BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000302
(1698 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 110/260 (42%), Gaps = 55/260 (21%)
Query: 158 FDSRMKIFQNIMEVLKDTNV--GMIGVYGVNGVGKTTLVKQIAMQVIED----------- 204
F +R K+ I + L N G + +YG+ G GK+ L A + + D
Sbjct: 126 FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVL----AAEAVRDHSLLEGCFSGG 181
Query: 205 ----------------KLFDKVVFVERAEKLRQRL-------KNVKRVLVILDNIWKLLN 241
KL + + +++ E QRL K+ RVL++ + LL
Sbjct: 182 VHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLI 241
Query: 242 LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFFLIEV-LSYEEAWCLFE 300
LD V P+ V K ++ +C +LLT+R++ V + M + +E L E+ +
Sbjct: 242 LDDVWDPW--VLKAFDN---QCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILS 296
Query: 301 KIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALK---NKRLY----VWNDSLERLR 353
V + K D A I++ C G P+ + I L+ N+ Y + N +R+R
Sbjct: 297 LFV--NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIR 354
Query: 354 NSTSRQIHGMEENVYSSIEL 373
S+S ++E + S+E+
Sbjct: 355 KSSSYDYEALDEAMSISVEM 374
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 109/260 (41%), Gaps = 55/260 (21%)
Query: 158 FDSRMKIFQNIMEVLKDTN--VGMIGVYGVNGVGKTTLVKQIAMQVIED----------- 204
F +R K+ I + L N G + +YG+ G GK+ L A + + D
Sbjct: 133 FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVL----AAEAVRDHSLLEGCFSGG 188
Query: 205 ----------------KLFDKVVFVERAEKLRQRL-------KNVKRVLVILDNIWKLLN 241
KL + + +++ E QRL K+ RVL++ + LL
Sbjct: 189 VHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLI 248
Query: 242 LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFFLIEV-LSYEEAWCLFE 300
LD V P+ V K ++ +C +LLT+ ++ V + M + +E L E+ +
Sbjct: 249 LDDVWDPW--VLKAFDN---QCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILS 303
Query: 301 KIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALK---NKRLY----VWNDSLERLR 353
V + K D A I++ C G P+ + I L+ N+ Y + N +R+R
Sbjct: 304 LFV--NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIR 361
Query: 354 NSTSRQIHGMEENVYSSIEL 373
S+S ++E + S+E+
Sbjct: 362 KSSSYDYEALDEAMSISVEM 381
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 24/159 (15%)
Query: 223 LKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQ 282
L+ R L+ILD++W L A S+C +LLT+R++ V + M +
Sbjct: 232 LRKHPRSLLILDDVWDSWVLKAFD--------------SQCQILLTTRDKSVTDSVMGPK 277
Query: 283 KFFLIEV-LSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALK--- 338
+E L E+ + V + K +D A I++ C G P+ + I L+
Sbjct: 278 YVVPVESSLGKEKGLEILSLFV--NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP 335
Query: 339 NKRLY----VWNDSLERLRNSTSRQIHGMEENVYSSIEL 373
N+ Y + N +R+R S+S ++E + S+E+
Sbjct: 336 NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 374
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 24/159 (15%)
Query: 223 LKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQ 282
L+ R L+ILD++W L A S+C +LLT+R++ V + M +
Sbjct: 238 LRKHPRSLLILDDVWDSWVLKAFD--------------SQCQILLTTRDKSVTDSVMGPK 283
Query: 283 KFFLIEV-LSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALK--- 338
+E L E+ + V + K +D A I++ C G P+ + I L+
Sbjct: 284 YVVPVESSLGKEKGLEILSLFV--NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP 341
Query: 339 NKRLY----VWNDSLERLRNSTSRQIHGMEENVYSSIEL 373
N+ Y + N +R+R S+S ++E + S+E+
Sbjct: 342 NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 380
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 25/135 (18%)
Query: 799 LHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRT 858
LHE++ ++IIKV LRHL +++N +R +I F+ L + L++ R
Sbjct: 71 LHENQ----IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN--GLANLNTLELFDNRL 124
Query: 859 TLGFNG----------ITTKDDPDEKVI------FPSLEELDLYSLITIEKLWPKQFQGM 902
T NG + +++P E + PSL LDL L + + F+G+
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184
Query: 903 SSCQNLTKVTVAFCD 917
S NL + +A C+
Sbjct: 185 S---NLRYLNLAMCN 196
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 37.7 bits (86), Expect = 0.055, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 139 SFRPTVERTT-PV--SYTAYEQFDSRMKIFQNIMEVLK----DTNVGMIGVYGVNGVGKT 191
+ RP RTT P+ S A+ Q D+++ IF+ ++V+ G IG++G GVGKT
Sbjct: 120 NLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKT 179
Query: 192 TLVKQI 197
L+ ++
Sbjct: 180 VLIMEL 185
>pdb|3QZ9|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida
Length = 219
Score = 36.2 bits (82), Expect = 0.15, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 129 LLGTGNFGTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIM---EVLKDTNVGMIGVYGV 185
LL GNF FR ++ER P Y ++ + +F+N++ VL T V G
Sbjct: 40 LLANGNFNLDEFRHSIERMGPAHYLEGTYYEHWLHVFENLLVEKGVLTATEVAT----GK 95
Query: 186 NGVGKTTLVKQIAMQVIEDKLFDKVVFVERAEKLRQRLKNVKRVLVILDN 235
GKT + I D L R E R R +V V+ N
Sbjct: 96 AASGKTA--TPVLTPAIVDGLLSTGASAAREEGARARFAVGDKVRVLNKN 143
>pdb|3QXE|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QZ5|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida.
pdb|3QZ5|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida.
pdb|3QZ5|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida.
pdb|3QZ5|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida
Length = 219
Score = 36.2 bits (82), Expect = 0.15, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 129 LLGTGNFGTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIM---EVLKDTNVGMIGVYGV 185
LL GNF FR ++ER P Y ++ + +F+N++ VL T V G
Sbjct: 40 LLANGNFNLDEFRHSIERMGPAHYLEGTYYEHWLHVFENLLVEKGVLTATEVAT----GK 95
Query: 186 NGVGKTTLVKQIAMQVIEDKLFDKVVFVERAEKLRQRLKNVKRVLVILDN 235
GKT + I D L R E R R +V V+ N
Sbjct: 96 AASGKTA--TPVLTPAIVDGLLSTGASAAREEGARARFAVGDKVRVLNKN 143
>pdb|3QYH|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QYH|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QYH|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida.
pdb|3QYH|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Beta-H71l
From Pseudomonas Putida
Length = 219
Score = 35.8 bits (81), Expect = 0.23, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 129 LLGTGNFGTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIM---EVLKDTNVGMIGVYGV 185
LL GNF FR ++ER P Y ++ + +F+N++ VL T V G
Sbjct: 40 LLANGNFNLDEFRHSIERMGPAHYLEGTYYELWLHVFENLLVEKGVLTATEVAT----GK 95
Query: 186 NGVGKTTLVKQIAMQVIEDKLFDKVVFVERAEKLRQRLKNVKRVLVILDN 235
GKT + I D L R E R R +V V+ N
Sbjct: 96 AASGKTA--TPVLTPAIVDGLLSTGASAAREEGARARFAVGDKVRVLNKN 143
>pdb|3QYG|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida
Length = 219
Score = 35.0 bits (79), Expect = 0.36, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 129 LLGTGNFGTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIM---EVLKDTNVGMIGVYGV 185
LL GNF FR +++R P Y ++ + +F+N++ VL T V G
Sbjct: 40 LLANGNFNLDEFRHSIQRMGPAHYLEGTYYEHWLHVFENLLVEKGVLTATEVAT----GK 95
Query: 186 NGVGKTTLVKQIAMQVIEDKLFDKVVFVERAEKLRQRLKNVKRVLVILDN 235
GKT + I D L R E R R +V V+ N
Sbjct: 96 AASGKTA--TPVLTPAIVDGLLSTGASAAREEGARARFAVGDKVRVLNKN 143
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 169 MEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVI-----EDKLFDKVVFVERAEKLR--- 220
+ ++KD V +G+ G NG GKTT VK +A Q+I ++ +D V+ R +L+
Sbjct: 111 LPIVKDGMV--VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYF 168
Query: 221 QRLKN 225
+RLKN
Sbjct: 169 ERLKN 173
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 135 FGTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLV 194
F +S R VER T V Y + K+ E+ K +IG+ G NG+GKTT V
Sbjct: 343 FTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGE---VIGIVGPNGIGKTTFV 399
Query: 195 KQIA 198
K +A
Sbjct: 400 KMLA 403
>pdb|3TK1|A Chain A, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
pdb|3TK1|B Chain B, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
Length = 330
Score = 34.7 bits (78), Expect = 0.52, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 159 DSRMKIFQNIMEVLKDTNVGM-IGVYGVNGVGKTTLVKQIAMQVIE 203
D R + + ++E++ D M +G+ GV GVGK+T ++ + M +IE
Sbjct: 37 DHRERAQELLLELMPDAGRAMHVGITGVPGVGKSTSIEALGMHLIE 82
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 169 MEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVI-----EDKLFDKVVFVERAEKLR--- 220
+ ++KD V +G+ G NG GKTT VK +A Q+I ++ +D V+ R +L+
Sbjct: 97 LPIVKDGMV--VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYF 154
Query: 221 QRLKN 225
+RLKN
Sbjct: 155 ERLKN 159
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 135 FGTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLV 194
F +S R VER T V Y + K+ E+ K +IG+ G NG+GKTT V
Sbjct: 329 FTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGE---VIGIVGPNGIGKTTFV 385
Query: 195 KQIA 198
K +A
Sbjct: 386 KMLA 389
>pdb|2DXU|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation R48a
pdb|2DXU|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation R48a
pdb|2DZC|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R48a
pdb|2DZC|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R48a
pdb|2EJG|A Chain A, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|B Chain B, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 235
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 632 DSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQDLISMKLE---------IF 682
D ++K+ G LVE KG + + +++ + +P SMKLE +F
Sbjct: 104 DVLVNYKKIAG----VLVEGKGDKIVLGIGLNVNNK--VPNGATSMKLELGSEVPLLSVF 157
Query: 683 RMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHEL 742
R I N+ Y F ++ + L+ + N++LG +K+ + + D+ F ++ L
Sbjct: 158 RSLITNLDRLYLNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLIIRL 217
Query: 743 DDGEV 747
D GEV
Sbjct: 218 DSGEV 222
>pdb|2DVE|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, Mutation
Arg51ala
pdb|2DVE|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, Mutation
Arg51ala
pdb|2E10|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R51a
pdb|2E10|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R51a
Length = 235
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 632 DSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQDLISMKLE---------IF 682
D ++K+ G LVE KG + + +++ + +P SMKLE +F
Sbjct: 104 DVLVNYKKIAG----VLVEGKGDKIVLGIGLNVNNK--VPNGATSMKLELGSEVPLLSVF 157
Query: 683 RMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHEL 742
R I N+ Y F ++ + L+ + N++LG +K+ + + D+ F ++ L
Sbjct: 158 RSLITNLDRLYLNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLIIRL 217
Query: 743 DDGEV 747
D GEV
Sbjct: 218 DSGEV 222
>pdb|1WNL|A Chain A, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Adp
pdb|1WNL|B Chain B, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Adp
pdb|1WQ7|A Chain A, Crystal Structure Of Biotin-(acetyl-coa-carboxylase)
Ligase From Pyrococcus Horikoshii Ot3
pdb|1WQ7|B Chain B, Crystal Structure Of Biotin-(acetyl-coa-carboxylase)
Ligase From Pyrococcus Horikoshii Ot3
pdb|1WQW|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5-Amp
pdb|1WQW|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5-Amp
pdb|1X01|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Atp
pdb|1X01|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Atp
pdb|2DKG|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp,
Pyrophosphate And Mg(2+)
pdb|2DKG|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp,
Pyrophosphate And Mg(2+)
pdb|2DTH|A Chain A, The Crystal Structure Of The Orthorhombic Form Of Biotin
Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex
With Biotin And Adp
pdb|2DTH|B Chain B, The Crystal Structure Of The Orthorhombic Form Of Biotin
Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex
With Biotin And Adp
pdb|2DTI|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp,
Pyrophosphate And Mn(2+)
pdb|2DTI|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp,
Pyrophosphate And Mn(2+)
Length = 235
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 632 DSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQDLISMKLE---------IF 682
D ++K+ G LVE KG + + +++ + +P SMKLE +F
Sbjct: 104 DVLVNYKKIAG----VLVEGKGDKIVLGIGLNVNNK--VPNGATSMKLELGSEVPLLSVF 157
Query: 683 RMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHEL 742
R I N+ Y F ++ + L+ + N++LG +K+ + + D+ F ++ L
Sbjct: 158 RSLITNLDRLYLNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLIIRL 217
Query: 743 DDGEV 747
D GEV
Sbjct: 218 DSGEV 222
>pdb|2DEQ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, K111g
Mutation
pdb|2DEQ|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, K111g
Mutation
pdb|2E1H|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111g Mutation
pdb|2E1H|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111g Mutation
Length = 235
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 643 GSNASLVELKGLSKLTTLEIHIRDARIMPQDLISMKLE---------IFRMFIGNVVDWY 693
G LVE KG + + +++ + +P SMKLE +FR I N+ Y
Sbjct: 111 GIAGVLVEGKGDKIVLGIGLNVNNK--VPNGATSMKLELGSEVPLLSVFRSLITNLDRLY 168
Query: 694 HKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEV 747
F ++ + L+ + N++LG +K+ + + D+ F ++ LD GEV
Sbjct: 169 LNFLKNPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLIIRLDSGEV 222
>pdb|3NXS|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM FROM
MYCOBACTERIUM Smegmatis Bound To Gdp
Length = 329
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 159 DSRMKIFQNIMEVLKDTNVGM-IGVYGVNGVGKTTLVKQIAMQVIE 203
D R + Q +++++ + M +G+ GV GVGK+T ++ + M +IE
Sbjct: 38 DHREQAQQLLLDLMPEAGSAMHVGITGVPGVGKSTTIEALGMHLIE 83
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 25/150 (16%)
Query: 806 SNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTL----G 861
+++++I+ LRHL ++KNL+R ++ F+ L + L++ R T
Sbjct: 45 NSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFN--GLPSLNTLELFDNRLTTVPTQA 102
Query: 862 FNGITT------KDDPDEKVI------FPSLEELDLYSLITIEKLWPKQFQGMSSCQNLT 909
F ++ +++P E + PSL LDL L +E + F+G+ NL
Sbjct: 103 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV---NLR 159
Query: 910 KVTVAFCDRLKYLFSYSMVNSLVQLQHLEI 939
+ + C+ L + +LV+L+ LE+
Sbjct: 160 YLNLGMCN----LKDIPNLTALVRLEELEL 185
>pdb|2E41|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With The Reaction Product Analog
Biotinol-5'-Amp, Mutations R48a And K111a
pdb|2E41|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With The Reaction Product Analog
Biotinol-5'-Amp, Mutations R48a And K111a
pdb|2E64|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutations R48a And K111a
pdb|2E64|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutations R48a And K111a
pdb|2ZGW|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Adenosine And Biotin,
Mutations R48a And K111a
pdb|2ZGW|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Adenosine And Biotin,
Mutations R48a And K111a
pdb|2EJF|A Chain A, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|B Chain B, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
Length = 235
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 648 LVELKGLSKLTTLEIHIRDARIMPQDLISMKLE---------IFRMFIGNVVDWYHKFER 698
LVE KG + + +++ + +P SMKLE +FR I N+ Y F +
Sbjct: 116 LVEGKGDKIVLGIGLNVNNK--VPNGATSMKLELGSEVPLLSVFRSLITNLDRLYLNFLK 173
Query: 699 SRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEV 747
+ + L+ + N++LG +K+ + + D+ F ++ LD GEV
Sbjct: 174 NPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLIIRLDSGEV 222
>pdb|2DJZ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp, K111a
Mutation
pdb|2DJZ|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp, K111a
Mutation
pdb|2HNI|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111a Mutation
pdb|2HNI|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111a Mutation
Length = 235
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 648 LVELKGLSKLTTLEIHIRDARIMPQDLISMKLE---------IFRMFIGNVVDWYHKFER 698
LVE KG + + +++ + +P SMKLE +FR I N+ Y F +
Sbjct: 116 LVEGKGDKIVLGIGLNVNNK--VPNGATSMKLELGSEVPLLSVFRSLITNLDRLYLNFLK 173
Query: 699 SRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEV 747
+ + L+ + N++LG +K+ + + D+ F ++ LD GEV
Sbjct: 174 NPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLIIRLDSGEV 222
>pdb|2DXT|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Atp And Biotin, Mutation D104a
pdb|2DXT|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Atp And Biotin, Mutation D104a
pdb|2DZ9|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation
D104a
pdb|2DZ9|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation
D104a
pdb|2E65|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, Mutation D104a
pdb|2E65|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, Mutation D104a
Length = 235
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 648 LVELKGLSKLTTLEIHIRDARIMPQDLISMKLE---------IFRMFIGNVVDWYHKFER 698
LVE KG + + +++ + +P SMKLE +FR I N+ Y F +
Sbjct: 116 LVEGKGDKIVLGIGLNVNNK--VPNGATSMKLELGSEVPLLSVFRSLITNLDRLYLNFLK 173
Query: 699 SRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEV 747
+ + L+ + N++LG +K+ + + D+ F ++ LD GEV
Sbjct: 174 NPMDILNLVRDNMILGVRVKILGDGSFEGIAEDIDDFGRLIIRLDSGEV 222
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 25/150 (16%)
Query: 806 SNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTL----G 861
+++++I+ LRHL ++KNL+R ++ F+ L + L++ R T
Sbjct: 45 NSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFN--GLPSLNTLELFDNRLTTVPTQA 102
Query: 862 FNGITT------KDDPDEKVI------FPSLEELDLYSLITIEKLWPKQFQGMSSCQNLT 909
F ++ +++P E + PSL LDL L +E + F+G+ NL
Sbjct: 103 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV---NLR 159
Query: 910 KVTVAFCDRLKYLFSYSMVNSLVQLQHLEI 939
+ + C+ L + +LV+L+ LE+
Sbjct: 160 YLNLGMCN----LKDIPNLTALVRLEELEL 185
>pdb|3CWB|E Chain E, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|R Chain R, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|R Chain R, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|R Chain R, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|R Chain R, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|E Chain E, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|R Chain R, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|E Chain E, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|R Chain R, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|E Chain E, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|R Chain R, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|E Chain E, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|R Chain R, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|E Chain E, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|R Chain R, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|E Chain E, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|R Chain R, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|E Chain E, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|R Chain R, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|E Chain E, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|R Chain R, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|E Chain E, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|R Chain R, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 196
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 417 VRTSEAARNRVYTLVDNLKASSLLLDGDKDEVKLHDIIYAVAVSIA-RDEFMF-NIQSKD 474
V T+ AA+N V + +L AS+ +L K E+KL DI V+ R + +F +++
Sbjct: 45 VATAYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQA 104
Query: 475 ELKDKTQKDSIAISLPNRDIDEL--PE 499
E+ + + D + P D+D + PE
Sbjct: 105 EINQEAEVDVSKLRDPQHDLDRVKKPE 131
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 32.0 bits (71), Expect = 3.4, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 1139 WEGNLNSTIQKLFVVGFHDIKDLKLSQFPH--LKEIWHGQAL 1178
WE + T++K +V +KD++ S FPH L ++H Q +
Sbjct: 230 WEKKIGKTLEKTYVSEEQVLKDIQESSFPHNYLLALYHSQQI 271
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 19/131 (14%)
Query: 129 LLGTGNFGTVSFRPTVERTTPV------SYTAYEQFDS------RMKIFQNIMEVLKDTN 176
LLG+ G+ + TP TA + DS R K Q ++EVL
Sbjct: 141 LLGSNETGSSAAGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRT 200
Query: 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDK-VVFVERAEKLRQRLKNVKRVLV 231
+ G GVGKT + + +A Q+I ++ L DK V+ ++ K R ++ R+
Sbjct: 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFED--RLKK 258
Query: 232 ILDNIWKLLNL 242
++D I + N+
Sbjct: 259 VMDEIRQAGNI 269
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202
N ++GV G NGVGKTT++K +A ++I
Sbjct: 24 NNTILGVLGKNGVGKTTVLKILAGEII 50
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 31.2 bits (69), Expect = 5.0, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 135 FGTVSFRPTVERTTPVSYTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLV 194
F R +ER T V+Y + ++ E+ K +IG+ G NG+GKTT V
Sbjct: 273 FTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGE---VIGIVGPNGIGKTTFV 329
Query: 195 KQIA 198
K +A
Sbjct: 330 KXLA 333
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Query: 179 MIGVYGVNGVGKTTLVKQIAMQVI-----EDKLFDKVVFVERAEKLR---QRLKN 225
++G+ G NG GK+T VK +A Q+I ++ +D V+ R +L+ ++LKN
Sbjct: 49 VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
>pdb|3MD0|A Chain A, Crystal Structure Of ArginineORNITHINE TRANSPORT SYSTEM
ATPASE FROM Mycobacterium Tuberculosis Bound To Gdp (A
Ras-Like Gtpase Superfamily Protein)
pdb|3P32|A Chain A, Hydrolysis Of Gtp To Gdp By An Mcm-Associated And Meab-
And Mmaa-Like G-Protein From Mycobacterium Tuberculosis
pdb|4GT1|A Chain A, Crystal Structure Of A Meab- And Mmaa-Like Gtpase From
Mycobacterium Tuberculosis Bound To 2'-Deoxyguanosine
Diphosphate
Length = 355
Score = 30.8 bits (68), Expect = 7.3, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203
N +G+ GV GVGK+T ++ + M +IE
Sbjct: 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105
>pdb|3LW2|A Chain A, Mouse Plasminogen Activator Inhibitor-1 (Pai-1)
Length = 379
Score = 30.4 bits (67), Expect = 8.6, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 151 SYTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGV 188
S+TA++ D +K+FQ +++ KD NV + YGV+ V
Sbjct: 6 SHTAHQATDFGVKVFQQVVQASKDRNV-VFSPYGVSSV 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,645,607
Number of Sequences: 62578
Number of extensions: 1833712
Number of successful extensions: 4589
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 4545
Number of HSP's gapped (non-prelim): 60
length of query: 1698
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1586
effective length of database: 7,964,601
effective search space: 12631857186
effective search space used: 12631857186
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)