Query 000301
Match_columns 1701
No_of_seqs 628 out of 2854
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 17:03:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000301.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_79-83//hhsearch_pdb/000301hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s4w_B Protein FACD2, fanconi 1.0 1 1 784.4 31.5 448 761-1388 10-505 (1323)
2 3hqi_A Speckle-type POZ protei 1.0 1 1 233.2 10.2 185 424-622 5-202 (312)
3 2f1z_A Ubiquitin carboxyl-term 1.0 1 1 210.4 11.9 153 72-228 10-163 (522)
4 2foj_A Ubiquitin carboxyl-term 1.0 1 1 208.6 13.1 136 423-569 16-153 (155)
5 2f1z_A Ubiquitin carboxyl-term 1.0 1 1 207.1 11.3 131 258-400 30-163 (522)
6 2foj_A Ubiquitin carboxyl-term 1.0 1 1 202.0 12.8 137 88-228 14-151 (155)
7 4gjh_A TNF receptor-associated 1.0 1 1 201.3 8.5 140 423-564 21-173 (178)
8 4ghu_A TNF receptor-associated 1.0 1 1 200.6 8.5 138 258-398 39-188 (198)
9 4gjh_A TNF receptor-associated 1.0 1 1 200.5 10.8 141 256-397 21-173 (178)
10 3ivv_A Speckle-type POZ protei 1.0 1 1 199.0 11.6 134 421-565 6-144 (145)
No 1
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=1.00 E-value=1 Score=784.37 Aligned_cols=448 Identities=23% Similarity=0.364 Sum_probs=408.3
Q ss_pred HHHHHHHHHHHCCEEECCCCCCCCC---HHHHHHHH-------CCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 3579999886315000179999970---36788944-------0648789999731100158967885521873224988
Q 000301 761 EEDIVRNLLSRAGFHLTYGDNPSQP---QVTLREKL-------LMDAGAIAGFLTGLRVYLDDPAKAKRLLLPTKLSGSD 830 (1701)
Q Consensus 761 ~~~~f~~~l~~~g~~l~~g~~~~~~---q~~~~~~~-------~~~~~~i~~f~~gl~~~~~~~~~~~~~llp~~~~~~~ 830 (1701)
.+++|+.+|++||++|..|+.+|++ |+.|+.|| |.||..|++|++||+.||+|+++|++|||||.+.+++
T Consensus 10 ~~~~f~~~L~~aG~~L~~~~~~~~l~~d~~~f~~kl~~~L~~~~~yp~~v~~F~~gl~~~i~~~~~~~~~Llp~~~~~~~ 89 (1323)
T 3s4w_B 10 NGSVFVKLLKASGLTLKTGENQNQLGVDQVIFQRKLFQALRKHPAYPKVIEEFVNGLESYTEDSESLRNCLLSCERLQDE 89 (1323)
T ss_dssp -CCHHHHHHHHTTEECCCTTSCCEESSCTTHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHTTSHHHHHHHSSBCBC----
T ss_pred CCHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC
T ss_conf 50799999998397636799986012558999999999998589935799999999999946899999984777877765
Q ss_pred CCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86545678884468986304125599999999998762128999998889998899999898999898622223687656
Q 000301 831 GKKVAKTDESSPSVMNLLMGVKVLQQAIIDLLLDIMVECCQPSDGNYYGDSSDANSKPPLDANGGARPLEADRENGASES 910 (1701)
Q Consensus 831 ~~~~~~~~~~~~sl~~ll~~v~~lq~~ii~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1701)
+. +.+..+++|||++||+|++||++||++||+|||||+..+
T Consensus 90 ~~--~~~~~~~eSLiklLL~i~~LQ~~li~~Llekl~E~~~~~------------------------------------- 130 (1323)
T 3s4w_B 90 EA--SMGTFYSKSLIKLLLGIDILQPAIIKMLFEKVPQFLFES------------------------------------- 130 (1323)
T ss_dssp --------CCCCBHHHHHHHSTTTHHHHHHHHHHHHHHHHSCC-------------------------------------
T ss_pred CC--CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC-------------------------------------
T ss_conf 54--323533179999985882313899999999999998503-------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 54321002579989888764410247877531011289999999976778886532222358881357888989996531
Q 000301 911 AQFPLFERLDSGADDNSTTSAVQSSDLSGIDIAEKALPGQPIFPPETSAGGSLESASFRSKTKWPEQSAELLGLIVNSLR 990 (1701)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~ 990 (1701)
++.+|.++| |||+||||
T Consensus 131 ------------------------~~~~~~~l~---------------------------------------rLIl~QlR 147 (1323)
T 3s4w_B 131 ------------------------ENRDGINMA---------------------------------------RLIINQLK 147 (1323)
T ss_dssp ------------------------CCTTCCCHH---------------------------------------HHHHGGGT
T ss_pred ------------------------CCCCCCCHH---------------------------------------HHHHHHHH
T ss_conf ------------------------677666679---------------------------------------99999873
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHC
Q ss_conf 01266789999999983158999987203987741237740322116898258999999985028999853313876410
Q 000301 991 ALDGAVPQGCPEPRRRPQSAQKISLVLDKAPKHLQPDLVALVPKLVEHSEHPLAADALIERLQKSDAEPALRMPVFVALS 1070 (1701)
Q Consensus 991 ~ld~~~~~~~~~~~~~~~~~~k~~~~l~~~p~~lq~d~i~~~p~~~~~~~h~~~a~~l~~~l~~~~~~~~l~~p~~~als 1070 (1701)
|||++||+ +++++|||+||++||+++|+|||+++|+|+|||||+.||++|.++|+++ |+|++|||||||
T Consensus 148 wLD~ivd~--------~~l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds~H~~v~~~L~~lL~~~---~~L~~~iLdaLs 216 (1323)
T 3s4w_B 148 WLDRIVDG--------KDLTAQMMQLISVAPVNLQHDFITSLPEILGDSQHANVGKELGELLVQN---TSLTVPILDVFS 216 (1323)
T ss_dssp TCSCCSSH--------HHHHHHHHHHHHHSCTTTHHHHHHTHHHHSCGGGHHHHHHHHHHHHHHC---STTHHHHHHHHH
T ss_pred HHCCCCCH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC---CCHHHHHHHHHH
T ss_conf 52244788--------9999999999985869889999987588726252199999999997328---513777999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH------------------CCCC
Q ss_conf 3667968999999999965118999874010124310222124238999999999871------------------2988
Q 000301 1071 QLDFGSEVWERILLKSLELLTDSNDEPLAVTIDFIFKAASQCQHLPEAVRSVRVRLKN------------------LGAE 1132 (1701)
Q Consensus 1071 ~l~~~~~~~~~v~~~~~~~l~~~~~e~l~~~i~f~~~~~~~~~~~~~~~~~~r~~l~~------------------~~~~ 1132 (1701)
+|+|++++|++||+++|+.|+++++|+||++|+|||+++++- +++++|+++|.+|+. +|.+
T Consensus 217 ~L~Ls~~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~-~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~ 295 (1323)
T 3s4w_B 217 SLRLDPNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDT-TSLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLA 295 (1323)
T ss_dssp HSCCCHHHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSST-THHHHHHHHHHHHHCC---------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 088999999999999999852498154389999998738886-5999999999872763235613443345554135666
Q ss_pred CC---------HH---HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 88---------04---8898886440470058999986026867899878899865345899998874000123321024
Q 000301 1133 VS---------PC---VLDFLSKTVNSWGDVAETILRDIDCDDDFGDNCSTMPSGLFLFGENGPTSDSLHVMDEQAFRAT 1200 (1701)
Q Consensus 1133 ~~---------~~---~~~~~~~~v~~~~~~~e~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1200 (1701)
++ +| ++|+|+++|+++++++|||||+|++++++++
T Consensus 296 ~~~~~~~~s~~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~--------------------------------- 342 (1323)
T 3s4w_B 296 SSSGNQENSDKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAE--------------------------------- 342 (1323)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTT---------------------------------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC---------------------------------
T ss_conf 67765445552259999999999996083999999999737885122---------------------------------
Q ss_pred CCHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 63256999999831782-26899999999983274036789999999863102579875333445665211343211000
Q 000301 1201 RHFSDIYILIEMLSIPC-IAVEAAQTFERAVARGTIVAQSIALVLERRLAQRLNFNPGFVAENFQHTDVVVEGEQLIVQR 1279 (1701)
Q Consensus 1201 ~~~~d~~~l~~~~s~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1279 (1701)
|+++|+|||++||++++ .+++||++|+|||++|+|++|++++++.. |..|++
T Consensus 343 hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~---------------------------h~~vL~ 395 (1323)
T 3s4w_B 343 HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFST---------------------------HYLVLK 395 (1323)
T ss_dssp CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHH---------------------------HHHHHT
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---------------------------HHHHHH
T ss_conf 54269999999970770358889999999997388559999999973---------------------------089999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCC-
Q ss_conf 2366799989997128672488779999999973368860578999999974127898864432128899999741013-
Q 000301 1280 DDFTCVLGLAETLALSRDIRVREFVKILYTILLKWYPDESYRGRMLKRLVDRATSTTESSRGVDLDLEILVILVCEEQE- 1358 (1701)
Q Consensus 1280 ~~f~~~l~la~~l~~s~~~~v~~f~~~~y~~~f~~~~~~~~~~~~~~~lv~~~~s~~~~~~ev~~~l~vL~~l~~~~~~- 1358 (1701)
+||+++|.|||.|++|+|++|++||++||+++|++| |+|||||||++||+|+||| +..|||.+||||..|+...++
T Consensus 396 ~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f-d~~~qqeVl~~Lv~hi~sg--~~~eVd~ALdvL~~L~~~~~~~ 472 (1323)
T 3s4w_B 396 DICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF-DTYCQQEVVGALVTHVCSG--TEAEVDTALDVLLELIVLNASA 472 (1323)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHCCHHH
T ss_conf 999999999999884887799999999999999852-5044999999987533289--8188999999999997317887
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------432259988999999699999999999837
Q 000301 1359 ------IIRPVLSMLREVAELANVDRAALWHQLCAS 1388 (1701)
Q Consensus 1359 ------~VKPlLq~lRqeeE~~~~e~e~L~~klk~~ 1388 (1701)
++|++|+++..-... +++.++..+...
T Consensus 473 l~~~a~~l~giLD~l~~l~~~---QiRklf~iL~~l 505 (1323)
T 3s4w_B 473 MRLNAAFVKGILDYLENMSPQ---QIRKIFCILSTL 505 (1323)
T ss_dssp HHHTHHHHHGGGGGGGGCCHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHH
T ss_conf 757899999898762479989---999999999999
No 2
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=1.00 E-value=1 Score=233.20 Aligned_cols=185 Identities=23% Similarity=0.407 Sum_probs=145.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHCCCCCCEECCCCEEECCC---EEEEEEEECCCCC-CCCCEEEEEEEECCCCCCCCCEEE
Q ss_conf 873999999463223133310236894210882897571---5999999669999-999389999970699999998199
Q 000301 424 HMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNR---DCRLIVYPRGQSQ-PPCHLSVFLEVMDSRNTSSDWSCF 499 (1701)
Q Consensus 424 ~~~~~twkI~NFS~lk~l~k~~k~~G~~i~S~~F~vGG~---~WrL~iYP~G~~~-~~~yLSIYL~l~d~~~~~~~W~v~ 499 (1701)
..++|+|+|+|||.++. +.|.+++|++|.+||+ +|+|.+||+|++. .++|+|+||.|.+. ..|+++
T Consensus 5 ~~~~~~w~I~nfs~~~~------~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~ 74 (312)
T 3hqi_A 5 VKFSYMWTINNFSFCRE------EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVR 74 (312)
T ss_dssp EEEEEEEEETTGGGCCC------CTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEE
T ss_pred EEEEEEEEECCCCHHHH------CCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCC----CCCCEE
T ss_conf 99999999937101323------49975750876349988865999998998986678838999997378----998489
Q ss_pred EEEEEEEEECCCCCEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCC------
Q ss_conf 9999999958899701895-143222357767654453452121269899810999999999999802665545------
Q 000301 500 VSHRLSVVNQKMEEKSVTK-ESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSIMQD------ 572 (1701)
Q Consensus 500 a~f~L~Linq~~~~~sv~k-~~~~~F~~~~~~wG~~~FI~~~~L~d~~sGYLvdDsL~IeveV~Vik~t~~~~~------ 572 (1701)
++|+|+|+||+++...... ...++|.. ..+|||.+||+|++|+++++|||+||+++|+|+|.|++.......
T Consensus 75 a~~~~~l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~ 153 (312)
T 3hqi_A 75 AKFKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNM 153 (312)
T ss_dssp EEEEEEEECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSS
T ss_pred EEEEEEEEECCCCCCCCCCCCCCEECCC-CCCCCHHHHCCHHHHHCCCCCEECCCEEEEEEEEEEEECCCCCCCCCCCCC
T ss_conf 9999999957998334201577355789-997587886659886110037032998999999899840455556566666
Q ss_pred CCCCCCC-CCCCCCCCC-CCCCCEEEEEEEECCHHHHHHHHHCCCCCCCEEC
Q ss_conf 8888874-454576332-3697407999820205339886211335854000
Q 000301 573 FTDQDTE-STNAGSQMD-KIGKRSSFTWKVENFLSFKEIMETRKIFSKFFQA 622 (1701)
Q Consensus 573 ~~~~~s~-~~~~g~~ld-~~~~dvtFtw~ienFsahk~vLaaR~~~SpvF~~ 622 (1701)
+..|.+. ..+++.+++ ....|++|.+.++.|.+||.|||+| ||+|..
T Consensus 154 ~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~---S~~F~~ 202 (312)
T 3hqi_A 154 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAAR---SPVFSA 202 (312)
T ss_dssp CCCCCCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHH---CHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEEECCEEEEHHHHHHHHC---CHHHHH
T ss_conf 6789834799999998389987469998998985879999873---999998
No 3
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=210.42 Aligned_cols=153 Identities=24% Similarity=0.362 Sum_probs=128.5
Q ss_pred CCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCEEECCCEEECCEEEEEEEEECCCCCC-CCCCEEEEEEEECCCC
Q ss_conf 889999833478634787102599999900266779534328379938148999997899899-9995899999708999
Q 000301 72 TRDGSGGAQESVAVDRRGEHSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQA-LPGYISIYLQIMDPRG 150 (1701)
Q Consensus 72 ~~~~~~g~~~~~~vdr~~~~~~t~tw~I~NFS~lk~~~i~S~~F~vgG~~WrL~iYP~G~~~~-~~~~LSvYL~~~~~~~ 150 (1701)
++++++.+..-+..|.+.+..++|+|+|+|||.++ +.++|++|.+||++|||++||+|+..+ ..+|+|+||+|.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~w~I~nfS~~~-~~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~- 87 (522)
T 2f1z_A 10 LSDGHNTAEEDMEDDTSWRSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAES- 87 (522)
T ss_dssp ----------------CCCSEEEEEEEESSCTTCC-SCEECCCEEETTEEEEEEECBC--------CBBCEEEEESTTC-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHCC-CCEECCCEEECCEEEEEEEEECCCCCCCCCCEEEEEEEECCCC-
T ss_conf 44578872222344666567757999989954257-8435799899987469999958878899998699999844888-
Q ss_pred CCCCCCEEEEEEEEEEEECCCCCCEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEEEEEEECCC
Q ss_conf 999985299999999994689962254054021279999986689846001256878712219979999999995076
Q 000301 151 TSSSKWDCFASYRLAIVNLSDESKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNDAVLITADILILNES 228 (1701)
Q Consensus 151 ~~~~~W~v~a~f~l~LvNq~d~~~si~~~~~~~F~~~~~~wG~~~FI~~~~L~dp~~GFL~n~D~ltIea~V~Vl~e~ 228 (1701)
.+.+|.++|+|+|.|+|+.++..++.+...|+|+....+|||.+||+|++|.++++|||+| |+++|+|+|.|..+.
T Consensus 88 -~~~~w~v~a~f~l~l~n~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~n-D~l~i~~~V~v~~p~ 163 (522)
T 2f1z_A 88 -DSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDD-DKVTFEVFVQADAPH 163 (522)
T ss_dssp -CCSSCBEEEEEEEEECCTTCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBT-TBEEEEEEEEECCCB
T ss_pred -CCCCCEEEEEEEEEEECCCCCCCCEECCCEEEECCCCCCCCHHHEEEHHHHCCCCCCCCCC-CCEEEEEEEECCCCC
T ss_conf -8888069999999997588885424314303865899985321046766745866686358-857999986414664
No 4
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=1.00 E-value=1 Score=208.64 Aligned_cols=136 Identities=24% Similarity=0.474 Sum_probs=103.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHCCCCCCEECCCCEEECCCEEEEEEEECCCCC--CCCCEEEEEEEECCCCCCCCCEEEE
Q ss_conf 98739999994632231333102368942108828975715999999669999--9993899999706999999981999
Q 000301 423 GHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQ--PPCHLSVFLEVMDSRNTSSDWSCFV 500 (1701)
Q Consensus 423 ~~~~~~twkI~NFS~lk~l~k~~k~~G~~i~S~~F~vGG~~WrL~iYP~G~~~--~~~yLSIYL~l~d~~~~~~~W~v~a 500 (1701)
...++|+|+|+|||.+++ .++|+.|.+|||+|+|++||+|+.. .++|||+||+|... ..+.+|+++|
T Consensus 16 ~~~~~~~w~I~nfS~~~~----------~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a 84 (155)
T 2foj_A 16 RSEATFQFTVERFSRLSE----------SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHA 84 (155)
T ss_dssp CSEEEEEEEESSGGGCCS----------CEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEE
T ss_pred CCCCEEEEEECCHHHCCC----------CEECCCEEECCCCEEEEEEECCCCCCCCCCEEEEEEEECCC-CCCCCCEEEE
T ss_conf 877589999888531688----------46959999988347999997887778999889999980798-8998988999
Q ss_pred EEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 999999958899701895143222357767654453452121269899810999999999999802665
Q 000301 501 SHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSI 569 (1701)
Q Consensus 501 ~f~L~Linq~~~~~sv~k~~~~~F~~~~~~wG~~~FI~~~~L~d~~sGYLvdDsL~IeveV~Vik~t~~ 569 (1701)
+|+|+|+||.++..++.+...++|.....+|||.+||+|++|+++++|||+||+++|+|+|+|.+++|+
T Consensus 85 ~~~l~l~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~ 153 (155)
T 2foj_A 85 QAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 153 (155)
T ss_dssp EEEEEECCSSCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSS
T ss_pred EEEEEEECCCCCCCEEEECCEEEECCCCCCEEECCEEEHHHHCCCCCCCEECCEEEEEEEEEEECCCCC
T ss_conf 999999918999541893427896899999918876999995486799659999999999998176255
No 5
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=207.07 Aligned_cols=131 Identities=18% Similarity=0.292 Sum_probs=73.5
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC---CCCCEEEEEEECCCCCCCCCCCCEEEEEEEEE
Q ss_conf 768999992632220112557112894214884189999966878---86545789994267755568981899999999
Q 000301 258 SGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVN---GQEYLSMCLESKDMEKTVVSDRSCWCLFRMSV 334 (1701)
Q Consensus 258 ~g~ftwkI~nFS~l~e~~k~~~i~S~~F~vgG~~WrI~vYPnG~~---~~~yLSiyL~l~~~e~~~~~~w~~~~~ftl~L 334 (1701)
.++|+|+|.|||.+++ .++|++|.+||++|+|.+||+|.. .++|||+||.+.+.. ...+|.++++|+|.|
T Consensus 30 ~~~~~w~I~nfS~~~~-----~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~--~~~~w~v~a~f~l~l 102 (522)
T 2f1z_A 30 EATFQFTVERFSRLSE-----SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAES--DSTSWSCHAQAVLKI 102 (522)
T ss_dssp EEEEEEEESSCTTCCS-----CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTTC--CCSSCBEEEEEEEEE
T ss_pred CCEEEEEECCHHHCCC-----CEECCCEEECCEEEEEEEEECCCCCCCCCCEEEEEEEECCCC--CCCCCEEEEEEEEEE
T ss_conf 7579999899542578-----435799899987469999958878899998699999844888--888806999999999
Q ss_pred EECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 718999985232242344578889987755823322321224488874358817999899998540
Q 000301 335 LNQSPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFHVIKEI 400 (1701)
Q Consensus 335 LnQ~~g~~~~~k~~~~rF~~~~~~~~n~~~G~~~FI~~sdL~d~~~GYLvdDSliIev~V~Vi~e~ 400 (1701)
+||..+..+..+...++|.... .+|||.+||++++|.++++|||+||+++|+|+|.|..++
T Consensus 103 ~n~~~~~~~~~~~~~~~F~~~~-----~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~ 163 (522)
T 2f1z_A 103 INYRDDEKSFSRRISHLFFHKE-----NDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 163 (522)
T ss_dssp CCTTCGGGCEEEECCEEECGGG-----CEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred ECCCCCCCCEECCCEEEECCCC-----CCCCHHHEEEHHHHCCCCCCCCCCCCEEEEEEEECCCCC
T ss_conf 7588885424314303865899-----985321046766745866686358857999986414664
No 6
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=1.00 E-value=1 Score=201.98 Aligned_cols=137 Identities=23% Similarity=0.362 Sum_probs=116.9
Q ss_pred CCCCCEEEEEEEECCCCCCCCEEECCCEEECCEEEEEEEEECCCCC-CCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEE
Q ss_conf 8710259999990026677953432837993814899999789989-999958999997089999999852999999999
Q 000301 88 RGEHSAVCRWTVHNFPRIRARALWSKYFEVGGYDCRLLVYPKGDSQ-ALPGYISIYLQIMDPRGTSSSKWDCFASYRLAI 166 (1701)
Q Consensus 88 ~~~~~~t~tw~I~NFS~lk~~~i~S~~F~vgG~~WrL~iYP~G~~~-~~~~~LSvYL~~~~~~~~~~~~W~v~a~f~l~L 166 (1701)
.....++|+|+|+|||.++ +.++|++|.+||++|+|++||+|+.. +..+|+|+||+|... ..+.+|.++|+|+|.|
T Consensus 14 ~~~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~--~~~~~w~v~a~~~l~l 90 (155)
T 2foj_A 14 SWRSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE--SDSTSWSCHAQAVLKI 90 (155)
T ss_dssp TTCSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT--CCCSSCEEEEEEEEEE
T ss_pred CCCCCCEEEEEECCHHHCC-CCEECCCEEECCCCEEEEEEECCCCCCCCCCEEEEEEEECCC--CCCCCCEEEEEEEEEE
T ss_conf 7587758999988853168-846959999988347999997887778999889999980798--8998988999999999
Q ss_pred EECCCCCCEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEEEEEEECCC
Q ss_conf 94689962254054021279999986689846001256878712219979999999995076
Q 000301 167 VNLSDESKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNDAVLITADILILNES 228 (1701)
Q Consensus 167 vNq~d~~~si~~~~~~~F~~~~~~wG~~~FI~~~~L~dp~~GFL~n~D~ltIea~V~Vl~e~ 228 (1701)
+|++++..++.+...+.|.....+|||.+||+|++|+++++|||+| |+++|+|+|+|.++.
T Consensus 91 ~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~d-D~l~Ie~~V~V~~~t 151 (155)
T 2foj_A 91 INYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDD-DKVTFEVFVQADAPH 151 (155)
T ss_dssp CCSSCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBT-TBEEEEEEEEECCCB
T ss_pred ECCCCCCCEEEECCEEEECCCCCCEEECCEEEHHHHCCCCCCCEEC-CEEEEEEEEEEECCC
T ss_conf 9189995418934278968999999188769999954867996599-999999999981762
No 7
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=1.00 E-value=1 Score=201.30 Aligned_cols=140 Identities=16% Similarity=0.285 Sum_probs=75.8
Q ss_pred CCCCEEEEEECCCCCCHHHHHHCCCCCCEECCCCEEEC--CCEEEEEEEECCCCCC-CCCEEEEEEEECCCC-CCCCCEE
Q ss_conf 98739999994632231333102368942108828975--7159999996699999-993899999706999-9999819
Q 000301 423 GHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIG--NRDCRLIVYPRGQSQP-PCHLSVFLEVMDSRN-TSSDWSC 498 (1701)
Q Consensus 423 ~~~~~~twkI~NFS~lk~l~k~~k~~G~~i~S~~F~vG--G~~WrL~iYP~G~~~~-~~yLSIYL~l~d~~~-~~~~W~v 498 (1701)
...++|+|+|+|||.+++.. ..+.|.+++|++|.+| ||+|+|++||+|++.+ .+|+|+||+|.+..+ ....|++
T Consensus 21 ~~~g~~~w~I~~fS~~~~~~--~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v 98 (178)
T 4gjh_A 21 CYSGKLIWKVTDYRVKKREA--VEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPF 98 (178)
T ss_dssp CSSSEEEEEECCHHHHHHHH--HTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSC
T ss_pred CCCEEEEEEECCHHHHHHHH--HCCCCCEEECCCEEECCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCE
T ss_conf 11418999999889988663--2489828989983818999089999997999988898899999981588786669815
Q ss_pred EEEEEEEEEECCCCCEEEEEC-----CCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 999999999588997018951-----4322235----77676544534521212698998109999999999998
Q 000301 499 FVSHRLSVVNQKMEEKSVTKE-----SQNRYSK----AAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLIL 564 (1701)
Q Consensus 499 ~a~f~L~Linq~~~~~sv~k~-----~~~~F~~----~~~~wG~~~FI~~~~L~d~~sGYLvdDsL~IeveV~Vi 564 (1701)
+++|+|+|+||.++..++... ..+.|+. ...+|||.+||++++|+++++|||+||+++|+|+|.|.
T Consensus 99 ~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~ 173 (178)
T 4gjh_A 99 RQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLT 173 (178)
T ss_dssp CCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCT
T ss_pred EEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHEEEHHHHHCCCCCCCCCCEEEEEEEEEEC
T ss_conf 899999998079986324886305976431358764456770733414999963434596919999999999956
No 8
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=1.00 E-value=1 Score=200.63 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=62.9
Q ss_pred CCEEEEEECCCCCCCC---CCCCCCCCCCCCCCC--CCEEEEEEEECCCCC--CCCEEEEEEECCCCCCCCCCCCEEEEE
Q ss_conf 7689999926322201---125571128942148--841899999668788--654578999426775556898189999
Q 000301 258 SGKFTWKVHNFSLFKE---MIKTQKIMSPVFPAG--ECNLRISVYQSSVNG--QEYLSMCLESKDMEKTVVSDRSCWCLF 330 (1701)
Q Consensus 258 ~g~ftwkI~nFS~l~e---~~k~~~i~S~~F~vg--G~~WrI~vYPnG~~~--~~yLSiyL~l~~~e~~~~~~w~~~~~f 330 (1701)
+|+|+|+|.|||.++. ++.+..++|++|++| ||+|+|.+||||.+. ++|||+||++++++++..++|+++++|
T Consensus 39 ~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a~~ 118 (198)
T 4ghu_A 39 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKV 118 (198)
T ss_dssp SSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCE
T ss_pred CCEEEEEECCHHHHHHHHCCCCCCEEECCCEEECCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEE
T ss_conf 53899998997897754214899489899858789992899999969988889986999999437766777796399999
Q ss_pred EEEEEECCCCCCCEEEC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 99997189999852322-----423445788899877558233223212244888743588179998999985
Q 000301 331 RMSVLNQSPGSNHMHRD-----SYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFHVIK 398 (1701)
Q Consensus 331 tl~LLnQ~~g~~~~~k~-----~~~rF~~~~~~~~n~~~G~~~FI~~sdL~d~~~GYLvdDSliIev~V~Vi~ 398 (1701)
+|.|+||.++..+..+. ....|+++. ...+.+|||.+||++++|+ ++|||+||+++|+|+|.|+.
T Consensus 119 ~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~-~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~ 188 (198)
T 4ghu_A 119 TLMLMDQGSSRRHLGDAFKPDPNSSSFKKPT-GEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD 188 (198)
T ss_dssp EEEECCCSTTCCCEEEEECCCTTSGGGSCCS-SSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTT
T ss_pred EEEEECCCCCCCCEEEEEECCCCCCEECCCC-CCCCCCCCCHHEEEHHHHH--HCCCEECCEEEEEEEEEECC
T ss_conf 9999828998542378750686631004876-6676873705583899964--36870299899999999656
No 9
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=1.00 E-value=1 Score=200.49 Aligned_cols=141 Identities=18% Similarity=0.248 Sum_probs=116.8
Q ss_pred CCCCEEEEEECCCCCCCC---CCCCCCCCCCCCCCC--CCEEEEEEEECCCCC--CCCEEEEEEECCCCCCCCCCCCEEE
Q ss_conf 457689999926322201---125571128942148--841899999668788--6545789994267755568981899
Q 000301 256 VLSGKFTWKVHNFSLFKE---MIKTQKIMSPVFPAG--ECNLRISVYQSSVNG--QEYLSMCLESKDMEKTVVSDRSCWC 328 (1701)
Q Consensus 256 ~~~g~ftwkI~nFS~l~e---~~k~~~i~S~~F~vg--G~~WrI~vYPnG~~~--~~yLSiyL~l~~~e~~~~~~w~~~~ 328 (1701)
+..|+|+|+|.|||.++. .+.+..++|++|++| ||+|+|.+||+|.+. ++|+|+||++++++++..++|++++
T Consensus 21 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~a 100 (178)
T 4gjh_A 21 CYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQ 100 (178)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCCC
T ss_pred CCCEEEEEEECCHHHHHHHHHCCCCCEEECCCEEECCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCEEE
T ss_conf 11418999999889988663248982898998381899908999999799998889889999998158878666981589
Q ss_pred EEEEEEEECCCCCCCEEEC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 9999997189999852322-----42344578889987755823322321224488874358817999899998
Q 000301 329 LFRMSVLNQSPGSNHMHRD-----SYGRFAADNKSGDNTSLGWNDYMKMADFVGHDSGFLVDDTAVFSTSFHVI 397 (1701)
Q Consensus 329 ~ftl~LLnQ~~g~~~~~k~-----~~~rF~~~~~~~~n~~~G~~~FI~~sdL~d~~~GYLvdDSliIev~V~Vi 397 (1701)
+|+|+|+||..+..++.+. ..++|+++.. ..+.+|||.+||++++|+++++|||+||+++|+|+|.+.
T Consensus 101 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~-~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~ 173 (178)
T 4gjh_A 101 RVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDG-EMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLT 173 (178)
T ss_dssp EEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSS-SBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCT
T ss_pred EEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCC-CCCCCCCHHHEEEHHHHHCCCCCCCCCCEEEEEEEEEEC
T ss_conf 9999998079986324886305976431358764-456770733414999963434596919999999999956
No 10
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=1.00 E-value=1 Score=198.98 Aligned_cols=134 Identities=26% Similarity=0.466 Sum_probs=112.1
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHCCCCCCEECCCCEEECCC---EEEEEEEECCCCCC-CCCEEEEEEEECCCCCCCCC
Q ss_conf 789873999999463223133310236894210882897571---59999996699999-99389999970699999998
Q 000301 421 SDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNR---DCRLIVYPRGQSQP-PCHLSVFLEVMDSRNTSSDW 496 (1701)
Q Consensus 421 ~~~~~~~~twkI~NFS~lk~l~k~~k~~G~~i~S~~F~vGG~---~WrL~iYP~G~~~~-~~yLSIYL~l~d~~~~~~~W 496 (1701)
.+...++|+|+|+|||.+++ ..|.+++|++|.+||| +|+|++||+|+..+ .+|+|+||+|.+. ..|
T Consensus 6 ~~~~~~~~~w~I~~fs~~~~------~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w 75 (145)
T 3ivv_A 6 GKVVKFSYMWTINNFSFCRE------EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKS 75 (145)
T ss_dssp CCCCEEEEEEEESSGGGCCC------CTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSS
T ss_pred CCEEEEEEEEEECCCHHHHH------CCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCC----CCC
T ss_conf 76888999999947147853------69988987996779967833999998199988899869999997379----997
Q ss_pred EEEEEEEEEEEECCCCCEEE-EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE
Q ss_conf 19999999999588997018-9514322235776765445345212126989981099999999999980
Q 000301 497 SCFVSHRLSVVNQKMEEKSV-TKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILK 565 (1701)
Q Consensus 497 ~v~a~f~L~Linq~~~~~sv-~k~~~~~F~~~~~~wG~~~FI~~~~L~d~~sGYLvdDsL~IeveV~Vik 565 (1701)
+++|+|+|+|+||.++..+. .....++|. ...+|||.+||+|++|+++++|||+||+++|+|+|+|++
T Consensus 76 ~v~a~f~l~llnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~ 144 (145)
T 3ivv_A 76 EVRAKFKFSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 144 (145)
T ss_dssp EEEEEEEEEEECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC
T ss_pred CEEEEEEEEEEECCCCCEEEECCCCEEEEC-CCCCCCHHHEEEHHHHCCCCCCCEECCEEEEEEEEEEEE
T ss_conf 299999999993699822136156508822-999858789488646334447848699999999999980
Done!