~~e~~~kL~kekk~lEe~~~~l~~~l~~~ee----k~~~l-------~k~~ 1015 (1930)
T KOG0161|consen 951 TLQKLELEKNAAENKLKNLEEEIN----SLDENISKLSKEKKELEERIRELQDDLQAEEE----KAKSL-------NKAK 1015 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------HHHH
Confidence 344555555555555555555554 35566777777777777777777666655432 12222 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1514 KSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTL 1593 (1701)
Q Consensus 1514 k~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eL 1593 (1701)
.+++.++..++..+++-++....+|..++++++++..+++.+..++..+.+++.++.+.+.++..+..++++.+..+..+
T Consensus 1016 ~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l 1095 (1930)
T KOG0161|consen 1016 AKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQL 1095 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33444444445555555555555566667777777777777777777777777777777777766666666666666666
Q ss_pred HHHHHH
Q 000301 1594 EAQLQE 1599 (1701)
Q Consensus 1594 e~~l~e 1599 (1701)
++++++
T Consensus 1096 ~k~i~e 1101 (1930)
T KOG0161|consen 1096 QKQIKE 1101 (1930)
T ss_pred HHHHHH
Confidence 666633
No 41
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.08 E-value=4.4e-07 Score=114.01 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000301 1464 DDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKR 1496 (1701)
Q Consensus 1464 Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kq 1496 (1701)
||+.+.||.|...+++|+++++.+++-|+.+.+
T Consensus 324 EERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 324 EERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888888888888777777666554
No 42
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=4.6e-07 Score=112.25 Aligned_cols=168 Identities=23% Similarity=0.318 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHH-HHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------
Q 000301 1432 RAEMDRFAREKKELSEQMR-EVES-QLEWL---RSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKR---------- 1496 (1701)
Q Consensus 1432 eee~~rL~~ek~eLE~~l~-ELE~-rLe~l---~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kq---------- 1496 (1701)
+.++++.++.+++||++.+ +.|. +..++ +.++.+.+-.+.+.++.|+.+++.|..++.++..+.+
T Consensus 392 kkeie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~k 471 (1118)
T KOG1029|consen 392 KKEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQK 471 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHH
Confidence 4456666666666666554 2221 11111 1133344445555555555555555555555443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1497 DELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYI 1576 (1701)
Q Consensus 1497 eelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l 1576 (1701)
.++..+.+.++.....++.+.+++.++.+.+-++.-|+..+...++..+........+..+|++.+.+.+.-+.+++..+
T Consensus 472 t~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdql 551 (1118)
T KOG1029|consen 472 TEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQL 551 (1118)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777888888888888888888888888888888887777766666666666677777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1577 DGMESKLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1577 ~~lE~eL~e~q~~I~eLe~~l~e 1599 (1701)
..++.+.+.-..+|..+..++.+
T Consensus 552 delskE~esk~~eidi~n~qlke 574 (1118)
T KOG1029|consen 552 DELSKETESKLNEIDIFNNQLKE 574 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Confidence 77777777777777777777743
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.05 E-value=4.9e-06 Score=103.64 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=22.8
Q ss_pred ccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHH
Q 000301 1359 IIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDE 1398 (1701)
Q Consensus 1359 ~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkE 1398 (1701)
.|.|=-..+...++...++.+.|.+....++.+.+.++++
T Consensus 133 vV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~ 172 (546)
T PF07888_consen 133 VVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREE 172 (546)
T ss_pred EEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555445555566665566666666666665555555543
No 44
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.03 E-value=5.4e-07 Score=125.13 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1547 EVRRLTQTVGQTEGEKREKEEQVA 1570 (1701)
Q Consensus 1547 el~elee~i~~lek~k~~LE~~i~ 1570 (1701)
++..+++++..++.++..++..+.
T Consensus 874 ~~~~~~~~~~~l~~~~~~~~~~~~ 897 (1179)
T TIGR02168 874 ELEALLNERASLEEALALLRSELE 897 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 45
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.01 E-value=1.6e-11 Score=145.17 Aligned_cols=268 Identities=23% Similarity=0.325 Sum_probs=187.6
Q ss_pred EEEEEcccccchhhhhhcccCCceecCCcEEEcCceEEEEEEecCCCCCCCcEEEEEEEecCCCCCCCCeEEEEEEEEEE
Q 000301 428 FTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRLSVV 507 (1701)
Q Consensus 428 ~twkI~nFS~lk~~~k~~k~~G~~i~S~~F~vGG~~WrI~vYP~G~~~~~~~LSlYL~l~~~~~~~~~W~v~a~F~L~Ll 507 (1701)
+.|.|.||+... ..++|..|..||..|++.+||.|+ |++.|+.+.... +|.+.+.++|.++
T Consensus 6 ~~~~~~~~~~~~----------l~~ys~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----~~~~~~~~~l~v~ 66 (297)
T KOG1987|consen 6 FTWVISNFSSVG----------LVIYSNGFVKGGCKWRLSAYPKGN-----YLSLTLSVSDSP----GWERYAKLRLTVV 66 (297)
T ss_pred cceeeccCcchh----------hhccccceeecCceEEEEEecCCC-----EEEEEEEeccCC----CcceeEEEEEEEc
Confidence 448999998775 257899999999999999999984 799999887532 8999999999999
Q ss_pred eCCCCCe-eEEeccccccccC--CcCccccccccccccccCCCCCccCCEEEEEEEEEEEecccccccCCCCCCcccccC
Q 000301 508 NQKMEEK-SVTKESQNRYSKA--AKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSIMQDFTDQDTESTNAG 584 (1701)
Q Consensus 508 nq~~~~~-sv~k~~~~~F~~~--~~~wG~~~FI~~s~L~d~~sGYLvnDsl~Ie~~V~Vlk~t~~~~~~~~~~s~~~~~g 584 (1701)
|+....+ +........|... ...||+..+++...+.+...||++++.+++-+.+.|++.....+..... ....
T Consensus 67 n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~-~~~~--- 142 (297)
T KOG1987|consen 67 NQKSEKYLSTVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKES-SKLI--- 142 (297)
T ss_pred cCCCcceeeeeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeecccccchhc-cccc---
Confidence 9987654 3332233444333 5789999999999999888999999888888888888765543321100 0000
Q ss_pred ccccccCCc----eEEEEEeecchhhHHHhhhccccCcceecCCceeEEEEEecC------CeEEEEEEecC--CCCCCC
Q 000301 585 SQMDKIGKR----SSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESF------DTICIYLESDQ--SVGSDL 652 (1701)
Q Consensus 585 ~~l~~~g~d----vtFt~~~EnFsAhk~VLAaR~~~SpvF~~gg~~WrI~Vyp~~------~~LslyL~~d~--~~~~~~ 652 (1701)
...+..+.. .-|+|.+.+|+..+.+-..+.+.+-.|..++..||+..+|.+ ..++.||+..+ ......
T Consensus 143 ~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (297)
T KOG1987|consen 143 TLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAK 222 (297)
T ss_pred cccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHH
Confidence 111222333 779999999999988765556667889999999999999872 36668888644 222223
Q ss_pred CccEEEEEEEEEecCCCCCc---ceEeecccccCccccc-ccceeeccccccccCCccccceEEEEEEEe
Q 000301 653 DKNFWVRYRMAVVNQKNPTK---TVWKESSICTKTWNNS-VLQFMKVSDMLEADAGFLMRDTVVFVCEIL 718 (1701)
Q Consensus 653 ~~s~~ve~~L~i~nQ~~g~~---~~~k~s~~~~~~w~~g-~~kfm~l~dl~d~~~GyLvnDtli~eaeVl 718 (1701)
...+++...+..+|+...+. ...+....+...+..+ +.+++.+.++.....||++++++.++++..
T Consensus 223 ~~~~~~~~~~~~ld~l~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 292 (297)
T KOG1987|consen 223 SALTYVIAAGFKLDWLEKKLNEVKEKKKKDLWYEIRLQELEEELKSLKDKCSDLEGLLVKDKAEVEAESE 292 (297)
T ss_pred HHHHHHHhccchHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhcccC
Confidence 44566777777777765321 1111111111111111 567999999999999999999999988753
No 46
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.01 E-value=6.9e-07 Score=124.05 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1536 TREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQ 1598 (1701)
Q Consensus 1536 ~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~ 1598 (1701)
.+++.+..++.++..+++++.+++.+...++..+..++.++..++.++...+.++..++.++.
T Consensus 877 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~ 939 (1179)
T TIGR02168 877 ALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID 939 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444455555555555555555554443
No 47
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.00 E-value=9.8e-07 Score=122.71 Aligned_cols=9 Identities=11% Similarity=0.386 Sum_probs=5.1
Q ss_pred cchhhHHHH
Q 000301 1201 RHFSDIYIL 1209 (1701)
Q Consensus 1201 ~~~~d~~~l 1209 (1701)
..++|...+
T Consensus 37 S~ildAi~~ 45 (1164)
T TIGR02169 37 SNIGDAILF 45 (1164)
T ss_pred HHHHHHHHH
Confidence 566775443
No 48
>PRK02224 chromosome segregation protein; Provisional
Probab=98.94 E-value=2.2e-06 Score=116.18 Aligned_cols=7 Identities=43% Similarity=0.567 Sum_probs=2.9
Q ss_pred hHHHHHH
Q 000301 977 QSAELLG 983 (1701)
Q Consensus 977 ~~~~l~~ 983 (1701)
..++|||
T Consensus 117 ~i~~llg 123 (880)
T PRK02224 117 EVTELLR 123 (880)
T ss_pred HHHHHHC
Confidence 3444444
No 49
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.88 E-value=6.9e-06 Score=102.37 Aligned_cols=28 Identities=36% Similarity=0.277 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcCCCC
Q 000301 1618 KELETLARIHEEGLRQIHTLQQCKGSPA 1645 (1701)
Q Consensus 1618 ~e~e~L~~~~~~~~k~ir~lq~~~~~~~ 1645 (1701)
+|.|.|+.-.-.+.+=|+.|.+|++--+
T Consensus 431 kEKEql~~EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 431 KEKEQLQEEKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666777777778999999999987443
No 50
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.88 E-value=6.3e-06 Score=114.49 Aligned_cols=85 Identities=24% Similarity=0.316 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1509 LAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQ 1588 (1701)
Q Consensus 1509 L~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~ 1588 (1701)
+..++..++.++..+++++..+..+...++..+..+..++..++.++.+++.....++..+..++.+++.++.++.++..
T Consensus 826 ~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~ 905 (1163)
T COG1196 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHH
Q 000301 1589 YIHTL 1593 (1701)
Q Consensus 1589 ~I~eL 1593 (1701)
+++.+
T Consensus 906 ~~~~~ 910 (1163)
T COG1196 906 EIEKL 910 (1163)
T ss_pred HHHHH
Confidence 33333
No 51
>PRK02224 chromosome segregation protein; Provisional
Probab=98.86 E-value=9.3e-06 Score=110.22 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhh
Q 000301 1620 LETLARIHEEGLRQIHTLQQC 1640 (1701)
Q Consensus 1620 ~e~L~~~~~~~~k~ir~lq~~ 1640 (1701)
.+.|..-+.++.+.+..+..+
T Consensus 648 ~e~l~~~~~~~~~~~~~l~~~ 668 (880)
T PRK02224 648 IEEAREDKERAEEYLEQVEEK 668 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555433
No 52
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.82 E-value=1.3e-05 Score=101.19 Aligned_cols=41 Identities=29% Similarity=0.520 Sum_probs=33.9
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 000301 1425 NRLKSEM-RAEMDRFAREKKELSEQMREVESQLEWLRSERDD 1465 (1701)
Q Consensus 1425 ~elkaEl-eee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee 1465 (1701)
..+..|| +++.+.|+.+..-+.+++.+|+-.|+-++.|.++
T Consensus 316 aTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 316 ATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445565 7788999999999999999999999999988764
No 53
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.81 E-value=4.8e-06 Score=96.09 Aligned_cols=90 Identities=20% Similarity=0.305 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1508 ALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQ 1587 (1701)
Q Consensus 1508 aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q 1587 (1701)
.++.++..++.++......+..+.........+...++.++..|+++++.++.+....+..+.+|+.++..++.+|...+
T Consensus 138 ~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 138 AAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333332222233334455555555555555555555566666666666666666666555
Q ss_pred HHHHHHHHHH
Q 000301 1588 QYIHTLEAQL 1597 (1701)
Q Consensus 1588 ~~I~eLe~~l 1597 (1701)
.....++..+
T Consensus 218 ~~~~~~~~el 227 (237)
T PF00261_consen 218 EKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 54
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.81 E-value=3.6e-09 Score=125.36 Aligned_cols=273 Identities=17% Similarity=0.262 Sum_probs=176.6
Q ss_pred EEEEEeccccCCCceeecCcEEEcCeeEEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCceEEEEEEEEEEecCCCcc
Q 000301 95 CRWTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESK 174 (1701)
Q Consensus 95 ~tw~I~nfS~lk~~~~~Sp~F~vGG~~WrL~vyP~G~~~~~~~~LSvYL~~~~~~~~~~~~W~v~a~f~l~Lvn~~d~~~ 174 (1701)
++|.+.||+... ..+||..|..||..|++.+||.|+ |++.|+.+.... +|.+++.++|.++|+.....
T Consensus 6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~l~v~n~~~~~~ 73 (297)
T KOG1987|consen 6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP-----GWERYAKLRLTVVNQKSEKY 73 (297)
T ss_pred cceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC-----CcceeEEEEEEEccCCCcce
Confidence 449999999886 789999999999999999999985 799999885542 79999999999999986532
Q ss_pred -eeeccceee--cCCCCCCCccCCCccccccccCCCCceecCCEEEEEEEEEEecCccccccCCcccCCCcccccccccC
Q 000301 175 -TIHRDSWHR--FSSKKKSHGWCDFTPSSTVFDSKLGYLFNNDAVLITADILILNESVSFMRDNNELQSPSMVSSSVVAG 251 (1701)
Q Consensus 175 -si~~~~~h~--Fs~~~~~wG~~~FI~~~~L~dp~~GfL~d~DsLtIea~V~Vlke~~~f~~~~~e~~~~~~~~~~~v~~ 251 (1701)
+........ |..-...||+..+++...+.+...||+.+ +.+++-+.+.|++......... .+.+.. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~-~~~~~~a~~~V~~~~~~~d~~~---~~~~~~---~~~d 146 (297)
T KOG1987|consen 74 LSTVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVA-HKLVLVARSEVFEAMGKSDVFK---ESSKLI---TLLE 146 (297)
T ss_pred eeeeeeeEEeccccccccccCcccccChHHhhcccCcEEEc-CceEEEeeecceeeecccccch---hccccc---cccc
Confidence 322123333 33336799999999999999988999999 7888888877776533211100 000000 0001
Q ss_pred CcccccC----cEEEEEEccccccccccccCcccCCccccCCceEEEEEEecCCCC--ccceEEEEEeccCCccc-cCCC
Q 000301 252 PVSDVLS----GKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNG--QEYLSMCLESKDMEKTV-VSDR 324 (1701)
Q Consensus 252 ~~sd~~~----g~f~wkI~nFS~lk~~~k~e~i~S~~F~vgG~~WrL~vYPnG~~~--~~yLSlyL~L~~~e~d~-~~~w 324 (1701)
..... ..|+|.+.+|+..........+++..|..++..|++.++|.+.+. ..+++.||...+..... ...-
T Consensus 147 --~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 224 (297)
T KOG1987|consen 147 --EKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSA 224 (297)
T ss_pred --cchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHH
Confidence 11112 679999999998876544456778899999999999999998653 45777888766532211 1111
Q ss_pred cEEEEEEEEEEeCCCC-CCce--eecccccccCCCCCCCCCccCccccccccccccCCCCcccCCcEEEEEEE
Q 000301 325 SCWCLFRMSVLNQSPG-SNHM--HRDSYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSF 394 (1701)
Q Consensus 325 ~v~a~ftL~LLnQ~~g-~~~~--~r~~~~~F~~~~~~~~~~~~G~~kFI~~sdL~d~~~GYLvdDsliIe~~V 394 (1701)
..+.......+|+... .++. .+....+.... ....+.+++++.++.....+++.+|.+.+++..
T Consensus 225 ~~~~~~~~~~ld~l~~~~~~~~~k~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 291 (297)
T KOG1987|consen 225 LTYVIAAGFKLDWLEKKLNEVKEKKKKDLWYEIR------LQELEEELKSLKDKCSDLEGLLVKDKAEVEAES 291 (297)
T ss_pred HHHHHhccchHhHHHHHHHHHHHhhhHHHHHHHH------HHHHHHHHHhhhhhhhhHHHHHHhhhhhhhccc
Confidence 2233344445666421 1111 11000111110 011255677777766656678877777766554
No 55
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=2.1e-05 Score=102.74 Aligned_cols=159 Identities=16% Similarity=0.189 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000301 1437 RFAREKKELSEQMREVESQLEWLRS---ERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERL 1513 (1701)
Q Consensus 1437 rL~~ek~eLE~~l~ELE~rLe~l~~---E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~ekl 1513 (1701)
++++.++.+-..++.++.+++..+. +.+...++.+.++.+++.+|..|+..++.++....+...+++.+-..+.+++
T Consensus 402 k~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~ 481 (1293)
T KOG0996|consen 402 KREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEI 481 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 3333333333344444444432222 3333445555666666666666665555544333333344444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1514 KSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTL 1593 (1701)
Q Consensus 1514 k~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eL 1593 (1701)
..+++++.....++.+.+.+....+.++.-|...-.....++..++.........+.+....+.+++.++.....++.+.
T Consensus 482 ~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~ 561 (1293)
T KOG0996|consen 482 EKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEK 561 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 55555555555555555554444444444333333333333333333333333333333333444444444444444433
Q ss_pred HH
Q 000301 1594 EA 1595 (1701)
Q Consensus 1594 e~ 1595 (1701)
++
T Consensus 562 ~k 563 (1293)
T KOG0996|consen 562 EK 563 (1293)
T ss_pred HH
Confidence 33
No 56
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.79 E-value=3.8e-06 Score=109.26 Aligned_cols=193 Identities=18% Similarity=0.265 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---
Q 000301 1428 KSEMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVK--- 1504 (1701)
Q Consensus 1428 kaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~k--- 1504 (1701)
+..+..++..++.+.++|+.++.+|..... .....++.|+...++.++.-..+|++|.+++++++++-.+...
T Consensus 455 Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq----~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~ 530 (697)
T PF09726_consen 455 ERSLKSELSQLRQENEQLQNKLQNLVQARQ----QDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALA 530 (697)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccc
Confidence 334555666666666666666666665544 2223344444445555555555666666554433311100000
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1505 -EKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKL 1583 (1701)
Q Consensus 1505 -EK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL 1583 (1701)
......+--+.+...+.++|.++.+|+.|.+..||+++.++.++++++... .+-+.+...|-..|
T Consensus 531 ~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~--------------~e~~~~~e~L~~aL 596 (697)
T PF09726_consen 531 QAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE--------------KESEKDTEVLMSAL 596 (697)
T ss_pred cchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhhhhHHHHHHHH
Confidence 000000111223334455555555666665555555555555554443321 11223345555666
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhhhHHHhh--HHHHHHHHHHHHHHhhhhhhhhhhcC
Q 000301 1584 QACQQYIHTLEAQLQEEMSRHAPLYGAGLEALS--MKELETLARIHEEGLRQIHTLQQCKG 1642 (1701)
Q Consensus 1584 ~e~q~~I~eLe~~l~eE~e~h~~~~~~~Le~~~--~~e~e~L~~~~~~~~k~ir~lq~~~~ 1642 (1701)
..+|++-..||..|..|-.=- . .++-++- ++++|.++...-+-.+.|.||.+.+.
T Consensus 597 ~amqdk~~~LE~sLsaEtriK-l---dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 597 SAMQDKNQHLENSLSAETRIK-L---DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHhhhHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665532200 0 0111111 25556656666666677777777544
No 57
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.78 E-value=1.6e-05 Score=110.60 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1501 RVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGME 1580 (1701)
Q Consensus 1501 kL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE 1580 (1701)
++..+...+.+++..++.++..++..+..+..+...+.+.+.+++.++..+...+...+.++..++.++..++..+..++
T Consensus 825 ~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~ 904 (1163)
T COG1196 825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK 904 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555554444455555555555555555555555555555555544444
Q ss_pred HHHHHHHHHHHHH
Q 000301 1581 SKLQACQQYIHTL 1593 (1701)
Q Consensus 1581 ~eL~e~q~~I~eL 1593 (1701)
.+.+.....+..+
T Consensus 905 ~~~~~~~~~~~~l 917 (1163)
T COG1196 905 EEIEKLRERLEEL 917 (1163)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 58
>PRK11637 AmiB activator; Provisional
Probab=98.76 E-value=2e-05 Score=98.60 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1538 EEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTL 1593 (1701)
Q Consensus 1538 EE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eL 1593 (1701)
+..+++++.++.+++....+++.++.+|+.++.+.+..+..++.+..+.+..+.+|
T Consensus 183 ~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l 238 (428)
T PRK11637 183 AAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSEL 238 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444443333333333333333333333
No 59
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.76 E-value=7.7e-06 Score=94.44 Aligned_cols=91 Identities=18% Similarity=0.269 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1509 LAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQ 1588 (1701)
Q Consensus 1509 L~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~ 1588 (1701)
...++..++.++...++..+.+......+++.++.+...+..++........+...++..|..|+.++..++.+...+..
T Consensus 118 ~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~ 197 (237)
T PF00261_consen 118 VERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAER 197 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555555555555555555666666666666666666666655
Q ss_pred HHHHHHHHHHH
Q 000301 1589 YIHTLEAQLQE 1599 (1701)
Q Consensus 1589 ~I~eLe~~l~e 1599 (1701)
.+..|++.+..
T Consensus 198 ~v~~Le~~id~ 208 (237)
T PF00261_consen 198 RVKKLEKEIDR 208 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555544
No 60
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.75 E-value=2.9e-05 Score=101.60 Aligned_cols=94 Identities=18% Similarity=0.273 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1502 VVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEIC-QSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGME 1580 (1701)
Q Consensus 1502 L~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~-r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE 1580 (1701)
+..+...++.++...+..+.+...+...+++....+++.. +.+..++.+.+.++++++++..+++.++.+|..+.+.+.
T Consensus 349 ~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 349 LRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555554443 556666666666666666666666666666666655555
Q ss_pred HHHHHHHHHHHHHHH
Q 000301 1581 SKLQACQQYIHTLEA 1595 (1701)
Q Consensus 1581 ~eL~e~q~~I~eLe~ 1595 (1701)
.++.+.++....++.
T Consensus 429 ~~~~~~~ee~~~i~~ 443 (1074)
T KOG0250|consen 429 EKAKEEEEEKEHIEG 443 (1074)
T ss_pred HHHHHhHHHHHHHHH
Confidence 555554444444333
No 61
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.71 E-value=6.5e-06 Score=102.63 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=43.7
Q ss_pred CcccccchHHHHHHHHhhhccccchhH----HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000301 1338 SSRGVDLDLEILVILVCEEQEIIRPVL----SMLREVAELANVDRAALWHQLCASEDEIIRIRDERK 1400 (1701)
Q Consensus 1338 ~~~ev~~~l~vL~~l~~~~~~~VKPlL----q~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle 1400 (1701)
..+....|+++|..-+.-+.+-||-+- --+|..+...+++..+++..+..+..++..+++.++
T Consensus 64 qN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 64 QNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLE 130 (546)
T ss_pred HHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567778889999998888888777543 335556666666666667777777777666666444
No 62
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=6.2e-05 Score=106.01 Aligned_cols=14 Identities=14% Similarity=-0.090 Sum_probs=7.4
Q ss_pred hhhhHHHHHHHHHh
Q 000301 1280 DDFTCVLGLAETLA 1293 (1701)
Q Consensus 1280 ~~f~~~l~la~~l~ 1293 (1701)
++|+.+|.-++.-+
T Consensus 635 ~~~~~~L~~~~~~l 648 (1311)
T TIGR00606 635 QDEESDLERLKEEI 648 (1311)
T ss_pred hhHHHHHHHHHHHH
Confidence 45566665555443
No 63
>PRK03918 chromosome segregation protein; Provisional
Probab=98.68 E-value=3.2e-05 Score=105.04 Aligned_cols=47 Identities=15% Similarity=-0.019 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhccccchhHHHHHHHH-HHhHHHHHHHHHHHHhHHHHH
Q 000301 1346 LEILVILVCEEQEIIRPVLSMLREVA-ELANVDRAALWHQLCASEDEI 1392 (1701)
Q Consensus 1346 l~vL~~l~~~~~~~VKPlLq~lRqe~-E~~~~e~e~L~~klk~~e~el 1392 (1701)
++.|...+...|.+-.||.+--++++ .....+++.+..++..+..++
T Consensus 428 l~~L~~~~~~Cp~c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~~ 475 (880)
T PRK03918 428 IEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKE 475 (880)
T ss_pred HHHHHhcCCCCCCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445566655444443 333334444444444433333
No 64
>PRK03918 chromosome segregation protein; Provisional
Probab=98.68 E-value=0.00012 Score=99.62 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1572 CEAYIDGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1572 LE~~l~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
++..+..+..+..+.+..+.+|+..+
T Consensus 403 l~~~i~~l~~~~~~~~~~i~eL~~~l 428 (880)
T PRK03918 403 IEEEISKITARIGELKKEIKELKKAI 428 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 65
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.66 E-value=4.4e-05 Score=100.02 Aligned_cols=136 Identities=9% Similarity=0.159 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1501 RVVKEKNALAERLKSAEAARKRFDEELKRYATEN-VTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGM 1579 (1701)
Q Consensus 1501 kL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~-k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~l 1579 (1701)
.++.+....+..++++..+...++..+..+.++. +.+...+.+.++++..|+.+++.++.+..+|.+....+...+...
T Consensus 355 ~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~ 434 (1074)
T KOG0250|consen 355 DLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE 434 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444445555555555555555554444 344444455555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHhhHHHHHHHHHHHHHHhhhhhhhhhhcCCC
Q 000301 1580 ESKLQACQQYIHTLEAQLQEEMSRHAPLYGAGLEALSMKELETLARIHEEGLRQIHTLQQCKGSP 1644 (1701)
Q Consensus 1580 E~eL~e~q~~I~eLe~~l~eE~e~h~~~~~~~Le~~~~~e~e~L~~~~~~~~k~ir~lq~~~~~~ 1644 (1701)
+.+....+..|..++++++. +-+-|+.+.+-+-..+......-..-++++..++...
T Consensus 435 ~ee~~~i~~~i~~l~k~i~~--------~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~f 491 (1074)
T KOG0250|consen 435 EEEKEHIEGEILQLRKKIEN--------ISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRRF 491 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhcC
Confidence 55555555555555555533 1111333333333333333333344445555555553
No 66
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.65 E-value=3.4e-05 Score=99.58 Aligned_cols=50 Identities=8% Similarity=0.099 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1546 DEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEA 1595 (1701)
Q Consensus 1546 ~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~ 1595 (1701)
..+..+.++...++.++.+++....+++.++..++.++.+.+..++++++
T Consensus 351 ~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~k 400 (562)
T PHA02562 351 QSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444444444444433
No 67
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.64 E-value=0.00016 Score=87.93 Aligned_cols=80 Identities=11% Similarity=0.110 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1520 RKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1520 i~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~e 1599 (1701)
+..+...+..+......++.+.++++..+.+..++...+...+.+..+.+.+++.++..-+.++++++.+-..|+..+..
T Consensus 163 i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias 242 (420)
T COG4942 163 IDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIAS 242 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444444444444455555544455555555555555555556666666666666666666666666666644
No 68
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=8.5e-05 Score=97.24 Aligned_cols=184 Identities=16% Similarity=0.225 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHH
Q 000301 1430 EMRAEMDRFAREKKELSEQMREVESQLEWLRS---ERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKR-------DEL 1499 (1701)
Q Consensus 1430 Eleee~~rL~~ek~eLE~~l~ELE~rLe~l~~---E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kq-------eel 1499 (1701)
.+++.+.++...+..|++++++....+.+++. .....+++.+.|+..|+......+..+.+....-. +++
T Consensus 402 k~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~ 481 (1293)
T KOG0996|consen 402 KREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEI 481 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 34555666666666666666655555554444 23455667777777777766666666555332222 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1500 KRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGM 1579 (1701)
Q Consensus 1500 kkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~l 1579 (1701)
.+++++..-+..++..+..++.-.+.++.-|.......-....++++.+...++.+.+......+++..+.++..++...
T Consensus 482 ~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~ 561 (1293)
T KOG0996|consen 482 EKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEK 561 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44444444444444444444444444444444333222222233333333333333333333333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHhhHHHHHHHHHHHHH
Q 000301 1580 ESKLQACQQYIHTLEAQLQEEMSRHAPLYGAGLEALSMKELETLARIHEE 1629 (1701)
Q Consensus 1580 E~eL~e~q~~I~eLe~~l~eE~e~h~~~~~~~Le~~~~~e~e~L~~~~~~ 1629 (1701)
+.++..+......+..++ ..++++.+|+.+....
T Consensus 562 ~k~l~~~~~e~~~~~~~~----------------~~~rqrveE~ks~~~~ 595 (1293)
T KOG0996|consen 562 EKELPKLRKEERNLKSQL----------------NKLRQRVEEAKSSLSS 595 (1293)
T ss_pred HHhHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHh
Confidence 444444433333333333 2244666666664444
No 69
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.59 E-value=4.8e-05 Score=98.26 Aligned_cols=201 Identities=12% Similarity=0.185 Sum_probs=90.6
Q ss_pred cchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 000301 1360 IRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKSEM-------- 1431 (1701)
Q Consensus 1360 VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~elkaEl-------- 1431 (1701)
+|--++.+++++..+..+++.+..++...+..++.+++.....++.+..+++.+..+....+.++..++.++
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~ 251 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIE 251 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444455555555665556665555555555555555554444444444444444444444433333333322
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000301 1432 --RAEMDRFAREKKELSEQMREVESQLEWLRS------------ERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRD 1497 (1701)
Q Consensus 1432 --eee~~rL~~ek~eLE~~l~ELE~rLe~l~~------------E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqe 1497 (1701)
++.+..++.++..++..+..++..+...+. ....++..+.++++.++.++..++..+.+++...+
T Consensus 252 ~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~- 330 (562)
T PHA02562 252 DPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMD- 330 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 233444444444444444444444443321 01345556666666666666666666555443222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1498 ELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGE 1561 (1701)
Q Consensus 1498 elkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~ 1561 (1701)
++.++..+...++.++.+....+..+..+..+++.+...++.+..+++.++.++++++.++...
T Consensus 331 ~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 331 EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 2333333333444444443333333333333333333333333333333333333333333333
No 70
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=5e-05 Score=94.87 Aligned_cols=107 Identities=15% Similarity=0.181 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1465 DEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSL 1544 (1701)
Q Consensus 1465 e~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~L 1544 (1701)
.+++.+.+.+.+-++.|--+.++..+++ .+++.|...+..|..++...+-.+.....+++.+++.....-.++.++
T Consensus 416 ar~qem~~Qk~reqe~iv~~nak~~ql~----~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~ql 491 (1118)
T KOG1029|consen 416 ARRQEMLNQKNREQEWIVYLNAKKKQLQ----QELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQL 491 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444444444444433333322 345566666777777777777777777777777777666666677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1545 QDEVRRLTQTVGQTEGEKREKEEQVARCEAY 1575 (1701)
Q Consensus 1545 e~el~elee~i~~lek~k~~LE~~i~rLE~~ 1575 (1701)
+.+++++++++..+..++..+..++...+..
T Consensus 492 qarikE~q~kl~~l~~Ekq~l~~qlkq~q~a 522 (1118)
T KOG1029|consen 492 QARIKELQEKLQKLAPEKQELNHQLKQKQSA 522 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 8888888888888888888888887776655
No 71
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.57 E-value=0.00028 Score=84.68 Aligned_cols=33 Identities=21% Similarity=0.131 Sum_probs=22.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000301 1368 REVAELANVDRAALWHQLCASEDEIIRIRDERK 1400 (1701)
Q Consensus 1368 Rqe~E~~~~e~e~L~~klk~~e~ele~lrkEle 1400 (1701)
+++...++.+......+++.++++...|..++.
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~ 35 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIE 35 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 355666777777777777777776666666554
No 72
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=0.00014 Score=102.62 Aligned_cols=235 Identities=13% Similarity=0.156 Sum_probs=97.3
Q ss_pred cccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1358 EIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDR 1437 (1701)
Q Consensus 1358 ~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~elkaEleee~~r 1437 (1701)
..++--|+.++.+.+.+..+.+.+..++.+++.++..++.+...-.. -...+..|+.+|++....+.++ .+++..
T Consensus 832 ~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~-~l~~r~~le~~L~el~~el~~l----~~~~~~ 906 (1311)
T TIGR00606 832 QEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT-NLQRRQQFEEQLVELSTEVQSL----IREIKD 906 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 34555566666666666666666666666665555444333221111 2224444444443333332222 233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhh-HHHHHHHHHHHHHHHHHH
Q 000301 1438 FAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAET---QLSQLKSRK-RDELKRVVKEKNALAERL 1513 (1701)
Q Consensus 1438 L~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~---qLe~le~~k-qeelkkL~kEK~aL~ekl 1513 (1701)
+..++..+...+..++.++++++.+.+....+++.+...++..+..+.. .|....... ..++.+++.+...+...+
T Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~i 986 (1311)
T TIGR00606 907 AKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQL 986 (1311)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433333333334444444443333333322 222111100 012333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 000301 1514 KSAEAARKRFDEELKRYATENVTREEI----------------CQSLQDEVRRLTQTV-----GQTEGEKREKEEQVARC 1572 (1701)
Q Consensus 1514 k~lE~ei~~lEeel~kL~kE~k~lEE~----------------~r~Le~el~elee~i-----~~lek~k~~LE~~i~rL 1572 (1701)
..++.++..+..++..+.++....... +++++.++..+..++ ...+.++.++..++..+
T Consensus 987 e~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l 1066 (1311)
T TIGR00606 987 EECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLI 1066 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333332222222 222222222222222 22233444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1573 EAYIDGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1573 E~~l~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
......+.++....+.+|..|+..+
T Consensus 1067 ~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1067 KRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666666
No 73
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.57 E-value=0.00022 Score=89.37 Aligned_cols=125 Identities=16% Similarity=0.198 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1517 EAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEG----EKREKEEQVARCEAYIDGMESKLQACQQYIHT 1592 (1701)
Q Consensus 1517 E~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek----~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~e 1592 (1701)
++.+.+++.....|.+|+...|+..+.++++++.+++...+.-. ...=++...-++.+++.++.-+|-+.+.....
T Consensus 269 eE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~eg 348 (1265)
T KOG0976|consen 269 EEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEG 348 (1265)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344444445566667777777777788777777665433322 22224444555555555566666555555555
Q ss_pred HHHHHHHHHh-hccCch--hhhHHHhhHHHHHHHHHH---HHHHhhhhhhhhhhcC
Q 000301 1593 LEAQLQEEMS-RHAPLY--GAGLEALSMKELETLARI---HEEGLRQIHTLQQCKG 1642 (1701)
Q Consensus 1593 Le~~l~eE~e-~h~~~~--~~~Le~~~~~e~e~L~~~---~~~~~k~ir~lq~~~~ 1642 (1701)
+..++ .|+| .|+-.. .+.+-...+-.+++|+++ .++.+.||-++..+.-
T Consensus 349 fddk~-~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if 403 (1265)
T KOG0976|consen 349 FDDKL-NELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIF 403 (1265)
T ss_pred hhHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 54444 3355 343210 011222222344445544 4457778877765543
No 74
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.52 E-value=0.00044 Score=86.83 Aligned_cols=75 Identities=9% Similarity=0.088 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1523 FDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1523 lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
++.+..++.+++.++.-++.+....++.+-++..++++++..++....++++.++..+.+++.+....++++.|+
T Consensus 321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQi 395 (1265)
T KOG0976|consen 321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQI 395 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444444444455555555566666555555555555555444444444443333334333
No 75
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.51 E-value=0.00024 Score=99.25 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000301 1432 RAEMDRFAREKKELSEQMREVESQLEWLRSE 1462 (1701)
Q Consensus 1432 eee~~rL~~ek~eLE~~l~ELE~rLe~l~~E 1462 (1701)
++++..+..++.+++.++..+..+++..+.+
T Consensus 677 ~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~ 707 (1201)
T PF12128_consen 677 EERKEQIEEQLNELEEELKQLKQELEELLEE 707 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555544443
No 76
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=0.00028 Score=91.20 Aligned_cols=112 Identities=15% Similarity=0.321 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1440 REKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAA 1519 (1701)
Q Consensus 1440 ~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~e 1519 (1701)
.-....+..+..+|..+.....+++.++..+++|++.+.+++++-...++.-+ .+.+.++.|-..+...++..+.+
T Consensus 762 ~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~----~e~e~l~lE~e~l~~e~~~~k~~ 837 (1174)
T KOG0933|consen 762 RALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRE----NEYERLQLEHEELEKEISSLKQQ 837 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555666666666666666666665554433322 23334555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1520 RKRFDEELKRYATENVTREEICQSLQDEVRRLTQTV 1555 (1701)
Q Consensus 1520 i~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i 1555 (1701)
...++.++..+..+.-.++......+.++..+++++
T Consensus 838 l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el 873 (1174)
T KOG0933|consen 838 LEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAEL 873 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Confidence 555555544444444444444433333333333333
No 77
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.50 E-value=0.00065 Score=87.07 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcCCC
Q 000301 1618 KELETLARIHEEGLRQIHTLQQCKGSP 1644 (1701)
Q Consensus 1618 ~e~e~L~~~~~~~~k~ir~lq~~~~~~ 1644 (1701)
++.+.-...-+.++.+|+.|+....++
T Consensus 421 ke~eaaKasEa~Ala~ik~l~e~~~~~ 447 (522)
T PF05701_consen 421 KEAEAAKASEALALAEIKALSESESSS 447 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 666666777777999999998766544
No 78
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=0.00033 Score=90.20 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1432 RAEMDRFAREKKELSEQMREVESQLE 1457 (1701)
Q Consensus 1432 eee~~rL~~ek~eLE~~l~ELE~rLe 1457 (1701)
+++++++..++.+|+..+.-+....+
T Consensus 264 ~d~~~~~~~~i~ele~~l~~l~~eke 289 (1200)
T KOG0964|consen 264 EDESEDLKCEIKELENKLTNLREEKE 289 (1200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 79
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.50 E-value=0.00042 Score=89.45 Aligned_cols=193 Identities=20% Similarity=0.299 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHH
Q 000301 1375 NVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKSEM-------------------RAEM 1435 (1701)
Q Consensus 1375 ~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~elkaEl-------------------eee~ 1435 (1701)
+.++......++.--+.+...-.+|..++..+..++.....++.+++..+.+++.++ .+++
T Consensus 10 q~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~ 89 (617)
T PF15070_consen 10 QAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEA 89 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHH
Confidence 334443344444333333333333444555555555555555555555555555433 2333
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000301 1436 DRFAREKKELSEQMREV---ESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAER 1512 (1701)
Q Consensus 1436 ~rL~~ek~eLE~~l~EL---E~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~ek 1512 (1701)
..|..++..|+.++... ..+|..+..+.++++..++...++++++..+..+-++.++..+. .+.++....
T Consensus 90 ~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~-t~SRAlsQN------ 162 (617)
T PF15070_consen 90 EHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKA-TASRALSQN------ 162 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch-HHHHHHHhH------
Confidence 44444444444333321 12222333334444444444444444444443333333333222 222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1513 LKSAEAARKRFDEELKRYATENVTREE-------ICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAY 1575 (1701)
Q Consensus 1513 lk~lE~ei~~lEeel~kL~kE~k~lEE-------~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~ 1575 (1701)
+++..++.++++...++..++..+.. .+++|..++.++++++.++.......+..+..+...
T Consensus 163 -~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q 231 (617)
T PF15070_consen 163 -RELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQ 231 (617)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34445555555555555554433322 234555555555555555554444444444444333
No 80
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=0.00078 Score=83.66 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=13.5
Q ss_pred CchhhhhhhhhccccccchH
Q 000301 1097 PLAVTIDFIFKAASQCQHLP 1116 (1701)
Q Consensus 1097 ~l~~~i~f~~~~~~~~~~~~ 1116 (1701)
|..++.+||......-..+|
T Consensus 104 dF~~iFkfLY~~Ldp~y~f~ 123 (581)
T KOG0995|consen 104 DFIAIFKFLYGFLDPDYEFP 123 (581)
T ss_pred cHHHHHHHHHhccCCCcccc
Confidence 67777788777765544455
No 81
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.49 E-value=0.00053 Score=95.88 Aligned_cols=17 Identities=35% Similarity=0.194 Sum_probs=10.6
Q ss_pred HHHhhhhhhhhhhcCCC
Q 000301 1628 EEGLRQIHTLQQCKGSP 1644 (1701)
Q Consensus 1628 ~~~~k~ir~lq~~~~~~ 1644 (1701)
.++.-++.+++.++-..
T Consensus 521 ~~~~~~~~~l~~~L~p~ 537 (1201)
T PF12128_consen 521 EELRAQIAELQRQLDPQ 537 (1201)
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 33566677777777644
No 82
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.48 E-value=0.00032 Score=87.15 Aligned_cols=15 Identities=40% Similarity=0.415 Sum_probs=9.0
Q ss_pred HhhhhhhhhhhcCCC
Q 000301 1630 GLRQIHTLQQCKGSP 1644 (1701)
Q Consensus 1630 ~~k~ir~lq~~~~~~ 1644 (1701)
++|||..||+-++.-
T Consensus 642 LlRQIE~lQ~tl~~~ 656 (961)
T KOG4673|consen 642 LLRQIEALQETLSKA 656 (961)
T ss_pred HHHHHHHHHHHHhhh
Confidence 666666666655543
No 83
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.45 E-value=0.00013 Score=91.26 Aligned_cols=73 Identities=25% Similarity=0.260 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHhhHHHHHHHHHHHHHHhhhhhhhhh
Q 000301 1560 GEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQEEMSRHAPLYGAGLEALSMKELETLARIHEEGLRQIHTLQQ 1639 (1701)
Q Consensus 1560 k~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~eE~e~h~~~~~~~Le~~~~~e~e~L~~~~~~~~k~ir~lq~ 1639 (1701)
++...+...+..|.+.+..+|++...+.++|.+|+-++.+++..| |..+..++.++..+-++.+.++-|+|.
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~--------e~~L~~kd~~i~~mReec~~l~~Elq~ 367 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSF--------EQALNDKDAEIAKMREECQQLSVELQK 367 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhh--------hhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677777777888888888888888888887765555 555656666666666665555555554
Q ss_pred h
Q 000301 1640 C 1640 (1701)
Q Consensus 1640 ~ 1640 (1701)
-
T Consensus 368 L 368 (546)
T KOG0977|consen 368 L 368 (546)
T ss_pred h
Confidence 3
No 84
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.44 E-value=0.00016 Score=92.78 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhhhccccCCC
Q 000301 979 AELLGLIVNSLRALDGAVPQ 998 (1701)
Q Consensus 979 ~~l~~li~~~l~~ld~~~~~ 998 (1701)
||.=++|+.+|+-++.-||.
T Consensus 2 ee~d~ii~~~L~~~g~~~~~ 21 (594)
T PF05667_consen 2 EEADEIIIHSLRQIGCDIPE 21 (594)
T ss_pred cHHHHHHHHHHHHcCCcccC
Confidence 55667888888887777655
No 85
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.44 E-value=0.0001 Score=96.18 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=13.1
Q ss_pred cccchhHHHHHHHHHHhHHHHH
Q 000301 1358 EIIRPVLSMLREVAELANVDRA 1379 (1701)
Q Consensus 1358 ~~VKPlLq~lRqe~E~~~~e~e 1379 (1701)
.++|.=|+..|+.++.+..++.
T Consensus 428 kkLraeLq~~Rq~E~ELRsqis 449 (697)
T PF09726_consen 428 KKLRAELQSSRQSEQELRSQIS 449 (697)
T ss_pred HHHHHHHHhhhhhHHHHHHHHh
Confidence 4566666666666666555544
No 86
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=0.0029 Score=78.77 Aligned_cols=101 Identities=15% Similarity=0.220 Sum_probs=49.7
Q ss_pred cccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 000301 1358 EIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKSEM------ 1431 (1701)
Q Consensus 1358 ~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~elkaEl------ 1431 (1701)
++...=++++|++...++.+..+....+...+.+.....+ +++++..|+..-+++++.+.+...+|+..+
T Consensus 255 ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~----~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS 330 (581)
T KOG0995|consen 255 EKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEK----KLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGIS 330 (581)
T ss_pred hcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445555666666666666666555544444433332222 233333333333333333333333343333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000301 1432 RAEMDRFAREKKELSEQMREVESQLEWLRSE 1462 (1701)
Q Consensus 1432 eee~~rL~~ek~eLE~~l~ELE~rLe~l~~E 1462 (1701)
-+++.++..++.+|...+..++.+++.+..+
T Consensus 331 ~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~ 361 (581)
T KOG0995|consen 331 GEDVERMNLERNKLKRELNKIQSELDRLSKE 361 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356666666667777666666666655443
No 87
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.43 E-value=0.001 Score=86.48 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000301 1432 RAEMDRFAREKKELSEQMREVESQLEWLRS 1461 (1701)
Q Consensus 1432 eee~~rL~~ek~eLE~~l~ELE~rLe~l~~ 1461 (1701)
-++++.|..++++.-+.|.+++.-|.+.+.
T Consensus 1510 peqi~~L~~~I~e~v~sL~nVd~IL~~T~~ 1539 (1758)
T KOG0994|consen 1510 PEQIQQLTGEIQERVASLPNVDAILSRTKG 1539 (1758)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHhhhh
Confidence 346777777777777777766666664443
No 88
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.43 E-value=0.00042 Score=91.05 Aligned_cols=44 Identities=27% Similarity=0.425 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1541 CQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQ 1584 (1701)
Q Consensus 1541 ~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~ 1584 (1701)
..+.+.++..|..-+..++.++..++..+++|+..+.+....+.
T Consensus 564 ~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~ 607 (775)
T PF10174_consen 564 SEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLA 607 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchh
Confidence 34445555566666666666666666666666655444333333
No 89
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.42 E-value=0.00099 Score=86.25 Aligned_cols=55 Identities=22% Similarity=0.189 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1466 EIAKLTTEKKVLQDRLHDAETQLSQLKSRKR---DELKRVVKEKNALAERLKSAEAAR 1520 (1701)
Q Consensus 1466 ~~~kLq~EKk~LqerI~eLE~qLe~le~~kq---eelkkL~kEK~aL~eklk~lE~ei 1520 (1701)
+.-.+.+|++.|.-+++.+++.|.++...+. +..+.+..|+..+.+.++..+.-.
T Consensus 402 K~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~ 459 (1195)
T KOG4643|consen 402 KHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSL 459 (1195)
T ss_pred HHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445666667777777777777766544333 344556667766666666554443
No 90
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.42 E-value=0.00027 Score=93.10 Aligned_cols=70 Identities=26% Similarity=0.404 Sum_probs=47.8
Q ss_pred hHHHHHHhhccC-cCCCCCCCCCCCccc----ccCCCCCCCCccchhhhhhhccccchhhHHHHHHHhcCCc---hhHHH
Q 000301 1151 VAETILRDIDCD-DDFGDNCSTMPSGLF----LFGENGPTSDSLHVMDEQAFRATRHFSDIYILIEMLSIPC---IAVEA 1222 (1701)
Q Consensus 1151 ~~e~~l~~i~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~s~~~---~~~~~ 1222 (1701)
|+=-||+++..+ .++|..|-=-+-|+| ++|+..+-|+.+..--. +|.+- =++++.|. ...+|
T Consensus 243 ISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~-------KIm~h---k~~l~FP~~~~VSeea 312 (1317)
T KOG0612|consen 243 ISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYG-------KIMNH---KESLSFPDETDVSEEA 312 (1317)
T ss_pred cCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHH-------HHhch---hhhcCCCcccccCHHH
Confidence 778899999999 889998865555677 46888888877755433 23332 46778882 22566
Q ss_pred HHHHHHHH
Q 000301 1223 AQTFERAV 1230 (1701)
Q Consensus 1223 ~~~~~~~~ 1230 (1701)
.-++++-|
T Consensus 313 kdLI~~ll 320 (1317)
T KOG0612|consen 313 KDLIEALL 320 (1317)
T ss_pred HHHHHHHh
Confidence 66666544
No 91
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=0.0004 Score=89.86 Aligned_cols=112 Identities=18% Similarity=0.292 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1476 VLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTV 1555 (1701)
Q Consensus 1476 ~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i 1555 (1701)
+.++.+..+|..+.+....+..+++.++++...+.+++.+...+.+..+.+.+++.-|...++.+++..+..+..++.++
T Consensus 766 ~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~ 845 (1174)
T KOG0933|consen 766 KCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQI 845 (1174)
T ss_pred HHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544444445555566655555555555555555555555555554444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1556 GQTEGEKREKEEQVARCEAYIDGMESKLQACQ 1587 (1701)
Q Consensus 1556 ~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q 1587 (1701)
..+..+...++..+...+....++++++.++.
T Consensus 846 ~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k 877 (1174)
T KOG0933|consen 846 SSLKSELGNLEAKVDKVEKDVKKAQAELKDQK 877 (1174)
T ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Confidence 44444433333333333333333333333333
No 92
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.39 E-value=0.00047 Score=90.95 Aligned_cols=85 Identities=25% Similarity=0.354 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1501 RVVKEKNALAERLKSAEAARKRFDEELKRYATENVT-REE--ICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYID 1577 (1701)
Q Consensus 1501 kL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~-lEE--~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~ 1577 (1701)
.++.+...+++.++....++...++ +++.+.|... .|+ ...+++.+++.++.+++++..+...+ .+..-+++..
T Consensus 627 ~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~ 703 (1317)
T KOG0612|consen 627 ELKEEISSLEETLKAGKKELLKVEE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMK 703 (1317)
T ss_pred HHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHH
Confidence 3444444444444444444444444 3333322111 122 34455555555666665555555544 2222244455
Q ss_pred HHHHHHHHHHH
Q 000301 1578 GMESKLQACQQ 1588 (1701)
Q Consensus 1578 ~lE~eL~e~q~ 1588 (1701)
.++..+.+.+.
T Consensus 704 e~~~~lseek~ 714 (1317)
T KOG0612|consen 704 EIESKLSEEKS 714 (1317)
T ss_pred HHHHHhccccc
Confidence 55555554443
No 93
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.37 E-value=0.00077 Score=87.39 Aligned_cols=14 Identities=14% Similarity=0.022 Sum_probs=8.2
Q ss_pred HhhhhhhhhhhcCC
Q 000301 1630 GLRQIHTLQQCKGS 1643 (1701)
Q Consensus 1630 ~~k~ir~lq~~~~~ 1643 (1701)
+.+.|+.|..++..
T Consensus 453 ~~~~i~~l~~~L~~ 466 (569)
T PRK04778 453 VSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHhcc
Confidence 55556666665554
No 94
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.36 E-value=0.0029 Score=74.03 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=18.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1386 CASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEA 1422 (1701)
Q Consensus 1386 k~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~ 1422 (1701)
+....++...|.++..+...+..+++.|..+..+..+
T Consensus 19 k~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e 55 (294)
T COG1340 19 KEEIEELKEKRDELRKEASELAEKRDELNAKVRELRE 55 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555555566666555544433
No 95
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.35 E-value=0.001 Score=86.37 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=21.6
Q ss_pred eEEeecCCCccceEEEEEEeccccCCCceeecCcEEEcCeeEEEEEE
Q 000301 81 ESVAVDRRGEHSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLVY 127 (1701)
Q Consensus 81 ~~~~vdr~~~~~~~~tw~I~nfS~lk~~~~~Sp~F~vGG~~WrL~vy 127 (1701)
+.+++.-+-+.+=.|++.|--|-..+--.++=..=.-||..|++-=|
T Consensus 119 ~~vtIQLDLEAEFhFTHLImtFktfRPAAMliERS~DFGkTW~vYrY 165 (1758)
T KOG0994|consen 119 ENVTIQLDLEAEFHFTHLIMTFKTFRPAAMLIERSSDFGKTWHVYRY 165 (1758)
T ss_pred CcceEEeehhhheeeeeeeEeeccCCcceeeeeecccccccceeeee
Confidence 33444333333334666666665554322222222235777776554
No 96
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.33 E-value=0.002 Score=90.45 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHhhcCCchhH-HHHHHHHHHhh
Q 000301 1299 RVREFVKILYTILLKWYPDESYR-GRMLKRLVDRA 1332 (1701)
Q Consensus 1299 ~v~~f~~~~y~~~f~~~~~~~~~-~~~~~~lv~~~ 1332 (1701)
+-++|-++|.......|+.+|.+ .+=.+.|++.|
T Consensus 254 ~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEA 288 (1486)
T PRK04863 254 SDRDLFKHLITESTNYVAADYMRHANERRVHLEEA 288 (1486)
T ss_pred cHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHH
Confidence 34555555555556666666666 44456677776
No 97
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.33 E-value=0.0011 Score=85.86 Aligned_cols=188 Identities=15% Similarity=0.249 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHH---H
Q 000301 1364 LSMLREVAELANVDRAALWHQLCASEDEIIRIRDERK-------------------AEISNMVREKAVFSQKLAES---E 1421 (1701)
Q Consensus 1364 Lq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle-------------------~e~~~le~Ek~~L~eqLee~---E 1421 (1701)
..-|..++..+..+......++.+++..+..++..+. .++..|..++..|.++++.. .
T Consensus 31 ~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~n 110 (617)
T PF15070_consen 31 MQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENN 110 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666666666665554 22333444444444443321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HH
Q 000301 1422 AAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKR---DE 1498 (1701)
Q Consensus 1422 ~al~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kq---ee 1498 (1701)
+.+..+..+.++++..|+....+++.+..+...-|+.+..++. .+.+.-+.+++|.+++.+++...-.+-.++. ..
T Consensus 111 e~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~-t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~ 189 (617)
T PF15070_consen 111 EQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKA-TASRALSQNRELKEQLAELQDAFVKLTNENMELTSA 189 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch-HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence 1222222233333444443344433333333333333333322 2344455567788888888775555443332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1499 LKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLT 1552 (1701)
Q Consensus 1499 lkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~ele 1552 (1701)
++..+.-+..|..++.+++..+..+.+.++....|...+......+.+.++...
T Consensus 190 lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~ 243 (617)
T PF15070_consen 190 LQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYV 243 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334555556666666666655555555555555444444444444333
No 98
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.33 E-value=0.00088 Score=86.70 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=10.0
Q ss_pred Hhhhhhhhhh--hcC
Q 000301 1630 GLRQIHTLQQ--CKG 1642 (1701)
Q Consensus 1630 ~~k~ir~lq~--~~~ 1642 (1701)
++++|.-|-. |++
T Consensus 549 LlkqI~~Lk~t~qn~ 563 (1195)
T KOG4643|consen 549 LLKQIQSLKTTSQNG 563 (1195)
T ss_pred HHHHHHHHHHHhHHH
Confidence 8899988876 554
No 99
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.33 E-value=0.0013 Score=91.24 Aligned_cols=235 Identities=19% Similarity=0.230 Sum_probs=122.0
Q ss_pred ccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1359 IIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERK-------AEISNMVREKAVFSQKLAESEAAGNRLKSEM 1431 (1701)
Q Consensus 1359 ~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle-------~e~~~le~Ek~~L~eqLee~E~al~elkaEl 1431 (1701)
++..-+..++++..++......+.........+...++-.+. .......+.+..++.++.+++..+..++..+
T Consensus 742 ~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~kl 821 (1822)
T KOG4674|consen 742 KLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKL 821 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444444444444444333332221 2222233445556666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH------------
Q 000301 1432 RAEMDRFAREKKELSEQMREVESQLEWLRSERD---DEIAKLTTEKKVLQDRLHDAETQLSQLKSRKR------------ 1496 (1701)
Q Consensus 1432 eee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~E---e~~~kLq~EKk~LqerI~eLE~qLe~le~~kq------------ 1496 (1701)
+++...+..-...++..+..+..++..+..+.. ..+..++.++..|+.++.+|+..|...+.+..
T Consensus 822 q~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~ 901 (1822)
T KOG4674|consen 822 QEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDAT 901 (1822)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhh
Confidence 666666666666666666666666665444433 33444555555555555555555544332211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1497 ---DELKRVVKEKNALAERLKSAEAARKRFDEELKRYA----TENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQV 1569 (1701)
Q Consensus 1497 ---eelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~----kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i 1569 (1701)
+.+.+...+...+..+++....++.++.+...... ..+..+++-+..++.++..+..++..++.++..|+.++
T Consensus 902 ~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~ 981 (1822)
T KOG4674|consen 902 ILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEI 981 (1822)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444444556666666666666665544332 23334455555555666666666666666666666655
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHH
Q 000301 1570 ARCEAY----IDGMESKLQACQQYIHTL 1593 (1701)
Q Consensus 1570 ~rLE~~----l~~lE~eL~e~q~~I~eL 1593 (1701)
.++..+ ...++.++.+...++..+
T Consensus 982 ~~l~~e~~~~~k~~e~~~~~~~~e~~sl 1009 (1822)
T KOG4674|consen 982 ENLREELELSTKGKEDKLLDLSREISSL 1009 (1822)
T ss_pred HHHHHHHhccccchhhhHHHHHHHhHHH
Confidence 555544 224444444444444443
No 100
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.32 E-value=0.0056 Score=72.49 Aligned_cols=55 Identities=20% Similarity=0.388 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1434 EMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLK 1492 (1701)
Q Consensus 1434 e~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le 1492 (1701)
++.++.++-+++..++..+-.+-. ..+++.+.|.++.+.|+.-...++.+..+|.
T Consensus 138 ~lar~t~Q~q~lqtrl~~l~~qr~----ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~ 192 (499)
T COG4372 138 ELARLTKQAQDLQTRLKTLAEQRR----QLEAQAQSLQASQKQLQASATQLKSQVLDLK 192 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433332 3445566677777777766666665555544
No 101
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.31 E-value=0.00081 Score=87.18 Aligned_cols=10 Identities=20% Similarity=0.308 Sum_probs=5.6
Q ss_pred hhcccCCCCc
Q 000301 1249 AQRLNFNPGF 1258 (1701)
Q Consensus 1249 ~~~~~~~~~~ 1258 (1701)
...++++|-.
T Consensus 53 vk~l~l~Ges 62 (569)
T PRK04778 53 VKKLNLTGQS 62 (569)
T ss_pred HhcCCCCccc
Confidence 3556666643
No 102
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=98.30 E-value=0.0022 Score=75.39 Aligned_cols=96 Identities=14% Similarity=0.226 Sum_probs=47.3
Q ss_pred HHhhhccccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1352 LVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERK----AEISNMVREKAVFSQKLAESEAAGNRL 1427 (1701)
Q Consensus 1352 l~~~~~~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle----~e~~~le~Ek~~L~eqLee~E~al~el 1427 (1701)
-+..+...+|--|...|.+...+..+...+....-..+...+...+-+. .+++++..++..|..++++ +..-+
T Consensus 31 sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~---EEE~l 107 (310)
T PF09755_consen 31 SLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQ---EEEFL 107 (310)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 3344444455555555555555555555444444333333332222221 5666666666666666642 22334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1428 KSEMRAEMDRFAREKKELSEQMR 1450 (1701)
Q Consensus 1428 kaEleee~~rL~~ek~eLE~~l~ 1450 (1701)
-..+..++.+|..+|.+||..+.
T Consensus 108 tn~L~rkl~qLr~EK~~lE~~Le 130 (310)
T PF09755_consen 108 TNDLSRKLNQLRQEKVELENQLE 130 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666555544
No 103
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.30 E-value=0.0027 Score=79.31 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 000301 1402 EISNMVREKAVFSQKLAESEAAGNRLKSEM----RAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVL 1477 (1701)
Q Consensus 1402 e~~~le~Ek~~L~eqLee~E~al~elkaEl----eee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~L 1477 (1701)
.+.++....+.|+.+....+++..+++..+ ..+.+.+..+-..+-.++.+|...|...+...-.+-+.+..|+..|
T Consensus 538 ~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~L 617 (961)
T KOG4673|consen 538 YYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDL 617 (961)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666655555555555533 1223344444444555555555555432222234456677788888
Q ss_pred HHHHHHHHHHHHHH
Q 000301 1478 QDRLHDAETQLSQL 1491 (1701)
Q Consensus 1478 qerI~eLE~qLe~l 1491 (1701)
++|++++|..-+++
T Consensus 618 qrRlqaaE~R~eel 631 (961)
T KOG4673|consen 618 QRRLQAAERRCEEL 631 (961)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887665543
No 104
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.30 E-value=0.0018 Score=90.83 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=7.8
Q ss_pred HHHHhhhhhhhhhhcC
Q 000301 1627 HEEGLRQIHTLQQCKG 1642 (1701)
Q Consensus 1627 ~~~~~k~ir~lq~~~~ 1642 (1701)
+.++.+.+++...+.+
T Consensus 532 q~~~~~~~~~~~~~~~ 547 (1486)
T PRK04863 532 QQRAERLLAEFCKRLG 547 (1486)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3335555555554443
No 105
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=0.00072 Score=87.24 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1565 KEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1565 LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~e 1599 (1701)
+..++.++..-+......-+..|..+.++++.+.+
T Consensus 395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~ 429 (1200)
T KOG0964|consen 395 IRSEIEKLKRGINDTKEQENILQKEIEDLESELKE 429 (1200)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 55555666655555555555566666666655433
No 106
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.28 E-value=1.5e-07 Score=125.87 Aligned_cols=233 Identities=24% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHH
Q 000301 1364 LSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEA------------------AGN 1425 (1701)
Q Consensus 1364 Lq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~------------------al~ 1425 (1701)
|..|+.+.+.+.+......+..+.+++++..++++++......+..+..|..++.+.-. +..
T Consensus 76 Le~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~ 155 (859)
T PF01576_consen 76 LEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKS 155 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666777777888888888775544444444444444422222 111
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1426 RLKS---EMRAEMDRFAREKKELSEQMREVESQLEWLRSE----------RDDEIAKLTTEKKVLQDRLHDAETQLSQLK 1492 (1701)
Q Consensus 1426 elka---Eleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E----------~Ee~~~kLq~EKk~LqerI~eLE~qLe~le 1492 (1701)
.+.. ++..+++.+...+.+.|..++.+|.+|..++.. ......+|+.|+..|..++++++.++..+.
T Consensus 156 ~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~ 235 (859)
T PF01576_consen 156 QLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQ 235 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 223355566666666677777777776655442 224455666666666666666665555544
Q ss_pred HhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH-----------HHH---
Q 000301 1493 SRKR----------DELKRVVKEKNALAERLKSAEAARKRFDEE--------------LKRYA-----------TEN--- 1534 (1701)
Q Consensus 1493 ~~kq----------eelkkL~kEK~aL~eklk~lE~ei~~lEee--------------l~kL~-----------kE~--- 1534 (1701)
..+. ..+......|..+..+++.++.++..+.+. +.++. .+.
T Consensus 236 r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~ 315 (859)
T PF01576_consen 236 REKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQR 315 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence 3222 122223444555555555555543333222 22222 221
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1535 -VTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQ 1596 (1701)
Q Consensus 1535 -k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~ 1596 (1701)
..+|+.++++..++.++++.+..+...+..+++...+|..++.++..++...+.....|+++
T Consensus 316 ~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKK 378 (859)
T PF01576_consen 316 TEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKK 378 (859)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13477789999999999999999999999999999999999999999999999988888774
No 107
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.28 E-value=0.0035 Score=82.70 Aligned_cols=141 Identities=23% Similarity=0.255 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1499 LKRVVKEKNALAERLKSAEAARK-RFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYID 1577 (1701)
Q Consensus 1499 lkkL~kEK~aL~eklk~lE~ei~-~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~ 1577 (1701)
+.+...++..+..+++.....-. ...++++.+.++.+.+...+..|+.++.+.+-.+..+..+..++-....+.+..+.
T Consensus 438 lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~ 517 (775)
T PF10174_consen 438 LEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIE 517 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHH
Confidence 33444455555555444322211 22244555555555556666666666666665565555555555555555566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhhccCchhhhHHHhh----------HHHHHHHHHHHHH-------Hhhhhhhh
Q 000301 1578 GMESKLQACQQYIHTLEAQLQE---EMSRHAPLYGAGLEALS----------MKELETLARIHEE-------GLRQIHTL 1637 (1701)
Q Consensus 1578 ~lE~eL~e~q~~I~eLe~~l~e---E~e~h~~~~~~~Le~~~----------~~e~e~L~~~~~~-------~~k~ir~l 1637 (1701)
.++..++...+.+..|++++.. ..+.- .-...||... +.|.++|..+.-. .-++|.+|
T Consensus 518 ~l~I~lEk~rek~~kl~~ql~k~~~~~e~~--~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~L 595 (775)
T PF10174_consen 518 RLEIELEKKREKHEKLEKQLEKLRANAELR--DRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGEL 595 (775)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCHhhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 7777777777777777666643 01100 0012233322 2566666655444 55778888
Q ss_pred hhhc
Q 000301 1638 QQCK 1641 (1701)
Q Consensus 1638 q~~~ 1641 (1701)
+..+
T Consensus 596 ekeL 599 (775)
T PF10174_consen 596 EKEL 599 (775)
T ss_pred HHHH
Confidence 8764
No 108
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.28 E-value=0.00098 Score=87.84 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1403 ISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEW 1458 (1701)
Q Consensus 1403 ~~~le~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~ 1458 (1701)
+..+..+++.++.+++++++.+...-....+++++|+.++.+++.++.+.+.++..
T Consensus 232 i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~ 287 (650)
T TIGR03185 232 IAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRE 287 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333433333333322222233445566666666666666666666553
No 109
>PRK01156 chromosome segregation protein; Provisional
Probab=98.27 E-value=0.0022 Score=87.61 Aligned_cols=33 Identities=9% Similarity=0.268 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1564 EKEEQVARCEAYIDGMESKLQACQQYIHTLEAQ 1596 (1701)
Q Consensus 1564 ~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~ 1596 (1701)
++...+..++.++..+..+..+....+.+|.+.
T Consensus 413 e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~ 445 (895)
T PRK01156 413 EINVKLQDISSKVSSLNQRIRALRENLDELSRN 445 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555443
No 110
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.27 E-value=0.0036 Score=80.43 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1432 RAEMDRFAREKKELSEQMREVESQL 1456 (1701)
Q Consensus 1432 eee~~rL~~ek~eLE~~l~ELE~rL 1456 (1701)
+..+..+..++.+.+.++..|..++
T Consensus 210 ~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 210 EQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 111
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.24 E-value=0.0028 Score=88.02 Aligned_cols=164 Identities=23% Similarity=0.290 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 000301 1401 AEISNMVREKAVFSQKLAESEAAGNRLKSEM---RAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVL 1477 (1701)
Q Consensus 1401 ~e~~~le~Ek~~L~eqLee~E~al~elkaEl---eee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~L 1477 (1701)
.+...+..+++.|..++.+......++..+. ......|.+++.++..+-+.+...+++ ...+++.+..+++.+
T Consensus 73 ~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~----~~~ele~l~~~n~~l 148 (1822)
T KOG4674|consen 73 RQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLER----QKAELEALESENKDL 148 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4555555556666666654444444443332 335666666666666666666666653 334555556666666
Q ss_pred HHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 000301 1478 QDRLHDAETQLSQLKSRKR----------DELKRVVKEKNALAERLKSAEAARKRFDEELKRYATE----NVTREEICQS 1543 (1701)
Q Consensus 1478 qerI~eLE~qLe~le~~kq----------eelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE----~k~lEE~~r~ 1543 (1701)
.+++..+-..+.+++.+.+ -...++..++..+.....-+..+....-+++..+.++ ...+++.+..
T Consensus 149 ~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~ 228 (1822)
T KOG4674|consen 149 NDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSD 228 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 6666655555555544433 2345677777777777777777766666666666655 4444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1544 LQDEVRRLTQTVGQTEGEKREKEEQ 1568 (1701)
Q Consensus 1544 Le~el~elee~i~~lek~k~~LE~~ 1568 (1701)
+...+.++++++..+..+..++...
T Consensus 229 ~~~~~~~~q~~~~~l~q~~~eLs~~ 253 (1822)
T KOG4674|consen 229 LKESLAELQEKNKSLKQQNEELSKK 253 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444444444433
No 112
>PRK01156 chromosome segregation protein; Provisional
Probab=98.24 E-value=0.0041 Score=85.10 Aligned_cols=8 Identities=13% Similarity=0.019 Sum_probs=4.5
Q ss_pred cchhhHHH
Q 000301 1201 RHFSDIYI 1208 (1701)
Q Consensus 1201 ~~~~d~~~ 1208 (1701)
..++|...
T Consensus 37 SsileAI~ 44 (895)
T PRK01156 37 SSIVDAIR 44 (895)
T ss_pred HHHHHHHH
Confidence 45666554
No 113
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=98.24 E-value=0.0052 Score=79.25 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1501 RVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGME 1580 (1701)
Q Consensus 1501 kL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE 1580 (1701)
.+++++..|...+.++.++..+.+...+...+....++.++..+..+++.++.++.++.......-.++..+..+++.+-
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~ 542 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLA 542 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34444445555555555544444444444444444445555556666666666666655555555555555555544443
Q ss_pred HH
Q 000301 1581 SK 1582 (1701)
Q Consensus 1581 ~e 1582 (1701)
++
T Consensus 543 ~~ 544 (980)
T KOG0980|consen 543 AE 544 (980)
T ss_pred HH
Confidence 33
No 114
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.22 E-value=0.0024 Score=80.09 Aligned_cols=29 Identities=34% Similarity=0.516 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1465 DEIAKLTTEKKVLQDRLHDAETQLSQLKS 1493 (1701)
Q Consensus 1465 e~~~kLq~EKk~LqerI~eLE~qLe~le~ 1493 (1701)
++...|.++...++++++.++..+..++.
T Consensus 182 e~e~~L~~~~~~~~~q~~~le~ki~~lq~ 210 (629)
T KOG0963|consen 182 EREAGLKDEEQNLQEQLEELEKKISSLQS 210 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666555543
No 115
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.20 E-value=0.0023 Score=78.12 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1525 EELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYID 1577 (1701)
Q Consensus 1525 eel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~ 1577 (1701)
++..++..-........+++..+++..+.+++++......|+..|.+++.+..
T Consensus 196 ~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 196 AQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33334443333345555667777777777888888887888888888876655
No 116
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.19 E-value=0.0083 Score=70.31 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1544 LQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQ 1596 (1701)
Q Consensus 1544 Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~ 1596 (1701)
+-.++.++..++..+-....++...+..+...++.++.++.+....|..|+..
T Consensus 198 ~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~ 250 (294)
T COG1340 198 LFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAK 250 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444444444444444443
No 117
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=98.19 E-value=0.0031 Score=81.19 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1433 AEMDRFAREKKELSEQMREVESQL 1456 (1701)
Q Consensus 1433 ee~~rL~~ek~eLE~~l~ELE~rL 1456 (1701)
++.++|+.+...+.+...+++.-.
T Consensus 386 ~e~eqLr~elaql~a~r~q~eka~ 409 (980)
T KOG0980|consen 386 EEQEQLRNELAQLLASRTQLEKAQ 409 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554443
No 118
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0012 Score=79.49 Aligned_cols=14 Identities=14% Similarity=0.003 Sum_probs=10.7
Q ss_pred HhhhhhhhhhhcCC
Q 000301 1630 GLRQIHTLQQCKGS 1643 (1701)
Q Consensus 1630 ~~k~ir~lq~~~~~ 1643 (1701)
.-|+||+|+.|++.
T Consensus 474 ~~revrdlE~qI~~ 487 (521)
T KOG1937|consen 474 LKREVRDLESQIYV 487 (521)
T ss_pred HHHHHHHHHHHHhH
Confidence 66788888888763
No 119
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.12 E-value=0.0058 Score=79.19 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=31.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1381 LWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKS--------EMRAEMDRFAREKKELSEQMREV 1452 (1701)
Q Consensus 1381 L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~elka--------Eleee~~rL~~ek~eLE~~l~EL 1452 (1701)
....+.++.....++++.+-........-...|+++|.+++....+-.. ++++.+..+..+...|+..+.++
T Consensus 134 nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~I 213 (560)
T PF06160_consen 134 NREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDI 213 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444455554444444444444444444444443333222 33334444444444444444433
No 120
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=98.11 E-value=0.014 Score=68.82 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH
Q 000301 1361 RPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRD 1397 (1701)
Q Consensus 1361 KPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrk 1397 (1701)
++.+..++++...+..+......+.+.++.++..++.
T Consensus 26 ~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~ 62 (310)
T PF09755_consen 26 RKRIESLQQENRVLKRELETEKARCKHLQEENRALRE 62 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555455555555555555554
No 121
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.11 E-value=0.028 Score=70.98 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1430 EMRAEMDRFAREKKELSEQMREVESQLE 1457 (1701)
Q Consensus 1430 Eleee~~rL~~ek~eLE~~l~ELE~rLe 1457 (1701)
.+.++...++..+..++..+..++..++
T Consensus 186 ~L~~~~~~~~~q~~~le~ki~~lq~a~~ 213 (629)
T KOG0963|consen 186 GLKDEEQNLQEQLEELEKKISSLQSAIE 213 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555544444
No 122
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.11 E-value=0.0008 Score=77.05 Aligned_cols=85 Identities=24% Similarity=0.374 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1462 ERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEIC 1541 (1701)
Q Consensus 1462 E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~ 1541 (1701)
+.+.+..+++.+++++.+++..++.++.... .+.++..|+.|...+.+++.+++.++..+.++.+++.++...+.+++
T Consensus 56 ~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~--~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 56 DLENQVSQLESEIQEIRERIKRAEEKLSAVK--DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666666653322 12356667777777777777777766666666666666555554444
Q ss_pred HHHHHHH
Q 000301 1542 QSLQDEV 1548 (1701)
Q Consensus 1542 r~Le~el 1548 (1701)
..++..+
T Consensus 134 ~~~e~~~ 140 (239)
T COG1579 134 ERLEKNL 140 (239)
T ss_pred HHHHHHH
Confidence 4444433
No 123
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.08 E-value=0.026 Score=67.12 Aligned_cols=38 Identities=29% Similarity=0.271 Sum_probs=20.0
Q ss_pred ccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Q 000301 1359 IIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIR 1396 (1701)
Q Consensus 1359 ~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lr 1396 (1701)
-++|-|.++|.+...+..+.+.++-.......|+...+
T Consensus 78 di~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r 115 (499)
T COG4372 78 DIRPQLRALRTELGTAQGEKRAAETEREAARSELQKAR 115 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655544443333333333333
No 124
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0024 Score=81.46 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=44.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH----HHHH
Q 000301 1365 SMLREVAELANVDRAALWHQLCASEDEIIRIRDERK---AEISNMVREKAVFSQKLAESEAAGNRLKS--EM----RAEM 1435 (1701)
Q Consensus 1365 q~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle---~e~~~le~Ek~~L~eqLee~E~al~elka--El----eee~ 1435 (1701)
+-.+..+-.+..+++.+.+..++.+.+.+++..+++ .++.++..+.+.|..++.-...-..++-. |+ .+++
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel 739 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEEL 739 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHH
Confidence 334455555555555555666666555555555554 34555555555555555322221111111 11 3345
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000301 1436 DRFAREKKELSEQMREVESQL 1456 (1701)
Q Consensus 1436 ~rL~~ek~eLE~~l~ELE~rL 1456 (1701)
.++..+.++++.....+.++|
T Consensus 740 ~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 740 NAALSENKKLENDQELLTKEL 760 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554444444444
No 125
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.06 E-value=0.063 Score=68.19 Aligned_cols=281 Identities=19% Similarity=0.231 Sum_probs=121.7
Q ss_pred HHHHHhhhccccchh---HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 000301 1349 LVILVCEEQEIIRPV---LSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKA---VFSQKLAESEA 1422 (1701)
Q Consensus 1349 L~~l~~~~~~~VKPl---Lq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~---~L~eqLee~E~ 1422 (1701)
|..|+..|+.+++-+ |+.+-.+...-..+++.....-...+-+++.+++.+.... ++..++. .+.+.++..++
T Consensus 361 L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~q-kll~ekk~~eki~E~lq~~eq 439 (786)
T PF05483_consen 361 LKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQ-KLLDEKKQFEKIAEELQGTEQ 439 (786)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 778887777655433 3333333333333444333333444445666666665333 1222222 23333333333
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh--h-hhHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000301 1423 AGNRLKSEMRAEMDRFA-------REKKELSEQMREVESQLEWLR--S-ERDDEIAKLTTEKKVLQDRLHDAETQLS--- 1489 (1701)
Q Consensus 1423 al~elkaEleee~~rL~-------~ek~eLE~~l~ELE~rLe~l~--~-E~Ee~~~kLq~EKk~LqerI~eLE~qLe--- 1489 (1701)
.+..+....+.++..|. ..-+.--.++.++..+|+.-+ . |+.....+|+-|++.+.++..+.-..+.
T Consensus 440 el~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~q 519 (786)
T PF05483_consen 440 ELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQ 519 (786)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 33333222222222222 222233334444444444211 1 2334455666666666665554432222
Q ss_pred ----HHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHH
Q 000301 1490 ----QLKSRKR---DELKRVVKEKNALAERLKSAEAARKRFDEELK------------------RYATENVTREEICQSL 1544 (1701)
Q Consensus 1490 ----~le~~kq---eelkkL~kEK~aL~eklk~lE~ei~~lEeel~------------------kL~kE~k~lEE~~r~L 1544 (1701)
.-+.... .+++.|+.....++..+..+..++....++++ +..+..+.++..+..+
T Consensus 520 edi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~L 599 (786)
T PF05483_consen 520 EDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNL 599 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1110000 13444555555555555544444433333332 1222222233333233
Q ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHhhH
Q 000301 1545 QDEVR-------RLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQEEMSRHAPLYGAGLEALSM 1617 (1701)
Q Consensus 1545 e~el~-------elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~eE~e~h~~~~~~~Le~~~~ 1617 (1701)
+.++. +++.+.+.+.+....-.++...++..+.+++.+++.++....+.-..++.+++.-.- +++.+.
T Consensus 600 rKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~-----~e~~L~ 674 (786)
T PF05483_consen 600 RKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSI-----SEEELL 674 (786)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh-----hHHHHH
Confidence 33222 233333333333333344444555555666666666665555555555555553322 456666
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 000301 1618 KELETLARIHEEGLRQIH 1635 (1701)
Q Consensus 1618 ~e~e~L~~~~~~~~k~ir 1635 (1701)
.+.+.+..+-..|.|.=+
T Consensus 675 ~EveK~k~~a~EAvK~q~ 692 (786)
T PF05483_consen 675 GEVEKAKLTADEAVKLQE 692 (786)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 666666666555544333
No 126
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.011 Score=72.73 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1476 VLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTV 1555 (1701)
Q Consensus 1476 ~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i 1555 (1701)
.+-.+|-+++..|.+++. ++...+.|...+.....++.+.....+.+.-|++.|.+....+-.++-.+..+++++.
T Consensus 104 ~yl~kI~eleneLKq~r~----el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEEN 179 (772)
T KOG0999|consen 104 YYLQKILELENELKQLRQ----ELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEEN 179 (772)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555444322 2334444444444444444444445555555555555555555455555556666655
Q ss_pred HHHHHHHHHHHH
Q 000301 1556 GQTEGEKREKEE 1567 (1701)
Q Consensus 1556 ~~lek~k~~LE~ 1567 (1701)
..+++....|+.
T Consensus 180 IsLQKqVs~LR~ 191 (772)
T KOG0999|consen 180 ISLQKQVSNLRQ 191 (772)
T ss_pred chHHHHHHHHhh
Confidence 555555544433
No 127
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.06 E-value=0.0098 Score=76.90 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=10.9
Q ss_pred HhhhhhhhhhhcC
Q 000301 1630 GLRQIHTLQQCKG 1642 (1701)
Q Consensus 1630 ~~k~ir~lq~~~~ 1642 (1701)
..|.||+|+.|+.
T Consensus 576 ~~rEirdLe~qI~ 588 (594)
T PF05667_consen 576 ISREIRDLEEQID 588 (594)
T ss_pred HHHHHHHHHHHHH
Confidence 7889999998875
No 128
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.02 E-value=0.00094 Score=76.49 Aligned_cols=108 Identities=20% Similarity=0.358 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 000301 1402 EISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRL 1481 (1701)
Q Consensus 1402 e~~~le~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI 1481 (1701)
.+.++..+++.+...+.+++.++. +++.++.+++.++++++.++..++..+.. ..-+.+...|+.|...+++++
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e----~le~qv~~~e~ei~~~r~r~~~~e~kl~~--v~~~~e~~aL~~E~~~ak~r~ 105 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELE----DLENQVSQLESEIQEIRERIKRAEEKLSA--VKDERELRALNIEIQIAKERI 105 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433333322 22334444445555555555555544421 112344555666666666666
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1482 HDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAA 1519 (1701)
Q Consensus 1482 ~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~e 1519 (1701)
..++.+|.++..+. +++++++..+..++..++..
T Consensus 106 ~~le~el~~l~~~~----~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 106 NSLEDELAELMEEI----EKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 66666655554322 24455555555554444444
No 129
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.99 E-value=0.016 Score=76.66 Aligned_cols=61 Identities=21% Similarity=0.359 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000301 1401 AEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRS 1461 (1701)
Q Consensus 1401 ~e~~~le~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~ 1461 (1701)
.+.+.+.+++..++.+++++++.+.+++.++...-..+..++++++.++.+++.++.+.+.
T Consensus 223 ~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~ 283 (650)
T TIGR03185 223 EKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRA 283 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555666666655555554433
No 130
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.96 E-value=0.055 Score=63.30 Aligned_cols=174 Identities=20% Similarity=0.338 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh-------hHHHHHHH
Q 000301 1401 AEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQM---REVESQLEWLRSE-------RDDEIAKL 1470 (1701)
Q Consensus 1401 ~e~~~le~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ek~eLE~~l---~ELE~rLe~l~~E-------~Ee~~~kL 1470 (1701)
.++..|.+|-..|.-+|+.-.+....++.|++.=+.||++.+.+.+... +++|-.+.+.+.| ..-.+..+
T Consensus 63 ~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~l 142 (305)
T PF14915_consen 63 GQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNL 142 (305)
T ss_pred hhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhH
Confidence 3444455555555555544444455555566655666666665554422 1333333222221 22335566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1471 TTEKKVLQDRLHDAETQLSQLKSRKR---D-------ELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEI 1540 (1701)
Q Consensus 1471 q~EKk~LqerI~eLE~qLe~le~~kq---e-------elkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~ 1540 (1701)
.....-|.+++..++..+..|+.+-. + -+..++.+..-.+.++++++.....-++.+.+.......+|++
T Consensus 143 kd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eER 222 (305)
T PF14915_consen 143 KDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEER 222 (305)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777776655322 1 1223444555555555555555555555566666555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1541 CQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEA 1574 (1701)
Q Consensus 1541 ~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~ 1574 (1701)
+.+++.+-.-|++++..+.+.....++.+-.++.
T Consensus 223 L~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~ 256 (305)
T PF14915_consen 223 LSQLQSENMLLRQQLDDAHNKADNKEKTVINIQD 256 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 6666666666666555555554444444444433
No 131
>PRK09039 hypothetical protein; Validated
Probab=97.93 E-value=0.0012 Score=80.46 Aligned_cols=80 Identities=20% Similarity=0.181 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHhhHHHH
Q 000301 1541 CQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQEEMSRHAPLYGAGLEALSMKEL 1620 (1701)
Q Consensus 1541 ~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~eE~e~h~~~~~~~Le~~~~~e~ 1620 (1701)
+...+....+..-++..++.++..|+++++.+++.++.++.+..+.+.+|++|++.+ +..++++.
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L---------------~~a~~~~~ 189 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL---------------NVALAQRV 189 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 333333444444455555555555666666666666666666666666666666655 44555556
Q ss_pred HHHHHHHHHHhhhhh
Q 000301 1621 ETLARIHEEGLRQIH 1635 (1701)
Q Consensus 1621 e~L~~~~~~~~k~ir 1635 (1701)
.+|......-...+|
T Consensus 190 ~~l~~~~~~~~~~l~ 204 (343)
T PRK09039 190 QELNRYRSEFFGRLR 204 (343)
T ss_pred HHHHHhHHHHHHHHH
Confidence 666666555444444
No 132
>PRK11281 hypothetical protein; Provisional
Probab=97.93 E-value=0.0054 Score=84.02 Aligned_cols=86 Identities=13% Similarity=0.141 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHH
Q 000301 1404 SNMVREKAVFSQKLAESEAAGNRLKSEM---RAEMDRFAREKKELSEQMREVESQLEWLRSE----RDDEIAKLTTEKKV 1476 (1701)
Q Consensus 1404 ~~le~Ek~~L~eqLee~E~al~elkaEl---eee~~rL~~ek~eLE~~l~ELE~rLe~l~~E----~Ee~~~kLq~EKk~ 1476 (1701)
.++++...+++.++++.++++.+..+++ +.+-+|.+..+.+...++.+++.++...... .+.+...++.|...
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~ 203 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQAL 203 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHH
Confidence 3355555555555555555444444433 3344445555555555666666665532211 23556666777666
Q ss_pred HHHHHHHHHHHHH
Q 000301 1477 LQDRLHDAETQLS 1489 (1701)
Q Consensus 1477 LqerI~eLE~qLe 1489 (1701)
++.+++-.+..+.
T Consensus 204 l~~~~~~~~~~l~ 216 (1113)
T PRK11281 204 LNAQNDLQRKSLE 216 (1113)
T ss_pred HHHHHHHHHHHHh
Confidence 6666555554433
No 133
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0099 Score=71.89 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000301 1432 RAEMDRFAREKKELSEQMREVESQLEWLRS 1461 (1701)
Q Consensus 1432 eee~~rL~~ek~eLE~~l~ELE~rLe~l~~ 1461 (1701)
++-+++|...+.++..++.++..+.+..+.
T Consensus 292 eayLaKL~~~l~~~~~~~~~ltqqwed~R~ 321 (521)
T KOG1937|consen 292 EAYLAKLMGKLAELNKQMEELTQQWEDTRQ 321 (521)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666666666666666666666654433
No 134
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.90 E-value=0.028 Score=69.90 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1505 EKNALAERLKSAEAARKRFDEELKRYAT 1532 (1701)
Q Consensus 1505 EK~aL~eklk~lE~ei~~lEeel~kL~k 1532 (1701)
-...+...+.++.+....+.+++++++.
T Consensus 310 ~~~~l~~~l~k~ke~n~~L~~Eie~V~~ 337 (570)
T COG4477 310 NLPILPDYLEKAKENNEHLKEEIERVKE 337 (570)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555556666655553
No 135
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.90 E-value=0.027 Score=68.35 Aligned_cols=13 Identities=15% Similarity=0.536 Sum_probs=9.2
Q ss_pred Cchhhhhhhhhcc
Q 000301 1097 PLAVTIDFIFKAA 1109 (1701)
Q Consensus 1097 ~l~~~i~f~~~~~ 1109 (1701)
|-|+.|+|++.-.
T Consensus 123 d~pis~k~l~~PS 135 (622)
T COG5185 123 DIPISIKFLKQPS 135 (622)
T ss_pred CcchhHHHhcCCc
Confidence 4488888877643
No 136
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.88 E-value=0.051 Score=69.47 Aligned_cols=172 Identities=15% Similarity=0.150 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 000301 1469 KLTTEKKVLQDRLHDAETQLSQLKSRKR---DELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTR---EEICQ 1542 (1701)
Q Consensus 1469 kLq~EKk~LqerI~eLE~qLe~le~~kq---eelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~l---EE~~r 1542 (1701)
..+.+...|..+.++|+..|..++..+. .++...+.+.+.|++.+.+...++...-..+..+++-.-.+ +....
T Consensus 159 aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~ 238 (739)
T PF07111_consen 159 AHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQ 238 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccH
Confidence 3444455555555555555555554433 34556777888888888888777776666666666543222 22334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H----HHHHHHHhh-ccCchhh
Q 000301 1543 SLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTL-------E----AQLQEEMSR-HAPLYGA 1610 (1701)
Q Consensus 1543 ~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eL-------e----~~l~eE~e~-h~~~~~~ 1610 (1701)
..+.+..++.+.+..+++++..|..+..=|..++..+..=|.--.+.+..- + ++.+.=+.+ .-.+|.
T Consensus 239 ~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFa- 317 (739)
T PF07111_consen 239 AWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFA- 317 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHH-
Confidence 556667777888888888877777777766666555443222111111000 0 000000000 001122
Q ss_pred hHHHhhHHHHHHHHHHHHHHhhhhhhhhhhcC
Q 000301 1611 GLEALSMKELETLARIHEEGLRQIHTLQQCKG 1642 (1701)
Q Consensus 1611 ~Le~~~~~e~e~L~~~~~~~~k~ir~lq~~~~ 1642 (1701)
|-.+++-.+-+++....++.++|.+||.+..
T Consensus 318 -LmVQLkaQeleh~~~~~qL~~qVAsLQeev~ 348 (739)
T PF07111_consen 318 -LMVQLKAQELEHRDSVKQLRGQVASLQEEVA 348 (739)
T ss_pred -HHHHhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4556666666777777778888888876653
No 137
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.88 E-value=0.086 Score=72.48 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=23.5
Q ss_pred cccchhhHHHHHHHhcCCchhHHHHHHHHHHHhcCcch
Q 000301 1199 ATRHFSDIYILIEMLSIPCIAVEAAQTFERAVARGTIV 1236 (1701)
Q Consensus 1199 ~~~~~~d~~~l~~~~s~~~~~~~~~~~~~~~~~~g~~~ 1236 (1701)
|...++|...+-.--++|... .......+..|.-+
T Consensus 37 GKSSIldAI~~ALyG~~~~~~---~~~~~~~i~~g~~~ 71 (908)
T COG0419 37 GKSSILDAITFALYGKTPRLG---AFSLDDLIRAGEKS 71 (908)
T ss_pred cHHHHHHHHHHHHcCCCCCcc---chhhhHHHhcCCcc
Confidence 446789988888877777554 44555666666655
No 138
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.87 E-value=3e-06 Score=113.51 Aligned_cols=261 Identities=21% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 000301 1369 EVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKSEMRA----EMDRFAREKKE 1444 (1701)
Q Consensus 1369 qe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~elkaElee----e~~rL~~ek~e 1444 (1701)
...+.-.+....+..+++..+.++..++..++ .-...+..|+.++..+..++..++.-++. ....|+..+..
T Consensus 250 ~~leeEtr~k~~L~~~l~~le~e~~~L~eqle----eE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKk 325 (859)
T PF01576_consen 250 RQLEEETRAKQALEKQLRQLEHELEQLREQLE----EEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKK 325 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33333334444566666666666666666443 33344555666666555555555554433 34456667777
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhH----------HHHHHHHHHHH
Q 000301 1445 LSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQ-------LKSRKR----------DELKRVVKEKN 1507 (1701)
Q Consensus 1445 LE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~-------le~~kq----------eelkkL~kEK~ 1507 (1701)
+..++.+++.+++ +....+.+|..-+++|+..++++...+.. ++...+ .....+..++.
T Consensus 326 L~~~L~el~e~le----~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d 401 (859)
T PF01576_consen 326 LERKLQELQEQLE----EANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERD 401 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776 44444555555555555555555444333 322211 01122334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1508 ALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQ 1587 (1701)
Q Consensus 1508 aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q 1587 (1701)
.+....+.++.++..+...++.+......++...+.|..++.++...+....+.+.+|+..+.+|+.++..+...+.++.
T Consensus 402 ~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E 481 (859)
T PF01576_consen 402 AAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAE 481 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555444444555556666666666666555555555555555555555555555555554
Q ss_pred HHHHHHHHH-HH--HHHhh-ccCchhhhHHHhhHHHHHHHHHHHHHHhhhhhhhhhhcC
Q 000301 1588 QYIHTLEAQ-LQ--EEMSR-HAPLYGAGLEALSMKELETLARIHEEGLRQIHTLQQCKG 1642 (1701)
Q Consensus 1588 ~~I~eLe~~-l~--eE~e~-h~~~~~~~Le~~~~~e~e~L~~~~~~~~k~ir~lq~~~~ 1642 (1701)
..++..+.+ ++ -+|+. .+. ++..+..+++++-..--..+|+|+.|++++-
T Consensus 482 ~~l~~~E~~~lRl~~el~~~r~e-----~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE 535 (859)
T PF01576_consen 482 DALEAEEQKKLRLQVELQQLRQE-----IERELQEKEEEFEETRRNHQRQLESLEAELE 535 (859)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhhHHHHHHHhhHHHHHHHHhHHH
Confidence 444444331 11 12221 111 3555566666766666668888888888875
No 139
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.86 E-value=0.0075 Score=72.42 Aligned_cols=93 Identities=22% Similarity=0.247 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 000301 1505 EKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTE--------GEKREKEEQVARCEAYI 1576 (1701)
Q Consensus 1505 EK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~le--------k~k~~LE~~i~rLE~~l 1576 (1701)
....+..++...++....+-+.+.++.+++.+-+|.+.++..+++.++.....++ .+..+++..+.+|.+.-
T Consensus 340 ~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~n 419 (502)
T KOG0982|consen 340 LLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPN 419 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhcccc
Confidence 3333333444444444444444444444444444444444444444444333333 23344555566666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000301 1577 DGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1577 ~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
+.+...-.+.+.+|-.+..+.
T Consensus 420 r~l~eqneelngtilTls~q~ 440 (502)
T KOG0982|consen 420 RILSEQNEELNGTILTLSTQF 440 (502)
T ss_pred chhhhhhhhhhhhhhhHHHHH
Confidence 666666666666666665544
No 140
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.85 E-value=0.051 Score=66.08 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1509 LAERLKSAEAARKRFDEELKRYAT 1532 (1701)
Q Consensus 1509 L~eklk~lE~ei~~lEeel~kL~k 1532 (1701)
|++.+++++..+.++.+.+.++..
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~ 508 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLEL 508 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHH
Confidence 444455555555555555444443
No 141
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.14 Score=63.46 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhHHHHHH-HHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1364 LSMLREVAELANVDRAA-LWHQLCASEDEII--RIRDERKAEISNMVREKAVFSQKLAESEAAGNRL 1427 (1701)
Q Consensus 1364 Lq~lRqe~E~~~~e~e~-L~~klk~~e~ele--~lrkEle~e~~~le~Ek~~L~eqLee~E~al~el 1427 (1701)
++-+|++++.+..+.+. ..++++..+--++ +.+.+++.+.++++.+.+.+...|+...+++.+.
T Consensus 10 ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~ 76 (772)
T KOG0999|consen 10 VEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQY 76 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666665552 2333333333222 2233344555555555555555555555544444
No 142
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.84 E-value=0.036 Score=75.45 Aligned_cols=133 Identities=18% Similarity=0.175 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1503 VKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESK 1582 (1701)
Q Consensus 1503 ~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~e 1582 (1701)
..++..+..+++++++++..++.++.... .....++...|+++++.+..+...+..+..+++.++.+++.+++..+-.
T Consensus 1007 nl~~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~k 1084 (1294)
T KOG0962|consen 1007 NLTLRNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFK 1084 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 33444555555555555555555444433 2223344444444444444444444444445555555555554422211
Q ss_pred HHHH--HHHHHHHHHHHHHHHhhccCchhhhHHHhhH----HHHHHHHHHHHHHhhhhhhhhhhcCCCCC
Q 000301 1583 LQAC--QQYIHTLEAQLQEEMSRHAPLYGAGLEALSM----KELETLARIHEEGLRQIHTLQQCKGSPAA 1646 (1701)
Q Consensus 1583 L~e~--q~~I~eLe~~l~eE~e~h~~~~~~~Le~~~~----~e~e~L~~~~~~~~k~ir~lq~~~~~~~~ 1646 (1701)
-.+. ..++- +.+-.+.+-.|--.|...|+..+. .++++++.+ |++|=.+-+++.+
T Consensus 1085 d~~~nyr~~~i--e~~tt~~~~~DL~ky~~aLD~Aim~fHs~KMeeiN~i-------I~elW~~tYrG~D 1145 (1294)
T KOG0962|consen 1085 DAEKNYRKALI--ELKTTELSNKDLDKYYKALDKAIMQFHSMKMEEINRI-------IRELWRKTYRGTD 1145 (1294)
T ss_pred cHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhccCCCC
Confidence 1111 11111 111112222343345555666654 566666554 5555555555543
No 143
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.073 Score=73.18 Aligned_cols=56 Identities=16% Similarity=0.320 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1542 QSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1542 r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
+.+...+..++.++......+..++..+.++..+.......+.+.+..+.+++..+
T Consensus 364 ~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 419 (908)
T COG0419 364 KELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKEL 419 (908)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443344445555555555555555555555555555555544
No 144
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.015 Score=76.72 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhcCCCCCCchhhhhh
Q 000301 1079 WERILLKSLELLTDSNDEPLAVTIDF 1104 (1701)
Q Consensus 1079 ~~~v~~~~~~~l~~~~~e~l~~~i~f 1104 (1701)
-...++.|++.|-..--.++-.+|+.
T Consensus 486 R~~~~~eave~lKr~fPgv~GrviDL 511 (1141)
T KOG0018|consen 486 RRSRKQEAVEALKRLFPGVYGRVIDL 511 (1141)
T ss_pred HHHHHHHHHHHHHHhCCCccchhhhc
Confidence 44556667777766666666666664
No 145
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=1.4e-05 Score=109.42 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=109.6
Q ss_pred EEEEEeccccCCCceeecCcEEEcCeeEEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCceEEEEEEEEEEecCCCcc
Q 000301 95 CRWTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLSDESK 174 (1701)
Q Consensus 95 ~tw~I~nfS~lk~~~~~Sp~F~vGG~~WrL~vyP~G~~~~~~~~LSvYL~~~~~~~~~~~~W~v~a~f~l~Lvn~~d~~~ 174 (1701)
.+|++.+..... ....||.|..|+.+|++.+.|+|+. ...+++|+.|.... .. ..|.|++++.+.++|..+...
T Consensus 29 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~-~~~s~~~~~~~~v~~~~~~~~ 102 (1093)
T KOG1863|consen 29 TTIDGIDDKSLL-YRALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQ-SL-KSWSCGAQAVLRVKNTIDNLP 102 (1093)
T ss_pred ccccCcCcchhh-hHhcCccccccccceeeeeccccCc---ccceeEEeeeccCC-CC-cceEecchhhhccccCCCCch
Confidence 346665655554 4788999999999999999999983 46899999998775 34 459999999999999556665
Q ss_pred eeeccceeecCCCCCCCccCCCccccccccCCCCceecCCEEEEEEEEEEecCccc
Q 000301 175 TIHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNDAVLITADILILNESVS 230 (1701)
Q Consensus 175 si~~~~~h~Fs~~~~~wG~~~FI~~~~L~dp~~GfL~d~DsLtIea~V~Vlke~~~ 230 (1701)
...+...|+|.....+||+..|+.|+++.++..||+.+ |++.++++|.|-..+..
T Consensus 103 ~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~~~ 157 (1093)
T KOG1863|consen 103 DPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRN-GLEKLEKRVRVEQPTSL 157 (1093)
T ss_pred hhhhhhhhcccccccchhhccchhHhhccCcccccccc-cceeeeeeeeeecCCcc
Confidence 66677899999999999999999999999999999999 99999999999877643
No 146
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.81 E-value=0.028 Score=61.96 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1542 QSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1542 r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
...+.++..+.+++++.+.+..-.++.++.|+..++.++..+...+.....+..-+
T Consensus 140 d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eL 195 (205)
T KOG1003|consen 140 EKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKEL 195 (205)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444455555555555555555556666666666666666665555544444433
No 147
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.80 E-value=0.079 Score=70.26 Aligned_cols=30 Identities=13% Similarity=0.084 Sum_probs=20.7
Q ss_pred HHHhhHHHHHHHHH---HHHHHhhhhhhhhhhc
Q 000301 1612 LEALSMKELETLAR---IHEEGLRQIHTLQQCK 1641 (1701)
Q Consensus 1612 Le~~~~~e~e~L~~---~~~~~~k~ir~lq~~~ 1641 (1701)
|...+.++.-||+. ..++..-++..+++|+
T Consensus 277 Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 277 LKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666654 4455677888899999
No 148
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.048 Score=67.48 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1399 RKAEISNMVREKAVFSQKLAESEAAGNRLKSE---MRAEMDRFAREKKELSEQMREVESQLE 1457 (1701)
Q Consensus 1399 le~e~~~le~Ek~~L~eqLee~E~al~elkaE---leee~~rL~~ek~eLE~~l~ELE~rLe 1457 (1701)
+.+++++...|..+|.+++...+.++.+-.+. +.+....|.+..-.+..+++.+|..|+
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalE 390 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALE 390 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 33556666666666666665555544444332 244455555555555555555555554
No 149
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.79 E-value=0.071 Score=69.36 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhhhH-HHH
Q 000301 1401 AEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKE------------LSEQMREVESQLEWLRSERD-DEI 1467 (1701)
Q Consensus 1401 ~e~~~le~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ek~e------------LE~~l~ELE~rLe~l~~E~E-e~~ 1467 (1701)
+-+..+..+...|.+.+++.=.-+.++..++-.+++.|..-.++ ++.++.+++.++........ -.+
T Consensus 194 eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l 273 (560)
T PF06160_consen 194 EILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLEL 273 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 33445555555555555544444445555555555555554443 33334444444443222221 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1468 AKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYA 1531 (1701)
Q Consensus 1468 ~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~ 1531 (1701)
+........++++|..+-..++..-..+. ...+....+...+..+..+...+..+++++.
T Consensus 274 ~~~~~~~~~i~~~Id~lYd~le~E~~Ak~----~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~ 333 (560)
T PF06160_consen 274 DEVEEENEEIEERIDQLYDILEKEVEAKK----YVEKNLKELYEYLEHAKEQNKELKEELERVS 333 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555554444443222222 3344444444444444444444444444444
No 150
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.05 Score=72.09 Aligned_cols=19 Identities=5% Similarity=-0.022 Sum_probs=12.9
Q ss_pred cchhhHHHHHHHhcCCchh
Q 000301 1201 RHFSDIYILIEMLSIPCIA 1219 (1701)
Q Consensus 1201 ~~~~d~~~l~~~~s~~~~~ 1219 (1701)
+.+.|....+.=--.+.+|
T Consensus 39 SNlMDAISFVLGekss~LR 57 (1141)
T KOG0018|consen 39 SNLMDAISFVLGEKSSHLR 57 (1141)
T ss_pred HHHHHHHHHHhcCCCcccc
Confidence 6677877776666666655
No 151
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.76 E-value=0.084 Score=75.11 Aligned_cols=136 Identities=14% Similarity=0.113 Sum_probs=65.3
Q ss_pred chhhhHHHHHHHH-----HhcCcCh-hHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcC---CCCCcccccchHHHH
Q 000301 1279 RDDFTCVLGLAET-----LALSRDI-RVREFVKILYTILLKWYPDESYRGRMLKRLVDRATS---TTESSRGVDLDLEIL 1349 (1701)
Q Consensus 1279 ~~~f~~~l~la~~-----l~~s~~~-~v~~f~~~~y~~~f~~~~~~~~~~~~~~~lv~~~~s---~~~~~~ev~~~l~vL 1349 (1701)
.+-|..++.++-. |+...++ .+.+| ||.+|+-. ....|..|-+-+-. -.+...++.-.++.|
T Consensus 179 ~~ry~~l~~~l~~lr~P~Ls~~~~~~~l~~~---l~~~l~~l------~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l 249 (1353)
T TIGR02680 179 EERYAALLDLLIQLRQPQLSKKPDEGVLSDA---LTEALPPL------DDDELTDVADALEQLDEYRDELERLEALERAL 249 (1353)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCCChHHHHHH---HHHhCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777755 4445555 45444 55555442 23334443332211 111233333345555
Q ss_pred HHHHhhhccccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1350 VILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRL 1427 (1701)
Q Consensus 1350 ~~l~~~~~~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~el 1427 (1701)
..++.......+-++..-.++.-....+.+.+...+...+.+++..++ ++.++++++..|++++++++.++.++
T Consensus 250 ~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 250 RNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETARE----EERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555445555555555555555555555555555555555555444 33334444444444444333333333
No 152
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=97.76 E-value=0.0098 Score=75.07 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1536 TREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGME 1580 (1701)
Q Consensus 1536 ~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE 1580 (1701)
+.-+.+..|..+++.++.++.++++.+.++...+++|.+++..|+
T Consensus 213 aAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 213 AALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334445556666666666666666666666666666666666555
No 153
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.052 Score=70.43 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1502 VVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMES 1581 (1701)
Q Consensus 1502 L~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~ 1581 (1701)
|..++..+...+..+......+...+.++..+...+......+..++..++..++...+...++......|+..+...++
T Consensus 501 L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~ 580 (698)
T KOG0978|consen 501 LREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEA 580 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444334444444555555555556666666666666677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000301 1582 KLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1582 eL~e~q~~I~eLe~~l~e 1599 (1701)
++.+.+.++.+++..+..
T Consensus 581 ~le~i~~~~~e~~~ele~ 598 (698)
T KOG0978|consen 581 KLEQIQEQYAELELELEI 598 (698)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777776666544
No 154
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.75 E-value=0.0037 Score=66.98 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1532 TENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIH 1591 (1701)
Q Consensus 1532 kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~ 1591 (1701)
+....+|+.+......+....+++.++......++..+..|+.+....+.+++++..+..
T Consensus 80 rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 333334444444444455555555555555555555555555555555555554444433
No 155
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.1 Score=67.79 Aligned_cols=99 Identities=10% Similarity=0.215 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1501 RVVKEKNALAERLKSAEAARKRFDEEL-------KRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCE 1573 (1701)
Q Consensus 1501 kL~kEK~aL~eklk~lE~ei~~lEeel-------~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE 1573 (1701)
++-.++....+..+.+..++..+++.+ ..+......+|+..+.++.....+..++..+...+..+.....++.
T Consensus 486 klm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~ 565 (698)
T KOG0978|consen 486 KLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAK 565 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444 4444444455555555555555555555555555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1574 AYIDGMESKLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1574 ~~l~~lE~eL~e~q~~I~eLe~~l~e 1599 (1701)
..++.+..+++....++.+++.+..+
T Consensus 566 ~~~~~Lq~~~ek~~~~le~i~~~~~e 591 (698)
T KOG0978|consen 566 QSLEDLQIELEKSEAKLEQIQEQYAE 591 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777776655
No 156
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.72 E-value=0.19 Score=66.07 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000301 1503 VKEKNALAERLKSAEAAR 1520 (1701)
Q Consensus 1503 ~kEK~aL~eklk~lE~ei 1520 (1701)
+.||..|...+++.+.+.
T Consensus 278 e~EK~~L~~~L~e~Q~qL 295 (717)
T PF09730_consen 278 EREKSSLLSNLQESQKQL 295 (717)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 445555555555444443
No 157
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.72 E-value=0.011 Score=78.09 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1573 EAYIDGMESKLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1573 E~~l~~lE~eL~e~q~~I~eLe~~l~e 1599 (1701)
+-+|..+-++|++||+.|..|.+||..
T Consensus 732 e~EiaaAA~KLAECQeTI~sLGkQLks 758 (769)
T PF05911_consen 732 EKEIAAAAEKLAECQETIASLGKQLKS 758 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346889999999999999999999966
No 158
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=97.71 E-value=0.23 Score=59.52 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1538 EEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGME 1580 (1701)
Q Consensus 1538 EE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE 1580 (1701)
|+..+++...+.+.-.+...++.++.++|..+.-..+...+.+
T Consensus 284 eelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~ 326 (442)
T PF06637_consen 284 EELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAG 326 (442)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666666666555544444443333
No 159
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.19 Score=65.16 Aligned_cols=32 Identities=38% Similarity=0.566 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000301 1465 DEIAKLTTEKKVLQDRLHDAETQLSQLKSRKR 1496 (1701)
Q Consensus 1465 e~~~kLq~EKk~LqerI~eLE~qLe~le~~kq 1496 (1701)
.+++.++.|+++|+++++.++..|.-++..++
T Consensus 670 ~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~R 701 (988)
T KOG2072|consen 670 RQIEELEKERKELQSRLQYQEKKIDHLERAKR 701 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 67899999999999999999999999887776
No 160
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.71 E-value=0.03 Score=68.05 Aligned_cols=60 Identities=20% Similarity=0.219 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1540 ICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1540 ~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~e 1599 (1701)
+++.++.++.....++....+...+++.++.+++..+.++..+..+++++|+++++.+.+
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666667777777777777777777777777777777776633
No 161
>PRK09039 hypothetical protein; Validated
Probab=97.69 E-value=0.0057 Score=74.57 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000301 1548 VRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESK-LQACQQYIHTLEAQLQ 1598 (1701)
Q Consensus 1548 l~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~e-L~e~q~~I~eLe~~l~ 1598 (1701)
+..++..+..++.+..+.+.++++++.+++.+-++ ..++..+..++-..++
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~ 204 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLR 204 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444444444444445555555555555544433 4444444444444443
No 162
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.69 E-value=0.036 Score=61.08 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHH
Q 000301 1435 MDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKR---DELKRVVKEKNALAE 1511 (1701)
Q Consensus 1435 ~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kq---eelkkL~kEK~aL~e 1511 (1701)
+.-|....+.+|.++..++.+|... ....+.......+....+.=++.+|+..+.+-. ..+..+..+...+..
T Consensus 48 ~Kv~enr~~kdEE~~e~~e~qLkEA----k~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~ 123 (205)
T KOG1003|consen 48 MKVIENRAQKLEEKMEAQEAQLKEA----KHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDS 123 (205)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3444555556666666666666522 222222233333333333333444433221111 112223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1512 RLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIH 1591 (1701)
Q Consensus 1512 klk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~ 1591 (1701)
.++. +...-+++.......++.++.+...+.+.......+++...+|+..+++++..+..+..+...++..+.
T Consensus 124 nlk~-------l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 124 NLKS-------LSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333 333333444444444555666666777777777777777788888888888777777666666665555
Q ss_pred HH
Q 000301 1592 TL 1593 (1701)
Q Consensus 1592 eL 1593 (1701)
..
T Consensus 197 ~~ 198 (205)
T KOG1003|consen 197 ET 198 (205)
T ss_pred HH
Confidence 44
No 163
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.67 E-value=0.065 Score=73.61 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1443 KELSEQMREVESQLEWLRS----ERDDEIAKLTTEKKVLQDRLHDAETQLSQ 1490 (1701)
Q Consensus 1443 ~eLE~~l~ELE~rLe~l~~----E~Ee~~~kLq~EKk~LqerI~eLE~qLe~ 1490 (1701)
.+...++.+++.+|..... -.+.+...++.|...++.++..++..+..
T Consensus 147 ~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s 198 (1109)
T PRK10929 147 TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLS 198 (1109)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555566665543211 13355677778877777777777765544
No 164
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.67 E-value=0.038 Score=78.49 Aligned_cols=14 Identities=14% Similarity=0.041 Sum_probs=7.4
Q ss_pred HHHHHHhhccCcCC
Q 000301 1152 AETILRDIDCDDDF 1165 (1701)
Q Consensus 1152 ~e~~l~~i~~~~~~ 1165 (1701)
.++|+..++...+.
T Consensus 570 l~~e~~~~e~~~~~ 583 (1353)
T TIGR02680 570 LRTERERLEQGTDR 583 (1353)
T ss_pred HHHHHhccccCCCC
Confidence 44566666554443
No 165
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.66 E-value=0.39 Score=61.38 Aligned_cols=13 Identities=46% Similarity=0.524 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHh
Q 000301 1619 ELETLARIHEEGL 1631 (1701)
Q Consensus 1619 e~e~L~~~~~~~~ 1631 (1701)
++++|+..+++.+
T Consensus 406 eleeL~~~L~e~q 418 (786)
T PF05483_consen 406 ELEELKKILAEKQ 418 (786)
T ss_pred HHHHHHHHHHHHH
Confidence 3555666655544
No 166
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.65 E-value=0.037 Score=67.24 Aligned_cols=35 Identities=11% Similarity=0.020 Sum_probs=23.3
Q ss_pred ccc-hhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 000301 1359 IIR-PVLSMLREVAELANVDRAALWHQLCASEDEII 1393 (1701)
Q Consensus 1359 ~VK-PlLq~lRqe~E~~~~e~e~L~~klk~~e~ele 1393 (1701)
.++ |+|++-.=-...+.+.+.+-...+++.++++.
T Consensus 64 ~~~~P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~ 99 (325)
T PF08317_consen 64 YCTVPMLELYQFSCRELKKYISEGRQIFEEIEEETY 99 (325)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445 88888777666666677666666666655543
No 167
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.65 E-value=0.15 Score=66.96 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=41.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1367 LREVAELANVDRAALWHQLCASEDEIIRIRDERK-------------AEISNMVREKAVFSQKLAESEAAGNRLKSEMRA 1433 (1701)
Q Consensus 1367 lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle-------------~e~~~le~Ek~~L~eqLee~E~al~elkaElee 1433 (1701)
||.++-.+.-++..+...-.+++++...++|.+. -++.++++|...|..+++++..-..-.+..+++
T Consensus 81 lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleE 160 (717)
T PF09730_consen 81 LREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEE 160 (717)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666666666666666666653 445555555555555555443322222334555
Q ss_pred HHHHHHHHHH
Q 000301 1434 EMDRFAREKK 1443 (1701)
Q Consensus 1434 e~~rL~~ek~ 1443 (1701)
-++.|+.|+.
T Consensus 161 ALesl~~ERe 170 (717)
T PF09730_consen 161 ALESLKSERE 170 (717)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 168
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=97.63 E-value=0.14 Score=59.70 Aligned_cols=94 Identities=10% Similarity=0.178 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1364 LSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQ----KLAESEAAGNRLKSEMRAEMDRFA 1439 (1701)
Q Consensus 1364 Lq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~e----qLee~E~al~elkaEleee~~rL~ 1439 (1701)
|+.+++....+...-..+...+...++--..--+.+=.+.+.+..-++.|.- +++++..++.+.+..++..+..|+
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq 87 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQ 87 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4445555555554444444444444443222222222333344333343332 233333344444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000301 1440 REKKELSEQMREVESQLE 1457 (1701)
Q Consensus 1440 ~ek~eLE~~l~ELE~rLe 1457 (1701)
.+...|++++.....+|.
T Consensus 88 ~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 88 QQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 169
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.63 E-value=0.15 Score=70.19 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=11.1
Q ss_pred HHhhcCCchhHHHHHHHHHHhhcC
Q 000301 1311 LLKWYPDESYRGRMLKRLVDRATS 1334 (1701)
Q Consensus 1311 ~f~~~~~~~~~~~~~~~lv~~~~s 1334 (1701)
.+..|+...--.+-|+.=.+-+-.
T Consensus 14 ~~~~~~~~~p~~~~iq~~l~~~~~ 37 (1109)
T PRK10929 14 SWGAYAATAPDEKQITQELEQAKA 37 (1109)
T ss_pred hcchhcccCCCHHHHHHHHHHhhc
Confidence 345555543334445544444433
No 170
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.63 E-value=0.068 Score=59.20 Aligned_cols=47 Identities=23% Similarity=0.210 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1547 EVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTL 1593 (1701)
Q Consensus 1547 el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eL 1593 (1701)
++..++.++.++...+..|..++-.++.-+...++.+.+-..+|.+|
T Consensus 117 e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL 163 (193)
T PF14662_consen 117 ERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEEL 163 (193)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33333333333333333333333333333333333333333333333
No 171
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.62 E-value=0.15 Score=69.66 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1535 VTREEICQSLQDEVRRLTQTVGQTE-----GEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQ 1598 (1701)
Q Consensus 1535 k~lEE~~r~Le~el~elee~i~~le-----k~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~ 1598 (1701)
..++...++++.++..+..++.+.. ++...|+..++.+-.+...+.++..+.+.+|.-++++|.
T Consensus 1011 ~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1011 RNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3345555555556555555554444 556667777777777788888888888888888877775
No 172
>PF13514 AAA_27: AAA domain
Probab=97.61 E-value=0.037 Score=77.51 Aligned_cols=57 Identities=26% Similarity=0.339 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 000301 1543 SLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMES--KLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1543 ~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~--eL~e~q~~I~eLe~~l~e 1599 (1701)
.+..++..++.++..++.+..++...+.+++.++..+++ .+.+...++..++.++.+
T Consensus 893 ~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~ 951 (1111)
T PF13514_consen 893 ELEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEE 951 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555543 233444455555555544
No 173
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=6e-05 Score=103.48 Aligned_cols=132 Identities=21% Similarity=0.271 Sum_probs=108.7
Q ss_pred CcEEEEEEcccccchhhhhhcccCCceecCCcEEEcCceEEEEEEecCCCCCCCcEEEEEEEecCCCCCCCCeEEEEEEE
Q 000301 425 MGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVMDSRNTSSDWSCFVSHRL 504 (1701)
Q Consensus 425 ~~~~twkI~nFS~lk~~~k~~k~~G~~i~S~~F~vGG~~WrI~vYP~G~~~~~~~LSlYL~l~~~~~~~~~W~v~a~F~L 504 (1701)
...++|.+.+...+.. ...|+.|..|+.+|+|.+.|+|+. ...+++|+.+...... ..|.+++++.+
T Consensus 26 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~s~~~~~~~ 92 (1093)
T KOG1863|consen 26 NQSTTIDGIDDKSLLY----------RALSSNFGAGATKWKILIAPKVNS--LQSTRKKLEVMPSQSL-KSWSCGAQAVL 92 (1093)
T ss_pred cccccccCcCcchhhh----------HhcCccccccccceeeeeccccCc--ccceeEEeeeccCCCC-cceEecchhhh
Confidence 3445566655554432 247899999999999999999973 5789999999986655 55999999999
Q ss_pred EEEeCCCCCeeEEeccccccccCCcCccccccccccccccCCCCCccCCEEEEEEEEEEEecccc
Q 000301 505 SVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSI 569 (1701)
Q Consensus 505 ~Llnq~~~~~sv~k~~~~~F~~~~~~wG~~~FI~~s~L~d~~sGYLvnDsl~Ie~~V~Vlk~t~~ 569 (1701)
.++|..+......+...|+|.....+||+.+|+.++++.++..||+.+|++.+++.|.|...++.
T Consensus 93 ~v~~~~~~~~~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 157 (1093)
T KOG1863|consen 93 RVKNTIDNLPDPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL 157 (1093)
T ss_pred ccccCCCCchhhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence 99995554445556678899888899999999999999999999999999999999999988765
No 174
>PF13514 AAA_27: AAA domain
Probab=97.52 E-value=0.48 Score=66.74 Aligned_cols=22 Identities=5% Similarity=-0.074 Sum_probs=16.5
Q ss_pred ccchhHHHHHHHHHHhHHHHHH
Q 000301 1359 IIRPVLSMLREVAELANVDRAA 1380 (1701)
Q Consensus 1359 ~VKPlLq~lRqe~E~~~~e~e~ 1380 (1701)
--||.++.+..+.+.+..++..
T Consensus 147 g~~~~in~~l~~l~e~~~~l~~ 168 (1111)
T PF13514_consen 147 GRKPEINQALKELKELERELRE 168 (1111)
T ss_pred CCChHHHHHHHHHHHHHHHHHH
Confidence 5677888888887777777764
No 175
>PTZ00121 MAEBL; Provisional
Probab=97.51 E-value=0.21 Score=67.60 Aligned_cols=11 Identities=0% Similarity=-0.097 Sum_probs=7.5
Q ss_pred CceEEEEEEec
Q 000301 289 ECNLRISVYQS 299 (1701)
Q Consensus 289 G~~WrL~vYPn 299 (1701)
+|-|.+.+--+
T Consensus 379 ~ylWgvwv~e~ 389 (2084)
T PTZ00121 379 NFLWGVWFIEG 389 (2084)
T ss_pred cceeEEEEeec
Confidence 66677777654
No 176
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.50 E-value=0.46 Score=57.46 Aligned_cols=23 Identities=35% Similarity=0.274 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhh
Q 000301 1618 KELETLARIHEEGLRQIHTLQQC 1640 (1701)
Q Consensus 1618 ~e~e~L~~~~~~~~k~ir~lq~~ 1640 (1701)
++.+.+..-..++.+-.|.||++
T Consensus 286 ~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 286 KELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 44555555555566677777765
No 177
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.8 Score=60.22 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=32.0
Q ss_pred cccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000301 1358 EIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERK 1400 (1701)
Q Consensus 1358 ~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle 1400 (1701)
++.|-=.+.+|.....+....+.++.++...++.....+.+.+
T Consensus 553 ~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e 595 (984)
T COG4717 553 SRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWE 595 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6777777777777777777777777777777777666666655
No 178
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.49 E-value=0.029 Score=63.11 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1570 ARCEAYIDGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1570 ~rLE~~l~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
++|..++..++.++++....|..|++++
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444
No 179
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.48 E-value=0.73 Score=59.48 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 000301 1498 ELKRVVKEKNALAERL 1513 (1701)
Q Consensus 1498 elkkL~kEK~aL~ekl 1513 (1701)
|++.+..|++.+..++
T Consensus 479 ELqqLReERdRl~aeL 494 (739)
T PF07111_consen 479 ELQQLREERDRLDAEL 494 (739)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555443
No 180
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=97.47 E-value=0.0029 Score=73.66 Aligned_cols=87 Identities=26% Similarity=0.320 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1507 NALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQAC 1586 (1701)
Q Consensus 1507 ~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~ 1586 (1701)
..+..++..++.+.......+.+....+..+++.++.++.+...|+.+...++..+.+|+.+..+.+.+...|+.++.+.
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~ 87 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREA 87 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444443333333333333333333333333333333333333333333333333333333333344444444444
Q ss_pred HHHHHHH
Q 000301 1587 QQYIHTL 1593 (1701)
Q Consensus 1587 q~~I~eL 1593 (1701)
+..|..|
T Consensus 88 ~~~i~~l 94 (246)
T PF00769_consen 88 EAEIARL 94 (246)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 181
>PRK11281 hypothetical protein; Provisional
Probab=97.47 E-value=0.068 Score=73.64 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1431 MRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQ 1490 (1701)
Q Consensus 1431 leee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~ 1490 (1701)
++.++.+++.++++.+..+.++++++- ....+-++.++...+.++|+.+++.++..
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi----~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLV----SLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444444444444444 23334445555555555566666555443
No 182
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.47 E-value=0.013 Score=62.29 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1463 RDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQ 1542 (1701)
Q Consensus 1463 ~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r 1542 (1701)
.++.+.+.+.++..++++|..+++.|+..+..+. .+..+..+....+..++.++..+-.++.++..+..++.+.+.
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e----~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~ 83 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKE----CLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKE 83 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777777666554433 334444444444444555555444455555555444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1543 SLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDG 1578 (1701)
Q Consensus 1543 ~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~ 1578 (1701)
.+..+++..++++..++.....+...+..++++...
T Consensus 84 ~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q 119 (140)
T PF10473_consen 84 NLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQ 119 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555333
No 183
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.46 E-value=0.42 Score=56.27 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000301 1547 EVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQEEMSR 1603 (1701)
Q Consensus 1547 el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~eE~e~ 1603 (1701)
.-..+++++.+++.+-.-|+.++++.......-+..+-..|.+.++.=++++.|-+.
T Consensus 215 Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ek 271 (305)
T PF14915_consen 215 KQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEK 271 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443333333444444445555555555554443
No 184
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.46 E-value=0.014 Score=62.04 Aligned_cols=129 Identities=17% Similarity=0.166 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1498 ELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYID 1577 (1701)
Q Consensus 1498 elkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~ 1577 (1701)
++++.+.+++.+..++.++++++...++....+..+.....+.+..++.+ +..+...++.++..+.-+..++.
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~e-------l~~lt~el~~L~~EL~~l~sEk~ 83 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEE-------LEELTSELNQLELELDTLRSEKE 83 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777776666666555555443333333333333 33333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHhhHHHHHHHHHHHHHHhhhhhhhh
Q 000301 1578 GMESKLQACQQYIHTLEAQLQEEMSRHAPLYGAGLEALSMKELETLARIHEEGLRQIHTLQ 1638 (1701)
Q Consensus 1578 ~lE~eL~e~q~~I~eLe~~l~eE~e~h~~~~~~~Le~~~~~e~e~L~~~~~~~~k~ir~lq 1638 (1701)
.+...++..|.+|.+|+....+ +.+| ...+|....+-.+++...-..+++++++|+
T Consensus 84 ~L~k~lq~~q~kv~eLE~~~~~-~~~~----l~~~E~ek~q~~e~~~~~ve~L~~ql~~L~ 139 (140)
T PF10473_consen 84 NLDKELQKKQEKVSELESLNSS-LENL----LQEKEQEKVQLKEESKSAVEMLQKQLKELN 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4444444444444444433211 2222 112555555666666666666666666654
No 185
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.82 Score=59.61 Aligned_cols=36 Identities=14% Similarity=-0.024 Sum_probs=23.0
Q ss_pred HHHHHHhhcCCCCCcccccchHHHHHHHHhhhcccc
Q 000301 1325 LKRLVDRATSTTESSRGVDLDLEILVILVCEEQEII 1360 (1701)
Q Consensus 1325 ~~~lv~~~~s~~~~~~ev~~~l~vL~~l~~~~~~~V 1360 (1701)
..+-|+++.-+.+..+++-++=.-|...=++..+++
T Consensus 548 ~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~ 583 (988)
T KOG2072|consen 548 KEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQ 583 (988)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHH
Confidence 445677776666666666666666666666666655
No 186
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.46 E-value=0.018 Score=61.74 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1547 EVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQAC 1586 (1701)
Q Consensus 1547 el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~ 1586 (1701)
.+++...+..+.++....|+......+..+..++.+..+.
T Consensus 102 kl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 102 KLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3444444444444455555555555555555555555443
No 187
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=97.45 E-value=0.044 Score=61.91 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1575 YIDGMESKLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1575 ~l~~lE~eL~e~q~~I~eLe~~l~e 1599 (1701)
.+.+++.+|+.+-+.++-||..+.+
T Consensus 134 sleDfeqrLnqAIErnAfLESELdE 158 (333)
T KOG1853|consen 134 SLEDFEQRLNQAIERNAFLESELDE 158 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3556677777777777777776644
No 188
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.44 E-value=0.14 Score=56.84 Aligned_cols=42 Identities=12% Similarity=0.081 Sum_probs=18.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 000301 1379 AALWHQLCASEDEIIRIRDERK---AEISNMVREKAVFSQKLAES 1420 (1701)
Q Consensus 1379 e~L~~klk~~e~ele~lrkEle---~e~~~le~Ek~~L~eqLee~ 1420 (1701)
+++....+++.++...+++.++ ....+|.+++..|..++..+
T Consensus 11 ~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 11 EDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333 33444444455555444433
No 189
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=97.44 E-value=0.32 Score=58.68 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000301 1539 EICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQEEMS 1602 (1701)
Q Consensus 1539 E~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~eE~e 1602 (1701)
..++.|+.|+.+++..+..+++.-. ..+.++.++...++.+. ..|+.++..||+
T Consensus 253 ~hi~~l~~EveRlrt~l~~Aqk~~~---ek~~qy~~Ee~~~reen-------~rlQrkL~~e~e 306 (552)
T KOG2129|consen 253 LHIDKLQAEVERLRTYLSRAQKSYQ---EKLMQYRAEEVDHREEN-------ERLQRKLINELE 306 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHH-------HHHHHHHHHHHH
Confidence 3456667777777766666665432 22344444444444433 344555555666
No 190
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.44 E-value=0.088 Score=59.74 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1508 ALAERLKSAEAARKRFDEELKRYATE 1533 (1701)
Q Consensus 1508 aL~eklk~lE~ei~~lEeel~kL~kE 1533 (1701)
.++++++.++-+.+.++....++.+|
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 191
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.44 E-value=0.1 Score=61.92 Aligned_cols=88 Identities=24% Similarity=0.261 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1510 AERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQY 1589 (1701)
Q Consensus 1510 ~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~ 1589 (1701)
.+++..+..++..+.+++.+...+.....+++..|..++-.++.+.++.-.+..++...+......-+.|.+++.++++.
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777766667777777777777777777766666666666665555555566666655555
Q ss_pred HHHHHHHH
Q 000301 1590 IHTLEAQL 1597 (1701)
Q Consensus 1590 I~eLe~~l 1597 (1701)
..+...-+
T Consensus 285 Y~E~~~mL 292 (306)
T PF04849_consen 285 YAECMAML 292 (306)
T ss_pred HHHHHHHH
Confidence 55554444
No 192
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.071 Score=66.09 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1430 EMRAEMDRFAREKKELSEQMREVESQLEWLRS---ERDDEIAKLTTEKKVLQDRLHDAETQLSQ 1490 (1701)
Q Consensus 1430 Eleee~~rL~~ek~eLE~~l~ELE~rLe~l~~---E~Ee~~~kLq~EKk~LqerI~eLE~qLe~ 1490 (1701)
|+.++++...++.++|...+..+...+.+-+. +..+....|..-.-+++.++.+++-.|++
T Consensus 328 E~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEq 391 (654)
T KOG4809|consen 328 ERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQ 391 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 55667777777777777776666665541111 22233444444444444555555444443
No 193
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=97.41 E-value=0.13 Score=61.21 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhhhhhhhhcC
Q 000301 1622 TLARIHEEGLRQIHTLQQCKG 1642 (1701)
Q Consensus 1622 ~L~~~~~~~~k~ir~lq~~~~ 1642 (1701)
+|.-+.+|+..-|-.|..|+.
T Consensus 555 ELSiaKakadcdIsrLKEqLk 575 (593)
T KOG4807|consen 555 ELSIAKAKADCDISRLKEQLK 575 (593)
T ss_pred HHHHHHHhhhccHHHHHHHHH
Confidence 455555555555555555554
No 194
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.40 E-value=0.1 Score=60.84 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1434 EMDRFAREKKELSEQMREVESQLE 1457 (1701)
Q Consensus 1434 e~~rL~~ek~eLE~~l~ELE~rLe 1457 (1701)
+++++..++..++.+|.+++.+|.
T Consensus 74 ~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 74 EIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 195
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.40 E-value=0.26 Score=65.37 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=48.9
Q ss_pred hcCCchhHHHHHHHHHHhhcCCCCCccc----ccch----HHHHHHHHhhhccccch-hHHHHHHHHHHhHHHHHHHHHH
Q 000301 1314 WYPDESYRGRMLKRLVDRATSTTESSRG----VDLD----LEILVILVCEEQEIIRP-VLSMLREVAELANVDRAALWHQ 1384 (1701)
Q Consensus 1314 ~~~~~~~~~~~~~~lv~~~~s~~~~~~e----v~~~----l~vL~~l~~~~~~~VKP-lLq~lRqe~E~~~~e~e~L~~k 1384 (1701)
.+.|..|-+-.+..||.|.-=--+|.++ -.+. |.-...|+..|-++--| ||++.+...+.. +++..|++.
T Consensus 118 ~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr-~~e~~Le~~ 196 (1072)
T KOG0979|consen 118 FINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLR-EDEKSLEDK 196 (1072)
T ss_pred eeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHH-HHHHHHHHH
Confidence 3567778888999999887333344322 1221 44445566666677778 888887665553 333345555
Q ss_pred HHhHHHHHHHHHH
Q 000301 1385 LCASEDEIIRIRD 1397 (1701)
Q Consensus 1385 lk~~e~ele~lrk 1397 (1701)
+...++.+.+++.
T Consensus 197 ~~~~~~~l~~L~~ 209 (1072)
T KOG0979|consen 197 LTTKTEKLNRLED 209 (1072)
T ss_pred HHHhHHHHHHHHH
Confidence 5555555555444
No 196
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.40 E-value=0.59 Score=56.51 Aligned_cols=54 Identities=11% Similarity=0.261 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1544 LQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1544 Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
...+++....+++.++++...+...-+.....+-.|-.+......++..+++++
T Consensus 242 fk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~ 295 (309)
T PF09728_consen 242 FKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKI 295 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444344444444444444444444444444
No 197
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.39 E-value=0.53 Score=59.08 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=12.1
Q ss_pred HHHHHHHhhhhhhhhhhcCCC
Q 000301 1624 ARIHEEGLRQIHTLQQCKGSP 1644 (1701)
Q Consensus 1624 ~~~~~~~~k~ir~lq~~~~~~ 1644 (1701)
+.-..|..++|++.--..-.+
T Consensus 416 re~l~~~~~~l~eikR~mek~ 436 (570)
T COG4477 416 RENLERLKSKLHEIKRYMEKS 436 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 444455677777766555444
No 198
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.092 Score=61.19 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1465 DEIAKLTTEKKVLQDRLHDAETQLSQ 1490 (1701)
Q Consensus 1465 e~~~kLq~EKk~LqerI~eLE~qLe~ 1490 (1701)
+++.+++.|.++++.+|.++++.|.+
T Consensus 73 ~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 73 KEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555554444443
No 199
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=97.38 E-value=0.2 Score=57.08 Aligned_cols=98 Identities=26% Similarity=0.426 Sum_probs=64.1
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1361 RPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAR 1440 (1701)
Q Consensus 1361 KPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ 1440 (1701)
|.+|.+|+...+.-...+..++..+.....++..-+.++. ......+..|+.++-+.+.....+..++.+ +..+..
T Consensus 3 ~~~l~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~---s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~-l~~~~~ 78 (206)
T PF14988_consen 3 KEFLEYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELV---SRYAKQTSELQDQLLQKEKEQAKLQQELQA-LKEFRR 78 (206)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHH
Confidence 5788899988888888888888887777777655555443 344456677777776666666666655543 244555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 000301 1441 EKKELSEQMREVESQLEWLRSE 1462 (1701)
Q Consensus 1441 ek~eLE~~l~ELE~rLe~l~~E 1462 (1701)
.+...+.+|..|+.++...+.+
T Consensus 79 ~k~~qe~eI~~Le~e~~~~~~e 100 (206)
T PF14988_consen 79 LKEQQEREIQTLEEELEKMRAE 100 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666644443
No 200
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.36 E-value=0.32 Score=62.74 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1467 IAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEA 1518 (1701)
Q Consensus 1467 ~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~ 1518 (1701)
+..|..|+..+++++..++.+|.++..+.++.-..+..+...+++..++++.
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~ 327 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQ 327 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445555555555555555555554444332222333344444444444433
No 201
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.36 E-value=0.063 Score=63.70 Aligned_cols=91 Identities=19% Similarity=0.298 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1504 KEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKL 1583 (1701)
Q Consensus 1504 kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL 1583 (1701)
.....|.+.|..-.++...+.+++.+|..+...++.+.+.+..+-+++...+......-..|..++..++.+-....+-+
T Consensus 213 ~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL 292 (306)
T PF04849_consen 213 QQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAML 292 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555555555555555555555555555555554444444444444555555544555555
Q ss_pred HHHHHHHHHHH
Q 000301 1584 QACQQYIHTLE 1594 (1701)
Q Consensus 1584 ~e~q~~I~eLe 1594 (1701)
.+.|+++..++
T Consensus 293 ~EaQEElk~lR 303 (306)
T PF04849_consen 293 HEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHhh
Confidence 55555555444
No 202
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.35 E-value=0.11 Score=58.72 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1507 NALAERLKSAEAARKRFDEELKRYA 1531 (1701)
Q Consensus 1507 ~aL~eklk~lE~ei~~lEeel~kL~ 1531 (1701)
..|..++..++..+...+..+..|.
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Le 145 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELE 145 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333333
No 203
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.35 E-value=0.39 Score=58.44 Aligned_cols=130 Identities=22% Similarity=0.149 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHH
Q 000301 1445 LSEQMREVESQLEWLRS---ERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKR---DELKRVVKEKNALAERLKSAEA 1518 (1701)
Q Consensus 1445 LE~~l~ELE~rLe~l~~---E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kq---eelkkL~kEK~aL~eklk~lE~ 1518 (1701)
++.+++.++....+++. .....+++|..++.++.++|+.+..++...+..+. +.+.+.+++|.+.++=+.++..
T Consensus 302 lqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrk 381 (502)
T KOG0982|consen 302 LQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRK 381 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444444333333 24456778888888888888888777665443332 3444555555555444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1519 ARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGME 1580 (1701)
Q Consensus 1519 ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE 1580 (1701)
++..+....-.+..-...++. .+..++.++++.+.+.-+.+++|-..+...+-.+.
T Consensus 382 elehlr~~kl~~a~p~rgrsS------aRe~eleqevkrLrq~nr~l~eqneelngtilTls 437 (502)
T KOG0982|consen 382 ELEHLRRRKLVLANPVRGRSS------AREIELEQEVKRLRQPNRILSEQNEELNGTILTLS 437 (502)
T ss_pred HHHHHHHHHHHhhccccCchh------HHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHH
Confidence 333222221111100000011 23344555566666666666666666666644433
No 204
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=97.34 E-value=0.11 Score=61.74 Aligned_cols=102 Identities=21% Similarity=0.151 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-hh-------
Q 000301 1538 EEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQEEMSRHAPL-YG------- 1609 (1701)
Q Consensus 1538 EE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~eE~e~h~~~-~~------- 1609 (1701)
-+.++.++.+++-+.+++.+-.-+...|-.++..-+..++.-+.+-+++...-++|...+.+|+.+-+-+ .|
T Consensus 420 leelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGs 499 (593)
T KOG4807|consen 420 LEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGS 499 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCC
Confidence 3445556666666666666666666666666555555566666666666666677777777776653322 01
Q ss_pred --------hhHHHhhHHHHHHHHHHHHHHhhhhhhhhh
Q 000301 1610 --------AGLEALSMKELETLARIHEEGLRQIHTLQQ 1639 (1701)
Q Consensus 1610 --------~~Le~~~~~e~e~L~~~~~~~~k~ir~lq~ 1639 (1701)
--||.+++-|+-+|+=+.-...----|||-
T Consensus 500 plaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQt 537 (593)
T KOG4807|consen 500 PLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQT 537 (593)
T ss_pred ccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 128888888888888877763222245553
No 205
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.34 E-value=0.025 Score=76.13 Aligned_cols=26 Identities=8% Similarity=0.078 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcC
Q 000301 1617 MKELETLARIHEEGLRQIHTLQQCKG 1642 (1701)
Q Consensus 1617 ~~e~e~L~~~~~~~~k~ir~lq~~~~ 1642 (1701)
+++.+..+.++..++.+..+.+.+..
T Consensus 382 ~Re~~~~~~~Y~~ll~r~~e~~~~~~ 407 (754)
T TIGR01005 382 QRDAAAKRQLYESYLTNYRQAASRQN 407 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35556666666677777777665554
No 206
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.32 E-value=1 Score=58.12 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1465 DEIAKLTTEKKVLQDRLHDAETQLS 1489 (1701)
Q Consensus 1465 e~~~kLq~EKk~LqerI~eLE~qLe 1489 (1701)
..+.+++.+..-.+.++..+...+.
T Consensus 165 ss~s~~q~e~~~~~~~~~~~~s~l~ 189 (716)
T KOG4593|consen 165 SSLSELQWEVMLQEMRAKRLHSELQ 189 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333
No 207
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.073 Score=68.62 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=38.6
Q ss_pred chhHHHHHHHhccCCCCcchhHHhhccccccCCCc--hHHHHH-----HHHHhcc
Q 000301 1007 PQSAQKISLVLDKAPKHLQPDLVALVPKLVEHSEH--PLAADA-----LIERLQK 1054 (1701)
Q Consensus 1007 ~~~~~k~~~~l~~~p~~lq~d~i~~~p~~~~~~~h--~~~a~~-----l~~~l~~ 1054 (1701)
|....|||-+|.-+-.-+..|-|.+|-+||-+.-| .+||++ |.+.+.+
T Consensus 165 P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 165 PMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred chhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 78889999999999888999999999999988876 467754 4555554
No 208
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=97.32 E-value=0.025 Score=71.58 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1548 VRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQ 1587 (1701)
Q Consensus 1548 l~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q 1587 (1701)
.+.|.+++..+.++...++...+++...+.+|.++++.+.
T Consensus 218 kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 218 KNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555554444
No 209
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.30 E-value=5.6e-05 Score=100.26 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1465 DEIAKLTTEKKVLQDRLHDAETQLSQLKS 1493 (1701)
Q Consensus 1465 e~~~kLq~EKk~LqerI~eLE~qLe~le~ 1493 (1701)
....+|+.+.+...+++..++.+++++..
T Consensus 495 ~~~~~Le~~~~~~~~~~~~lq~qle~lq~ 523 (713)
T PF05622_consen 495 RRKEKLEEENREANEKILELQSQLEELQK 523 (713)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665443
No 210
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.27 E-value=0.54 Score=63.42 Aligned_cols=44 Identities=32% Similarity=0.406 Sum_probs=27.7
Q ss_pred HHHhcC--cChhHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCCCCccccc
Q 000301 1290 ETLALS--RDIRVREFVKILYTILLKWYPDESYRGRMLKRLVDRATSTTESSRGVD 1343 (1701)
Q Consensus 1290 ~~l~~s--~~~~v~~f~~~~y~~~f~~~~~~~~~~~~~~~lv~~~~s~~~~~~ev~ 1343 (1701)
|++.+| ++-|.|+.|.. =+-+.. =.||+.+||+|..-. +-||=.
T Consensus 301 ENI~RSGA~~~RArEAG~I-NqSLLT-------LGRVInALVe~s~HI--PYRESK 346 (1041)
T KOG0243|consen 301 ENISRSGARNGRAREAGEI-NQSLLT-------LGRVINALVEHSGHI--PYRESK 346 (1041)
T ss_pred ccccccccccchhHHhhhh-hHHHHH-------HHHHHHHHHccCCCC--CchHHH
Confidence 445444 56788888864 222222 279999999998766 445544
No 211
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.27 E-value=0.058 Score=68.95 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCcChhHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCCCCcccccchHHHHHHHHhhhccccchhH
Q 000301 1285 VLGLAETLALSRDIRVREFVKILYTILLKWYPDESYRGRMLKRLVDRATSTTESSRGVDLDLEILVILVCEEQEIIRPVL 1364 (1701)
Q Consensus 1285 ~l~la~~l~~s~~~~v~~f~~~~y~~~f~~~~~~~~~~~~~~~lv~~~~s~~~~~~ev~~~l~vL~~l~~~~~~~VKPlL 1364 (1701)
||.||++|=.-.-.-..+-+++||+..| ++ ++.-+++||++|-+.|-. +.-++-+||+
T Consensus 236 lllla~aldpr~pnmm~dvvkllsalci-V~-ee~~~ekvl~aiT~~ae~--------------------~~veRF~piv 293 (1102)
T KOG1924|consen 236 LLLLARALDPREPNMMTDVVKLLSALCI-VG-EENGLEKVLEAITTIAEA--------------------KPVERFRPIV 293 (1102)
T ss_pred HHHHHHhcCccCccHHHHHHHHHHHHhe-ee-hhhHHHHHHHHHHHHHhh--------------------cchhhhhhHH
Confidence 8888887755444455678888887544 44 577778898888776533 2335678888
Q ss_pred HHHHHHH
Q 000301 1365 SMLREVA 1371 (1701)
Q Consensus 1365 q~lRqe~ 1371 (1701)
+.++..+
T Consensus 294 ~gl~~~e 300 (1102)
T KOG1924|consen 294 EGLDFLE 300 (1102)
T ss_pred HHHhccc
Confidence 8777654
No 212
>PTZ00121 MAEBL; Provisional
Probab=97.27 E-value=0.7 Score=63.05 Aligned_cols=11 Identities=9% Similarity=-0.224 Sum_probs=8.3
Q ss_pred CceEEEEEEec
Q 000301 461 NRDCRLIVYPR 471 (1701)
Q Consensus 461 G~~WrI~vYP~ 471 (1701)
||-|-+.+--+
T Consensus 379 ~ylWgvwv~e~ 389 (2084)
T PTZ00121 379 NFLWGVWFIEG 389 (2084)
T ss_pred cceeEEEEeec
Confidence 78888888744
No 213
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.26 E-value=0.97 Score=63.28 Aligned_cols=24 Identities=13% Similarity=0.354 Sum_probs=17.9
Q ss_pred chhHHHhhhcchhhHHHHHHHHHHH
Q 000301 841 SPSVMNLLMGVKVLQQAIIDLLLDI 865 (1701)
Q Consensus 841 ~~sl~~ll~~v~~lq~~ii~~l~~~ 865 (1701)
..-++.-|.|+.+.. .|-..|.++
T Consensus 169 R~~il~~l~g~~~y~-~~~~~l~er 192 (1047)
T PRK10246 169 RAELLEELTGTEIYG-QISAMVFEQ 192 (1047)
T ss_pred HHHHHHHHhCcHHHH-HHHHHHHHH
Confidence 356888899999887 666666655
No 214
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=97.26 E-value=0.039 Score=70.73 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhh
Q 000301 1618 KELETLARIHEEGLRQIHTLQ 1638 (1701)
Q Consensus 1618 ~e~e~L~~~~~~~~k~ir~lq 1638 (1701)
++.+-.+..+...+++..+.+
T Consensus 362 Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 362 RDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555666555544
No 215
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=97.26 E-value=0.052 Score=67.84 Aligned_cols=210 Identities=15% Similarity=0.169 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHH
Q 000301 1398 ERKAEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRSERD---DEIAKLTTEK 1474 (1701)
Q Consensus 1398 Ele~e~~~le~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~E---e~~~kLq~EK 1474 (1701)
++++++.+|+.+++.|+-|.. -+.+ +++.-.+.+.+||--|.+...+|...++-+. -.+..|+..|
T Consensus 108 ~yQerLaRLe~dkesL~LQvs----vLte-------qVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqK 176 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVS----VLTE-------QVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQK 176 (861)
T ss_pred HHHHHHHHHhcchhhheehHH----HHHH-------HHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHH
Confidence 455678888888888777763 2222 2222223344555555555444442111111 1123334444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1475 KVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDE-ELKRYATENVTREEICQSLQDEVRRLTQ 1553 (1701)
Q Consensus 1475 k~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~ei~~lEe-el~kL~kE~k~lEE~~r~Le~el~elee 1553 (1701)
=+|-.++.+|+-++. .+++|+...+++++..|..+.++.. ....+..|..+.|-..+....++..|+|
T Consensus 177 lDLmaevSeLKLklt-----------alEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~E 245 (861)
T KOG1899|consen 177 LDLMAEVSELKLKLT-----------ALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLRE 245 (861)
T ss_pred hHHHHHHHHhHHHHH-----------HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHH
Confidence 344444443333333 3445555555555555555544431 1234444555555555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHhhHHHHHHHHHHHHH--Hh
Q 000301 1554 TVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQEEMSRHAPLYGAGLEALSMKELETLARIHEE--GL 1631 (1701)
Q Consensus 1554 ~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~eE~e~h~~~~~~~Le~~~~~e~e~L~~~~~~--~~ 1631 (1701)
+..+-+.+..++..++ .+.+-++-+....++..|...+..-|.. ..+-.+..|.|++...+ --
T Consensus 246 q~~eK~~e~~rl~~~l------v~~~~~d~e~~~~rd~~lk~a~eslm~a---------ne~kdr~ie~lr~~ln~y~k~ 310 (861)
T KOG1899|consen 246 QRSEKNDEEMRLLRTL------VQRLMADGEHKSLRDNTLKNALESLMRA---------NEQKDRFIESLRNYLNNYDKN 310 (861)
T ss_pred HHhhhhhHHHHHHHHH------HHHHhhcccchhhHHHHHHHHHHHHHhh---------chhhhhHHHHHHHHhhhhhhh
Confidence 5544443332222111 2222222233333444555444331111 11223667777777766 33
Q ss_pred hhhhh-hhhhcCCC
Q 000301 1632 RQIHT-LQQCKGSP 1644 (1701)
Q Consensus 1632 k~ir~-lq~~~~~~ 1644 (1701)
++|+- +|-..+.+
T Consensus 311 ~~iv~i~qg~~~~~ 324 (861)
T KOG1899|consen 311 AQIVRILQGEPSDS 324 (861)
T ss_pred hhhhhhhcCCCccc
Confidence 33433 55444443
No 216
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=97.26 E-value=0.86 Score=56.81 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=22.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1383 HQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRL 1427 (1701)
Q Consensus 1383 ~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~el 1427 (1701)
.++..+-.++...+.+++..+.++..|+..|......++.++..+
T Consensus 46 ~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~ 90 (384)
T PF03148_consen 46 KRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEAL 90 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555555555555555555555554444444433
No 217
>PLN02939 transferase, transferring glycosyl groups
Probab=97.24 E-value=0.095 Score=70.57 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1464 DDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYAT 1532 (1701)
Q Consensus 1464 Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~k 1532 (1701)
-.+...|.+|+..|.+.|+-++.++.... +-.+.+-++++|+.-|+..++++|.......+.+.++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAELIEVA-ETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSP 292 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Confidence 35667777888888888888877766643 222456678888888888888888887776666665553
No 218
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.24 E-value=7e-05 Score=99.34 Aligned_cols=14 Identities=21% Similarity=0.646 Sum_probs=6.4
Q ss_pred hhhhhhhccccccc
Q 000301 1101 TIDFIFKAASQCQH 1114 (1701)
Q Consensus 1101 ~i~f~~~~~~~~~~ 1114 (1701)
.+.+||-+|=+|.+
T Consensus 114 LL~LlLgcAV~c~~ 127 (713)
T PF05622_consen 114 LLQLLLGCAVQCEN 127 (713)
T ss_dssp HHHHHHHHTTSSST
T ss_pred HHHHHHHHhhcCcc
Confidence 33444444445553
No 219
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.23 E-value=0.2 Score=60.50 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1541 CQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1541 ~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~e 1599 (1701)
++++++++.....++....+...+++.++..++..+.+...+..+++.+|+++++.+.+
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555556666666666777777777777777777777776643
No 220
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.20 E-value=2.4 Score=59.43 Aligned_cols=13 Identities=0% Similarity=-0.043 Sum_probs=7.2
Q ss_pred hhhhhhhhcCCCC
Q 000301 1633 QIHTLQQCKGSPA 1645 (1701)
Q Consensus 1633 ~ir~lq~~~~~~~ 1645 (1701)
.+..|.+++...-
T Consensus 492 ~~~~Lr~~L~~Ge 504 (1047)
T PRK10246 492 DLEAQRAQLQAGQ 504 (1047)
T ss_pred HHHHHHHhCCCCC
Confidence 3444666766443
No 221
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=97.18 E-value=0.33 Score=59.62 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=11.7
Q ss_pred chhhHHHHHHHhcCCchhHHHH
Q 000301 1202 HFSDIYILIEMLSIPCIAVEAA 1223 (1701)
Q Consensus 1202 ~~~d~~~l~~~~s~~~~~~~~~ 1223 (1701)
..+|+-+...+-.+-...+++.
T Consensus 227 ~~~dlra~y~~e~~~vssKeiq 248 (527)
T PF15066_consen 227 NLLDLRANYKTEETAVSSKEIQ 248 (527)
T ss_pred hhHhhhhhhhhhhcccCchhhh
Confidence 4467666555555544434443
No 222
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.17 E-value=0.17 Score=61.47 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000301 1465 DEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALA 1510 (1701)
Q Consensus 1465 e~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~ 1510 (1701)
+.+++++...--|..+|.++|+++..++..-++++..+..+|....
T Consensus 323 ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~ 368 (554)
T KOG4677|consen 323 EDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASIL 368 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhh
Confidence 4555666666666666666666655555544444444444444433
No 223
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.15 E-value=0.67 Score=52.81 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1465 DEIAKLTTEKKVLQDRLHDAETQLSQL 1491 (1701)
Q Consensus 1465 e~~~kLq~EKk~LqerI~eLE~qLe~l 1491 (1701)
..+.++..|+..+...+..++....++
T Consensus 69 ~~i~~~~~erdq~~~dL~s~E~sfsdl 95 (207)
T PF05010_consen 69 AEIQKLLKERDQAYADLNSLEKSFSDL 95 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhHHHH
Confidence 344455555555555555555555544
No 224
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.13 E-value=0.066 Score=66.70 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhh
Q 000301 1575 YIDGMESKLQACQQYIHTLEAQLQEEMSRHAPLYGAG 1611 (1701)
Q Consensus 1575 ~l~~lE~eL~e~q~~I~eLe~~l~eE~e~h~~~~~~~ 1611 (1701)
++..++.++...+.++..++.++.. ..=.||.=|.-
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~-~~i~AP~dG~V 282 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQR-LIIRSPVDGTV 282 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cEEECCCCcEE
Confidence 3444444444455555544444421 12267765543
No 225
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.12 E-value=0.53 Score=62.67 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=30.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 000301 1365 SMLREVAELANVDRAALWHQLCASEDEIIRIRDERK--AEISNMVREKAVFSQ 1415 (1701)
Q Consensus 1365 q~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle--~e~~~le~Ek~~L~e 1415 (1701)
.-+|.++..+......-...+..+++++..+.++.+ .+..+....++.|.+
T Consensus 184 ~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~ 236 (1072)
T KOG0979|consen 184 MDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEK 236 (1072)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666777667777777777777777666 333344444444433
No 226
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.12 E-value=0.1 Score=64.96 Aligned_cols=22 Identities=9% Similarity=0.329 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000301 1569 VARCEAYIDGMESKLQACQQYI 1590 (1701)
Q Consensus 1569 i~rLE~~l~~lE~eL~e~q~~I 1590 (1701)
+...+.++..++.++...+..+
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 227
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.11 E-value=0.43 Score=57.71 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=21.0
Q ss_pred cccc-hhHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 000301 1358 EIIR-PVLSMLREVAELANVDRAALWHQLCASEDEI 1392 (1701)
Q Consensus 1358 ~~VK-PlLq~lRqe~E~~~~e~e~L~~klk~~e~el 1392 (1701)
.++. |+|+.-+---..+.+.+.+=....++.++++
T Consensus 58 ~~~~iP~LElY~~sC~EL~~~I~egr~~~~~~E~et 93 (312)
T smart00787 58 GYCTVPLLELYQFSCKELKKYISEGRDLFKEIEEET 93 (312)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566 7877766666666666665555555555544
No 228
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=97.08 E-value=0.075 Score=67.05 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhh
Q 000301 1618 KELETLARIHEEGLRQIHTLQQC 1640 (1701)
Q Consensus 1618 ~e~e~L~~~~~~~~k~ir~lq~~ 1640 (1701)
++.+--+.++..++.+..+.+-+
T Consensus 349 r~~~~~~~~y~~ll~r~~e~~l~ 371 (444)
T TIGR03017 349 RDVENAQRAYDAAMQRYTQTRIE 371 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666665543
No 229
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=97.05 E-value=1.1 Score=52.84 Aligned_cols=49 Identities=35% Similarity=0.554 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1432 RAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAE 1485 (1701)
Q Consensus 1432 eee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE 1485 (1701)
+...+.|+....+|...+.++-.|.+ ++++.+++....+. +.+++....
T Consensus 129 ~~~n~klre~NieL~eKlkeL~eQy~----~re~hidk~~e~ke-l~~ql~~aK 177 (391)
T KOG1850|consen 129 RSKNDKLREDNIELSEKLKELGEQYE----EREKHIDKQIQKKE-LWEQLGKAK 177 (391)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-HHHHHhHHH
Confidence 44556666666666666666666555 44444444333332 555544443
No 230
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.05 E-value=0.00014 Score=96.71 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHhHHH
Q 000301 1360 IRPVLSMLREVAELANVD 1377 (1701)
Q Consensus 1360 VKPlLq~lRqe~E~~~~e 1377 (1701)
.|--|..++.+++.+..+
T Consensus 66 ~k~~l~~Le~e~~~~~~e 83 (722)
T PF05557_consen 66 LKAQLNQLEYELEQLKQE 83 (722)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 231
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=97.04 E-value=1.1 Score=52.59 Aligned_cols=46 Identities=20% Similarity=0.417 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1444 ELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLK 1492 (1701)
Q Consensus 1444 eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le 1492 (1701)
.++..+..+..+++ .........++.-.+.|.+++..++..+.+..
T Consensus 67 ~~e~~i~~~~~~v~---~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~ 112 (247)
T PF06705_consen 67 KFEEQINNMQERVE---NQISEKQEQLQSRLDSLNDRIEALEEEIQEEK 112 (247)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555544443 22334455555556666666666666655543
No 232
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.00 E-value=0.23 Score=56.96 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000301 1567 EQVARCEAYIDGMESKLQ 1584 (1701)
Q Consensus 1567 ~~i~rLE~~l~~lE~eL~ 1584 (1701)
..+++++.++..++.+.+
T Consensus 165 ~~~er~e~ki~~~ea~a~ 182 (221)
T PF04012_consen 165 DSFERMEEKIEEMEARAE 182 (221)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 233
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=97.00 E-value=0.16 Score=65.21 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1546 DEVRRLTQTVGQTEGEKREKEEQVARCEAY 1575 (1701)
Q Consensus 1546 ~el~elee~i~~lek~k~~LE~~i~rLE~~ 1575 (1701)
.++..++.++..++.+...+++++++++.+
T Consensus 317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 346 (498)
T TIGR03007 317 IELAEAEAEIASLEARVAELTARIERLESL 346 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433
No 234
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=96.98 E-value=1.2 Score=52.20 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 000301 1535 VTREEICQSLQDE 1547 (1701)
Q Consensus 1535 k~lEE~~r~Le~e 1547 (1701)
.+++.++|+++.+
T Consensus 158 l~l~~~~R~~ek~ 170 (426)
T KOG2008|consen 158 LALMGRMRQLEKK 170 (426)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 235
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.98 E-value=0.21 Score=59.85 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000301 1467 IAKLTTEKKVLQDRLHDAE 1485 (1701)
Q Consensus 1467 ~~kLq~EKk~LqerI~eLE 1485 (1701)
+.+|+.|.+.|.+++.+++
T Consensus 81 Nk~L~~Ev~~Lrqkl~E~q 99 (319)
T PF09789_consen 81 NKKLKEEVEELRQKLNEAQ 99 (319)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333
No 236
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.94 E-value=0.00047 Score=85.22 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=69.4
Q ss_pred cCcEEEEEEccccccccc---cccCcccCCccccC--CceEEEEEEecCCC--CccceEEEEEeccCCccccCCCcEEEE
Q 000301 257 LSGKFTWKVHNFSLFKEM---IKTQKIMSPVFPAG--ECNLRISVYQSSVN--GQEYLSMCLESKDMEKTVVSDRSCWCL 329 (1701)
Q Consensus 257 ~~g~f~wkI~nFS~lk~~---~k~e~i~S~~F~vg--G~~WrL~vYPnG~~--~~~yLSlyL~L~~~e~d~~~~w~v~a~ 329 (1701)
..|+++|+|.+|+..+.. +.+..++|+.|++. ||..+..+|-||++ .+.++|+|+.++.+++|..+.|++..+
T Consensus 278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~~ 357 (391)
T KOG0297|consen 278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQK 357 (391)
T ss_pred cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCCc
Confidence 368999999999654432 34568999999765 99999999998875 367999999999999999999999999
Q ss_pred EEEEEEeC
Q 000301 330 FRMSVLNQ 337 (1701)
Q Consensus 330 ftL~LLnQ 337 (1701)
++|.+++|
T Consensus 358 v~~~l~dq 365 (391)
T KOG0297|consen 358 VTLMLLDQ 365 (391)
T ss_pred eEEEEecc
Confidence 99999999
No 237
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.93 E-value=0.68 Score=56.99 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=10.5
Q ss_pred cccCCccccccccccccCCCCCC
Q 000301 903 RENGASESAQFPLFERLDSGADD 925 (1701)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~ 925 (1701)
+|+.-+---+..||..+|.-.+|
T Consensus 44 RenEsk~Tlsed~ysTldnll~D 66 (527)
T PF15066_consen 44 RENESKFTLSEDIYSTLDNLLGD 66 (527)
T ss_pred ccCcccchhhHHHHhhhhhccCC
Confidence 33333333344555555554444
No 238
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.93 E-value=0.33 Score=62.66 Aligned_cols=50 Identities=28% Similarity=0.447 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1438 FAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQ 1487 (1701)
Q Consensus 1438 L~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~q 1487 (1701)
|..+..-+..++..++.++..++.+..+.-..+..+...+++..++++..
T Consensus 279 l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~ 328 (511)
T PF09787_consen 279 LKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQ 328 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333444444444333
No 239
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.91 E-value=0.37 Score=58.15 Aligned_cols=98 Identities=20% Similarity=0.155 Sum_probs=48.6
Q ss_pred chhHHHHHHHHHHhhcCCCCCcccccchHHHHHHHHhhhccccchhHHHHHHHHHHhHHHHH----HHHHHHHhHHHHHH
Q 000301 1318 ESYRGRMLKRLVDRATSTTESSRGVDLDLEILVILVCEEQEIIRPVLSMLREVAELANVDRA----ALWHQLCASEDEII 1393 (1701)
Q Consensus 1318 ~~~~~~~~~~lv~~~~s~~~~~~ev~~~l~vL~~l~~~~~~~VKPlLq~lRqe~E~~~~e~e----~L~~klk~~e~ele 1393 (1701)
...+.+-|++=|.-..+- | .-...+||-|-.-++-=++.-+|+++.-+.--.-+..+++ .|++++.....+.+
T Consensus 41 sP~~~e~l~~rv~slsq~--N-kvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keke 117 (552)
T KOG2129|consen 41 SPSPGESLGARVSSLSQR--N-KVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKE 117 (552)
T ss_pred CCCCHHHHHHHHHHHHhh--h-hhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhcccc
Confidence 334555566555555552 2 3334556666665555556678888765432222221222 34444444433322
Q ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1394 R-----------IRDERKAEISNMVREKAVFSQKLA 1418 (1701)
Q Consensus 1394 ~-----------lrkEle~e~~~le~Ek~~L~eqLe 1418 (1701)
. +..++..++.+|..++-.|++-++
T Consensus 118 tla~~Ye~eee~lTn~Lsrkl~qLr~ek~~lEq~le 153 (552)
T KOG2129|consen 118 TLATVYEVEEEFLTNPLSRKLKQLRHEKLPLEQLLE 153 (552)
T ss_pred ccchhhhhhhhhccCchhHHHHHHHhhhccHHHHHH
Confidence 1 122233666777766666665553
No 240
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.90 E-value=1.5 Score=51.95 Aligned_cols=13 Identities=8% Similarity=0.207 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 000301 1405 NMVREKAVFSQKL 1417 (1701)
Q Consensus 1405 ~le~Ek~~L~eqL 1417 (1701)
.+..+...|.++.
T Consensus 56 ~L~~d~~~L~~k~ 68 (264)
T PF06008_consen 56 SLEQDVENLQEKA 68 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 241
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.87 E-value=1.1 Score=54.92 Aligned_cols=58 Identities=10% Similarity=-0.019 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1474 KKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYA 1531 (1701)
Q Consensus 1474 Kk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~ 1531 (1701)
...++.++.-|+.+|.++|+..+..-..+..++..+..++.....-+..++..++.+.
T Consensus 325 ~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~ 382 (554)
T KOG4677|consen 325 SAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFY 382 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHH
Confidence 4455555555555555555444433333444444444444333333444444444443
No 242
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.86 E-value=0.24 Score=62.94 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 000301 1377 DRAALWHQLCASEDEIIRIRD 1397 (1701)
Q Consensus 1377 e~e~L~~klk~~e~ele~lrk 1397 (1701)
+...+..++..++.++.+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~rL~a 118 (457)
T TIGR01000 98 QKQLLEQQLDNLKDQKKSLDT 118 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554444
No 243
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.85 E-value=0.25 Score=64.51 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=5.9
Q ss_pred cchhhHHHHH
Q 000301 1201 RHFSDIYILI 1210 (1701)
Q Consensus 1201 ~~~~d~~~l~ 1210 (1701)
..++|..-++
T Consensus 36 S~ll~al~~~ 45 (563)
T TIGR00634 36 SMIIDALSLL 45 (563)
T ss_pred HHHHHHHHHH
Confidence 5567765554
No 244
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.84 E-value=0.37 Score=57.88 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000301 1576 IDGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1576 l~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
.+-+..++..++++..-+...+
T Consensus 198 NRyL~erl~q~qeE~~l~k~~i 219 (319)
T PF09789_consen 198 NRYLKERLKQLQEEKELLKQTI 219 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444443333333333
No 245
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=96.84 E-value=0.14 Score=65.97 Aligned_cols=88 Identities=22% Similarity=0.300 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHH
Q 000301 1401 AEISNMVREKAVFSQKLAESEAAGNRLK-SEMRAEMDRFAREKKELSEQMREVESQLEWLRSERD---DEIAKLTTEKKV 1476 (1701)
Q Consensus 1401 ~e~~~le~Ek~~L~eqLee~E~al~elk-aEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~E---e~~~kLq~EKk~ 1476 (1701)
.++++|.++...|.++|.|.|.+.+... .+-.-|+..|+.-..-|+.++.|....++-++..-| ..++.+..|.++
T Consensus 394 sENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~ 473 (861)
T PF15254_consen 394 SENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKR 473 (861)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4555555556666666654333322221 122335556665556666666665555554443222 234444455555
Q ss_pred HHHHHHHHHHHH
Q 000301 1477 LQDRLHDAETQL 1488 (1701)
Q Consensus 1477 LqerI~eLE~qL 1488 (1701)
+...+.+.+.++
T Consensus 474 ~~~~~~ekd~~l 485 (861)
T PF15254_consen 474 LRKMFQEKDQEL 485 (861)
T ss_pred HHHHHHHHHHHH
Confidence 555544444433
No 246
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=96.83 E-value=1.9 Score=52.06 Aligned_cols=12 Identities=25% Similarity=0.287 Sum_probs=7.0
Q ss_pred HHHHHHhhcCCc
Q 000301 1307 LYTILLKWYPDE 1318 (1701)
Q Consensus 1307 ~y~~~f~~~~~~ 1318 (1701)
|=-.+|-+|++.
T Consensus 41 lgLVLFmVYGn~ 52 (442)
T PF06637_consen 41 LGLVLFMVYGNV 52 (442)
T ss_pred HHHHHHHhhCCc
Confidence 334577777544
No 247
>PLN03188 kinesin-12 family protein; Provisional
Probab=96.81 E-value=1.2 Score=61.14 Aligned_cols=41 Identities=24% Similarity=0.218 Sum_probs=20.7
Q ss_pred CCCCchhhhhhhhhcc-ccccchHHHHHHHHHHHHhcCCCCChh
Q 000301 1094 NDEPLAVTIDFIFKAA-SQCQHLPEAVRSVRVRLKNLGAEVSPC 1136 (1701)
Q Consensus 1094 ~~e~l~~~i~f~~~~~-~~~~~~~~~~~~~r~~l~~~~~~~~~~ 1136 (1701)
+-|.|++-|.==|+-+ ++|++. |.+..-.|+-....++-||
T Consensus 756 ~t~~laasl~rgl~ii~~h~~~~--~~~rss~~~s~~~~~~~~~ 797 (1320)
T PLN03188 756 PTEHLAASLHRGLEIIDSHRQSS--ALRRSSFRFSFKPADSKPI 797 (1320)
T ss_pred chHHHHHHHhcchHHHhhcccCc--hhhccceeccccccccccc
Confidence 4455555554444443 455532 4444445555555565555
No 248
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.81 E-value=1.4 Score=50.24 Aligned_cols=11 Identities=45% Similarity=0.619 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 000301 1619 ELETLARIHEE 1629 (1701)
Q Consensus 1619 e~e~L~~~~~~ 1629 (1701)
+-++|..+-..
T Consensus 190 En~ELtkICDe 200 (207)
T PF05010_consen 190 ENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 249
>PRK10698 phage shock protein PspA; Provisional
Probab=96.77 E-value=0.56 Score=54.16 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1505 EKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQ 1545 (1701)
Q Consensus 1505 EK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le 1545 (1701)
+|....+++..++.++...+....+|......++..+.+++
T Consensus 93 ~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 93 EKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333333333333
No 250
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=2.5 Score=52.72 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1558 TEGEKREKEEQVARCEAYIDGMESKLQACQQY 1589 (1701)
Q Consensus 1558 lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~ 1589 (1701)
+++.+..+.....+..+.+..++.+++..+..
T Consensus 387 leelk~~f~a~q~K~a~tikeL~~El~~yrr~ 418 (613)
T KOG0992|consen 387 LEELKVQFTAKQEKHAETIKELEIELEEYRRA 418 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555555566666666555543
No 251
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=96.76 E-value=1.8 Score=50.78 Aligned_cols=109 Identities=11% Similarity=0.274 Sum_probs=56.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000301 1382 WHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAA-GNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLR 1460 (1701)
Q Consensus 1382 ~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~a-l~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~ 1460 (1701)
..++....+.+.++.+.++.+..+-.+.-..|+...++.-.. ...+........+.+....+.|..++..++..+..
T Consensus 33 e~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~e-- 110 (247)
T PF06705_consen 33 EQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQE-- 110 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 444444444455555555544433333333333333211111 11222334455666666677777777777777663
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1461 SERDDEIAKLTTEKKVLQDRLHDAETQLSQLKS 1493 (1701)
Q Consensus 1461 ~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~ 1493 (1701)
+..++...++.....+..+|.++...++....
T Consensus 111 -e~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~ 142 (247)
T PF06705_consen 111 -EKEERPQDIEELNQELVRELNELQEAFENERN 142 (247)
T ss_pred -HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344445555566677777777777666443
No 252
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=96.75 E-value=2.7 Score=52.57 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhc
Q 000301 1616 SMKELETLARIHEEGLRQIHTLQQCK 1641 (1701)
Q Consensus 1616 ~~~e~e~L~~~~~~~~k~ir~lq~~~ 1641 (1701)
|..|...|+.....++.++.+.++.+
T Consensus 322 L~~Ev~~l~~~i~~L~~~L~~a~~~l 347 (384)
T PF03148_consen 322 LIEEVKELRESIEALQEKLDEAEASL 347 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888888888877776544
No 253
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=96.73 E-value=1.6 Score=49.85 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1384 QLCASEDEIIRIRDERKAEISNMVREKAVFSQKLA 1418 (1701)
Q Consensus 1384 klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLe 1418 (1701)
+..+.+.++..+.+.+.....++..++..|.....
T Consensus 12 ~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~ 46 (206)
T PF14988_consen 12 KDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYA 46 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666555555555555555555553
No 254
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.70 E-value=1.6 Score=49.62 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1502 VVKEKNALAERLKSAEAARKRFDEE 1526 (1701)
Q Consensus 1502 L~kEK~aL~eklk~lE~ei~~lEee 1526 (1701)
++-+...|..++.+++.++.++...
T Consensus 105 Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 105 LKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 255
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.70 E-value=0.42 Score=54.37 Aligned_cols=24 Identities=13% Similarity=0.534 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1425 NRLKSEMRAEMDRFAREKKELSEQ 1448 (1701)
Q Consensus 1425 ~elkaEleee~~rL~~ek~eLE~~ 1448 (1701)
.+++++++.+++.++.+..+|+.+
T Consensus 44 rE~EaelesqL~q~etrnrdl~t~ 67 (333)
T KOG1853|consen 44 REIEAELESQLDQLETRNRDLETR 67 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333
No 256
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.69 E-value=0.31 Score=65.89 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=8.8
Q ss_pred HHhhhhhhhhhhcCCC
Q 000301 1629 EGLRQIHTLQQCKGSP 1644 (1701)
Q Consensus 1629 ~~~k~ir~lq~~~~~~ 1644 (1701)
+..|-.++++...|-|
T Consensus 457 ~~i~s~~~~~~~~glp 472 (754)
T TIGR01005 457 GRAMRPAPIARFAGID 472 (754)
T ss_pred cccCCHHHHHHhcCCC
Confidence 3555555666655544
No 257
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=96.69 E-value=0.38 Score=56.72 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=16.3
Q ss_pred ChhHHHHHHHHHHHHHhhcCCch-hHHHHHHHHH
Q 000301 1297 DIRVREFVKILYTILLKWYPDES-YRGRMLKRLV 1329 (1701)
Q Consensus 1297 ~~~v~~f~~~~y~~~f~~~~~~~-~~~~~~~~lv 1329 (1701)
++-|.+|.+-=...+|.+.-.+. -|..|+.+|-
T Consensus 6 eqgvnd~Sk~ELl~LfS~lEGEleARd~VIdaLK 39 (561)
T KOG1103|consen 6 EQGVNDFSKDELLKLFSFLEGELEARDDVIDALK 39 (561)
T ss_pred hccccccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34455565555555666553332 2344555543
No 258
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=96.68 E-value=3.1 Score=52.50 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=21.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1453 ESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKS 1493 (1701)
Q Consensus 1453 E~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~ 1493 (1701)
|.++..++...+--....+.|+..+.+++..+.+.+..++.
T Consensus 239 Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk 279 (531)
T PF15450_consen 239 EERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTK 279 (531)
T ss_pred HHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence 44444444444433444455666666666666666665543
No 259
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=96.60 E-value=0.48 Score=54.66 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1505 EKNALAERLKSAEAARKRFDEELKRYATEN 1534 (1701)
Q Consensus 1505 EK~aL~eklk~lE~ei~~lEeel~kL~kE~ 1534 (1701)
++..++..++.++..+..+++..+++++..
T Consensus 93 ~~~~le~~~~~~~~~~~~~~~~~~~l~~~~ 122 (225)
T COG1842 93 EKQSLEDLAKALEAELQQAEEQVEKLKKQL 122 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 260
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.60 E-value=0.00052 Score=91.40 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1377 DRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAE 1419 (1701)
Q Consensus 1377 e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee 1419 (1701)
+...+..++..++.++..+..+.+....+++.+...++.+++.
T Consensus 62 e~~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~ 104 (722)
T PF05557_consen 62 ELIELKAQLNQLEYELEQLKQEHERAQLELEKELRELQRQLER 104 (722)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555555555543
No 261
>PLN02939 transferase, transferring glycosyl groups
Probab=96.60 E-value=0.59 Score=63.34 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1501 RVVKEKNALAERLKSAEAA---RKRFDEELKRYATENVTREEICQSLQDEVRRLTQT 1554 (1701)
Q Consensus 1501 kL~kEK~aL~eklk~lE~e---i~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~ 1554 (1701)
-++.|...|...+..+..+ ..+.++.+-++.+|...+++.+++|+.++...++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (977)
T PLN02939 230 VLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQED 286 (977)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3334444444443333333 33445555666666666666666666655444443
No 262
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=96.60 E-value=0.88 Score=59.18 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1430 EMRAEMDRFAREKKELSEQMREVESQLEWLRSER--------DDEIAKLTTEKKVLQDRLHDAETQLSQLKS 1493 (1701)
Q Consensus 1430 Eleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~--------Ee~~~kLq~EKk~LqerI~eLE~qLe~le~ 1493 (1701)
|+---++-|+.|...|.++++-|+.+|.+.+.-. .=++..||.-+-.||.++.+..+.++.++.
T Consensus 384 EIALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~ 455 (861)
T PF15254_consen 384 EIALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQS 455 (861)
T ss_pred hhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4444467777777788888888888877422211 124667777778888888887777776654
No 263
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.57 E-value=0.46 Score=60.47 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1574 AYIDGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1574 ~~l~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
.++..++.++...+.++...+.++
T Consensus 291 ~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 291 QEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 264
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=96.57 E-value=3.1 Score=51.17 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=22.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1383 HQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNR 1426 (1701)
Q Consensus 1383 ~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~e 1426 (1701)
+++.++-..+-.=+.++..+++.+.+|+..|......+|.++..
T Consensus 73 ~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~ 116 (421)
T KOG2685|consen 73 EKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERALNA 116 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555556666666666665555444444333
No 265
>PRK10698 phage shock protein PspA; Provisional
Probab=96.56 E-value=1.7 Score=50.33 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000301 1472 TEKKVLQDRLHDAETQLSQ 1490 (1701)
Q Consensus 1472 ~EKk~LqerI~eLE~qLe~ 1490 (1701)
.+|+...+++..++.++..
T Consensus 92 ~~K~~~~~~~~~l~~~~~~ 110 (222)
T PRK10698 92 IEKQKLTDLIATLEHEVTL 110 (222)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 266
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=5 Score=53.25 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1566 EEQVARCEAYIDGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1566 E~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
|++..+++..++.+..+..+.++++..+..++
T Consensus 773 e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi 804 (984)
T COG4717 773 EEELALLEEAIDALDEEVEELHAQVAALSRQI 804 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667677777777777777777777777
No 267
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=96.54 E-value=1.4 Score=57.03 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=12.1
Q ss_pred HHhhHHHHHHHHHHHHHHhhhhh
Q 000301 1613 EALSMKELETLARIHEEGLRQIH 1635 (1701)
Q Consensus 1613 e~~~~~e~e~L~~~~~~~~k~ir 1635 (1701)
..+...|.+.|++.-++.-.+|+
T Consensus 1087 k~L~ehelenLrnEieklndkIk 1109 (1424)
T KOG4572|consen 1087 KILKEHELENLRNEIEKLNDKIK 1109 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444566666665555444444
No 268
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=96.54 E-value=0.5 Score=58.64 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1508 ALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQ 1587 (1701)
Q Consensus 1508 aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q 1587 (1701)
-+.++++.+..++....+++..+.++...+.|+..+|..++-.++.+++.+..++.++...+......-+.++.++++++
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE 281 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34567777788888888888888888888888888899999999988888888888887777777777777777777777
Q ss_pred HHHHHHHHHH
Q 000301 1588 QYIHTLEAQL 1597 (1701)
Q Consensus 1588 ~~I~eLe~~l 1597 (1701)
++-+++...+
T Consensus 282 DkyAE~m~~~ 291 (596)
T KOG4360|consen 282 DKYAECMQML 291 (596)
T ss_pred HHHHHHHHHH
Confidence 7766665544
No 269
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=96.53 E-value=1.1 Score=56.78 Aligned_cols=56 Identities=16% Similarity=0.366 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1435 MDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQ 1490 (1701)
Q Consensus 1435 ~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~ 1490 (1701)
+..+..+..+++.++.+++.+++..+...+++++.+++-+.+|..+.+++-.+|-+
T Consensus 69 l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile 124 (475)
T PRK10361 69 VRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFE 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555554444444445555555555555555555544443
No 270
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.52 E-value=0.099 Score=60.33 Aligned_cols=70 Identities=16% Similarity=0.357 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1520 RKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQ 1596 (1701)
Q Consensus 1520 i~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~ 1596 (1701)
+.++..+++.|..|+....++++....++..++..+++++.++.+.+..+.++. .++..+..+|.+++..
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~-------eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY-------EEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666666666666655555555554444 4455555555555554
No 271
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=96.49 E-value=0.89 Score=53.89 Aligned_cols=30 Identities=33% Similarity=0.443 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1564 EKEEQVARCEAYIDGMESKLQACQQYIHTL 1593 (1701)
Q Consensus 1564 ~LE~~i~rLE~~l~~lE~eL~e~q~~I~eL 1593 (1701)
+....+++-++.|.++|++++++.-+|..|
T Consensus 191 eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 191 EQHSMLDKRQAYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777766555544
No 272
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=96.48 E-value=0.76 Score=58.06 Aligned_cols=87 Identities=17% Similarity=0.269 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1443 KELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKR 1522 (1701)
Q Consensus 1443 ~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~ei~~ 1522 (1701)
..||.+.-+|-+++. ++.=+...++.|+.+.++.++..|.-+.++... ....+..|+...+.+++....++..
T Consensus 170 tsLETqKlDLmaevS----eLKLkltalEkeq~e~E~K~R~se~l~qevn~~---kv~e~~~erlqye~klkstk~e~a~ 242 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVS----ELKLKLTALEKEQNETEKKLRLSENLMQEVNQS---KVGEVVQERLQYETKLKSTKGEMAP 242 (861)
T ss_pred hhHHHHHhHHHHHHH----HhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHhhcccccchhhh
Confidence 555555555555555 333345566666666667777766666655422 2334556666667777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 000301 1523 FDEELKRYATENVT 1536 (1701)
Q Consensus 1523 lEeel~kL~kE~k~ 1536 (1701)
+.|+....+.|...
T Consensus 243 L~Eq~~eK~~e~~r 256 (861)
T KOG1899|consen 243 LREQRSEKNDEEMR 256 (861)
T ss_pred HHHHHhhhhhHHHH
Confidence 77766655555433
No 273
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=96.37 E-value=4.7 Score=50.99 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1463 RDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELK-RVVKEKNALAERLKSAEAARKRFDEEL 1527 (1701)
Q Consensus 1463 ~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelk-kL~kEK~aL~eklk~lE~ei~~lEeel 1527 (1701)
.++..+++..|..+|+.++..+-+.+.---..++..+. .+++.--+++++++..|.-+...|..+
T Consensus 158 qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka~e~~rl~~E~~l 223 (531)
T PF15450_consen 158 QEEDSQKVDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKAQESSRLRTERSL 223 (531)
T ss_pred chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667888888888888888887665542222221111 345555566666666655554444443
No 274
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=96.33 E-value=1.3 Score=56.01 Aligned_cols=124 Identities=12% Similarity=0.239 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHH
Q 000301 1403 ISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTT-EKKVLQDRL 1481 (1701)
Q Consensus 1403 ~~~le~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~-EKk~LqerI 1481 (1701)
+.++..+...+..++.+.+.+++..+...+++++.|+..+++|..+.+.+-+++-+ +..+++.. .+..|..-+
T Consensus 69 l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile------~k~~~f~~~~~~~l~~ll 142 (475)
T PRK10361 69 VRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFE------HSNRRVDEQNRQSLNSLL 142 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444455555555555555555555555432 11122111 122333333
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1482 HDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYAT 1532 (1701)
Q Consensus 1482 ~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~k 1532 (1701)
.=+.++|..++...++--+.-.+++.+|.++|+.+.+.-.++..+...|.+
T Consensus 143 ~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ 193 (475)
T PRK10361 143 SPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTR 193 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433222112233455666777777666655555555555543
No 275
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=96.32 E-value=0.18 Score=58.93 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 000301 1583 LQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1583 L~e~q~~I~eLe~~l 1597 (1701)
-..+|.++..|.+.|
T Consensus 184 nk~lq~QL~~L~~EL 198 (246)
T PF00769_consen 184 NKRLQEQLKELKSEL 198 (246)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 344555565555544
No 276
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.32 E-value=1.6 Score=57.03 Aligned_cols=56 Identities=23% Similarity=0.222 Sum_probs=37.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1378 RAALWHQLCASEDEIIRIRDERK--------AEISNMVREKAVFSQKLAESEAAGNRLKSEMRA 1433 (1701)
Q Consensus 1378 ~e~L~~klk~~e~ele~lrkEle--------~e~~~le~Ek~~L~eqLee~E~al~elkaElee 1433 (1701)
+..++..+.+.+.+...+..+++ ..+++....++.|.+.++..++++..+..++.+
T Consensus 23 L~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~ 86 (660)
T KOG4302|consen 23 LQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGE 86 (660)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45556666666555554444444 566777777778888888777877777776643
No 277
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=96.30 E-value=1.6 Score=50.47 Aligned_cols=47 Identities=19% Similarity=0.461 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1441 EKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQL 1491 (1701)
Q Consensus 1441 ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~l 1491 (1701)
+++.+|..+..++..+. +..+...++......|+.+|.+++.+...+
T Consensus 93 ~~~~le~~~~~~~~~~~----~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 93 EKQSLEDLAKALEAELQ----QAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433 333334444444444444444444443333
No 278
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=96.29 E-value=1.6 Score=50.15 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1441 EKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQL 1491 (1701)
Q Consensus 1441 ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~l 1491 (1701)
++.+++.++..++.++. ..+....+|...+.+++.+|.+++.+...+
T Consensus 92 ~k~~~e~~~~~l~~~~~----~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 92 RKADLEEQAERLEQQLD----QAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 333444444444444444444444444433
No 279
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=96.28 E-value=1.2 Score=49.30 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000301 1437 RFAREKKELSEQMREVESQLE 1457 (1701)
Q Consensus 1437 rL~~ek~eLE~~l~ELE~rLe 1457 (1701)
.+...+...|.++.-+|.+|+
T Consensus 61 dl~~qL~aAEtRCslLEKQLe 81 (178)
T PF14073_consen 61 DLSSQLSAAETRCSLLEKQLE 81 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 280
>PRK10869 recombination and repair protein; Provisional
Probab=96.27 E-value=0.81 Score=59.69 Aligned_cols=11 Identities=18% Similarity=-0.121 Sum_probs=7.2
Q ss_pred ccchhhHHHHH
Q 000301 1200 TRHFSDIYILI 1210 (1701)
Q Consensus 1200 ~~~~~d~~~l~ 1210 (1701)
...++|..-++
T Consensus 35 KS~ildAi~~l 45 (553)
T PRK10869 35 KSIAIDALGLC 45 (553)
T ss_pred hHHHHHHHHHH
Confidence 35678876665
No 281
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.23 E-value=1.7 Score=58.05 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--
Q 000301 1467 IAKLTTEKKVLQDRLHDAETQLSQLKSRKR---DELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENV-TREEI-- 1540 (1701)
Q Consensus 1467 ~~kLq~EKk~LqerI~eLE~qLe~le~~kq---eelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k-~lEE~-- 1540 (1701)
..+++.|..+++.+|...+.-......++. .-.+..+.++-.++.++..++.++..+..++..+..-.. ..+++
T Consensus 469 q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~q 548 (913)
T KOG0244|consen 469 QGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQ 548 (913)
T ss_pred HhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHH
Confidence 444566666666666655544443332111 112235556666777777777777777777776666222 22333
Q ss_pred -HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1541 -CQSLQDEVRRLTQTVGQTE---GEKREKEEQVARCEAYIDGMESKLQ 1584 (1701)
Q Consensus 1541 -~r~Le~el~elee~i~~le---k~k~~LE~~i~rLE~~l~~lE~eL~ 1584 (1701)
++.++.++..++....... +.+.+-+..+.++..++..+++.-.
T Consensus 549 klk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv 596 (913)
T KOG0244|consen 549 KLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKV 596 (913)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3344555555544433222 2234445555555555555544433
No 282
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=96.23 E-value=1.7 Score=55.49 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcCCC
Q 000301 1617 MKELETLARIHEEGLRQIHTLQQCKGSP 1644 (1701)
Q Consensus 1617 ~~e~e~L~~~~~~~~k~ir~lq~~~~~~ 1644 (1701)
.++.+..++.++..+.+.++++.+...+
T Consensus 379 ~Re~~~~r~~ye~lL~r~qe~~~~~~~~ 406 (458)
T COG3206 379 EREAEAARSLYETLLQRYQELSIQEASP 406 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3666777888888888888988888444
No 283
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=96.23 E-value=3.7 Score=48.26 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1557 QTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEA 1595 (1701)
Q Consensus 1557 ~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~ 1595 (1701)
.+.+......+.+++++.++..|.++++.++.+..+.+.
T Consensus 190 ~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re 228 (258)
T PF15397_consen 190 VMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPRE 228 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 333444444444555555555555555554444444433
No 284
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=96.22 E-value=3.9 Score=48.46 Aligned_cols=8 Identities=25% Similarity=0.281 Sum_probs=4.4
Q ss_pred ccCCccCC
Q 000301 1684 IHGNGHVN 1691 (1701)
Q Consensus 1684 ~h~~g~~~ 1691 (1701)
.|-||..|
T Consensus 365 ~~~~gep~ 372 (391)
T KOG1850|consen 365 SHLEGEPK 372 (391)
T ss_pred cCCCCCcc
Confidence 35565555
No 285
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=96.21 E-value=0.22 Score=50.34 Aligned_cols=95 Identities=21% Similarity=0.170 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1503 VKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESK 1582 (1701)
Q Consensus 1503 ~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~e 1582 (1701)
+..+..++.++..++..++........|.+++..++...+.|+.+.......+..++....++...++.....+..++.+
T Consensus 8 ~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r 87 (107)
T PF09304_consen 8 EASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESR 87 (107)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444455554444444444444444444444445544444444444433334455555
Q ss_pred HHHHHHHHHHHHHHH
Q 000301 1583 LQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1583 L~e~q~~I~eLe~~l 1597 (1701)
+..++.....+|-++
T Consensus 88 ~~k~~~dka~lel~l 102 (107)
T PF09304_consen 88 LLKAQKDKAILELKL 102 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHH
Confidence 555555555555544
No 286
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=96.19 E-value=0.63 Score=55.06 Aligned_cols=83 Identities=12% Similarity=0.143 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1501 RVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGME 1580 (1701)
Q Consensus 1501 kL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE 1580 (1701)
+++.|+..++-++..+..+..+.+++...|++|....-...+.|- ++.+....+--.-.++-...|.+||..++++.
T Consensus 138 ~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~---~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm 214 (401)
T PF06785_consen 138 HLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELN---DEYQATFVEQHSMLDKRQAYIGKLESKVQDLM 214 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH---HHhhcccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666666666665322211111111 12222222222223334445666666666655
Q ss_pred HHHHHH
Q 000301 1581 SKLQAC 1586 (1701)
Q Consensus 1581 ~eL~e~ 1586 (1701)
-|++.+
T Consensus 215 ~EirnL 220 (401)
T PF06785_consen 215 YEIRNL 220 (401)
T ss_pred HHHHHH
Confidence 555443
No 287
>PF14992 TMCO5: TMCO5 family
Probab=96.19 E-value=0.13 Score=60.35 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000301 1396 RDERKAEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKK 1475 (1701)
Q Consensus 1396 rkEle~e~~~le~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk 1475 (1701)
.-+++.+..++.+.-+.+-.+++++|.++..+.+|+-.....+. +.++.+....+-+..+. +.+...++|+.+.+
T Consensus 6 n~dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~-~~e~e~~~~~~~e~~l~----~le~e~~~LE~~ne 80 (280)
T PF14992_consen 6 NMDLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIAD-RSEEEDIISEERETDLQ----ELELETAKLEKENE 80 (280)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-chhHHhhhhhchHHHHH----HHHhhhHHHhhhhH
Confidence 34445556666666666777777766666666665543322222 22333333334444443 33333455666655
Q ss_pred HHHHHHHHHHHHHHH
Q 000301 1476 VLQDRLHDAETQLSQ 1490 (1701)
Q Consensus 1476 ~LqerI~eLE~qLe~ 1490 (1701)
-+...+.++++++.+
T Consensus 81 ~l~~~~~elq~k~~e 95 (280)
T PF14992_consen 81 HLSKSVQELQRKQDE 95 (280)
T ss_pred hhhhhhhhhhhhhcc
Confidence 555556666655443
No 288
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.17 E-value=6.5 Score=53.65 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHhcCCCCCh
Q 000301 1115 LPEAVRSVRVRLKNLGAEVSP 1135 (1701)
Q Consensus 1115 ~~~~~~~~r~~l~~~~~~~~~ 1135 (1701)
+|+||+-+=.-|...|++-|-
T Consensus 164 IPRal~~IFd~Le~~~~EYsv 184 (1041)
T KOG0243|consen 164 IPRALRQIFDTLEAQGAEYSV 184 (1041)
T ss_pred chHHHHHHHHHHHhcCCeEEE
Confidence 666666666666666655443
No 289
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=96.16 E-value=1.4 Score=50.67 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 000301 1412 VFSQKLAESEA 1422 (1701)
Q Consensus 1412 ~L~eqLee~E~ 1422 (1701)
.|.+-+.+.++
T Consensus 28 ~l~q~irem~~ 38 (219)
T TIGR02977 28 MIRLIIQEMED 38 (219)
T ss_pred HHHHHHHHHHH
Confidence 34433433333
No 290
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.16 E-value=0.26 Score=65.57 Aligned_cols=7 Identities=43% Similarity=0.150 Sum_probs=2.9
Q ss_pred ceeEEEE
Q 000301 625 CELRIGV 631 (1701)
Q Consensus 625 ~~WrI~V 631 (1701)
..|-|.|
T Consensus 239 ~~~p~~v 245 (717)
T PF10168_consen 239 IEWPIFV 245 (717)
T ss_pred eeccEEE
Confidence 3454433
No 291
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.15 E-value=11 Score=53.12 Aligned_cols=11 Identities=0% Similarity=-0.194 Sum_probs=5.0
Q ss_pred hhhhhhhcCCC
Q 000301 1634 IHTLQQCKGSP 1644 (1701)
Q Consensus 1634 ir~lq~~~~~~ 1644 (1701)
++...+++...
T Consensus 491 ~~~~r~~l~~~ 501 (1042)
T TIGR00618 491 VVLARLLELQE 501 (1042)
T ss_pred HHHHHHhcCCC
Confidence 44444445543
No 292
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=96.10 E-value=0.99 Score=57.09 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000301 1475 KVLQDRLHDAETQLSQL 1491 (1701)
Q Consensus 1475 k~LqerI~eLE~qLe~l 1491 (1701)
..+..++.+++.++.++
T Consensus 257 ~~l~~~l~~le~~l~~l 273 (444)
T TIGR03017 257 QNLKTDIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555544
No 293
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=96.07 E-value=2.4 Score=54.99 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=44.6
Q ss_pred ccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1359 IIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRF 1438 (1701)
Q Consensus 1359 ~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~elkaEleee~~rL 1438 (1701)
..-.++++-.++..+...+.++....+.++..+++++..-|+.+.-..+.-++ ...+ .++.+..+-+|..++++.+
T Consensus 898 caE~i~q~kdee~altdhekeasicl~eeKDqei~EleailekQNca~eeakq--n~ei--s~Ed~kkLhaE~daeLe~~ 973 (1424)
T KOG4572|consen 898 CAECIKQMKDEEEALTDHEKEASICLIEEKDQEIEELEAILEKQNCAHEEAKQ--NDEI--SEEDKKKLHAEIDAELEKE 973 (1424)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhh--cCcc--cHHHHHHhhHHHHHHHHHH
Confidence 34455666666666666666666666777777777776666543322221111 1111 1223344445556666666
Q ss_pred HHHHHHHHH
Q 000301 1439 AREKKELSE 1447 (1701)
Q Consensus 1439 ~~ek~eLE~ 1447 (1701)
.+++.+++.
T Consensus 974 ~ael~eleq 982 (1424)
T KOG4572|consen 974 FAELIELEQ 982 (1424)
T ss_pred HHHHHHHHH
Confidence 666665554
No 294
>PF15294 Leu_zip: Leucine zipper
Probab=96.06 E-value=3.5 Score=48.81 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1563 REKEEQVARCEAYIDGMESKLQACQQYIHTLEAQ 1596 (1701)
Q Consensus 1563 ~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~ 1596 (1701)
.++++.+...+.....++..+..+...+-..+.+
T Consensus 204 ~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~Qeq 237 (278)
T PF15294_consen 204 SELEKALQDKESQQKALEETLQSCKHELLRVQEQ 237 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 3444445555555555555555554444444333
No 295
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=96.04 E-value=1.8 Score=49.91 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000301 1406 MVREKAVFSQKLAESEA 1422 (1701)
Q Consensus 1406 le~Ek~~L~eqLee~E~ 1422 (1701)
.......++.++.+.+.
T Consensus 50 ~~a~~k~~e~~~~~~~~ 66 (219)
T TIGR02977 50 TIADKKELERRVSRLEA 66 (219)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444433333
No 296
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.01 E-value=0.25 Score=55.41 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 000301 1476 VLQDRLHDAETQLS 1489 (1701)
Q Consensus 1476 ~LqerI~eLE~qLe 1489 (1701)
.+++++.+++.++.
T Consensus 99 ~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 99 QLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444443333
No 297
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.95 E-value=8.4 Score=49.93 Aligned_cols=52 Identities=19% Similarity=0.324 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1546 DEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1546 ~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
.++.++.+.+..-..++..+|+++.-+|.+...+..++........+++...
T Consensus 1059 ~RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~V 1110 (1480)
T COG3096 1059 IRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQV 1110 (1480)
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3445555556655666666777766666666666655555555445544443
No 298
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.93 E-value=0.59 Score=49.66 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1432 RAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAET 1486 (1701)
Q Consensus 1432 eee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~ 1486 (1701)
+++...+..++..+...+..+...|...+..-+++...|+.++..++.|+.+|..
T Consensus 65 r~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 65 REELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555543333334444444555555555554443
No 299
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.92 E-value=0.64 Score=53.80 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1537 REEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQ 1588 (1701)
Q Consensus 1537 lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~ 1588 (1701)
+|..+.++.-+++-.+.++.-++.+......++.+|++++..+..+|+..|.
T Consensus 79 lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 79 LEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555566666555555555555443
No 300
>PRK10869 recombination and repair protein; Provisional
Probab=95.90 E-value=4.5 Score=52.98 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHhhHHHHHHHHHHHHH
Q 000301 1565 KEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQEEMSRHAPLYGAGLEALSMKELETLARIHEE 1629 (1701)
Q Consensus 1565 LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~eE~e~h~~~~~~~Le~~~~~e~e~L~~~~~~ 1629 (1701)
.+..+.+|+.++..+..++.+..+++...+++... -|+....+++..|.--+++
T Consensus 339 ~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~-----------~l~~~v~~~L~~L~m~~a~ 392 (553)
T PRK10869 339 QEDDLETLALAVEKHHQQALETAQKLHQSRQRYAK-----------ELAQLITESMHELSMPHGK 392 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHcCCCCcE
Confidence 34445555666666666666666666666555433 2666666777777766665
No 301
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.87 E-value=0.11 Score=62.76 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcC
Q 000301 1618 KELETLARIHEEGLRQIHTLQQCKG 1642 (1701)
Q Consensus 1618 ~e~e~L~~~~~~~~k~ir~lq~~~~ 1642 (1701)
-+=.|++++...+.--+.-+-.+++
T Consensus 166 V~W~EINAA~Gq~~LLL~~la~~l~ 190 (314)
T PF04111_consen 166 VEWNEINAAWGQTALLLQTLAKKLN 190 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhC
Confidence 4677888888775555555555555
No 302
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=95.87 E-value=0.55 Score=62.04 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 000301 1467 IAKLTTEKKVLQDRLH 1482 (1701)
Q Consensus 1467 ~~kLq~EKk~LqerI~ 1482 (1701)
+..++.+++.+++++.
T Consensus 205 l~~~~~~~~~l~~~~~ 220 (670)
T KOG0239|consen 205 LKSAQEERRVLADSLG 220 (670)
T ss_pred hhhhHHHHHHHHHHhh
Confidence 3345566666666544
No 303
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=95.86 E-value=9.4 Score=49.83 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=11.1
Q ss_pred ccCCCCCCCCCCCchhHHHHH
Q 000301 994 GAVPQGCPEPRRRPQSAQKIS 1014 (1701)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~k~~ 1014 (1701)
+.+|.--||..|++.-..||=
T Consensus 133 Gh~r~a~Peg~RKKKRlrKiG 153 (828)
T PF04094_consen 133 GHKRPAQPEGGRKKKRLRKIG 153 (828)
T ss_pred CCCCCCCCccccccchhhhhc
Confidence 445555566655555445543
No 304
>PRK12704 phosphodiesterase; Provisional
Probab=95.85 E-value=1.9 Score=55.86 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhc
Q 000301 1589 YIHTLEAQLQEEMSRH 1604 (1701)
Q Consensus 1589 ~I~eLe~~l~eE~e~h 1604 (1701)
.|.++-++.+.||++|
T Consensus 283 ~iee~~~~~~~~~~~~ 298 (520)
T PRK12704 283 RIEEMVEKARKEVDEE 298 (520)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4666666666666655
No 305
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.84 E-value=0.27 Score=60.22 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=12.9
Q ss_pred chhhHHHHHHHhcCCchh
Q 000301 1202 HFSDIYILIEMLSIPCIA 1219 (1701)
Q Consensus 1202 ~~~d~~~l~~~~s~~~~~ 1219 (1701)
.-.|+|++++---++|.|
T Consensus 236 ~~~~LwicliCg~vgcgr 253 (493)
T KOG0804|consen 236 CTEDLWICLICGNVGCGR 253 (493)
T ss_pred ccccEEEEEEccceeccc
Confidence 346788888877777654
No 306
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=95.79 E-value=2.9 Score=49.64 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=7.9
Q ss_pred ccccchHHHHHHHHhhh
Q 000301 1340 RGVDLDLEILVILVCEE 1356 (1701)
Q Consensus 1340 ~ev~~~l~vL~~l~~~~ 1356 (1701)
...+-|.++|-+-+++|
T Consensus 62 ~ALqRDf~~l~Ek~D~E 78 (561)
T KOG1103|consen 62 AALQRDFAILGEKIDEE 78 (561)
T ss_pred HHHHHHHHHHhcccccc
Confidence 33444455555544443
No 307
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.75 E-value=1.4 Score=54.81 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=29.5
Q ss_pred hHHHHHHHHhhhccccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000301 1345 DLEILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERK 1400 (1701)
Q Consensus 1345 ~l~vL~~l~~~~~~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle 1400 (1701)
|.+.|..|+.+ -+-+.|.+++--..+.++.+.++.+.+-+.+...
T Consensus 63 d~d~lt~lle~-----------k~~dlElaAkiGqsllk~nk~Lq~~nesLeEqv~ 107 (596)
T KOG4360|consen 63 DIDFLTELLEE-----------KRRDLELAAKIGQSLLKANKALQEDNESLEEQVD 107 (596)
T ss_pred chHHHHHHHhc-----------ccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhhc
Confidence 45557776655 1345666666666778888888877777666555
No 308
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=3.1 Score=52.43 Aligned_cols=25 Identities=8% Similarity=-0.005 Sum_probs=13.7
Q ss_pred ccccCCCCCCCCCCCchhHHHHHHH
Q 000301 992 LDGAVPQGCPEPRRRPQSAQKISLV 1016 (1701)
Q Consensus 992 ld~~~~~~~~~~~~~~~~~~k~~~~ 1016 (1701)
+|.+|--.-|-|.||..-+.-|+.+
T Consensus 109 ~~~~~~~~L~~~~Rr~~~s~D~~E~ 133 (852)
T KOG4787|consen 109 LNAKNCRVLQFKLRKTERSRDQAEA 133 (852)
T ss_pred hcchheeeeccCccccchhhhHHHH
Confidence 3444444445666666666555554
No 309
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.68 E-value=0.87 Score=52.76 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1398 ERKAEISNMVREKAVFSQKLAESEAAGNRLKSE 1430 (1701)
Q Consensus 1398 Ele~e~~~le~Ek~~L~eqLee~E~al~elkaE 1430 (1701)
+++..+++|..|+..-+=+|+.+|+++...+..
T Consensus 22 elE~QldkLkKE~qQrQfQleSlEAaLqKQKqK 54 (307)
T PF10481_consen 22 ELEQQLDKLKKERQQRQFQLESLEAALQKQKQK 54 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344455555555555555555555554444443
No 310
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.66 E-value=3.5 Score=48.14 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1430 EMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQ 1490 (1701)
Q Consensus 1430 Eleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~ 1490 (1701)
+++.++......+.++...+.+.+.++. ......++++....+...++.+++..+..
T Consensus 82 eLeq~l~~~~~~L~~~q~~l~~~~~~l~----~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 82 ELEQRLSQEQAQLQELQEQLQQENSQLI----EIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555555555555555555554 34445555556666666666666665554
No 311
>PRK00106 hypothetical protein; Provisional
Probab=95.66 E-value=5.5 Score=51.63 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHh
Q 000301 1589 YIHTLEAQLQEEMS 1602 (1701)
Q Consensus 1589 ~I~eLe~~l~eE~e 1602 (1701)
.|+++=.+-+.||+
T Consensus 298 rIEe~v~k~~~e~~ 311 (535)
T PRK00106 298 RIEELVEKNRLEMD 311 (535)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 312
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=95.65 E-value=3 Score=46.29 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000301 1399 RKAEISNMVREKAVFSQKL 1417 (1701)
Q Consensus 1399 le~e~~~le~Ek~~L~eqL 1417 (1701)
++++|-+|+-|+..-+..+
T Consensus 9 LQeKIrrLELER~qAe~nl 27 (178)
T PF14073_consen 9 LQEKIRRLELERSQAEDNL 27 (178)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 313
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=95.63 E-value=0.52 Score=59.43 Aligned_cols=8 Identities=13% Similarity=0.439 Sum_probs=3.3
Q ss_pred HHHhhccC
Q 000301 1155 ILRDIDCD 1162 (1701)
Q Consensus 1155 ~l~~i~~~ 1162 (1701)
.++-|+..
T Consensus 106 ~~~s~eee 113 (518)
T PF10212_consen 106 QLKSLEEE 113 (518)
T ss_pred HHHHHHhh
Confidence 34444433
No 314
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.58 E-value=12 Score=48.76 Aligned_cols=11 Identities=9% Similarity=0.036 Sum_probs=5.0
Q ss_pred hhhhhhcCCCC
Q 000301 1635 HTLQQCKGSPA 1645 (1701)
Q Consensus 1635 r~lq~~~~~~~ 1645 (1701)
..|.+++.+-+
T Consensus 654 ~~ld~qI~RLs 664 (1480)
T COG3096 654 NALDEEIERLS 664 (1480)
T ss_pred HHHHHHHHHhc
Confidence 33455554443
No 315
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=95.57 E-value=3.4 Score=51.64 Aligned_cols=44 Identities=23% Similarity=0.454 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1541 CQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQ 1584 (1701)
Q Consensus 1541 ~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~ 1584 (1701)
++.+-.+.....+.+.+++....++..++.+.+.-+..++..+.
T Consensus 324 L~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~ 367 (388)
T PF04912_consen 324 LKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFK 367 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555433
No 316
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=95.57 E-value=6.1 Score=45.57 Aligned_cols=150 Identities=19% Similarity=0.165 Sum_probs=64.6
Q ss_pred CCcccccchHHHHHHHHhhhccccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000301 1337 ESSRGVDLDLEILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRI----RDERKAEISNMVREKAV 1412 (1701)
Q Consensus 1337 ~~~~ev~~~l~vL~~l~~~~~~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~l----rkEle~e~~~le~Ek~~ 1412 (1701)
.....|..+|+ ..+-.+++-.-+-.+... +..+++..++. +++.....+.-+..+ .+=+...+..|...-..
T Consensus 44 ~~A~~~~tGm~--~~~~~~~p~pk~~~~seq-~~~~~a~~elq-~~ks~~Q~e~~v~a~e~~~~rll~d~i~nLk~se~~ 119 (330)
T KOG2991|consen 44 TVAPGVRTGMI--LSMTNEEPLPKKVRLSEQ-DFKVMARDELQ-LRKSWKQYEAYVQALEGKYTRLLSDDITNLKESEEK 119 (330)
T ss_pred CCCCCCccchh--hhhccCCCCchhhhhHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHhcCcccchhHHHHHhhHHHHHH
Confidence 45667788873 334455554444344433 33334333332 222222222211111 11123566666666666
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1413 FSQKLAESEAAGNRLK---SEMRAEMDRFAREKKELSEQMREVESQLEWLRSE--RDDEIAKLTTEKKVLQDRLHDAETQ 1487 (1701)
Q Consensus 1413 L~eqLee~E~al~elk---aEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E--~Ee~~~kLq~EKk~LqerI~eLE~q 1487 (1701)
|.++++++.....-+- +..+.+++.+...++++..+..-.-.+++.+..+ ....-.+|..|.+.-...|++++..
T Consensus 120 lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~Qne 199 (330)
T KOG2991|consen 120 LKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNE 199 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7766654433222221 1113333444444444333333333333322221 2234455555555555666666655
Q ss_pred HHH
Q 000301 1488 LSQ 1490 (1701)
Q Consensus 1488 Le~ 1490 (1701)
|..
T Consensus 200 lsA 202 (330)
T KOG2991|consen 200 LSA 202 (330)
T ss_pred hhe
Confidence 554
No 317
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.44 Score=60.55 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1565 KEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1565 LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~e 1599 (1701)
.+..+..++.++..|+.+|.+....+++|+.++.+
T Consensus 472 ~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 472 KDREIRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777777777777777777776643
No 318
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.49 E-value=19 Score=50.79 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=10.2
Q ss_pred cccchhhHHHHHHHhcCC
Q 000301 1199 ATRHFSDIYILIEMLSIP 1216 (1701)
Q Consensus 1199 ~~~~~~d~~~l~~~~s~~ 1216 (1701)
|...++|...+..-..+|
T Consensus 38 GKSTildAI~~aL~G~~~ 55 (1042)
T TIGR00618 38 GKTTLLDAITYALYGKLP 55 (1042)
T ss_pred CHHHHHHHHHHHhcCCCC
Confidence 346677775555444454
No 319
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=10 Score=47.58 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1467 IAKLTTEKKVLQDRLHDAETQLSQ 1490 (1701)
Q Consensus 1467 ~~kLq~EKk~LqerI~eLE~qLe~ 1490 (1701)
++.+..|.+-+++++..+..++..
T Consensus 233 lq~~~~ehkllee~~~rl~~~~s~ 256 (613)
T KOG0992|consen 233 LQALIREHKLLEEHLERLHLQLSD 256 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555555555544443
No 320
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.44 E-value=3.9 Score=52.78 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=9.3
Q ss_pred HHHhhHHHHHHHHHHHHH
Q 000301 1612 LEALSMKELETLARIHEE 1629 (1701)
Q Consensus 1612 Le~~~~~e~e~L~~~~~~ 1629 (1701)
|+..+..++..|.-.+++
T Consensus 376 L~~~v~~eL~~L~Me~a~ 393 (557)
T COG0497 376 LEKEVTAELKALAMEKAR 393 (557)
T ss_pred HHHHHHHHHHhcCCCCce
Confidence 555555555555444444
No 321
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.38 E-value=14 Score=48.67 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1465 DEIAKLTTEKKVLQDRLHDAETQLSQ 1490 (1701)
Q Consensus 1465 e~~~kLq~EKk~LqerI~eLE~qLe~ 1490 (1701)
..+.+|++++.+.-++++++..++..
T Consensus 233 ~~v~~l~~~k~qr~~kl~~l~~~~~~ 258 (660)
T KOG4302|consen 233 KMVKKLKEEKKQRLQKLQDLRTKLLE 258 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666555666666555544
No 322
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.34 E-value=1.7 Score=51.80 Aligned_cols=18 Identities=11% Similarity=0.019 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 000301 1621 ETLARIHEEGLRQIHTLQ 1638 (1701)
Q Consensus 1621 e~L~~~~~~~~k~ir~lq 1638 (1701)
+++.++..-...-+.=+-
T Consensus 195 ~~isaALgyvahlv~lls 212 (302)
T PF10186_consen 195 EEISAALGYVAHLVSLLS 212 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444333333333
No 323
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=95.31 E-value=5.1 Score=44.03 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1550 RLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLE 1594 (1701)
Q Consensus 1550 elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe 1594 (1701)
.|+..+..+..-..+.+..+.+...-+.=|.+++......+++++
T Consensus 109 ~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~ 153 (159)
T PF05384_consen 109 ELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333333333333333344444444444444444444444443
No 324
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=95.16 E-value=3.6 Score=52.34 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=6.6
Q ss_pred HHHHHHHHHhcCc
Q 000301 1284 CVLGLAETLALSR 1296 (1701)
Q Consensus 1284 ~~l~la~~l~~s~ 1296 (1701)
++=.+-.+|+-++
T Consensus 265 aLgnvI~aLa~g~ 277 (607)
T KOG0240|consen 265 ALGNVINALAEGP 277 (607)
T ss_pred HHHHHHHHHhcCC
Confidence 3344445566555
No 325
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.15 E-value=0.52 Score=57.87 Aligned_cols=89 Identities=13% Similarity=0.183 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000301 1511 ERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQ----VARCEAYIDGMESKLQAC 1586 (1701)
Q Consensus 1511 eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~----i~rLE~~l~~lE~eL~e~ 1586 (1701)
+.++.+-.+...++.+...+.++++..|.++.+++..+.+.+.+.+.+++.-..|.+. +.+++...+.....+...
T Consensus 354 ~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~ 433 (493)
T KOG0804|consen 354 QYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSK 433 (493)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555556666666666666655555555555444444322222211 222222223333333444
Q ss_pred HHHHHHHHHHHHH
Q 000301 1587 QQYIHTLEAQLQE 1599 (1701)
Q Consensus 1587 q~~I~eLe~~l~e 1599 (1701)
.++|.+|+.|+++
T Consensus 434 d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 434 DEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHh
Confidence 4556666666655
No 326
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.13 E-value=0.24 Score=55.92 Aligned_cols=7 Identities=29% Similarity=0.472 Sum_probs=0.0
Q ss_pred HHHHHHH
Q 000301 1411 AVFSQKL 1417 (1701)
Q Consensus 1411 ~~L~eqL 1417 (1701)
..+.++|
T Consensus 91 ~el~~~L 97 (194)
T PF08614_consen 91 GELAQQL 97 (194)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3333333
No 327
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.09 E-value=0.31 Score=59.00 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1549 RRLTQTVGQTEGEKREKEEQVARCEAY 1575 (1701)
Q Consensus 1549 ~elee~i~~lek~k~~LE~~i~rLE~~ 1575 (1701)
.+.+++...++.+......++++|+..
T Consensus 109 ~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 109 IEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333444444444445555444
No 328
>PLN03188 kinesin-12 family protein; Provisional
Probab=95.07 E-value=10 Score=52.70 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000301 1538 EEICQSLQDEVRRLTQTV---GQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQEEMSR 1603 (1701)
Q Consensus 1538 EE~~r~Le~el~elee~i---~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~eE~e~ 1603 (1701)
.++.+.|+.+|+..-|.+ .++--+.++.|+...--+.+-..+|.+.+.+.++|+.|.++...||..
T Consensus 1179 ~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t 1247 (1320)
T PLN03188 1179 RDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEIST 1247 (1320)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555554444433 344445566666666666667777777777778888888877666663
No 329
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=95.05 E-value=3.6 Score=50.35 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000301 1513 LKSAEAARKRFDEELKRYATEN 1534 (1701)
Q Consensus 1513 lk~lE~ei~~lEeel~kL~kE~ 1534 (1701)
-.+++.++....+..+|++|..
T Consensus 356 rqnaekql~~Ake~~eklkKKr 377 (575)
T KOG4403|consen 356 RQNAEKQLKEAKEMAEKLKKKR 377 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHHhh
Confidence 3344455555555555555543
No 330
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.05 E-value=4.3 Score=45.20 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1467 IAKLTTEKKVLQDRLHDAETQLSQLK 1492 (1701)
Q Consensus 1467 ~~kLq~EKk~LqerI~eLE~qLe~le 1492 (1701)
-++|+.|+..+.++|++-...|..+.
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk 69 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLK 69 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776555555443
No 331
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.00 E-value=1.3 Score=45.02 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1540 ICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQAC 1586 (1701)
Q Consensus 1540 ~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~ 1586 (1701)
++.+++.++.++...+......+.+++..+.+.+..+..+|-++.+.
T Consensus 59 r~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel~l~e~ 105 (107)
T PF09304_consen 59 RIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILELKLAEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 33334444444444444322233355555555555555555555443
No 332
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=94.95 E-value=4.4 Score=50.74 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=9.1
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 000301 1381 LWHQLCASEDEIIRIRDERK 1400 (1701)
Q Consensus 1381 L~~klk~~e~ele~lrkEle 1400 (1701)
+.+++.+++.|+++++.|++
T Consensus 92 ~~~kl~RL~~Ev~EL~eEl~ 111 (388)
T PF04912_consen 92 PEQKLQRLRREVEELKEELE 111 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 333
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.93 E-value=7.9 Score=43.14 Aligned_cols=28 Identities=11% Similarity=0.299 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1499 LKRVVKEKNALAERLKSAEAARKRFDEE 1526 (1701)
Q Consensus 1499 lkkL~kEK~aL~eklk~lE~ei~~lEee 1526 (1701)
...++-+...+.++|++-..++..+...
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~ 71 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKK 71 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666655555555444444433
No 334
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=94.88 E-value=7.1 Score=45.62 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHH
Q 000301 1404 SNMVREKAVFSQKLAESEAAGNRLKSEM---RAEMDRFAREKKELSEQMREVESQLEWLRS-----ERDDEIAKLTTEKK 1475 (1701)
Q Consensus 1404 ~~le~Ek~~L~eqLee~E~al~elkaEl---eee~~rL~~ek~eLE~~l~ELE~rLe~l~~-----E~Ee~~~kLq~EKk 1475 (1701)
.+|+.++.....+|.+.+..+......+ ....+++...+.+.-.++.+++.+|..... -.+.+...++.|..
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~ 160 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELA 160 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHH
Confidence 3344444444444444444333333322 334455555555555555566555553311 12344455555555
Q ss_pred HHHHHHHHHHHHHH
Q 000301 1476 VLQDRLHDAETQLS 1489 (1701)
Q Consensus 1476 ~LqerI~eLE~qLe 1489 (1701)
.+..++..++..+.
T Consensus 161 ~l~~~~~~le~el~ 174 (240)
T PF12795_consen 161 ALEAQIEMLEQELL 174 (240)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444433
No 335
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.84 E-value=2.9 Score=49.77 Aligned_cols=10 Identities=40% Similarity=0.763 Sum_probs=4.4
Q ss_pred cCCCCcCcCC
Q 000301 1671 VGLPHSLVPN 1680 (1701)
Q Consensus 1671 ~~~~~~~~~~ 1680 (1701)
|++|-++.|.
T Consensus 217 v~Lpy~i~~~ 226 (302)
T PF10186_consen 217 VPLPYPITPS 226 (302)
T ss_pred CCCCCCcccC
Confidence 3444444444
No 336
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.84 E-value=0.64 Score=52.18 Aligned_cols=10 Identities=10% Similarity=0.245 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 000301 1547 EVRRLTQTVG 1556 (1701)
Q Consensus 1547 el~elee~i~ 1556 (1701)
++.+.+++++
T Consensus 164 e~ee~~erlk 173 (290)
T COG4026 164 EYEEVQERLK 173 (290)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 337
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.81 E-value=4.5 Score=52.46 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=10.5
Q ss_pred chhhHHHHHHHHHHHHhh
Q 000301 851 VKVLQQAIIDLLLDIMVE 868 (1701)
Q Consensus 851 v~~lq~~ii~~l~~~~~e 868 (1701)
-+.|-.||-.-|||-+|-
T Consensus 421 RDALaKaiYSkLFD~lV~ 438 (1259)
T KOG0163|consen 421 RDALAKAIYSKLFDWLVG 438 (1259)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666666666554
No 338
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=94.77 E-value=3.6 Score=50.33 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=41.1
Q ss_pred HHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1384 QLCASEDEIIRIRDERK---AEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLE 1457 (1701)
Q Consensus 1384 klk~~e~ele~lrkEle---~e~~~le~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe 1457 (1701)
.+++.|+.++.+++.++ ++.....-|+..|+.++.|+ .++.+++.-.+-+..+ .|++.+...++++|.+|+
T Consensus 253 ~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea-~rl~elreg~e~e~~r--kelE~lR~~L~kAEkele 326 (575)
T KOG4403|consen 253 GLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEA-PRLSELREGVENETSR--KELEQLRVALEKAEKELE 326 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhh-hhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 44455555555666555 34555677788888888643 2455555544443333 455666666666666665
No 339
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.68 E-value=0.88 Score=52.73 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1501 RVVKEKNALAERLKSAEAARKRFDEELKRYA 1531 (1701)
Q Consensus 1501 kL~kEK~aL~eklk~lE~ei~~lEeel~kL~ 1531 (1701)
.|..||.+..+.|+.+..+|..+|..+...+
T Consensus 43 ~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~ 73 (230)
T PF10146_consen 43 ELLQERMAHVEELRQINQDINTLENIIKQAE 73 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333333333
No 340
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.62 E-value=20 Score=46.34 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=9.1
Q ss_pred CCchhHHHHHHHh
Q 000301 758 SGDEEDIVRNLLS 770 (1701)
Q Consensus 758 ~~~~~~~f~~~l~ 770 (1701)
|++-.|-|++|.-
T Consensus 247 s~eWS~~F~~Fvd 259 (948)
T KOG0577|consen 247 SNEWSDYFRNFVD 259 (948)
T ss_pred CchhHHHHHHHHH
Confidence 5666777888764
No 341
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=94.44 E-value=24 Score=46.43 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 000301 1581 SKLQACQQYIHTLEAQLQEEMSRHAP 1606 (1701)
Q Consensus 1581 ~eL~e~q~~I~eLe~~l~eE~e~h~~ 1606 (1701)
.+...+.+...+||++- .||..+++
T Consensus 608 aeraa~~~ra~eleAre-kel~a~~~ 632 (828)
T PF04094_consen 608 AERAAMAARASELEARE-KELAARGQ 632 (828)
T ss_pred HHHHHHHHHHHHHHHHH-Hhhccccc
Confidence 33333444445555543 34554444
No 342
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=94.38 E-value=0.99 Score=60.81 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1463 RDDEIAKLTTEKKVLQDRLHDAETQLSQLKS 1493 (1701)
Q Consensus 1463 ~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~ 1493 (1701)
.....+=|+++..+++++++++|.++++.+.
T Consensus 265 a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 265 DSQSLEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666677777777777666654
No 343
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=94.38 E-value=2.7 Score=53.53 Aligned_cols=9 Identities=11% Similarity=0.135 Sum_probs=4.0
Q ss_pred HHHHHHHhh
Q 000301 1347 EILVILVCE 1355 (1701)
Q Consensus 1347 ~vL~~l~~~ 1355 (1701)
.|...|..+
T Consensus 181 ~vv~~l~~~ 189 (489)
T PF05262_consen 181 KVVQELRED 189 (489)
T ss_pred HHHHHHhhc
Confidence 344444443
No 344
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.82 Score=58.23 Aligned_cols=18 Identities=22% Similarity=0.494 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHhcCCC
Q 000301 1115 LPEAVRSVRVRLKNLGAE 1132 (1701)
Q Consensus 1115 ~~~~~~~~r~~l~~~~~~ 1132 (1701)
+.++++.++.+|+..|.+
T Consensus 166 v~~~~reIee~L~~agld 183 (652)
T COG2433 166 VKRVVREIEEKLDEAGLD 183 (652)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 667888888888888765
No 345
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=94.34 E-value=6.7 Score=48.35 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=13.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH
Q 000301 1366 MLREVAELANVDRAALWHQLCASEDEIIRIRD 1397 (1701)
Q Consensus 1366 ~lRqe~E~~~~e~e~L~~klk~~e~ele~lrk 1397 (1701)
.+.+.+..++.++....-.+.+...+.+.+.+
T Consensus 12 et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~ 43 (344)
T PF12777_consen 12 ETEEQVEEMQEELEEKQPELEEKQKEAEELLE 43 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333333333
No 346
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.32 E-value=23 Score=45.93 Aligned_cols=6 Identities=33% Similarity=0.606 Sum_probs=2.5
Q ss_pred HHHHHH
Q 000301 1322 GRMLKR 1327 (1701)
Q Consensus 1322 ~~~~~~ 1327 (1701)
+..++.
T Consensus 754 kktlKk 759 (1187)
T KOG0579|consen 754 KKTLKK 759 (1187)
T ss_pred hhHHHh
Confidence 444443
No 347
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=94.30 E-value=3.1 Score=52.84 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1563 REKEEQVARCEAYIDGMESKLQACQQYIHTLE 1594 (1701)
Q Consensus 1563 ~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe 1594 (1701)
...|.|+..+-+.+-.|..+|...+++|+.|.
T Consensus 483 ~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 483 RNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555555554
No 348
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.27 E-value=19 Score=44.72 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCCC
Q 000301 1298 IRVREFVKILYTILLKWYPDESYRGRMLKRLVDRATSTTE 1337 (1701)
Q Consensus 1298 ~~v~~f~~~~y~~~f~~~~~~~~~~~~~~~lv~~~~s~~~ 1337 (1701)
++--.|++-||..+...| ...-++.++-=+.|++.+..
T Consensus 32 ~PTs~~~~~lYe~il~~~--mgl~~~~l~~r~n~~~~~~E 69 (446)
T KOG4438|consen 32 TPTSDYVSPLYEVILEYY--MGLDEEELLQRDNEALEQLE 69 (446)
T ss_pred CCCcccchhHHHHHHHHH--HhhhHHHHhhhhHHHHhccc
Confidence 344567788888888888 45556666666666766533
No 349
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.23 E-value=0.82 Score=56.32 Aligned_cols=98 Identities=18% Similarity=0.188 Sum_probs=45.9
Q ss_pred hccccchhHHHH-HHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1356 EQEIIRPVLSML-REVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKSEMRAE 1434 (1701)
Q Consensus 1356 ~~~~VKPlLq~l-Rqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~elkaEleee 1434 (1701)
|-++|-|-|++. |.+. ++=+.=.++.+.....+.....+....+.++..++..-.+++...|.-+.+....+-.+
T Consensus 199 EvERV~PqLKv~~~~d~----kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~e 274 (359)
T PF10498_consen 199 EVERVLPQLKVTIRADA----KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQE 274 (359)
T ss_pred HHHHHhhhheeeccCCc----chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 446899999753 2221 22222233344444444444444445555555555555555544444444433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1435 MDRFAREKKELSEQMREVESQLE 1457 (1701)
Q Consensus 1435 ~~rL~~ek~eLE~~l~ELE~rLe 1457 (1701)
....+.++.++..+.+++...+.
T Consensus 275 Yr~~~~~ls~~~~~y~~~s~~V~ 297 (359)
T PF10498_consen 275 YRSAQDELSEVQEKYKQASEGVS 297 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHH
Confidence 44444444444444444444444
No 350
>PF14992 TMCO5: TMCO5 family
Probab=94.19 E-value=1.2 Score=52.59 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1551 LTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1551 lee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
.+.++.++......++.++++++.....+-.--++.-..|..++..+
T Consensus 114 sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L 160 (280)
T PF14992_consen 114 SKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKL 160 (280)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555554332222111222333445555555
No 351
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.03 E-value=5.8 Score=52.37 Aligned_cols=12 Identities=8% Similarity=0.230 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 000301 1406 MVREKAVFSQKL 1417 (1701)
Q Consensus 1406 le~Ek~~L~eqL 1417 (1701)
|+.+.+.|.+++
T Consensus 434 Le~elekLk~ei 445 (762)
T PLN03229 434 LEGEVEKLKEQI 445 (762)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 352
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.98 E-value=8.7 Score=43.64 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhHHH
Q 000301 1377 DRAALWHQLCASED 1390 (1701)
Q Consensus 1377 e~e~L~~klk~~e~ 1390 (1701)
++.=|..++++.+.
T Consensus 11 EIsLLKqQLke~q~ 24 (202)
T PF06818_consen 11 EISLLKQQLKESQA 24 (202)
T ss_pred hHHHHHHHHHHHHH
Confidence 33333333443333
No 353
>PF15294 Leu_zip: Leucine zipper
Probab=93.89 E-value=9.9 Score=45.21 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000301 1577 DGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1577 ~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
+.|..-+..-..+|.+|++++
T Consensus 256 ~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 256 RNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred HHhHHHHHhccHHHHHHHHHh
Confidence 344444444455666665554
No 354
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.83 E-value=10 Score=44.11 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=16.9
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHH
Q 000301 1369 EVAELANVDRAALWHQLCASEDEIIRIRDE 1398 (1701)
Q Consensus 1369 qe~E~~~~e~e~L~~klk~~e~ele~lrkE 1398 (1701)
+++..++.+..++.++...+-+.+..++.+
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~Qd 38 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQD 38 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 345555556666666666665555555553
No 355
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.81 E-value=2.3 Score=44.53 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1501 RVVKEKNALAERLKSAEAARKRFDEELKRYATE 1533 (1701)
Q Consensus 1501 kL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE 1533 (1701)
+++.|+..+..++..++.++..+.+++-++..+
T Consensus 27 ~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 27 RLEGELASLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444554444443
No 356
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=93.78 E-value=2.1 Score=52.31 Aligned_cols=20 Identities=35% Similarity=0.410 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000301 1473 EKKVLQDRLHDAETQLSQLK 1492 (1701)
Q Consensus 1473 EKk~LqerI~eLE~qLe~le 1492 (1701)
.+.+.++++.+++..+++.+
T Consensus 7 ~~s~~dqr~~~~~~~laq~~ 26 (459)
T KOG0288|consen 7 QKSENDQRLIDLNTELAQCE 26 (459)
T ss_pred hhhhhhhHHHHHHHHHHHHH
Confidence 34444455555555554443
No 357
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=93.77 E-value=15 Score=47.24 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1465 DEIAKLTTEKKVLQDRLHDAETQL 1488 (1701)
Q Consensus 1465 e~~~kLq~EKk~LqerI~eLE~qL 1488 (1701)
+..+.+.++...|++++.+...++
T Consensus 414 ~~~~~~~e~~~~L~qqlD~kd~~~ 437 (607)
T KOG0240|consen 414 EEEDILTERIESLYQQLDQKDDQI 437 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 358
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=93.71 E-value=12 Score=47.85 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1573 EAYIDGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1573 E~~l~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
+.+++.|+-+++..+.-.+.+-.+.
T Consensus 372 ~~~l~~L~Re~~~~r~~ye~lL~r~ 396 (458)
T COG3206 372 QVQLRELEREAEAARSLYETLLQRY 396 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 359
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=93.70 E-value=8.2 Score=45.77 Aligned_cols=19 Identities=11% Similarity=0.102 Sum_probs=10.3
Q ss_pred HHHHhhhhhhhhhhcCCCC
Q 000301 1627 HEEGLRQIHTLQQCKGSPA 1645 (1701)
Q Consensus 1627 ~~~~~k~ir~lq~~~~~~~ 1645 (1701)
.++.+.+++-|+..+..++
T Consensus 145 keK~klRLK~LEe~Lk~~~ 163 (351)
T PF07058_consen 145 KEKLKLRLKVLEEGLKGSS 163 (351)
T ss_pred HHHHHHHHHHHHhhccCCC
Confidence 3445555666666555443
No 360
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.68 E-value=38 Score=46.04 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCCC
Q 000301 1618 KELETLARIHEEGLRQIHTLQQCKGSPAASPLVS 1651 (1701)
Q Consensus 1618 ~e~e~L~~~~~~~~k~ir~lq~~~~~~~~~~~~~ 1651 (1701)
+...-|...++=..++|..+|.++.....-++..
T Consensus 733 k~l~~L~~~~~~~~~~i~s~~~~i~~a~~d~~~~ 766 (913)
T KOG0244|consen 733 KLLGSLEPVMELTSDQISSMQDLIITASKDERIK 766 (913)
T ss_pred HHHhhhHHHHHHHHHHHHhHHhhhcccccchhHH
Confidence 5555666666668899999999988766544433
No 361
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.62 E-value=7.8 Score=44.00 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1522 RFDEELKRYATENVTREEICQSLQDEVRRLTQTV 1555 (1701)
Q Consensus 1522 ~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i 1555 (1701)
..+.++.+...|...+.+....++.++..+++..
T Consensus 70 ~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l 103 (202)
T PF06818_consen 70 VCENELQRKKNEAELLREKLGQLEAELAELREEL 103 (202)
T ss_pred HhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHH
Confidence 3333344443333333333333444444443333
No 362
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.58 E-value=3.3 Score=44.90 Aligned_cols=9 Identities=11% Similarity=0.309 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 000301 1409 EKAVFSQKL 1417 (1701)
Q Consensus 1409 Ek~~L~eqL 1417 (1701)
....|..++
T Consensus 74 ~~~rL~~~~ 82 (151)
T PF11559_consen 74 DVERLKEQL 82 (151)
T ss_pred HHHHHHHHH
Confidence 333333333
No 363
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=93.57 E-value=7.1 Score=45.32 Aligned_cols=37 Identities=38% Similarity=0.315 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1563 REKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1563 ~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~e 1599 (1701)
...++..++-+.+.++-+.+|.++.+.|.+|+.++.+
T Consensus 382 f~fekieareerrkqkeeeklk~e~qkikeleek~~e 418 (445)
T KOG2891|consen 382 FEFEKIEAREERRKQKEEEKLKAEEQKIKELEEKIKE 418 (445)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666777777777777776655
No 364
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=93.56 E-value=19 Score=47.60 Aligned_cols=26 Identities=4% Similarity=0.075 Sum_probs=12.4
Q ss_pred hhHHHhhhcchhhHHHHHHHHHHHHh
Q 000301 842 PSVMNLLMGVKVLQQAIIDLLLDIMV 867 (1701)
Q Consensus 842 ~sl~~ll~~v~~lq~~ii~~l~~~~~ 867 (1701)
+.+..++..--+.-..+++.+++.++
T Consensus 30 ~~f~d~f~~~vP~~e~lv~~~e~~~~ 55 (582)
T PF09731_consen 30 DNFRDFFEEYVPYGEELVDYIEEEES 55 (582)
T ss_pred hHHHHHHHHhCCcHHHHHHHHhhhcc
Confidence 33444444444444555555555543
No 365
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=93.55 E-value=40 Score=45.97 Aligned_cols=17 Identities=6% Similarity=0.259 Sum_probs=11.8
Q ss_pred cccccchHHHHHHHHhh
Q 000301 1339 SRGVDLDLEILVILVCE 1355 (1701)
Q Consensus 1339 ~~ev~~~l~vL~~l~~~ 1355 (1701)
.+.+...||+|--+|.+
T Consensus 1010 A~~AK~QMDaIKqmIek 1026 (1439)
T PF12252_consen 1010 ARQAKAQMDAIKQMIEK 1026 (1439)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555568888887766
No 366
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.51 E-value=32 Score=44.63 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=13.0
Q ss_pred hhHHHhhhcchhhHHHHHHHHHHHHhhhcCC
Q 000301 842 PSVMNLLMGVKVLQQAIIDLLLDIMVECCQP 872 (1701)
Q Consensus 842 ~sl~~ll~~v~~lq~~ii~~l~~~~~e~~~~ 872 (1701)
+-||.|+-..|--=.-+=++=..||-..++-
T Consensus 288 tvi~dLIqRTKdaVrELDNlqYrKMkKilf~ 318 (948)
T KOG0577|consen 288 TVIMDLIQRTKDAVRELDNLQYRKMKKILFQ 318 (948)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 3345554443322222233344555555543
No 367
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=93.46 E-value=26 Score=43.54 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=28.7
Q ss_pred HHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1380 ALWHQLCAS---EDEIIRIRDERKAEISNMVREKAVFSQKLAESEA 1422 (1701)
Q Consensus 1380 ~L~~klk~~---e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~ 1422 (1701)
++.++++.. ..++....+++..++..|..++..|+..|....-
T Consensus 74 ~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~ 119 (421)
T KOG2685|consen 74 KLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERALNALAL 119 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555554 4566666666667888888888888888755443
No 368
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.35 E-value=2.2 Score=48.18 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1544 LQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLE 1594 (1701)
Q Consensus 1544 Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe 1594 (1701)
|..++.+++.++++.+.+..+++....+|+..++.+.++..+++....+|+
T Consensus 154 L~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 154 LLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 333444444444444444444444444444444444444444444443333
No 369
>PRK11519 tyrosine kinase; Provisional
Probab=93.26 E-value=2.2 Score=57.56 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1463 RDDEIAKLTTEKKVLQDRLHDAETQLSQLKS 1493 (1701)
Q Consensus 1463 ~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~ 1493 (1701)
.+...+-|+++..+++++++++|.++++.+.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566777777777777777777777653
No 370
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=93.21 E-value=7.5 Score=46.98 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1465 DEIAKLTTEKKVLQDRLHDAETQLSQLK 1492 (1701)
Q Consensus 1465 e~~~kLq~EKk~LqerI~eLE~qLe~le 1492 (1701)
.++.+|-.|+++|.++|+.++.+|++..
T Consensus 219 vRLkKl~~eke~L~~qv~klk~qLee~~ 246 (302)
T PF09738_consen 219 VRLKKLADEKEELLEQVRKLKLQLEERQ 246 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888877643
No 371
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=93.15 E-value=1.7 Score=45.84 Aligned_cols=83 Identities=14% Similarity=0.298 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1406 MVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAE 1485 (1701)
Q Consensus 1406 le~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE 1485 (1701)
|..-.+.+.++|++.-++++..+.++..+++++...+++..+..+.+.+++. +..+.++.+..+.+.++..++.|+
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~----~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVT----EVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444556666676666777777777777888888888777777777777776 455666677777777888888888
Q ss_pred HHHHHHH
Q 000301 1486 TQLSQLK 1492 (1701)
Q Consensus 1486 ~qLe~le 1492 (1701)
.+|.+++
T Consensus 117 ~ki~~ie 123 (126)
T PF07889_consen 117 GKIDEIE 123 (126)
T ss_pred HHHHHHh
Confidence 7777665
No 372
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=93.14 E-value=21 Score=41.46 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000301 1467 IAKLTTEKKVLQDRLHDAETQ 1487 (1701)
Q Consensus 1467 ~~kLq~EKk~LqerI~eLE~q 1487 (1701)
+..-+.|..++..+|++++.+
T Consensus 138 lA~kEQEmqe~~sqi~~lK~q 158 (330)
T KOG2991|consen 138 LATKEQEMQECTSQIQYLKQQ 158 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555544
No 373
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=93.06 E-value=1 Score=54.51 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1520 RKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQ 1598 (1701)
Q Consensus 1520 i~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~ 1598 (1701)
|..+.++..+.+...+.+..+..-+.+.++.-.++.+++|.-+.+|+.-..+....+.+.|.+.+.+++.-.-||.+++
T Consensus 127 ItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr 205 (558)
T PF15358_consen 127 ITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLR 205 (558)
T ss_pred hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHH
Confidence 4444555555555555555555555555555555555555555555555555555666666666666655555555553
No 374
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=93.04 E-value=23 Score=41.61 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1577 DGMESKLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1577 ~~lE~eL~e~q~~I~eLe~~l~e 1599 (1701)
...+..|+.....+..|+.++..
T Consensus 180 ~~~~~~l~~~k~~v~~Le~~v~~ 202 (239)
T PF05276_consen 180 AKFNQQLEEQKEKVEELEAKVKQ 202 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555566555543
No 375
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.03 E-value=35 Score=44.46 Aligned_cols=11 Identities=18% Similarity=0.009 Sum_probs=6.5
Q ss_pred cchhhHHHHHH
Q 000301 1201 RHFSDIYILIE 1211 (1701)
Q Consensus 1201 ~~~~d~~~l~~ 1211 (1701)
.=++|..-|+.
T Consensus 36 SIiidAl~lll 46 (557)
T COG0497 36 SIIIDALGLLL 46 (557)
T ss_pred hHHHHHHHHHh
Confidence 44677666554
No 376
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=92.97 E-value=0.69 Score=61.13 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=1.7
Q ss_pred HHHHHHHHHHHH
Q 000301 1522 RFDEELKRYATE 1533 (1701)
Q Consensus 1522 ~lEeel~kL~kE 1533 (1701)
..|.++++++.+
T Consensus 327 ~hE~Ei~~Lk~~ 338 (619)
T PF03999_consen 327 LHEEEIERLKEE 338 (619)
T ss_dssp --------HHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 377
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.97 E-value=3.4 Score=48.53 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000301 1512 RLKSAEAARKRFDEELKRYATE 1533 (1701)
Q Consensus 1512 klk~lE~ei~~lEeel~kL~kE 1533 (1701)
++.+..++...+..++..+.+|
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e 64 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLERE 64 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 378
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=92.95 E-value=45 Score=44.85 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=31.2
Q ss_pred CcChhHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCCCCcccccchHHHHHHHHhhh
Q 000301 1295 SRDIRVREFVKILYTILLKWYPDESYRGRMLKRLVDRATSTTESSRGVDLDLEILVILVCEE 1356 (1701)
Q Consensus 1295 s~~~~v~~f~~~~y~~~f~~~~~~~~~~~~~~~lv~~~~s~~~~~~ev~~~l~vL~~l~~~~ 1356 (1701)
+.=..|+.-...+. .++.|| +-..+||.+| +++..+||-+|-=|..||...
T Consensus 26 ~~~~~~~a~~~~~~-qi~~Wi---~k~k~~l~~L-------~~~l~~ID~ai~~~l~lIe~~ 76 (683)
T PF08580_consen 26 TAFNAVKALSGAAE-QILDWI---QKAKDVLYGL-------REGLEEIDSAISRFLDLIEVY 76 (683)
T ss_pred hhHHHHHhhHHHHH-HHHHHH---HHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHhh
Confidence 33344444444444 445777 3448999999 335677888876677766664
No 379
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=92.88 E-value=42 Score=44.88 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=30.3
Q ss_pred chhHHHHHHHhccCCCCcchhHHhhcc----ccccCCCchHHHHHHHHHhccCCCCCccchhHHhhh
Q 000301 1007 PQSAQKISLVLDKAPKHLQPDLVALVP----KLVEHSEHPLAADALIERLQKSDAEPALRMPVFVAL 1069 (1701)
Q Consensus 1007 ~~~~~k~~~~l~~~p~~lq~d~i~~~p----~~~~~~~h~~~a~~l~~~l~~~~~~~~l~~p~~~al 1069 (1701)
|+-..|++.++..| ....-=||+|+= .+=..+|..-.+.++-.+|..- .++++|++.++
T Consensus 225 peGyRKAlRlmkLA-ekfgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~am---asl~VP~ISVV 287 (762)
T PLN03229 225 PHGYRKALRMMYYA-DHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTM---FGLKVPIVSIV 287 (762)
T ss_pred HHHHHHHHHHHHHH-HHcCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHH---hCCCCCEEEEE
Confidence 45667777777666 444444444430 0112233333345555555542 46778877665
No 380
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=92.83 E-value=6.3 Score=43.16 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=31.1
Q ss_pred HHHHHHhhhccccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1348 ILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVRE 1409 (1701)
Q Consensus 1348 vL~~l~~~~~~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~E 1409 (1701)
+|..++.- =+.+|+.+++++........++...+ ..++.+.++++.+.++.+...+
T Consensus 22 ILy~ll~k--f~~ppI~~iLe~R~~~I~~~L~~Ae~----~k~eAe~l~a~ye~~L~~Ar~e 77 (155)
T PRK06569 22 LLYIFVYK--FITPKAEEIFNNRQTNIQDNITQADT----LTIEVEKLNKYYNEEIDKTNTE 77 (155)
T ss_pred HHHHHHHH--HhHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 57899999999888776666663332 2333344444444444443333
No 381
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=92.82 E-value=15 Score=49.02 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=15.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000301 1381 LWHQLCASEDEIIRIRDERKAEISNMV 1407 (1701)
Q Consensus 1381 L~~klk~~e~ele~lrkEle~e~~~le 1407 (1701)
..+.+++.+.++..|++.-+.+...+.
T Consensus 944 ~~Kl~kr~eKeL~~LrKkh~k~~~~l~ 970 (1189)
T KOG1265|consen 944 FVKLLKRHEKELRDLRKKHQKERDTLQ 970 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 455566666677777774444444333
No 382
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=92.81 E-value=21 Score=40.70 Aligned_cols=16 Identities=31% Similarity=0.518 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 000301 1441 EKKELSEQMREVESQL 1456 (1701)
Q Consensus 1441 ek~eLE~~l~ELE~rL 1456 (1701)
++..+|.++..-|..|
T Consensus 79 el~~~E~rl~~rE~~L 94 (201)
T PF12072_consen 79 ELQRLEKRLQQREEQL 94 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 383
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.80 E-value=5.7 Score=43.06 Aligned_cols=7 Identities=0% Similarity=0.202 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 000301 1619 ELETLAR 1625 (1701)
Q Consensus 1619 e~e~L~~ 1625 (1701)
++-++..
T Consensus 138 ke~E~~k 144 (151)
T PF11559_consen 138 KEREIEK 144 (151)
T ss_pred HHHHHHH
Confidence 3333333
No 384
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.79 E-value=4.3 Score=50.17 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1465 DEIAKLTTEKKVLQDRLHDAETQL 1488 (1701)
Q Consensus 1465 e~~~kLq~EKk~LqerI~eLE~qL 1488 (1701)
..+.++..+..+.-++|..-|..|
T Consensus 241 ~~L~kl~~~i~~~lekI~sREk~i 264 (359)
T PF10498_consen 241 SQLDKLQQDISKTLEKIESREKYI 264 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 385
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.61 E-value=11 Score=47.82 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=6.9
Q ss_pred ccchhHHHHHHH
Q 000301 1359 IIRPVLSMLREV 1370 (1701)
Q Consensus 1359 ~VKPlLq~lRqe 1370 (1701)
|+|-|+..++..
T Consensus 531 f~k~i~s~lqrs 542 (741)
T KOG4460|consen 531 FEKHIRSILQRS 542 (741)
T ss_pred HHHHHHHhhhhh
Confidence 666666555543
No 386
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=92.61 E-value=7.4 Score=43.45 Aligned_cols=17 Identities=6% Similarity=0.089 Sum_probs=8.4
Q ss_pred ccccchHHHHHHHHhhh
Q 000301 1340 RGVDLDLEILVILVCEE 1356 (1701)
Q Consensus 1340 ~ev~~~l~vL~~l~~~~ 1356 (1701)
.+...=+++|..++.+.
T Consensus 19 ~QAe~i~~~l~~~l~~~ 35 (177)
T PF07798_consen 19 EQAEAIMKALREVLNDS 35 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555555543
No 387
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=92.47 E-value=29 Score=41.92 Aligned_cols=9 Identities=33% Similarity=0.383 Sum_probs=4.2
Q ss_pred Hhhhhhhhh
Q 000301 1630 GLRQIHTLQ 1638 (1701)
Q Consensus 1630 ~~k~ir~lq 1638 (1701)
.+++|.+||
T Consensus 289 l~~ei~~L~ 297 (297)
T PF02841_consen 289 LQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcC
Confidence 444454443
No 388
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.27 E-value=4.2 Score=46.00 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1541 CQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1541 ~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~e 1599 (1701)
.++++.++.+++.++.+++.+...+.........++..+++..+.+.+.+...+.+++.
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555666666666666666666666666644
No 389
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=92.08 E-value=8.1 Score=43.72 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000301 1438 FAREKKELSEQMREVESQLEWLRSERDDEIAKLTTE 1473 (1701)
Q Consensus 1438 L~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~E 1473 (1701)
...+..++..++..++.+|-....+.++++..++.+
T Consensus 80 ~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~ 115 (196)
T PF15272_consen 80 SSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDE 115 (196)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333444555555555555532222333333333333
No 390
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=92.04 E-value=30 Score=44.19 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1514 KSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQ 1588 (1701)
Q Consensus 1514 k~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~ 1588 (1701)
.+|-.+-.++-+.-+.|+--+..+-....+|..+-.-|+.++......+.+|++++.++|+++.++.+++.+.++
T Consensus 304 eNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~ 378 (832)
T KOG2077|consen 304 ENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQ 378 (832)
T ss_pred HHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444456666666677777777778888888888888888888887777654
No 391
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=91.99 E-value=42 Score=42.18 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000301 1536 TREEICQSLQDEVRRLTQTV---GQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQEEMSRH 1604 (1701)
Q Consensus 1536 ~lEE~~r~Le~el~elee~i---~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~eE~e~h 1604 (1701)
-+.++.+.|+.++.+.-+.+ +++--+.++.|....--+.+...++.+.+.+..+|..|.++..-||...
T Consensus 407 ~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~ 478 (488)
T PF06548_consen 407 FLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTM 478 (488)
T ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555554443 3444455666666666677777788888888888888888776666543
No 392
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=91.99 E-value=18 Score=40.73 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000301 1435 MDRFAREKKELSEQMREVESQL 1456 (1701)
Q Consensus 1435 ~~rL~~ek~eLE~~l~ELE~rL 1456 (1701)
+.+|+....+...++.++|.++
T Consensus 18 v~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 18 VQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555
No 393
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=91.96 E-value=0.09 Score=65.42 Aligned_cols=82 Identities=18% Similarity=0.321 Sum_probs=71.0
Q ss_pred CCccceEEEEEEeccccCCC-------ceeecCcEEE--cCeeEEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCceE
Q 000301 88 RGEHSAVCRWTVHNFPRIRA-------RALWSKYFEV--GGYDCRLLVYPKGDSQALPGYISIYLQIMDPRGTSSSKWDC 158 (1701)
Q Consensus 88 ~~~~~~~~tw~I~nfS~lk~-------~~~~Sp~F~v--GG~~WrL~vyP~G~~~~~~~~LSvYL~~~~~~~~~~~~W~v 158 (1701)
...+.+++.|+|.+|...+. ..++|+.|+. +||.-+..+|-+|++.+.+.++|+|+.+..++.+....|.+
T Consensus 275 ~~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf 354 (391)
T KOG0297|consen 275 VRSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPF 354 (391)
T ss_pred hhccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCC
Confidence 33468899999999955432 4799999974 99999999999999877788999999999998777888999
Q ss_pred EEEEEEEEEec
Q 000301 159 FASYRLAIVNL 169 (1701)
Q Consensus 159 ~a~f~l~Lvn~ 169 (1701)
.-.++|.++++
T Consensus 355 ~~~v~~~l~dq 365 (391)
T KOG0297|consen 355 RQKVTLMLLDQ 365 (391)
T ss_pred CCceEEEEecc
Confidence 99999999999
No 394
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=91.84 E-value=10 Score=41.66 Aligned_cols=31 Identities=10% Similarity=0.183 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCC
Q 000301 1303 FVKILYTILLKWYPDESYRGRMLKRLVDRATST 1335 (1701)
Q Consensus 1303 f~~~~y~~~f~~~~~~~~~~~~~~~lv~~~~s~ 1335 (1701)
-.+.+|+-.=++- +-|=.++|.+|+-.+.+.
T Consensus 4 lA~~Ig~EfE~lI--d~~G~e~v~~LmP~VV~v 34 (158)
T PF09744_consen 4 LASSIGKEFERLI--DRYGEEAVKGLMPKVVRV 34 (158)
T ss_pred HHHHHHHHHHHHH--HHhChhHHHHHHHHHHHH
Confidence 3344444433333 333456777777777664
No 395
>PRK11519 tyrosine kinase; Provisional
Probab=91.83 E-value=6.3 Score=53.25 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhh
Q 000301 1321 RGRMLKRLVDRA 1332 (1701)
Q Consensus 1321 ~~~~~~~lv~~~ 1332 (1701)
+++++..|-.++
T Consensus 207 ~~~~~~~l~~~l 218 (719)
T PRK11519 207 TLGMINNLQNNL 218 (719)
T ss_pred HHHHHHHHHhcc
Confidence 456666666654
No 396
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.83 E-value=38 Score=43.35 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=43.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1381 LWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGN-----RL---KSEMRAEMDRFAREKKELSEQMREV 1452 (1701)
Q Consensus 1381 L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~-----el---kaEleee~~rL~~ek~eLE~~l~EL 1452 (1701)
...+++.++.+++.+.. ++++++.+.+.|..+|.+.+.+-. +. -.|+.+..++....+.-+-.+.+++
T Consensus 330 ~~~Q~~~~~~~~~~~~T----r~Er~Er~~D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~ 405 (852)
T KOG4787|consen 330 AHLQLELAESQVQHLNT----KIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELE 405 (852)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHH
Confidence 34455555555555544 788888888889999977766311 11 1244555555555555555555555
Q ss_pred HHHHH
Q 000301 1453 ESQLE 1457 (1701)
Q Consensus 1453 E~rLe 1457 (1701)
+..++
T Consensus 406 ~~~~~ 410 (852)
T KOG4787|consen 406 RKNLE 410 (852)
T ss_pred Hhccc
Confidence 55544
No 397
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=91.78 E-value=11 Score=47.45 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000301 1576 IDGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1576 l~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
+..++.++.+.+.++..++.++
T Consensus 229 ~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 229 LETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555444444
No 398
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=91.75 E-value=10 Score=48.63 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=8.3
Q ss_pred chhHHHHHHHHHH
Q 000301 1361 RPVLSMLREVAEL 1373 (1701)
Q Consensus 1361 KPlLq~lRqe~E~ 1373 (1701)
+.+.+.||.+.+.
T Consensus 180 ~~vv~~l~~~~dk 192 (489)
T PF05262_consen 180 EKVVQELREDKDK 192 (489)
T ss_pred HHHHHHHhhcccc
Confidence 4666777766554
No 399
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=91.62 E-value=14 Score=43.80 Aligned_cols=89 Identities=15% Similarity=0.193 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1509 LAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQ 1588 (1701)
Q Consensus 1509 L~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~ 1588 (1701)
+.+.++.+..++...+..+..+..+...++..+++...++++.+.++..++.-+-..-+.-+++|.++.++-..--+.=.
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfR 246 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFR 246 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666677777777777777777777777777777777778877777777777777776666555444444
Q ss_pred HHHHHHHHH
Q 000301 1589 YIHTLEAQL 1597 (1701)
Q Consensus 1589 ~I~eLe~~l 1597 (1701)
.+.-|+.++
T Consensus 247 Nl~yLe~ql 255 (267)
T PF10234_consen 247 NLDYLEHQL 255 (267)
T ss_pred hHHHHHHHH
Confidence 444555544
No 400
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.59 E-value=7.5 Score=40.85 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000301 1469 KLTTEKKVLQDRLHDAETQ 1487 (1701)
Q Consensus 1469 kLq~EKk~LqerI~eLE~q 1487 (1701)
+|+..++.++.++..++.+
T Consensus 20 ~L~s~lr~~E~E~~~l~~e 38 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEE 38 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 401
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=91.55 E-value=6.6 Score=53.14 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhc
Q 000301 1321 RGRMLKRLVDRAT 1333 (1701)
Q Consensus 1321 ~~~~~~~lv~~~~ 1333 (1701)
+++++..|..++.
T Consensus 207 ~~~~~~~l~~~l~ 219 (726)
T PRK09841 207 ELEAINALQETFT 219 (726)
T ss_pred HHHHHHHHHhcCe
Confidence 4566777766654
No 402
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=91.35 E-value=12 Score=42.28 Aligned_cols=21 Identities=10% Similarity=0.265 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000301 1577 DGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1577 ~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
..|++++.+--.-|..|+++.
T Consensus 146 K~LhaqI~EKDAmIkVLQqrs 166 (205)
T PF12240_consen 146 KALHAQIAEKDAMIKVLQQRS 166 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333333333333344444433
No 403
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=91.30 E-value=28 Score=41.21 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCchh
Q 000301 1577 DGMESKLQACQQYIHTLEAQLQEEMSRHAPLYG 1609 (1701)
Q Consensus 1577 ~~lE~eL~e~q~~I~eLe~~l~eE~e~h~~~~~ 1609 (1701)
++++.++..++++-..|-..+.+=++.|.|+..
T Consensus 157 ~el~~K~~~~k~~~e~Ll~~LgeFLeeHfPlp~ 189 (268)
T PF11802_consen 157 QELKTKIEKIKEYKEKLLSFLGEFLEEHFPLPD 189 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 344444555555566666666666778999644
No 404
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=91.26 E-value=2.7 Score=54.86 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=8.5
Q ss_pred HhhhccccchhHHHHH
Q 000301 1353 VCEEQEIIRPVLSMLR 1368 (1701)
Q Consensus 1353 ~~~~~~~VKPlLq~lR 1368 (1701)
|+.|+-+--|+-.+..
T Consensus 66 v~qe~~rf~~lm~~~s 81 (830)
T KOG1923|consen 66 VNQEPRRFNTLMYVHS 81 (830)
T ss_pred hhcCcccccccccccc
Confidence 6666655555544444
No 405
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.10 E-value=50 Score=41.31 Aligned_cols=13 Identities=31% Similarity=0.347 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhcC
Q 000301 1304 VKILYTILLKWYP 1316 (1701)
Q Consensus 1304 ~~~~y~~~f~~~~ 1316 (1701)
.+.||+++|+++.
T Consensus 80 ~~~l~ki~~~Fl~ 92 (446)
T KOG4438|consen 80 FKLLCKILDMFLM 92 (446)
T ss_pred HHHHHHHHHHHHH
Confidence 5678888887763
No 406
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=91.09 E-value=65 Score=42.62 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=11.6
Q ss_pred ccccchhhHHHHHHHhcCCch
Q 000301 1198 RATRHFSDIYILIEMLSIPCI 1218 (1701)
Q Consensus 1198 ~~~~~~~d~~~l~~~~s~~~~ 1218 (1701)
-+.-.|.|+|.+-.-.--|.+
T Consensus 705 PSR~~F~dLYamYkk~lPpkL 725 (1259)
T KOG0163|consen 705 PSRTSFADLYAMYKKVLPPKL 725 (1259)
T ss_pred CccccHHHHHHHHHhhCCHhh
Confidence 334457787776655444444
No 407
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=91.05 E-value=15 Score=45.34 Aligned_cols=60 Identities=20% Similarity=0.073 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1540 ICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1540 ~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~e 1599 (1701)
...+.+.++++|+++..++..++...+.....+-..+..++.+.-..+.+|.+++.|..+
T Consensus 49 ~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e 108 (459)
T KOG0288|consen 49 KLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAE 108 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444455555555555555555544444444444444444444444555555555533
No 408
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=91.00 E-value=17 Score=48.61 Aligned_cols=40 Identities=33% Similarity=0.277 Sum_probs=16.6
Q ss_pred chhHHHHHHHHHHhhcCCCCCcccccchHHHHHHHHhhhcc
Q 000301 1318 ESYRGRMLKRLVDRATSTTESSRGVDLDLEILVILVCEEQE 1358 (1701)
Q Consensus 1318 ~~~~~~~~~~lv~~~~s~~~~~~ev~~~l~vL~~l~~~~~~ 1358 (1701)
..+.-+..+.+++-...+.+ ...+....+.|..++.+-+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~q~ 114 (670)
T KOG0239|consen 75 GGLLARLFKELIDLANSDKT-SNVVEAYNERLRDLLSELQS 114 (670)
T ss_pred chhHHHhhhhcccccccCCC-chhHHHHHHHHhhhcccccc
Confidence 33344444444444444322 22233334445554444443
No 409
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=90.96 E-value=0.54 Score=58.27 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000301 1438 FAREKKELSEQMREVESQLE 1457 (1701)
Q Consensus 1438 L~~ek~eLE~~l~ELE~rLe 1457 (1701)
|..+++++|.++.++|.+++
T Consensus 142 l~~Ri~e~Eeris~lEd~~~ 161 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIE 161 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 33444444444444444443
No 410
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=90.91 E-value=21 Score=40.47 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1468 AKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDE 1547 (1701)
Q Consensus 1468 ~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~e 1547 (1701)
.+...+...++.+|..++.+|-+....+..++..+..+...++-+.++++.++. .++.+.|.+++.|+..
T Consensus 78 K~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~----------~e~~~YesRI~dLE~~ 147 (196)
T PF15272_consen 78 KKSSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERE----------RERIAYESRIADLERQ 147 (196)
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHH
Confidence 335566667788888888887555555555666666666666666556555432 2333455555555555
Q ss_pred HH
Q 000301 1548 VR 1549 (1701)
Q Consensus 1548 l~ 1549 (1701)
+.
T Consensus 148 L~ 149 (196)
T PF15272_consen 148 LN 149 (196)
T ss_pred HH
Confidence 44
No 411
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=90.86 E-value=48 Score=42.57 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=15.0
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhhh
Q 000301 1612 LEALSMKELETLARIHEEGLRQIH 1635 (1701)
Q Consensus 1612 Le~~~~~e~e~L~~~~~~~~k~ir 1635 (1701)
++....+++++|.+.....+|+|-
T Consensus 320 ~v~pi~~kd~~lk~~~~~~kr~in 343 (591)
T KOG2412|consen 320 LVNPILKKDEELKNYNQSLKRAIN 343 (591)
T ss_pred HHhhhhhHHHHHHHHHHHHHhhcC
Confidence 455566777777777766444443
No 412
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=90.83 E-value=22 Score=44.00 Aligned_cols=54 Identities=17% Similarity=0.081 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1405 NMVREKAVFSQKLAESEAAGNRLKSEM-----RAEMDRFAREKKELSEQMREVESQLEW 1458 (1701)
Q Consensus 1405 ~le~Ek~~L~eqLee~E~al~elkaEl-----eee~~rL~~ek~eLE~~l~ELE~rLe~ 1458 (1701)
-++++...+++++.+++.++.+.+.+. +.+.........+|+.++.+++.++..
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~ 232 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQ 232 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444544444444444421 222333334444555555555555543
No 413
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=90.77 E-value=6.5 Score=49.05 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000301 1431 MRAEMDRFAREKKELSEQMR 1450 (1701)
Q Consensus 1431 leee~~rL~~ek~eLE~~l~ 1450 (1701)
...|+..|..++...|+++.
T Consensus 274 Hq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 274 HQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 34444444444444444444
No 414
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=90.54 E-value=28 Score=37.53 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=16.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1382 WHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKL 1417 (1701)
Q Consensus 1382 ~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqL 1417 (1701)
+...+..+.+|++.+.+...++........+-..+|
T Consensus 33 ls~f~AkEeeIErkKmeVrekVq~~LgrveEetkrL 68 (159)
T PF04949_consen 33 LSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRL 68 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444555555555544444444443333333333333
No 415
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=90.49 E-value=1.1e+02 Score=44.43 Aligned_cols=323 Identities=16% Similarity=0.206 Sum_probs=0.0
Q ss_pred HhhcCCchhHHHHHHHHHHhhcCCCCCcccccch-------HHHHHHHHhhhccccchhHHHHHHHHHHhHHHHHHHHHH
Q 000301 1312 LKWYPDESYRGRMLKRLVDRATSTTESSRGVDLD-------LEILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQ 1384 (1701)
Q Consensus 1312 f~~~~~~~~~~~~~~~lv~~~~s~~~~~~ev~~~-------l~vL~~l~~~~~~~VKPlLq~lRqe~E~~~~e~e~L~~k 1384 (1701)
|..|.-+.=|-+++-.=-+++.+..+-+..|+-+ .|.+.. +.-...+++.+.+..++.+....-.-..+.++
T Consensus 1166 lQ~F~Rda~q~ea~l~~qE~~L~~d~lp~sle~ae~~LKrh~DF~~t-m~a~~~ki~a~~~~gd~Lv~~~h~~s~~I~ek 1244 (2473)
T KOG0517|consen 1166 LQLFLRDARQAEATLSNQEAFLSHDNLPDSLEEAEALLKRHRDFLTT-MDANDEKIEALVDTGDKLVSEGHIDSDKIREK 1244 (2473)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhcccccccHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHhcCCccHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHH------------------------------------------------HHHHHHHHHHHHHHHH
Q 000301 1385 LCASEDEIIRIRDERK------------------------------------------------AEISNMVREKAVFSQK 1416 (1701)
Q Consensus 1385 lk~~e~ele~lrkEle------------------------------------------------~e~~~le~Ek~~L~eq 1416 (1701)
....+++-...+...+ .+++..++|+..-.+.
T Consensus 1245 ~~~I~~r~~~nr~rA~q~~~~L~~slelQ~flqd~~EL~~Wi~EK~l~a~Desy~~~~nl~~k~~kHqAFeaELaank~~ 1324 (2473)
T KOG0517|consen 1245 AQSILARRKANRERAQQRLRKLKDSLELQEFLQDCDELKLWIEEKMLMAQDESYRDARNLHSKWLKHQAFEAELAANKEW 1324 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHhChHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000301 1417 LAESEAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKR 1496 (1701)
Q Consensus 1417 Lee~E~al~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kq 1496 (1701)
|++++.+-.++-.+--+....++..+.+|..+-.+|+.... ++-.++...... +.+.+.+.++.+.|.+++...+
T Consensus 1325 l~~i~~eG~~L~~ekpe~~~~V~~kl~~L~~~W~~Le~~t~----~Kg~~L~qA~~q-~~~~qs~~D~~~~l~~le~qL~ 1399 (2473)
T KOG0517|consen 1325 LEKIEKEGQELVSEKPELKALVEKKLRELHKQWDELEKTTQ----EKGRKLFQANRQ-ELLLQSLADAKKKLDELESQLQ 1399 (2473)
T ss_pred HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHhc
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1497 --------DELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQ 1568 (1701)
Q Consensus 1497 --------eelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~ 1568 (1701)
-..+.+.+....++.++.....++.++...-..+..+-...+........=.+.++.=..-+..++..|++.
T Consensus 1400 S~D~G~DL~Svn~llkKqq~lEsem~~~~~kv~el~s~~~~ma~~~~~a~~I~~~~~~v~~Rf~~L~~Pl~~R~~~Le~S 1479 (2473)
T KOG0517|consen 1400 SDDTGKDLTSVNDLLKKQQVLESEMEVRAQKVAELQSQAKAMAEEGHSAENIEETTLAVLERFEDLLGPLQERRKQLEAS 1479 (2473)
T ss_pred CCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccCcchhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHhhccCchhhhHHH-------------hhH
Q 000301 1569 VARCEAYIDGMESKLQACQQ------------------YIHTLEAQLQEEMSRHAPLYGAGLEA-------------LSM 1617 (1701)
Q Consensus 1569 i~rLE~~l~~lE~eL~e~q~------------------~I~eLe~~l~eE~e~h~~~~~~~Le~-------------~~~ 1617 (1701)
+.-.+ =.++++.++.=..+ .+....+.++.|+..|.|.+-..|+. ...
T Consensus 1480 ~e~hQ-f~~dvddE~~WV~ErlP~A~s~d~G~~L~~~q~l~KK~q~Lq~EI~~H~prI~~vl~~gq~Li~~~h~~a~~i~ 1558 (2473)
T KOG0517|consen 1480 KELHQ-FVRDVDDELLWVAERLPLASSTDYGENLQTVQSLHKKNQTLQAEIKGHQPRINDVLERGQSLIDSGHPEAEAIE 1558 (2473)
T ss_pred HHHHH-HHHhhhHHHHHHHhhCccCCchhhccChHHHHHHHHHhHHHHHHHHhcchHHHHHHHHhHHHHhcCCccHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhc
Q 000301 1618 KELETLARIHEEGLRQIHTLQQCK 1641 (1701)
Q Consensus 1618 ~e~e~L~~~~~~~~k~ir~lq~~~ 1641 (1701)
.+..+|+++-.++-+.+..=.+++
T Consensus 1559 ~~~~eLe~aW~eL~~a~e~R~~~L 1582 (2473)
T KOG0517|consen 1559 EKLQELESAWQELKEACELRRQRL 1582 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 416
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=90.32 E-value=42 Score=39.15 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=35.7
Q ss_pred cchhHHHHHHHHHHhHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1360 IRPVLSMLREVAELANVDRAALWHQLC-ASEDEIIRIRDERKAEISNMVREKAVFSQKLAES 1420 (1701)
Q Consensus 1360 VKPlLq~lRqe~E~~~~e~e~L~~klk-~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~ 1420 (1701)
.++.++.++.+.+..+.....+...|. .....+..+.++++.+...+......++......
T Consensus 58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~ 119 (236)
T cd07651 58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQ 119 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677777777777777776666665 3445566666655544444444444444444433
No 417
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.29 E-value=55 Score=40.47 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=42.0
Q ss_pred cccccchHHHHHHHHhhhccccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1339 SRGVDLDLEILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLA 1418 (1701)
Q Consensus 1339 ~~ev~~~l~vL~~l~~~~~~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLe 1418 (1701)
.-...+.+|-+.+++--| + | .++++++.+.+...+++.-+.+..++....+.++..++.--+..+.
T Consensus 283 p~gy~lv~dt~w~~lqke-g--r-----------qlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~ 348 (542)
T KOG0993|consen 283 PIGYPLVLDTLWFILQKE-G--R-----------QLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLV 348 (542)
T ss_pred CCCCCcChHHHHHHHHHH-h--H-----------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 344566677787766554 1 1 2223333333333333333333344444445555555555444554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1419 ESEAAGNRLKSEMRAEMDRFARE 1441 (1701)
Q Consensus 1419 e~E~al~elkaEleee~~rL~~e 1441 (1701)
...+.++....+....+.+|...
T Consensus 349 tlq~~iSqaq~~vq~qma~lv~a 371 (542)
T KOG0993|consen 349 TLQAEISQAQSEVQKQMARLVVA 371 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444444433
No 418
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=90.28 E-value=40 Score=39.90 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=15.2
Q ss_pred CcccCCCCcCcCCCccccCCccC
Q 000301 1668 PLAVGLPHSLVPNGVGIHGNGHV 1690 (1701)
Q Consensus 1668 ~~~~~~~~~~~~~~~~~h~~g~~ 1690 (1701)
+..+--.|.+| .|.-.|++|+.
T Consensus 208 ~~~f~~~p~li-~Giel~~~~~~ 229 (250)
T PRK14474 208 DIHFVTSPELI-CGIELKTEGYK 229 (250)
T ss_pred ceeeecCcccc-cCeEEecCCce
Confidence 44555566666 77778988876
No 419
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=90.20 E-value=7 Score=53.24 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=9.7
Q ss_pred CchhHHHhhhcchhhHHHHHHHH
Q 000301 840 SSPSVMNLLMGVKVLQQAIIDLL 862 (1701)
Q Consensus 840 ~~~sl~~ll~~v~~lq~~ii~~l 862 (1701)
.|+-|-++--.+.-++..|-+.|
T Consensus 149 aS~eL~~iR~~~~~~~~~i~~~l 171 (782)
T PRK00409 149 ASEKLRGIRRQLRRKKSRIREKL 171 (782)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 420
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=90.13 E-value=7.5 Score=43.64 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1538 EEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEAQL 1597 (1701)
Q Consensus 1538 EE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l 1597 (1701)
+++.+.|+.+++..+++-.+...+-.....+..-|+.+.+.....|..+|.+|..|+++.
T Consensus 125 ~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 125 EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444455566666777777777777777888888887776
No 421
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=90.06 E-value=6 Score=53.73 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=13.1
Q ss_pred CCCchhHHHhhhcchhhHHHHHHHHHH
Q 000301 838 DESSPSVMNLLMGVKVLQQAIIDLLLD 864 (1701)
Q Consensus 838 ~~~~~sl~~ll~~v~~lq~~ii~~l~~ 864 (1701)
|..|+-|-++--.+.-++..|-+.|=.
T Consensus 142 d~aS~~L~~ir~~~~~~~~~i~~~l~~ 168 (771)
T TIGR01069 142 DGASEELDAIRESLKALEEEVVKRLHK 168 (771)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544444333
No 422
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=90.05 E-value=9.8 Score=48.01 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1468 AKLTTEKKVLQDRLHDAETQLSQL 1491 (1701)
Q Consensus 1468 ~kLq~EKk~LqerI~eLE~qLe~l 1491 (1701)
.+|..+-..|-.++.+|+.-+++|
T Consensus 209 ~~L~~~sd~Ll~kVdDLQD~VE~L 232 (424)
T PF03915_consen 209 KKLSEESDRLLTKVDDLQDLVEDL 232 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443
No 423
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=90.05 E-value=75 Score=41.66 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhh
Q 000301 1618 KELETLARIHEEGLRQIHTLQQC 1640 (1701)
Q Consensus 1618 ~e~e~L~~~~~~~~k~ir~lq~~ 1640 (1701)
+|.+.++..+-|..-.++--|.|
T Consensus 1009 kE~eQmqrynQr~ie~Lk~rqtq 1031 (1187)
T KOG0579|consen 1009 KEMEQMQRYNQREIEDLKRRQTQ 1031 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666654444444433
No 424
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=90.01 E-value=7.9 Score=52.72 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=15.3
Q ss_pred cccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 000301 1358 EIIRPVLSMLREVAELANVDRAALWHQLCASEDEII 1393 (1701)
Q Consensus 1358 ~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele 1393 (1701)
+.=+.+++-.++.......+.+++.+++.+...+++
T Consensus 498 Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e 533 (782)
T PRK00409 498 GLPENIIEEAKKLIGEDKEKLNELIASLEELERELE 533 (782)
T ss_pred CcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 344455555554444433344444433333333333
No 425
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=89.97 E-value=3.2 Score=47.63 Aligned_cols=66 Identities=24% Similarity=0.371 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000301 1445 LSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAE 1511 (1701)
Q Consensus 1445 LE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~e 1511 (1701)
-|.+|.+++.+|+..+ .-|+...++-.+-+.+-.++.++|.++.+|+-...+--.+|+.-|++...
T Consensus 184 he~~l~dkekEl~sfK-~sEeeNar~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~ 249 (311)
T PF04642_consen 184 HEDQLSDKEKELESFK-RSEEENARAVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLA 249 (311)
T ss_pred cccccccHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcCCcchHHH
Confidence 4556777777777544 23455566666677788888888888888776555545566555554433
No 426
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=89.94 E-value=32 Score=39.42 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=13.0
Q ss_pred CCCCCCCCCCC---CCCCcccCCCC
Q 000301 1654 TLPHNHGLYPT---APPPLAVGLPH 1675 (1701)
Q Consensus 1654 ~~~~~~~~~~~---~~p~~~~~~~~ 1675 (1701)
.+++.|+.||+ .||||-|++.=
T Consensus 231 ~~~~~~~~~psFrqqpppMK~ClsC 255 (286)
T KOG4451|consen 231 NLINRHRMPPSFRQQPPPMKVCLSC 255 (286)
T ss_pred hcccccCCCcchhcCCCcchHHHHH
Confidence 33356777776 36666666543
No 427
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=89.82 E-value=9.5 Score=43.14 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000301 1437 RFAREKKELSEQMREVESQLE 1457 (1701)
Q Consensus 1437 rL~~ek~eLE~~l~ELE~rLe 1457 (1701)
+|.+++.+++.++.+++.+++
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKIE 93 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444443
No 428
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=89.76 E-value=12 Score=46.37 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1469 KLTTEKKVLQDRLHDAETQLSQL 1491 (1701)
Q Consensus 1469 kLq~EKk~LqerI~eLE~qLe~l 1491 (1701)
-++++..++++++.++|.++.+.
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~f 196 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKY 196 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 429
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=89.66 E-value=61 Score=40.02 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhcCcch
Q 000301 1220 VEAAQTFERAVARGTIV 1236 (1701)
Q Consensus 1220 ~~~~~~~~~~~~~g~~~ 1236 (1701)
-+....++++|++..-.
T Consensus 128 d~id~a~Eeaia~a~ae 144 (672)
T KOG4722|consen 128 DEIDAALEEAIAMAAAE 144 (672)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666655443
No 430
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=89.65 E-value=60 Score=39.98 Aligned_cols=68 Identities=12% Similarity=0.031 Sum_probs=32.7
Q ss_pred cchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1360 IRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRL 1427 (1701)
Q Consensus 1360 VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~el 1427 (1701)
+|.-++-+-.+-+....+++.+...+...+.++.+--..++...+.+......|...+...+..+.++
T Consensus 82 ~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l 149 (333)
T PF05816_consen 82 AKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEEL 149 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555544444444444444444445544444333333333
No 431
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=89.58 E-value=74 Score=40.90 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1502 VVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQ 1557 (1701)
Q Consensus 1502 L~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~ 1557 (1701)
|.--|+.|..++.+|.-+..-+.++++..+.-+.-+|+.++++++++..++.++..
T Consensus 320 LNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 320 LNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred HHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555566666666666666665555554555566666666666555554433
No 432
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=89.51 E-value=85 Score=41.52 Aligned_cols=8 Identities=25% Similarity=0.463 Sum_probs=3.2
Q ss_pred HHHHHHhh
Q 000301 1137 VLDFLSKT 1144 (1701)
Q Consensus 1137 ~~~~~~~~ 1144 (1701)
+-|++.+.
T Consensus 32 f~d~f~~~ 39 (582)
T PF09731_consen 32 FRDFFEEY 39 (582)
T ss_pred HHHHHHHh
Confidence 34444443
No 433
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=89.48 E-value=13 Score=46.49 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000301 1467 IAKLTTEKKVLQDRLHDAETQL 1488 (1701)
Q Consensus 1467 ~~kLq~EKk~LqerI~eLE~qL 1488 (1701)
.+-.++|+-.|++++...|+++
T Consensus 271 ~elHq~Ei~~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 271 TELHQNEIYNLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH
Confidence 4444555555555555555443
No 434
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=89.44 E-value=72 Score=40.54 Aligned_cols=57 Identities=9% Similarity=0.017 Sum_probs=30.0
Q ss_pred cchhHHHHHHHHHHhHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1360 IRPVLSMLREVAELANV-DRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQK 1416 (1701)
Q Consensus 1360 VKPlLq~lRqe~E~~~~-e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eq 1416 (1701)
++=|.+.+++....+.+ -+..+...-...+.....+.++|....++|..-.+.|...
T Consensus 42 ~~fl~~~l~~Q~~~L~~~~~~~~~~~~~~~~~~f~~l~~~ld~~~~~L~~~l~~Lr~t 99 (412)
T PF04108_consen 42 TGFLRRGLKQQLKLLYKKVRSSLLIVYEWGQRDFKDLVKELDPADARLEQTLDMLRNT 99 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55556666666666666 3333333334444455555555555555555555555443
No 435
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=89.41 E-value=98 Score=44.25 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=29.3
Q ss_pred ChHHHhhhcCCccccCCCCcccccCCCCchhHHHhhhcchhhHHHHHHHHHHHHhhh
Q 000301 813 DPAKAKRLLLPTKLSGSDGKKVAKTDESSPSVMNLLMGVKVLQQAIIDLLLDIMVEC 869 (1701)
Q Consensus 813 ~~~~~~~~llp~~~~~~~~~~~~~~~~~~~sl~~ll~~v~~lq~~ii~~l~~~~~e~ 869 (1701)
||+-|-++|+=-+..+..+. .. .+.++---+--.+-|-.+|-+-|||-+|.-
T Consensus 364 d~~~f~k~lvk~~ikt~~E~--i~---~~~n~~QA~~irdslAK~lY~~lFdwiV~r 415 (1463)
T COG5022 364 DPSLFVKWLVKRQIKTGGEW--IV---VPLNLEQALAIRDSLAKALYSNLFDWIVDR 415 (1463)
T ss_pred CHHHHHHHHHHhHhhcCceE--EE---ecCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888865555543322 11 112233334445556667777788877754
No 436
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=89.35 E-value=13 Score=48.05 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000301 1554 TVGQTEGEKREKEEQVARC 1572 (1701)
Q Consensus 1554 ~i~~lek~k~~LE~~i~rL 1572 (1701)
++.+.++++.+.+..+.+.
T Consensus 360 e~ea~E~rkkr~~aei~Kf 378 (811)
T KOG4364|consen 360 EVEAQELRKKRHEAEIGKF 378 (811)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444443
No 437
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=89.35 E-value=22 Score=39.02 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 000301 1445 LSEQMREVESQL 1456 (1701)
Q Consensus 1445 LE~~l~ELE~rL 1456 (1701)
.+.+.+.+|++|
T Consensus 93 ~~~~~~~~ea~L 104 (155)
T PRK06569 93 FLIKKKNLEQDL 104 (155)
T ss_pred HHHHHHHHHHHH
Confidence 333333444333
No 438
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=89.32 E-value=71 Score=40.31 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhcCc
Q 000301 1220 VEAAQTFERAVARGT 1234 (1701)
Q Consensus 1220 ~~~~~~~~~~~~~g~ 1234 (1701)
+.++.|+.-+|+|-.
T Consensus 101 KavekVlagaIrREm 115 (488)
T PF06548_consen 101 KAVEKVLAGAIRREM 115 (488)
T ss_pred hhHHHHHHHHHHHHH
Confidence 666777777666654
No 439
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=89.22 E-value=8.1 Score=43.70 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHhhcCCCCCcccccchHHHHHHHHhh
Q 000301 1318 ESYRGRMLKRLVDRATSTTESSRGVDLDLEILVILVCE 1355 (1701)
Q Consensus 1318 ~~~~~~~~~~lv~~~~s~~~~~~ev~~~l~vL~~l~~~ 1355 (1701)
++|.-.=|..+.--+|+. +.-.| =|||+.||++
T Consensus 10 ~~y~lKELEK~~pK~~gI--~~~~V---Kdvlq~LvDD 42 (188)
T PF03962_consen 10 DFYTLKELEKLAPKEKGI--VSMSV---KDVLQSLVDD 42 (188)
T ss_pred CcccHHHHHHHcccccCC--chhhH---HHHHHHHhcc
Confidence 455555555565665644 22222 3789999986
No 440
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=89.15 E-value=23 Score=40.59 Aligned_cols=28 Identities=7% Similarity=-0.031 Sum_probs=20.3
Q ss_pred cccchhHHHHHHHHHHhHHHHHHHHHHH
Q 000301 1358 EIIRPVLSMLREVAELANVDRAALWHQL 1385 (1701)
Q Consensus 1358 ~~VKPlLq~lRqe~E~~~~e~e~L~~kl 1385 (1701)
=.++||.+++.+........++...+..
T Consensus 73 ~~~~pI~~vLe~R~~~I~~~L~~Ae~~k 100 (204)
T PRK09174 73 VILPRIGGIIETRRDRIAQDLDQAARLK 100 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999998888777666444333
No 441
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=89.03 E-value=69 Score=43.30 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=17.8
Q ss_pred HHHHhhhccChh--hHHHH--HHhhccCc------CCCCCCCCCCCc
Q 000301 1139 DFLSKTVNSWGD--VAETI--LRDIDCDD------DFGDNCSTMPSG 1175 (1701)
Q Consensus 1139 ~~~~~~v~~~~~--~~e~~--l~~i~~~~------~~~~~~~~~~~~ 1175 (1701)
-+|+-||....+ |+-.| +-+|.++- ..++.|.++||=
T Consensus 770 A~lRiavyeEggK~ig~RIlpvd~l~~GYrhv~LRse~Nqpl~lp~L 816 (1189)
T KOG1265|consen 770 ASLRIAVYEEGGKFIGQRILPVDGLNAGYRHVCLRSESNQPLTLPAL 816 (1189)
T ss_pred hheeeeeeccCCceeeeeccchhcccCcceeEEecCCCCCcccccee
Confidence 345566655544 44444 23344322 234556666653
No 442
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=89.01 E-value=11 Score=39.94 Aligned_cols=30 Identities=10% Similarity=0.293 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000301 1444 ELSEQMREVESQLEWLRSERDDEIAKLTTE 1473 (1701)
Q Consensus 1444 eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~E 1473 (1701)
.++.++..+|+++..|..+++.+-++.+++
T Consensus 24 ~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ 53 (126)
T PF09403_consen 24 SVESELNQLEAEYQQLEQKEEARYNEEKQE 53 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555554444333333333333
No 443
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=89.01 E-value=46 Score=37.94 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1524 DEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGE 1561 (1701)
Q Consensus 1524 Eeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~ 1561 (1701)
++++-..+.....+|.+++.|..++.+...-|+-|+++
T Consensus 128 ~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 128 EEELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQR 165 (205)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444455555666666655555555555544
No 444
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=89.00 E-value=9.1 Score=52.07 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=6.6
Q ss_pred hhHHHhhhcchhhH
Q 000301 842 PSVMNLLMGVKVLQ 855 (1701)
Q Consensus 842 ~sl~~ll~~v~~lq 855 (1701)
+.|-.++..+..+.
T Consensus 111 ~~L~~~~~~l~~~~ 124 (771)
T TIGR01069 111 EILFHLRLNLITLP 124 (771)
T ss_pred hHHHHHHhcCCCcH
Confidence 44555554544433
No 445
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=88.96 E-value=38 Score=43.79 Aligned_cols=29 Identities=10% Similarity=-0.012 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1571 RCEAYIDGMESKLQACQQYIHTLEAQLQE 1599 (1701)
Q Consensus 1571 rLE~~l~~lE~eL~e~q~~I~eLe~~l~e 1599 (1701)
.|..-...+..+.++.+..+..+..+++.
T Consensus 281 ~Lr~l~~~l~~~~~~V~~~~~~~s~~Lrr 309 (478)
T PF11855_consen 281 FLRRLHRRLLEAGEEVQRTRRRLSRSLRR 309 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666666666666666655
No 446
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=88.93 E-value=1.5e+02 Score=43.55 Aligned_cols=62 Identities=15% Similarity=-0.011 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHhhhcCCC-CCCchhhhhhhhhccccccchHHHHHHHHHHHHhcCCCCCh
Q 000301 1074 FGSEVWERILLKSLELLTDSN-DEPLAVTIDFIFKAASQCQHLPEAVRSVRVRLKNLGAEVSP 1135 (1701)
Q Consensus 1074 ~~~~~~~~v~~~~~~~l~~~~-~e~l~~~i~f~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~ 1135 (1701)
.+...++.++..+...+..-+ .+..++-.-+...+..++..++..++..|..+..-|...+=
T Consensus 415 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~g 477 (1395)
T KOG3595|consen 415 EEVLSVELLRGVLEAYLKQFNIEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSG 477 (1395)
T ss_pred CchHhHHHHHHHHHHHHHHHhhhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCC
Confidence 344555666666666666666 77777777777788888888888888888887666666543
No 447
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.86 E-value=3.9 Score=39.36 Aligned_cols=59 Identities=12% Similarity=0.270 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1512 RLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVA 1570 (1701)
Q Consensus 1512 klk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~ 1570 (1701)
.|++-.++|..+-++-++|.+........+++|.....+++..+..+..+..+++..+.
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELE 64 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555555444444444444444444444444444333333333333
No 448
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=88.81 E-value=30 Score=35.38 Aligned_cols=16 Identities=13% Similarity=0.163 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 000301 1469 KLTTEKKVLQDRLHDA 1484 (1701)
Q Consensus 1469 kLq~EKk~LqerI~eL 1484 (1701)
.|...+..++..+..+
T Consensus 76 ~l~~q~~~l~~~l~~l 91 (127)
T smart00502 76 VLEQQLESLTQKQEKL 91 (127)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 449
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=88.68 E-value=16 Score=46.22 Aligned_cols=27 Identities=11% Similarity=0.141 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000301 1434 EMDRFAREKKELSEQMREVESQLEWLR 1460 (1701)
Q Consensus 1434 e~~rL~~ek~eLE~~l~ELE~rLe~l~ 1460 (1701)
.+.-.+++..+.|.++.+....|...+
T Consensus 243 ~v~~Ae~ev~~Ae~rl~~Ar~aL~~fR 269 (434)
T PRK15178 243 RILWLENDVKSAQENLGAARLELLKIQ 269 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555554333
No 450
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=88.62 E-value=36 Score=39.83 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=9.6
Q ss_pred HHhcCCCCCh-hHHHHHHhhh
Q 000301 1126 LKNLGAEVSP-CVLDFLSKTV 1145 (1701)
Q Consensus 1126 l~~~~~~~~~-~~~~~~~~~v 1145 (1701)
|+.-|.++|. .|++-|+-+|
T Consensus 42 l~ipgksisnwdlmerlk~ai 62 (445)
T KOG2891|consen 42 LKIPGKSISNWDLMERLKGAI 62 (445)
T ss_pred ccCCCcccchHHHHHHHHhhc
Confidence 5555555544 2444444444
No 451
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=88.60 E-value=31 Score=39.14 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1465 DEIAKLTTEKKVLQDRLHDAETQLSQL 1491 (1701)
Q Consensus 1465 e~~~kLq~EKk~LqerI~eLE~qLe~l 1491 (1701)
.++..|+.++..|+.++.+++.+.+..
T Consensus 127 ~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 127 EEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555554444443
No 452
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=88.45 E-value=34 Score=43.29 Aligned_cols=17 Identities=6% Similarity=0.262 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000301 1544 LQDEVRRLTQTVGQTEG 1560 (1701)
Q Consensus 1544 Le~el~elee~i~~lek 1560 (1701)
++.++...+.++.+++.
T Consensus 232 ~~~~l~~~~~~l~~~~~ 248 (421)
T TIGR03794 232 VEARIKEARYEIEELEN 248 (421)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444443333
No 453
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=88.37 E-value=20 Score=37.82 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 000301 1470 LTTEKKVLQDRLHDA 1484 (1701)
Q Consensus 1470 Lq~EKk~LqerI~eL 1484 (1701)
+|.-|++..+++.++
T Consensus 18 lQQaKKk~~EELgEa 32 (134)
T PF15233_consen 18 LQQAKKKSSEELGEA 32 (134)
T ss_pred HHHHHHHhHHHHHHH
Confidence 333344444444333
No 454
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=88.30 E-value=11 Score=39.45 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1402 EISNMVREKAVFSQKLAESEAAGNRL 1427 (1701)
Q Consensus 1402 e~~~le~Ek~~L~eqLee~E~al~el 1427 (1701)
+++.+..++..++.+|.+.+.++.++
T Consensus 21 ql~~~~~qk~~le~qL~E~~~al~El 46 (119)
T COG1382 21 QLQKVILQKQQLEAQLKEIEKALEEL 46 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555444
No 455
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=88.15 E-value=16 Score=38.81 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1463 RDDEIAKLTTEKKVLQDRLHDAETQLSQLK 1492 (1701)
Q Consensus 1463 ~Ee~~~kLq~EKk~LqerI~eLE~qLe~le 1492 (1701)
-.+.+.+.+.-+++|+..|.+.+..|..++
T Consensus 91 Yk~llk~y~~~~~~L~k~I~~~e~iI~~fe 120 (126)
T PF09403_consen 91 YKELLKKYKDLLNKLDKEIAEQEQIIDNFE 120 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666666665555544
No 456
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=88.12 E-value=24 Score=38.69 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=18.0
Q ss_pred cccchhHHHHHHHHHHhHHHHH
Q 000301 1358 EIIRPVLSMLREVAELANVDRA 1379 (1701)
Q Consensus 1358 ~~VKPlLq~lRqe~E~~~~e~e 1379 (1701)
-.-|||+++|.+..+....+++
T Consensus 24 fawkPI~~~LeeR~~~I~~~Ld 45 (154)
T PRK06568 24 PAKKAILNSLDAKILEVQEKVL 45 (154)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999998888776666
No 457
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=88.08 E-value=30 Score=41.10 Aligned_cols=28 Identities=21% Similarity=0.482 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1465 DEIAKLTTEKKVLQDRLHDAETQLSQLK 1492 (1701)
Q Consensus 1465 e~~~kLq~EKk~LqerI~eLE~qLe~le 1492 (1701)
+.+.+.+.+.+++.+++.+...+|.+++
T Consensus 214 EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 214 EELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555554444443
No 458
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.99 E-value=10 Score=42.97 Aligned_cols=55 Identities=11% Similarity=0.269 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1537 REEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIH 1591 (1701)
Q Consensus 1537 lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~ 1591 (1701)
+|+.+.+++..+.+++++...+...+...+..+.+++.....+..++..+..+.+
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444445555555555555555555444433
No 459
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.85 E-value=62 Score=41.41 Aligned_cols=16 Identities=6% Similarity=0.029 Sum_probs=9.0
Q ss_pred CCcccCCcEEEEEEEE
Q 000301 380 SGFLVDDTAVFSTSFH 395 (1701)
Q Consensus 380 ~GYLvdDsliIe~~V~ 395 (1701)
+||+.|+.-+|.|.+.
T Consensus 138 ~s~~eDgk~~v~CRt~ 153 (741)
T KOG4460|consen 138 NSEFEDGKSTVNCRTT 153 (741)
T ss_pred cceecCCCceEEEEee
Confidence 4566666556656543
No 460
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=87.82 E-value=32 Score=37.68 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=21.1
Q ss_pred cccchhHHHHHHHHHHhHHHHHHHHHHHH
Q 000301 1358 EIIRPVLSMLREVAELANVDRAALWHQLC 1386 (1701)
Q Consensus 1358 ~~VKPlLq~lRqe~E~~~~e~e~L~~klk 1386 (1701)
=..+|+.+++.+..+....++++..+...
T Consensus 42 ~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ 70 (156)
T CHL00118 42 ILYKPLLKVLDERKEYIRKNLTKASEILA 70 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999988887766664443333
No 461
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=87.80 E-value=72 Score=38.53 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000301 1428 KSEMRAEMDRFAREKKELSEQMREVESQLEWLRS 1461 (1701)
Q Consensus 1428 kaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~ 1461 (1701)
+.++++.+.......+++-.+|.+++.+|..+..
T Consensus 47 ~~~~~~~l~~n~e~q~~lw~~i~el~~~L~~l~~ 80 (289)
T PF05149_consen 47 RKESEKFLQKNEEQQQELWREIQELERELQDLAE 80 (289)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555666666666666654443
No 462
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=87.59 E-value=66 Score=37.89 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1512 RLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQAC 1586 (1701)
Q Consensus 1512 klk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~ 1586 (1701)
++.+++.++...+.+..+........+...+.|+.++..--.+.+=-=..+......+......+..++.++..+
T Consensus 129 kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~a 203 (239)
T PF05276_consen 129 KVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQA 203 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433333322222222223333333444444444444444433
No 463
>PTZ00332 paraflagellar rod protein; Provisional
Probab=87.56 E-value=94 Score=39.59 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1501 RVVKEKNALAERLKSAEAARK----RFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQV 1569 (1701)
Q Consensus 1501 kL~kEK~aL~eklk~lE~ei~----~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i 1569 (1701)
|.+.....++.+++..+.+++ .++=..+++..+++.+.+.++.++.++..+.++....++....-|+.+
T Consensus 442 KKErRLEeLDRqIR~~hiqrE~amETlDPNAKkyseakkeLl~~r~~Ve~eI~~L~~Kq~~alE~F~pTE~aL 514 (589)
T PTZ00332 442 KKEKRLEEIDRNIRTTHIQLEFCVETFDPNAKKHADMKKELYKLRQGVEEELAMLKEKQAQALEMFKESEEAL 514 (589)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 334444556666655554433 333335566666777777777777777777766666666555555544
No 464
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=87.52 E-value=41 Score=36.27 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=30.0
Q ss_pred cccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1358 EIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVRE 1409 (1701)
Q Consensus 1358 ~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~E 1409 (1701)
=..||+.+++.+..+.....++... +...+.+.++++.+..+.+...+
T Consensus 27 fl~kPi~~~l~~R~~~I~~~l~~A~----~~~~ea~~~~~e~e~~l~~Ar~e 74 (141)
T PRK08476 27 WLYKPLLKFMDNRNASIKNDLEKVK----TNSSDVSEIEHEIETILKNAREE 74 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999888777766333 33344455555555444444333
No 465
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=87.41 E-value=19 Score=42.50 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1445 LSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQ 1490 (1701)
Q Consensus 1445 LE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~ 1490 (1701)
+|++++..|+||. +.....|++.|++-|+.....|.+
T Consensus 106 IEEECHRVEAQLA---------LKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 106 IEEECHRVEAQLA---------LKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhhch
Confidence 3455666666665 344445566666666655555544
No 466
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=87.39 E-value=51 Score=37.29 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=12.9
Q ss_pred cccCCCCc---CcCCCccccCCccCC
Q 000301 1669 LAVGLPHS---LVPNGVGIHGNGHVN 1691 (1701)
Q Consensus 1669 ~~~~~~~~---~~~~~~~~h~~g~~~ 1691 (1701)
|--|+|+- .|-+|..-|.|||+-
T Consensus 165 mR~GLlGk~~~~in~ps~s~~Ngg~P 190 (272)
T KOG4552|consen 165 MRAGLLGKQRPLINSPSASSSNGGAP 190 (272)
T ss_pred HhccCccccccccCCCCcCCCCCCCC
Confidence 44556652 332333458888875
No 467
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.38 E-value=1.2e+02 Score=40.45 Aligned_cols=241 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1383 HQLCASEDEIIRIRDERK---AEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWL 1459 (1701)
Q Consensus 1383 ~klk~~e~ele~lrkEle---~e~~~le~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~l 1459 (1701)
.++..+.+....+..-+. .++.....|...|++++ +++.++-+---+.++ ...+..+|.++..+++++
T Consensus 616 ~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~----~Al~~i~~~~fa~ID-----~~Sa~rqIael~~~lE~L 686 (1104)
T COG4913 616 AKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQA----NALAHIQALNFASID-----LPSAQRQIAELQARLERL 686 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHhcchhhcc-----hhhHHHHHHHHHHHHHHh
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
Q 000301 1460 RSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAA--------------RKRFDE 1525 (1701)
Q Consensus 1460 ~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~e--------------i~~lEe 1525 (1701)
. --.+.++-++......|-+...+|.+... +......+++-.+.-..+-.++.++-.+ ....-+
T Consensus 687 ~-~t~~~~~~~~~~l~aaQT~~~vler~~~~-~~~e~~~~k~~lkrA~~~~~k~~si~~~~~t~~~q~~~~a~f~q~a~~ 764 (1104)
T COG4913 687 T-HTQSDIAIAKAALDAAQTRQKVLERQYQQ-EVTECAGLKKDLKRAAMLSRKVHSIAKQGMTGALQALGAAHFPQVAPE 764 (1104)
T ss_pred c-CChhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhChH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000301 1526 ELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKRE-KEEQVARCEAYIDGMESKLQACQQYIHTLEAQLQEEMSRH 1604 (1701)
Q Consensus 1526 el~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~-LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~~l~eE~e~h 1604 (1701)
+......+.. .+-++.|+.++.+.+..+.+++.++.. +..-+..-.+...+|..+++..=+++..|+.--.+-+-+-
T Consensus 765 ~h~~~vd~~~--~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~Lpef 842 (1104)
T COG4913 765 QHDDIVDIER--IEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDALPEF 842 (1104)
T ss_pred hhhhhhhHHH--HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhHHHH
Q ss_pred cCchhhhHHHhhHHHHHHHHHHHHHHhhhhhh
Q 000301 1605 APLYGAGLEALSMKELETLARIHEEGLRQIHT 1636 (1701)
Q Consensus 1605 ~~~~~~~Le~~~~~e~e~L~~~~~~~~k~ir~ 1636 (1701)
---+-..|...+-.+..-+.+-..+.-+-|-|
T Consensus 843 ~arF~~llN~~S~~~v~q~~~~L~~er~~IeE 874 (1104)
T COG4913 843 LARFQELLNRSSDDGVTQLLSHLDHERALIEE 874 (1104)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
No 468
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=87.37 E-value=14 Score=45.92 Aligned_cols=9 Identities=0% Similarity=0.143 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 000301 1621 ETLARIHEE 1629 (1701)
Q Consensus 1621 e~L~~~~~~ 1629 (1701)
.+++++..+
T Consensus 302 ~EINAA~GQ 310 (447)
T KOG2751|consen 302 DEINAAWGQ 310 (447)
T ss_pred HHHHHHhhh
Confidence 445555555
No 469
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=87.35 E-value=13 Score=38.34 Aligned_cols=6 Identities=33% Similarity=0.684 Sum_probs=2.1
Q ss_pred HHHHHH
Q 000301 1542 QSLQDE 1547 (1701)
Q Consensus 1542 r~Le~e 1547 (1701)
..++++
T Consensus 70 ~~l~~r 75 (110)
T TIGR02338 70 QELKEK 75 (110)
T ss_pred HHHHHH
Confidence 333333
No 470
>COG5293 Predicted ATPase [General function prediction only]
Probab=87.30 E-value=93 Score=39.27 Aligned_cols=209 Identities=12% Similarity=0.156 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhH-------HHHHHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1363 VLSMLREVAELAN-------VDRAALWHQLCASEDEIIRIRDERK------AEISNMVREKAVFSQKLAESEAAGNRLKS 1429 (1701)
Q Consensus 1363 lLq~lRqe~E~~~-------~e~e~L~~klk~~e~ele~lrkEle------~e~~~le~Ek~~L~eqLee~E~al~elka 1429 (1701)
.|..-+...+.+. +..++++..--+.++++..-++-+. ++...++++.+.++.++.++.++---...
T Consensus 204 ~l~s~kKl~e~~~~~~ig~L~slee~e~~e~~~~~~v~~k~~tln~f~~~a~~y~e~ee~vn~v~~~I~e~~n~~i~~q~ 283 (591)
T COG5293 204 ELESKKKLAELLRKTWIGSLDSLEEIETTELRKQDEVNKKQATLNTFDFHAQDYAETEELVNTVDERIAELNNRRISMQS 283 (591)
T ss_pred HHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHHHHHHHHHH---------------HHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1430 EMRAEMDRFAREKK---------------ELSEQMR-EVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKS 1493 (1701)
Q Consensus 1430 Eleee~~rL~~ek~---------------eLE~~l~-ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~ 1493 (1701)
..+--...+..++. .+..+++ .+|.-..-.+.=.+++-+=++.|+++++..+.+++..+.++-.
T Consensus 284 ~~~~~~~slk~~~~~~pd~i~~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~ 363 (591)
T COG5293 284 HWKRVKTSLKEQILFCPDEIQVLYEEVGVLFPGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGK 363 (591)
T ss_pred HHHHHhhcchhhccCChHHHHHHHHHhhhcChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1494 RKRDELKRVVK-----EKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQ 1568 (1701)
Q Consensus 1494 ~kqeelkkL~k-----EK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~ 1568 (1701)
++++-+.-|+. +...+.+.+..++.++.+++-+++.+.+ ..++..-+..++.++=++.+.+-..-++--.+-+.
T Consensus 364 ~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k-~~~~~~~i~~lkhe~l~~~~r~y~e~q~q~~~~~~ 442 (591)
T COG5293 364 RRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRK-LHALDQYIGTLKHECLDLEERIYTEVQQQCSLFAS 442 (591)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHH
Q 000301 1569 VARC 1572 (1701)
Q Consensus 1569 i~rL 1572 (1701)
+.+|
T Consensus 443 ~~~l 446 (591)
T COG5293 443 IGRL 446 (591)
T ss_pred HHHH
No 471
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=87.22 E-value=41 Score=35.13 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000301 1568 QVARCEAYIDGMESKLQAC 1586 (1701)
Q Consensus 1568 ~i~rLE~~l~~lE~eL~e~ 1586 (1701)
++..+...+..++..+...
T Consensus 89 ~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 89 ELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 472
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=87.19 E-value=35 Score=40.40 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000301 1361 RPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKL-AESEAAGNRLKSEMRAEMDRFA 1439 (1701)
Q Consensus 1361 KPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqL-ee~E~al~elkaEleee~~rL~ 1439 (1701)
|||++++.+..+.....+++..+...+.+....+.++ ++.....+.+.+-++. .++++...++.++++++.+++.
T Consensus 28 kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~----~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~ 103 (250)
T PRK14474 28 KPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQ----KQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATAR 103 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000301 1440 REKK-----ELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDEL 1499 (1701)
Q Consensus 1440 ~ek~-----eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeel 1499 (1701)
.+.. +-+.-+.++..++..+--+.-+++-.-......-+.=++..-+++..+..+.++.+
T Consensus 104 ~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~kiL~~~~d~~~~~~lid~~i~~l~~l~~~~r~~l 168 (250)
T PRK14474 104 DEWLEQLEREKQEFFKALQQQTGQQMVKIIRAALADLANATLEQQIVGIFIARLEHLSEAERQAL 168 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcccCHHHHHHH
No 473
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=87.10 E-value=38 Score=40.46 Aligned_cols=141 Identities=17% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1443 KELSEQMREVESQLEWLRSE---RDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAA 1519 (1701)
Q Consensus 1443 ~eLE~~l~ELE~rLe~l~~E---~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~e 1519 (1701)
+++..+-.||..|++-.++| ++...-+--.|..+|.+.|.+||+.|.. -......+...+.....|.+..+.|+++
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLa-gGaaaNavrdYqrq~~elneEkrtLeRE 81 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILA-GGAAANAVRDYQRQVQELNEEKRTLERE 81 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1520 RKRFDEELKRYATENVTR--------------EEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQ 1584 (1701)
Q Consensus 1520 i~~lEeel~kL~kE~k~l--------------EE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~ 1584 (1701)
+.+..-..+|.......- -|+++=|+.|++.|++++.-.+.-.+.--+..+++.-++..||..|.
T Consensus 82 LARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk 160 (351)
T PF07058_consen 82 LARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLK 160 (351)
T ss_pred HHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 474
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=87.09 E-value=20 Score=44.75 Aligned_cols=126 Identities=13% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000301 1431 MRAEMDRFAREKKELSEQMREVESQLEWLRSERDD-EIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNAL 1509 (1701)
Q Consensus 1431 leee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee-~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL 1509 (1701)
.+..++++.++...++.++...++=++.++....+ ....+..|++++..+=+.+..++..++.+.. .+..+..++
T Consensus 141 ~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~----~l~~~l~e~ 216 (447)
T KOG2751|consen 141 MDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEA----ELDHQLKEL 216 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1510 AERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEG 1560 (1701)
Q Consensus 1510 ~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek 1560 (1701)
+.+-..+.++..++-.+........-+.++.++.++.+++--+.+..-+.+
T Consensus 217 ~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~k 267 (447)
T KOG2751|consen 217 EFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRK 267 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHh
No 475
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=87.08 E-value=20 Score=37.67 Aligned_cols=100 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1451 EVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKR----DELKRVVKEKNALAERLKSAEAARKRFDEE 1526 (1701)
Q Consensus 1451 ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kq----eelkkL~kEK~aL~eklk~lE~ei~~lEee 1526 (1701)
++++.+.+.. ...++++.+-..|..++.++.+.+..+++++.--. -..-.--.=+.+..+-+.++++..+.++-+
T Consensus 7 ~~q~~l~q~Q-qLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~r 85 (119)
T COG1382 7 EVQAQLAQLQ-QLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELR 85 (119)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1527 LKRYATENVTREEICQSLQDEVRRL 1551 (1701)
Q Consensus 1527 l~kL~kE~k~lEE~~r~Le~el~el 1551 (1701)
++.|++....++++..+++.++..+
T Consensus 86 i~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 86 IKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=87.07 E-value=59 Score=41.37 Aligned_cols=159 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 000301 1372 ELANVDRAALWHQLCASEDEIIRIRDERK-AEISNMVREKAVFSQKLAESEAAGNRLKSEM-----RAEMDRFAREKKEL 1445 (1701)
Q Consensus 1372 E~~~~e~e~L~~klk~~e~ele~lrkEle-~e~~~le~Ek~~L~eqLee~E~al~elkaEl-----eee~~rL~~ek~eL 1445 (1701)
...+..+. ...++..|.-+.++-..+. ..+.-.+++.+..++++.++..++...+... +.+.+.+..-+..|
T Consensus 214 PedA~~ia--~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~L 291 (434)
T PRK15178 214 AKQAEFFA--QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGF 291 (434)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1446 SEQMREVESQLEWL---RSERDDEIAKLTTEKKVLQDRLHDAETQLSQ-----LKSRKRDELKRVVKEKNALAERLKSAE 1517 (1701)
Q Consensus 1446 E~~l~ELE~rLe~l---~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~-----le~~kqeelkkL~kEK~aL~eklk~lE 1517 (1701)
+.++.+++.+|..+ ..+-.-++..++.++..|+++|.+...++.. -....-.+.+.|..++.-.++.+..+-
T Consensus 292 e~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAl 371 (434)
T PRK15178 292 ETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESAL 371 (434)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 000301 1518 AARKRFDEELKRYAT 1532 (1701)
Q Consensus 1518 ~ei~~lEeel~kL~k 1532 (1701)
..++....+..|-.+
T Consensus 372 aaLE~AR~EA~RQ~~ 386 (434)
T PRK15178 372 QTLQQGKLQALRERQ 386 (434)
T ss_pred HHHHHHHHHHHhhhh
No 477
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.06 E-value=6.2 Score=37.53 Aligned_cols=68 Identities=22% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1501 RVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQ 1568 (1701)
Q Consensus 1501 kL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~ 1568 (1701)
+++.++.+|+.++..+..++...+..++.+..|.......+...-.+..+|++++..+.++......+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 478
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=87.04 E-value=20 Score=47.97 Aligned_cols=154 Identities=14% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1413 FSQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLK 1492 (1701)
Q Consensus 1413 L~eqLee~E~al~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le 1492 (1701)
+++++.++++++.....+.+.....+....+.+.+.+++++.++. ..|.++...+.....|++.+.++.+.-++-.
T Consensus 344 ~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~----~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~ 419 (656)
T PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFA----QLDGKLADAQSAQQALEQQYQDLSRNRDDWM 419 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1493 SRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARC 1572 (1701)
Q Consensus 1493 ~~kqeelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rL 1572 (1701)
..+.+.+-++-..|--+...++.+..-++..++.+.++..- ++...++.+.+.|++|
T Consensus 420 laEae~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La~~~~P-----------------------~l~~lR~Ala~Di~~L 476 (656)
T PRK06975 420 IAEVEQMLSSASQQLQLTGNVQLALIALQNADARLATSDSP-----------------------QAVAVRKAIAQDIERL 476 (656)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCc-----------------------chHHHHHHHHHHHHHH
Q ss_pred HHH----HHHHHHHHHHHHHHHHHH
Q 000301 1573 EAY----IDGMESKLQACQQYIHTL 1593 (1701)
Q Consensus 1573 E~~----l~~lE~eL~e~q~~I~eL 1593 (1701)
++- +.++-.+|..+..++.+|
T Consensus 477 ~~~~~~D~~gl~l~L~~l~~~vd~L 501 (656)
T PRK06975 477 KAAPSADLTGLAIKLDDAIAKIDAL 501 (656)
T ss_pred hcCCcCCHHHHHHHHHHHHHHHhhC
No 479
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=87.01 E-value=24 Score=41.85 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1478 QDRLHDAETQLSQLKSRKR-----DELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLT 1552 (1701)
Q Consensus 1478 qerI~eLE~qLe~le~~kq-----eelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~ele 1552 (1701)
..++.++.+.+.+++..+- ...-..-.+........+..+.+++..+..++....|....++.+++.+.++++++
T Consensus 148 ~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~ 227 (269)
T PF05278_consen 148 ESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIK 227 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1553 QTVGQTEGEKREKEEQVARCEAYIDGMESKLQA 1585 (1701)
Q Consensus 1553 e~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e 1585 (1701)
+++.+...+..+++....++..++..+.+++..
T Consensus 228 ~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 228 ERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=86.97 E-value=76 Score=37.96 Aligned_cols=256 Identities=18% Similarity=0.190 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q 000301 1363 VLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAG---------NRLKSEMRA 1433 (1701)
Q Consensus 1363 lLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al---------~elkaElee 1433 (1701)
|...+.+..+.....-. ...+.+...++..+..+.+..+.+.....+.-...-++..... ..+-+.+..
T Consensus 7 lP~~l~~~~~~v~~~~g--~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~ 84 (296)
T PF13949_consen 7 LPPSLLEKSEEVRSEGG--IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRK 84 (296)
T ss_dssp --HHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHH
T ss_pred CChHHHHHHHHHHhCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHHHHHHH
Q 000301 1434 EMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAE--------TQLSQLKSRKRDELKRVVKE 1505 (1701)
Q Consensus 1434 e~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE--------~qLe~le~~kqeelkkL~kE 1505 (1701)
+++++..-+.....-=..+...+. ..+.-+.-|..-...|...+-... ..+.+++.... ++..+..+
T Consensus 85 ~l~~~~~~L~~A~~sD~~~~~~~~----~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~-~l~~l~~e 159 (296)
T PF13949_consen 85 ELQKYREYLEQASESDSQLRSKLE----SIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLN-KLEELKKE 159 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHH-HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1506 KNALAERLKSAEAARKRFDEELKRYAT-----ENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGME 1580 (1701)
Q Consensus 1506 K~aL~eklk~lE~ei~~lEeel~kL~k-----E~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE 1580 (1701)
|..+..++++ ..+-..+..-+..+++ ....+++++++...-...+++.+...+....++....+++-.......
T Consensus 160 R~~~~~~lk~-~~~~d~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~ 238 (296)
T PF13949_consen 160 REELLEQLKE-KLQNDDISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQ 238 (296)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SH
T ss_pred HHHHHHHHHH-HHhhccHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHhhHHHHHHHHHHHHHHhhhhhhhhhh
Q 000301 1581 SKLQACQQYIHTLEAQLQEEMSRHAPLYGAGLEALSMKELETLARIHEEGLRQIHTLQQC 1640 (1701)
Q Consensus 1581 ~eL~e~q~~I~eLe~~l~eE~e~h~~~~~~~Le~~~~~e~e~L~~~~~~~~k~ir~lq~~ 1640 (1701)
.. ...+..++.|+..... =..+....++-...+..+...+..++++
T Consensus 239 ~~-~~r~~~~~~l~~a~~~-------------y~el~~~l~eG~~FY~~L~~~~~~l~~~ 284 (296)
T PF13949_consen 239 EQ-KERESALQRLEAAYDA-------------YKELSSNLEEGLKFYNDLLEILNKLQQK 284 (296)
T ss_dssp HH-HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHH-------------HHHHHHhHHHHHHHHHHHHHHHHHHHHH
No 481
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=86.93 E-value=39 Score=45.30 Aligned_cols=180 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1407 VREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAET 1486 (1701)
Q Consensus 1407 e~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~ 1486 (1701)
..+..+..+++.+.++.+..++...+..--........-....+++....+..-.+.++++.++.+++++++++++++++
T Consensus 42 ~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~ 121 (646)
T PRK05771 42 NERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQ 121 (646)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHhccccccchhhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhH-----------------------HHHHHH--------------------------HHHHHHHHHHHHH--
Q 000301 1487 QLSQLKSRKR-----------------------DELKRV--------------------------VKEKNALAERLKS-- 1515 (1701)
Q Consensus 1487 qLe~le~~kq-----------------------eelkkL--------------------------~kEK~aL~eklk~-- 1515 (1701)
++++++.-.. +...++ ......+.+-++.
T Consensus 122 ~~~~l~~~~~ld~~l~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~l~~~~ 201 (646)
T PRK05771 122 EIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLG 201 (646)
T ss_pred HHHHhhhhhcCCCCHHHhCCCCcEEEEEEEecchhhhhHHhhccCceEEEEEecCCcEEEEEEEEhhhHHHHHHHHHHCC
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 000301 1516 -----------AEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAY--------- 1575 (1701)
Q Consensus 1516 -----------lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~--------- 1575 (1701)
.++.+.++++++++++++.+..+++++++..+...+..+....-....+..+...++...
T Consensus 202 f~~~~~p~~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~GW 281 (646)
T PRK05771 202 FERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGW 281 (646)
T ss_pred CEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEE
Q ss_pred -----HHHHHHHHHHH
Q 000301 1576 -----IDGMESKLQAC 1586 (1701)
Q Consensus 1576 -----l~~lE~eL~e~ 1586 (1701)
..+++..+++.
T Consensus 282 vP~~~~~~l~~~l~~~ 297 (646)
T PRK05771 282 VPEDRVKKLKELIDKA 297 (646)
T ss_pred eehhHHHHHHHHHHHh
No 482
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=86.92 E-value=14 Score=39.62 Aligned_cols=98 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Q 000301 1492 KSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQ----------------------------- 1542 (1701)
Q Consensus 1492 e~~kqeelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r----------------------------- 1542 (1701)
+...+.+++.+....+.+.+.+..+...+..++..+.++..-...++....
T Consensus 1 ~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v 80 (140)
T PRK03947 1 MMESEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIV 80 (140)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEE
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1543 ----------SLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQY 1589 (1701)
Q Consensus 1543 ----------~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~ 1589 (1701)
.+.+.+..++.+++.+++...++++.+..+..+++.+...+.+++.+
T Consensus 81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=86.86 E-value=13 Score=37.87 Aligned_cols=85 Identities=13% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHH
Q 000301 1390 DEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKS------------------EMRAEMDRFAREKKELSEQMRE 1451 (1701)
Q Consensus 1390 ~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~elka------------------Eleee~~rL~~ek~eLE~~l~E 1451 (1701)
..+..-...++.++..+..++..|..++.+.+.++.++.. ...+-+..|..++..++.++..
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~ 81 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKR 81 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 000301 1452 VESQLEWLRSERDDEIAKLTTEKKVLQ 1478 (1701)
Q Consensus 1452 LE~rLe~l~~E~Ee~~~kLq~EKk~Lq 1478 (1701)
++.++. +.+.++..++.+.++++
T Consensus 82 l~~~~~----~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 82 LERQEE----DLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHh
No 484
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=86.69 E-value=1 Score=54.13 Aligned_cols=148 Identities=14% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000301 1426 RLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKE 1505 (1701)
Q Consensus 1426 elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kE 1505 (1701)
.+|+|.-.-+=.|......-..-+..+.+||. .+|.....|+.-...+...|.+++.+|..+..... ..+.+
T Consensus 7 ~QRREVV~LILslTss~s~s~GDLs~I~eRLs----aLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~----~~~s~ 78 (326)
T PF04582_consen 7 SQRREVVGLILSLTSSISTSPGDLSPIRERLS----ALESSVASLSDSVSSLSSTISDLSSDLQDLASSLA----DMTSE 78 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhhcccCCCCCCcccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1506 KNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMES 1581 (1701)
Q Consensus 1506 K~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~ 1581 (1701)
.+.+..++..++..+..+...+..+.......+..+..|+..+..++..+.+++.....+.-+|..|+.++.++|.
T Consensus 79 L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 79 LNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
No 485
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.62 E-value=1e+02 Score=39.16 Aligned_cols=239 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHHH-
Q 000301 1446 SEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKR----------DELKRVVKEKNALAERLK- 1514 (1701)
Q Consensus 1446 E~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kq----------eelkkL~kEK~aL~eklk- 1514 (1701)
+.+..+-+.++. ..+.+..+|+.+.+.....+..+...--.+....+ +.++.....-+.+-..+.
T Consensus 29 D~~FE~~~~~f~----~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p~~~g~~~l~~v~~~~d~l~~d~~~ 104 (460)
T KOG3771|consen 29 DEQFEQEERNFN----KQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEPDWPGRDYLQAVADNDDLLWKDLDQ 104 (460)
T ss_pred chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1515 SAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLE 1594 (1701)
Q Consensus 1515 ~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe 1594 (1701)
.+.+.+..==.+.-..-.+.+.+=..+-...-+.+..+...+.+++.+++-+..+++ .|.+++..|+..++|.
T Consensus 105 ~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~kd~~k~~K-------AeeEl~~Aq~~fE~lN 177 (460)
T KOG3771|consen 105 KLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKKKDEAKLAK-------AEEELEKAQQVFEELN 177 (460)
T ss_pred HHHHhhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHhcCCChhhhHH-------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHh----hccCchhhhHHHhhH------HHH----HHHHHHHHHHhhh----hhhhhhhcCCCCCCCCCCCCCCC
Q 000301 1595 AQLQEEMS----RHAPLYGAGLEALSM------KEL----ETLARIHEEGLRQ----IHTLQQCKGSPAASPLVSPHTLP 1656 (1701)
Q Consensus 1595 ~~l~eE~e----~h~~~~~~~Le~~~~------~e~----e~L~~~~~~~~k~----ir~lq~~~~~~~~~~~~~~~~~~ 1656 (1701)
.+|.+||= .|-.+|.-.++.... +++ .+|.....++.++ +.-...+.|.....-...++.+.
T Consensus 178 ~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~dqh~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (460)
T KOG3771|consen 178 NELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYDVLDKLFDQHSDKVFTYRAQPSDALPKLEALSPSPT 257 (460)
T ss_pred HHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhccccccccchhccCCCCC
Q ss_pred CC--CCCCCCCCCCcccCCC--CcCcCCCccccCCccCCCCCCC
Q 000301 1657 HN--HGLYPTAPPPLAVGLP--HSLVPNGVGIHGNGHVNGGVGP 1696 (1701)
Q Consensus 1657 ~~--~~~~~~~~p~~~~~~~--~~~~~~~~~~h~~g~~~~~~~~ 1696 (1701)
+. .+|..|++|+..-+-| |...| -..--.||-.-+-|.|
T Consensus 258 ~~~sspl~~pt~~s~~~~~~a~~~~~p-sps~~~~g~a~~~~~p 300 (460)
T KOG3771|consen 258 DGGSSPLTSPTSRSSLGQEPASPAALP-SPSQASAGAASEEVKP 300 (460)
T ss_pred CcCCCCCCCCCCCCCCCCCCCCccCCC-CCccccCCcccccCCC
No 486
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=86.62 E-value=15 Score=39.04 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1474 KKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQ 1553 (1701)
Q Consensus 1474 Kk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee 1553 (1701)
|+.|.+-+..+-.+|+++-. .+..-|..|.+||..+...+++..+-.+..+.+...+.+-...+..+++.++.
T Consensus 38 rr~m~~A~~~v~kql~~vs~-------~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSE-------SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 000301 1554 TVGQTEGEKREKEE 1567 (1701)
Q Consensus 1554 ~i~~lek~k~~LE~ 1567 (1701)
.+..++....++|.
T Consensus 111 ~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 111 MVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHHHhc
No 487
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=86.47 E-value=1.3e+02 Score=40.24 Aligned_cols=470 Identities=13% Similarity=0.066 Sum_probs=0.0
Q ss_pred cCCCCCCCCccchhhhhhhccccchhhHHHHHHHhcCCchhHHHHHHHHHH---HhcCcchhHHHHHHHHHHhhhcccCC
Q 000301 1179 FGENGPTSDSLHVMDEQAFRATRHFSDIYILIEMLSIPCIAVEAAQTFERA---VARGTIVAQSIALVLERRLAQRLNFN 1255 (1701)
Q Consensus 1179 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~s~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~ 1255 (1701)
...+-.+|.+++.+ .+.-+..=++......|..+ .+..|-.+.++.| .++-.|+ |.+.|-.-.|.++.-+..
T Consensus 66 sn~d~pt~q~~q~~---~~~ls~~e~~~~F~~~~~dm-ni~eekr~pll~K~~~ek~kmis-~~l~~k~~~~~s~ne~~~ 140 (1102)
T KOG1924|consen 66 SNNDYPTAQGLQDI---GFSLSSNEVLELFELMGEDM-NINEEKRKPLLDKDLPEKRKMIS-QYLQMKMMIRKSDNEAKG 140 (1102)
T ss_pred cccCCcccccHHHH---hhhccHHHHHHHHHHHhhhc-cccHhhhhhhhhcCchHHHHHHH-HHHHHHHHHhhhhhhhcc
Q ss_pred CCcccccccccccccccccccccchhhhHHHHHHHHHhcCcChhHHHHHHH---HHHHHHhh---------cCCchhHHH
Q 000301 1256 PGFVAENFQHTDVVVEGEQLIVQRDDFTCVLGLAETLALSRDIRVREFVKI---LYTILLKW---------YPDESYRGR 1323 (1701)
Q Consensus 1256 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~la~~l~~s~~~~v~~f~~~---~y~~~f~~---------~~~~~~~~~ 1323 (1701)
+..-++.-..+- +.. .....+|-+|-=+|...+=+-|..||-- +|-.+.+- | |.-.++|
T Consensus 141 ~s~eyV~~l~~g--l~t------~~l~~CleslRVsL~~npVSwvn~Fgvegl~ll~~~Lkrl~dsk~~~~~-~~k~~~e 211 (1102)
T KOG1924|consen 141 SSPEYVVELRSG--LST------KKLLECLESLRVSLTSNPVSWVNKFGVEGLGLLLDVLKRLRDSKVGSKL-DIKNLQE 211 (1102)
T ss_pred CChHHHHHHHcc--ccc------ccHHHHHHHHhhhhcCCccHHHHHhhhhhHHHHHHHHHHHHhhhhhhhh-HHHHHHH
Q ss_pred HHHHHHHhhcCCCCCcccccchHHHHHHHHhhhccccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH---
Q 000301 1324 MLKRLVDRATSTTESSRGVDLDLEILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERK--- 1400 (1701)
Q Consensus 1324 ~~~~lv~~~~s~~~~~~ev~~~l~vL~~l~~~~~~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle--- 1400 (1701)
+++-|-+-.-+.-.--.=..-+--+|+.+....+..=-=+.++++--...---..+...+++-+.-..+.+. +..+
T Consensus 212 iIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~-~~veRF~ 290 (1102)
T KOG1924|consen 212 IIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEA-KPVERFR 290 (1102)
T ss_pred HHHHHHHHhccccceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhh-cchhhhh
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000301 1401 ------AEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEK 1474 (1701)
Q Consensus 1401 ------~e~~~le~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EK 1474 (1701)
.-.+...-...-++ -+........++-.-+.-+.+-++.-+.+.=..+.+++++.. +...+.-.|.
T Consensus 291 piv~gl~~~e~~~l~vacmq-~INal~t~p~dldfRlhlR~E~mr~gL~~~l~~l~~i~n~~l-------dvqlkvfdE~ 362 (1102)
T KOG1924|consen 291 PIVEGLDFLEKQQLQVACMQ-FINALVTSPSDLDFRLHLRSEFMRDGLHKYLPDLTEINNDIL-------DVQLKVFDEH 362 (1102)
T ss_pred hHHHHHhccchHHHHHHHHH-HHHHhcCCHHHhhHHHHHHHHHHHHhHHHHHHHhhhhccHHH-------HHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1475 KVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAA---------RKRFDEELKRYATENVTREEICQSLQ 1545 (1701)
Q Consensus 1475 k~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~e---------i~~lEeel~kL~kE~k~lEE~~r~Le 1545 (1701)
+ ++.+.++...++....+.. .+..=-+-+...++...+| +.-..+...--..=.+..|+.+.++-
T Consensus 363 ~--e~Dl~el~~rledir~emD----d~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIv 436 (1102)
T KOG1924|consen 363 K--EDDLEELSGRLEDIRAEMD----DANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIV 436 (1102)
T ss_pred h--hhhHHHHHhHHHhhhhhhc----cHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHhhHHHHHHH
Q 000301 1546 DEVRRLTQTVGQTEGEKREKEEQVARCEAY--IDGMESKLQACQQYIHTLEAQLQEEMSRHAPLYGAGLEALSMKELETL 1623 (1701)
Q Consensus 1546 ~el~elee~i~~lek~k~~LE~~i~rLE~~--l~~lE~eL~e~q~~I~eLe~~l~eE~e~h~~~~~~~Le~~~~~e~e~L 1623 (1701)
--....-=..+.-..--..+..-|+++..+ ..+.+.+..+.+..+.......++ ..+-+++.+
T Consensus 437 lHr~~~DPdf~yr~~l~id~~~liD~~vdkak~eeseqkA~e~~kk~~ke~ta~qe------------~qael~k~e--- 501 (1102)
T KOG1924|consen 437 LHRTGMDPDFKYRFRLDIDLTELIDKMVDKAKAEESEQKAAELEKKFDKELTARQE------------AQAELQKHE--- 501 (1102)
T ss_pred HhcCCCCCCcchhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHHHHHhh---
Q ss_pred HHHHHHHhhhhhhhhhhcCCCCCCC--CCCCCCCCCCCCCCCCCCCCcccCCCCcCcCCCccc-----cCCccCCCCCCC
Q 000301 1624 ARIHEEGLRQIHTLQQCKGSPAASP--LVSPHTLPHNHGLYPTAPPPLAVGLPHSLVPNGVGI-----HGNGHVNGGVGP 1696 (1701)
Q Consensus 1624 ~~~~~~~~k~ir~lq~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-----h~~g~~~~~~~~ 1696 (1701)
-+|+++|+.+.+-.++- ...-...|-++++||+.-++.+.||||+-+|-|.|. -+-|-++|--.|
T Consensus 502 --------~Ki~~l~ae~~al~s~~~~~~~~~~iP~PP~~pp~gG~g~pppPppPPlpggag~PPPPpplPg~aG~PPpP 573 (1102)
T KOG1924|consen 502 --------EKIKLLEAEKQALSSPSQLLPIDGGIPPPPPLPPTGGTGPPPPPPPPPLPGGAGPPPPPPPLPGIAGGPPPP 573 (1102)
T ss_pred --------hhcccCchhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCCcc
Q ss_pred CCCC
Q 000301 1697 WFNH 1700 (1701)
Q Consensus 1697 ~~~~ 1700 (1701)
.=++
T Consensus 574 pppp 577 (1102)
T KOG1924|consen 574 PPPP 577 (1102)
T ss_pred CCCC
No 488
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=86.45 E-value=14 Score=41.56 Aligned_cols=88 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1498 ELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYID 1577 (1701)
Q Consensus 1498 elkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~ 1577 (1701)
.+...+..+..|+.+..-+++.|...+++.++|..+.........+....-...+.++..|+.++.....++..++..++
T Consensus 99 ~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~ 178 (192)
T PF11180_consen 99 RLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVR 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 000301 1578 GMESKLQA 1585 (1701)
Q Consensus 1578 ~lE~eL~e 1585 (1701)
.|+...++
T Consensus 179 ~Lq~q~~~ 186 (192)
T PF11180_consen 179 QLQRQANE 186 (192)
T ss_pred HHHHHhcC
No 489
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=86.43 E-value=13 Score=46.05 Aligned_cols=179 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 000301 1397 DERKAEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKV 1476 (1701)
Q Consensus 1397 kEle~e~~~le~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~ 1476 (1701)
+.++++.+.+..-.-.|...-++.+=++..+-..--+++.+|-+++++..=+=----..|..++.+.++-.+.+++.+..
T Consensus 67 r~leeEqerL~ssLlaLsSHFAqVQfRirQ~vea~p~er~~LLrdLedFAF~Gcpd~~~lq~~~s~~~~~~~~lekq~e~ 146 (621)
T KOG3759|consen 67 RQLEEEQERLNSSLLALSSHFAQVQFRIRQMVEADPSERLKLLRDLEDFAFKGCPDMNELQRLRSESESGNDVLEKQNER 146 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCcccccccccccccccchhhhhhcch
Q ss_pred HHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1477 LQDRLHDAETQLSQLKSRKRD-------ELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVR 1549 (1701)
Q Consensus 1477 LqerI~eLE~qLe~le~~kqe-------elkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~ 1549 (1701)
-.+-|..|++|++++|.--=+ +-.-|++.|..+++=.++++-..+ +.++..| +.+++..+.+.
T Consensus 147 qkeLi~QLk~Ql~dLE~~AYe~Geg~LPq~viLekQk~ilDeLr~Kl~lnl~-----i~~lste-----elr~qVD~A~~ 216 (621)
T KOG3759|consen 147 QKELIKQLKEQLEDLERTAYENGEGELPQTVILEKQKAILDELREKLELNLD-----IDKLSTE-----ELRRQVDDALK 216 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhhccCC-----cccccHH-----HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1550 RLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQA 1585 (1701)
Q Consensus 1550 elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e 1585 (1701)
++---.+.-++...+|..||.+||.-++=++.+..+
T Consensus 217 q~VnP~k~KeQLV~QLkTQItDLErFInFlQ~e~~e 252 (621)
T KOG3759|consen 217 QLVNPFKEKEQLVDQLKTQITDLERFINFLQDEVGE 252 (621)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 490
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=86.37 E-value=79 Score=37.53 Aligned_cols=296 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred hccccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1356 EQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEM 1435 (1701)
Q Consensus 1356 ~~~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~elkaEleee~ 1435 (1701)
+...+||+-+++...+.. ...+.---++-.++..+-..+..++....-.|.++++++++.....+.++.+.
T Consensus 16 e~daIkPl~qiln~QeKk--------~kaaDNeVEkean~lidk~deqiKaKkkLmV~aKkheaL~kl~eSaeqe~aek- 86 (421)
T KOG4429|consen 16 EEDAIKPLRQILNNQEKK--------IKAADNEVEKEANKLIDKKDEQIKAKKKLMVLAKKHEALEKLEESAEQEKAEK- 86 (421)
T ss_pred HHHHhhhHHHHHhhHHHH--------HHhhhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcch-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHH
Q 000301 1436 DRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKR----DELKRVVKEKNALAE 1511 (1701)
Q Consensus 1436 ~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kq----eelkkL~kEK~aL~e 1511 (1701)
++..+-.++..-..+++.....-=.+.-.....+.+.+.-++..-..++++++++- ..+-+.......+-.
T Consensus 87 -----EkrKfa~klkKskdklekedddY~qknmag~kqRlk~ENtLekc~eSi~elEkeRia~~cnaL~qYkqhIelfG~ 161 (421)
T KOG4429|consen 87 -----EKRKFALKLKKSKDKLEKEDDDYVQKNMAGEKQRLKTENTLEKCVESIEELEKERIAHCCNALGQYKQHIELFGP 161 (421)
T ss_pred -----HHHHHHHHhhhhHHHHhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q ss_pred HHHHHHHH-------------HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1512 RLKSAEAA-------------RKRFDEELKRYATENVTR-----------------EEICQSLQDEVRRLTQTVGQTEGE 1561 (1701)
Q Consensus 1512 klk~lE~e-------------i~~lEeel~kL~kE~k~l-----------------EE~~r~Le~el~elee~i~~lek~ 1561 (1701)
.++..-.+ ....-++..-+..+.+.- +.+++-|+-.+-.|...++.+.+.
T Consensus 162 nLrqc~eq~hcaiekad~ekd~daimeeqailsteakneflLiD~faEd~~eaMdkeRRkqlLepkl~rLdrdiekaskd 241 (421)
T KOG4429|consen 162 NLRQCFEQHHCAIEKADDEKDEDAIMEEQAILSTEAKNEFLLIDLFAEDFGEAMDKERRKQLLEPKLGRLDRDIEKASKD 241 (421)
T ss_pred hHHHHHHHhhhhHhhhcccccHHHHHHhcccccccccceeeehhhhhhchhhhhhHHHHHHhhhhhhhhhHHHHHHhhcc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCchhhhHHHhhHHHHHHHHHHHHH----------H
Q 000301 1562 KREKEEQVARCEAYIDGMESKL-QACQQYIHTLEAQLQEEMSRHAPLYGAGLEALSMKELETLARIHEE----------G 1630 (1701)
Q Consensus 1562 k~~LE~~i~rLE~~l~~lE~eL-~e~q~~I~eLe~~l~eE~e~h~~~~~~~Le~~~~~e~e~L~~~~~~----------~ 1630 (1701)
+..||.++.-....-.=-..+- .+...-..+---++.= +|++.-+--.-|+.+-.+ -
T Consensus 242 keglermlklYnstssfsdaksqaDtaalmden~lkLdf------------iEa~sYKLndmiaeld~~pnq~~HpcSn~ 309 (421)
T KOG4429|consen 242 KEGLERMLKLYNSTSSFSDAKSQADTAALMDENILKLDF------------IEALSYKLNDMIAELDGGPNQGFHPCSNF 309 (421)
T ss_pred hhHHHHHHHHhccccccccchhhhHHHHhccchhHHHHH------------HHHHHHHHHHHHHHHhCCCCCCCCcchhh
Q ss_pred hhhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcCcCCC
Q 000301 1631 LRQIHTLQQCKGSPAASPLVSPHTLPHNHGLYPTAPPPLAVGLPHSLVPNG 1681 (1701)
Q Consensus 1631 ~k~ir~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 1681 (1701)
+-+||+-++-.. +--.+-|-+.....+|||--..-+..-||+-.|+|
T Consensus 310 ifk~kdKeh~hp----~t~is~Pfl~dnle~i~p~aSm~aqsapgSpr~a~ 356 (421)
T KOG4429|consen 310 IFKIKDKEHGHP----MTIISIPFLGDNLELIPPCASMEAQSAPGSPRGAG 356 (421)
T ss_pred hHhhhccccCCc----eEEEeeccccccccCCCccccccccCCCCCCCCCc
No 491
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.31 E-value=77 Score=37.32 Aligned_cols=219 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 000301 1369 EVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKSEMRA-------EMDRFARE 1441 (1701)
Q Consensus 1369 qe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~elkaElee-------e~~rL~~e 1441 (1701)
+++..++.+..++.++...+-+.+..++. ++++.+.|+..+....+.++-.++.++++++- ..-.+-.+
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~Q----dLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gte 84 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQ----DLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTE 84 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHH----HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccch
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHH
Q 000301 1442 KKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKR----------DELKRVVKEKNALAE 1511 (1701)
Q Consensus 1442 k~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kq----------eelkkL~kEK~aL~e 1511 (1701)
++.|-+-|++...+-. .+....+.|-..+.+|...++-+...+.+.+.+++ ++--+-..+......
T Consensus 85 rqdLaa~i~etkeeNl----kLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanfic 160 (389)
T KOG4687|consen 85 RQDLAADIEETKEENL----KLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANFIC 160 (389)
T ss_pred hhHHHHHHHHHHHHhH----hhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1512 RLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTE---------GEKREKEEQVARCEAYIDGMESK 1582 (1701)
Q Consensus 1512 klk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~le---------k~k~~LE~~i~rLE~~l~~lE~e 1582 (1701)
.++.+...-..+.-.+.-.-.++..+--++..++....++..++--+- ..++.+-..-.-|-+.+.-.+++
T Consensus 161 ~~EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLnhELfvaLnadkrhpr~~DiDgll~ENkfLhaklkiadeE 240 (389)
T KOG4687|consen 161 AHEGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELFVALNADKRHPRAEDIDGLLAENKFLHAKLKIADEE 240 (389)
T ss_pred HHHHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCCCchhhhhHHHHHhhHHHHHHhcccHHH
Q ss_pred HHHHHHHHHHHHH
Q 000301 1583 LQACQQYIHTLEA 1595 (1701)
Q Consensus 1583 L~e~q~~I~eLe~ 1595 (1701)
++-....|....+
T Consensus 241 lEliK~siaKYKq 253 (389)
T KOG4687|consen 241 LELIKMSIAKYKQ 253 (389)
T ss_pred HHHHHHHHHHHHH
No 492
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=86.21 E-value=33 Score=41.08 Aligned_cols=157 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH--------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000301 1511 ERLKSAEAARKRFDEE--------LKRY-ATENVTREEICQSLQDEVRRLTQTVGQTEGEKRE-KEEQVARCEAYIDGME 1580 (1701)
Q Consensus 1511 eklk~lE~ei~~lEee--------l~kL-~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~-LE~~i~rLE~~l~~lE 1580 (1701)
+..+++-+-...++.. +..+ .++.+++.-.+++|++++-...-+.....+.+.+ +...+.+.|+.++..|
T Consensus 114 esm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kkkk~~K~~dEelrqA~eKfEESkE~aE 193 (366)
T KOG1118|consen 114 ESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKKKKQGKIKDEELRQALEKFEESKELAE 193 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHhhccCchhhhHHHhhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCC--CCC---
Q 000301 1581 SKLQACQ----QYIHTLEAQLQEEMSRHAPLYGAGLEALSMKELETLARIHEEGLRQIHTLQQCKGSPAASP--LVS--- 1651 (1701)
Q Consensus 1581 ~eL~e~q----~~I~eLe~~l~eE~e~h~~~~~~~Le~~~~~e~e~L~~~~~~~~k~ir~lq~~~~~~~~~~--~~~--- 1651 (1701)
...-.+. +|++.|.+-++.++.-|++ -..-|+.+..++..+||+.-+|=.+-..|. +++
T Consensus 194 ~sM~nlle~d~eqvsqL~~Li~aqLdfhrq------------s~~iL~~l~~~l~~r~r~a~~~prrey~p~~~~an~f~ 261 (366)
T KOG1118|consen 194 DSMFNLLENDVEQVSQLSALIQAQLDFHRQ------------STQILQELQMKLFSRIRDASSQPRREYVPRSVLANEFA 261 (366)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhhhhhhhhcCchhhcCCcccccccCC
Q ss_pred CCCCC--CCCCCCCCCCC------------CcccCCCCcCcC
Q 000301 1652 PHTLP--HNHGLYPTAPP------------PLAVGLPHSLVP 1679 (1701)
Q Consensus 1652 ~~~~~--~~~~~~~~~~p------------~~~~~~~~~~~~ 1679 (1701)
|-+-| ...+++-++.| ++.-+||+++.+
T Consensus 262 p~~~p~~~~g~~s~T~~t~~~ass~~~is~~p~~~p~rs~s~ 303 (366)
T KOG1118|consen 262 PSGPPIQLNGKLSKTTSTPQSASSPSNISPKPPSTPNRSASQ 303 (366)
T ss_pred CCCCccccCCCCCcCccCccccCCcccCCCCCCCCCCcccCc
No 493
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=86.12 E-value=33 Score=37.91 Aligned_cols=120 Identities=14% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000301 1433 AEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAER 1512 (1701)
Q Consensus 1433 ee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~ek 1512 (1701)
+-++.+..+..+.+..+..+....+ .+..+..+-...++..+.++..++....+........+..++.+...|..+
T Consensus 36 E~Le~~~~~n~~~~~e~~~L~~d~e----~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~ 111 (158)
T PF09744_consen 36 ELLESLASRNQEHEVELELLREDNE----QLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELK 111 (158)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1513 LKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVG 1556 (1701)
Q Consensus 1513 lk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~ 1556 (1701)
++++..+...+++.-..+.++...+.++-+++-..+.+.-++.+
T Consensus 112 ~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k 155 (158)
T PF09744_consen 112 LKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQK 155 (158)
T ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=86.03 E-value=15 Score=43.21 Aligned_cols=100 Identities=16% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000301 1435 MDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLK 1514 (1701)
Q Consensus 1435 ~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk 1514 (1701)
+..|...+++.+.++++-|.+|. |+..++.++++. =++++....|+||+-.|++++ +++|+.-.+++...|-
T Consensus 70 iRHLkakLkes~~~l~dRetEI~----eLksQL~RMrED--WIEEECHRVEAQLALKEARkE--IkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEID----ELKSQLARMRED--WIEEECHRVEAQLALKEARKE--IKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1515 SAEAARKRFDEELKRYATENVTREEICQSLQ 1545 (1701)
Q Consensus 1515 ~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le 1545 (1701)
+...-+..+--+++--++. +|..++.++
T Consensus 142 ekDkGiQKYFvDINiQN~K---LEsLLqsME 169 (305)
T PF15290_consen 142 EKDKGIQKYFVDINIQNKK---LESLLQSME 169 (305)
T ss_pred hhhhhHHHHHhhhhhhHhH---HHHHHHHHH
No 495
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=85.94 E-value=43 Score=37.32 Aligned_cols=118 Identities=9% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHhhhccccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1348 ILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRL 1427 (1701)
Q Consensus 1348 vL~~l~~~~~~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~el 1427 (1701)
||..++.- =..|||.+++.+..+....+++...+...+.+...++.++.+.....+...-++.-..+-++..+
T Consensus 30 iL~~lL~~--~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~----- 102 (173)
T PRK13453 30 VLLALLKK--FAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQE----- 102 (173)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 000301 1428 KSEMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHD 1483 (1701)
Q Consensus 1428 kaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~e 1483 (1701)
+.+..-+.+.+..+.+.+.+++ .+.+.....++.+..++--.+..
T Consensus 103 --------~~~~~A~~ea~~~~~~A~~~I~---~ek~~a~~~l~~ei~~lA~~~a~ 147 (173)
T PRK13453 103 --------QIIHEANVRANGMIETAQSEIN---SQKERAIADINNQVSELSVLIAS 147 (173)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
No 496
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=85.94 E-value=35 Score=34.90 Aligned_cols=101 Identities=13% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHH
Q 000301 1389 EDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRLKSEMRAEMDRFAREKKELSEQMR-EVESQLEWLRSERDDEI 1467 (1701)
Q Consensus 1389 e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~elkaEleee~~rL~~ek~eLE~~l~-ELE~rLe~l~~E~Ee~~ 1467 (1701)
.+++......+..+...+...+..|...+...+......+..+....++|..-+.+-+..+- +++..-........+..
T Consensus 2 k~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~ 81 (127)
T smart00502 2 REALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQL 81 (127)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000301 1468 AKLTTEKKVLQDRLHDAETQLS 1489 (1701)
Q Consensus 1468 ~kLq~EKk~LqerI~eLE~qLe 1489 (1701)
+.++.....+..-+..++..+.
T Consensus 82 ~~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 82 ESLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 497
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=85.91 E-value=81 Score=37.26 Aligned_cols=170 Identities=12% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----H
Q 000301 1440 REKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLK----S 1515 (1701)
Q Consensus 1440 ~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk----~ 1515 (1701)
.+=.++-..+..++..|. ..+.-.+++..+..++.+...+...-....-.... .+..-.+.+...+. .
T Consensus 54 ~eF~Emkey~d~L~~~L~----~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~----~L~~~L~~~a~~~d~~~~~ 125 (243)
T cd07666 54 EEFTEMNEYVEAFSQKIN----VLDKISQRIYKEQREYFEELKEYGPIYTLWSASEE----ELADSLKGMASCIDRCCKA 125 (243)
T ss_pred HHHHHHHHHHHHHHHHhh----hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccch----hhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1516 AEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEA 1595 (1701)
Q Consensus 1516 lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~~I~eLe~ 1595 (1701)
+..+...+.+.+...-++...+-+.++.+-.++..++..++.+...+.+...++.+++.++++++.+++.....|.
T Consensus 126 ~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~~~k---- 201 (243)
T cd07666 126 TDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECANNALK---- 201 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred HHHHHHhhccCchhhhHHHhhHHHHHHHHHHHHH-Hhhhhh
Q 000301 1596 QLQEEMSRHAPLYGAGLEALSMKELETLARIHEE-GLRQIH 1635 (1701)
Q Consensus 1596 ~l~eE~e~h~~~~~~~Le~~~~~e~e~L~~~~~~-~~k~ir 1635 (1701)
.| +++-...+-..++.+... +.++|+
T Consensus 202 --~e------------~~Rf~~~k~~D~k~~~~~yae~~i~ 228 (243)
T cd07666 202 --AD------------WERWKQNMQTDLRSAFTDMAENNIS 228 (243)
T ss_pred --HH------------HHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=85.81 E-value=15 Score=36.70 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1476 VLQDRLHDAETQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTV 1555 (1701)
Q Consensus 1476 ~LqerI~eLE~qLe~le~~kqeelkkL~kEK~aL~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i 1555 (1701)
.+++-+..++..|..|+......+....+. ..++.++..+..++.++.+++.+...+...+|+..+++..+|...-+.+
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR-DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 000301 1556 GQT 1558 (1701)
Q Consensus 1556 ~~l 1558 (1701)
...
T Consensus 84 r~v 86 (89)
T PF13747_consen 84 RAV 86 (89)
T ss_pred HHH
No 499
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=85.80 E-value=92 Score=37.90 Aligned_cols=160 Identities=14% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000301 1429 SEMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRLHDAETQLSQLKSRKRDELKRVVKEKNA 1508 (1701)
Q Consensus 1429 aEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI~eLE~qLe~le~~kqeelkkL~kEK~a 1508 (1701)
.+++++--.+...+.++-.++++|..- +....+.++...+.+.++.|.+++.++..++...+.--..+......
T Consensus 44 EQAr~~A~~fA~~ld~~~~kl~~Ms~~------ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~ 117 (301)
T PF06120_consen 44 EQARQEAIEFADSLDELKEKLKEMSST------QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGIT 117 (301)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1509 LAERLKSAEAARKRFDEELKRYATENVTREEICQSLQDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQ 1588 (1701)
Q Consensus 1509 L~eklk~lE~ei~~lEeel~kL~kE~k~lEE~~r~Le~el~elee~i~~lek~k~~LE~~i~rLE~~l~~lE~eL~e~q~ 1588 (1701)
....+.+--..+.+.-+++.++..+....++++.+..+.....+..+..++.++..+ +.+...+..++-.-+....-
T Consensus 118 ~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~---ir~~~~e~~~~~~sl~~~~g 194 (301)
T PF06120_consen 118 ENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRIDL---IRQKAAEQAGAYNSLKGMNG 194 (301)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHH
Q 000301 1589 YIHTLEAQL 1597 (1701)
Q Consensus 1589 ~I~eLe~~l 1597 (1701)
+-.++...+
T Consensus 195 ~~~ef~~l~ 203 (301)
T PF06120_consen 195 AHAEFNRLM 203 (301)
T ss_pred cHHHHHHHH
No 500
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=85.76 E-value=39 Score=38.02 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHhhhccccchhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000301 1348 ILVILVCEEQEIIRPVLSMLREVAELANVDRAALWHQLCASEDEIIRIRDERKAEISNMVREKAVFSQKLAESEAAGNRL 1427 (1701)
Q Consensus 1348 vL~~l~~~~~~~VKPlLq~lRqe~E~~~~e~e~L~~klk~~e~ele~lrkEle~e~~~le~Ek~~L~eqLee~E~al~el 1427 (1701)
||..++.- =.++|+.+++.+........++...+...+.+....+..+.++....+...-++...++.++..+
T Consensus 43 iL~~ll~k--~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~----- 115 (181)
T PRK13454 43 AIYFVLTR--VALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELD----- 115 (181)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 000301 1428 KSEMRAEMDRFAREKKELSEQMREVESQLEWLRSERDDEIAKLTTEKKVLQDRL 1481 (1701)
Q Consensus 1428 kaEleee~~rL~~ek~eLE~~l~ELE~rLe~l~~E~Ee~~~kLq~EKk~LqerI 1481 (1701)
+-+..-..+.+..+.+.+.+++ .+++.....++..-.++-..|
T Consensus 116 --------~~~~~A~~e~~~~~aea~~~I~---~~k~~a~~~l~~~a~~lA~~i 158 (181)
T PRK13454 116 --------VAIAKADAEIAAKAAESEKRIA---EIRAGALESVEEVAKDTAEAL 158 (181)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Done!