Query 000302
Match_columns 1698
No_of_seqs 773 out of 6529
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.9E-78 4.2E-83 774.1 47.4 602 12-665 9-678 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.7E-59 1E-63 635.6 51.5 635 154-949 182-886 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.4E-37 7.4E-42 362.2 17.9 246 161-416 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 2.7E-29 6E-34 346.4 28.3 363 483-943 70-439 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.2E-28 2.5E-33 340.2 27.8 517 504-1174 69-589 (968)
6 PLN03210 Resistant to P. syrin 99.8 3.1E-19 6.7E-24 245.1 27.7 344 502-949 556-910 (1153)
7 KOG4194 Membrane glycoprotein 99.8 9.6E-20 2.1E-24 207.2 10.1 365 484-943 54-427 (873)
8 KOG0618 Serine/threonine phosp 99.8 3.1E-20 6.8E-25 223.4 -2.2 464 490-1048 6-488 (1081)
9 KOG0444 Cytoskeletal regulator 99.8 1.9E-20 4.2E-25 213.2 -3.9 168 485-665 35-207 (1255)
10 KOG0444 Cytoskeletal regulator 99.8 3.6E-20 7.8E-25 211.0 -2.4 362 484-947 9-377 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 4.7E-21 1E-25 208.7 -11.4 180 478-671 41-222 (565)
12 KOG4194 Membrane glycoprotein 99.7 4.9E-19 1.1E-23 201.5 3.9 362 483-941 79-448 (873)
13 KOG0618 Serine/threonine phosp 99.7 1.3E-18 2.9E-23 209.5 0.8 467 520-1127 12-485 (1081)
14 KOG0472 Leucine-rich repeat pr 99.6 1E-18 2.2E-23 190.7 -9.5 170 490-674 145-316 (565)
15 KOG0617 Ras suppressor protein 99.6 1.1E-16 2.4E-21 154.5 -4.3 168 493-674 22-192 (264)
16 KOG0617 Ras suppressor protein 99.3 6.3E-14 1.4E-18 135.7 -2.7 160 482-655 33-196 (264)
17 KOG4341 F-box protein containi 99.3 1.9E-14 4.2E-19 159.6 -9.6 176 1417-1625 268-443 (483)
18 KOG4658 Apoptotic ATPase [Sign 99.3 3.7E-12 8E-17 165.4 9.2 128 527-665 520-652 (889)
19 PRK15387 E3 ubiquitin-protein 99.2 7E-11 1.5E-15 149.9 13.8 116 530-669 201-316 (788)
20 PRK15387 E3 ubiquitin-protein 99.2 1.8E-10 3.9E-15 146.3 15.4 254 485-844 204-457 (788)
21 PRK15370 E3 ubiquitin-protein 99.2 7.2E-11 1.6E-15 151.2 11.7 135 485-635 181-316 (754)
22 PRK15370 E3 ubiquitin-protein 99.1 1.3E-10 2.8E-15 149.0 9.9 95 530-634 199-294 (754)
23 KOG4341 F-box protein containi 99.1 1.5E-12 3.3E-17 144.8 -6.7 43 1183-1225 163-205 (483)
24 KOG4237 Extracellular matrix p 99.0 7.1E-11 1.5E-15 130.4 -1.7 61 875-941 295-355 (498)
25 KOG4237 Extracellular matrix p 98.9 7.2E-11 1.6E-15 130.3 -2.7 138 493-634 57-199 (498)
26 PRK04841 transcriptional regul 98.9 4.6E-08 1E-12 135.2 22.3 262 155-463 13-333 (903)
27 PF01637 Arch_ATPase: Archaeal 98.8 1.1E-08 2.4E-13 116.6 11.0 172 158-332 1-233 (234)
28 TIGR00635 ruvB Holliday juncti 98.8 1.5E-07 3.3E-12 111.4 18.2 178 155-336 3-204 (305)
29 PRK00080 ruvB Holliday junctio 98.8 1E-07 2.2E-12 113.4 16.4 183 153-336 22-225 (328)
30 PF14580 LRR_9: Leucine-rich r 98.8 4.4E-09 9.5E-14 109.5 3.9 127 528-661 17-146 (175)
31 PF14580 LRR_9: Leucine-rich r 98.8 5.8E-09 1.3E-13 108.6 4.7 131 494-629 9-146 (175)
32 PRK00411 cdc6 cell division co 98.7 1.7E-06 3.7E-11 106.7 25.3 261 156-441 30-356 (394)
33 KOG0532 Leucine-rich repeat (L 98.7 1.8E-09 3.8E-14 125.0 -1.2 185 485-685 78-265 (722)
34 cd00116 LRR_RI Leucine-rich re 98.7 6.1E-09 1.3E-13 125.0 1.3 137 524-666 17-176 (319)
35 TIGR03015 pepcterm_ATPase puta 98.7 5.3E-07 1.2E-11 104.8 17.3 158 174-337 40-242 (269)
36 KOG1259 Nischarin, modulator o 98.6 3.8E-09 8.2E-14 112.1 -0.8 134 529-672 283-416 (490)
37 PF05729 NACHT: NACHT domain 98.6 1.6E-07 3.5E-12 100.3 11.2 121 178-303 1-163 (166)
38 KOG0532 Leucine-rich repeat (L 98.6 2.5E-09 5.5E-14 123.7 -3.2 163 507-685 78-242 (722)
39 PRK06893 DNA replication initi 98.6 4.5E-07 9.8E-12 101.3 13.9 150 176-337 38-207 (229)
40 PRK13342 recombination factor 98.6 4.7E-07 1E-11 111.0 13.7 171 154-336 10-199 (413)
41 COG2909 MalT ATP-dependent tra 98.5 3.2E-06 6.8E-11 104.3 18.2 259 157-464 20-340 (894)
42 COG2256 MGS1 ATPase related to 98.5 1.3E-06 2.8E-11 98.7 13.1 167 153-331 21-210 (436)
43 cd00116 LRR_RI Leucine-rich re 98.4 1.3E-07 2.9E-12 113.4 4.1 136 525-666 76-232 (319)
44 TIGR02928 orc1/cdc6 family rep 98.4 5.8E-05 1.3E-09 92.1 25.9 271 156-442 15-349 (365)
45 KOG1259 Nischarin, modulator o 98.4 7.9E-08 1.7E-12 102.3 0.1 127 503-635 283-411 (490)
46 PRK07003 DNA polymerase III su 98.4 1.4E-05 3.1E-10 99.2 19.4 174 153-334 13-222 (830)
47 TIGR03420 DnaA_homol_Hda DnaA 98.3 6.6E-06 1.4E-10 92.8 14.4 169 156-335 15-203 (226)
48 PRK04195 replication factor C 98.3 3.8E-05 8.2E-10 96.2 22.0 243 152-423 10-278 (482)
49 PRK12323 DNA polymerase III su 98.3 2.1E-05 4.5E-10 96.5 18.2 173 153-333 13-225 (700)
50 PF13173 AAA_14: AAA domain 98.2 2.3E-06 5E-11 86.2 7.8 108 177-295 2-127 (128)
51 PF05496 RuvB_N: Holliday junc 98.2 1.5E-05 3.3E-10 84.6 13.3 178 152-333 20-221 (233)
52 PRK14961 DNA polymerase III su 98.2 3E-05 6.4E-10 93.3 16.9 173 153-333 13-220 (363)
53 COG4886 Leucine-rich repeat (L 98.2 1.4E-06 3E-11 107.6 5.7 142 531-683 141-283 (394)
54 PRK14960 DNA polymerase III su 98.2 6.2E-05 1.3E-09 92.8 19.3 172 153-333 12-219 (702)
55 COG4886 Leucine-rich repeat (L 98.2 1.6E-06 3.4E-11 107.2 5.8 174 483-671 117-293 (394)
56 PRK14949 DNA polymerase III su 98.2 1.8E-05 3.9E-10 100.4 15.0 174 153-334 13-221 (944)
57 PRK09087 hypothetical protein; 98.2 1.5E-05 3.3E-10 88.3 12.9 142 177-336 44-198 (226)
58 PRK14963 DNA polymerase III su 98.2 2.1E-05 4.5E-10 97.4 15.3 171 153-331 11-215 (504)
59 PRK08084 DNA replication initi 98.1 3.8E-05 8.3E-10 86.2 15.6 168 156-335 22-211 (235)
60 PLN03025 replication factor C 98.1 1.8E-05 4E-10 93.6 13.6 170 153-331 10-198 (319)
61 COG3899 Predicted ATPase [Gene 98.1 5.5E-05 1.2E-09 99.9 18.7 237 158-408 2-333 (849)
62 COG3903 Predicted ATPase [Gene 98.1 2.7E-06 5.9E-11 97.2 5.5 260 177-464 14-316 (414)
63 PRK05564 DNA polymerase III su 98.1 4.9E-05 1.1E-09 89.9 16.3 165 156-332 4-189 (313)
64 PRK14962 DNA polymerase III su 98.1 4.8E-05 1E-09 93.4 16.6 177 153-337 11-223 (472)
65 PRK14956 DNA polymerase III su 98.1 2.8E-05 6.1E-10 93.3 13.8 169 153-330 15-219 (484)
66 PRK12402 replication factor C 98.1 4.2E-05 9.1E-10 92.4 15.4 174 153-335 12-228 (337)
67 PRK07471 DNA polymerase III su 98.1 5.5E-05 1.2E-09 89.8 15.7 170 152-333 15-238 (365)
68 PRK07940 DNA polymerase III su 98.1 6.7E-05 1.5E-09 89.8 16.4 166 155-333 4-213 (394)
69 PRK08727 hypothetical protein; 98.1 4.4E-05 9.5E-10 85.6 13.8 167 155-330 18-201 (233)
70 PRK13341 recombination factor 98.1 3.3E-05 7.2E-10 99.2 14.4 165 153-329 25-213 (725)
71 KOG3207 Beta-tubulin folding c 98.1 1.1E-06 2.5E-11 99.4 1.0 184 484-670 123-316 (505)
72 TIGR02903 spore_lon_C ATP-depe 98.1 0.00065 1.4E-08 86.9 25.9 49 154-202 152-200 (615)
73 KOG1859 Leucine-rich repeat pr 98.1 5.4E-08 1.2E-12 115.6 -9.9 180 479-671 106-295 (1096)
74 PRK09112 DNA polymerase III su 98.0 8E-05 1.7E-09 88.0 16.3 174 151-334 18-241 (351)
75 PRK06645 DNA polymerase III su 98.0 5.4E-05 1.2E-09 93.2 15.1 170 153-331 18-227 (507)
76 PRK14951 DNA polymerase III su 98.0 6.2E-05 1.4E-09 94.4 15.5 172 153-333 13-225 (618)
77 PTZ00112 origin recognition co 98.0 0.00032 6.9E-09 87.7 20.9 176 156-338 755-987 (1164)
78 PRK14955 DNA polymerase III su 98.0 5.1E-05 1.1E-09 92.4 14.3 173 153-333 13-228 (397)
79 PRK14964 DNA polymerase III su 98.0 7.2E-05 1.6E-09 91.2 15.3 172 153-332 10-216 (491)
80 PRK14957 DNA polymerase III su 98.0 8E-05 1.7E-09 92.2 15.8 176 153-336 13-224 (546)
81 TIGR01242 26Sp45 26S proteasom 98.0 7.6E-05 1.6E-09 90.3 15.0 169 154-328 120-329 (364)
82 PRK15386 type III secretion pr 98.0 1.4E-05 3.1E-10 93.3 8.2 36 1345-1386 51-86 (426)
83 KOG0989 Replication factor C, 98.0 0.00028 6E-09 77.3 17.1 168 152-327 32-224 (346)
84 PLN03150 hypothetical protein; 98.0 1.2E-05 2.5E-10 103.8 7.6 103 531-634 419-526 (623)
85 PF13855 LRR_8: Leucine rich r 97.9 5.8E-06 1.2E-10 70.7 3.1 57 576-633 2-59 (61)
86 TIGR00678 holB DNA polymerase 97.9 0.00012 2.5E-09 79.7 14.0 149 167-329 3-187 (188)
87 PRK07994 DNA polymerase III su 97.9 9.5E-05 2.1E-09 92.9 14.9 174 153-334 13-221 (647)
88 TIGR02397 dnaX_nterm DNA polym 97.9 0.00017 3.7E-09 87.7 16.8 174 153-334 11-219 (355)
89 PRK14959 DNA polymerase III su 97.9 0.00038 8.2E-09 86.8 19.6 176 153-337 13-225 (624)
90 PRK05896 DNA polymerase III su 97.9 0.0001 2.3E-09 91.0 14.5 174 153-335 13-223 (605)
91 PF13855 LRR_8: Leucine rich r 97.9 9.7E-06 2.1E-10 69.3 4.0 56 531-586 2-60 (61)
92 PRK08691 DNA polymerase III su 97.9 7.4E-05 1.6E-09 93.2 13.1 171 153-332 13-219 (709)
93 PRK08903 DnaA regulatory inact 97.9 0.00016 3.4E-09 81.5 14.5 172 156-337 18-203 (227)
94 PRK00440 rfc replication facto 97.9 0.00016 3.4E-09 86.6 15.4 174 153-334 14-204 (319)
95 KOG2120 SCF ubiquitin ligase, 97.9 7.7E-07 1.7E-11 95.3 -4.1 123 1152-1285 206-328 (419)
96 KOG3207 Beta-tubulin folding c 97.9 4E-06 8.6E-11 95.1 0.9 181 502-693 119-317 (505)
97 cd00009 AAA The AAA+ (ATPases 97.9 6E-05 1.3E-09 78.7 9.7 109 159-273 1-131 (151)
98 KOG1947 Leucine rich repeat pr 97.8 1.4E-06 3.1E-11 111.4 -3.3 38 1522-1559 403-440 (482)
99 PRK05642 DNA replication initi 97.8 0.00025 5.4E-09 79.5 14.9 149 178-337 46-212 (234)
100 PRK15386 type III secretion pr 97.8 3.1E-05 6.8E-10 90.6 7.7 59 1184-1259 52-110 (426)
101 PRK14954 DNA polymerase III su 97.8 0.00028 6.2E-09 89.0 16.7 169 153-329 13-224 (620)
102 KOG2120 SCF ubiquitin ligase, 97.8 8.5E-07 1.8E-11 95.0 -5.0 189 1346-1620 185-375 (419)
103 PLN03150 hypothetical protein; 97.8 3.3E-05 7.1E-10 99.7 8.1 109 505-615 419-532 (623)
104 PRK07133 DNA polymerase III su 97.8 0.00037 7.9E-09 88.2 16.4 172 153-333 15-219 (725)
105 PRK07764 DNA polymerase III su 97.8 0.0003 6.5E-09 91.7 16.1 170 153-331 12-219 (824)
106 PRK14970 DNA polymerase III su 97.8 0.00037 8.1E-09 84.7 16.1 171 153-331 14-207 (367)
107 PRK09111 DNA polymerase III su 97.7 0.00039 8.5E-09 87.7 15.7 174 152-334 20-234 (598)
108 PRK06305 DNA polymerase III su 97.7 0.00047 1E-08 84.8 16.1 170 153-330 14-219 (451)
109 KOG1947 Leucine rich repeat pr 97.7 1.4E-06 3E-11 111.6 -6.3 46 1579-1626 400-445 (482)
110 PF00308 Bac_DnaA: Bacterial d 97.7 0.00033 7.1E-09 77.6 13.1 149 177-334 34-209 (219)
111 PRK08451 DNA polymerase III su 97.7 0.00042 9.1E-09 85.4 15.1 173 153-334 11-219 (535)
112 PRK14952 DNA polymerase III su 97.7 0.00046 1E-08 86.5 15.6 176 153-337 10-224 (584)
113 PRK14971 DNA polymerase III su 97.7 0.00062 1.3E-08 86.7 16.8 172 154-333 15-222 (614)
114 PRK14958 DNA polymerase III su 97.7 0.00028 6E-09 87.8 13.3 172 153-332 13-219 (509)
115 PRK03992 proteasome-activating 97.7 0.00042 9.2E-09 84.0 14.1 167 155-327 130-337 (389)
116 PRK14969 DNA polymerase III su 97.7 0.00038 8.3E-09 87.3 14.0 171 153-331 13-218 (527)
117 TIGR02881 spore_V_K stage V sp 97.7 0.00039 8.4E-09 79.8 13.0 142 156-304 6-192 (261)
118 KOG2028 ATPase related to the 97.7 0.00049 1.1E-08 76.3 12.8 164 156-329 138-332 (554)
119 TIGR02639 ClpA ATP-dependent C 97.6 0.00024 5.2E-09 93.7 12.4 142 154-303 180-358 (731)
120 PF12799 LRR_4: Leucine Rich r 97.6 4.7E-05 1E-09 59.3 3.5 41 575-616 1-41 (44)
121 PF12799 LRR_4: Leucine Rich r 97.6 5.6E-05 1.2E-09 58.8 3.4 38 531-568 2-39 (44)
122 PRK14950 DNA polymerase III su 97.6 0.00092 2E-08 85.6 16.5 174 153-335 13-223 (585)
123 KOG0531 Protein phosphatase 1, 97.6 1.2E-05 2.7E-10 99.2 -0.6 104 528-634 93-197 (414)
124 PRK06620 hypothetical protein; 97.6 0.0003 6.6E-09 77.3 10.3 152 163-331 26-187 (214)
125 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00057 1.2E-08 90.6 14.4 165 153-325 184-388 (852)
126 PRK09376 rho transcription ter 97.6 0.00016 3.5E-09 83.7 8.0 45 168-213 159-204 (416)
127 CHL00181 cbbX CbbX; Provisiona 97.5 0.0009 1.9E-08 77.2 13.6 119 179-304 61-210 (287)
128 PRK06647 DNA polymerase III su 97.5 0.0012 2.5E-08 83.2 15.7 173 153-333 13-220 (563)
129 PRK14953 DNA polymerase III su 97.5 0.0016 3.4E-08 80.7 16.5 174 153-334 13-221 (486)
130 COG2255 RuvB Holliday junction 97.5 0.0011 2.4E-08 72.0 12.7 177 152-331 22-221 (332)
131 PRK14965 DNA polymerase III su 97.5 0.00097 2.1E-08 84.8 14.3 173 153-333 13-221 (576)
132 PRK14087 dnaA chromosomal repl 97.5 0.00071 1.5E-08 83.2 12.6 151 178-337 142-323 (450)
133 PTZ00361 26 proteosome regulat 97.5 0.00069 1.5E-08 82.0 12.2 166 154-327 181-389 (438)
134 KOG0531 Protein phosphatase 1, 97.5 2.8E-05 6E-10 96.1 0.2 80 528-608 116-196 (414)
135 cd01128 rho_factor Transcripti 97.5 0.00023 4.9E-09 79.6 7.4 37 176-213 15-51 (249)
136 PRK05563 DNA polymerase III su 97.5 0.0019 4E-08 81.8 16.1 171 153-331 13-218 (559)
137 CHL00095 clpC Clp protease ATP 97.4 0.00076 1.7E-08 90.1 13.3 141 155-303 178-354 (821)
138 PRK07399 DNA polymerase III su 97.4 0.0064 1.4E-07 71.1 19.3 168 155-333 3-221 (314)
139 PTZ00454 26S protease regulato 97.4 0.0013 2.9E-08 79.1 13.9 170 154-328 143-352 (398)
140 PRK14948 DNA polymerase III su 97.4 0.002 4.4E-08 82.0 16.2 174 153-335 13-224 (620)
141 TIGR02880 cbbX_cfxQ probable R 97.4 0.0015 3.2E-08 75.6 13.3 119 179-304 60-209 (284)
142 KOG1859 Leucine-rich repeat pr 97.4 1.6E-05 3.5E-10 95.2 -3.1 149 522-684 102-286 (1096)
143 PF14516 AAA_35: AAA-like doma 97.4 0.035 7.5E-07 66.0 24.6 181 152-340 7-246 (331)
144 PHA02544 44 clamp loader, smal 97.4 0.00095 2.1E-08 79.5 11.6 141 152-301 17-171 (316)
145 PRK05707 DNA polymerase III su 97.3 0.0026 5.6E-08 74.7 14.2 145 177-333 22-203 (328)
146 TIGR03689 pup_AAA proteasome A 97.3 0.0032 6.8E-08 77.4 14.6 147 154-305 180-380 (512)
147 TIGR00362 DnaA chromosomal rep 97.3 0.0013 2.8E-08 81.1 11.3 145 177-331 136-308 (405)
148 KOG3665 ZYG-1-like serine/thre 97.3 0.00015 3.2E-09 93.0 3.1 88 521-608 139-230 (699)
149 PRK11034 clpA ATP-dependent Cl 97.3 0.00083 1.8E-08 87.1 9.9 140 156-303 186-362 (758)
150 PRK10536 hypothetical protein; 97.2 0.0024 5.3E-08 70.2 11.6 58 154-213 53-110 (262)
151 TIGR01241 FtsH_fam ATP-depende 97.2 0.0043 9.4E-08 78.3 15.1 170 153-327 52-260 (495)
152 PRK10865 protein disaggregatio 97.2 0.0021 4.7E-08 85.6 12.9 142 154-303 176-354 (857)
153 PRK14088 dnaA chromosomal repl 97.2 0.0023 5E-08 78.8 12.2 157 166-331 118-303 (440)
154 PF00004 AAA: ATPase family as 97.2 0.0011 2.4E-08 67.3 7.8 55 180-239 1-70 (132)
155 PRK11331 5-methylcytosine-spec 97.1 0.0019 4E-08 77.0 10.5 82 156-239 175-284 (459)
156 PRK00149 dnaA chromosomal repl 97.1 0.0035 7.7E-08 78.1 13.6 158 164-331 133-320 (450)
157 COG1373 Predicted ATPase (AAA+ 97.1 0.0027 5.8E-08 76.9 12.0 125 160-298 21-162 (398)
158 PF02562 PhoH: PhoH-like prote 97.1 0.00067 1.4E-08 72.7 6.0 101 161-273 5-157 (205)
159 COG1222 RPT1 ATP-dependent 26S 97.1 0.0083 1.8E-07 67.6 14.5 174 154-338 149-372 (406)
160 PRK08769 DNA polymerase III su 97.1 0.0091 2E-07 69.4 15.7 157 163-333 11-208 (319)
161 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0026 5.6E-08 85.3 12.8 142 154-303 171-349 (852)
162 PRK14086 dnaA chromosomal repl 97.1 0.0029 6.2E-08 78.7 11.9 145 178-330 315-485 (617)
163 PHA00729 NTP-binding motif con 97.1 0.0021 4.6E-08 69.6 9.4 115 166-303 6-140 (226)
164 COG1474 CDC6 Cdc6-related prot 97.1 0.023 4.9E-07 67.7 18.7 172 157-335 18-240 (366)
165 COG0593 DnaA ATPase involved i 97.0 0.036 7.7E-07 65.7 19.6 122 176-304 112-258 (408)
166 KOG3665 ZYG-1-like serine/thre 97.0 0.00033 7.1E-09 89.9 2.8 107 501-609 145-261 (699)
167 PF13191 AAA_16: AAA ATPase do 97.0 0.0007 1.5E-08 73.6 5.0 48 157-204 1-51 (185)
168 COG1223 Predicted ATPase (AAA+ 97.0 0.0046 1E-07 65.8 10.5 164 155-326 120-318 (368)
169 TIGR00767 rho transcription te 97.0 0.0016 3.4E-08 76.3 7.8 37 176-213 167-203 (415)
170 CHL00176 ftsH cell division pr 97.0 0.0086 1.9E-07 76.4 15.0 163 155-326 182-387 (638)
171 PRK12422 chromosomal replicati 97.0 0.0039 8.5E-08 76.4 11.3 139 178-326 142-306 (445)
172 KOG1909 Ran GTPase-activating 96.9 0.00034 7.4E-09 77.9 1.7 82 527-608 27-130 (382)
173 CHL00195 ycf46 Ycf46; Provisio 96.9 0.025 5.4E-07 69.9 17.9 169 155-328 227-430 (489)
174 PRK06871 DNA polymerase III su 96.9 0.022 4.8E-07 66.3 16.3 155 163-330 9-200 (325)
175 PF13401 AAA_22: AAA domain; P 96.9 0.0017 3.8E-08 65.8 6.5 86 177-271 4-125 (131)
176 KOG1909 Ran GTPase-activating 96.9 0.00021 4.5E-09 79.5 -0.7 157 504-665 30-223 (382)
177 PTZ00202 tuzin; Provisional 96.8 0.012 2.5E-07 68.9 13.0 140 151-303 257-434 (550)
178 TIGR00602 rad24 checkpoint pro 96.8 0.0051 1.1E-07 77.7 11.0 51 152-202 80-135 (637)
179 KOG0741 AAA+-type ATPase [Post 96.8 0.027 6E-07 66.2 15.4 141 176-323 537-704 (744)
180 PRK08058 DNA polymerase III su 96.8 0.017 3.6E-07 68.5 14.4 139 157-302 6-181 (329)
181 PF05673 DUF815: Protein of un 96.8 0.058 1.3E-06 58.9 16.7 84 152-237 23-116 (249)
182 PRK08118 topology modulation p 96.7 0.0025 5.5E-08 67.2 5.7 35 178-212 2-37 (167)
183 PRK06090 DNA polymerase III su 96.6 0.076 1.6E-06 61.8 17.8 155 163-333 10-201 (319)
184 COG1875 NYN ribonuclease and A 96.6 0.0066 1.4E-07 68.4 8.3 57 157-213 225-282 (436)
185 PRK07993 DNA polymerase III su 96.5 0.045 9.8E-07 64.6 15.6 156 163-331 9-202 (334)
186 KOG4579 Leucine-rich repeat (L 96.5 0.00058 1.3E-08 65.4 -0.1 76 518-593 65-141 (177)
187 KOG0743 AAA+-type ATPase [Post 96.4 0.33 7.1E-06 57.4 21.2 169 178-354 236-433 (457)
188 KOG2982 Uncharacterized conser 96.4 0.00057 1.2E-08 73.9 -1.2 75 531-608 46-131 (418)
189 KOG4579 Leucine-rich repeat (L 96.4 0.00091 2E-08 64.2 0.2 90 527-617 50-141 (177)
190 PF04665 Pox_A32: Poxvirus A32 96.4 0.0072 1.6E-07 66.4 7.1 33 179-213 15-47 (241)
191 PF13177 DNA_pol3_delta2: DNA 96.4 0.023 5E-07 59.6 10.6 125 160-291 1-162 (162)
192 KOG1644 U2-associated snRNP A' 96.3 0.0048 1E-07 63.7 5.0 83 526-608 60-150 (233)
193 TIGR01243 CDC48 AAA family ATP 96.3 0.032 6.8E-07 74.3 14.3 164 155-327 452-657 (733)
194 KOG0991 Replication factor C, 96.3 0.006 1.3E-07 63.9 5.6 87 153-239 24-125 (333)
195 TIGR00763 lon ATP-dependent pr 96.3 0.23 5E-06 66.3 22.0 46 157-202 321-372 (775)
196 PRK06964 DNA polymerase III su 96.2 0.067 1.4E-06 62.9 14.6 152 165-333 10-225 (342)
197 PF10443 RNA12: RNA12 protein; 96.2 0.069 1.5E-06 63.0 14.2 180 161-342 1-287 (431)
198 COG1618 Predicted nucleotide k 96.2 0.011 2.4E-07 58.9 6.6 29 177-205 5-33 (179)
199 KOG2227 Pre-initiation complex 96.2 0.15 3.2E-06 60.0 16.3 164 155-326 149-361 (529)
200 KOG1644 U2-associated snRNP A' 96.2 0.0057 1.2E-07 63.2 4.5 124 533-663 22-148 (233)
201 COG2812 DnaX DNA polymerase II 96.2 0.027 5.9E-07 68.8 11.0 169 153-329 13-216 (515)
202 KOG2004 Mitochondrial ATP-depe 96.2 0.082 1.8E-06 65.0 14.7 82 157-239 412-517 (906)
203 PRK08116 hypothetical protein; 96.1 0.0079 1.7E-07 68.7 6.1 34 178-213 115-148 (268)
204 KOG2982 Uncharacterized conser 96.1 0.0038 8.2E-08 67.8 3.0 175 487-668 50-262 (418)
205 KOG0733 Nuclear AAA ATPase (VC 96.1 0.12 2.6E-06 62.4 15.1 148 154-303 188-374 (802)
206 PRK08181 transposase; Validate 96.0 0.005 1.1E-07 69.8 3.9 64 170-239 101-179 (269)
207 KOG0731 AAA+-type ATPase conta 96.0 0.062 1.3E-06 67.9 13.6 171 154-330 309-521 (774)
208 COG0466 Lon ATP-dependent Lon 96.0 0.033 7.1E-07 68.8 10.7 137 158-303 325-508 (782)
209 KOG0730 AAA+-type ATPase [Post 96.0 0.21 4.4E-06 61.4 17.2 146 152-304 430-616 (693)
210 TIGR02639 ClpA ATP-dependent C 96.0 0.04 8.6E-07 73.0 12.3 83 157-239 455-565 (731)
211 PRK07261 topology modulation p 95.9 0.014 3E-07 62.0 6.5 58 179-239 2-69 (171)
212 PF01695 IstB_IS21: IstB-like 95.9 0.0045 9.7E-08 65.9 2.7 59 177-239 47-120 (178)
213 TIGR01243 CDC48 AAA family ATP 95.9 0.078 1.7E-06 70.6 14.6 166 154-329 176-383 (733)
214 PRK08939 primosomal protein Dn 95.9 0.017 3.6E-07 67.3 7.3 83 160-243 135-235 (306)
215 smart00763 AAA_PrkA PrkA AAA d 95.9 0.012 2.6E-07 68.4 6.1 47 157-203 52-104 (361)
216 TIGR03345 VI_ClpV1 type VI sec 95.9 0.019 4.1E-07 76.5 8.8 84 156-239 566-680 (852)
217 PF13207 AAA_17: AAA domain; P 95.9 0.0066 1.4E-07 60.5 3.5 23 179-201 1-23 (121)
218 PF13604 AAA_30: AAA domain; P 95.8 0.036 7.7E-07 60.3 9.2 96 167-272 8-131 (196)
219 COG3267 ExeA Type II secretory 95.8 0.17 3.7E-06 55.0 13.8 167 163-336 38-248 (269)
220 PRK12377 putative replication 95.8 0.032 6.9E-07 62.6 8.9 62 176-239 100-175 (248)
221 cd01133 F1-ATPase_beta F1 ATP 95.8 0.017 3.7E-07 64.9 6.6 29 176-204 68-96 (274)
222 PRK06526 transposase; Provisio 95.8 0.0063 1.4E-07 68.7 3.2 61 177-239 98-171 (254)
223 PRK06921 hypothetical protein; 95.7 0.027 5.8E-07 64.3 7.8 60 176-236 116-186 (266)
224 smart00382 AAA ATPases associa 95.7 0.02 4.2E-07 59.0 6.3 27 178-204 3-29 (148)
225 PRK10787 DNA-binding ATP-depen 95.6 0.048 1E-06 71.8 10.9 145 157-303 323-506 (784)
226 PRK09183 transposase/IS protei 95.6 0.012 2.7E-07 66.9 4.8 26 178-203 103-128 (259)
227 KOG0727 26S proteasome regulat 95.6 0.31 6.7E-06 51.9 14.3 82 156-239 155-260 (408)
228 PRK12727 flagellar biosynthesi 95.5 0.26 5.7E-06 60.3 15.6 28 177-204 350-377 (559)
229 KOG0734 AAA+-type ATPase conta 95.5 0.024 5.2E-07 66.7 6.6 84 155-239 303-408 (752)
230 PRK06696 uridine kinase; Valid 95.5 0.022 4.7E-07 63.7 6.1 43 160-202 2-47 (223)
231 COG0464 SpoVK ATPases of the A 95.4 0.1 2.2E-06 66.3 12.7 143 156-305 242-425 (494)
232 KOG2035 Replication factor C, 95.3 0.67 1.5E-05 50.8 16.1 211 157-378 14-282 (351)
233 COG1484 DnaC DNA replication p 95.3 0.047 1E-06 61.8 8.2 63 176-239 104-179 (254)
234 KOG0739 AAA+-type ATPase [Post 95.3 0.17 3.7E-06 55.4 11.7 170 155-327 132-335 (439)
235 PRK06835 DNA replication prote 95.3 0.035 7.7E-07 65.1 7.4 35 177-213 183-217 (329)
236 COG0542 clpA ATP-binding subun 95.3 0.1 2.3E-06 66.6 11.8 149 155-303 169-346 (786)
237 COG2884 FtsE Predicted ATPase 95.3 0.046 9.9E-07 56.2 6.9 28 176-203 27-54 (223)
238 PRK08699 DNA polymerase III su 95.3 0.21 4.6E-06 58.8 13.5 137 177-329 21-202 (325)
239 PF03215 Rad17: Rad17 cell cyc 95.2 0.13 2.8E-06 64.2 12.0 54 156-213 19-77 (519)
240 KOG0733 Nuclear AAA ATPase (VC 95.2 0.23 5E-06 60.0 13.3 163 156-327 511-718 (802)
241 KOG2123 Uncharacterized conser 95.1 0.0025 5.4E-08 68.6 -2.6 105 552-661 18-123 (388)
242 KOG0736 Peroxisome assembly fa 95.1 0.15 3.3E-06 63.3 11.9 84 154-239 670-776 (953)
243 KOG0735 AAA+-type ATPase [Post 95.1 0.061 1.3E-06 65.8 8.5 145 178-326 432-608 (952)
244 KOG2739 Leucine-rich acidic nu 95.1 0.013 2.8E-07 63.6 2.5 80 528-608 41-126 (260)
245 PRK07952 DNA replication prote 95.0 0.084 1.8E-06 59.1 8.8 73 163-239 83-174 (244)
246 PRK13695 putative NTPase; Prov 95.0 0.07 1.5E-06 57.1 7.9 24 179-202 2-25 (174)
247 COG0194 Gmk Guanylate kinase [ 95.0 0.054 1.2E-06 56.1 6.5 25 177-201 4-28 (191)
248 PLN00020 ribulose bisphosphate 95.0 0.053 1.1E-06 62.6 7.0 61 176-239 147-224 (413)
249 PRK10733 hflB ATP-dependent me 94.9 0.17 3.7E-06 65.8 12.5 167 155-327 151-357 (644)
250 COG5238 RNA1 Ran GTPase-activa 94.9 0.019 4E-07 61.9 2.9 127 527-673 27-175 (388)
251 cd02117 NifH_like This family 94.8 0.032 6.9E-07 61.9 4.9 27 178-204 1-27 (212)
252 KOG2543 Origin recognition com 94.8 0.087 1.9E-06 60.2 7.9 138 156-303 6-193 (438)
253 TIGR03346 chaperone_ClpB ATP-d 94.7 0.061 1.3E-06 72.4 8.1 84 156-239 565-679 (852)
254 PRK06547 hypothetical protein; 94.7 0.046 9.9E-07 57.8 5.3 36 167-202 5-40 (172)
255 KOG1532 GTPase XAB1, interacts 94.6 0.086 1.9E-06 57.0 7.1 38 176-213 18-55 (366)
256 CHL00095 clpC Clp protease ATP 94.6 0.091 2E-06 70.6 9.3 84 156-239 509-623 (821)
257 PRK11034 clpA ATP-dependent Cl 94.6 0.062 1.4E-06 70.1 7.4 83 157-239 459-569 (758)
258 PF05621 TniB: Bacterial TniB 94.6 0.28 6.1E-06 55.6 11.5 161 163-331 44-259 (302)
259 TIGR01425 SRP54_euk signal rec 94.6 0.44 9.6E-06 57.6 13.9 28 176-203 99-126 (429)
260 PF06309 Torsin: Torsin; Inte 94.6 0.17 3.6E-06 49.3 8.3 46 156-201 25-77 (127)
261 PRK12608 transcription termina 94.6 0.12 2.5E-06 60.7 8.8 38 166-203 121-159 (380)
262 PRK15455 PrkA family serine pr 94.5 0.052 1.1E-06 66.3 5.8 48 155-202 75-128 (644)
263 COG1419 FlhF Flagellar GTP-bin 94.5 0.85 1.8E-05 53.7 15.3 37 165-201 187-228 (407)
264 PF00910 RNA_helicase: RNA hel 94.4 0.026 5.7E-07 54.5 2.6 59 180-240 1-62 (107)
265 PRK10865 protein disaggregatio 94.4 0.087 1.9E-06 70.6 8.3 47 156-202 568-623 (857)
266 PF00560 LRR_1: Leucine Rich R 94.4 0.016 3.5E-07 37.4 0.7 21 576-596 1-21 (22)
267 PRK07667 uridine kinase; Provi 94.4 0.062 1.3E-06 58.4 5.7 38 166-203 4-43 (193)
268 TIGR01287 nifH nitrogenase iro 94.3 0.044 9.4E-07 63.8 4.8 27 178-204 1-27 (275)
269 PF07693 KAP_NTPase: KAP famil 94.3 1 2.2E-05 53.9 16.8 43 162-204 2-47 (325)
270 PRK13230 nitrogenase reductase 94.3 0.05 1.1E-06 63.3 5.3 27 178-204 2-28 (279)
271 COG4088 Predicted nucleotide k 94.3 0.094 2E-06 54.5 6.3 27 178-204 2-28 (261)
272 PRK09270 nucleoside triphospha 94.2 0.073 1.6E-06 59.8 6.0 29 175-203 31-59 (229)
273 PRK13236 nitrogenase reductase 94.2 0.06 1.3E-06 62.9 5.5 31 174-204 3-33 (296)
274 COG0542 clpA ATP-binding subun 94.2 0.11 2.4E-06 66.4 7.9 46 156-201 491-545 (786)
275 PF00485 PRK: Phosphoribulokin 94.1 0.041 8.9E-07 60.0 3.7 26 179-204 1-26 (194)
276 cd01131 PilT Pilus retraction 94.1 0.089 1.9E-06 57.4 6.2 25 178-202 2-26 (198)
277 PRK13232 nifH nitrogenase redu 94.0 0.059 1.3E-06 62.5 4.9 26 178-203 2-27 (273)
278 PRK13235 nifH nitrogenase redu 94.0 0.061 1.3E-06 62.4 5.0 26 178-203 2-27 (274)
279 PF00006 ATP-synt_ab: ATP synt 93.9 0.12 2.6E-06 56.5 6.8 26 177-202 15-40 (215)
280 PRK12597 F0F1 ATP synthase sub 93.9 0.12 2.6E-06 62.9 7.3 37 176-213 142-178 (461)
281 PF00448 SRP54: SRP54-type pro 93.8 0.14 3.1E-06 55.4 7.1 28 177-204 1-28 (196)
282 PRK04132 replication factor C 93.8 0.53 1.1E-05 61.8 13.3 140 185-333 574-731 (846)
283 cd01135 V_A-ATPase_B V/A-type 93.8 0.15 3.3E-06 57.2 7.3 38 176-213 68-107 (276)
284 PF13238 AAA_18: AAA domain; P 93.7 0.05 1.1E-06 54.9 3.3 22 180-201 1-22 (129)
285 PF08433 KTI12: Chromatin asso 93.7 0.15 3.3E-06 58.1 7.4 61 178-239 2-82 (270)
286 KOG0729 26S proteasome regulat 93.7 0.19 4.1E-06 53.9 7.4 83 155-239 176-282 (435)
287 PTZ00301 uridine kinase; Provi 93.7 0.063 1.4E-06 58.7 4.0 26 177-202 3-28 (210)
288 KOG2739 Leucine-rich acidic nu 93.6 0.039 8.5E-07 60.0 2.3 82 526-607 61-152 (260)
289 PF14532 Sigma54_activ_2: Sigm 93.6 0.03 6.4E-07 57.2 1.3 105 159-272 1-110 (138)
290 COG1428 Deoxynucleoside kinase 93.6 0.052 1.1E-06 57.3 3.1 26 177-202 4-29 (216)
291 cd01120 RecA-like_NTPases RecA 93.6 0.18 3.8E-06 53.3 7.4 25 179-203 1-25 (165)
292 TIGR01281 DPOR_bchL light-inde 93.6 0.08 1.7E-06 61.3 5.0 25 179-203 2-26 (268)
293 PRK05541 adenylylsulfate kinas 93.5 0.19 4E-06 53.9 7.4 36 176-213 6-41 (176)
294 cd02019 NK Nucleoside/nucleoti 93.5 0.064 1.4E-06 46.9 3.0 23 179-201 1-23 (69)
295 TIGR03499 FlhF flagellar biosy 93.4 0.16 3.4E-06 58.8 7.1 29 176-204 193-221 (282)
296 COG1066 Sms Predicted ATP-depe 93.4 0.13 2.9E-06 59.5 6.2 34 177-213 93-126 (456)
297 PRK11889 flhF flagellar biosyn 93.4 0.16 3.5E-06 59.6 6.9 27 176-202 240-266 (436)
298 PRK08233 hypothetical protein; 93.4 0.067 1.4E-06 57.8 3.7 25 177-201 3-27 (182)
299 PF00625 Guanylate_kin: Guanyl 93.4 0.12 2.6E-06 55.7 5.7 35 177-213 2-36 (183)
300 cd01123 Rad51_DMC1_radA Rad51_ 93.4 0.17 3.6E-06 57.4 7.1 37 177-213 19-59 (235)
301 PRK00771 signal recognition pa 93.3 1.1 2.3E-05 54.9 14.1 28 176-203 94-121 (437)
302 PRK05480 uridine/cytidine kina 93.3 0.077 1.7E-06 58.8 4.1 26 176-201 5-30 (209)
303 TIGR00235 udk uridine kinase. 93.3 0.076 1.6E-06 58.6 3.9 27 176-202 5-31 (207)
304 PRK13233 nifH nitrogenase redu 93.3 0.095 2.1E-06 60.9 4.9 25 178-202 3-27 (275)
305 COG0563 Adk Adenylate kinase a 93.2 0.063 1.4E-06 57.0 3.1 57 179-239 2-66 (178)
306 cd03281 ABC_MSH5_euk MutS5 hom 93.2 0.11 2.5E-06 57.2 5.3 24 177-200 29-52 (213)
307 KOG0728 26S proteasome regulat 93.2 0.99 2.2E-05 48.2 11.6 169 158-336 149-366 (404)
308 TIGR02237 recomb_radB DNA repa 93.2 0.27 5.8E-06 54.5 8.3 35 177-213 12-46 (209)
309 PF02374 ArsA_ATPase: Anion-tr 93.2 0.1 2.2E-06 61.0 5.0 27 178-204 2-28 (305)
310 COG0572 Udk Uridine kinase [Nu 93.2 0.079 1.7E-06 56.9 3.7 27 176-202 7-33 (218)
311 PRK13531 regulatory ATPase Rav 93.2 0.12 2.6E-06 62.6 5.6 51 156-208 20-70 (498)
312 PF03029 ATP_bind_1: Conserved 93.2 0.094 2E-06 58.7 4.5 24 182-205 1-24 (238)
313 COG0470 HolB ATPase involved i 93.2 0.53 1.2E-05 56.4 11.5 129 158-293 3-171 (325)
314 KOG2170 ATPase of the AAA+ sup 93.1 0.26 5.6E-06 54.7 7.5 83 157-239 83-190 (344)
315 TIGR03305 alt_F1F0_F1_bet alte 93.1 0.2 4.3E-06 60.6 7.4 37 176-213 137-173 (449)
316 PRK09280 F0F1 ATP synthase sub 93.1 0.18 3.9E-06 61.1 7.0 28 176-203 143-170 (463)
317 COG0465 HflB ATP-dependent Zn 93.1 0.46 9.9E-06 59.3 10.5 172 154-329 148-357 (596)
318 PRK12678 transcription termina 93.1 0.2 4.4E-06 61.1 7.2 45 168-213 406-451 (672)
319 PRK13234 nifH nitrogenase redu 93.0 0.12 2.7E-06 60.3 5.4 28 176-203 3-30 (295)
320 PF03205 MobB: Molybdopterin g 93.0 0.14 3.1E-06 52.0 5.2 27 178-204 1-27 (140)
321 PRK13185 chlL protochlorophyll 93.0 0.12 2.5E-06 60.1 5.2 26 178-203 3-28 (270)
322 PRK10463 hydrogenase nickel in 93.0 0.5 1.1E-05 53.8 9.9 37 167-203 94-130 (290)
323 cd00561 CobA_CobO_BtuR ATP:cor 93.0 0.28 6.2E-06 50.5 7.3 26 178-203 3-28 (159)
324 PF00560 LRR_1: Leucine Rich R 93.0 0.051 1.1E-06 35.1 1.2 22 531-552 1-22 (22)
325 cd03283 ABC_MutS-like MutS-lik 92.9 0.16 3.4E-06 55.4 5.7 24 178-201 26-49 (199)
326 TIGR02858 spore_III_AA stage I 92.9 0.25 5.4E-06 56.3 7.4 101 165-275 98-232 (270)
327 PRK12724 flagellar biosynthesi 92.9 0.26 5.6E-06 58.8 7.7 26 177-202 223-248 (432)
328 PRK13768 GTPase; Provisional 92.9 0.13 2.7E-06 58.6 5.1 25 178-202 3-27 (253)
329 PF13245 AAA_19: Part of AAA d 92.9 0.31 6.7E-06 43.4 6.4 48 176-223 9-62 (76)
330 PRK08972 fliI flagellum-specif 92.9 0.13 2.8E-06 61.8 5.3 25 176-200 161-185 (444)
331 PF13671 AAA_33: AAA domain; P 92.9 0.088 1.9E-06 54.2 3.5 23 179-201 1-23 (143)
332 COG3640 CooC CO dehydrogenase 92.8 0.14 3E-06 54.9 4.6 24 179-202 2-25 (255)
333 TIGR02012 tigrfam_recA protein 92.7 0.3 6.5E-06 56.8 7.8 35 177-213 55-89 (321)
334 PRK06762 hypothetical protein; 92.7 0.1 2.2E-06 55.3 3.9 25 177-201 2-26 (166)
335 PF12775 AAA_7: P-loop contain 92.7 0.16 3.5E-06 58.2 5.6 73 166-239 23-112 (272)
336 cd02040 NifH NifH gene encodes 92.7 0.13 2.8E-06 59.8 4.9 26 178-203 2-27 (270)
337 PF01583 APS_kinase: Adenylyls 92.6 0.43 9.3E-06 49.0 7.9 28 177-204 2-29 (156)
338 KOG1969 DNA replication checkp 92.6 0.19 4E-06 62.2 6.1 59 177-239 326-399 (877)
339 TIGR02016 BchX chlorophyllide 92.6 0.14 3E-06 59.7 5.0 26 178-203 1-26 (296)
340 PRK07132 DNA polymerase III su 92.6 1.9 4.2E-05 49.9 14.2 154 165-332 5-184 (299)
341 PRK08927 fliI flagellum-specif 92.6 0.21 4.6E-06 60.3 6.6 26 176-201 157-182 (442)
342 PRK05703 flhF flagellar biosyn 92.5 0.62 1.3E-05 57.1 10.7 26 177-202 221-246 (424)
343 KOG3864 Uncharacterized conser 92.5 0.017 3.6E-07 60.1 -2.4 61 1326-1386 104-165 (221)
344 PRK14722 flhF flagellar biosyn 92.5 0.26 5.6E-06 58.5 7.1 27 177-203 137-163 (374)
345 KOG2228 Origin recognition com 92.5 0.78 1.7E-05 51.8 10.2 146 156-303 24-219 (408)
346 TIGR00554 panK_bact pantothena 92.5 0.17 3.6E-06 58.1 5.3 28 175-202 60-87 (290)
347 PRK03839 putative kinase; Prov 92.4 0.11 2.4E-06 55.9 3.6 24 179-202 2-25 (180)
348 TIGR01360 aden_kin_iso1 adenyl 92.3 0.12 2.5E-06 56.3 3.8 26 176-201 2-27 (188)
349 COG2274 SunT ABC-type bacterio 92.3 4 8.6E-05 53.3 18.0 25 177-201 499-523 (709)
350 COG2607 Predicted ATPase (AAA+ 92.3 3.3 7.2E-05 44.8 14.0 94 154-249 58-164 (287)
351 PRK10416 signal recognition pa 92.2 0.32 6.8E-06 57.1 7.4 28 176-203 113-140 (318)
352 PF00142 Fer4_NifH: 4Fe-4S iro 92.2 0.19 4.2E-06 55.4 5.1 27 178-204 1-27 (273)
353 cd00983 recA RecA is a bacter 92.2 0.35 7.7E-06 56.2 7.6 35 177-213 55-89 (325)
354 COG0003 ArsA Predicted ATPase 92.2 0.17 3.8E-06 58.7 5.1 28 177-204 2-29 (322)
355 cd01121 Sms Sms (bacterial rad 92.1 0.29 6.2E-06 58.7 7.0 44 177-222 82-128 (372)
356 cd02032 Bchl_like This family 92.1 0.17 3.7E-06 58.5 5.0 26 179-204 2-27 (267)
357 KOG0726 26S proteasome regulat 92.1 0.32 7E-06 53.1 6.5 83 154-238 183-289 (440)
358 PRK14737 gmk guanylate kinase; 92.1 0.2 4.3E-06 53.9 5.1 26 176-201 3-28 (186)
359 TIGR01041 ATP_syn_B_arch ATP s 92.0 0.32 6.9E-06 59.4 7.2 28 176-203 140-167 (458)
360 TIGR00064 ftsY signal recognit 92.0 0.22 4.7E-06 57.1 5.6 27 176-202 71-97 (272)
361 PRK12723 flagellar biosynthesi 92.0 0.56 1.2E-05 56.3 9.2 28 176-203 173-200 (388)
362 cd02025 PanK Pantothenate kina 92.0 0.11 2.4E-06 57.5 3.1 24 179-202 1-24 (220)
363 KOG0744 AAA+-type ATPase [Post 92.0 0.32 6.9E-06 54.3 6.4 27 178-204 178-204 (423)
364 KOG0652 26S proteasome regulat 92.0 1.7 3.6E-05 46.9 11.4 175 152-337 167-391 (424)
365 PF03308 ArgK: ArgK protein; 92.0 0.24 5.3E-06 54.4 5.5 41 164-204 14-56 (266)
366 cd02024 NRK1 Nicotinamide ribo 91.9 0.11 2.5E-06 55.4 3.0 23 179-201 1-23 (187)
367 PRK00625 shikimate kinase; Pro 91.9 0.13 2.8E-06 54.5 3.3 24 179-202 2-25 (173)
368 KOG3864 Uncharacterized conser 91.9 0.048 1E-06 56.8 0.1 64 1038-1109 103-166 (221)
369 PF10236 DAP3: Mitochondrial r 91.9 6.7 0.00014 46.1 17.8 46 284-329 258-305 (309)
370 COG1102 Cmk Cytidylate kinase 91.8 0.14 3E-06 51.4 3.0 24 179-202 2-25 (179)
371 cd01134 V_A-ATPase_A V/A-type 91.7 0.33 7.1E-06 56.2 6.5 42 168-213 147-189 (369)
372 PRK05917 DNA polymerase III su 91.7 2.3 5E-05 48.7 13.2 120 164-290 5-154 (290)
373 PRK08149 ATP synthase SpaL; Va 91.7 0.17 3.6E-06 61.1 4.3 26 176-201 150-175 (428)
374 PRK06936 type III secretion sy 91.7 0.22 4.8E-06 60.0 5.3 26 176-201 161-186 (439)
375 TIGR00150 HI0065_YjeE ATPase, 91.7 0.32 7E-06 48.4 5.6 26 177-202 22-47 (133)
376 PRK04040 adenylate kinase; Pro 91.7 0.15 3.4E-06 54.8 3.7 25 178-202 3-27 (188)
377 CHL00072 chlL photochlorophyll 91.7 0.2 4.3E-06 58.3 4.8 24 180-203 3-26 (290)
378 PRK09354 recA recombinase A; P 91.6 0.44 9.6E-06 55.8 7.5 35 177-213 60-94 (349)
379 cd03287 ABC_MSH3_euk MutS3 hom 91.6 0.42 9.1E-06 52.9 7.0 93 176-276 30-158 (222)
380 PRK10751 molybdopterin-guanine 91.6 0.2 4.3E-06 52.5 4.2 29 176-204 5-33 (173)
381 cd02023 UMPK Uridine monophosp 91.6 0.12 2.7E-06 56.6 2.9 23 179-201 1-23 (198)
382 PF13306 LRR_5: Leucine rich r 91.5 0.36 7.7E-06 48.6 6.0 104 522-631 4-111 (129)
383 TIGR01039 atpD ATP synthase, F 91.5 0.46 1E-05 57.5 7.6 37 176-213 142-178 (461)
384 PRK14721 flhF flagellar biosyn 91.5 0.51 1.1E-05 57.0 8.1 25 177-201 191-215 (420)
385 KOG2123 Uncharacterized conser 91.4 0.027 5.8E-07 61.0 -2.4 98 531-629 20-123 (388)
386 PRK00131 aroK shikimate kinase 91.4 0.17 3.8E-06 54.1 3.8 26 177-202 4-29 (175)
387 PRK09361 radB DNA repair and r 91.4 0.54 1.2E-05 52.7 7.9 35 177-213 23-57 (225)
388 KOG1514 Origin recognition com 91.4 3.3 7.2E-05 51.7 14.6 47 156-202 396-447 (767)
389 smart00072 GuKc Guanylate kina 91.3 0.33 7.2E-06 52.4 5.9 25 177-201 2-26 (184)
390 cd03114 ArgK-like The function 91.3 0.25 5.3E-06 51.0 4.5 26 179-204 1-26 (148)
391 KOG0735 AAA+-type ATPase [Post 91.3 2.9 6.2E-05 52.1 13.8 79 156-239 667-772 (952)
392 PRK10867 signal recognition pa 91.2 6 0.00013 48.4 16.8 29 176-204 99-127 (433)
393 cd02034 CooC The accessory pro 91.2 0.3 6.6E-06 47.8 4.8 24 180-203 2-25 (116)
394 PRK06217 hypothetical protein; 91.2 0.18 3.9E-06 54.4 3.6 24 179-202 3-26 (183)
395 COG1703 ArgK Putative periplas 91.2 0.3 6.4E-06 54.5 5.2 41 166-206 38-80 (323)
396 TIGR01069 mutS2 MutS2 family p 91.2 0.4 8.8E-06 63.2 7.4 167 176-354 321-522 (771)
397 PRK05342 clpX ATP-dependent pr 91.1 0.51 1.1E-05 57.3 7.8 46 157-202 72-133 (412)
398 cd02028 UMPK_like Uridine mono 91.1 0.17 3.8E-06 54.1 3.4 24 179-202 1-24 (179)
399 TIGR01359 UMP_CMP_kin_fam UMP- 91.1 0.15 3.3E-06 55.1 2.9 23 179-201 1-23 (183)
400 KOG0473 Leucine-rich repeat pr 91.1 0.014 3.1E-07 61.3 -4.7 90 520-609 32-122 (326)
401 PRK06002 fliI flagellum-specif 91.1 0.26 5.6E-06 59.6 5.0 24 177-200 165-188 (450)
402 COG0396 sufC Cysteine desulfur 91.1 0.37 8E-06 51.6 5.5 25 177-201 30-54 (251)
403 COG1348 NifH Nitrogenase subun 91.1 0.24 5.1E-06 52.7 4.1 26 178-203 2-27 (278)
404 TIGR02322 phosphon_PhnN phosph 91.0 0.18 3.8E-06 54.3 3.4 25 178-202 2-26 (179)
405 KOG0737 AAA+-type ATPase [Post 90.9 2.2 4.7E-05 49.3 11.7 83 155-239 91-198 (386)
406 PTZ00185 ATPase alpha subunit; 90.9 0.48 1E-05 57.4 6.9 26 176-201 188-214 (574)
407 TIGR00176 mobB molybdopterin-g 90.9 0.27 5.9E-06 51.0 4.4 26 179-204 1-26 (155)
408 cd03243 ABC_MutS_homologs The 90.9 0.3 6.4E-06 53.7 5.0 22 178-199 30-51 (202)
409 PF07726 AAA_3: ATPase family 90.8 0.15 3.3E-06 49.7 2.3 23 180-202 2-24 (131)
410 PRK04296 thymidine kinase; Pro 90.8 0.57 1.2E-05 50.7 7.0 26 178-203 3-28 (190)
411 cd02020 CMPK Cytidine monophos 90.8 0.18 4E-06 52.1 3.1 24 179-202 1-24 (147)
412 PRK00409 recombination and DNA 90.7 0.59 1.3E-05 61.9 8.4 168 175-354 325-527 (782)
413 cd01393 recA_like RecA is a b 90.7 0.61 1.3E-05 52.4 7.5 37 177-213 19-59 (226)
414 TIGR02030 BchI-ChlI magnesium 90.7 0.35 7.7E-06 57.0 5.7 47 155-201 3-49 (337)
415 KOG0738 AAA+-type ATPase [Post 90.7 0.53 1.1E-05 54.0 6.6 84 155-239 211-316 (491)
416 COG1763 MobB Molybdopterin-gua 90.7 0.22 4.8E-06 51.3 3.5 28 177-204 2-29 (161)
417 smart00534 MUTSac ATPase domai 90.7 0.32 6.8E-06 52.5 4.9 147 179-335 1-182 (185)
418 KOG0651 26S proteasome regulat 90.6 0.44 9.6E-06 53.0 5.8 61 177-239 166-237 (388)
419 PF13306 LRR_5: Leucine rich r 90.6 0.42 9.2E-06 48.0 5.5 115 502-625 10-128 (129)
420 PRK00889 adenylylsulfate kinas 90.6 0.29 6.2E-06 52.4 4.5 28 176-203 3-30 (175)
421 KOG1970 Checkpoint RAD17-RFC c 90.6 1.4 3.1E-05 53.1 10.3 47 163-213 89-142 (634)
422 TIGR00382 clpX endopeptidase C 90.6 0.6 1.3E-05 56.4 7.5 47 156-202 77-141 (413)
423 TIGR00708 cobA cob(I)alamin ad 90.5 0.73 1.6E-05 48.1 7.1 89 177-272 5-140 (173)
424 cd01136 ATPase_flagellum-secre 90.5 0.3 6.6E-06 56.8 4.8 26 176-201 68-93 (326)
425 PRK07594 type III secretion sy 90.5 0.27 5.7E-06 59.5 4.4 26 176-201 154-179 (433)
426 PRK06851 hypothetical protein; 90.5 1.7 3.8E-05 51.5 11.0 31 174-204 211-241 (367)
427 TIGR03574 selen_PSTK L-seryl-t 90.4 0.51 1.1E-05 53.8 6.6 25 179-203 1-25 (249)
428 PRK13949 shikimate kinase; Pro 90.4 0.23 5E-06 52.5 3.5 25 178-202 2-26 (169)
429 cd01132 F1_ATPase_alpha F1 ATP 90.4 0.47 1E-05 53.4 6.0 24 177-200 69-93 (274)
430 PRK04196 V-type ATP synthase s 90.4 0.53 1.2E-05 57.7 7.0 28 176-203 142-169 (460)
431 PRK13407 bchI magnesium chelat 90.3 0.36 7.8E-06 56.8 5.3 49 153-201 5-53 (334)
432 KOG0742 AAA+-type ATPase [Post 90.3 1.6 3.6E-05 50.2 10.0 58 177-238 384-454 (630)
433 cd00227 CPT Chloramphenicol (C 90.3 0.25 5.4E-06 52.9 3.7 24 178-201 3-26 (175)
434 TIGR00390 hslU ATP-dependent p 90.3 0.39 8.5E-06 57.1 5.5 47 156-202 12-72 (441)
435 PF05970 PIF1: PIF1-like helic 90.3 0.56 1.2E-05 56.7 7.0 42 162-203 7-48 (364)
436 cd02021 GntK Gluconate kinase 90.3 0.2 4.4E-06 52.0 2.9 23 179-201 1-23 (150)
437 PRK05688 fliI flagellum-specif 90.2 0.37 8E-06 58.4 5.3 25 176-200 167-191 (451)
438 PRK14723 flhF flagellar biosyn 90.1 0.7 1.5E-05 59.7 8.0 26 177-202 185-210 (767)
439 PF07728 AAA_5: AAA domain (dy 90.1 0.25 5.4E-06 50.6 3.4 22 180-201 2-23 (139)
440 cd01124 KaiC KaiC is a circadi 90.1 0.61 1.3E-05 50.5 6.7 24 179-202 1-24 (187)
441 PRK13947 shikimate kinase; Pro 90.1 0.24 5.2E-06 52.8 3.3 24 179-202 3-26 (171)
442 TIGR03263 guanyl_kin guanylate 90.1 0.21 4.6E-06 53.8 2.9 24 178-201 2-25 (180)
443 TIGR01420 pilT_fam pilus retra 90.0 0.53 1.2E-05 56.3 6.5 27 176-202 121-147 (343)
444 PRK05922 type III secretion sy 90.0 0.38 8.3E-06 58.1 5.2 25 176-200 156-180 (434)
445 TIGR00073 hypB hydrogenase acc 89.9 0.33 7.2E-06 53.5 4.4 32 170-201 15-46 (207)
446 PRK14530 adenylate kinase; Pro 89.9 0.26 5.7E-06 54.7 3.6 24 178-201 4-27 (215)
447 COG1936 Predicted nucleotide k 89.9 0.25 5.4E-06 50.5 2.9 20 179-198 2-21 (180)
448 PRK05439 pantothenate kinase; 89.9 0.48 1E-05 54.8 5.7 28 175-202 84-111 (311)
449 PRK07960 fliI flagellum-specif 89.9 0.27 5.8E-06 59.4 3.7 26 176-201 174-199 (455)
450 COG1124 DppF ABC-type dipeptid 89.7 0.25 5.5E-06 53.4 3.1 27 176-202 32-58 (252)
451 PRK05057 aroK shikimate kinase 89.7 0.29 6.4E-06 52.0 3.6 25 177-201 4-28 (172)
452 TIGR03496 FliI_clade1 flagella 89.7 0.45 9.8E-06 57.6 5.6 26 176-201 136-161 (411)
453 TIGR00416 sms DNA repair prote 89.7 0.57 1.2E-05 57.9 6.6 35 177-213 94-128 (454)
454 PRK14974 cell division protein 89.7 0.79 1.7E-05 53.9 7.4 28 176-203 139-166 (336)
455 PRK00300 gmk guanylate kinase; 89.7 0.29 6.3E-06 54.0 3.7 26 176-201 4-29 (205)
456 cd00820 PEPCK_HprK Phosphoenol 89.7 0.29 6.4E-06 46.5 3.1 22 177-198 15-36 (107)
457 KOG0473 Leucine-rich repeat pr 89.7 0.027 6E-07 59.2 -4.0 90 543-634 31-122 (326)
458 cd00071 GMPK Guanosine monopho 89.7 0.24 5.1E-06 50.4 2.7 23 179-201 1-23 (137)
459 PF13504 LRR_7: Leucine rich r 89.7 0.2 4.4E-06 30.0 1.3 16 576-591 2-17 (17)
460 PF08298 AAA_PrkA: PrkA AAA do 89.7 0.58 1.3E-05 54.2 6.0 47 156-202 61-113 (358)
461 CHL00081 chlI Mg-protoporyphyr 89.6 0.39 8.4E-06 56.6 4.8 49 154-202 15-63 (350)
462 TIGR02902 spore_lonB ATP-depen 89.6 0.43 9.3E-06 60.5 5.6 48 154-201 63-110 (531)
463 cd00464 SK Shikimate kinase (S 89.6 0.28 6.1E-06 51.2 3.4 23 180-202 2-24 (154)
464 PRK03846 adenylylsulfate kinas 89.6 0.46 1E-05 52.0 5.1 28 175-202 22-49 (198)
465 PRK12339 2-phosphoglycerate ki 89.6 0.32 7E-06 52.6 3.8 25 177-201 3-27 (197)
466 TIGR03498 FliI_clade3 flagella 89.5 0.36 7.7E-06 58.4 4.5 25 177-201 140-164 (418)
467 KOG0066 eIF2-interacting prote 89.5 0.82 1.8E-05 52.8 6.9 23 178-200 614-636 (807)
468 cd03115 SRP The signal recogni 89.5 0.48 1E-05 50.6 5.1 25 179-203 2-26 (173)
469 COG4136 ABC-type uncharacteriz 89.5 1.2 2.6E-05 44.0 7.0 37 177-213 28-64 (213)
470 PRK06820 type III secretion sy 89.4 0.49 1.1E-05 57.4 5.5 26 176-201 162-187 (440)
471 TIGR01313 therm_gnt_kin carboh 89.4 0.25 5.4E-06 52.2 2.7 22 180-201 1-22 (163)
472 PRK13975 thymidylate kinase; P 89.3 0.3 6.5E-06 53.5 3.5 26 178-203 3-28 (196)
473 KOG4252 GTP-binding protein [S 89.3 0.2 4.4E-06 50.2 1.8 81 179-272 22-105 (246)
474 PF03266 NTPase_1: NTPase; In 89.3 0.34 7.4E-06 51.0 3.7 24 180-203 2-25 (168)
475 PRK05986 cob(I)alamin adenolsy 89.3 1 2.2E-05 47.8 7.1 90 176-272 21-158 (191)
476 TIGR01040 V-ATPase_V1_B V-type 89.3 0.75 1.6E-05 55.5 6.8 27 176-202 140-166 (466)
477 PRK10078 ribose 1,5-bisphospho 89.2 0.28 6.1E-06 53.1 3.0 24 178-201 3-26 (186)
478 PRK13705 plasmid-partitioning 89.2 0.76 1.6E-05 55.8 7.0 27 176-202 105-132 (388)
479 PF03193 DUF258: Protein of un 89.2 0.52 1.1E-05 48.6 4.7 35 164-201 25-59 (161)
480 PRK14527 adenylate kinase; Pro 89.1 0.36 7.8E-06 52.5 3.8 27 176-202 5-31 (191)
481 PF08423 Rad51: Rad51; InterP 89.1 0.86 1.9E-05 51.8 7.0 37 177-213 38-78 (256)
482 PF06564 YhjQ: YhjQ protein; 89.1 0.52 1.1E-05 52.2 5.0 26 178-203 2-28 (243)
483 PRK09099 type III secretion sy 89.0 0.48 1E-05 57.6 5.0 26 176-201 162-187 (441)
484 cd03282 ABC_MSH4_euk MutS4 hom 89.0 0.56 1.2E-05 51.3 5.2 91 177-276 29-155 (204)
485 PRK13231 nitrogenase reductase 88.9 0.34 7.4E-06 55.9 3.7 26 178-203 3-28 (264)
486 KOG3347 Predicted nucleotide k 88.9 0.31 6.7E-06 48.1 2.7 25 177-201 7-31 (176)
487 PF01078 Mg_chelatase: Magnesi 88.8 0.77 1.7E-05 49.3 5.9 43 155-199 2-44 (206)
488 PF08477 Miro: Miro-like prote 88.8 0.35 7.6E-06 47.8 3.3 24 179-202 1-24 (119)
489 COG0467 RAD55 RecA-superfamily 88.8 0.76 1.6E-05 52.8 6.4 47 176-224 22-71 (260)
490 PRK05201 hslU ATP-dependent pr 88.8 0.67 1.4E-05 55.2 5.9 47 156-202 15-75 (443)
491 cd03285 ABC_MSH2_euk MutS2 hom 88.8 0.29 6.3E-06 54.4 2.8 154 176-339 29-219 (222)
492 cd01129 PulE-GspE PulE/GspE Th 88.7 0.98 2.1E-05 51.7 7.2 37 164-201 68-104 (264)
493 TIGR01026 fliI_yscN ATPase Fli 88.7 0.51 1.1E-05 57.7 5.0 26 176-201 162-187 (440)
494 cd01983 Fer4_NifH The Fer4_Nif 88.6 0.42 9.1E-06 45.1 3.5 25 179-203 1-25 (99)
495 COG1224 TIP49 DNA helicase TIP 88.6 0.8 1.7E-05 52.0 6.0 56 154-209 37-97 (450)
496 PRK15453 phosphoribulokinase; 88.6 0.45 9.8E-06 53.5 4.1 27 176-202 4-30 (290)
497 PRK13948 shikimate kinase; Pro 88.6 0.43 9.3E-06 50.9 3.9 26 176-201 9-34 (182)
498 PRK13946 shikimate kinase; Pro 88.6 0.36 7.9E-06 52.0 3.4 26 177-202 10-35 (184)
499 PRK06995 flhF flagellar biosyn 88.6 0.88 1.9E-05 56.0 6.9 28 177-204 256-283 (484)
500 COG3854 SpoIIIAA ncharacterize 88.6 1.6 3.5E-05 46.5 7.8 97 168-274 128-255 (308)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-78 Score=774.12 Aligned_cols=602 Identities=30% Similarity=0.480 Sum_probs=463.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHHHh--
Q 000302 12 ASKFAEVILGPIRREISYVFNYQSNVEELRTLDKELAYKREMVEQPVIQARRQGDEIYKRVEDWLNNVDDFTEDVVKS-- 89 (1698)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~~v~~wl~~v~~~~~d~~~~-- 89 (1698)
++|+.+. +.+++..+.++++.+..+++++..|+. ++++++...+ ....+..|.+.++++.|+..+.
T Consensus 9 ~~~~~~~----l~~~~~~~~~~~~~i~~Lk~~L~~l~~-------~l~d~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 9 VEKLDQL----LNRESECLDGKDNYILELKENLKALQS-------ALEDLDAKRD-DLERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred hhhHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHH-------HHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555553 356777777766656655555555555 4455554433 3567788888888887762221
Q ss_pred -Hh-CCcc------------ccccccccCCCC-ChHHHhHHHHHHHHHHHHHHHHhcCCCCCccccCCCC-CcccCCCCC
Q 000302 90 -IT-GGED------------EAKKRCFKGLCP-NLIKRYSLGKKAVKAAKEGADLLGTGNFGTVSFRPTV-ERTTPVSYT 153 (1698)
Q Consensus 90 -~~-~~~~------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 153 (1698)
+. .... ....-|+.+++. +...-+.+++++.++..+++.+..++.|+.+...+.+ ......+..
T Consensus 77 ~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~ 156 (889)
T KOG4658|consen 77 LFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQ 156 (889)
T ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCC
Confidence 11 0000 011123333333 4556677888999999999999888777755532211 111111222
Q ss_pred CcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHh-hcccCCEEEEh-------------------
Q 000302 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVI-EDKLFDKVVFV------------------- 213 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~~~------------------- 213 (1698)
.... +|.+..++++++.|.+++..++||+||||+||||||++++++.. ++.+||.++||
T Consensus 157 ~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l 235 (889)
T KOG4658|consen 157 SESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERL 235 (889)
T ss_pred cccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHh
Confidence 2223 99999999999999988779999999999999999999999988 88999999999
Q ss_pred -------------HHHHHHHHHHHccCcEEEEEcCcccccccccccCcccccccccCCCCCCeEEEEEeCchhhhhcccC
Q 000302 214 -------------ERAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMN 280 (1698)
Q Consensus 214 -------------~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~~~~ 280 (1698)
..+..+.+.|+ +|||+|||||||+..+|+.++.|+|. ..+||||++|||++.||...|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~-------~~~g~KvvlTTRs~~V~~~~m~ 307 (889)
T KOG4658|consen 236 GLLDEEWEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPS-------RENGSKVVLTTRSEEVCGRAMG 307 (889)
T ss_pred ccCCcccchhhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCC-------ccCCeEEEEEeccHhhhhcccc
Confidence 12334555555 79999999999999999999999998 7899999999999999996699
Q ss_pred CcceEEccCCCHHHHHHHHHHHhCCC--CCCCchHHHHHHHHHHhCCChHHHHHHHHHHhcCCchh-HHHHHHHHHcccc
Q 000302 281 SQKFFLIEVLSYEEAWCLFEKIVGDS--AKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYV-WNDSLERLRNSTS 357 (1698)
Q Consensus 281 ~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~-w~~~~~~l~~~~~ 357 (1698)
+...+++++|+.+|||.||++.||.. ...+.++++|++|+++|+|+|||+.++|++|+.|.... |+++.+.+.+...
T Consensus 308 ~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~ 387 (889)
T KOG4658|consen 308 VDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLA 387 (889)
T ss_pred CCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccccc
Confidence 99999999999999999999999853 34456899999999999999999999999999998775 9999999988866
Q ss_pred cccCcchHHHHHHHHHHHhcCCchHHHHHHHHhcccCCCCCCCHHHHHHHHhhcCcccccccHHHHHHHHHHHHHHHHhc
Q 000302 358 RQIHGMEENVYSSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAARNRVYTLVDNLKAS 437 (1698)
Q Consensus 358 ~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~ 437 (1698)
.+..++.+.+++++++|||.||+ ++|.||+|||+||||+.|+++.|+.+|+||||+.+....+.+++.+++|+++|++|
T Consensus 388 ~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~ 466 (889)
T KOG4658|consen 388 ADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRA 466 (889)
T ss_pred CCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHH
Confidence 66677888999999999999995 49999999999999999999999999999999988666777889999999999999
Q ss_pred cccccCCC----CeEEEchHHHHHHHHHhc-----ccceEeeccCCccccCCc----CCeEEEECCCCCCCCCCcccCCC
Q 000302 438 SLLLDGDK----DEVKLHDIIYAVAVSIAR-----DEFMFNIQSKDELKDKTQ----KDSIAISLPNRDIDELPERLECP 504 (1698)
Q Consensus 438 ~ll~~~~~----~~~~mhdlv~~~a~~~~~-----~~~~~~~~~~~~~~~~~~----~~~~~lsl~~~~~~~l~~~~~~~ 504 (1698)
+|++..+. .+|+|||+|||+|.++|+ +|+.+ +..+......+. ..+|+++++++.+..++....++
T Consensus 467 ~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~i-v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~ 545 (889)
T KOG4658|consen 467 SLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQI-VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENP 545 (889)
T ss_pred HHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceE-EECCcCccccccccchhheeEEEEeccchhhccCCCCCC
Confidence 99988763 899999999999999999 55533 332211111111 34699999999999999999999
Q ss_pred CeEEEEEecccCCCCccChhhhccCCceeEEEecCCC-cccCCccccCCCcccEEEccCccCCCccccccccccceeecC
Q 000302 505 KLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTC-FLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFR 583 (1698)
Q Consensus 505 ~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~-i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~Ls 583 (1698)
+|++|.+..+......++..||..|+.||||||++|. +.+||++|+.|.|||||+ ++
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~----------------------L~ 603 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD----------------------LS 603 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc----------------------cc
Confidence 9999999998333778899999999999999999753 456777666655555555 55
Q ss_pred CCCCCccchHhhccccccEecccCcccccccCchhhccCccCceecccCcccccccccCCCccchhhhCCCCCCCEEEEE
Q 000302 584 NSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIH 663 (1698)
Q Consensus 584 ~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~ 663 (1698)
++.+..||.++++|..|++||+..+..+..+ ++++..|++||+|.+..... ..+...+.++.+|.+|+.|.+.
T Consensus 604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~------~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 604 DTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSAL------SNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred CCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeecccc------ccchhhHHhhhcccchhhheee
Confidence 5567788888888888888888877655555 34466688888888766542 2234556777777777777765
Q ss_pred ec
Q 000302 664 IR 665 (1698)
Q Consensus 664 ~~ 665 (1698)
..
T Consensus 677 ~~ 678 (889)
T KOG4658|consen 677 IS 678 (889)
T ss_pred cc
Confidence 43
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.7e-59 Score=635.59 Aligned_cols=635 Identities=22% Similarity=0.329 Sum_probs=407.6
Q ss_pred CcccccchHHHHHHHHHHHh--cCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHH----------------
Q 000302 154 AYEQFDSRMKIFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVER---------------- 215 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~---------------- 215 (1698)
+..+++||+..++++..+|. .+++++|+||||||+||||||+++|++.. ..|+..+|++.
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence 45679999999999998886 45789999999999999999999999875 45888776510
Q ss_pred --------------------------HHHHHHHHHccCcEEEEEcCcccccccccccCcccccccccCCCCCCeEEEEEe
Q 000302 216 --------------------------AEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTS 269 (1698)
Q Consensus 216 --------------------------~~~l~~~l~~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~g~kilvTt 269 (1698)
...++++++ +||+||||||||+..+|+.+...... .+.|++|||||
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~-------~~~GsrIIiTT 331 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQW-------FGSGSRIIVIT 331 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCcc-------CCCCcEEEEEe
Confidence 023445555 69999999999999999988765443 57899999999
Q ss_pred CchhhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCC-CCCchHHHHHHHHHHhCCChHHHHHHHHHHhcCCchhHHHH
Q 000302 270 RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSA-KASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWNDS 348 (1698)
Q Consensus 270 R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~w~~~ 348 (1698)
|+++++. .++..++|+++.|+++|||+||+++|+... .++++.+++++|+++|+|+|||++++|++|+++...+|+++
T Consensus 332 rd~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~ 410 (1153)
T PLN03210 332 KDKHFLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDM 410 (1153)
T ss_pred CcHHHHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 9999997 467788999999999999999999997433 34567899999999999999999999999999987779999
Q ss_pred HHHHHcccccccCcchHHHHHHHHHHHhcCCchHHHHHHHHhcccCCCCCCCHHHHHHHHhhcCcccccccHHHHHHHHH
Q 000302 349 LERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAARNRVY 428 (1698)
Q Consensus 349 ~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~ 428 (1698)
+++++... +..+..+|++||++|+++..|.||+++|.|+.+..+ +.+..|++.+.+.. .
T Consensus 411 l~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~ 469 (1153)
T PLN03210 411 LPRLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------N 469 (1153)
T ss_pred HHHHHhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------h
Confidence 99887533 346899999999999875469999999999977654 45677887765432 1
Q ss_pred HHHHHHHhccccccCCCCeEEEchHHHHHHHHHhcccceEeeccCCccccCC-------------cCCeEEEECCCCCCC
Q 000302 429 TLVDNLKASSLLLDGDKDEVKLHDIIYAVAVSIARDEFMFNIQSKDELKDKT-------------QKDSIAISLPNRDID 495 (1698)
Q Consensus 429 ~~~~~L~~~~ll~~~~~~~~~mhdlv~~~a~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~lsl~~~~~~ 495 (1698)
..++.|+++|||+... .+++|||++|++|+.+++++.- ..+.+..-|. ...++++++..+.+.
T Consensus 470 ~~l~~L~~ksLi~~~~-~~~~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRE-DIVEMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred hChHHHHhcCCEEEcC-CeEEhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 1288899999997654 6799999999999999987531 1011111111 123344554433322
Q ss_pred CCCcccCCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcc-------cCCccccCCC-cccEEEccCccCCC
Q 000302 496 ELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFL-------SLPSSLVCLI-SLRTLSLEGCQVGD 567 (1698)
Q Consensus 496 ~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~-------~lp~~i~~L~-~Lr~L~L~~~~l~~ 567 (1698)
+ ..+....|.+|++|+.|.+..+... .+|..|..+. +||+|++.++.+..
T Consensus 546 ~----------------------~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~ 603 (1153)
T PLN03210 546 E----------------------LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC 603 (1153)
T ss_pred e----------------------eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC
Confidence 2 2234445566666666666443211 2455454443 46666666666554
Q ss_pred ccccccccccceeecCCCCCCccchHhhccccccEecccCcccccccCchhhccCccCceecccCcccccccccCCCccc
Q 000302 568 VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNAS 647 (1698)
Q Consensus 568 ~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 647 (1698)
++....+.+|++|+++++.+..+|.++..+++|+.|++++|..++.+|. ++.+++|++|++.+|... ...
T Consensus 604 lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L--------~~l 673 (1153)
T PLN03210 604 MPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL--------VEL 673 (1153)
T ss_pred CCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc--------ccc
Confidence 3222245666666666666666666666666666666666555555553 556666666666655432 223
Q ss_pred hhhhCCCCCCCEEEEEec-cccccchhhhhhccceeEEEEeccccccccccccceeeecccCchhhhhhhHHHhhcccce
Q 000302 648 LVELKGLSKLTTLEIHIR-DARIMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTED 726 (1698)
Q Consensus 648 ~~~L~~L~~L~~L~l~~~-~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~l~~ 726 (1698)
+..++++++|+.|+++.+ .+..+|..+. +++|+.
T Consensus 674 p~si~~L~~L~~L~L~~c~~L~~Lp~~i~---------------------------------------------l~sL~~ 708 (1153)
T PLN03210 674 PSSIQYLNKLEDLDMSRCENLEILPTGIN---------------------------------------------LKSLYR 708 (1153)
T ss_pred chhhhccCCCCEEeCCCCCCcCccCCcCC---------------------------------------------CCCCCE
Confidence 344555566666655532 2222222111 122333
Q ss_pred eEeccccCccccccccCccccccCCcEEEeccccceeeeccCcCccccCCCCcccEeecccccccccccccc-C--cCCc
Q 000302 727 LYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNR-L--HEDE 803 (1698)
Q Consensus 727 L~l~~~~~~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~l~~i~~~~-~--~~~~ 803 (1698)
|.+.+|...... + ....+|+.|++.++. +..+|.. ..+++|++|.+.++....-+.... . ....
T Consensus 709 L~Lsgc~~L~~~-p-----~~~~nL~~L~L~~n~-i~~lP~~------~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~ 775 (1153)
T PLN03210 709 LNLSGCSRLKSF-P-----DISTNISWLDLDETA-IEEFPSN------LRLENLDELILCEMKSEKLWERVQPLTPLMTM 775 (1153)
T ss_pred EeCCCCCCcccc-c-----cccCCcCeeecCCCc-ccccccc------ccccccccccccccchhhccccccccchhhhh
Confidence 444433322211 1 123567777777543 4555542 246778878777654321110000 0 0112
Q ss_pred cCCCccEEEEeecCCCCCCCcHHHHhhcccCceEEEccccCcchhhcccccceeeeccccCccccCCCCCceecccccee
Q 000302 804 SFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSLEEL 883 (1698)
Q Consensus 804 ~~~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L 883 (1698)
.+++|+.|.+++|+.+..+| ..+.++++|+.|++++|..++.++. . ..+++|+.|
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP--~si~~L~~L~~L~Ls~C~~L~~LP~----------------------~-~~L~sL~~L 830 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELP--SSIQNLHKLEHLEIENCINLETLPT----------------------G-INLESLESL 830 (1153)
T ss_pred ccccchheeCCCCCCccccC--hhhhCCCCCCEEECCCCCCcCeeCC----------------------C-CCccccCEE
Confidence 24567777777777777766 3456677777777777766655541 0 125666666
Q ss_pred eccccccccccCCCCCcCCCccCCccEEEeccccCccccccHHHHHhhhccceeEeeccccccccc
Q 000302 884 DLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEGVV 949 (1698)
Q Consensus 884 ~L~~~~~l~~i~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~ 949 (1698)
++++|..+..+ + ....+|+.|++++ +.++.++. .+..+++|+.|++++|++++.++
T Consensus 831 ~Ls~c~~L~~~-p------~~~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 831 DLSGCSRLRTF-P------DISTNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred ECCCCCccccc-c------ccccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCccC
Confidence 66666555422 1 1224566666666 45554321 34555556666666555555443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.4e-37 Score=362.25 Aligned_cols=246 Identities=35% Similarity=0.581 Sum_probs=197.0
Q ss_pred hHHHHHHHHHHHhc--CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-------------------------
Q 000302 161 RMKIFQNIMEVLKD--TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV------------------------- 213 (1698)
Q Consensus 161 r~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~------------------------- 213 (1698)
|+.++++|.++|.+ ++.++|+|+||||+||||||++++++...+++|+.++|+
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999997 789999999999999999999999997788899999999
Q ss_pred --------HHHHHHHHHHHccCcEEEEEcCcccccccccccCcccccccccCCCCCCeEEEEEeCchhhhhcccCCcceE
Q 000302 214 --------ERAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFF 285 (1698)
Q Consensus 214 --------~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~~~~~~~~~ 285 (1698)
.....+++.+. ++++||||||||+...|+.+..+++. ...|++||||||+..++.........+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~-------~~~~~kilvTTR~~~v~~~~~~~~~~~ 152 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPS-------FSSGSKILVTTRDRSVAGSLGGTDKVI 152 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HC-------HHSS-EEEEEESCGGGGTTHHSCEEEE
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccc-------ccccccccccccccccccccccccccc
Confidence 12345566665 68999999999999999999887776 677999999999999987322236899
Q ss_pred EccCCCHHHHHHHHHHHhCCCC--CCCchHHHHHHHHHHhCCChHHHHHHHHHHhcCC-chhHHHHHHHHHcccccccCc
Q 000302 286 LIEVLSYEEAWCLFEKIVGDSA--KASDFRVIADEIVRRCGGLPVAIKTIANALKNKR-LYVWNDSLERLRNSTSRQIHG 362 (1698)
Q Consensus 286 ~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~-~~~w~~~~~~l~~~~~~~~~~ 362 (1698)
++++|+++||++||++.++... ..+..++++++|+++|+|+||||.++|++|+.+. ..+|+++++.+...... ..+
T Consensus 153 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~ 231 (287)
T PF00931_consen 153 ELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRD 231 (287)
T ss_dssp ECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 9999999999999999997433 4456678899999999999999999999996654 34499999887766532 233
Q ss_pred chHHHHHHHHHHHhcCCchHHHHHHHHhcccCCCCCCCHHHHHHHHhhcCcccc
Q 000302 363 MEENVYSSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSN 416 (1698)
Q Consensus 363 ~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~i~~~~li~~w~~~g~~~~ 416 (1698)
....++.++.+||+.||++ +|+||+|||+||+++.|+++.++++|+++|++..
T Consensus 232 ~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 232 YDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp SCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 5677999999999999997 7999999999999999999999999999999875
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.7e-29 Score=346.42 Aligned_cols=363 Identities=19% Similarity=0.215 Sum_probs=205.4
Q ss_pred CeEEEECCCCCCCCC-Cc-ccCCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcc-cCCccccCCCcccEEE
Q 000302 483 DSIAISLPNRDIDEL-PE-RLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFL-SLPSSLVCLISLRTLS 559 (1698)
Q Consensus 483 ~~~~lsl~~~~~~~l-~~-~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~-~lp~~i~~L~~Lr~L~ 559 (1698)
.++.+++.++.+... +. ...+++|+.|.+++| .-...+|..+|..+++||+|+|++|.+. .+|. +.+.+|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 467777777766543 22 235778888888776 2334677777777888888888887775 3453 4577788888
Q ss_pred ccCccCC--CccccccccccceeecCCCCCC-ccchHhhccccccEecccCcccccccCchhhccCccCceecccCcccc
Q 000302 560 LEGCQVG--DVAIVGQLKKLEILSFRNSDIQ-QLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQ 636 (1698)
Q Consensus 560 L~~~~l~--~~~~i~~L~~L~~L~Ls~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 636 (1698)
|++|.+. .|..++++.+|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence 8888765 2567788888888888887664 67777888888888888877444455655 778888888888777663
Q ss_pred cccccCCCccchhhhCCCCCCCEEEEEecccc-ccchhhhhhccceeEEEEeccccccccccccceeeecccCchhhhhh
Q 000302 637 WEKVEGGSNASLVELKGLSKLTTLEIHIRDAR-IMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQ 715 (1698)
Q Consensus 637 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~ 715 (1698)
...+..++++++|+.|++..|... .+|..+
T Consensus 226 --------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----------------------------------------- 256 (968)
T PLN00113 226 --------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL----------------------------------------- 256 (968)
T ss_pred --------CcCChhHhcCCCCCEEECcCceeccccChhH-----------------------------------------
Confidence 345566777778888877766543 122111
Q ss_pred hHHHhhcccceeEeccccCccccccccCccccccCCcEEEeccccceeeeccCcCccccCCCCcccEeeccccccccccc
Q 000302 716 GMKMFLKRTEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKIC 795 (1698)
Q Consensus 716 ~~~~~~~~l~~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~l~~i~ 795 (1698)
..+++|+.|.+.++.........+. .+++|++|+++++.....++.. ...+++|+.|++.++.-...++
T Consensus 257 ---~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~~p~~-----~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 257 ---GNLKNLQYLFLYQNKLSGPIPPSIF---SLQKLISLDLSDNSLSGEIPEL-----VIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred ---hCCCCCCEEECcCCeeeccCchhHh---hccCcCEEECcCCeeccCCChh-----HcCCCCCcEEECCCCccCCcCC
Confidence 0122344444444332222222332 5666666766654433333332 3345566666665543221221
Q ss_pred cccCcCCccCCCccEEEEeecCCCCCCCcHHHHhhcccCceEEEccccCcchhhcccccceeeeccccCccccCCCCCce
Q 000302 796 HNRLHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKV 875 (1698)
Q Consensus 796 ~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~ 875 (1698)
. ....+++|+.|.+.+|.-...+| ..+..+++|+.|++++|.....++ ....
T Consensus 326 ~----~~~~l~~L~~L~L~~n~l~~~~p--~~l~~~~~L~~L~Ls~n~l~~~~p----------------------~~~~ 377 (968)
T PLN00113 326 V----ALTSLPRLQVLQLWSNKFSGEIP--KNLGKHNNLTVLDLSTNNLTGEIP----------------------EGLC 377 (968)
T ss_pred h----hHhcCCCCCEEECcCCCCcCcCC--hHHhCCCCCcEEECCCCeeEeeCC----------------------hhHh
Confidence 1 23345666666666654333343 234555566666665543221111 2222
Q ss_pred eccccceeeccccccccccCCCCCcCCCccCCccEEEeccccCccccccHHHHHhhhccceeEeeccc
Q 000302 876 IFPSLEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCW 943 (1698)
Q Consensus 876 ~~~~L~~L~L~~~~~l~~i~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~ 943 (1698)
.+++|+.|+++++ ++....+..+ ..+++|+.|++++|. +....| ..+..+++|+.|+++++.
T Consensus 378 ~~~~L~~L~l~~n-~l~~~~p~~~---~~~~~L~~L~L~~n~-l~~~~p-~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 378 SSGNLFKLILFSN-SLEGEIPKSL---GACRSLRRVRLQDNS-FSGELP-SEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CcCCCCEEECcCC-EecccCCHHH---hCCCCCCEEECcCCE-eeeECC-hhHhcCCCCCEEECcCCc
Confidence 3455666666655 3333323222 345556666666532 332222 234555566666665544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.2e-28 Score=340.18 Aligned_cols=517 Identities=16% Similarity=0.122 Sum_probs=374.3
Q ss_pred CCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcc-cCCcccc-CCCcccEEEccCccCCCccccccccccceee
Q 000302 504 PKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFL-SLPSSLV-CLISLRTLSLEGCQVGDVAIVGQLKKLEILS 581 (1698)
Q Consensus 504 ~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~-~lp~~i~-~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~ 581 (1698)
.+++.|.++++ .........|..+++|++|+|++|.+. .+|..+. .+.+||+|+|++|.+......+.+.+|++|+
T Consensus 69 ~~v~~L~L~~~--~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGK--NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCC--CccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEE
Confidence 47899999887 233233456789999999999999997 6887755 8999999999999987543447799999999
Q ss_pred cCCCCCC-ccchHhhccccccEecccCcccccccCchhhccCccCceecccCcccccccccCCCccchhhhCCCCCCCEE
Q 000302 582 FRNSDIQ-QLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTL 660 (1698)
Q Consensus 582 Ls~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 660 (1698)
|++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+. ...+..++++++|+.|
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~--------~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLV--------GQIPRELGQMKSLKWI 217 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCc--------CcCChHHcCcCCccEE
Confidence 9999887 78999999999999999999545567776 899999999999998774 4567789999999999
Q ss_pred EEEecccc-ccchhhhhhccceeEEEEeccccccccccccceeeecccCchhhhhhhHHHhhcccceeEeccccCccccc
Q 000302 661 EIHIRDAR-IMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLKGFQNVV 739 (1698)
Q Consensus 661 ~l~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~l 739 (1698)
+++.|... .+|..+ ..+++|+.|++.++.......
T Consensus 218 ~L~~n~l~~~~p~~l--------------------------------------------~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 218 YLGYNNLSGEIPYEI--------------------------------------------GGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred ECcCCccCCcCChhH--------------------------------------------hcCCCCCEEECcCceeccccC
Confidence 99887654 333332 112344555555543332333
Q ss_pred cccCccccccCCcEEEeccccceeeeccCcCccccCCCCcccEeeccccccccccccccCcCCccCCCccEEEEeecCCC
Q 000302 740 HELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNRLHEDESFSNLRIIKVGECDKL 819 (1698)
Q Consensus 740 ~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~C~~L 819 (1698)
..+. .+++|+.|++.++.....++.. ...+++|+.|++.++.-...++. ....+++|+.|++.+|.-.
T Consensus 254 ~~l~---~l~~L~~L~L~~n~l~~~~p~~-----l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 254 SSLG---NLKNLQYLFLYQNKLSGPIPPS-----IFSLQKLISLDLSDNSLSGEIPE----LVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred hhHh---CCCCCCEEECcCCeeeccCchh-----HhhccCcCEEECcCCeeccCCCh----hHcCCCCCcEEECCCCccC
Confidence 3444 8899999999976644445444 55678999999998643223322 2356889999999997655
Q ss_pred CCCCcHHHHhhcccCceEEEccccCcchhhcccccceeeeccccCccccCCCCCceeccccceeeccccccccccCCCCC
Q 000302 820 RHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSLEELDLYSLITIEKLWPKQF 899 (1698)
Q Consensus 820 ~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~ 899 (1698)
..+| ..+..+++|+.|++++|.....++ .....+++|+.|+++++ ++....+..+
T Consensus 322 ~~~~--~~~~~l~~L~~L~L~~n~l~~~~p----------------------~~l~~~~~L~~L~Ls~n-~l~~~~p~~~ 376 (968)
T PLN00113 322 GKIP--VALTSLPRLQVLQLWSNKFSGEIP----------------------KNLGKHNNLTVLDLSTN-NLTGEIPEGL 376 (968)
T ss_pred CcCC--hhHhcCCCCCEEECcCCCCcCcCC----------------------hHHhCCCCCcEEECCCC-eeEeeCChhH
Confidence 5555 456789999999999875433332 33455889999999998 6665544443
Q ss_pred cCCCccCCccEEEeccccCccccccHHHHHhhhccceeEeecccccccccccCCcccccccccceeeeccccceeeccCC
Q 000302 900 QGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEGVVETNSTESRRDEGRLIEIVFPKLLYLRLIDL 979 (1698)
Q Consensus 900 ~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 979 (1698)
..+++|+.|++.+| ++....| ..+..+++|+.|++++|.....++.... .+++|+.|+++++
T Consensus 377 ---~~~~~L~~L~l~~n-~l~~~~p-~~~~~~~~L~~L~L~~n~l~~~~p~~~~-------------~l~~L~~L~Ls~N 438 (968)
T PLN00113 377 ---CSSGNLFKLILFSN-SLEGEIP-KSLGACRSLRRVRLQDNSFSGELPSEFT-------------KLPLVYFLDISNN 438 (968)
T ss_pred ---hCcCCCCEEECcCC-EecccCC-HHHhCCCCCCEEECcCCEeeeECChhHh-------------cCCCCCEEECcCC
Confidence 56788999999994 5554444 3577899999999999875544433221 2788999999887
Q ss_pred CccccccccccccccCCccEEEeccCCCcceeeecccccccccCCCCCcccccccCCCcceeeeccccchhHHhhccCcc
Q 000302 980 PKLMGFSIGIHSVEFPSLLELQIDDCPNMKRFISISSSQDNIHANPQPLFDEKVGTPNLMTLRVSYCHNIEEIIRHVGED 1059 (1698)
Q Consensus 980 ~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 1059 (1698)
.-...++... ..+++|+.|++++|.-...+|. ....++|+.|++++|.....++...
T Consensus 439 ~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~------------------~~~~~~L~~L~ls~n~l~~~~~~~~--- 495 (968)
T PLN00113 439 NLQGRINSRK--WDMPSLQMLSLARNKFFGGLPD------------------SFGSKRLENLDLSRNQFSGAVPRKL--- 495 (968)
T ss_pred cccCccChhh--ccCCCCcEEECcCceeeeecCc------------------ccccccceEEECcCCccCCccChhh---
Confidence 6443333222 2488999999999975544422 1235789999999987554444333
Q ss_pred ccccccccccccEEeccCCCCcceeecCCccccCCCccEEeeccCcCccccccccccccccceeeeeccccccccccccc
Q 000302 1060 VKENRITFNQLKNLELDDLPSLTSFCLGNCTLEFPSLERVFVRNCRNMKTFSEGVVCAPKLKKVQVTKKEQEEDEWCSCW 1139 (1698)
Q Consensus 1060 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 1139 (1698)
..+++|+.|++++|.-...++.. ...+++|+.|++++|......|..+..+++|+.|+++++. .
T Consensus 496 -----~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~---------l 559 (968)
T PLN00113 496 -----GSLSELMQLKLSENKLSGEIPDE--LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ---------L 559 (968)
T ss_pred -----hhhhccCEEECcCCcceeeCChH--HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc---------c
Confidence 34788999999998654444322 3468899999999998888888888899999999998642 1
Q ss_pred cCCcchhhhhhhhccccccccccccCCCCcccccc
Q 000302 1140 EGNLNSTIQKLFVVGFHDIKDLKLSQFPHLKEIWH 1174 (1698)
Q Consensus 1140 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~ 1174 (1698)
.|..+ ..+..+++|+.|++++++-...++.
T Consensus 560 ~~~~p-----~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 560 SGEIP-----KNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cccCC-----hhHhcCcccCEEeccCCcceeeCCC
Confidence 22222 2356789999999999985555543
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=3.1e-19 Score=245.11 Aligned_cols=344 Identities=18% Similarity=0.277 Sum_probs=230.7
Q ss_pred CCCCeEEEEEeccc-----CCCCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEccCccCCC-cccccccc
Q 000302 502 ECPKLSLFLLFAKY-----DSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD-VAIVGQLK 575 (1698)
Q Consensus 502 ~~~~Lr~L~l~~~~-----~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~ 575 (1698)
.+++|+.|.+..+. .....+|+.+..-...||.|++.++.+..+|..| ...+|+.|++++|.+.. +..+..+.
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 45677777765431 1123456555444466888888888888888776 46788888888887775 46677788
Q ss_pred ccceeecCCC-CCCccchHhhccccccEecccCcccccccCchhhccCccCceecccCcccccccccCCCccchhhhCCC
Q 000302 576 KLEILSFRNS-DIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGL 654 (1698)
Q Consensus 576 ~L~~L~Ls~~-~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 654 (1698)
+|++|+|+++ .+..+|. ++.+++|++|++++|..+..+|.. +++|++|+.|++++|... ...+..+ ++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L--------~~Lp~~i-~l 703 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENL--------EILPTGI-NL 703 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCc--------CccCCcC-CC
Confidence 8888888776 4667774 777888888888888777778776 788888888888776432 1112222 56
Q ss_pred CCCCEEEEEeccc-cccchhhhhhccceeEEEEeccccccccccccceeeecccCchhhhhhhHHHhhcccceeEecccc
Q 000302 655 SKLTTLEIHIRDA-RIMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTEDLYLHDLK 733 (1698)
Q Consensus 655 ~~L~~L~l~~~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~l~~L~l~~~~ 733 (1698)
++|+.|+++++.. ..+|. ...+++.|++.+..
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~-----------------------------------------------~~~nL~~L~L~~n~ 736 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD-----------------------------------------------ISTNISWLDLDETA 736 (1153)
T ss_pred CCCCEEeCCCCCCcccccc-----------------------------------------------ccCCcCeeecCCCc
Confidence 7777777765421 11111 01223334443322
Q ss_pred CccccccccCccccccCCcEEEeccccceeeeccCcC---ccccCCCCcccEeeccccccccccccccCcCCccCCCccE
Q 000302 734 GFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIG---QVCCKVFPLLESLSLCRLFNLEKICHNRLHEDESFSNLRI 810 (1698)
Q Consensus 734 ~~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~---~~~~~~fp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~L~~ 810 (1698)
. .. +|. ...+++|++|.+.++.... +..... ......+++|+.|++.+++.+..++. ..+.+++|+.
T Consensus 737 i-~~-lP~---~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~----si~~L~~L~~ 806 (1153)
T PLN03210 737 I-EE-FPS---NLRLENLDELILCEMKSEK-LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS----SIQNLHKLEH 806 (1153)
T ss_pred c-cc-ccc---cccccccccccccccchhh-ccccccccchhhhhccccchheeCCCCCCccccCh----hhhCCCCCCE
Confidence 1 11 111 1146677777776533211 111000 00023467999999999988888765 4578999999
Q ss_pred EEEeecCCCCCCCcHHHHhhcccCceEEEccccCcchhhcccccceeeeccccCccccCCCCCceeccccceeecccccc
Q 000302 811 IKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSLEELDLYSLIT 890 (1698)
Q Consensus 811 L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 890 (1698)
|.+++|++++.+|.. ..+++|+.|++++|..+..++. ..++|+.|+|+++ .
T Consensus 807 L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~-------------------------~~~nL~~L~Ls~n-~ 857 (1153)
T PLN03210 807 LEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPD-------------------------ISTNISDLNLSRT-G 857 (1153)
T ss_pred EECCCCCCcCeeCCC---CCccccCEEECCCCCccccccc-------------------------cccccCEeECCCC-C
Confidence 999999999999853 2689999999999988765541 1468999999997 6
Q ss_pred ccccCCCCCcCCCccCCccEEEeccccCccccccHHHHHhhhccceeEeeccccccccc
Q 000302 891 IEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEGVV 949 (1698)
Q Consensus 891 l~~i~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~ 949 (1698)
++.+ |.. +..+++|+.|++.+|++|+.++. ....+++|+.+++++|.++..+.
T Consensus 858 i~~i-P~s---i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 858 IEEV-PWW---IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CccC-hHH---HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCccccccc
Confidence 6644 222 36789999999999999998654 45678999999999999887653
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=9.6e-20 Score=207.21 Aligned_cols=365 Identities=17% Similarity=0.211 Sum_probs=250.2
Q ss_pred eEEEECCCCCCCCCCc----ccCCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEE
Q 000302 484 SIAISLPNRDIDELPE----RLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLS 559 (1698)
Q Consensus 484 ~~~lsl~~~~~~~l~~----~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~ 559 (1698)
.+-+...++.++.+.. ..--+..++|++++| ....+...+|.++.+|+.+.+.+|.++.+|.......||..|+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN--kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN--KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLD 131 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeecccc--ccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEe
Confidence 3555555555554321 223456788999888 6677777888999999999999999999998777788899999
Q ss_pred ccCccCCCc--cccccccccceeecCCCCCCccch-HhhccccccEecccCcccccccCchhhccCccCceecccCcccc
Q 000302 560 LEGCQVGDV--AIVGQLKKLEILSFRNSDIQQLPR-EIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQ 636 (1698)
Q Consensus 560 L~~~~l~~~--~~i~~L~~L~~L~Ls~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 636 (1698)
|.+|.|..+ ..+.-+..||.||||.|.|.++|. ++..=.++++|+|++| .++.+..+.+..|.+|-+|.++.|.+.
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCccc
Confidence 999998876 678888999999999999988874 4666678999999999 688888888889999999999988874
Q ss_pred cccccCCCccchhhhCCCCCCCEEEEEeccccccchhh--hhhccceeEEEEeccccccccccccceeeecccCchhhhh
Q 000302 637 WEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQDL--ISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLG 714 (1698)
Q Consensus 637 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~ 714 (1698)
.-.+..+++|++|+.|++..|.+....... .+..|+.+++..+.+ .+| .
T Consensus 211 --------tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I---------------~kL------~ 261 (873)
T KOG4194|consen 211 --------TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI---------------SKL------D 261 (873)
T ss_pred --------ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc---------------ccc------c
Confidence 455677888999999998877654321110 122222222111100 000 0
Q ss_pred hhHHHhhcccceeEeccccCccccccccCccccccCCcEEEeccccceeeeccCcCccccCCCCcccEeecccccccccc
Q 000302 715 QGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKI 794 (1698)
Q Consensus 715 ~~~~~~~~~l~~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~l~~i 794 (1698)
+| . +-++.++++|++.. +.+..+.... ..++.+|+.|++++ +.++.+
T Consensus 262 DG------------------------~---Fy~l~kme~l~L~~-N~l~~vn~g~----lfgLt~L~~L~lS~-NaI~ri 308 (873)
T KOG4194|consen 262 DG------------------------A---FYGLEKMEHLNLET-NRLQAVNEGW----LFGLTSLEQLDLSY-NAIQRI 308 (873)
T ss_pred Cc------------------------c---eeeecccceeeccc-chhhhhhccc----ccccchhhhhccch-hhhhee
Confidence 11 1 12566667777763 3344333221 44566777777766 334443
Q ss_pred ccccCcCCccCCCccEEEEeecCCCCCCCcHHHHhhcccCceEEEccccCcchhhcccccceeeeccccCccccCCCCCc
Q 000302 795 CHNRLHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEK 874 (1698)
Q Consensus 795 ~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~ 874 (1698)
-.. .-...++|+.|++++ +.+..+++ ..+..|..|++|.++++ .+..+- ...+
T Consensus 309 h~d---~WsftqkL~~LdLs~-N~i~~l~~-~sf~~L~~Le~LnLs~N-si~~l~---------------------e~af 361 (873)
T KOG4194|consen 309 HID---SWSFTQKLKELDLSS-NRITRLDE-GSFRVLSQLEELNLSHN-SIDHLA---------------------EGAF 361 (873)
T ss_pred ecc---hhhhcccceeEeccc-cccccCCh-hHHHHHHHhhhhccccc-chHHHH---------------------hhHH
Confidence 211 112347788888887 56777765 46678888999998873 344333 1344
Q ss_pred eeccccceeeccccccccccCCCCCcCCCccCCccEEEeccccCccccccHHHHHhhhccceeEeeccc
Q 000302 875 VIFPSLEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCW 943 (1698)
Q Consensus 875 ~~~~~L~~L~L~~~~~l~~i~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~ 943 (1698)
..+.+|++|+|+++ .+.-..++.-.....+++|++|.+.+ ++++.+ +...+..++.|++|++.+..
T Consensus 362 ~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I-~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSI-PKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred HHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecC-ceeeec-chhhhccCcccceecCCCCc
Confidence 55889999999998 66644444433456799999999999 899985 44578899999999999855
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=3.1e-20 Score=223.37 Aligned_cols=464 Identities=19% Similarity=0.247 Sum_probs=276.8
Q ss_pred CCCCCCCCCccc-CCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEccCccCCC-
Q 000302 490 PNRDIDELPERL-ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD- 567 (1698)
Q Consensus 490 ~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~- 567 (1698)
++...+-+|..+ ....+..|.+..| .....|-.+..+.-+|++||+++|.+..+|..+..+.+|+.|+++.|.|..
T Consensus 6 s~~~l~~ip~~i~~~~~~~~ln~~~N--~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~v 83 (1081)
T KOG0618|consen 6 SDEQLELIPEQILNNEALQILNLRRN--SLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSV 83 (1081)
T ss_pred ccccCcccchhhccHHHHHhhhcccc--ccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhC
Confidence 334444444433 2223555555555 444555566666666999999999999999999999999999999999885
Q ss_pred ccccccccccceeecCCCCCCccchHhhccccccEecccCcccccccCchhhccCccCceecccCccccccccc------
Q 000302 568 VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVE------ 641 (1698)
Q Consensus 568 ~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~------ 641 (1698)
|.+++++.+|++|.|.+|.+..+|.++..+.+|++|+++.| .+..+|.- +..++.++.+..++| .+....+
T Consensus 84 p~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~-i~~lt~~~~~~~s~N-~~~~~lg~~~ik~ 160 (1081)
T KOG0618|consen 84 PSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN-HFGPIPLV-IEVLTAEEELAASNN-EKIQRLGQTSIKK 160 (1081)
T ss_pred chhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh-ccCCCchh-HHhhhHHHHHhhhcc-hhhhhhccccchh
Confidence 68889999999999999999999999999999999999998 57778875 788888888888877 2100000
Q ss_pred ------CCCccchhhhCCCCCCCEEEEEeccccccchhh-hhhccceeEEEEeccccccccccccceeeecccCchhhhh
Q 000302 642 ------GGSNASLVELKGLSKLTTLEIHIRDARIMPQDL-ISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLG 714 (1698)
Q Consensus 642 ------~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~ 714 (1698)
.-....+.++..+++ .|++..|.+. ..++ ...+|+.+....+.. ..+.
T Consensus 161 ~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~l----------s~l~----------- 215 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQL----------SELE----------- 215 (1081)
T ss_pred hhhhhhhcccchhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhccc----------ceEE-----------
Confidence 001222223333333 3455444433 1111 222222221111000 0000
Q ss_pred hhHHHhhcccceeEeccccCccccccccCccccccCCcEEEeccccceeeeccCcCccccCCCCcccEeecccccccccc
Q 000302 715 QGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKI 794 (1698)
Q Consensus 715 ~~~~~~~~~l~~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~l~~i 794 (1698)
...++++.|+...+...+.. . -..-.+|++++++. +....+|+| .+.+++|+.+...+ +.+..+
T Consensus 216 ----~~g~~l~~L~a~~n~l~~~~--~---~p~p~nl~~~dis~-n~l~~lp~w-----i~~~~nle~l~~n~-N~l~~l 279 (1081)
T KOG0618|consen 216 ----ISGPSLTALYADHNPLTTLD--V---HPVPLNLQYLDISH-NNLSNLPEW-----IGACANLEALNANH-NRLVAL 279 (1081)
T ss_pred ----ecCcchheeeeccCcceeec--c---ccccccceeeecch-hhhhcchHH-----HHhcccceEecccc-hhHHhh
Confidence 01123445555444433111 1 11345678888874 445566666 66778888887766 344444
Q ss_pred ccccCcCCccCCCccEEEEeecCCCCCCCcHHHHhhcccCceEEEccccCcchhhcccccceee---eccccCccccCC-
Q 000302 795 CHNRLHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRT---TLGFNGITTKDD- 870 (1698)
Q Consensus 795 ~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~l---~~~~~~~~~~~~- 870 (1698)
+. ......+|+.|.+..| .++.+|+ ....+.+|+.|++..+ ++..++......... ......+.....
T Consensus 280 p~----ri~~~~~L~~l~~~~n-el~yip~--~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 280 PL----RISRITSLVSLSAAYN-ELEYIPP--FLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred HH----HHhhhhhHHHHHhhhh-hhhhCCC--cccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccc
Confidence 32 2334566777777664 5666663 3455677777777653 233222110000000 000000100110
Q ss_pred CCCceeccccceeeccccccccccCCCCCcCCCccCCccEEEeccccCccccccHHHHHhhhccceeEeecccccccccc
Q 000302 871 PDEKVIFPSLEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEGVVE 950 (1698)
Q Consensus 871 ~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~ 950 (1698)
......++.|+.|.+.++ .+++- .++.+..+.+|+.|++++ +.|.. ||.+.+.++..|++|++++ ++++.++.
T Consensus 352 ~~~e~~~~~Lq~LylanN-~Ltd~---c~p~l~~~~hLKVLhLsy-NrL~~-fpas~~~kle~LeeL~LSG-NkL~~Lp~ 424 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANN-HLTDS---CFPVLVNFKHLKVLHLSY-NRLNS-FPASKLRKLEELEELNLSG-NKLTTLPD 424 (1081)
T ss_pred cccchhhHHHHHHHHhcC-ccccc---chhhhccccceeeeeecc-ccccc-CCHHHHhchHHhHHHhccc-chhhhhhH
Confidence 123345889999999998 56532 445567899999999999 88887 7778899999999999999 45777765
Q ss_pred cCCcccccccccceeeeccccceeeccCCCccccccccccccccCCccEEEeccCCCcceeeecccccccccCCCCCccc
Q 000302 951 TNSTESRRDEGRLIEIVFPKLLYLRLIDLPKLMGFSIGIHSVEFPSLLELQIDDCPNMKRFISISSSQDNIHANPQPLFD 1030 (1698)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~ 1030 (1698)
.... +++|++|...+ ..+..+| . ...++.|+.++++ |..|+.... +
T Consensus 425 tva~-------------~~~L~tL~ahs-N~l~~fP-e--~~~l~qL~~lDlS-~N~L~~~~l----------------~ 470 (1081)
T KOG0618|consen 425 TVAN-------------LGRLHTLRAHS-NQLLSFP-E--LAQLPQLKVLDLS-CNNLSEVTL----------------P 470 (1081)
T ss_pred HHHh-------------hhhhHHHhhcC-Cceeech-h--hhhcCcceEEecc-cchhhhhhh----------------h
Confidence 4322 67777776543 2344455 2 2247888888886 455554311 1
Q ss_pred ccccCCCcceeeeccccc
Q 000302 1031 EKVGTPNLMTLRVSYCHN 1048 (1698)
Q Consensus 1031 ~~~~l~~L~~L~i~~c~~ 1048 (1698)
....-|+|++|+++++..
T Consensus 471 ~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 471 EALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhCCCcccceeeccCCcc
Confidence 111127899999998764
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=1.9e-20 Score=213.17 Aligned_cols=168 Identities=22% Similarity=0.353 Sum_probs=93.2
Q ss_pred EEEECCCCCCCCCCccc-CCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcc--cCCccccCCCcccEEEcc
Q 000302 485 IAISLPNRDIDELPERL-ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFL--SLPSSLVCLISLRTLSLE 561 (1698)
Q Consensus 485 ~~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~--~lp~~i~~L~~Lr~L~L~ 561 (1698)
+.+-|....+..+|+.+ .+.+|..|.+.+| ....+... ++.++.||.+++.+|++. .+|..|..+..|.+||||
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN--~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHN--QLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS 111 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhh--hhHhhhhh-hccchhhHHHhhhccccccCCCCchhcccccceeeecc
Confidence 44555555555555443 4555555555554 33333333 245556666666666554 256666666666666666
Q ss_pred CccCCC-ccccccccccceeecCCCCCCccchH-hhccccccEecccCcccccccCchhhccCccCceecccCccccccc
Q 000302 562 GCQVGD-VAIVGQLKKLEILSFRNSDIQQLPRE-IGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEK 639 (1698)
Q Consensus 562 ~~~l~~-~~~i~~L~~L~~L~Ls~~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 639 (1698)
+|++.. |..+..-+++-+|+||+|+|..+|.+ +-+|+.|-.|||++| ++..+|+. +.+|.+|++|.+++|.+.
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~--- 186 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLN--- 186 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhh---
Confidence 666553 55566666666666666666666643 345666666666666 56666665 566666666666665542
Q ss_pred ccCCCccchhhhCCCCCCCEEEEEec
Q 000302 640 VEGGSNASLVELKGLSKLTTLEIHIR 665 (1698)
Q Consensus 640 ~~~~~~~~~~~L~~L~~L~~L~l~~~ 665 (1698)
.+.+..|-.|+.|+.|++++.
T Consensus 187 -----hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 187 -----HFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred -----HHHHhcCccchhhhhhhcccc
Confidence 334444445555555555443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=3.6e-20 Score=211.02 Aligned_cols=362 Identities=17% Similarity=0.253 Sum_probs=264.1
Q ss_pred eEEEECCCCCCC--CCCccc-CCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEc
Q 000302 484 SIAISLPNRDID--ELPERL-ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSL 560 (1698)
Q Consensus 484 ~~~lsl~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L 560 (1698)
+|-+.+++|++. .+|... .+++++-|.+... ....+|+.. +.+.+|..|.+.+|++.++...++.|+.||.+.+
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt--~L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT--KLEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechh--hhhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 466777888765 456554 5677887777665 566777765 7788888888999988888877888888999999
Q ss_pred cCccCC---CccccccccccceeecCCCCCCccchHhhccccccEecccCcccccccCchhhccCccCceecccCccccc
Q 000302 561 EGCQVG---DVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQW 637 (1698)
Q Consensus 561 ~~~~l~---~~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 637 (1698)
..|.+. .|+.|.+|..|.+||||+|++.+.|..+.+-.++-+|+|++| .+..||...+-+|+.|-.|++++|.+
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrL-- 162 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRL-- 162 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchh--
Confidence 888876 378889999999999999999999998888889999999998 68889988888899998999988876
Q ss_pred ccccCCCccchhhhCCCCCCCEEEEEeccccccchhhhhhccceeEEEEeccccccccccccceeeecccCchhhhhhhH
Q 000302 638 EKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGM 717 (1698)
Q Consensus 638 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~ 717 (1698)
...+..++.|.+|++|.+++|.+..+.-- .++
T Consensus 163 -------e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr-QLP---------------------------------------- 194 (1255)
T KOG0444|consen 163 -------EMLPPQIRRLSMLQTLKLSNNPLNHFQLR-QLP---------------------------------------- 194 (1255)
T ss_pred -------hhcCHHHHHHhhhhhhhcCCChhhHHHHh-cCc----------------------------------------
Confidence 45567788888888888887765422110 000
Q ss_pred HHhhcccceeEeccccCc-cccccccCccccccCCcEEEeccccceeeeccCcCccccCCCCcccEeecccccccccccc
Q 000302 718 KMFLKRTEDLYLHDLKGF-QNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICH 796 (1698)
Q Consensus 718 ~~~~~~l~~L~l~~~~~~-~~~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~l~~i~~ 796 (1698)
..++|+.|++++.+.. .++++.+. .+.||..++++ ++++..+|.. ...+++|+.|.|++ +.++++..
T Consensus 195 --smtsL~vLhms~TqRTl~N~Ptsld---~l~NL~dvDlS-~N~Lp~vPec-----ly~l~~LrrLNLS~-N~iteL~~ 262 (1255)
T KOG0444|consen 195 --SMTSLSVLHMSNTQRTLDNIPTSLD---DLHNLRDVDLS-ENNLPIVPEC-----LYKLRNLRRLNLSG-NKITELNM 262 (1255)
T ss_pred --cchhhhhhhcccccchhhcCCCchh---hhhhhhhcccc-ccCCCcchHH-----HhhhhhhheeccCc-Cceeeeec
Confidence 0122333444443332 23444554 78888888888 4566677765 56678899998887 45555543
Q ss_pred ccCcCCccCCCccEEEEeecCCCCCCCcHHHHhhcccCceEEEccccCcchhhcccccceeeeccccCccccCCCCCcee
Q 000302 797 NRLHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVI 876 (1698)
Q Consensus 797 ~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 876 (1698)
..+...+|++|.++. ++|..+| ..+..|+.|+.|.+.++. +.|.|+ ++.++.
T Consensus 263 ----~~~~W~~lEtLNlSr-NQLt~LP--~avcKL~kL~kLy~n~Nk----------------L~FeGi-----PSGIGK 314 (1255)
T KOG0444|consen 263 ----TEGEWENLETLNLSR-NQLTVLP--DAVCKLTKLTKLYANNNK----------------LTFEGI-----PSGIGK 314 (1255)
T ss_pred ----cHHHHhhhhhhcccc-chhccch--HHHhhhHHHHHHHhccCc----------------ccccCC-----ccchhh
Confidence 356678999999998 6788888 456788888888877642 223344 456677
Q ss_pred ccccceeeccccccccccCCCCCcCCCccCCccEEEeccccCccccccHHHHHhhhccceeEeeccccccc
Q 000302 877 FPSLEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICYCWSMEG 947 (1698)
Q Consensus 877 ~~~L~~L~L~~~~~l~~i~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~ 947 (1698)
+..|+.+...++ +++-+ |. ++..|..|+.|.+.+ +.|..++. .+.-|+-|+.|++...+++.-
T Consensus 315 L~~Levf~aanN-~LElV-PE---glcRC~kL~kL~L~~-NrLiTLPe--aIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 315 LIQLEVFHAANN-KLELV-PE---GLCRCVKLQKLKLDH-NRLITLPE--AIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhhhHHHHhhcc-ccccC-ch---hhhhhHHHHHhcccc-cceeechh--hhhhcCCcceeeccCCcCccC
Confidence 888888888886 66532 22 346788899998876 77776543 567788889999988887753
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=4.7e-21 Score=208.72 Aligned_cols=180 Identities=25% Similarity=0.359 Sum_probs=115.4
Q ss_pred cCCcCCeEEEECCCCCCCCCCcc-cCCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccccCCCccc
Q 000302 478 DKTQKDSIAISLPNRDIDELPER-LECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLR 556 (1698)
Q Consensus 478 ~~~~~~~~~lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr 556 (1698)
.|-+-+...+.+..|++..+.+. ..+.-+..|.++.| ....+|+.+ ..+..+..|+.++|.+..+|+.++.+..|+
T Consensus 41 wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n--~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDN--KLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLV 117 (565)
T ss_pred hhhhcchhhhhhccCchhhccHhhhcccceeEEEeccc--hhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence 34444445555666666554332 24555666666655 455556554 556666677777777777777777777777
Q ss_pred EEEccCccCCC-ccccccccccceeecCCCCCCccchHhhccccccEecccCcccccccCchhhccCccCceecccCccc
Q 000302 557 TLSLEGCQVGD-VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFS 635 (1698)
Q Consensus 557 ~L~L~~~~l~~-~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 635 (1698)
.|+.++|.+.. +++|+.+..|..|+..+|++..+|.+++++.+|..|++.++ .++.+|++.+. ++.|++|+...|..
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLL 195 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhh
Confidence 77777776554 56777777777777777777777777777777777777777 56777766443 77777777655544
Q ss_pred ccccccCCCccchhhhCCCCCCCEEEEEeccccccc
Q 000302 636 QWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMP 671 (1698)
Q Consensus 636 ~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 671 (1698)
...+.+++.|.+|..|++..|.+..+|
T Consensus 196 ---------~tlP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 196 ---------ETLPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred ---------hcCChhhcchhhhHHHHhhhcccccCC
Confidence 345666777777666666666655555
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=4.9e-19 Score=201.55 Aligned_cols=362 Identities=17% Similarity=0.231 Sum_probs=241.3
Q ss_pred CeEEEECCCCCCCCCCc--ccCCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCC-ccccCCCcccEEE
Q 000302 483 DSIAISLPNRDIDELPE--RLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLP-SSLVCLISLRTLS 559 (1698)
Q Consensus 483 ~~~~lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp-~~i~~L~~Lr~L~ 559 (1698)
..+.+.+++|.+..+.- ..++++|+.+.+-.| ....||. +-....+|..|+|.+|.|.++. +++.-+..||.||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N--~Lt~IP~-f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN--ELTRIPR-FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccc--hhhhccc-ccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 34667888887776532 257888888888777 5666765 2234456888999998888765 5577888899999
Q ss_pred ccCccCCCc--cccccccccceeecCCCCCCccc-hHhhccccccEecccCcccccccCchhhccCccCceecccCcccc
Q 000302 560 LEGCQVGDV--AIVGQLKKLEILSFRNSDIQQLP-REIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQ 636 (1698)
Q Consensus 560 L~~~~l~~~--~~i~~L~~L~~L~Ls~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 636 (1698)
|+.|.|+.+ +++..=.++++|+|++|.|+.+- ..|..|.+|-+|.|+.| .++.+|...+.+|++|+.|++..|.+.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccccee
Confidence 999988864 67777788999999999888775 46788888889999888 688888887888999999988887764
Q ss_pred cccccCCCccchhhhCCCCCCCEEEEEeccccccchhh--hhhccceeEEEEeccccccccccccceeeecccCchhhhh
Q 000302 637 WEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQDL--ISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLG 714 (1698)
Q Consensus 637 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~ 714 (1698)
....-.+.+|+.|+.|.+..|++..+..++ .+.+++.+++..+..-
T Consensus 235 --------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~------------------------ 282 (873)
T KOG4194|consen 235 --------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ------------------------ 282 (873)
T ss_pred --------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh------------------------
Confidence 222345678888888888888887776665 5566666554322110
Q ss_pred hhHHHhhcccceeEeccccCccccccccCccccccCCcEEEeccccceeeeccCcCccccCCCCcccEeecccccccccc
Q 000302 715 QGMKMFLKRTEDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKI 794 (1698)
Q Consensus 715 ~~~~~~~~~l~~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~l~~i 794 (1698)
.+. -..+ -++..|+.|+++. +.++.+.... ..-.++|+.|+|++ +.++++
T Consensus 283 -----------~vn----------~g~l---fgLt~L~~L~lS~-NaI~rih~d~----WsftqkL~~LdLs~-N~i~~l 332 (873)
T KOG4194|consen 283 -----------AVN----------EGWL---FGLTSLEQLDLSY-NAIQRIHIDS----WSFTQKLKELDLSS-NRITRL 332 (873)
T ss_pred -----------hhh----------cccc---cccchhhhhccch-hhhheeecch----hhhcccceeEeccc-cccccC
Confidence 000 0111 2677777777774 4455443332 44567888888876 456666
Q ss_pred ccccCcCCccCCCccEEEEeecCCCCCCCcHHHHhhcccCceEEEccccCcchhhcccccceeeeccccCccccCCCCCc
Q 000302 795 CHNRLHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEK 874 (1698)
Q Consensus 795 ~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~ 874 (1698)
..+.+ ..+..|++|.++. +.+..+.. ..+.++.+|++|++.++. +.-.. .+....+
T Consensus 333 ~~~sf---~~L~~Le~LnLs~-Nsi~~l~e-~af~~lssL~~LdLr~N~-ls~~I------------------EDaa~~f 388 (873)
T KOG4194|consen 333 DEGSF---RVLSQLEELNLSH-NSIDHLAE-GAFVGLSSLHKLDLRSNE-LSWCI------------------EDAAVAF 388 (873)
T ss_pred ChhHH---HHHHHhhhhcccc-cchHHHHh-hHHHHhhhhhhhcCcCCe-EEEEE------------------ecchhhh
Confidence 44322 3456777777776 34555432 345677888888887642 11111 0011333
Q ss_pred eeccccceeeccccccccccCCCCCcCCCccCCccEEEeccccCccccccHHHHHhhhccceeEeec
Q 000302 875 VIFPSLEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICY 941 (1698)
Q Consensus 875 ~~~~~L~~L~L~~~~~l~~i~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~ 941 (1698)
..+++|+.|.+.++ ++..+....| ..+++|+.|++.+ +-+.++-+ ..+..+ .|++|.+..
T Consensus 389 ~gl~~LrkL~l~gN-qlk~I~krAf---sgl~~LE~LdL~~-NaiaSIq~-nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGN-QLKSIPKRAF---SGLEALEHLDLGD-NAIASIQP-NAFEPM-ELKELVMNS 448 (873)
T ss_pred ccchhhhheeecCc-eeeecchhhh---ccCcccceecCCC-Ccceeecc-cccccc-hhhhhhhcc
Confidence 44788888888888 7877766655 6788888888888 66655333 344444 677666554
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=1.3e-18 Score=209.50 Aligned_cols=467 Identities=18% Similarity=0.198 Sum_probs=250.9
Q ss_pred ccChhhhccCCceeEEEecCCCcccCCc-cccCCCcccEEEccCccCCC-ccccccccccceeecCCCCCCccchHhhcc
Q 000302 520 KIPDLFFEGMNELRVVHFTRTCFLSLPS-SLVCLISLRTLSLEGCQVGD-VAIVGQLKKLEILSFRNSDIQQLPREIGQL 597 (1698)
Q Consensus 520 ~i~~~~f~~l~~LrvL~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L 597 (1698)
.||..+|..-. +..|++..|.+-..|- .+.+..+|+.|++++|.+.. |..|..+.+|+.|+++.|.|.++|.+++++
T Consensus 12 ~ip~~i~~~~~-~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~ 90 (1081)
T KOG0618|consen 12 LIPEQILNNEA-LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNM 90 (1081)
T ss_pred ccchhhccHHH-HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhh
Confidence 34444433333 5555555555544441 22333446666666665553 455666666666666666666666666666
Q ss_pred ccccEecccCcccccccCchhhccCccCceecccCcccccccccCCCccchhhhCCCCCCCEEEEEecc-ccccchhhhh
Q 000302 598 VQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRD-ARIMPQDLIS 676 (1698)
Q Consensus 598 ~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~-~~~~~~~~~~ 676 (1698)
.+|++|+|.++ .+..+|.+ +..+.+|+.|+++.|.+ ...+.-+..++.+..+..++|. +..++..
T Consensus 91 ~~l~~lnL~~n-~l~~lP~~-~~~lknl~~LdlS~N~f---------~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~--- 156 (1081)
T KOG0618|consen 91 RNLQYLNLKNN-RLQSLPAS-ISELKNLQYLDLSFNHF---------GPIPLVIEVLTAEEELAASNNEKIQRLGQT--- 156 (1081)
T ss_pred hcchhheeccc-hhhcCchh-HHhhhcccccccchhcc---------CCCchhHHhhhHHHHHhhhcchhhhhhccc---
Confidence 66666666555 45555555 55566666666555544 1222223333333333333330 0000000
Q ss_pred hccceeEEEEeccccccccccccceeeecccCchhhhhhhHHHhhcccce-eEeccccCccccccccCccccccCCcEEE
Q 000302 677 MKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRTED-LYLHDLKGFQNVVHELDDGEVFSELKHLH 755 (1698)
Q Consensus 677 ~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~l~~-L~l~~~~~~~~~l~~l~~~~~l~~L~~L~ 755 (1698)
.++.+. +.+..+. ..+..-...++. |.++..... .-. ...+++|+.|+
T Consensus 157 -~ik~~~------------------l~~n~l~------~~~~~~i~~l~~~ldLr~N~~~---~~d---ls~~~~l~~l~ 205 (1081)
T KOG0618|consen 157 -SIKKLD------------------LRLNVLG------GSFLIDIYNLTHQLDLRYNEME---VLD---LSNLANLEVLH 205 (1081)
T ss_pred -cchhhh------------------hhhhhcc------cchhcchhhhheeeecccchhh---hhh---hhhccchhhhh
Confidence 000000 0000011 111111122222 444432221 111 22666677766
Q ss_pred eccccceeeeccCcCccccCCCCcccEeeccccccccccccccCcCCccCCCccEEEEeecCCCCCCCcHHHHhhcccCc
Q 000302 756 VEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNRLHEDESFSNLRIIKVGECDKLRHLFSFSMAKNLLRLQ 835 (1698)
Q Consensus 756 l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~ 835 (1698)
... +.+..+ ...-|+|+.|...+++-.+.. ....-.+|++++++. .++..+| .+...+.+|+
T Consensus 206 c~r-n~ls~l--------~~~g~~l~~L~a~~n~l~~~~------~~p~p~nl~~~dis~-n~l~~lp--~wi~~~~nle 267 (1081)
T KOG0618|consen 206 CER-NQLSEL--------EISGPSLTALYADHNPLTTLD------VHPVPLNLQYLDISH-NNLSNLP--EWIGACANLE 267 (1081)
T ss_pred hhh-cccceE--------EecCcchheeeeccCcceeec------cccccccceeeecch-hhhhcch--HHHHhcccce
Confidence 653 233332 223467888888776544222 223346899999988 6788888 7888999999
Q ss_pred eEEEccccCcchhhcccccceeeeccccCccccCCCCCceeccccceeeccccccccccCCCCCcCCCccCCccEEEecc
Q 000302 836 KISVFDCKSLEIIVGLDMEKQRTTLGFNGITTKDDPDEKVIFPSLEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAF 915 (1698)
Q Consensus 836 ~L~l~~c~~l~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~~l~~L~~L~l~~ 915 (1698)
.+.+... .+..++ .......+|+.|.+..| .++.+.+. ...+.+|++|++..
T Consensus 268 ~l~~n~N-~l~~lp----------------------~ri~~~~~L~~l~~~~n-el~yip~~----le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 268 ALNANHN-RLVALP----------------------LRISRITSLVSLSAAYN-ELEYIPPF----LEGLKSLRTLDLQS 319 (1081)
T ss_pred Eecccch-hHHhhH----------------------HHHhhhhhHHHHHhhhh-hhhhCCCc----ccccceeeeeeehh
Confidence 9998774 334433 23334678888888887 67755332 25688999999998
Q ss_pred ccCccccccHHHHHhhhc-cceeEeecccccccccccCCcccccccccceeeeccccceeeccCCCcccccccccccccc
Q 000302 916 CDRLKYLFSYSMVNSLVQ-LQHLEICYCWSMEGVVETNSTESRRDEGRLIEIVFPKLLYLRLIDLPKLMGFSIGIHSVEF 994 (1698)
Q Consensus 916 C~~L~~l~~~~~~~~L~~-L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~~~~~~~~~~~ 994 (1698)
++|..++. ..+.-+.. |..|..+. ..++..+... +..++.|+.|.+.+..--.. +..... .+
T Consensus 320 -N~L~~lp~-~~l~v~~~~l~~ln~s~-n~l~~lp~~~------------e~~~~~Lq~LylanN~Ltd~-c~p~l~-~~ 382 (1081)
T KOG0618|consen 320 -NNLPSLPD-NFLAVLNASLNTLNVSS-NKLSTLPSYE------------ENNHAALQELYLANNHLTDS-CFPVLV-NF 382 (1081)
T ss_pred -ccccccch-HHHhhhhHHHHHHhhhh-cccccccccc------------chhhHHHHHHHHhcCccccc-chhhhc-cc
Confidence 88888554 34433333 66666664 3444444211 12477788888777442222 211111 37
Q ss_pred CCccEEEeccCCCcceeeecccccccccCCCCCcccccccCCCcceeeeccccchhHHhhccCccccccccccccccEEe
Q 000302 995 PSLLELQIDDCPNMKRFISISSSQDNIHANPQPLFDEKVGTPNLMTLRVSYCHNIEEIIRHVGEDVKENRITFNQLKNLE 1074 (1698)
Q Consensus 995 ~~L~~L~l~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~ 1074 (1698)
+.|+.|++++. .|..||.. ....++.|+.|.+|+ +.++.+|.... .+..|++|.
T Consensus 383 ~hLKVLhLsyN-rL~~fpas----------------~~~kle~LeeL~LSG-NkL~~Lp~tva--------~~~~L~tL~ 436 (1081)
T KOG0618|consen 383 KHLKVLHLSYN-RLNSFPAS----------------KLRKLEELEELNLSG-NKLTTLPDTVA--------NLGRLHTLR 436 (1081)
T ss_pred cceeeeeeccc-ccccCCHH----------------HHhchHHhHHHhccc-chhhhhhHHHH--------hhhhhHHHh
Confidence 78888888875 34444321 113567788888888 56777775544 367788887
Q ss_pred ccCCCCcceeecCCccccCCCccEEeeccCcCcc--ccccccccccccceeeeec
Q 000302 1075 LDDLPSLTSFCLGNCTLEFPSLERVFVRNCRNMK--TFSEGVVCAPKLKKVQVTK 1127 (1698)
Q Consensus 1075 l~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~l~--~~~~~~~~~~~L~~L~l~~ 1127 (1698)
..++. +..+|. ...++.|+.++|+. .++. .++... .-|+|++|++++
T Consensus 437 ahsN~-l~~fPe---~~~l~qL~~lDlS~-N~L~~~~l~~~~-p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 437 AHSNQ-LLSFPE---LAQLPQLKVLDLSC-NNLSEVTLPEAL-PSPNLKYLDLSG 485 (1081)
T ss_pred hcCCc-eeechh---hhhcCcceEEeccc-chhhhhhhhhhC-CCcccceeeccC
Confidence 76643 555552 33678888888854 3443 222221 116777777775
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.65 E-value=1e-18 Score=190.74 Aligned_cols=170 Identities=25% Similarity=0.311 Sum_probs=150.9
Q ss_pred CCCCCCCCCccc-CCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEccCccCCCc
Q 000302 490 PNRDIDELPERL-ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDV 568 (1698)
Q Consensus 490 ~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~ 568 (1698)
.+|.+..+|..+ .+.++..+.+.+| ...++|+.... |+.|+.||...|-++.+|+.++.+..|..|+|++|.+..+
T Consensus 145 ~~N~i~slp~~~~~~~~l~~l~~~~n--~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~l 221 (565)
T KOG0472|consen 145 TNNQISSLPEDMVNLSKLSKLDLEGN--KLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFL 221 (565)
T ss_pred cccccccCchHHHHHHHHHHhhcccc--chhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccC
Confidence 345677777654 6778888888777 67788888766 9999999999999999999999999999999999999988
Q ss_pred cccccccccceeecCCCCCCccchHhh-ccccccEecccCcccccccCchhhccCccCceecccCcccccccccCCCccc
Q 000302 569 AIVGQLKKLEILSFRNSDIQQLPREIG-QLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNAS 647 (1698)
Q Consensus 569 ~~i~~L~~L~~L~Ls~~~i~~LP~~i~-~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 647 (1698)
+.|+...-|..|.++.|.|+.+|.+++ .|.+|.+||+++| +++++|.+ +..|.+|+.|++++|.+ ...
T Consensus 222 Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde-~clLrsL~rLDlSNN~i---------s~L 290 (565)
T KOG0472|consen 222 PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDE-ICLLRSLERLDLSNNDI---------SSL 290 (565)
T ss_pred CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchH-HHHhhhhhhhcccCCcc---------ccC
Confidence 899999999999999999999999987 8999999999999 89999998 89999999999999987 346
Q ss_pred hhhhCCCCCCCEEEEEeccccccchhh
Q 000302 648 LVELKGLSKLTTLEIHIRDARIMPQDL 674 (1698)
Q Consensus 648 ~~~L~~L~~L~~L~l~~~~~~~~~~~~ 674 (1698)
+.+|++| +|+.|.+.+|.+..+.+++
T Consensus 291 p~sLgnl-hL~~L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 291 PYSLGNL-HLKFLALEGNPLRTIRREI 316 (565)
T ss_pred Ccccccc-eeeehhhcCCchHHHHHHH
Confidence 7789999 9999999999988777775
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.1e-16 Score=154.48 Aligned_cols=168 Identities=22% Similarity=0.357 Sum_probs=150.3
Q ss_pred CCCCCCcccCCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEccCccCC-Ccccc
Q 000302 493 DIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVG-DVAIV 571 (1698)
Q Consensus 493 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~-~~~~i 571 (1698)
++.+++..+.++++..|.+++| ....+|+.+ ..+++|.+|++++|+|+++|.+++.+..||.|+++-|++. .|..|
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHN--Kl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHN--KLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred cHhhcccccchhhhhhhhcccC--ceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 3456677778888888888887 677788876 8899999999999999999999999999999999999987 47999
Q ss_pred ccccccceeecCCCCCC--ccchHhhccccccEecccCcccccccCchhhccCccCceecccCcccccccccCCCccchh
Q 000302 572 GQLKKLEILSFRNSDIQ--QLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLV 649 (1698)
Q Consensus 572 ~~L~~L~~L~Ls~~~i~--~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 649 (1698)
|.++-|++|||++|++. .+|..+..++.|+.|+|++| ...-+|++ +++|++||.|.+.+|.+ -..+.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndl---------l~lpk 167 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDL---------LSLPK 167 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCch---------hhCcH
Confidence 99999999999999775 78999999999999999999 68999998 99999999999998876 35688
Q ss_pred hhCCCCCCCEEEEEeccccccchhh
Q 000302 650 ELKGLSKLTTLEIHIRDARIMPQDL 674 (1698)
Q Consensus 650 ~L~~L~~L~~L~l~~~~~~~~~~~~ 674 (1698)
+++.|++|+.|++.+|....+|.++
T Consensus 168 eig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHHhcccceeeecChhh
Confidence 9999999999999999999998876
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=6.3e-14 Score=135.68 Aligned_cols=160 Identities=21% Similarity=0.348 Sum_probs=138.8
Q ss_pred CCeEEEECCCCCCCCCCccc-CCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEc
Q 000302 482 KDSIAISLPNRDIDELPERL-ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSL 560 (1698)
Q Consensus 482 ~~~~~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L 560 (1698)
..+.++.++.|++..+|..+ ++.+|+.|.+++| .+.++|..+ +.+.+||.|++.-|.+..+|..|+.+..|++|||
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn--qie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN--QIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccc--hhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 45678888889888886654 7889999999988 677888775 8899999999999999999999999999999999
Q ss_pred cCccCCC---ccccccccccceeecCCCCCCccchHhhccccccEecccCcccccccCchhhccCccCceecccCccccc
Q 000302 561 EGCQVGD---VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQW 637 (1698)
Q Consensus 561 ~~~~l~~---~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 637 (1698)
.+|.+.. |..|..+..|+-|.|++|.++-+|..+++|++||.|.+++| .+-++|.. ++.|+.|++|.+.+|.+.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceee-
Confidence 9999873 68888899999999999999999999999999999999999 68889998 999999999999988773
Q ss_pred ccccCCCccchhhhCCCC
Q 000302 638 EKVEGGSNASLVELKGLS 655 (1698)
Q Consensus 638 ~~~~~~~~~~~~~L~~L~ 655 (1698)
..+.+++++.
T Consensus 187 --------vlppel~~l~ 196 (264)
T KOG0617|consen 187 --------VLPPELANLD 196 (264)
T ss_pred --------ecChhhhhhh
Confidence 3455666553
No 17
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.30 E-value=1.9e-14 Score=159.56 Aligned_cols=176 Identities=15% Similarity=0.137 Sum_probs=114.9
Q ss_pred CccceEeccCCCCcccccCCcccCCCCcccEEEEecccccccccccccCccccCCCCccCcCcCccccccccccccccce
Q 000302 1417 PQLTFLILRGLPRLKSFYPGVHISEWPVLKKLVVWECAEVELLASEFFGLQETPANSQHDINVPQPLFSIYKIGFRCLED 1496 (1698)
Q Consensus 1417 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~ 1496 (1698)
+-+..+++.+|..+++.......-.|..||.|..++|..+.+.+-..+ .+ +..+|+.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL----------------------g~-~~~~L~~ 324 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL----------------------GQ-HCHNLQV 324 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH----------------------hc-CCCceEE
Confidence 344455555555555543322333466666666666666555432211 01 2355666
Q ss_pred eeccccccccccccCCCCcccccCCccEEEEecCCCcccccchHhHhhhccccEEEEccccccccccccccccccccccc
Q 000302 1497 LELSTLPKLLHLWKGKSKLSHVFQNLTTLDVSICDGLINLVTLAAAESLVKLARMKIAACGKMEKVIQQVGAEVVEEDSI 1576 (1698)
Q Consensus 1497 L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~ 1576 (1698)
|.+..|..+++.+.... ..+..+|+.+++.+|...++....+.+.+++.|++|.+++|..+.+ +|....+.. .
T Consensus 325 l~l~~c~~fsd~~ft~l--~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD----~gi~~l~~~-~ 397 (483)
T KOG4341|consen 325 LELSGCQQFSDRGFTML--GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD----EGIRHLSSS-S 397 (483)
T ss_pred Eeccccchhhhhhhhhh--hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh----hhhhhhhhc-c
Confidence 66666666555443332 4556789999999998888876678888999999999999986533 222222211 1
Q ss_pred cccccccccccccCCCccccccCCCcceeeCCCccEEEEeccCCccccC
Q 000302 1577 ATFNQLQYLGIDCLPSLTCFCFGRSKNKLEFPSLEQVVVRECPNMEMFS 1625 (1698)
Q Consensus 1577 ~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~psL~~l~v~~C~~~~~~~ 1625 (1698)
.....|+.++|.+||.+++--.. ....|+.||.+++.+|..+.+-+
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le---~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLE---HLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred ccccccceeeecCCCCchHHHHH---HHhhCcccceeeeechhhhhhhh
Confidence 22567999999999999988774 46679999999999999887754
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.30 E-value=3.7e-12 Score=165.37 Aligned_cols=128 Identities=23% Similarity=0.307 Sum_probs=102.1
Q ss_pred ccCCceeEEEecCCCcccCCccccCCCcccEEEccCcc--CCCc--cccccccccceeecCCC-CCCccchHhhcccccc
Q 000302 527 EGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQ--VGDV--AIVGQLKKLEILSFRNS-DIQQLPREIGQLVQLR 601 (1698)
Q Consensus 527 ~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~--l~~~--~~i~~L~~L~~L~Ls~~-~i~~LP~~i~~L~~L~ 601 (1698)
......|.+.+.+|.+..++.+..+- .|++|-+.++. +..+ ..|..+++|++|||++| .+.+||++|+.|.+||
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEeccchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 34567888888888888777665443 79999998886 4443 44888999999999987 7889999999999999
Q ss_pred EecccCcccccccCchhhccCccCceecccCcccccccccCCCccchhhhCCCCCCCEEEEEec
Q 000302 602 LLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIR 665 (1698)
Q Consensus 602 ~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 665 (1698)
+|+++++ .++.+|.+ +++|.+|.+|++..+... .....-+..|.+|++|.+...
T Consensus 599 yL~L~~t-~I~~LP~~-l~~Lk~L~~Lnl~~~~~l--------~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 599 YLDLSDT-GISHLPSG-LGNLKKLIYLNLEVTGRL--------ESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccCC-CccccchH-HHHHHhhheecccccccc--------ccccchhhhcccccEEEeecc
Confidence 9999999 79999998 999999999999875442 222344555888888887644
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.21 E-value=7e-11 Score=149.95 Aligned_cols=116 Identities=17% Similarity=0.143 Sum_probs=73.2
Q ss_pred CceeEEEecCCCcccCCccccCCCcccEEEccCccCCCccccccccccceeecCCCCCCccchHhhccccccEecccCcc
Q 000302 530 NELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCR 609 (1698)
Q Consensus 530 ~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~ 609 (1698)
..-.+|+++++.++.+|..+. .+|+.|++++|.++.++. .+.+|++|++++|+++.+|.. ..+|+.|++++|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N- 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN- 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---ccccceeeccCC-
Confidence 345567777777777777665 377777777777765433 246777888887777777753 356777777777
Q ss_pred cccccCchhhccCccCceecccCcccccccccCCCccchhhhCCCCCCCEEEEEeccccc
Q 000302 610 RLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARI 669 (1698)
Q Consensus 610 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 669 (1698)
.+..+|.. +.+|+.|++++|.+. ..+. .+++|+.|+++.|.+..
T Consensus 273 ~L~~Lp~l----p~~L~~L~Ls~N~Lt---------~LP~---~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 273 PLTHLPAL----PSGLCKLWIFGNQLT---------SLPV---LPPGLQELSVSDNQLAS 316 (788)
T ss_pred chhhhhhc----hhhcCEEECcCCccc---------cccc---cccccceeECCCCcccc
Confidence 46666642 245667777766553 0111 13456677766665443
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.18 E-value=1.8e-10 Score=146.30 Aligned_cols=254 Identities=18% Similarity=0.154 Sum_probs=153.4
Q ss_pred EEEECCCCCCCCCCcccCCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEccCcc
Q 000302 485 IAISLPNRDIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQ 564 (1698)
Q Consensus 485 ~~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~ 564 (1698)
..+.+..+.+..+|..+. ++|+.|.+..| ....+|. .+++|++|++++|.++.+|.. ..+|+.|++++|.
T Consensus 204 ~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N--~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP-AHITTLVIPDN--NLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred cEEEcCCCCCCcCCcchh-cCCCEEEccCC--cCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 345566666766766543 46777777776 4555654 257788888888888888753 3577888888887
Q ss_pred CCCccccccccccceeecCCCCCCccchHhhccccccEecccCcccccccCchhhccCccCceecccCcccccccccCCC
Q 000302 565 VGDVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGS 644 (1698)
Q Consensus 565 l~~~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 644 (1698)
+..++. -+.+|+.|++++|++..+|.. +.+|+.|++++| .+..+|.. . .+|+.|++++|.+.
T Consensus 274 L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~L~Ls~N~L~-------- 335 (788)
T PRK15387 274 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-P---SELCKLWAYNNQLT-------- 335 (788)
T ss_pred hhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC-c---ccccccccccCccc--------
Confidence 765432 235677888888888888763 467888888888 67777652 2 35667777776653
Q ss_pred ccchhhhCCCCCCCEEEEEeccccccchhhhhhccceeEEEEeccccccccccccceeeecccCchhhhhhhHHHhhccc
Q 000302 645 NASLVELKGLSKLTTLEIHIRDARIMPQDLISMKLEIFRMFIGNVVDWYHKFERSRLVKLDKLEKNILLGQGMKMFLKRT 724 (1698)
Q Consensus 645 ~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~l 724 (1698)
. +..+ ..+|+.|+++.|.+..+|.. ..+|..
T Consensus 336 ~--LP~l--p~~Lq~LdLS~N~Ls~LP~l--p~~L~~------------------------------------------- 366 (788)
T PRK15387 336 S--LPTL--PSGLQELSVSDNQLASLPTL--PSELYK------------------------------------------- 366 (788)
T ss_pred c--cccc--ccccceEecCCCccCCCCCC--Ccccce-------------------------------------------
Confidence 0 1111 13677888887776655532 112222
Q ss_pred ceeEeccccCccccccccCccccccCCcEEEeccccceeeeccCcCccccCCCCcccEeeccccccccccccccCcCCcc
Q 000302 725 EDLYLHDLKGFQNVVHELDDGEVFSELKHLHVEHSYEILHIVSSIGQVCCKVFPLLESLSLCRLFNLEKICHNRLHEDES 804 (1698)
Q Consensus 725 ~~L~l~~~~~~~~~l~~l~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~L~~~~~l~~i~~~~~~~~~~ 804 (1698)
|++.+... .. ++. ...+|+.|+++++ .+..++. .+++|+.|+++++ .+..++. .
T Consensus 367 --L~Ls~N~L-~~-LP~-----l~~~L~~LdLs~N-~Lt~LP~--------l~s~L~~LdLS~N-~LssIP~-------l 420 (788)
T PRK15387 367 --LWAYNNRL-TS-LPA-----LPSGLKELIVSGN-RLTSLPV--------LPSELKELMVSGN-RLTSLPM-------L 420 (788)
T ss_pred --ehhhcccc-cc-Ccc-----cccccceEEecCC-cccCCCC--------cccCCCEEEccCC-cCCCCCc-------c
Confidence 22221110 00 111 1235666776643 3333322 2356777777763 3544431 2
Q ss_pred CCCccEEEEeecCCCCCCCcHHHHhhcccCceEEEccccC
Q 000302 805 FSNLRIIKVGECDKLRHLFSFSMAKNLLRLQKISVFDCKS 844 (1698)
Q Consensus 805 ~~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~c~~ 844 (1698)
+.+|+.|++++ +++..+| ..+..+++|+.|++++++.
T Consensus 421 ~~~L~~L~Ls~-NqLt~LP--~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 421 PSGLLSLSVYR-NQLTRLP--ESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhhhhhhhcc-CcccccC--hHHhhccCCCeEECCCCCC
Confidence 34677788877 4677777 3466788889999888653
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.17 E-value=7.2e-11 Score=151.22 Aligned_cols=135 Identities=13% Similarity=0.273 Sum_probs=80.6
Q ss_pred EEEECCCCCCCCCCcccCCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEccCcc
Q 000302 485 IAISLPNRDIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQ 564 (1698)
Q Consensus 485 ~~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~ 564 (1698)
..+.+.++++..+|..+ .++++.|.+.+| .+..+|..++ .+|++|++++|.+..+|..+. .+|+.|+|++|.
T Consensus 181 ~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N--~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 181 TELRLKILGLTTIPACI-PEQITTLILDNN--ELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred eEEEeCCCCcCcCCccc-ccCCcEEEecCC--CCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 45666666666666543 245666766666 4445665553 356777777777766665543 356777777776
Q ss_pred CCCc-cccccccccceeecCCCCCCccchHhhccccccEecccCcccccccCchhhccCccCceecccCccc
Q 000302 565 VGDV-AIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFS 635 (1698)
Q Consensus 565 l~~~-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 635 (1698)
+..+ ..+. .+|++|++++|++..+|..+. .+|++|++++| .++.+|.. +. .+|+.|++++|.+
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSL 316 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCcc
Confidence 6542 3332 356777777766666666553 36677777766 56666654 22 3566666665544
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.11 E-value=1.3e-10 Score=148.96 Aligned_cols=95 Identities=20% Similarity=0.323 Sum_probs=47.3
Q ss_pred CceeEEEecCCCcccCCccccCCCcccEEEccCccCCCc-cccccccccceeecCCCCCCccchHhhccccccEecccCc
Q 000302 530 NELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDV-AIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNC 608 (1698)
Q Consensus 530 ~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~ 608 (1698)
+.|+.|+|++|.+..+|..+. .+|++|++++|.++.+ ..+. .+|+.|+|++|.+..+|..+. .+|+.|++++|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 345555555555555554443 3555555555555432 2221 245555555555555555443 34555555555
Q ss_pred ccccccCchhhccCccCceecccCcc
Q 000302 609 RRLQAIAPNVISKLSRLEELYMGDSF 634 (1698)
Q Consensus 609 ~~l~~lp~~~i~~L~~L~~L~l~~~~ 634 (1698)
.+..+|.. +. .+|+.|++++|.
T Consensus 273 -~L~~LP~~-l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 273 -KISCLPEN-LP--EELRYLSVYDNS 294 (754)
T ss_pred -ccCccccc-cC--CCCcEEECCCCc
Confidence 45555543 21 245555555443
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.11 E-value=1.5e-12 Score=144.76 Aligned_cols=43 Identities=21% Similarity=0.491 Sum_probs=21.9
Q ss_pred cccccEEEEecCCCCCcCCChhhhhccCCCcEEEEecccccce
Q 000302 1183 FSNLRSLGVDNCTNMSSAIPANLLRCLNNLERLKVRNCDSLEE 1225 (1698)
Q Consensus 1183 ~~~L~~L~i~~C~~l~~~~p~~~l~~l~~L~~L~l~~c~~l~~ 1225 (1698)
++++..|.+.+|.++++....+....++.|+.|++..|.+++.
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~ 205 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD 205 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH
Confidence 4555555555555555443334444555555555555554443
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.95 E-value=7.1e-11 Score=130.36 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=32.8
Q ss_pred eeccccceeeccccccccccCCCCCcCCCccCCccEEEeccccCccccccHHHHHhhhccceeEeec
Q 000302 875 VIFPSLEELDLYSLITIEKLWPKQFQGMSSCQNLTKVTVAFCDRLKYLFSYSMVNSLVQLQHLEICY 941 (1698)
Q Consensus 875 ~~~~~L~~L~L~~~~~l~~i~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~L~~L~~L~l~~ 941 (1698)
.....+++|.|..+ ++..+-.+.| ..+..|+.|++++ ++++.+.| ..+..+.+|.+|.+-+
T Consensus 295 e~~a~l~eL~L~~N-~l~~v~~~~f---~~ls~L~tL~L~~-N~it~~~~-~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 295 EGAAELQELYLTRN-KLEFVSSGMF---QGLSGLKTLSLYD-NQITTVAP-GAFQTLFSLSTLNLLS 355 (498)
T ss_pred cchhhhhhhhcCcc-hHHHHHHHhh---hccccceeeeecC-CeeEEEec-ccccccceeeeeehcc
Confidence 33556666666665 5554444443 3455666666666 56655332 3445555555555544
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.93 E-value=7.2e-11 Score=130.30 Aligned_cols=138 Identities=22% Similarity=0.337 Sum_probs=103.5
Q ss_pred CCCCCCcccCCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccC-CccccCCCcccEEEccC-ccCCCc--
Q 000302 493 DIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSL-PSSLVCLISLRTLSLEG-CQVGDV-- 568 (1698)
Q Consensus 493 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~l-p~~i~~L~~Lr~L~L~~-~~l~~~-- 568 (1698)
++.++|..+.. ....+.+..| .+..||+..|+.+++||.|||++|+|+.+ |..|..|..|-.|-+-+ |+|+++
T Consensus 57 GL~eVP~~LP~-~tveirLdqN--~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 57 GLTEVPANLPP-ETVEIRLDQN--QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcccCcccCCC-cceEEEeccC--CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 44555554432 3445667766 77788888899999999999999988875 77888888877766655 778764
Q ss_pred cccccccccceeecCCCCCCccc-hHhhccccccEecccCcccccccCchhhccCccCceecccCcc
Q 000302 569 AIVGQLKKLEILSFRNSDIQQLP-REIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSF 634 (1698)
Q Consensus 569 ~~i~~L~~L~~L~Ls~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 634 (1698)
..|++|..|+-|.+.-|.+.-++ +.+..|.+|..|.+.+| .+..++.+.+..+.+++++.+..|.
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 67888888888888888777554 56788888888888888 6888887667888888888766543
No 26
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=4.6e-08 Score=135.21 Aligned_cols=262 Identities=16% Similarity=0.225 Sum_probs=160.5
Q ss_pred cccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh--------------------H
Q 000302 155 YEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV--------------------E 214 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~--------------------~ 214 (1698)
...++-|....+.+-+ ....+++.|+|++|.||||++.++... ++.++|+ .
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 3456777655554432 235789999999999999999998853 2357887 0
Q ss_pred ---------H---------------HHHHHHHHHc-cCcEEEEEcCcccccc--cccccCc-ccccccccCCCCCCeEEE
Q 000302 215 ---------R---------------AEKLRQRLKN-VKRVLVILDNIWKLLN--LDAVGIP-FGDVKKERNDDRSRCTVL 266 (1698)
Q Consensus 215 ---------~---------------~~~l~~~l~~-~k~~LlvlDdv~~~~~--~~~~~~~-~~~~~~~~~~~~~g~kil 266 (1698)
. ...+...+.. +++++|||||+...++ ...+... +.. ...+.++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~-------~~~~~~lv 156 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH-------QPENLTLV 156 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh-------CCCCeEEE
Confidence 0 0011122222 5789999999976531 1112111 122 34567888
Q ss_pred EEeCchhhhhc-cc-CCcceEEcc----CCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHHhcC
Q 000302 267 LTSRNRDVLCN-DM-NSQKFFLIE----VLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNK 340 (1698)
Q Consensus 267 vTtR~~~v~~~-~~-~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~ 340 (1698)
||||...-... .. .......+. +|+.+|+.++|....|... -.+.+.+|.+.|+|.|+++..++..++..
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 99998421110 00 112345555 9999999999998877432 23456789999999999999998877554
Q ss_pred CchhHHHHHHHHHcccccccCcc-hHHHHHHH-HHHHhcCCchHHHHHHHHhcccCCCCCCCHHHHHHHHhhcCcccccc
Q 000302 341 RLYVWNDSLERLRNSTSRQIHGM-EENVYSSI-ELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVR 418 (1698)
Q Consensus 341 ~~~~w~~~~~~l~~~~~~~~~~~-~~~~~~~l-~~sy~~L~~~~lk~cfl~~s~fp~~~~i~~~~li~~w~~~g~~~~~~ 418 (1698)
.... ...... ..+. ...+...+ .-.|+.||++ .+..++..|+++ .++.+ +... +. +.
T Consensus 233 ~~~~-~~~~~~--------~~~~~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~-l~~~-----l~-~~- 291 (903)
T PRK04841 233 NSSL-HDSARR--------LAGINASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDA-LIVR-----VT-GE- 291 (903)
T ss_pred CCch-hhhhHh--------hcCCCchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHH-HHHH-----Hc-CC-
Confidence 3211 111111 1111 12233333 3347899988 799999999987 34432 2221 11 11
Q ss_pred cHHHHHHHHHHHHHHHHhcccccc-CCC--CeEEEchHHHHHHHHHhc
Q 000302 419 TSEAARNRVYTLVDNLKASSLLLD-GDK--DEVKLHDIIYAVAVSIAR 463 (1698)
Q Consensus 419 ~~~~~~~~~~~~~~~L~~~~ll~~-~~~--~~~~mhdlv~~~a~~~~~ 463 (1698)
.++ ...+++|.+++++.. .+. ..|+.|+++|+++.....
T Consensus 292 --~~~----~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 292 --ENG----QMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred --CcH----HHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 111 245888999998653 232 579999999999988753
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.84 E-value=1.1e-08 Score=116.57 Aligned_cols=172 Identities=22% Similarity=0.313 Sum_probs=96.8
Q ss_pred ccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh------------------------
Q 000302 158 FDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV------------------------ 213 (1698)
Q Consensus 158 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~------------------------ 213 (1698)
|+||+++++.|.+++..+..+.+.|+|+.|+|||+|++.+.+..+... + .++|+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 789999999999999887778999999999999999999998774321 1 12222
Q ss_pred -------------------------HHHHHHHHHHHc-cCcEEEEEcCccccc-cc---ccccCcccccccccCCCCCCe
Q 000302 214 -------------------------ERAEKLRQRLKN-VKRVLVILDNIWKLL-NL---DAVGIPFGDVKKERNDDRSRC 263 (1698)
Q Consensus 214 -------------------------~~~~~l~~~l~~-~k~~LlvlDdv~~~~-~~---~~~~~~~~~~~~~~~~~~~g~ 263 (1698)
.....+.+.+.+ +++++||+||+.... .. ..+...+....+... .....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ 157 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQNV 157 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccCCc
Confidence 011122222222 356999999998776 21 122112211111111 23334
Q ss_pred EEEEEeCchhhhhc-------ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000302 264 TVLLTSRNRDVLCN-------DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 332 (1698)
Q Consensus 264 kilvTtR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 332 (1698)
.+|+++....+... ..+....+.+++|+.+++++++...+.....-+.-++..++|+..+||.|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 45555544433321 1233456999999999999999998743311012345568999999999988764
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.78 E-value=1.5e-07 Score=111.40 Aligned_cols=178 Identities=21% Similarity=0.171 Sum_probs=106.9
Q ss_pred cccccchHHHHHHHHHHHh-----cCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh---HHHHHHHHHHHc-
Q 000302 155 YEQFDSRMKIFQNIMEVLK-----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV---ERAEKLRQRLKN- 225 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~---~~~~~l~~~l~~- 225 (1698)
..+|+|++..++.+..++. ......+.++|++|+|||+||+.+++..... +.. ... .....+...+..
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~~~-~~~~~~~~~~~l~~~l~~~ 79 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--LKI-TSGPALEKPGDLAAILTNL 79 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--EEE-eccchhcCchhHHHHHHhc
Confidence 4579999999999988886 2335568899999999999999999887532 211 111 111222222221
Q ss_pred cCcEEEEEcCccccc--ccccccCcccc-----ccc-------ccCCCCCCeEEEEEeCchhhhhcccC-CcceEEccCC
Q 000302 226 VKRVLVILDNIWKLL--NLDAVGIPFGD-----VKK-------ERNDDRSRCTVLLTSRNRDVLCNDMN-SQKFFLIEVL 290 (1698)
Q Consensus 226 ~k~~LlvlDdv~~~~--~~~~~~~~~~~-----~~~-------~~~~~~~g~kilvTtR~~~v~~~~~~-~~~~~~l~~L 290 (1698)
+...++++||+.... ..+.+...+.+ +.+ ......+.+-|..|||...+...... ....+.++++
T Consensus 80 ~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l 159 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFY 159 (305)
T ss_pred ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCC
Confidence 355688999986541 11111111000 000 00001224556677776544331111 2356789999
Q ss_pred CHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHH
Q 000302 291 SYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANA 336 (1698)
Q Consensus 291 ~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~ 336 (1698)
+.+|..+++.+.++..... --.+.+..|++.|+|.|-.+..++..
T Consensus 160 ~~~e~~~il~~~~~~~~~~-~~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 160 TVEELAEIVSRSAGLLNVE-IEPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred CHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHHhCCCcchHHHHHHH
Confidence 9999999999988632221 22456788999999999776555543
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.77 E-value=1e-07 Score=113.36 Aligned_cols=183 Identities=19% Similarity=0.144 Sum_probs=108.4
Q ss_pred CCcccccchHHHHHHHHHHHh-----cCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHHHHHHHHHHHc-c
Q 000302 153 TAYEQFDSRMKIFQNIMEVLK-----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVERAEKLRQRLKN-V 226 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~~~~l~~~l~~-~ 226 (1698)
.....|+||+..++.+..++. ....+.+.|+|++|+||||+|+.+++.....-.+...-+......+...+.. +
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l~ 101 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNLE 101 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhcc
Confidence 356789999999999887775 2335678899999999999999999987532111111111222223222221 3
Q ss_pred CcEEEEEcCccccc--ccccccCcccc-----cccc-------cCCCCCCeEEEEEeCchhhhhccc-CCcceEEccCCC
Q 000302 227 KRVLVILDNIWKLL--NLDAVGIPFGD-----VKKE-------RNDDRSRCTVLLTSRNRDVLCNDM-NSQKFFLIEVLS 291 (1698)
Q Consensus 227 k~~LlvlDdv~~~~--~~~~~~~~~~~-----~~~~-------~~~~~~g~kilvTtR~~~v~~~~~-~~~~~~~l~~L~ 291 (1698)
+.-+|++||+.... ..+.+...+.+ +.+. ...-.+.+-|..|||...+..... .....+.+++++
T Consensus 102 ~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~ 181 (328)
T PRK00080 102 EGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYT 181 (328)
T ss_pred cCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCC
Confidence 56688999986542 11111100000 0000 000112455667777554432100 123578999999
Q ss_pred HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHH
Q 000302 292 YEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANA 336 (1698)
Q Consensus 292 ~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~ 336 (1698)
.++..+++.+.++..... --.+.+..|++.|+|.|-.+..+...
T Consensus 182 ~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 182 VEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred HHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHH
Confidence 999999999998642222 22466889999999999655555443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=4.4e-09 Score=109.51 Aligned_cols=127 Identities=21% Similarity=0.271 Sum_probs=40.6
Q ss_pred cCCceeEEEecCCCcccCCcccc-CCCcccEEEccCccCCCccccccccccceeecCCCCCCccchHh-hccccccEecc
Q 000302 528 GMNELRVVHFTRTCFLSLPSSLV-CLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREI-GQLVQLRLLDL 605 (1698)
Q Consensus 528 ~l~~LrvL~L~~~~i~~lp~~i~-~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~Ls~~~i~~LP~~i-~~L~~L~~L~L 605 (1698)
+...+|.|+|.+|.|+.+. .++ .+.+|+.|+|++|.|+.++.+..|.+|++|++++|.|..++..+ ..+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4456677777777777654 354 46677777777777777777777777777777777777776555 35677777777
Q ss_pred cCcccccccCc-hhhccCccCceecccCcccccccccCCCccchhhhCCCCCCCEEE
Q 000302 606 RNCRRLQAIAP-NVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLE 661 (1698)
Q Consensus 606 ~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 661 (1698)
++| .+..+.. ..++.+++|++|++.+|.+. ........-+..+++|+.||
T Consensus 96 ~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~-----~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 96 SNN-KISDLNELEPLSSLPKLRVLSLEGNPVC-----EKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGG-----GSTTHHHHHHHH-TT-SEET
T ss_pred cCC-cCCChHHhHHHHcCCCcceeeccCCccc-----chhhHHHHHHHHcChhheeC
Confidence 776 4544422 12556666666666666553 11122233344555555554
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=5.8e-09 Score=108.61 Aligned_cols=131 Identities=24% Similarity=0.282 Sum_probs=30.5
Q ss_pred CCCCCcccCCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEccCccCCCc-ccc-
Q 000302 494 IDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDV-AIV- 571 (1698)
Q Consensus 494 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~-~~i- 571 (1698)
|+..+...++.++|.|.+.++ .+..+.. .-..+.+|++|+|++|.|..++ .+..+.+|++|++++|.|+.+ ..+
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n--~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGN--QISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp -----------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHH
T ss_pred ccccccccccccccccccccc--ccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchH
Confidence 333444444445555555554 2222211 1113445555555555555543 244555555555555555544 223
Q ss_pred ccccccceeecCCCCCCccc--hHhhccccccEecccCcccccccC---chhhccCccCceec
Q 000302 572 GQLKKLEILSFRNSDIQQLP--REIGQLVQLRLLDLRNCRRLQAIA---PNVISKLSRLEELY 629 (1698)
Q Consensus 572 ~~L~~L~~L~Ls~~~i~~LP--~~i~~L~~L~~L~L~~~~~l~~lp---~~~i~~L~~L~~L~ 629 (1698)
..+++|++|++++|.|..+- ..+..+++|++|++.+|+ +...+ .-++..+++|+.|+
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEET
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeC
Confidence 23555555555555444332 234445555555555553 22222 12344555555555
No 32
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.71 E-value=1.7e-06 Score=106.67 Aligned_cols=261 Identities=19% Similarity=0.213 Sum_probs=140.3
Q ss_pred ccccchHHHHHHHHHHHhc----CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh------------------
Q 000302 156 EQFDSRMKIFQNIMEVLKD----TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV------------------ 213 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~------------------ 213 (1698)
..|+||+++++++...+.+ .....+.|+|+.|+|||++++.++++.......-.++++
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 4689999999999998852 344668899999999999999999987654312223333
Q ss_pred --------------HHHHHHHHHHHc-cCcEEEEEcCccccc------ccccccCcccccccccCCCCCCeE--EEEEeC
Q 000302 214 --------------ERAEKLRQRLKN-VKRVLVILDNIWKLL------NLDAVGIPFGDVKKERNDDRSRCT--VLLTSR 270 (1698)
Q Consensus 214 --------------~~~~~l~~~l~~-~k~~LlvlDdv~~~~------~~~~~~~~~~~~~~~~~~~~~g~k--ilvTtR 270 (1698)
+....+.+.+.+ +++.+||||+++... .+..+...+. ...+++ ||.++.
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~--------~~~~~~v~vI~i~~ 181 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE--------EYPGARIGVIGISS 181 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh--------ccCCCeEEEEEEEC
Confidence 011223333332 456899999998753 1222211111 122333 566665
Q ss_pred chhhhhc------ccCCcceEEccCCCHHHHHHHHHHHhCC-----CCCCCchHHHHHHHHHHhCCChHHHHHHHHHH--
Q 000302 271 NRDVLCN------DMNSQKFFLIEVLSYEEAWCLFEKIVGD-----SAKASDFRVIADEIVRRCGGLPVAIKTIANAL-- 337 (1698)
Q Consensus 271 ~~~v~~~------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~-----~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l-- 337 (1698)
...+... ..-....+.+++.+.++..+++..++.. ...+..++.+++..+...|..+.|+.++-.+.
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 5433221 0111356789999999999999988731 11122223333333333466777777664432
Q ss_pred h---cCCchhHHHHHHHHHcccccccCcchHHHHHHHHHHHhcCCchHHHHHHHHh-c-ccCC-CCCCCHHHHHHH--Hh
Q 000302 338 K---NKRLYVWNDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFRLC-A-LRKD-GSPIPIDDLMRY--GI 409 (1698)
Q Consensus 338 ~---~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~-s-~fp~-~~~i~~~~li~~--w~ 409 (1698)
. ++.....+++.+.+.... .....-.+..||.++ +.|++. + .... ...+...++... .+
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~~-----------~~~~~~~~~~L~~~~--k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l 328 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKSE-----------IVHLSEVLRTLPLHE--KLLLRAIVRLLKKGGDEVTTGEVYEEYKEL 328 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHHH-----------HHHHHHHHhcCCHHH--HHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 1 122122333322221111 123344678899873 444432 2 2221 134555555432 22
Q ss_pred hcCcccccccHHHHHHHHHHHHHHHHhccccc
Q 000302 410 GLGLFSNVRTSEAARNRVYTLVDNLKASSLLL 441 (1698)
Q Consensus 410 ~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~ 441 (1698)
+..+-.... ....+.+++..|...++|.
T Consensus 329 ~~~~~~~~~----~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 329 CEELGYEPR----THTRFYEYINKLDMLGIIN 356 (394)
T ss_pred HHHcCCCcC----cHHHHHHHHHHHHhcCCeE
Confidence 211100000 2244566788899999885
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=1.8e-09 Score=124.95 Aligned_cols=185 Identities=22% Similarity=0.369 Sum_probs=148.5
Q ss_pred EEEECCCCCCCCCCccc-CCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEccCc
Q 000302 485 IAISLPNRDIDELPERL-ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGC 563 (1698)
Q Consensus 485 ~~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~ 563 (1698)
....++.|.+.++|... .+--|.++.+..| .+..+|..+ ..+..|.+|+|+.|.+..+|..++.| -|++|-+++|
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n--~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHN--CIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhc--cceecchhh-hhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecC
Confidence 45566777777777654 4556777777776 344555544 77889999999999999999988877 5999999999
Q ss_pred cCCC-ccccccccccceeecCCCCCCccchHhhccccccEecccCcccccccCchhhccCccCceecccCcccccccccC
Q 000302 564 QVGD-VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEG 642 (1698)
Q Consensus 564 ~l~~-~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~ 642 (1698)
+++. |..|+.+.+|..||.+.|.+..+|..++.|.+|+.|+++.| .+..+|+. +..| .|..|+++.|.+
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfScNki------- 223 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSCNKI------- 223 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecccCce-------
Confidence 9885 68899889999999999999999999999999999999998 68889887 6644 488999998887
Q ss_pred CCccchhhhCCCCCCCEEEEEeccccccchhh-hhhccceeEEE
Q 000302 643 GSNASLVELKGLSKLTTLEIHIRDARIMPQDL-ISMKLEIFRMF 685 (1698)
Q Consensus 643 ~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~~~ 685 (1698)
...+..+.+|++|++|-+.+|.++..|..+ ...+.+.+++.
T Consensus 224 --s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL 265 (722)
T KOG0532|consen 224 --SYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYL 265 (722)
T ss_pred --eecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeee
Confidence 356778899999999999999999888887 45555555443
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.66 E-value=6.1e-09 Score=125.02 Aligned_cols=137 Identities=20% Similarity=0.213 Sum_probs=91.3
Q ss_pred hhhccCCceeEEEecCCCcc-----cCCccccCCCcccEEEccCccCCC--------ccccccccccceeecCCCCCC-c
Q 000302 524 LFFEGMNELRVVHFTRTCFL-----SLPSSLVCLISLRTLSLEGCQVGD--------VAIVGQLKKLEILSFRNSDIQ-Q 589 (1698)
Q Consensus 524 ~~f~~l~~LrvL~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~--------~~~i~~L~~L~~L~Ls~~~i~-~ 589 (1698)
.+|..+..|++|+++++.+. .++..+...+.|++|+++++.+.. +..+.++.+|++|++++|.+. .
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 45667777888888888873 356667777788888888887652 245667778888888888776 4
Q ss_pred cchHhhcccc---ccEecccCcccccc-----cCchhhccC-ccCceecccCcccccccccCCCccchhhhCCCCCCCEE
Q 000302 590 LPREIGQLVQ---LRLLDLRNCRRLQA-----IAPNVISKL-SRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTL 660 (1698)
Q Consensus 590 LP~~i~~L~~---L~~L~L~~~~~l~~-----lp~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L 660 (1698)
.+..+..+.+ |++|++++|. +.. +... +..+ ++|++|++++|.+... ........+..+.+|+.|
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA----SCEALAKALRANRDLKEL 170 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch----HHHHHHHHHHhCCCcCEE
Confidence 5566666666 8888888873 431 2222 4556 7888888888776411 011223455666777777
Q ss_pred EEEecc
Q 000302 661 EIHIRD 666 (1698)
Q Consensus 661 ~l~~~~ 666 (1698)
++..+.
T Consensus 171 ~l~~n~ 176 (319)
T cd00116 171 NLANNG 176 (319)
T ss_pred ECcCCC
Confidence 776554
No 35
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.65 E-value=5.3e-07 Score=104.83 Aligned_cols=158 Identities=18% Similarity=0.235 Sum_probs=97.0
Q ss_pred cCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh----------------------------HHHHHHHH----
Q 000302 174 DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV----------------------------ERAEKLRQ---- 221 (1698)
Q Consensus 174 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~----------------------------~~~~~l~~---- 221 (1698)
.....++.|+|++|+||||+++.+++...... + .++|+ .....+..
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 34456899999999999999999998865321 1 11221 01112222
Q ss_pred HHHccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeCchhhhh---c-----ccCCcceEEccCCC
Q 000302 222 RLKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC---N-----DMNSQKFFLIEVLS 291 (1698)
Q Consensus 222 ~l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~---~-----~~~~~~~~~l~~L~ 291 (1698)
....++++++|+||+|... .++.+.. +.+. .........|++|....-... . .......+.+++++
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~-l~~~---~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRM-LSNF---QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHH-HhCc---ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 2234688999999998863 3444321 1110 000223345566655431110 0 01113467899999
Q ss_pred HHHHHHHHHHHhC---CCCCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000302 292 YEEAWCLFEKIVG---DSAKASDFRVIADEIVRRCGGLPVAIKTIANAL 337 (1698)
Q Consensus 292 ~~e~~~Lf~~~~~---~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 337 (1698)
.+|..+++...+. ......-..+..+.|++.++|.|..|..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999987763 211122235788999999999999999998876
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=3.8e-09 Score=112.12 Aligned_cols=134 Identities=16% Similarity=0.183 Sum_probs=114.7
Q ss_pred CCceeEEEecCCCcccCCccccCCCcccEEEccCccCCCccccccccccceeecCCCCCCccchHhhccccccEecccCc
Q 000302 529 MNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNC 608 (1698)
Q Consensus 529 l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~ 608 (1698)
.+.|..|||++|.|+.+-++..-++.+|.|++++|.+..+..+..|.+|+.||||+|.+.++-.--.+|-+.++|+|++|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 36788999999999999888888999999999999999888899999999999999988887766678889999999999
Q ss_pred ccccccCchhhccCccCceecccCcccccccccCCCccchhhhCCCCCCCEEEEEeccccccch
Q 000302 609 RRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQ 672 (1698)
Q Consensus 609 ~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~ 672 (1698)
.+..+.. +++|-+|..|++.+|.+. .-..+..+++|+.|..+.+..|.+..++.
T Consensus 363 -~iE~LSG--L~KLYSLvnLDl~~N~Ie-------~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 363 -KIETLSG--LRKLYSLVNLDLSSNQIE-------ELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred -hHhhhhh--hHhhhhheeccccccchh-------hHHHhcccccccHHHHHhhcCCCccccch
Confidence 6877743 899999999999998875 23446778899999999998887766554
No 37
>PF05729 NACHT: NACHT domain
Probab=98.63 E-value=1.6e-07 Score=100.35 Aligned_cols=121 Identities=26% Similarity=0.311 Sum_probs=81.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhcccC----CEEEEh--------------------------HH-HHHHHHHHHcc
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLF----DKVVFV--------------------------ER-AEKLRQRLKNV 226 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~~~--------------------------~~-~~~l~~~l~~~ 226 (1698)
+++.|+|.+|+||||+++.++......... ..++|+ .. ...+...+.+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 578999999999999999999988765433 344454 00 01122233347
Q ss_pred CcEEEEEcCcccccc---------cccccCcccccccccCCCCCCeEEEEEeCchhh--hhcccCCcceEEccCCCHHHH
Q 000302 227 KRVLVILDNIWKLLN---------LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDV--LCNDMNSQKFFLIEVLSYEEA 295 (1698)
Q Consensus 227 k~~LlvlDdv~~~~~---------~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v--~~~~~~~~~~~~l~~L~~~e~ 295 (1698)
++++||+|++++... +..+...+-. . ....+++|+||+|.... ..........+.+.++++++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~---~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLP---Q--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhh---h--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 999999999987633 1111111111 0 02468999999999876 221233446899999999999
Q ss_pred HHHHHHHh
Q 000302 296 WCLFEKIV 303 (1698)
Q Consensus 296 ~~Lf~~~~ 303 (1698)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998875
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=2.5e-09 Score=123.72 Aligned_cols=163 Identities=21% Similarity=0.323 Sum_probs=139.1
Q ss_pred EEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEccCccCCC-ccccccccccceeecCCC
Q 000302 507 SLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD-VAIVGQLKKLEILSFRNS 585 (1698)
Q Consensus 507 r~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~Ls~~ 585 (1698)
...+++.| ....+|..+ ..+..|..+.|..|.+..+|..+++|..|.||+|+.|+++. |..++.|. |+.|-+++|
T Consensus 78 ~~aDlsrN--R~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRN--RFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhcccc--ccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 34556665 556677664 66788999999999999999999999999999999999986 56676654 899999999
Q ss_pred CCCccchHhhccccccEecccCcccccccCchhhccCccCceecccCcccccccccCCCccchhhhCCCCCCCEEEEEec
Q 000302 586 DIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIR 665 (1698)
Q Consensus 586 ~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 665 (1698)
+++.+|.+|+-+.+|.+||.+.| .+..+|.. ++.|.+|+.|.+..|.+ ...+.++..|+ |..|++++|
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l---------~~lp~El~~Lp-Li~lDfScN 221 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHL---------EDLPEELCSLP-LIRLDFSCN 221 (722)
T ss_pred ccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhh---------hhCCHHHhCCc-eeeeecccC
Confidence 99999999999999999999999 69999998 99999999999988776 35677888664 889999999
Q ss_pred cccccchhh-hhhccceeEEE
Q 000302 666 DARIMPQDL-ISMKLEIFRMF 685 (1698)
Q Consensus 666 ~~~~~~~~~-~~~~L~~l~~~ 685 (1698)
.+..+|.++ .+..|+.+.+.
T Consensus 222 kis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 222 KISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred ceeecchhhhhhhhheeeeec
Confidence 999999887 67777777653
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.59 E-value=4.5e-07 Score=101.35 Aligned_cols=150 Identities=13% Similarity=0.197 Sum_probs=94.5
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHH--H----HHHHHHHHccCcEEEEEcCcccc---ccccc-c
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVER--A----EKLRQRLKNVKRVLVILDNIWKL---LNLDA-V 245 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~--~----~~l~~~l~~~k~~LlvlDdv~~~---~~~~~-~ 245 (1698)
..+.+.+||+.|+|||+||+.+++....+ ...+.|+.. . ..+.+.+. +.-+||+||+|.. .+|+. +
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~~~~~~~~~~~~--~~dlLilDDi~~~~~~~~~~~~l 113 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQYFSPAVLENLE--QQDLVCLDDLQAVIGNEEWELAI 113 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhhhhhHHHHhhcc--cCCEEEEeChhhhcCChHHHHHH
Confidence 34678999999999999999999987644 233445521 1 12222332 3449999999974 34542 2
Q ss_pred cCcccccccccCCCCCCeEEEE-EeCc---------hhhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHH
Q 000302 246 GIPFGDVKKERNDDRSRCTVLL-TSRN---------RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVI 315 (1698)
Q Consensus 246 ~~~~~~~~~~~~~~~~g~kilv-TtR~---------~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~ 315 (1698)
...+... ...|..||| |++. +++.. .+.....++++++++++.++++++.+..... .--+++
T Consensus 114 ~~l~n~~------~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l-~l~~~v 185 (229)
T PRK06893 114 FDLFNRI------KEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI-ELSDEV 185 (229)
T ss_pred HHHHHHH------HHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHH
Confidence 2222220 123555554 4443 24444 3555678999999999999999998853221 222567
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q 000302 316 ADEIVRRCGGLPVAIKTIANAL 337 (1698)
Q Consensus 316 ~~~i~~~c~GlPlai~~~~~~l 337 (1698)
..-|++.+.|-.-++..+-..+
T Consensus 186 ~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 186 ANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHhccCCHHHHHHHHHHH
Confidence 8889999988776655444333
No 40
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.55 E-value=4.7e-07 Score=110.96 Aligned_cols=171 Identities=17% Similarity=0.212 Sum_probs=108.8
Q ss_pred CcccccchHHHHHH---HHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh----HHHHHHHHH----
Q 000302 154 AYEQFDSRMKIFQN---IMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV----ERAEKLRQR---- 222 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~----~~~~~l~~~---- 222 (1698)
...+|+|++..+.. +.+++.......+.++|++|+||||+|+.+++.... .|...-.. .....+.+.
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~--~~~~l~a~~~~~~~ir~ii~~~~~~ 87 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA--PFEALSAVTSGVKDLREVIEEARQR 87 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC--CEEEEecccccHHHHHHHHHHHHHh
Confidence 45678999888766 888888777778899999999999999999987642 23222111 112222222
Q ss_pred HHccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEE--EeCchh--hhhcccCCcceEEccCCCHHHHH
Q 000302 223 LKNVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLL--TSRNRD--VLCNDMNSQKFFLIEVLSYEEAW 296 (1698)
Q Consensus 223 l~~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilv--TtR~~~--v~~~~~~~~~~~~l~~L~~~e~~ 296 (1698)
...+++.+|++|+++... +.+.+...+ ..|..+++ ||.+.. +..........+.+.++++++.+
T Consensus 88 ~~~g~~~vL~IDEi~~l~~~~q~~LL~~l----------e~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~ 157 (413)
T PRK13342 88 RSAGRRTILFIDEIHRFNKAQQDALLPHV----------EDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIE 157 (413)
T ss_pred hhcCCceEEEEechhhhCHHHHHHHHHHh----------hcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHH
Confidence 223578899999998763 333332222 22444444 344432 11112233468999999999999
Q ss_pred HHHHHHhCCCC-CC-CchHHHHHHHHHHhCCChHHHHHHHHH
Q 000302 297 CLFEKIVGDSA-KA-SDFRVIADEIVRRCGGLPVAIKTIANA 336 (1698)
Q Consensus 297 ~Lf~~~~~~~~-~~-~~~~~~~~~i~~~c~GlPlai~~~~~~ 336 (1698)
.++++.+.... .. .-.++....|++.|+|.|..+..+...
T Consensus 158 ~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 158 QLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99998764211 11 223566788999999999776554433
No 41
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.49 E-value=3.2e-06 Score=104.32 Aligned_cols=259 Identities=19% Similarity=0.208 Sum_probs=160.7
Q ss_pred cccchHHHHHHHHHHHhc-CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh----------------------
Q 000302 157 QFDSRMKIFQNIMEVLKD-TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV---------------------- 213 (1698)
Q Consensus 157 ~~~gr~~~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~---------------------- 213 (1698)
..+-|. .+++.|.+ .+.+.+.|..|+|.|||||+.+.+..... =..+.|.
T Consensus 20 ~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~al~~ 92 (894)
T COG2909 20 NYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAALQQ 92 (894)
T ss_pred cccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHHHHH
Confidence 344554 35555553 47899999999999999999999873322 2457787
Q ss_pred ----------------------HHHHHHHHHHHc-cCcEEEEEcCccccc------ccccccCcccccccccCCCCCCeE
Q 000302 214 ----------------------ERAEKLRQRLKN-VKRVLVILDNIWKLL------NLDAVGIPFGDVKKERNDDRSRCT 264 (1698)
Q Consensus 214 ----------------------~~~~~l~~~l~~-~k~~LlvlDdv~~~~------~~~~~~~~~~~~~~~~~~~~~g~k 264 (1698)
...+.+...+.. +++..+||||..-.. .++.+... ...+-.
T Consensus 93 ~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~----------~P~~l~ 162 (894)
T COG2909 93 ATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH----------APENLT 162 (894)
T ss_pred hCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh----------CCCCeE
Confidence 011222222222 478899999975542 23333333 335778
Q ss_pred EEEEeCchhhhhc-cc-CCcceEEcc----CCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 000302 265 VLLTSRNRDVLCN-DM-NSQKFFLIE----VLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALK 338 (1698)
Q Consensus 265 ilvTtR~~~v~~~-~~-~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~ 338 (1698)
.|||||+..-... .+ -....+++. .++.+|+-++|....|..-+ +.-.+.+.+..+|-+-|+..++=.++
T Consensus 163 lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 9999998743221 01 112233333 58899999999988764333 33367799999999999999888887
Q ss_pred cCCchhHHHHHHHHHcccccccCcchHHHH-HHHHHHHhcCCchHHHHHHHHhcccCCCCCCCHHHHHHHHhhcCccccc
Q 000302 339 NKRLYVWNDSLERLRNSTSRQIHGMEENVY-SSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNV 417 (1698)
Q Consensus 339 ~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~-~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~i~~~~li~~w~~~g~~~~~ 417 (1698)
+....+ ..... ..|..+.+. -...=-++.||++ ++...+-||+++.-. ..|+..-.+
T Consensus 239 ~~~~~~--q~~~~--------LsG~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~----~eL~~~Ltg------- 296 (894)
T COG2909 239 NNTSAE--QSLRG--------LSGAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFN----DELCNALTG------- 296 (894)
T ss_pred CCCcHH--HHhhh--------ccchHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhh----HHHHHHHhc-------
Confidence 443332 11110 111111111 1233346889998 799999999987311 133322111
Q ss_pred ccHHHHHHHHHHHHHHHHhccccc---cCCCCeEEEchHHHHHHHHHhcc
Q 000302 418 RTSEAARNRVYTLVDNLKASSLLL---DGDKDEVKLHDIIYAVAVSIARD 464 (1698)
Q Consensus 418 ~~~~~~~~~~~~~~~~L~~~~ll~---~~~~~~~~mhdlv~~~a~~~~~~ 464 (1698)
++.+..++++|.+++|+. +.+...|+.|++..||....-..
T Consensus 297 ------~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 297 ------EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ------CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 122335689999999985 23338899999999999876554
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.47 E-value=1.3e-06 Score=98.72 Aligned_cols=167 Identities=19% Similarity=0.238 Sum_probs=107.7
Q ss_pred CCcccccchHHHH---HHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-H-------HHHHHHH
Q 000302 153 TAYEQFDSRMKIF---QNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV-E-------RAEKLRQ 221 (1698)
Q Consensus 153 ~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~-~-------~~~~l~~ 221 (1698)
...++++|.+-.+ .-|..++..+.+.-...||++|+||||||+.++...... |...--+ . ..+.-++
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f~~~sAv~~gvkdlr~i~e~a~~ 98 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--FEALSAVTSGVKDLREIIEEARK 98 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--eEEeccccccHHHHHHHHHHHHH
Confidence 3456677766444 345567777888888899999999999999999976533 5433222 1 2233333
Q ss_pred HHHccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEE--EeCchhhh--hcccCCcceEEccCCCHHHH
Q 000302 222 RLKNVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLL--TSRNRDVL--CNDMNSQKFFLIEVLSYEEA 295 (1698)
Q Consensus 222 ~l~~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilv--TtR~~~v~--~~~~~~~~~~~l~~L~~~e~ 295 (1698)
....++|.+|++|.|..- .+-+.+ +|. -..|..|+| ||.|+... ........+|.+++|+.+|-
T Consensus 99 ~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~-------vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di 168 (436)
T COG2256 99 NRLLGRRTILFLDEIHRFNKAQQDAL---LPH-------VENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDI 168 (436)
T ss_pred HHhcCCceEEEEehhhhcChhhhhhh---hhh-------hcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHH
Confidence 333478999999999765 333444 333 456777765 56665321 11234567999999999999
Q ss_pred HHHHHHHhC-----CCCCCCch-HHHHHHHHHHhCCChHHHH
Q 000302 296 WCLFEKIVG-----DSAKASDF-RVIADEIVRRCGGLPVAIK 331 (1698)
Q Consensus 296 ~~Lf~~~~~-----~~~~~~~~-~~~~~~i~~~c~GlPlai~ 331 (1698)
.+++++.+- -......+ ++....+++.++|---+.-
T Consensus 169 ~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL 210 (436)
T COG2256 169 KKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL 210 (436)
T ss_pred HHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH
Confidence 999999551 11111222 4466778889988765433
No 43
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.42 E-value=1.3e-07 Score=113.41 Aligned_cols=136 Identities=21% Similarity=0.238 Sum_probs=72.4
Q ss_pred hhccCCceeEEEecCCCccc-CCccccCCCc---ccEEEccCccCCC------ccccccc-cccceeecCCCCCC-----
Q 000302 525 FFEGMNELRVVHFTRTCFLS-LPSSLVCLIS---LRTLSLEGCQVGD------VAIVGQL-KKLEILSFRNSDIQ----- 588 (1698)
Q Consensus 525 ~f~~l~~LrvL~L~~~~i~~-lp~~i~~L~~---Lr~L~L~~~~l~~------~~~i~~L-~~L~~L~Ls~~~i~----- 588 (1698)
.|..+++|+.|++++|.+.. .+..+..+.+ |++|++++|.+.. ...+..+ .+|+.|++++|.+.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 44556677777777666642 3333333333 7777777766552 1344555 66777777776655
Q ss_pred ccchHhhccccccEecccCccccc-----ccCchhhccCccCceecccCcccccccccCCCccchhhhCCCCCCCEEEEE
Q 000302 589 QLPREIGQLVQLRLLDLRNCRRLQ-----AIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIH 663 (1698)
Q Consensus 589 ~LP~~i~~L~~L~~L~L~~~~~l~-----~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~ 663 (1698)
.++..+..+.+|++|++++| .+. .++.. +..+++|++|++++|.+. ..........+..+++|+.|+++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~----~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 156 ALAKALRANRDLKELNLANN-GIGDAGIRALAEG-LKANCNLEVLDLNNNGLT----DEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred HHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHH-HHhCCCCCEEeccCCccC----hHHHHHHHHHhcccCCCCEEecC
Confidence 33444555666777777666 333 12222 344456677776666542 00001112334455666666666
Q ss_pred ecc
Q 000302 664 IRD 666 (1698)
Q Consensus 664 ~~~ 666 (1698)
.+.
T Consensus 230 ~n~ 232 (319)
T cd00116 230 DNN 232 (319)
T ss_pred CCc
Confidence 554
No 44
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.38 E-value=5.8e-05 Score=92.12 Aligned_cols=271 Identities=14% Similarity=0.131 Sum_probs=141.1
Q ss_pred ccccchHHHHHHHHHHHhc----CCceEEEEEcCCCchHHHHHHHHHHHHhhcc-cC---CEEEEh---------H----
Q 000302 156 EQFDSRMKIFQNIMEVLKD----TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK-LF---DKVVFV---------E---- 214 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F---~~~~~~---------~---- 214 (1698)
+.|+||+.++++|..++.+ .....+.|+|++|+|||++|+.+++...... .. -.++|+ .
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4689999999999999873 3446899999999999999999998764321 11 123333 0
Q ss_pred HH---------------------HHHHHHHH-ccCcEEEEEcCccccc-ccccccCcccccccccCCCCCCeEEEEEeCc
Q 000302 215 RA---------------------EKLRQRLK-NVKRVLVILDNIWKLL-NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN 271 (1698)
Q Consensus 215 ~~---------------------~~l~~~l~-~~k~~LlvlDdv~~~~-~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~ 271 (1698)
.. ..+.+.+. .+++++||||+++... ..+.+...+....+..........+|++|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 01 11222332 2467899999998772 1112111111100000001123344555543
Q ss_pred hhhhhc---c---cCCcceEEccCCCHHHHHHHHHHHhC----CCCCCCchHHHHHHHHHHhCCChHHHHHHH-HHH--h
Q 000302 272 RDVLCN---D---MNSQKFFLIEVLSYEEAWCLFEKIVG----DSAKASDFRVIADEIVRRCGGLPVAIKTIA-NAL--K 338 (1698)
Q Consensus 272 ~~v~~~---~---~~~~~~~~l~~L~~~e~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~GlPlai~~~~-~~l--~ 338 (1698)
...... . .-....+.+++.+.+|..++++.++. ....+++..+...+++....|.|-.+..+. .+. .
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 332110 0 01135688999999999999998873 112223333445556777778885443322 211 1
Q ss_pred ---cCCchhHHHHHHHHHcccccccCcchHHHHHHHHHHHhcCCchHHHHHHHHhccc--CCCCCCCHHHHHHHHh--hc
Q 000302 339 ---NKRLYVWNDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFRLCALR--KDGSPIPIDDLMRYGI--GL 411 (1698)
Q Consensus 339 ---~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~f--p~~~~i~~~~li~~w~--~~ 411 (1698)
+......+++.+.+.... .....-+...||.++ +..+..++.. .++..+...++...+- ++
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~-----------~~~~~~~i~~l~~~~-~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIE-----------KDRLLELIRGLPTHS-KLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHH-----------HHHHHHHHHcCCHHH-HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 111222333322221110 123344667888773 4333333211 1345566666666331 12
Q ss_pred CcccccccHHHHHHHHHHHHHHHHhcccccc
Q 000302 412 GLFSNVRTSEAARNRVYTLVDNLKASSLLLD 442 (1698)
Q Consensus 412 g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 442 (1698)
.+-... -....+..+++.|...|+|..
T Consensus 323 ~~~~~~----~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 323 DIGVDP----LTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred hcCCCC----CcHHHHHHHHHHHHhcCCeEE
Confidence 110011 123556677899999999853
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.36 E-value=7.9e-08 Score=102.30 Aligned_cols=127 Identities=20% Similarity=0.237 Sum_probs=75.9
Q ss_pred CCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEccCccCCCcccc-ccccccceee
Q 000302 503 CPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIV-GQLKKLEILS 581 (1698)
Q Consensus 503 ~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i-~~L~~L~~L~ 581 (1698)
+.-|.++++++| .+..+.++ .+-.+.+|+|++++|.|..+-. +..|++|..|||++|.+..+..+ .+|-|.+.|.
T Consensus 283 Wq~LtelDLS~N--~I~~iDES-vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGN--LITQIDES-VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhcccccc--chhhhhhh-hhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 344555556555 33333333 2445666777777776665543 66666777777777766655333 4566666677
Q ss_pred cCCCCCCccchHhhccccccEecccCcccccccC-chhhccCccCceecccCccc
Q 000302 582 FRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIA-PNVISKLSRLEELYMGDSFS 635 (1698)
Q Consensus 582 Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp-~~~i~~L~~L~~L~l~~~~~ 635 (1698)
|++|.|..+. ++++|++|..||+++| .+..+. ...||+|+.|++|.+.+|.+
T Consensus 359 La~N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCc
Confidence 7777666654 4667777777777766 444442 12267777777777766654
No 46
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=1.4e-05 Score=99.18 Aligned_cols=174 Identities=14% Similarity=0.190 Sum_probs=116.2
Q ss_pred CCcccccchHHHHHHHHHHHhcCC-ceEEEEEcCCCchHHHHHHHHHHHHhhc-------------------ccCCEEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIED-------------------KLFDKVVF 212 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~~ 212 (1698)
....+++|.+..++.|.+++..++ .+.+.++|..|+||||+|+.+++....+ +.|..+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 446788999999999999998665 4567899999999999999998865321 12223445
Q ss_pred hH-----HHHHHHHHHH-------ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeCch-hhhhc
Q 000302 213 VE-----RAEKLRQRLK-------NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCN 277 (1698)
Q Consensus 213 ~~-----~~~~l~~~l~-------~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~-~v~~~ 277 (1698)
++ .++.+++.+. .++.-++|||++.... .++.+...+-+ .....++|++|++. .+...
T Consensus 93 IDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE-------PP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 93 MDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-------PPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred ecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh-------cCCCeEEEEEECChhhccch
Confidence 41 1233333322 2355689999998774 36666554443 34577777777664 33221
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh-HHHHHHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP-VAIKTIA 334 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~~ 334 (1698)
.......|.++.++.++..+.+.+.++.+...- -.+....|++.++|-. -|+..+-
T Consensus 166 IrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i-d~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLERILGEERIAF-EPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred hhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 233457899999999999999999885332221 2456778999999865 4554433
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.31 E-value=6.6e-06 Score=92.84 Aligned_cols=169 Identities=15% Similarity=0.196 Sum_probs=104.3
Q ss_pred cccc--chHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHH---H---HHHHHHHHccC
Q 000302 156 EQFD--SRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVER---A---EKLRQRLKNVK 227 (1698)
Q Consensus 156 ~~~~--gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~---~---~~l~~~l~~~k 227 (1698)
+.|+ +.+..++.+.+++.......|.|+|+.|+|||+||+.+++..... ....++++. . ..+...+. +
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~--~ 90 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQADPEVLEGLE--Q 90 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHHhHHHHHhhcc--c
Confidence 3444 355677888887665566789999999999999999999887543 334455511 1 12222232 3
Q ss_pred cEEEEEcCccccc---ccc-cccCcccccccccCCCCCCeEEEEEeCchhhhh--------cccCCcceEEccCCCHHHH
Q 000302 228 RVLVILDNIWKLL---NLD-AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC--------NDMNSQKFFLIEVLSYEEA 295 (1698)
Q Consensus 228 ~~LlvlDdv~~~~---~~~-~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~--------~~~~~~~~~~l~~L~~~e~ 295 (1698)
.-+||+||++... .|. .+...+... ...+..||+||+...... ........+++.++++++.
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~------~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~ 164 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRV------REAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEK 164 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHH------HHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHH
Confidence 3489999998653 232 232222210 123447888887532110 0122246789999999999
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 000302 296 WCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIAN 335 (1698)
Q Consensus 296 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 335 (1698)
..+++..+..... .--++..+.|++.++|.|..+..+..
T Consensus 165 ~~~l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 165 IAALQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 9998876521111 12245667788889999877665543
No 48
>PRK04195 replication factor C large subunit; Provisional
Probab=98.30 E-value=3.8e-05 Score=96.24 Aligned_cols=243 Identities=15% Similarity=0.138 Sum_probs=136.3
Q ss_pred CCCcccccchHHHHHHHHHHHhc---C-CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh----HHHHHHHHHH
Q 000302 152 YTAYEQFDSRMKIFQNIMEVLKD---T-NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV----ERAEKLRQRL 223 (1698)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~l~~---~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~----~~~~~l~~~l 223 (1698)
|.....++|++..++.+.+|+.. + ..+.+.|+|+.|+||||+|+.+++... |+.+.+- .....+++.+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~ielnasd~r~~~~i~~~i 85 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEVIELNASDQRTADVIERVA 85 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCEEEEcccccccHHHHHHHH
Confidence 34456789999999999999873 1 267899999999999999999999763 4443332 1112222221
Q ss_pred H---c-----c-CcEEEEEcCcccccc------cccccCcccccccccCCCCCCeEEEEEeCch-hhhh-cccCCcceEE
Q 000302 224 K---N-----V-KRVLVILDNIWKLLN------LDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLC-NDMNSQKFFL 286 (1698)
Q Consensus 224 ~---~-----~-k~~LlvlDdv~~~~~------~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~-~v~~-~~~~~~~~~~ 286 (1698)
. . + ++-+||+|+++.... +..+...+. ..+..||+|+... .... ........+.
T Consensus 86 ~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~---------~~~~~iIli~n~~~~~~~k~Lrsr~~~I~ 156 (482)
T PRK04195 86 GEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK---------KAKQPIILTANDPYDPSLRELRNACLMIE 156 (482)
T ss_pred HHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHH---------cCCCCEEEeccCccccchhhHhccceEEE
Confidence 1 1 2 678999999977532 233322221 2234456555332 1111 0122356789
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHHhcC-CchhHHHHHHHHHcccccccCcchH
Q 000302 287 IEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNK-RLYVWNDSLERLRNSTSRQIHGMEE 365 (1698)
Q Consensus 287 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~~~~ 365 (1698)
+.+++.++....+.+.+......- -.++...|++.++|-.-.+......+... ....-..+-. +.. ...+.
T Consensus 157 f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~-~~~------~d~~~ 228 (482)
T PRK04195 157 FKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKT-LGR------RDREE 228 (482)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHH-hhc------CCCCC
Confidence 999999999888888773222111 14667889999999877665544444332 2111121211 110 11123
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhcccCCCCCCCHHHHHHHHhhcCcccccccHHHH
Q 000302 366 NVYSSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAA 423 (1698)
Q Consensus 366 ~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~ 423 (1698)
.++.++..-+..=....+...+.. ..++. +.+-.|+.+.+......++++
T Consensus 229 ~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~~~~~~~~ 278 (482)
T PRK04195 229 SIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKEYDDPEDI 278 (482)
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccccCCHHHH
Confidence 355566555542222222222221 22333 456689999987654444443
No 49
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.1e-05 Score=96.52 Aligned_cols=173 Identities=13% Similarity=0.160 Sum_probs=114.6
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc------------------------ccC
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED------------------------KLF 207 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------------~~F 207 (1698)
....+++|.+..++.|.+++..++. +.+-++|+.|+||||+|+.+++..... +.|
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 4467789999999999999987654 567899999999999999999866431 011
Q ss_pred CEEEEh--------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEE-EEEeCch
Q 000302 208 DKVVFV--------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTV-LLTSRNR 272 (1698)
Q Consensus 208 ~~~~~~--------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~ki-lvTtR~~ 272 (1698)
..++.+ +.+..+.+.+. .++.-++|||+++.. ..++.+...+-+ -..++++ ++||...
T Consensus 93 pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE-------PP~~v~FILaTtep~ 165 (700)
T PRK12323 93 VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE-------PPEHVKFILATTDPQ 165 (700)
T ss_pred CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc-------CCCCceEEEEeCChH
Confidence 123333 22233333322 256679999999876 345555554433 3345554 5555555
Q ss_pred hhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 273 DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 273 ~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
.+..........|.++.++.++..+.+++.++.+.... -.+....|++.++|.|.....+
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 55432333467899999999999999988775322222 2345678999999999755444
No 50
>PF13173 AAA_14: AAA domain
Probab=98.25 E-value=2.3e-06 Score=86.19 Aligned_cols=108 Identities=23% Similarity=0.312 Sum_probs=76.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh------HH-------HHHHHHHHHccCcEEEEEcCcccccccc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV------ER-------AEKLRQRLKNVKRVLVILDNIWKLLNLD 243 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~------~~-------~~~l~~~l~~~k~~LlvlDdv~~~~~~~ 243 (1698)
.+++.|.|+-|+||||++++++++.. ....++++ .. .+.+.+... .++.+|+||++....+|.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iDEiq~~~~~~ 77 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELIK-PGKKYIFIDEIQYLPDWE 77 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhhc-cCCcEEEEehhhhhccHH
Confidence 36899999999999999999998765 12344444 10 122222222 367899999999998888
Q ss_pred cccCcccccccccCCCCCCeEEEEEeCchhhhhc-----ccCCcceEEccCCCHHHH
Q 000302 244 AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN-----DMNSQKFFLIEVLSYEEA 295 (1698)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~-----~~~~~~~~~l~~L~~~e~ 295 (1698)
.....+.+ .....+|++|+.+...... ..+....+++.||+-.|.
T Consensus 78 ~~lk~l~d-------~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 78 DALKFLVD-------NGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHHH-------hccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 87776665 4467899999988766532 223345788999998763
No 51
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.22 E-value=1.5e-05 Score=84.65 Aligned_cols=178 Identities=20% Similarity=0.193 Sum_probs=95.0
Q ss_pred CCCcccccchHHHHHHHHHHHh-----cCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEE--hHHHHHHHHHHH
Q 000302 152 YTAYEQFDSRMKIFQNIMEVLK-----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVF--VERAEKLRQRLK 224 (1698)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~--~~~~~~l~~~l~ 224 (1698)
|....+|+|.+..++.+.-++. .....-+-+||++|+||||||..+++..... |...-= ++....+...+.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~~~sg~~i~k~~dl~~il~ 97 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FKITSGPAIEKAGDLAAILT 97 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EEEEECCC--SCHHHHHHHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eEeccchhhhhHHHHHHHHH
Confidence 3456789999988887655544 2346678899999999999999999987643 321110 122222333222
Q ss_pred c-cCcEEEEEcCccccc--ccccccCcccc-cccccCCCCC-----------CeEEEEEeCchhhhhcccCC--cceEEc
Q 000302 225 N-VKRVLVILDNIWKLL--NLDAVGIPFGD-VKKERNDDRS-----------RCTVLLTSRNRDVLCNDMNS--QKFFLI 287 (1698)
Q Consensus 225 ~-~k~~LlvlDdv~~~~--~~~~~~~~~~~-~~~~~~~~~~-----------g~kilvTtR~~~v~~~~~~~--~~~~~l 287 (1698)
. +++-+|.+|++..-. +-+.+..+.-+ .++...+.+. =+-|=.|||...+... ... ....++
T Consensus 98 ~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~p-LrdRFgi~~~l 176 (233)
T PF05496_consen 98 NLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSP-LRDRFGIVLRL 176 (233)
T ss_dssp T--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHC-CCTTSSEEEE-
T ss_pred hcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchh-HHhhcceecch
Confidence 2 356688889996641 11111100000 0000001111 2345578888655442 222 345689
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 288 EVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 288 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
+.-+.+|-.++.++.++.-.. +--++.+.+||+++.|-|--+.-+
T Consensus 177 ~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 177 EFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp ---THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHHHH
Confidence 999999999999988853221 223577999999999999654433
No 52
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3e-05 Score=93.30 Aligned_cols=173 Identities=14% Similarity=0.162 Sum_probs=111.8
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc--------------------ccCCEE-
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKV- 210 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~- 210 (1698)
....+++|.+..++.+.+++..++. +.+.++|+.|+||||+|+.+++..... .+.|..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~ 92 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIE 92 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEE
Confidence 3456789999999999999886654 578999999999999999999876321 112222
Q ss_pred ------EEhHHHHHHHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeCch-hhhhc
Q 000302 211 ------VFVERAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCN 277 (1698)
Q Consensus 211 ------~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~-~v~~~ 277 (1698)
..++....+.+.+. .+++-++|+|++.... .++.+...+.+ .....++|++|.+. .+...
T Consensus 93 ~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe-------~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 93 IDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE-------PPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred ecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc-------CCCCeEEEEEcCChHhhhHH
Confidence 11233334444332 1356699999997764 35555444443 34466666666443 33321
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
..+....+++.+++.++..+.+.+.+...... --++.+..|++.++|-|-.+...
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~-i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESID-TDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22335689999999999988888866321111 12456778999999988654433
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.19 E-value=1.4e-06 Score=107.61 Aligned_cols=142 Identities=25% Similarity=0.316 Sum_probs=67.4
Q ss_pred ceeEEEecCCCcccCCccccCCCcccEEEccCccCCCc-cccccccccceeecCCCCCCccchHhhccccccEecccCcc
Q 000302 531 ELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDV-AIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCR 609 (1698)
Q Consensus 531 ~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~ 609 (1698)
+|+.|++++|.+..+|..++.+++|+.|++++|.+..+ ...+.+.+|+.|++++|.+..+|..++.+..|+.|.++++.
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 45555555555555544455555555555555555543 22235555555555555555555554445555555555542
Q ss_pred cccccCchhhccCccCceecccCcccccccccCCCccchhhhCCCCCCCEEEEEeccccccchhhhhhccceeE
Q 000302 610 RLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMPQDLISMKLEIFR 683 (1698)
Q Consensus 610 ~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~ 683 (1698)
...++.. +.++.++..|.+.++... ..+..++.+..++.|+++.+.+..++......+++.+.
T Consensus 221 -~~~~~~~-~~~~~~l~~l~l~~n~~~---------~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~ 283 (394)
T COG4886 221 -IIELLSS-LSNLKNLSGLELSNNKLE---------DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELD 283 (394)
T ss_pred -ceecchh-hhhcccccccccCCceee---------eccchhccccccceeccccccccccccccccCccCEEe
Confidence 2223322 445555555544433321 11334455555555665555555444422333444433
No 54
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=6.2e-05 Score=92.80 Aligned_cols=172 Identities=13% Similarity=0.171 Sum_probs=112.8
Q ss_pred CCcccccchHHHHHHHHHHHhcCC-ceEEEEEcCCCchHHHHHHHHHHHHhhc--------------------ccCCEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVV 211 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 211 (1698)
.....++|.+...+.+.+++..++ .+.+.++|+.|+||||+|+.+++..... .+.|. +
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv-i 90 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL-I 90 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce-E
Confidence 446788999999999999998665 4688999999999999999998865321 12222 2
Q ss_pred Eh--------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEeCch-hhhh
Q 000302 212 FV--------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLC 276 (1698)
Q Consensus 212 ~~--------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~-~v~~ 276 (1698)
.+ +.+..+..... .+++-++|+|++... ...+.+...+.+ ...+.++|++|.+. .+..
T Consensus 91 EIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-------PP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 91 EIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-------PPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred EecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-------CCCCcEEEEEECChHhhhH
Confidence 22 22223333221 256679999999876 234445444433 33456777666543 3322
Q ss_pred cccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 277 NDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 277 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
........+.+++++.++..+.+.+.+......- -.+....|++.++|-+..+...
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i-d~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA-DQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 1234467899999999999999888774322221 2455778999999988655443
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.18 E-value=1.6e-06 Score=107.22 Aligned_cols=174 Identities=24% Similarity=0.344 Sum_probs=146.0
Q ss_pred CeEEEECCCCCCCCCCcccCCC--CeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEc
Q 000302 483 DSIAISLPNRDIDELPERLECP--KLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSL 560 (1698)
Q Consensus 483 ~~~~lsl~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L 560 (1698)
....+.+..+.+..++...... +|+.|.+..+ .+..+|.. ...++.|+.|++++|.+..+|...+.+..|+.|++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N--~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN--KIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccccCccccccchhhccccccccc--chhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 4678889999999998877654 8999999988 55556433 47899999999999999999998889999999999
Q ss_pred cCccCCCc-cccccccccceeecCCCCCCccchHhhccccccEecccCcccccccCchhhccCccCceecccCccccccc
Q 000302 561 EGCQVGDV-AIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEK 639 (1698)
Q Consensus 561 ~~~~l~~~-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 639 (1698)
++|.+..+ ..++.+.+|++|.+++|.+.+.|..++++.++..|.+.++ .+..++.. ++++.+|+.|++++|.+.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~-~~~l~~l~~L~~s~n~i~--- 268 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPES-IGNLSNLETLDLSNNQIS--- 268 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccch-hccccccceecccccccc---
Confidence 99999975 5557888899999999988889999999999999998888 56665555 899999999999998774
Q ss_pred ccCCCccchhhhCCCCCCCEEEEEeccccccc
Q 000302 640 VEGGSNASLVELKGLSKLTTLEIHIRDARIMP 671 (1698)
Q Consensus 640 ~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 671 (1698)
.+..++.+.+|+.|+++.+.....+
T Consensus 269 -------~i~~~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 269 -------SISSLGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred -------ccccccccCccCEEeccCccccccc
Confidence 2333889999999999988765443
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=1.8e-05 Score=100.43 Aligned_cols=174 Identities=14% Similarity=0.201 Sum_probs=114.7
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhcc-------------------cCCEEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK-------------------LFDKVVF 212 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~~ 212 (1698)
.....++|.+..++.|.+++..+++ +.+.++|+.|+||||+|+.+++...... .|..+++
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 3457789999999999999987665 4568999999999999999998764321 1222233
Q ss_pred h--------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEe-Cchhhhhc
Q 000302 213 V--------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTS-RNRDVLCN 277 (1698)
Q Consensus 213 ~--------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTt-R~~~v~~~ 277 (1698)
+ +.+..+.+.+. .+++-++|||++... ...+.+...+-+ .....++|++| ....+...
T Consensus 93 idAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-------PP~~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 93 VDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-------PPEHVKFLLATTDPQKLPVT 165 (944)
T ss_pred eccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-------cCCCeEEEEECCCchhchHH
Confidence 3 22233333332 357779999999876 345555444433 23455555544 44444422
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 334 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 334 (1698)
.......|++++|+.++..+.+.+.+...... --.+.+..|++.++|.|--+..+.
T Consensus 166 IlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~-~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 166 VLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP-FEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred HHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 23345789999999999999998877432211 224567889999999997555443
No 57
>PRK09087 hypothetical protein; Validated
Probab=98.17 E-value=1.5e-05 Score=88.34 Aligned_cols=142 Identities=15% Similarity=0.059 Sum_probs=88.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHHH---HHHHHHHHccCcEEEEEcCccccc-ccccccCccccc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVERA---EKLRQRLKNVKRVLVILDNIWKLL-NLDAVGIPFGDV 252 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~~---~~l~~~l~~~k~~LlvlDdv~~~~-~~~~~~~~~~~~ 252 (1698)
.+.+.|||+.|+|||+|++.+++.... .++... ......+. .-+|++||+.... +-+.+...+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~~~~~~~~~~~~---~~~l~iDDi~~~~~~~~~lf~l~n~- 112 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPNEIGSDAANAAA---EGPVLIEDIDAGGFDETGLFHLINS- 112 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHHHcchHHHHhhh---cCeEEEECCCCCCCCHHHHHHHHHH-
Confidence 467999999999999999998876432 133221 12222332 2378889996431 11122221111
Q ss_pred ccccCCCCCCeEEEEEeCch---------hhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHh
Q 000302 253 KKERNDDRSRCTVLLTSRNR---------DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRC 323 (1698)
Q Consensus 253 ~~~~~~~~~g~kilvTtR~~---------~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c 323 (1698)
. ...|..||+|++.. +... .+.....++++++++++-.+++++++....- .--+++..-|++.+
T Consensus 113 ---~--~~~g~~ilits~~~p~~~~~~~~dL~S-Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~-~l~~ev~~~La~~~ 185 (226)
T PRK09087 113 ---V--RQAGTSLLMTSRLWPSSWNVKLPDLKS-RLKAATVVEIGEPDDALLSQVIFKLFADRQL-YVDPHVVYYLVSRM 185 (226)
T ss_pred ---H--HhCCCeEEEECCCChHHhccccccHHH-HHhCCceeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHh
Confidence 0 23467799988742 2222 3455679999999999999999999853211 12256788888888
Q ss_pred CCChHHHHHHHHH
Q 000302 324 GGLPVAIKTIANA 336 (1698)
Q Consensus 324 ~GlPlai~~~~~~ 336 (1698)
.|-.-++..+-..
T Consensus 186 ~r~~~~l~~~l~~ 198 (226)
T PRK09087 186 ERSLFAAQTIVDR 198 (226)
T ss_pred hhhHHHHHHHHHH
Confidence 8877766643333
No 58
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.1e-05 Score=97.39 Aligned_cols=171 Identities=16% Similarity=0.199 Sum_probs=111.9
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhcccCC------------------EEEEh
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD------------------KVVFV 213 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~------------------~~~~~ 213 (1698)
....+++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+++.....+.+. .+.++
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el 90 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEI 90 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEe
Confidence 3456789999999999999886654 5679999999999999999998775322111 12222
Q ss_pred --------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEe-Cchhhhhcc
Q 000302 214 --------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTS-RNRDVLCND 278 (1698)
Q Consensus 214 --------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTt-R~~~v~~~~ 278 (1698)
+.+..+++.+. .+++-++|+|+++.. ..++.+...+.+ ....+.+|++| +...+....
T Consensus 91 ~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe-------p~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 91 DAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE-------PPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh-------CCCCEEEEEEcCChhhCChHH
Confidence 22333444333 146779999999765 335555444443 33445555544 444443212
Q ss_pred cCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000302 279 MNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 331 (1698)
Q Consensus 279 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 331 (1698)
......+++.++++++..+.+.+.+....... -++.+..|++.++|.+--+.
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 33456899999999999999998773222111 24567889999999886543
No 59
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.15 E-value=3.8e-05 Score=86.22 Aligned_cols=168 Identities=13% Similarity=0.157 Sum_probs=102.5
Q ss_pred cccc-c-hHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh--HH----HHHHHHHHHccC
Q 000302 156 EQFD-S-RMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV--ER----AEKLRQRLKNVK 227 (1698)
Q Consensus 156 ~~~~-g-r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~--~~----~~~l~~~l~~~k 227 (1698)
+.|+ | -...+..+.++......+.+.|+|+.|+|||+|++.+++..... -..+.++ +. ...+.+.+. +
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~~~~~~~~~~~--~ 97 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAWFVPEVLEGME--Q 97 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhhhhHHHHHHhh--h
Confidence 3444 4 33455566565555555789999999999999999999877643 2334444 11 122333332 2
Q ss_pred cEEEEEcCcccc---ccccccc-CcccccccccCCCCCC-eEEEEEeCchhh---------hhcccCCcceEEccCCCHH
Q 000302 228 RVLVILDNIWKL---LNLDAVG-IPFGDVKKERNDDRSR-CTVLLTSRNRDV---------LCNDMNSQKFFLIEVLSYE 293 (1698)
Q Consensus 228 ~~LlvlDdv~~~---~~~~~~~-~~~~~~~~~~~~~~~g-~kilvTtR~~~v---------~~~~~~~~~~~~l~~L~~~ 293 (1698)
--++++||+... .+|+... ..+... ...| .++|+||+...- .. .+...-++++++++++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~------~e~g~~~li~ts~~~p~~l~~~~~~L~S-Rl~~g~~~~l~~~~~~ 170 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRI------LESGRTRLLITGDRPPRQLNLGLPDLAS-RLDWGQIYKLQPLSDE 170 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHH------HHcCCCeEEEeCCCChHHcCcccHHHHH-HHhCCceeeecCCCHH
Confidence 248899999664 3343221 112110 1123 478999876522 22 3445579999999999
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 000302 294 EAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIAN 335 (1698)
Q Consensus 294 e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 335 (1698)
+-.+.+++++.... -.--+++..-|++.+.|-.-++..+-.
T Consensus 171 ~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 171 EKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 99999988774221 122267788899999887665554433
No 60
>PLN03025 replication factor C subunit; Provisional
Probab=98.14 E-value=1.8e-05 Score=93.63 Aligned_cols=170 Identities=15% Similarity=0.144 Sum_probs=105.7
Q ss_pred CCcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCE-EEEh-----HHHHHHHHHHH--
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK-VVFV-----ERAEKLRQRLK-- 224 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~~~-----~~~~~l~~~l~-- 224 (1698)
....+++|.+..++.+.+++..+..+-+-++|+.|+||||+|+.+++..... .|.. ++-+ ...+.+++.++
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~~vr~~i~~~ 88 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGIDVVRNKIKMF 88 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHHHHHHHHHHH
Confidence 4456788999889999888887666667899999999999999999876322 1221 1111 11223333322
Q ss_pred --------ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeCc-hhhhhcccCCcceEEccCCCHH
Q 000302 225 --------NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN-RDVLCNDMNSQKFFLIEVLSYE 293 (1698)
Q Consensus 225 --------~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~-~~v~~~~~~~~~~~~l~~L~~~ 293 (1698)
.++.-++|+|+++... ..+.+...+.. ....+++++++.. ..+..........+++++++++
T Consensus 89 ~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-------~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~ 161 (319)
T PLN03025 89 AQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEI-------YSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQ 161 (319)
T ss_pred HhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhc-------ccCCceEEEEeCCccccchhHHHhhhcccCCCCCHH
Confidence 1356699999998762 22223222221 2345667666643 2222111223458899999999
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000302 294 EAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 331 (1698)
Q Consensus 294 e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 331 (1698)
+....+.+.+..+...- -.+....|++.++|-.-.+.
T Consensus 162 ~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 162 EILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 99999988874322111 14567889999998764433
No 61
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.12 E-value=5.5e-05 Score=99.92 Aligned_cols=237 Identities=15% Similarity=0.223 Sum_probs=146.0
Q ss_pred ccchHHHHHHHHHHHh---cCCceEEEEEcCCCchHHHHHHHHHHHHhhc-c-----cCCE-------EEEh--------
Q 000302 158 FDSRMKIFQNIMEVLK---DTNVGMIGVYGVNGVGKTTLVKQIAMQVIED-K-----LFDK-------VVFV-------- 213 (1698)
Q Consensus 158 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~-----~F~~-------~~~~-------- 213 (1698)
++||+.+++.|...+. .+...|+.+.|..|||||+++++|.+....+ + .|+. ..|+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6899999999999887 4556799999999999999999999876543 1 1221 1111
Q ss_pred ------------------------------------------------------HH-----HHHHHHHHHccCcEEEEEc
Q 000302 214 ------------------------------------------------------ER-----AEKLRQRLKNVKRVLVILD 234 (1698)
Q Consensus 214 ------------------------------------------------------~~-----~~~l~~~l~~~k~~LlvlD 234 (1698)
.+ ...++....+.|+..+|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 00 1123333344679999999
Q ss_pred Cc-cccc-ccccccCcccccccccCCC--CCCeEEEEEeCch-hhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCC
Q 000302 235 NI-WKLL-NLDAVGIPFGDVKKERNDD--RSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKA 309 (1698)
Q Consensus 235 dv-~~~~-~~~~~~~~~~~~~~~~~~~--~~g~kilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 309 (1698)
|+ |-+. .++-+...... ...+. .+-.-.+.|.+.. ............+.|.||+..+.-.+.....+...
T Consensus 162 DlhWaD~~SL~lL~~lm~~---~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~-- 236 (849)
T COG3899 162 DLHWADSASLKLLQLLMDR---IAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK-- 236 (849)
T ss_pred cccccChhHHHHHHHHHHh---cchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--
Confidence 99 4431 11111111111 00000 0011122333332 11221233457999999999999999999987532
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHHHHHhcCCc------hh-HHHHHHHHHcccccccCcchHHHHHHHHHHHhcCCchH
Q 000302 310 SDFRVIADEIVRRCGGLPVAIKTIANALKNKRL------YV-WNDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEE 382 (1698)
Q Consensus 310 ~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~------~~-w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~ 382 (1698)
....+....|.++..|+|+-+..+-..+..... .. |+.-...+.. ....+. +...+..-.+.||..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~-vv~~l~~rl~kL~~~- 309 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDA-VVEFLAARLQKLPGT- 309 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHH-HHHHHHHHHhcCCHH-
Confidence 223567889999999999999999888866421 11 5432222111 111222 555688889999988
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHH
Q 000302 383 EKSMFRLCALRKDGSPIPIDDLMRYG 408 (1698)
Q Consensus 383 lk~cfl~~s~fp~~~~i~~~~li~~w 408 (1698)
.+......|.+. ..|+...|...|
T Consensus 310 t~~Vl~~AA~iG--~~F~l~~La~l~ 333 (849)
T COG3899 310 TREVLKAAACIG--NRFDLDTLAALA 333 (849)
T ss_pred HHHHHHHHHHhC--ccCCHHHHHHHH
Confidence 588888888886 555565665554
No 62
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.12 E-value=2.7e-06 Score=97.16 Aligned_cols=260 Identities=23% Similarity=0.242 Sum_probs=164.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh----------------------------HHHHHHHHHHHccCc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV----------------------------ERAEKLRQRLKNVKR 228 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~----------------------------~~~~~l~~~l~~~k~ 228 (1698)
.+.+.++|.|||||||++-++.. .+ ..|..-+|+ .....+..++. ++|
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~-~rr 89 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIG-DRR 89 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHh-hhh
Confidence 47899999999999999999998 43 235544433 12335556665 799
Q ss_pred EEEEEcCcccccc-cccccCcccccccccCCCCCCeEEEEEeCchhhhhcccCCcceEEccCCCHH-HHHHHHHHHhCC-
Q 000302 229 VLVILDNIWKLLN-LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFFLIEVLSYE-EAWCLFEKIVGD- 305 (1698)
Q Consensus 229 ~LlvlDdv~~~~~-~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~- 305 (1698)
.++|+||-.+..+ -..+.-.+-. +...-.|+.|+|..-. ......+.+.+|+.- ++.++|...+..
T Consensus 90 ~llvldncehl~~~~a~~i~all~-------~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~ 158 (414)
T COG3903 90 ALLVLDNCEHLLDACAALIVALLG-------ACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLV 158 (414)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHc-------cchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHh
Confidence 9999999876522 1111111111 3444568888887642 345667788888875 789999888731
Q ss_pred ---CCCCCchHHHHHHHHHHhCCChHHHHHHHHHHhcCCchh----HHHHHHHHHcccccccCcchHHHHHHHHHHHhcC
Q 000302 306 ---SAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYV----WNDSLERLRNSTSRQIHGMEENVYSSIELSYSFL 378 (1698)
Q Consensus 306 ---~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~----w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L 378 (1698)
-.-...-.....+|.++..|.|++|...++..+.-...+ ..+-.+.+..- .....--++...+.+.+||.-|
T Consensus 159 ~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lL 237 (414)
T COG3903 159 ALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALL 237 (414)
T ss_pred ccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhh
Confidence 112223356678999999999999999999988765543 11111112111 1111122344678999999999
Q ss_pred CchHHHHHHHHhcccCCCCCCCHHHHHHHHhhcCccc--ccccHHHHHHHHHHHHHHHHhccccccCC---CCeEEEchH
Q 000302 379 KSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFS--NVRTSEAARNRVYTLVDNLKASSLLLDGD---KDEVKLHDI 453 (1698)
Q Consensus 379 ~~~~lk~cfl~~s~fp~~~~i~~~~li~~w~~~g~~~--~~~~~~~~~~~~~~~~~~L~~~~ll~~~~---~~~~~mhdl 453 (1698)
...+ +..|.-++.|...+... ...|.+.|-.. +.+. ....+..+++.+++-..+ ...|+.-+.
T Consensus 238 tgwe-~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~-------~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT 305 (414)
T COG3903 238 TGWE-RALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYL-------VLLALTLLVDKSLVVALDLLGRARYRLLET 305 (414)
T ss_pred hhHH-HHHhcchhhhhhhhccc----HHHHHhcCCccccchHH-------HHHHHHHHhhccchhhhhhhhHHHHHHHHH
Confidence 9885 88899999998555433 23455444321 1111 112356677888764322 256777777
Q ss_pred HHHHHHHHhcc
Q 000302 454 IYAVAVSIARD 464 (1698)
Q Consensus 454 v~~~a~~~~~~ 464 (1698)
+|.|+..+..+
T Consensus 306 ~r~YalaeL~r 316 (414)
T COG3903 306 GRRYALAELHR 316 (414)
T ss_pred HHHHHHHHHHh
Confidence 88888776555
No 63
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=4.9e-05 Score=89.88 Aligned_cols=165 Identities=15% Similarity=0.195 Sum_probs=113.6
Q ss_pred ccccchHHHHHHHHHHHhcCC-ceEEEEEcCCCchHHHHHHHHHHHHh----hcccCCEEEEh---------HHHHHHHH
Q 000302 156 EQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVI----EDKLFDKVVFV---------ERAEKLRQ 221 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~~~---------~~~~~l~~ 221 (1698)
..++|.+..++.+.+++..+. .+.+.++|+.|+||||+|+.++.... ...|+|...|. +.+..+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~ 83 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIE 83 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHH
Confidence 467899999999999998655 46779999999999999999998653 23567776664 22333333
Q ss_pred HHH----ccCcEEEEEcCccc--ccccccccCcccccccccCCCCCCeEEEEEeCchhhhh-cccCCcceEEccCCCHHH
Q 000302 222 RLK----NVKRVLVILDNIWK--LLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC-NDMNSQKFFLIEVLSYEE 294 (1698)
Q Consensus 222 ~l~----~~k~~LlvlDdv~~--~~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~-~~~~~~~~~~l~~L~~~e 294 (1698)
.+. .+++-++|+|+++. ...++.+...+.+ ...++.+|++|.+.+..- ........+.+.++++++
T Consensus 84 ~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe-------pp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~ 156 (313)
T PRK05564 84 EVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE-------PPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEE 156 (313)
T ss_pred HHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcC-------CCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHH
Confidence 222 24555667776644 3567777777766 567888888887654321 112335689999999999
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000302 295 AWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 332 (1698)
Q Consensus 295 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 332 (1698)
....+.+.... . -++.+..++..++|.|..+..
T Consensus 157 ~~~~l~~~~~~-~----~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 157 IEKFISYKYND-I----KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred HHHHHHHHhcC-C----CHHHHHHHHHHcCCCHHHHHH
Confidence 98887766531 1 133467789999998875543
No 64
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=4.8e-05 Score=93.38 Aligned_cols=177 Identities=17% Similarity=0.209 Sum_probs=109.6
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhcc--------------------cCCEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK--------------------LFDKVV 211 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~ 211 (1698)
.....++|.+..+..+..++..+.. +.+-++|+.|+||||+|+.+++...... +.+...
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 3456789999888888888887665 5688999999999999999998754311 122222
Q ss_pred Eh-------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEeCc-hhhhhc
Q 000302 212 FV-------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRN-RDVLCN 277 (1698)
Q Consensus 212 ~~-------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~-~~v~~~ 277 (1698)
+- +.+..+.+... .+++-++|+|+++.. ...+.+...+.+ ......+|++|.+ ..+...
T Consensus 91 l~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-------p~~~vv~Ilattn~~kl~~~ 163 (472)
T PRK14962 91 LDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-------PPSHVVFVLATTNLEKVPPT 163 (472)
T ss_pred EeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-------CCCcEEEEEEeCChHhhhHH
Confidence 21 12223333322 146679999999765 233444333332 2234444444433 344332
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCC-ChHHHHHHHHHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGG-LPVAIKTIANAL 337 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~~~~~l 337 (1698)
.......+.+.+++.++....+++.+...... --++....|++.++| ++.|+..+..+.
T Consensus 164 L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~-i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 164 IISRCQVIEFRNISDELIIKRLQEVAEAEGIE-IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred HhcCcEEEEECCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 23345688999999999988888877321111 124567788888765 566766666544
No 65
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=2.8e-05 Score=93.30 Aligned_cols=169 Identities=15% Similarity=0.145 Sum_probs=111.2
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhcc--------------------cCCEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK--------------------LFDKVV 211 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~ 211 (1698)
....+++|.+..+..|..++..+.+ +.+.++|+.|+||||+|+.+++...... +.+. +
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dv-i 93 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDV-L 93 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccc-e
Confidence 4467789999999999999987765 4689999999999999999998654321 1111 1
Q ss_pred Eh--------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEE-EEeCchhhhh
Q 000302 212 FV--------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVL-LTSRNRDVLC 276 (1698)
Q Consensus 212 ~~--------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kil-vTtR~~~v~~ 276 (1698)
.+ +.+..+++.+. .+++-++|+|++... ..++.+...+-+ ......+| .||....+..
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-------Pp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-------PPAHIVFILATTEFHKIPE 166 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-------CCCceEEEeecCChhhccH
Confidence 11 22233333332 246679999999876 346666544433 23445544 4555455543
Q ss_pred cccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHH
Q 000302 277 NDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 330 (1698)
Q Consensus 277 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 330 (1698)
........|.+.+++.++..+.+.+.+..+...- -++....|++.++|-+.-+
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~-e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY-DQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCChHHHH
Confidence 2233456799999999999888888774222111 2456788999999988543
No 66
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.08 E-value=4.2e-05 Score=92.37 Aligned_cols=174 Identities=15% Similarity=0.163 Sum_probs=106.8
Q ss_pred CCcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCC-EEEEhH-----------------
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD-KVVFVE----------------- 214 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~~~~----------------- 214 (1698)
.....++|++..++.+..++..+..+.+.++|+.|+||||+|+.+++...... +. ..+.+.
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-WENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-cccceEEechhhhhhcchhhhhcCcc
Confidence 34567899999999999999877666788999999999999999998764221 11 111110
Q ss_pred --------------HHHHHHHHHH--------ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeC
Q 000302 215 --------------RAEKLRQRLK--------NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSR 270 (1698)
Q Consensus 215 --------------~~~~l~~~l~--------~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR 270 (1698)
..+.++..++ .+.+-+||+||+.... ..+.+...+.. ....+++|+||.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~-------~~~~~~~Il~~~ 163 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ-------YSRTCRFIIATR 163 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh-------ccCCCeEEEEeC
Confidence 0111222111 1234589999996552 12223222222 234567777764
Q ss_pred ch-hhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 000302 271 NR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIAN 335 (1698)
Q Consensus 271 ~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 335 (1698)
.. .+..........+.+.+++.++....+.+.+...... --.+.+..+++.++|.+-.+.....
T Consensus 164 ~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 164 QPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred ChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 43 2222112234578899999999999988876422211 1256678899999998766554333
No 67
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=5.5e-05 Score=89.82 Aligned_cols=170 Identities=13% Similarity=0.069 Sum_probs=111.8
Q ss_pred CCCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc--------------------------
Q 000302 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED-------------------------- 204 (1698)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------------- 204 (1698)
|.....++|.+..++.+.+++..+.. ..+-++|+.|+||+|+|..+++..-.+
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 44566789999999999999987664 478999999999999999998765321
Q ss_pred ----ccCCEE----------------EEhHHHHHHHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCC
Q 000302 205 ----KLFDKV----------------VFVERAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERND 258 (1698)
Q Consensus 205 ----~~F~~~----------------~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~ 258 (1698)
.|-|.. |-|+.+..+.+.+. .+++-++|+||+.... ..+.+...+..
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe------- 167 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE------- 167 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc-------
Confidence 122211 11223333333332 2567799999997763 34455444433
Q ss_pred CCCCeEEEEEeCch-hhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 259 DRSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 259 ~~~g~kilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
...++.+|++|.+. .+..........+.+.+++.++..+.+.+..+.. + ......+++.++|.|.....+
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C--HHHHHHHHHHcCCCHHHHHHH
Confidence 33466677766655 3332123346789999999999999998865321 1 122267899999999865544
No 68
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=6.7e-05 Score=89.84 Aligned_cols=166 Identities=14% Similarity=0.119 Sum_probs=109.5
Q ss_pred cccccchHHHHHHHHHHHhcCC----------ceEEEEEcCCCchHHHHHHHHHHHHhh-------------------cc
Q 000302 155 YEQFDSRMKIFQNIMEVLKDTN----------VGMIGVYGVNGVGKTTLVKQIAMQVIE-------------------DK 205 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~ 205 (1698)
...++|.+..++.+.+++..+. .+.+-++|+.|+||||+|..++...-. ..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 3567899999999999998653 467889999999999999999875422 13
Q ss_pred cCCEEEE--------hHHHHHHHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeCc
Q 000302 206 LFDKVVF--------VERAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN 271 (1698)
Q Consensus 206 ~F~~~~~--------~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~ 271 (1698)
|.|..+. ++.+..+.+.+. .+++-++|+|++.... ..+.+...+.+ ...++.+|++|.+
T Consensus 84 hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe-------p~~~~~fIL~a~~ 156 (394)
T PRK07940 84 HPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE-------PPPRTVWLLCAPS 156 (394)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc-------CCCCCeEEEEECC
Confidence 4444332 233444444443 2455688889998762 33444433333 3345555555554
Q ss_pred -hhhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 272 -RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 272 -~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
..+..........+.+.+++.++..+.+.+..|. ..+.+..+++.++|-|.....+
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~------~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV------DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC------CHHHHHHHHHHcCCCHHHHHHH
Confidence 4444322334578999999999999888765431 1345778999999999765444
No 69
>PRK08727 hypothetical protein; Validated
Probab=98.06 E-value=4.4e-05 Score=85.61 Aligned_cols=167 Identities=14% Similarity=0.156 Sum_probs=97.9
Q ss_pred cccccchH-HHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh---HHHHHHHHHHHc-cCcE
Q 000302 155 YEQFDSRM-KIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV---ERAEKLRQRLKN-VKRV 229 (1698)
Q Consensus 155 ~~~~~gr~-~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~---~~~~~l~~~l~~-~k~~ 229 (1698)
.+.|++.. ..+..+...........+.|+|..|+|||+|++.+++.....+ ..++++ +....+.+.+.. .+.-
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~--~~~~y~~~~~~~~~~~~~~~~l~~~d 95 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG--RSSAYLPLQAAAGRLRDALEALEGRS 95 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEeHHHhhhhHHHHHHHHhcCC
Confidence 44555433 3344433333333345799999999999999999998866442 344454 222222222221 2445
Q ss_pred EEEEcCccccc---ccccccCcccccccccCCCCCCeEEEEEeCchh---------hhhcccCCcceEEccCCCHHHHHH
Q 000302 230 LVILDNIWKLL---NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD---------VLCNDMNSQKFFLIEVLSYEEAWC 297 (1698)
Q Consensus 230 LlvlDdv~~~~---~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~---------v~~~~~~~~~~~~l~~L~~~e~~~ 297 (1698)
+||+||+.... .|......+-+ .. ...|..||+|++... +.. .+.....+++++++.++-.+
T Consensus 96 lLiIDDi~~l~~~~~~~~~lf~l~n---~~--~~~~~~vI~ts~~~p~~l~~~~~dL~S-Rl~~~~~~~l~~~~~e~~~~ 169 (233)
T PRK08727 96 LVALDGLESIAGQREDEVALFDFHN---RA--RAAGITLLYTARQMPDGLALVLPDLRS-RLAQCIRIGLPVLDDVARAA 169 (233)
T ss_pred EEEEeCcccccCChHHHHHHHHHHH---HH--HHcCCeEEEECCCChhhhhhhhHHHHH-HHhcCceEEecCCCHHHHHH
Confidence 99999997542 23221111111 00 124667999998532 111 23335688999999999999
Q ss_pred HHHHHhCCCCCCCchHHHHHHHHHHhCCChHHH
Q 000302 298 LFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 330 (1698)
Q Consensus 298 Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 330 (1698)
++++++....- .--+++...|++.++|-.-++
T Consensus 170 iL~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 170 VLRERAQRRGL-ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHH
Confidence 99997742111 122566778888888765544
No 70
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.06 E-value=3.3e-05 Score=99.24 Aligned_cols=165 Identities=23% Similarity=0.302 Sum_probs=100.7
Q ss_pred CCcccccchHHHHH---HHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-HHH-------HHHHH
Q 000302 153 TAYEQFDSRMKIFQ---NIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV-ERA-------EKLRQ 221 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~-~~~-------~~l~~ 221 (1698)
...++|+|++..+. .+.+++..+....+.++|++|+||||+|+.+++.... .|...--+ ... .....
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~~lna~~~~i~dir~~i~~a~~ 102 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFSSLNAVLAGVKDLRAEVDRAKE 102 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--cceeehhhhhhhHHHHHHHHHHHH
Confidence 44567899887774 5666777777777899999999999999999987642 34221111 111 11212
Q ss_pred HHHc-cCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEE--eCchh--hhhcccCCcceEEccCCCHHH
Q 000302 222 RLKN-VKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLT--SRNRD--VLCNDMNSQKFFLIEVLSYEE 294 (1698)
Q Consensus 222 ~l~~-~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvT--tR~~~--v~~~~~~~~~~~~l~~L~~~e 294 (1698)
.+.. +++.++||||++.- ..++.+... -..|+.++++ |++.. +..........+.+++++.++
T Consensus 103 ~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~----------lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~ed 172 (725)
T PRK13341 103 RLERHGKRTILFIDEVHRFNKAQQDALLPW----------VENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDED 172 (725)
T ss_pred HhhhcCCceEEEEeChhhCCHHHHHHHHHH----------hcCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHH
Confidence 2221 46779999999754 334444322 2345555553 44431 211112235689999999999
Q ss_pred HHHHHHHHhCC------CCCCCchHHHHHHHHHHhCCChHH
Q 000302 295 AWCLFEKIVGD------SAKASDFRVIADEIVRRCGGLPVA 329 (1698)
Q Consensus 295 ~~~Lf~~~~~~------~~~~~~~~~~~~~i~~~c~GlPla 329 (1698)
...++++.+.+ .....--++....|++.+.|..-.
T Consensus 173 i~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 173 LHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred HHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 99999887631 111112245667888888886543
No 71
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.1e-06 Score=99.41 Aligned_cols=184 Identities=21% Similarity=0.172 Sum_probs=115.7
Q ss_pred eEEEECCCCCCCCCC---cccCCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCcc--ccCCCcccEE
Q 000302 484 SIAISLPNRDIDELP---ERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSS--LVCLISLRTL 558 (1698)
Q Consensus 484 ~~~lsl~~~~~~~l~---~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~--i~~L~~Lr~L 558 (1698)
.+.++|.++.+...+ ..-.|+++|.|+++.|-......-..+...+++|+.|+|+.|.+...-++ -..+.||+.|
T Consensus 123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L 202 (505)
T KOG3207|consen 123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQL 202 (505)
T ss_pred hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheE
Confidence 356667666665554 23468899999998873333333445667789999999998877543222 1256788999
Q ss_pred EccCccCC--Cc-cccccccccceeecCCC-CCCccchHhhccccccEecccCcccccccC-chhhccCccCceecccCc
Q 000302 559 SLEGCQVG--DV-AIVGQLKKLEILSFRNS-DIQQLPREIGQLVQLRLLDLRNCRRLQAIA-PNVISKLSRLEELYMGDS 633 (1698)
Q Consensus 559 ~L~~~~l~--~~-~~i~~L~~L~~L~Ls~~-~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp-~~~i~~L~~L~~L~l~~~ 633 (1698)
.|++|.++ ++ ......+.|+.|+|.+| .+..--.+...+..|+.|||++|. +...+ -..++.|+.|+.|+++.+
T Consensus 203 ~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 203 VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhcccc
Confidence 99999887 23 44556778888888887 333323344557788888888884 44444 112678888888888777
Q ss_pred ccccccccCCCccchhhhCCCCCCCEEEEEecccccc
Q 000302 634 FSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIM 670 (1698)
Q Consensus 634 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~ 670 (1698)
.+.- ...-+.........+.+|+.|.+..|.+...
T Consensus 282 gi~s--i~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 282 GIAS--IAEPDVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred Ccch--hcCCCccchhhhcccccceeeecccCccccc
Confidence 6530 0001111122234556677777776666433
No 72
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.05 E-value=0.00065 Score=86.94 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=41.5
Q ss_pred CcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
..+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++..+
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 3456889999999888888766667899999999999999999987664
No 73
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=5.4e-08 Score=115.55 Aligned_cols=180 Identities=22% Similarity=0.240 Sum_probs=134.9
Q ss_pred CCcCCeEEEECCCCCCCCCCcccCC-CCeEEEEEecccCC--------CCccChhhhccCCceeEEEecCCCcccCCccc
Q 000302 479 KTQKDSIAISLPNRDIDELPERLEC-PKLSLFLLFAKYDS--------SLKIPDLFFEGMNELRVVHFTRTCFLSLPSSL 549 (1698)
Q Consensus 479 ~~~~~~~~lsl~~~~~~~l~~~~~~-~~Lr~L~l~~~~~~--------~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i 549 (1698)
+|-+..|++-+.++++........+ .+|+.|++.+.... ...+.+.+ ..-.|.+.+.++|.+..+-.++
T Consensus 106 fpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SL 183 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESL 183 (1096)
T ss_pred ccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHH
Confidence 4556678999988887764333322 45666665532110 11111110 1246788889999988888889
Q ss_pred cCCCcccEEEccCccCCCccccccccccceeecCCCCCCccch-HhhccccccEecccCcccccccCchhhccCccCcee
Q 000302 550 VCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPR-EIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEEL 628 (1698)
Q Consensus 550 ~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~Ls~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L 628 (1698)
.-+.+|+.|+|++|++.....+..+.+|++|||++|.+..+|. +.... +|+.|++++| .++.+-. |.+|.+|+.|
T Consensus 184 qll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~g--ie~LksL~~L 259 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLRG--IENLKSLYGL 259 (1096)
T ss_pred HHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhhh--HHhhhhhhcc
Confidence 9999999999999999998899999999999999999999986 22223 4999999999 5888754 8999999999
Q ss_pred cccCcccccccccCCCccchhhhCCCCCCCEEEEEeccccccc
Q 000302 629 YMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDARIMP 671 (1698)
Q Consensus 629 ~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 671 (1698)
++++|.+. +...+.-|..|..|+.|.+.+|.+..-|
T Consensus 260 DlsyNll~-------~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 260 DLSYNLLS-------EHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred chhHhhhh-------cchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 99999875 4555777888888999999998766544
No 74
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=8e-05 Score=87.98 Aligned_cols=174 Identities=13% Similarity=0.141 Sum_probs=112.3
Q ss_pred CCCCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc-------------------------
Q 000302 151 SYTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED------------------------- 204 (1698)
Q Consensus 151 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------------- 204 (1698)
.|.....++|.+...+.+..++..+.. ..+-|+|+.|+||||+|..++...-..
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQ 97 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHc
Confidence 455667889999999999999987654 579999999999999999998866331
Q ss_pred -ccCCEEEE----------------hHHHHHHHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCC
Q 000302 205 -KLFDKVVF----------------VERAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRS 261 (1698)
Q Consensus 205 -~~F~~~~~----------------~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~ 261 (1698)
.|-|.... |+.+..+.+.+. .+++-++|+|++.... ..+.+...+.. ...
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE-------pp~ 170 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE-------PPA 170 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc-------CCC
Confidence 01122211 122233333433 2567799999998763 33444443332 223
Q ss_pred CeE-EEEEeCchhhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHH
Q 000302 262 RCT-VLLTSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 334 (1698)
Q Consensus 262 g~k-ilvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 334 (1698)
++. |++|++...+..........+++.+++.++..+.+.+.... . . --++.+..|++.++|.|.....+.
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~-~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q-G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c-C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 344 45554544443222234569999999999999999884322 1 1 124557789999999998665443
No 75
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=5.4e-05 Score=93.15 Aligned_cols=170 Identities=16% Similarity=0.218 Sum_probs=112.0
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhcc------------------------cC
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK------------------------LF 207 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------~F 207 (1698)
....+++|.+..+..+..++..+.. +.+-++|+.|+||||+|+.+++...... |-
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~ 97 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHP 97 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCC
Confidence 4466789999999999888876553 5889999999999999999998764321 11
Q ss_pred CEEEEh-----HHHHHHHHHHH-------ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEE-EEeCch
Q 000302 208 DKVVFV-----ERAEKLRQRLK-------NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVL-LTSRNR 272 (1698)
Q Consensus 208 ~~~~~~-----~~~~~l~~~l~-------~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kil-vTtR~~ 272 (1698)
| ++.+ ...+.+++.+. .+++-++|+|+++.. ..++.+...+.+ ....+++| +||+..
T Consensus 98 D-v~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe-------pp~~~vfI~aTte~~ 169 (507)
T PRK06645 98 D-IIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE-------PPPHIIFIFATTEVQ 169 (507)
T ss_pred c-EEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh-------cCCCEEEEEEeCChH
Confidence 2 1121 11233333222 246779999999875 346666555444 34556655 455555
Q ss_pred hhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000302 273 DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 331 (1698)
Q Consensus 273 ~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 331 (1698)
.+..........+.+++++.++....+++.+....... -.+....|++.++|-+--+.
T Consensus 170 kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 170 KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARDAV 227 (507)
T ss_pred HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 55442223446789999999999999998885322221 24556779999999875443
No 76
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=6.2e-05 Score=94.40 Aligned_cols=172 Identities=13% Similarity=0.178 Sum_probs=112.8
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc-------------------------cc
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED-------------------------KL 206 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------------~~ 206 (1698)
....+++|.+..++.|.+++..+.. +.+-++|+.|+||||+|+.+++..... .|
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h 92 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRF 92 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCC
Confidence 4467789999999999999987655 677999999999999999997765321 22
Q ss_pred CCEEEEh-----HHHHHHHHHHH-------ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEe-Cc
Q 000302 207 FDKVVFV-----ERAEKLRQRLK-------NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTS-RN 271 (1698)
Q Consensus 207 F~~~~~~-----~~~~~l~~~l~-------~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTt-R~ 271 (1698)
.|. +.+ ...+.+++.+. .++.-++|||+++.. ..++.+...+.+ ....+++|++| ..
T Consensus 93 ~D~-~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE-------PP~~~~fIL~Ttd~ 164 (618)
T PRK14951 93 VDY-TELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE-------PPEYLKFVLATTDP 164 (618)
T ss_pred Cce-eecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc-------CCCCeEEEEEECCc
Confidence 332 333 12233433332 245568999999876 345555444433 33455665554 44
Q ss_pred hhhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 272 RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 272 ~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
..+..........|.+++++.++..+.+.+.+....... -.+....|++.++|-+--+..+
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 444432234467899999999999999988774322222 2456788999999987555443
No 77
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.02 E-value=0.00032 Score=87.71 Aligned_cols=176 Identities=15% Similarity=0.205 Sum_probs=96.6
Q ss_pred ccccchHHHHHHHHHHHhc-----CCceEEEEEcCCCchHHHHHHHHHHHHhhc---ccCC--EEEEh---------H--
Q 000302 156 EQFDSRMKIFQNIMEVLKD-----TNVGMIGVYGVNGVGKTTLVKQIAMQVIED---KLFD--KVVFV---------E-- 214 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~~~---------~-- 214 (1698)
+.+.||++++++|...|.+ ....++-|+|++|+|||+.++.|.+..... +... .++++ .
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4578999999999988872 223577899999999999999999876432 1111 13333 0
Q ss_pred --------------------HHHHHHHHHHc-c-CcEEEEEcCcccccc--cccccCcccccccccCCCCCCeEEEE--E
Q 000302 215 --------------------RAEKLRQRLKN-V-KRVLVILDNIWKLLN--LDAVGIPFGDVKKERNDDRSRCTVLL--T 268 (1698)
Q Consensus 215 --------------------~~~~l~~~l~~-~-k~~LlvlDdv~~~~~--~~~~~~~~~~~~~~~~~~~~g~kilv--T 268 (1698)
..+.+...+.+ . ...+||||+|+.... -+.+..-+. +. ...+++|+| +
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR----~~--~~s~SKLiLIGI 908 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFD----WP--TKINSKLVLIAI 908 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHH----Hh--hccCCeEEEEEe
Confidence 01122222211 1 235899999976521 011111010 00 223445443 3
Q ss_pred eCchhhhhc-------ccCCcceEEccCCCHHHHHHHHHHHhCCC---CCCCchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 000302 269 SRNRDVLCN-------DMNSQKFFLIEVLSYEEAWCLFEKIVGDS---AKASDFRVIADEIVRRCGGLPVAIKTIANALK 338 (1698)
Q Consensus 269 tR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~---~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~ 338 (1698)
|...+.... .++ ...+...|.+.++-.+++..++... ..+..++-+|+.+|..-|..=.||.++-.+..
T Consensus 909 SNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 909 SNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred cCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 322111110 121 2346679999999999999998521 22222334445455444555566665555543
No 78
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=5.1e-05 Score=92.38 Aligned_cols=173 Identities=17% Similarity=0.170 Sum_probs=112.4
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc---------------------------
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED--------------------------- 204 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------------- 204 (1698)
.....++|.+..++.+..++..+.+ +.+.++|+.|+||||+|..+++.....
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 3456789999999999999987665 458899999999999999999876432
Q ss_pred -ccCCEEEEh-------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEe-
Q 000302 205 -KLFDKVVFV-------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTS- 269 (1698)
Q Consensus 205 -~~F~~~~~~-------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTt- 269 (1698)
.+++.+.+- +.+..+.+.+. .+++-++|+|++... ..++.+...+.+ ....+.+|++|
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe-------p~~~t~~Il~t~ 165 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE-------PPPHAIFIFATT 165 (397)
T ss_pred CCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc-------CCCCeEEEEEeC
Confidence 134433332 22333444442 246678999998765 345666555444 34466665554
Q ss_pred CchhhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 270 RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 270 R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
+...+..........+++.++++++..+.+...+..... .--.+.+..|++.++|.+--+...
T Consensus 166 ~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 166 ELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred ChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 444443211122457889999999998888887732111 112566888999999988644443
No 79
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=7.2e-05 Score=91.16 Aligned_cols=172 Identities=12% Similarity=0.116 Sum_probs=111.7
Q ss_pred CCcccccchHHHHHHHHHHHhcCCce-EEEEEcCCCchHHHHHHHHHHHHhh--------------------cccCCEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIE--------------------DKLFDKVV 211 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~F~~~~ 211 (1698)
....+++|.+..++.+.+++..+... .+-++|+.|+||||+|+.+++.... ..+.|.+-
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 34677899999999998888876654 7999999999999999999874321 12344333
Q ss_pred Eh-------HHHHHHHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEe-Cchhhhhc
Q 000302 212 FV-------ERAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTS-RNRDVLCN 277 (1698)
Q Consensus 212 ~~-------~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTt-R~~~v~~~ 277 (1698)
+- +.+..+.+... .+++-++|+|++.... ..+.+...+.+ ....+++|++| ....+...
T Consensus 90 idaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-------Pp~~v~fIlatte~~Kl~~t 162 (491)
T PRK14964 90 IDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE-------PAPHVKFILATTEVKKIPVT 162 (491)
T ss_pred EecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC-------CCCCeEEEEEeCChHHHHHH
Confidence 21 22333333322 1466689999996652 34455444443 33456666555 44444432
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 332 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 332 (1698)
.......+.+++++.++..+.+.+.+..+...- -++....|++.++|-+-.+..
T Consensus 163 I~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 163 IISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-DEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred HHHhheeeecccccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 233467899999999999999998885322221 245567899999998764433
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=8e-05 Score=92.20 Aligned_cols=176 Identities=13% Similarity=0.175 Sum_probs=111.3
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc-------------------ccCCEEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED-------------------KLFDKVVF 212 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~~ 212 (1698)
....+++|.+..++.+..++..++. +.+.++|+.|+||||+|+.+++..... ..|..+++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3456789999999999999987654 567899999999999999999865321 11222333
Q ss_pred h--------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEE-EEeCchhhhhc
Q 000302 213 V--------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVL-LTSRNRDVLCN 277 (1698)
Q Consensus 213 ~--------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kil-vTtR~~~v~~~ 277 (1698)
+ +....+.+.+. .+++-++|+|++... ..++.+...+-+ ....+++| +||....+...
T Consensus 93 idaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-------pp~~v~fIL~Ttd~~kil~t 165 (546)
T PRK14957 93 IDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-------PPEYVKFILATTDYHKIPVT 165 (546)
T ss_pred eecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-------CCCCceEEEEECChhhhhhh
Confidence 2 22233333322 256779999999765 335555444443 33455555 55544444321
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChH-HHHHHHHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV-AIKTIANA 336 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~~~~ 336 (1698)
.......+++++++.++....+.+.+...... --+.....|++.++|-+- |+..+-.+
T Consensus 166 I~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~-~e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 166 ILSRCIQLHLKHISQADIKDQLKIILAKENIN-SDEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred HHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 23346789999999999888888766322211 124456789999999664 44444333
No 81
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.98 E-value=7.6e-05 Score=90.26 Aligned_cols=169 Identities=18% Similarity=0.212 Sum_probs=99.2
Q ss_pred CcccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-------
Q 000302 154 AYEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV------- 213 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~------- 213 (1698)
....+.|++..++++.+.+.- ...+-+.++|++|+|||++|+.+++..... |-.+...
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~~~v~~~~l~~~~~ 197 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--FIRVVGSELVRKYI 197 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--EEecchHHHHHHhh
Confidence 345688999999999887741 124568999999999999999999876432 3222211
Q ss_pred -HH---HHHHHHHHHccCcEEEEEcCcccccc-------------cccccCcccccccccCCCCCCeEEEEEeCchhhhh
Q 000302 214 -ER---AEKLRQRLKNVKRVLVILDNIWKLLN-------------LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC 276 (1698)
Q Consensus 214 -~~---~~~l~~~l~~~k~~LlvlDdv~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~ 276 (1698)
.. ...+.+........+|++||++.... ...+...+..+ +.. ....+.+||.||.......
T Consensus 198 g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~l-d~~-~~~~~v~vI~ttn~~~~ld 275 (364)
T TIGR01242 198 GEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEL-DGF-DPRGNVKVIAATNRPDILD 275 (364)
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHh-hCC-CCCCCEEEEEecCChhhCC
Confidence 11 11222222334668999999976410 00111111000 000 0234677888887543221
Q ss_pred cc----cCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChH
Q 000302 277 ND----MNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV 328 (1698)
Q Consensus 277 ~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 328 (1698)
.. ......+.+...+.++..++|+..+......++. -..++++.+.|..-
T Consensus 276 ~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~sg 329 (364)
T TIGR01242 276 PALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGASG 329 (364)
T ss_pred hhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCCH
Confidence 11 1224578999999999999999887532222211 13567788877653
No 82
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=1.4e-05 Score=93.33 Aligned_cols=36 Identities=17% Similarity=0.404 Sum_probs=17.5
Q ss_pred CCCccEEEEecCCCccccCchhHHHhcCCCcceeecccccce
Q 000302 1345 FCNLYYLRIENCNKLSNIFPWSMLERLQNLDDLRVVCCDSVQ 1386 (1698)
Q Consensus 1345 ~~~L~~L~i~~C~~L~~~~~~~~l~~l~~L~~L~i~~c~~l~ 1386 (1698)
+.+++.|+|++| .|+.+ | .-.++|++|.+++|..++
T Consensus 51 ~~~l~~L~Is~c-~L~sL-P----~LP~sLtsL~Lsnc~nLt 86 (426)
T PRK15386 51 ARASGRLYIKDC-DIESL-P----VLPNELTEITIENCNNLT 86 (426)
T ss_pred hcCCCEEEeCCC-CCccc-C----CCCCCCcEEEccCCCCcc
Confidence 345555555555 44443 2 122345555555555443
No 83
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.98 E-value=0.00028 Score=77.32 Aligned_cols=168 Identities=18% Similarity=0.163 Sum_probs=115.0
Q ss_pred CCCcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh------HH----------
Q 000302 152 YTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV------ER---------- 215 (1698)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~------~~---------- 215 (1698)
|...+.++|.+..+..+.+.+.....+..-.||++|.|||+-|..++...-....|.+++-- ..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~ 111 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN 111 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC
Confidence 45567889999999999999988778899999999999999999999877665666665542 11
Q ss_pred HHHHHHHHHc-----cCc-EEEEEcCcccc--cccccccCcccccccccCCCCCCeE-EEEEeCchhhhhcccCCcceEE
Q 000302 216 AEKLRQRLKN-----VKR-VLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCT-VLLTSRNRDVLCNDMNSQKFFL 286 (1698)
Q Consensus 216 ~~~l~~~l~~-----~k~-~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~k-ilvTtR~~~v~~~~~~~~~~~~ 286 (1698)
...+...... -+. -.||||+.+.. +.|..+...+.+ ....++ |+||+--..+..........|+
T Consensus 112 fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-------~s~~trFiLIcnylsrii~pi~SRC~Kfr 184 (346)
T KOG0989|consen 112 FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED-------FSRTTRFILICNYLSRIIRPLVSRCQKFR 184 (346)
T ss_pred HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-------cccceEEEEEcCChhhCChHHHhhHHHhc
Confidence 1112111110 133 37889999887 668887665554 344555 4555544444332233456889
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000302 287 IEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 327 (1698)
Q Consensus 287 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 327 (1698)
.++|.+++...-++..+..+...-+ .+.-+.|++.++|--
T Consensus 185 Fk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 185 FKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDL 224 (346)
T ss_pred CCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcH
Confidence 9999999999999998853332222 455678999998843
No 84
>PLN03150 hypothetical protein; Provisional
Probab=97.96 E-value=1.2e-05 Score=103.83 Aligned_cols=103 Identities=18% Similarity=0.334 Sum_probs=71.0
Q ss_pred ceeEEEecCCCcc-cCCccccCCCcccEEEccCccCC--CccccccccccceeecCCCCCC-ccchHhhccccccEeccc
Q 000302 531 ELRVVHFTRTCFL-SLPSSLVCLISLRTLSLEGCQVG--DVAIVGQLKKLEILSFRNSDIQ-QLPREIGQLVQLRLLDLR 606 (1698)
Q Consensus 531 ~LrvL~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~l~--~~~~i~~L~~L~~L~Ls~~~i~-~LP~~i~~L~~L~~L~L~ 606 (1698)
.++.|+|++|.+. .+|..|+.+.+|++|+|++|.+. .|..++.+.+|++|+|++|.+. .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3667777777776 46777777777777777777765 2456777777777777777776 667777777777777777
Q ss_pred CcccccccCchhhcc-CccCceecccCcc
Q 000302 607 NCRRLQAIAPNVISK-LSRLEELYMGDSF 634 (1698)
Q Consensus 607 ~~~~l~~lp~~~i~~-L~~L~~L~l~~~~ 634 (1698)
+|.....+|.. ++. +.++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 77544566665 443 3455566665543
No 85
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.95 E-value=5.8e-06 Score=70.67 Aligned_cols=57 Identities=32% Similarity=0.541 Sum_probs=33.9
Q ss_pred ccceeecCCCCCCccch-HhhccccccEecccCcccccccCchhhccCccCceecccCc
Q 000302 576 KLEILSFRNSDIQQLPR-EIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDS 633 (1698)
Q Consensus 576 ~L~~L~Ls~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 633 (1698)
+|++|++++|++..+|. .+..+++|++|++++| .++.+|++.+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 45566666666666653 4555666666666655 456666555666666666666554
No 86
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.94 E-value=0.00012 Score=79.71 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=96.1
Q ss_pred HHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc--------------------ccCCEEEEh--------HHHH
Q 000302 167 NIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVVFV--------ERAE 217 (1698)
Q Consensus 167 ~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~~~--------~~~~ 217 (1698)
.+.+.+..++. ..+-++|+.|+||||+|+.+++..... .+.|..... +.+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~ 82 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVR 82 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHH
Confidence 45666666655 679999999999999999999876432 233443322 2333
Q ss_pred HHHHHHHc----cCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeCch-hhhhcccCCcceEEccCC
Q 000302 218 KLRQRLKN----VKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVL 290 (1698)
Q Consensus 218 ~l~~~l~~----~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~-~v~~~~~~~~~~~~l~~L 290 (1698)
.+.+.+.. +++-++|+||+.... .++.+...+.+ ....+.+|++|++. .+..........+.+.++
T Consensus 83 ~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~-------~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~ 155 (188)
T TIGR00678 83 ELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEE-------PPPNTLFILITPSPEKLLPTIRSRCQVLPFPPL 155 (188)
T ss_pred HHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcC-------CCCCeEEEEEECChHhChHHHHhhcEEeeCCCC
Confidence 33333332 466789999987652 34555444433 33456666666543 322211223568999999
Q ss_pred CHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHH
Q 000302 291 SYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 329 (1698)
Q Consensus 291 ~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 329 (1698)
+.++..+.+.+. | . -++.+..|++.++|.|..
T Consensus 156 ~~~~~~~~l~~~-g--i----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 156 SEEALLQWLIRQ-G--I----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred CHHHHHHHHHHc-C--C----CHHHHHHHHHHcCCCccc
Confidence 999988888776 3 1 145688999999998853
No 87
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=9.5e-05 Score=92.93 Aligned_cols=174 Identities=14% Similarity=0.181 Sum_probs=112.8
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc--------------------ccCCEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVV 211 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 211 (1698)
....+++|.+..++.+.+.+..+.+ +.+-++|+.|+||||+|+.+++..... +|.|.+.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ie 92 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIE 92 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCcee
Confidence 4467789999999999999987654 457899999999999999998865432 1223221
Q ss_pred Eh-------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEE-EEeCchhhhhc
Q 000302 212 FV-------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVL-LTSRNRDVLCN 277 (1698)
Q Consensus 212 ~~-------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kil-vTtR~~~v~~~ 277 (1698)
+- +.+..+.+.+. ++++-++|+|++... ...+.+...+-+ .....++| +||....+...
T Consensus 93 idaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-------Pp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 93 IDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------PPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-------CCCCeEEEEecCCccccchH
Confidence 11 22233333322 256779999999876 345555444433 33455555 45554544422
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 334 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 334 (1698)
.......|.+++++.++....+.+.+..+.... -+.....|++.++|.+-.+..+.
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~-e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF-EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 233467899999999999999888763221111 24456789999999887554443
No 88
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.93 E-value=0.00017 Score=87.70 Aligned_cols=174 Identities=14% Similarity=0.183 Sum_probs=112.0
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc--------------------ccCCEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVV 211 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 211 (1698)
.....++|.+..++.+.+++..+.. +.+-++|+.|+||||+|+.++...... .+++.+.
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~ 90 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIE 90 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 3456789999999999999987654 478899999999999999998875321 2455543
Q ss_pred Eh-------HHHHHHHHHHHc----cCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEeCchh-hhhc
Q 000302 212 FV-------ERAEKLRQRLKN----VKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD-VLCN 277 (1698)
Q Consensus 212 ~~-------~~~~~l~~~l~~----~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~-v~~~ 277 (1698)
+- +....+.+.+.. +++-++|+|++... ...+.+...+.+ ....+.+|++|.+.. +...
T Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~-------~~~~~~lIl~~~~~~~l~~~ 163 (355)
T TIGR02397 91 IDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE-------PPEHVVFILATTEPHKIPAT 163 (355)
T ss_pred eeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC-------CccceeEEEEeCCHHHHHHH
Confidence 32 123334443321 45568999998654 334444443332 334566666664443 2221
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 334 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 334 (1698)
.......+.+.++++++..+.+..++......- -++.+..+++.++|-|..+....
T Consensus 164 l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i-~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 164 ILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI-EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred HHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCChHHHHHHH
Confidence 122345788899999999888888773211111 14667889999999987665544
No 89
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00038 Score=86.75 Aligned_cols=176 Identities=16% Similarity=0.215 Sum_probs=113.4
Q ss_pred CCcccccchHHHHHHHHHHHhcCC-ceEEEEEcCCCchHHHHHHHHHHHHhhc--------------------ccCCEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVV 211 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 211 (1698)
....+++|.+..++.|.+++..+. ...+-++|+.|+||||+|+.+++..-.. .|.|. +
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv-~ 91 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV-V 91 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce-E
Confidence 345678899988888989888765 4788899999999999999999876432 12232 2
Q ss_pred Eh--------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEeCc-hhhhh
Q 000302 212 FV--------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRN-RDVLC 276 (1698)
Q Consensus 212 ~~--------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~-~~v~~ 276 (1698)
++ +.+..+++.+. .+++-+||+|++... ..++.+...+.+ ......+|++|.. ..+..
T Consensus 92 eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE-------P~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 92 EIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE-------PPARVTFVLATTEPHKFPV 164 (624)
T ss_pred EEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc-------cCCCEEEEEecCChhhhhH
Confidence 22 23333433332 246779999999766 334555444432 2234555555543 44432
Q ss_pred cccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh-HHHHHHHHHH
Q 000302 277 NDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP-VAIKTIANAL 337 (1698)
Q Consensus 277 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~~~~l 337 (1698)
........++++++++++....+.+.+...... --.+.+..|++.++|-+ .|+..+..++
T Consensus 165 TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 165 TIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 112334678999999999998888876422111 12456778999999965 6777666554
No 90
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.0001 Score=91.04 Aligned_cols=174 Identities=13% Similarity=0.158 Sum_probs=109.3
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc--------------------ccCCEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVV 211 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 211 (1698)
....+++|++..++.+.+++..+.. +.+-++|+.|+||||+|+.+++..... .+.| ++
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D-ii 91 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD-IV 91 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc-eE
Confidence 3456789999999999999976544 578899999999999999999875421 1223 22
Q ss_pred Eh--------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEe-Cchhhhh
Q 000302 212 FV--------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTS-RNRDVLC 276 (1698)
Q Consensus 212 ~~--------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTt-R~~~v~~ 276 (1698)
++ +.++.+.+.+. .+++-++|+|+++.. ..++.+...+.+ ....+.+|++| ....+..
T Consensus 92 eIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-------Pp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 92 ELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-------PPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred EeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-------CCCcEEEEEECCChHhhhH
Confidence 33 22233333222 134457999998764 344555444433 23455555444 4444432
Q ss_pred cccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChH-HHHHHHH
Q 000302 277 NDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV-AIKTIAN 335 (1698)
Q Consensus 277 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~~~ 335 (1698)
........+.+.++++++....+.+.+......- -.+.+..+++.++|-+- |+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I-s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI-EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1233356889999999999988888774221111 14557789999999664 4444443
No 91
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.92 E-value=9.7e-06 Score=69.27 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=31.3
Q ss_pred ceeEEEecCCCcccCC-ccccCCCcccEEEccCccCCC--ccccccccccceeecCCCC
Q 000302 531 ELRVVHFTRTCFLSLP-SSLVCLISLRTLSLEGCQVGD--VAIVGQLKKLEILSFRNSD 586 (1698)
Q Consensus 531 ~LrvL~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~Ls~~~ 586 (1698)
+|++|++++|.+..+| ..|..+.+|++|++++|.+.. +..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555555554 345555566666666555553 2455566666666666554
No 92
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=7.4e-05 Score=93.16 Aligned_cols=171 Identities=13% Similarity=0.198 Sum_probs=109.2
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc--------------------ccCCEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVV 211 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 211 (1698)
....+++|.+..+..|.+++..++. +.+.++|+.|+||||+|+.+++..... .++|.+
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl- 91 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL- 91 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE-
Confidence 4467889999999999999987664 578999999999999999998864221 123332
Q ss_pred Eh-----HHHHHHHHHHH-------ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeCch-hhhh
Q 000302 212 FV-----ERAEKLRQRLK-------NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLC 276 (1698)
Q Consensus 212 ~~-----~~~~~l~~~l~-------~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~-~v~~ 276 (1698)
.+ ...+.+++.+. .+++-++|+|++.... ..+.+...+.+ ....+++|++|.+. .+..
T Consensus 92 EidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE-------Pp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 92 EIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-------PPEHVKFILATTDPHKVPV 164 (709)
T ss_pred EEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh-------CCCCcEEEEEeCCccccch
Confidence 22 12223333322 2567799999997653 23334333332 23455666666443 3322
Q ss_pred cccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000302 277 NDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 332 (1698)
Q Consensus 277 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 332 (1698)
...+....|.+++++.++....+.+.+......- -.+....|++.++|-+.-+..
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHHHH
Confidence 1223345778889999999999988774322211 245678899999998854443
No 93
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.89 E-value=0.00016 Score=81.47 Aligned_cols=172 Identities=12% Similarity=0.153 Sum_probs=97.3
Q ss_pred cccc-chH-HHHHHHHHHHh-cCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHHHHHHHHHHH-ccCcEEE
Q 000302 156 EQFD-SRM-KIFQNIMEVLK-DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVERAEKLRQRLK-NVKRVLV 231 (1698)
Q Consensus 156 ~~~~-gr~-~~~~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~~~~l~~~l~-~~k~~Ll 231 (1698)
+.|+ |+. ..+..+.++.. ....+.+.|+|..|+|||+||+.+++..... .+ .+++++..... ..+. ....-+|
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~~-~~~~i~~~~~~-~~~~~~~~~~~l 94 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-GR-NARYLDAASPL-LAFDFDPEAELY 94 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CC-cEEEEehHHhH-HHHhhcccCCEE
Confidence 4444 443 34444445444 2344678999999999999999999976433 22 23333221111 1111 1234478
Q ss_pred EEcCcccccccc--cccCcccccccccCCCCCCe-EEEEEeCchhhhhc-------ccCCcceEEccCCCHHHHHHHHHH
Q 000302 232 ILDNIWKLLNLD--AVGIPFGDVKKERNDDRSRC-TVLLTSRNRDVLCN-------DMNSQKFFLIEVLSYEEAWCLFEK 301 (1698)
Q Consensus 232 vlDdv~~~~~~~--~~~~~~~~~~~~~~~~~~g~-kilvTtR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~Lf~~ 301 (1698)
|+||+.....+. .+...+... ...|. .||+|++....... .+.....+++.++++++-..++.+
T Consensus 95 iiDdi~~l~~~~~~~L~~~~~~~------~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 95 AVDDVERLDDAQQIALFNLFNRV------RAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred EEeChhhcCchHHHHHHHHHHHH------HHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 999997553221 222222110 12333 46777665432210 122246889999999987777776
Q ss_pred HhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000302 302 IVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANAL 337 (1698)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 337 (1698)
.+..... .--+++...+++.+.|.+..+..+...+
T Consensus 169 ~~~~~~v-~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 169 AAAERGL-QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5522111 1124677788889999998877766655
No 94
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.89 E-value=0.00016 Score=86.65 Aligned_cols=174 Identities=13% Similarity=0.088 Sum_probs=106.5
Q ss_pred CCcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcc-cCCEEEEh-------HHH-HHHHHHH
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK-LFDKVVFV-------ERA-EKLRQRL 223 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~~~-------~~~-~~l~~~l 223 (1698)
....+++|++..++.+..++.....+.+.++|+.|+||||+|+.+++...... .+..+.+- +.. +.+.+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~ 93 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFA 93 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHH
Confidence 34566889999999999999877777789999999999999999998764322 11111111 111 1222221
Q ss_pred H-----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeCc-hhhhhcccCCcceEEccCCCHHHH
Q 000302 224 K-----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN-RDVLCNDMNSQKFFLIEVLSYEEA 295 (1698)
Q Consensus 224 ~-----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~ 295 (1698)
. ...+-++|+|++.... ..+.+...+.. ....+++|+++.. ..+..........+.+.++++++.
T Consensus 94 ~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~-------~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei 166 (319)
T PRK00440 94 RTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEM-------YSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAV 166 (319)
T ss_pred hcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhc-------CCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHH
Confidence 1 1245689999986542 22333322222 2334567766643 222211112345789999999999
Q ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHH
Q 000302 296 WCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 334 (1698)
Q Consensus 296 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 334 (1698)
...+.+.+...... --.+.+..+++.++|.+--+...-
T Consensus 167 ~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 167 AERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 88888877422211 124567889999999886644433
No 95
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=7.7e-07 Score=95.29 Aligned_cols=123 Identities=16% Similarity=0.185 Sum_probs=81.9
Q ss_pred hccccccccccccCCCCccccccCCCCCccccccccEEEEecCCCCCcCCChhhhhccCCCcEEEEecccccceEeeccc
Q 000302 1152 VVGFHDIKDLKLSQFPHLKEIWHGQALNVSIFSNLRSLGVDNCTNMSSAIPANLLRCLNNLERLKVRNCDSLEEVFHLED 1231 (1698)
Q Consensus 1152 ~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~L~~L~i~~C~~l~~~~p~~~l~~l~~L~~L~l~~c~~l~~i~~~~~ 1231 (1698)
+..|..|+.|.|.|..--..|... .+.=.+|+.|+++.|..++.-...-++.+|+.|.+|++++|.-.......
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~----iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv-- 279 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNT----IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV-- 279 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHH----HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH--
Confidence 566777887777765421111111 12227899999999999987555667889999999999999865544321
Q ss_pred CCCCCCcCCcccccceEecccCCCceeeccCcccccccccccceeeecCCCccc
Q 000302 1232 VNADEHFGPLFPKLYELELIDLPKLKRFCNFKWNIIELLSLSSLWIENCPNMET 1285 (1698)
Q Consensus 1232 ~~~~~~~~~~lp~L~~L~L~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~L~~ 1285 (1698)
.+..+-+.|+.|+|+||..--.......-...+|+|.+|++++|..++.
T Consensus 280 -----~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 280 -----AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred -----HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 2344467899999999853211111111124689999999999987766
No 96
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=4e-06 Score=95.14 Aligned_cols=181 Identities=18% Similarity=0.172 Sum_probs=127.2
Q ss_pred CCCCeEEEEEecccCCCCccCh--hhhccCCceeEEEecCCCccc---CCccccCCCcccEEEccCccCCCc---ccccc
Q 000302 502 ECPKLSLFLLFAKYDSSLKIPD--LFFEGMNELRVVHFTRTCFLS---LPSSLVCLISLRTLSLEGCQVGDV---AIVGQ 573 (1698)
Q Consensus 502 ~~~~Lr~L~l~~~~~~~~~i~~--~~f~~l~~LrvL~L~~~~i~~---lp~~i~~L~~Lr~L~L~~~~l~~~---~~i~~ 573 (1698)
+..+||...+.+.. ...+. ...+.+.++|.|||++|-+.. +-.-...|++|+.|+|+.|.+..+ ..-..
T Consensus 119 n~kkL~~IsLdn~~---V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 119 NLKKLREISLDNYR---VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hHHhhhheeecCcc---ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 45677777776541 22222 355779999999999997654 334456789999999999998765 23357
Q ss_pred ccccceeecCCCCCC--ccchHhhccccccEecccCcccccccCchhhccCccCceecccCcccccccccCCCccchhhh
Q 000302 574 LKKLEILSFRNSDIQ--QLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVEL 651 (1698)
Q Consensus 574 L~~L~~L~Ls~~~i~--~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 651 (1698)
+.+|+.|.|+.|.+. .+-.-.-.+++|..|+|..|..+..-... ...+..|++|++++|.+. ........
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li-------~~~~~~~~ 267 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI-------DFDQGYKV 267 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccc-------cccccccc
Confidence 889999999999887 33333456789999999998433222222 456788999999998875 23334567
Q ss_pred CCCCCCCEEEEEecccccc--chh------hhhhccceeEEEEecccccc
Q 000302 652 KGLSKLTTLEIHIRDARIM--PQD------LISMKLEIFRMFIGNVVDWY 693 (1698)
Q Consensus 652 ~~L~~L~~L~l~~~~~~~~--~~~------~~~~~L~~l~~~~~~~~~~~ 693 (1698)
+.++.|+.|.++.+++..+ |.. ..+.+|+.|.+..+.+.+|.
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 8888899999988776633 222 26788888888777665553
No 97
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.86 E-value=6e-05 Score=78.67 Aligned_cols=109 Identities=22% Similarity=0.233 Sum_probs=67.6
Q ss_pred cchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhH--------HHH--------HH-HH
Q 000302 159 DSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVE--------RAE--------KL-RQ 221 (1698)
Q Consensus 159 ~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~--------~~~--------~l-~~ 221 (1698)
.||+..++.+...+.....+.+.|+|++|+||||+|+.+++..... -..++++. ... .. ..
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhhhHhHHHH
Confidence 4788889999998887667789999999999999999999987522 12333430 000 00 11
Q ss_pred HHHccCcEEEEEcCcccc-----cccccccCcccccccccCCCCCCeEEEEEeCchh
Q 000302 222 RLKNVKRVLVILDNIWKL-----LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD 273 (1698)
Q Consensus 222 ~l~~~k~~LlvlDdv~~~-----~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~ 273 (1698)
.....++.++|+||++.. ..+..+...+.. .. ....+..||+||....
T Consensus 79 ~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~---~~-~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLND---LR-IDRENVRVIGATNRPL 131 (151)
T ss_pred hhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCc---ee-ccCCCeEEEEecCccc
Confidence 111247789999999853 122222111111 00 0136788888887653
No 98
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.85 E-value=1.4e-06 Score=111.40 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=22.0
Q ss_pred ccEEEEecCCCcccccchHhHhhhccccEEEEcccccc
Q 000302 1522 LTTLDVSICDGLINLVTLAAAESLVKLARMKIAACGKM 1559 (1698)
Q Consensus 1522 L~~L~i~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~l 1559 (1698)
|+.|+++.|...+.-.....+.++..++.+++.+|+.+
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 66667777666666544444333555666666666544
No 99
>PRK05642 DNA replication initiation factor; Validated
Probab=97.84 E-value=0.00025 Score=79.52 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=92.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHHH------HHHHHHHHccCcEEEEEcCcccc---ccccc-ccC
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVERA------EKLRQRLKNVKRVLVILDNIWKL---LNLDA-VGI 247 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~~------~~l~~~l~~~k~~LlvlDdv~~~---~~~~~-~~~ 247 (1698)
..+.|+|..|+|||.|++.+++....+ -..++|+... ..+.+.+.+ - =++|+||+... ..|+. +..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~~~~~~~~~~~~~~~-~-d~LiiDDi~~~~~~~~~~~~Lf~ 121 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAELLDRGPELLDNLEQ-Y-ELVCLDDLDVIAGKADWEEALFH 121 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHHHHhhhHHHHHhhhh-C-CEEEEechhhhcCChHHHHHHHH
Confidence 578999999999999999999876543 2345666221 233334431 2 26889999643 34433 222
Q ss_pred cccccccccCCCCCCeEEEEEeCchhhhhc--------ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHH
Q 000302 248 PFGDVKKERNDDRSRCTVLLTSRNRDVLCN--------DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEI 319 (1698)
Q Consensus 248 ~~~~~~~~~~~~~~g~kilvTtR~~~v~~~--------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i 319 (1698)
.+... ...|..||+|++...-... .+.....++++++++++-.+.+++++..... .--+++..-|
T Consensus 122 l~n~~------~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~-~l~~ev~~~L 194 (234)
T PRK05642 122 LFNRL------RDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGL-HLTDEVGHFI 194 (234)
T ss_pred HHHHH------HhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 22110 2346778888875321110 2233467899999999999999976632111 1125778889
Q ss_pred HHHhCCChHHHHHHHHHH
Q 000302 320 VRRCGGLPVAIKTIANAL 337 (1698)
Q Consensus 320 ~~~c~GlPlai~~~~~~l 337 (1698)
++.+.|-.-++..+-..|
T Consensus 195 ~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 195 LTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHhcCCCHHHHHHHHHHH
Confidence 999888766555444433
No 100
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=3.1e-05 Score=90.58 Aligned_cols=59 Identities=22% Similarity=0.436 Sum_probs=29.6
Q ss_pred ccccEEEEecCCCCCcCCChhhhhccCCCcEEEEecccccceEeecccCCCCCCcCCcccccceEecccCCCceee
Q 000302 1184 SNLRSLGVDNCTNMSSAIPANLLRCLNNLERLKVRNCDSLEEVFHLEDVNADEHFGPLFPKLYELELIDLPKLKRF 1259 (1698)
Q Consensus 1184 ~~L~~L~i~~C~~l~~~~p~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~lp~L~~L~L~~~~~L~~~ 1259 (1698)
.+++.|+|++| .++.+ |. + ..+|++|.+++|.+++.+|+. +.++|+.|.+++|+++..+
T Consensus 52 ~~l~~L~Is~c-~L~sL-P~--L--P~sLtsL~Lsnc~nLtsLP~~-----------LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 52 RASGRLYIKDC-DIESL-PV--L--PNELTEITIENCNNLTTLPGS-----------IPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred cCCCEEEeCCC-CCccc-CC--C--CCCCcEEEccCCCCcccCCch-----------hhhhhhheEccCccccccc
Confidence 55666666665 44432 21 1 134666666666665555541 0235555556555555443
No 101
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00028 Score=88.99 Aligned_cols=169 Identities=16% Similarity=0.171 Sum_probs=109.1
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc---------------------------
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED--------------------------- 204 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------------- 204 (1698)
....+++|.+..++.+.+++..+.+ +.+.++|+.|+||||+|+.+++.....
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 3456789999999999999887655 568899999999999999998866331
Q ss_pred -ccCCEEEEh-------HHHHHHHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEE-EEe
Q 000302 205 -KLFDKVVFV-------ERAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVL-LTS 269 (1698)
Q Consensus 205 -~~F~~~~~~-------~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kil-vTt 269 (1698)
.+|+.+.+- +.+..+.+.+. .+++-++|+|+++... ..+.+...+.+ ....+.+| +|+
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe-------Pp~~tv~IL~t~ 165 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE-------PPPHAIFIFATT 165 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC-------CCCCeEEEEEeC
Confidence 234543332 23333333442 2466689999987653 34445444433 23345554 454
Q ss_pred CchhhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHH
Q 000302 270 RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 329 (1698)
Q Consensus 270 R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 329 (1698)
+...+..........+++.+++.++....+.+.+...... --.+.+..|++.++|-.--
T Consensus 166 ~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 166 ELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMRD 224 (620)
T ss_pred ChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHH
Confidence 4444433123346789999999999888887766321111 1245678899999996543
No 102
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=8.5e-07 Score=94.99 Aligned_cols=189 Identities=17% Similarity=0.101 Sum_probs=112.7
Q ss_pred CCccEEEEecCCCccccCchhHHHhcCCCcceeecccccceE-eeecccccCccccCCccCCCCCCCCccccCccceEec
Q 000302 1346 CNLYYLRIENCNKLSNIFPWSMLERLQNLDDLRVVCCDSVQE-IFELRALNGWDTHNRTTTQLPETIPSFVFPQLTFLIL 1424 (1698)
Q Consensus 1346 ~~L~~L~i~~C~~L~~~~~~~~l~~l~~L~~L~i~~c~~l~~-i~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~L~~L~l 1424 (1698)
+.|+.|++++ ..++.--...++..|..|+.|.+.+.. +.+ |.. ...+-..|+.|+|
T Consensus 185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~---------------------~iAkN~~L~~lnl 241 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVN---------------------TIAKNSNLVRLNL 241 (419)
T ss_pred hhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccc-cCcHHHH---------------------HHhccccceeecc
Confidence 4688888886 455543345568888889988888762 222 110 1122346777777
Q ss_pred cCCCCcccccCCcccCCCCcccEEEEecccccccccccccCccccCCCCccCcCcCccccccccccccccceeecccccc
Q 000302 1425 RGLPRLKSFYPGVHISEWPVLKKLVVWECAEVELLASEFFGLQETPANSQHDINVPQPLFSIYKIGFRCLEDLELSTLPK 1504 (1698)
Q Consensus 1425 ~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~~L~l~~c~~ 1504 (1698)
+.|+.+++.........|+.|.+|+++-|.--+..
T Consensus 242 sm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~--------------------------------------------- 276 (419)
T KOG2120|consen 242 SMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK--------------------------------------------- 276 (419)
T ss_pred ccccccchhHHHHHHHhhhhHhhcCchHhhccchh---------------------------------------------
Confidence 77777777665555556777777777666322111
Q ss_pred ccccccCCCCcccccCCccEEEEecCCC-cccccchHhHhhhccccEEEEcccccccccccccccccccccccccccccc
Q 000302 1505 LLHLWKGKSKLSHVFQNLTTLDVSICDG-LINLVTLAAAESLVKLARMKIAACGKMEKVIQQVGAEVVEEDSIATFNQLQ 1583 (1698)
Q Consensus 1505 l~~~~~~~~~~~~~~~~L~~L~i~~C~~-l~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~L~ 1583 (1698)
.+-+.. .--.+|+.|++++|.+ +..--...+++.+|+|..|++++|.++..-... ....|+.|+
T Consensus 277 Vtv~V~------hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~---------~~~kf~~L~ 341 (419)
T KOG2120|consen 277 VTVAVA------HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ---------EFFKFNYLQ 341 (419)
T ss_pred hhHHHh------hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH---------HHHhcchhe
Confidence 000000 0113666777777642 222223345668899999999998876441111 145688999
Q ss_pred ccccccCCCccccccCCCcceeeCCCccEEEEeccCC
Q 000302 1584 YLGIDCLPSLTCFCFGRSKNKLEFPSLEQVVVRECPN 1620 (1698)
Q Consensus 1584 ~L~L~~~~~L~~~~~~~~~~~~~~psL~~l~v~~C~~ 1620 (1698)
+|.+..|-.+----. -..-..|+|..|+|.+|-.
T Consensus 342 ~lSlsRCY~i~p~~~---~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETL---LELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eeehhhhcCCChHHe---eeeccCcceEEEEeccccC
Confidence 999988866532111 1223578999999998843
No 103
>PLN03150 hypothetical protein; Provisional
Probab=97.81 E-value=3.3e-05 Score=99.71 Aligned_cols=109 Identities=19% Similarity=0.275 Sum_probs=90.6
Q ss_pred CeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcc-cCCccccCCCcccEEEccCccCC--Cccccccccccceee
Q 000302 505 KLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFL-SLPSSLVCLISLRTLSLEGCQVG--DVAIVGQLKKLEILS 581 (1698)
Q Consensus 505 ~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~l~--~~~~i~~L~~L~~L~ 581 (1698)
.++.|.+.++ .....+|.. |..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+. .|..+++|.+|++|+
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCC-CccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 4777888777 333456665 588999999999999997 79999999999999999999987 368899999999999
Q ss_pred cCCCCCC-ccchHhhcc-ccccEecccCcccccccC
Q 000302 582 FRNSDIQ-QLPREIGQL-VQLRLLDLRNCRRLQAIA 615 (1698)
Q Consensus 582 Ls~~~i~-~LP~~i~~L-~~L~~L~L~~~~~l~~lp 615 (1698)
|++|.+. .+|..++.+ .++..+++.+|..+...|
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999887 889998764 577889999886554443
No 104
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00037 Score=88.19 Aligned_cols=172 Identities=16% Similarity=0.191 Sum_probs=110.7
Q ss_pred CCcccccchHHHHHHHHHHHhcCC-ceEEEEEcCCCchHHHHHHHHHHHHhhc-----------------ccCCEEEEh-
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIED-----------------KLFDKVVFV- 213 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----------------~~F~~~~~~- 213 (1698)
.....++|.+..++.+..++..++ .+.+-++|+.|+||||+|+.++...-.. .++|.+ ++
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-eid 93 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-EMD 93 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE-EEe
Confidence 345678999999999999998765 4567899999999999999998764321 123322 22
Q ss_pred -------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeE-EEEEeCchhhhhccc
Q 000302 214 -------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCT-VLLTSRNRDVLCNDM 279 (1698)
Q Consensus 214 -------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~k-ilvTtR~~~v~~~~~ 279 (1698)
+.++.+.+.+. .+++-++|+|++... ..++.+...+-+ ....+. |++|++...+.....
T Consensus 94 aasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE-------PP~~tifILaTte~~KLl~TI~ 166 (725)
T PRK07133 94 AASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE-------PPKHVIFILATTEVHKIPLTIL 166 (725)
T ss_pred ccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc-------CCCceEEEEEcCChhhhhHHHH
Confidence 22344444443 256679999998765 345555443333 223444 455555555543223
Q ss_pred CCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 280 NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 280 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
.....+.+.+++.++....+...+....... -.+.+..|++.++|-+--+..+
T Consensus 167 SRcq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 167 SRVQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred hhceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 3456899999999999888887663211111 1345778999999977544443
No 105
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.0003 Score=91.75 Aligned_cols=170 Identities=13% Similarity=0.158 Sum_probs=111.3
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc----------------------ccCCE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED----------------------KLFDK 209 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~----------------------~~F~~ 209 (1698)
..+.+++|.+..++.|..++..+++ +.+.++|+.|+||||+|+.+++..... .++|.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv 91 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDV 91 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcE
Confidence 3456789999999999999987665 468899999999999999999877421 12333
Q ss_pred EEEh--------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEe-Cchhh
Q 000302 210 VVFV--------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTS-RNRDV 274 (1698)
Q Consensus 210 ~~~~--------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTt-R~~~v 274 (1698)
+ ++ +.+..+++++. .+++-++|||++... ...+.+...+.+ -...+.+|++| ....+
T Consensus 92 ~-eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE-------pP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 92 T-EIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE-------PPEHLKFIFATTEPDKV 163 (824)
T ss_pred E-EecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC-------CCCCeEEEEEeCChhhh
Confidence 2 33 22333433332 245668999999876 334555444443 33455555544 44444
Q ss_pred hhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000302 275 LCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 331 (1698)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 331 (1698)
..........|.+..++.++..+.+.+.+..+.... -.+....|++.++|-+..+.
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 432233467899999999999888888763222111 23456789999999885443
No 106
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00037 Score=84.70 Aligned_cols=171 Identities=12% Similarity=0.187 Sum_probs=106.1
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc------ccCCEEE-Eh--------HHH
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED------KLFDKVV-FV--------ERA 216 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~~-~~--------~~~ 216 (1698)
....+++|.+..++.+.+++.+++. +.+-++|+.|+||||+|+.+++..... ..|...+ -+ +..
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 93 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI 93 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH
Confidence 3456789999999999999987654 488899999999999999998876431 1122211 11 122
Q ss_pred HHHHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEe-CchhhhhcccCCcceEEccC
Q 000302 217 EKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTS-RNRDVLCNDMNSQKFFLIEV 289 (1698)
Q Consensus 217 ~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTt-R~~~v~~~~~~~~~~~~l~~ 289 (1698)
..+.+.+. .+++-++|+|++.... .++.+...+.+ ....+.+|++| +...+..........+++++
T Consensus 94 ~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~-------~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~ 166 (367)
T PRK14970 94 RNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE-------PPAHAIFILATTEKHKIIPTILSRCQIFDFKR 166 (367)
T ss_pred HHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC-------CCCceEEEEEeCCcccCCHHHHhcceeEecCC
Confidence 23333221 1456689999986542 24444333322 23345555554 43333321223345789999
Q ss_pred CCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000302 290 LSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 331 (1698)
Q Consensus 290 L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 331 (1698)
+++++....+.+.+...... --.+.+..+++.++|-+-.+.
T Consensus 167 ~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 167 ITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALRDAL 207 (367)
T ss_pred ccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHHHH
Confidence 99999998888877321111 124667889999999665443
No 107
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00039 Score=87.69 Aligned_cols=174 Identities=13% Similarity=0.183 Sum_probs=112.6
Q ss_pred CCCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhcc-------------------------
Q 000302 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK------------------------- 205 (1698)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------- 205 (1698)
|....+++|.+..++.+.+++..++. ..+-++|+.|+||||+|+.+++......
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~ 99 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGR 99 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCC
Confidence 34567789999999999999987654 4788999999999999999998653221
Q ss_pred cCCEEEEh--------HHHHHHHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEe-C
Q 000302 206 LFDKVVFV--------ERAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTS-R 270 (1698)
Q Consensus 206 ~F~~~~~~--------~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTt-R 270 (1698)
|.| ++++ +.+..+.+.+. .+++-++|+|++.... ..+.+...+.+ ...++++|++| .
T Consensus 100 h~D-v~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe-------Pp~~~~fIl~tte 171 (598)
T PRK09111 100 HVD-VLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE-------PPPHVKFIFATTE 171 (598)
T ss_pred CCc-eEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh-------CCCCeEEEEEeCC
Confidence 222 2232 22233333332 1456689999987663 34455444433 33456665544 4
Q ss_pred chhhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHH
Q 000302 271 NRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 334 (1698)
Q Consensus 271 ~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 334 (1698)
...+..........+.+..+++++....+.+.+......- -.+....|++.++|-+.-+...-
T Consensus 172 ~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 172 IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444332223356889999999999999988874222111 23567789999999886655443
No 108
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00047 Score=84.82 Aligned_cols=170 Identities=12% Similarity=0.135 Sum_probs=107.4
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc---------------------ccCCEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED---------------------KLFDKV 210 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~~~ 210 (1698)
....+++|.+..++.+.+++..+.. +.+-++|+.|+||||+|+.+++..-.. .+++..
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~ 93 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVL 93 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceE
Confidence 3456789999999999999987665 578899999999999999998865321 134433
Q ss_pred EEh-------HHHHHHHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEe-Cchhhhh
Q 000302 211 VFV-------ERAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTS-RNRDVLC 276 (1698)
Q Consensus 211 ~~~-------~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTt-R~~~v~~ 276 (1698)
.+- +.+..+.+.+. .+++-++|+|++.... ..+.+...+.+ ...++.+|++| +...+..
T Consensus 94 ~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe-------p~~~~~~Il~t~~~~kl~~ 166 (451)
T PRK06305 94 EIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE-------PPQHVKFFLATTEIHKIPG 166 (451)
T ss_pred EeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc-------CCCCceEEEEeCChHhcch
Confidence 221 22222333332 2467789999986552 23444333333 23455566555 3333332
Q ss_pred cccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHH
Q 000302 277 NDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 330 (1698)
Q Consensus 277 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 330 (1698)
........+.++++++++....+.+.+...... --++.+..|++.++|-+--+
T Consensus 167 tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 167 TILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLRDA 219 (451)
T ss_pred HHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 122335688999999999988888776321111 12456788999999976433
No 109
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.73 E-value=1.4e-06 Score=111.63 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=31.6
Q ss_pred cccccccccccCCCccccccCCCcceeeCCCccEEEEeccCCccccCC
Q 000302 1579 FNQLQYLGIDCLPSLTCFCFGRSKNKLEFPSLEQVVVRECPNMEMFSQ 1626 (1698)
Q Consensus 1579 ~~~L~~L~L~~~~~L~~~~~~~~~~~~~~psL~~l~v~~C~~~~~~~~ 1626 (1698)
+.+|+.|++..|...+.-... .....+..++.+++.+|+.+..-..
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLR--CLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred CCccceEecccCccccccchH--HHhhhhhccccCCccCcccccchhh
Confidence 334888888888888776665 2122277788888888888876654
No 110
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.72 E-value=0.00033 Score=77.55 Aligned_cols=149 Identities=19% Similarity=0.210 Sum_probs=87.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhH---H------------HHHHHHHHHccCcEEEEEcCccccc-
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVE---R------------AEKLRQRLKNVKRVLVILDNIWKLL- 240 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~---~------------~~~l~~~l~~~k~~LlvlDdv~~~~- 240 (1698)
...+.|+|..|+|||.|.+++++.......=..++++. - ...+++.+. .-=+|++||++...
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG 111 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC
Confidence 35688999999999999999999876542223455651 1 123333333 34488999997752
Q ss_pred --cccc-ccCcccccccccCCCCCCeEEEEEeCchhh-hhc-------ccCCcceEEccCCCHHHHHHHHHHHhCCCCCC
Q 000302 241 --NLDA-VGIPFGDVKKERNDDRSRCTVLLTSRNRDV-LCN-------DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKA 309 (1698)
Q Consensus 241 --~~~~-~~~~~~~~~~~~~~~~~g~kilvTtR~~~v-~~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 309 (1698)
.|+. +..-+.. + ...|.+||+|++...- ... .+...-.++++++++++-.+++++++....-.
T Consensus 112 ~~~~q~~lf~l~n~----~--~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~ 185 (219)
T PF00308_consen 112 KQRTQEELFHLFNR----L--IESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE 185 (219)
T ss_dssp HHHHHHHHHHHHHH----H--HHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--
T ss_pred chHHHHHHHHHHHH----H--HhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 2322 2111111 0 2356689999955421 110 34445689999999999999999988432111
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHH
Q 000302 310 SDFRVIADEIVRRCGGLPVAIKTIA 334 (1698)
Q Consensus 310 ~~~~~~~~~i~~~c~GlPlai~~~~ 334 (1698)
--++++.-|++.+.+..-.+..+-
T Consensus 186 -l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 186 -LPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp -S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred -CcHHHHHHHHHhhcCCHHHHHHHH
Confidence 235677788888877665554443
No 111
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00042 Score=85.40 Aligned_cols=173 Identities=12% Similarity=0.205 Sum_probs=112.2
Q ss_pred CCcccccchHHHHHHHHHHHhcCCce-EEEEEcCCCchHHHHHHHHHHHHhhc--------------------ccCCEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNVG-MIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVV 211 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 211 (1698)
.....++|.+..++.+..++..++.. ++-++|+.|+||||+|+.+++..-.. .+++. +
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv-~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI-I 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE-E
Confidence 34567899999999999999876654 67899999999999999998865311 12232 2
Q ss_pred EhH-----HHHHHHHHHHc-------cCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEeCch-hhhh
Q 000302 212 FVE-----RAEKLRQRLKN-------VKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLC 276 (1698)
Q Consensus 212 ~~~-----~~~~l~~~l~~-------~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~-~v~~ 276 (1698)
.++ ..+.+++.+.. +++-++|+|++... ...+.+...+-+ ....+++|++|.+. .+..
T Consensus 90 eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE-------pp~~t~FIL~ttd~~kL~~ 162 (535)
T PRK08451 90 EMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE-------PPSYVKFILATTDPLKLPA 162 (535)
T ss_pred EeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh-------cCCceEEEEEECChhhCch
Confidence 221 13445444432 45669999999765 234444444433 33456666666543 3322
Q ss_pred cccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHH
Q 000302 277 NDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 334 (1698)
Q Consensus 277 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 334 (1698)
........+++.+++.++....+.+.+....... -++.+..|++.++|-+.-+..+.
T Consensus 163 tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 163 TILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred HHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHH
Confidence 1122356899999999999888887764322221 24567889999999986655543
No 112
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00046 Score=86.51 Aligned_cols=176 Identities=15% Similarity=0.202 Sum_probs=112.5
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc----------------------ccCCE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED----------------------KLFDK 209 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~----------------------~~F~~ 209 (1698)
....+++|.+..++.|.+++..+.+ +.+.++|+.|+||||+|+.+++..... .++|.
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 3456789999999999999987664 467899999999999999999865421 12332
Q ss_pred EEEh--------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEE-EEeCchhh
Q 000302 210 VVFV--------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVL-LTSRNRDV 274 (1698)
Q Consensus 210 ~~~~--------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kil-vTtR~~~v 274 (1698)
+.+ +.+..+++.+. .+++-++|+|++... ...+.+...+.+ ....+.+| +||....+
T Consensus 90 -ieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-------pp~~~~fIL~tte~~kl 161 (584)
T PRK14952 90 -VELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-------PPEHLIFIFATTEPEKV 161 (584)
T ss_pred -EEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-------CCCCeEEEEEeCChHhh
Confidence 233 22333333332 246669999998765 334444444433 33455555 55555544
Q ss_pred hhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChH-HHHHHHHHH
Q 000302 275 LCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV-AIKTIANAL 337 (1698)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~~~~l 337 (1698)
..........|.+.+++.++..+.+.+.+......- -.+.+..|++.++|-+- |+..+-.++
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 432233457899999999999888888764222111 24556788999999875 444444443
No 113
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00062 Score=86.67 Aligned_cols=172 Identities=14% Similarity=0.193 Sum_probs=113.0
Q ss_pred CcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHh---------------------hcccCCEEE
Q 000302 154 AYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVI---------------------EDKLFDKVV 211 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~F~~~~ 211 (1698)
....++|.+..++.+..++..+.. +.+-++|+.|+||||+|+.++.... ...+|+...
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ 94 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHE 94 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEE
Confidence 456789999999999999987665 4688999999999999999988653 223566543
Q ss_pred Eh----HHHHHHHHHH---H----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEE-EeCchhhhhc
Q 000302 212 FV----ERAEKLRQRL---K----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLL-TSRNRDVLCN 277 (1698)
Q Consensus 212 ~~----~~~~~l~~~l---~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilv-TtR~~~v~~~ 277 (1698)
.- ...+.+++.+ . .+++-++|+|++... ..++.+...+.+ ...++.+|+ ||+...+...
T Consensus 95 ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe-------pp~~tifIL~tt~~~kIl~t 167 (614)
T PRK14971 95 LDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE-------PPSYAIFILATTEKHKILPT 167 (614)
T ss_pred ecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC-------CCCCeEEEEEeCCchhchHH
Confidence 32 1123333332 2 145668899998765 335555544443 334556554 5454544432
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
.......+++.++++++....+.+.+....... -.+.+..|++.++|-.--+...
T Consensus 168 I~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i-~~~al~~La~~s~gdlr~al~~ 222 (614)
T PRK14971 168 ILSRCQIFDFNRIQVADIVNHLQYVASKEGITA-EPEALNVIAQKADGGMRDALSI 222 (614)
T ss_pred HHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 233467899999999999998888774322211 2356788999999977544433
No 114
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00028 Score=87.82 Aligned_cols=172 Identities=15% Similarity=0.190 Sum_probs=109.3
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhcc-------------------cCCEEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK-------------------LFDKVVF 212 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~~ 212 (1698)
....+++|.+..++.+.+++..+.. +.+-++|+.|+||||+|+.+++...... .|.-++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 4467789999999999999987655 4678999999999999999998664321 1222333
Q ss_pred h-----HHHHHHHHHHH-------ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEe-Cchhhhhc
Q 000302 213 V-----ERAEKLRQRLK-------NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTS-RNRDVLCN 277 (1698)
Q Consensus 213 ~-----~~~~~l~~~l~-------~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTt-R~~~v~~~ 277 (1698)
+ ..++.+++.+. +++.-++|+|++... ...+.+...+.+ ....+++|++| ....+...
T Consensus 93 idaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-------pp~~~~fIlattd~~kl~~t 165 (509)
T PRK14958 93 VDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE-------PPSHVKFILATTDHHKLPVT 165 (509)
T ss_pred EcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc-------cCCCeEEEEEECChHhchHH
Confidence 3 12233333322 246678999999875 334444444433 33456666555 33333321
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 332 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 332 (1698)
.......+.+++++.++....+.+.+....... -.+....|++.++|-+.-+..
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 166 VLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHH
Confidence 223356788999999988877777663222221 134567799999998865444
No 115
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.66 E-value=0.00042 Score=83.99 Aligned_cols=167 Identities=17% Similarity=0.252 Sum_probs=96.0
Q ss_pred cccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEE-------Eh-
Q 000302 155 YEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVV-------FV- 213 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-------~~- 213 (1698)
...+.|++..++++.+.+.- ...+-|.++|++|+|||++|+.+++..... |-.+. |+
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~--~i~v~~~~l~~~~~g 207 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--FIRVVGSELVQKFIG 207 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC--EEEeehHHHhHhhcc
Confidence 45678999999999887641 234568999999999999999999876422 22111 11
Q ss_pred HH---HHHHHHHHHccCcEEEEEcCccccc------------cc-ccccCcccccccccCCCCCCeEEEEEeCchhhhhc
Q 000302 214 ER---AEKLRQRLKNVKRVLVILDNIWKLL------------NL-DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN 277 (1698)
Q Consensus 214 ~~---~~~l~~~l~~~k~~LlvlDdv~~~~------------~~-~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~ 277 (1698)
+. ...+.+........+|++||++... +. ..+...+..+ +.. ....+..||.||...+....
T Consensus 208 ~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l-d~~-~~~~~v~VI~aTn~~~~ld~ 285 (389)
T PRK03992 208 EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEM-DGF-DPRGNVKIIAATNRIDILDP 285 (389)
T ss_pred chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhc-ccc-CCCCCEEEEEecCChhhCCH
Confidence 11 1222233333467899999997641 00 0111111110 000 02235677777765433221
Q ss_pred cc----CCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000302 278 DM----NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 327 (1698)
Q Consensus 278 ~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 327 (1698)
.. .-...+.+++.+.++-.++|+.++.......+. ....+++.+.|.-
T Consensus 286 allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~s 337 (389)
T PRK03992 286 AILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGAS 337 (389)
T ss_pred HHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCC
Confidence 11 124578999999999999999887532221111 1345667776644
No 116
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00038 Score=87.28 Aligned_cols=171 Identities=13% Similarity=0.171 Sum_probs=108.1
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhcc-------------------cCCEEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK-------------------LFDKVVF 212 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~~ 212 (1698)
....+++|.+..++.+.+++..+.. +.+-++|+.|+||||+|+.+++....+. .|..+++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 3456789999999999999987654 4678999999999999999988763211 1222233
Q ss_pred h--------HHHHHHHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEe-Cchhhhhc
Q 000302 213 V--------ERAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTS-RNRDVLCN 277 (1698)
Q Consensus 213 ~--------~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTt-R~~~v~~~ 277 (1698)
+ +.+..+.+... .+++-++|+|++.... ..+.+...+.+ ....+++|++| ..+.+...
T Consensus 93 i~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-------pp~~~~fIL~t~d~~kil~t 165 (527)
T PRK14969 93 VDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-------PPEHVKFILATTDPQKIPVT 165 (527)
T ss_pred eeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC-------CCCCEEEEEEeCChhhCchh
Confidence 3 22233333332 2467799999997663 24444444433 33455555555 43333321
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 331 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 331 (1698)
.......+.+++++.++..+.+.+.+..+.... -++....|++.++|.+--+.
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~-~~~al~~la~~s~Gslr~al 218 (527)
T PRK14969 166 VLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF-DATALQLLARAAAGSMRDAL 218 (527)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 122356889999999999888888774222211 24456789999999775433
No 117
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.66 E-value=0.00039 Score=79.84 Aligned_cols=142 Identities=18% Similarity=0.218 Sum_probs=80.8
Q ss_pred ccccchHHHHHHHHHH---Hh------------cCCceEEEEEcCCCchHHHHHHHHHHHHhhcccC--CEEEEh-----
Q 000302 156 EQFDSRMKIFQNIMEV---LK------------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLF--DKVVFV----- 213 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~---l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~~~----- 213 (1698)
..++|.+..++.|.+. .. .+...-+.++|++|+||||+|+.+++.....+.- ..++-+
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 4578888777666433 21 1234567899999999999999999875422111 111211
Q ss_pred ------HHHHHHHHHHHccCcEEEEEcCccccc----------ccccccCcccccccccCCCCCCeEEEEEeCchhhhh-
Q 000302 214 ------ERAEKLRQRLKNVKRVLVILDNIWKLL----------NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC- 276 (1698)
Q Consensus 214 ------~~~~~l~~~l~~~k~~LlvlDdv~~~~----------~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~- 276 (1698)
+....+++.+.+...-+|++|++.... ..+.+...+.+ ......+++++...+...
T Consensus 86 ~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~-------~~~~~~vila~~~~~~~~~ 158 (261)
T TIGR02881 86 VGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED-------NRNEFVLILAGYSDEMDYF 158 (261)
T ss_pred hhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhc-------cCCCEEEEecCCcchhHHH
Confidence 113334444543345689999997531 12223222222 233345556654432210
Q ss_pred -----c-ccCCcceEEccCCCHHHHHHHHHHHhC
Q 000302 277 -----N-DMNSQKFFLIEVLSYEEAWCLFEKIVG 304 (1698)
Q Consensus 277 -----~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 304 (1698)
. .......+.+++++.+|-.+++++.+.
T Consensus 159 ~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 159 LSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred HhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 0 011135688999999999999988874
No 118
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.66 E-value=0.00049 Score=76.29 Aligned_cols=164 Identities=15% Similarity=0.251 Sum_probs=99.7
Q ss_pred ccccchHHHH---HHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-----HHHHHHHHHHH---
Q 000302 156 EQFDSRMKIF---QNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV-----ERAEKLRQRLK--- 224 (1698)
Q Consensus 156 ~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~-----~~~~~l~~~l~--- 224 (1698)
.++||.+..+ --|.+++..+.++.+.+||++|+||||||+.++...+....|-..+-. .....+.+.-+
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~ 217 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEK 217 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHH
Confidence 3455554433 234455566788899999999999999999999987654422222211 11111211111
Q ss_pred --ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEE--EeCchhhh--hcccCCcceEEccCCCHHHHH
Q 000302 225 --NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLL--TSRNRDVL--CNDMNSQKFFLIEVLSYEEAW 296 (1698)
Q Consensus 225 --~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilv--TtR~~~v~--~~~~~~~~~~~l~~L~~~e~~ 296 (1698)
-++|..|.+|.|..- .+-+.+ +|. -.+|..++| ||.++..- ........++.+++|..++..
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD~f---LP~-------VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~ 287 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQDTF---LPH-------VENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVV 287 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhhcc---cce-------eccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHH
Confidence 158999999999654 333333 444 456776654 67665321 113445679999999999999
Q ss_pred HHHHHHh---CC------CCCCCc--h-HHHHHHHHHHhCCChHH
Q 000302 297 CLFEKIV---GD------SAKASD--F-RVIADEIVRRCGGLPVA 329 (1698)
Q Consensus 297 ~Lf~~~~---~~------~~~~~~--~-~~~~~~i~~~c~GlPla 329 (1698)
.++.+.. |+ ...++. + ..+.+-++..|.|-.-+
T Consensus 288 ~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 288 TILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred HHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 9888754 22 122222 1 34566677788886543
No 119
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.64 E-value=0.00024 Score=93.67 Aligned_cols=142 Identities=14% Similarity=0.195 Sum_probs=87.6
Q ss_pred CcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhccc----CCEEEEh----------------
Q 000302 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKL----FDKVVFV---------------- 213 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~~~---------------- 213 (1698)
..+.++||+.+++++++.|......-+.++|++|+|||++|+.++......+- .+..+|.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~ 259 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF 259 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchH
Confidence 34578999999999999988666666779999999999999999998744221 2344443
Q ss_pred -HHHHHHHHHHHccCcEEEEEcCcccccc----------cccccCcccccccccCCCCCCeEEEEEeCchhh----hhc-
Q 000302 214 -ERAEKLRQRLKNVKRVLVILDNIWKLLN----------LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDV----LCN- 277 (1698)
Q Consensus 214 -~~~~~l~~~l~~~k~~LlvlDdv~~~~~----------~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v----~~~- 277 (1698)
.+...+.+.+.+.++.+|++|++..... ...+..+.-. . ..-++|-+|..++. ...
T Consensus 260 e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~-------~-g~i~~IgaTt~~e~~~~~~~d~ 331 (731)
T TIGR02639 260 EERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS-------S-GKLRCIGSTTYEEYKNHFEKDR 331 (731)
T ss_pred HHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh-------C-CCeEEEEecCHHHHHHHhhhhH
Confidence 1222233333334688999999975421 1112111111 1 12344444433221 100
Q ss_pred -ccCCcceEEccCCCHHHHHHHHHHHh
Q 000302 278 -DMNSQKFFLIEVLSYEEAWCLFEKIV 303 (1698)
Q Consensus 278 -~~~~~~~~~l~~L~~~e~~~Lf~~~~ 303 (1698)
....-..+.+++++.++..++++...
T Consensus 332 al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 332 ALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11123578999999999999998765
No 120
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=4.7e-05 Score=59.27 Aligned_cols=41 Identities=39% Similarity=0.622 Sum_probs=27.1
Q ss_pred cccceeecCCCCCCccchHhhccccccEecccCcccccccCc
Q 000302 575 KKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAP 616 (1698)
Q Consensus 575 ~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~ 616 (1698)
++|++|++++|+|..+|.++++|++|++|++++| .++++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 3577777777777777777777777777777777 4655543
No 121
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.60 E-value=5.6e-05 Score=58.83 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=21.0
Q ss_pred ceeEEEecCCCcccCCccccCCCcccEEEccCccCCCc
Q 000302 531 ELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDV 568 (1698)
Q Consensus 531 ~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~ 568 (1698)
+|++|++++|.|+.+|..|++|++|++|++++|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45666666666666655556666666666665555443
No 122
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.00092 Score=85.58 Aligned_cols=174 Identities=15% Similarity=0.189 Sum_probs=111.2
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc---------------------ccCCEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED---------------------KLFDKV 210 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~~~ 210 (1698)
.....++|.+..++.+..++..+.+ +.+.++|+.|+||||+|+.+++..... .++|.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~- 91 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDV- 91 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeE-
Confidence 3456789999999999999886654 567899999999999999999765321 12332
Q ss_pred EEh--------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEeCc-hhhh
Q 000302 211 VFV--------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRN-RDVL 275 (1698)
Q Consensus 211 ~~~--------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~-~~v~ 275 (1698)
+.+ +.+..+.+.+. .+++-++|+|++... ...+.+...+.+ ....+.+|++|.+ ..+.
T Consensus 92 ~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe-------pp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 92 IEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE-------PPPHAIFILATTEVHKVP 164 (585)
T ss_pred EEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc-------CCCCeEEEEEeCChhhhh
Confidence 221 22333333333 146778999998655 334555444433 3345666655533 3333
Q ss_pred hcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 000302 276 CNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIAN 335 (1698)
Q Consensus 276 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 335 (1698)
.........+.+..++.++....+.+.+......- -.+.+..|++.++|.+..+...-.
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL-EPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 21122345788999999999888888774322111 245678999999998876554433
No 123
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.59 E-value=1.2e-05 Score=99.16 Aligned_cols=104 Identities=24% Similarity=0.343 Sum_probs=46.2
Q ss_pred cCCceeEEEecCCCcccCCccccCCCcccEEEccCccCCCccccccccccceeecCCCCCCccchHhhccccccEecccC
Q 000302 528 GMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRN 607 (1698)
Q Consensus 528 ~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~ 607 (1698)
.+++|..|++.+|.|..+...+..+.+|++|++++|.|+.+..+..+..|+.|++++|.|..++. +..+.+|+.+++++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSY 171 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-CccchhhhcccCCc
Confidence 34444444444444444433344444444444444444444444444444444444444444332 33344444444444
Q ss_pred cccccccCc-hhhccCccCceecccCcc
Q 000302 608 CRRLQAIAP-NVISKLSRLEELYMGDSF 634 (1698)
Q Consensus 608 ~~~l~~lp~-~~i~~L~~L~~L~l~~~~ 634 (1698)
| .+..++. . +..+.+|+.+.+.+|.
T Consensus 172 n-~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 172 N-RIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred c-hhhhhhhhh-hhhccchHHHhccCCc
Confidence 4 3333333 1 2344444444444443
No 124
>PRK06620 hypothetical protein; Validated
Probab=97.59 E-value=0.0003 Score=77.31 Aligned_cols=152 Identities=18% Similarity=0.045 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCC--c--eEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHHHHHHHHHHHccCcEEEEEcCccc
Q 000302 163 KIFQNIMEVLKDTN--V--GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVERAEKLRQRLKNVKRVLVILDNIWK 238 (1698)
Q Consensus 163 ~~~~~l~~~l~~~~--~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~ 238 (1698)
.....+.++-.... . +.+.|||+.|+|||+|++.+++.... .++.......+... ..-++++||+..
T Consensus 26 ~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~~~~~~~~~~~--~~d~lliDdi~~ 96 (214)
T PRK06620 26 QAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIKDIFFNEEILE--KYNAFIIEDIEN 96 (214)
T ss_pred HHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-------EEcchhhhchhHHh--cCCEEEEecccc
Confidence 34555555543211 2 56899999999999999998776431 12211111111222 345788999973
Q ss_pred ccccccccCcccccccccCCCCCCeEEEEEeCchhhh------hcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCch
Q 000302 239 LLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL------CNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDF 312 (1698)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~ 312 (1698)
..+ ..+..-+..+ ...|..||+|++..... ...+...-+++++++++++-..++++.+.... -.--
T Consensus 97 ~~~-~~lf~l~N~~------~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~-l~l~ 168 (214)
T PRK06620 97 WQE-PALLHIFNII------NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS-VTIS 168 (214)
T ss_pred chH-HHHHHHHHHH------HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC-CCCC
Confidence 321 1121111100 24567899998754321 00234455899999999998888888874211 1122
Q ss_pred HHHHHHHHHHhCCChHHHH
Q 000302 313 RVIADEIVRRCGGLPVAIK 331 (1698)
Q Consensus 313 ~~~~~~i~~~c~GlPlai~ 331 (1698)
+++..-|++.+.|---++.
T Consensus 169 ~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 169 RQIIDFLLVNLPREYSKII 187 (214)
T ss_pred HHHHHHHHHHccCCHHHHH
Confidence 5677788888877554433
No 125
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.57 E-value=0.00057 Score=90.59 Aligned_cols=165 Identities=13% Similarity=0.128 Sum_probs=98.4
Q ss_pred CCcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcc----cCCEEEEh---------------
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFV--------------- 213 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~~~--------------- 213 (1698)
...+.++||+.++.++++.|......-+.++|++|+||||+|+.++....... ..+..+|.
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge 263 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGE 263 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchH
Confidence 34467899999999999998866666677999999999999999999864321 12344442
Q ss_pred --HHHHHHHHHHHc-cCcEEEEEcCcccccc-------cc--cccCcccccccccCCCCCCeEEEEEeCchhhhh----c
Q 000302 214 --ERAEKLRQRLKN-VKRVLVILDNIWKLLN-------LD--AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC----N 277 (1698)
Q Consensus 214 --~~~~~l~~~l~~-~k~~LlvlDdv~~~~~-------~~--~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~----~ 277 (1698)
.+...+.+.+.+ +++.+|++|++..... -+ .+..|.- ....-++|-||...+... .
T Consensus 264 ~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--------~~G~l~~IgaTT~~e~~~~~~~d 335 (852)
T TIGR03345 264 FENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--------ARGELRTIAATTWAEYKKYFEKD 335 (852)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--------hCCCeEEEEecCHHHHhhhhhcc
Confidence 122233333322 4689999999876521 11 1222211 122345555555432211 0
Q ss_pred --ccCCcceEEccCCCHHHHHHHHHHHhCCCC---CCCchHHHHHHHHHHhCC
Q 000302 278 --DMNSQKFFLIEVLSYEEAWCLFEKIVGDSA---KASDFRVIADEIVRRCGG 325 (1698)
Q Consensus 278 --~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~---~~~~~~~~~~~i~~~c~G 325 (1698)
....-..+.+++++.+++.++++....... .-.-..+....+++.+.+
T Consensus 336 ~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 336 PALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred HHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 112345899999999999999765542101 011123445556666654
No 126
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.56 E-value=0.00016 Score=83.69 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=36.4
Q ss_pred HHHHHhc-CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 168 IMEVLKD-TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 168 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
+++++.. +.-...+|+|++|+||||||+++|+..... +|+.++|+
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~V 204 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIV 204 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEE
Confidence 4444441 334678999999999999999999998865 89999997
No 127
>CHL00181 cbbX CbbX; Provisional
Probab=97.53 E-value=0.0009 Score=77.18 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=70.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhcccC--CEEEEhHH-----------HHHHHHHHHccCcEEEEEcCcccc------
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLF--DKVVFVER-----------AEKLRQRLKNVKRVLVILDNIWKL------ 239 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~~~~~-----------~~~l~~~l~~~k~~LlvlDdv~~~------ 239 (1698)
.+.++|++|+||||+|+.++........- ..++.+.. ....++.+.+...-.|++|++...
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~ 140 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNE 140 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCc
Confidence 47889999999999999999875432111 12333311 122233343334568999999652
Q ss_pred -----cccccccCcccccccccCCCCCCeEEEEEeCchhhhhc-------ccCCcceEEccCCCHHHHHHHHHHHhC
Q 000302 240 -----LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN-------DMNSQKFFLIEVLSYEEAWCLFEKIVG 304 (1698)
Q Consensus 240 -----~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 304 (1698)
...+.+...+.+ ...+.+||+++....+... .......+.+++++.+|..+++.+.+.
T Consensus 141 ~~~~~e~~~~L~~~me~-------~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 141 RDYGSEAIEILLQVMEN-------QRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred cchHHHHHHHHHHHHhc-------CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 111222222222 3455677777764432110 111245789999999999998888873
No 128
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.0012 Score=83.16 Aligned_cols=173 Identities=12% Similarity=0.171 Sum_probs=111.4
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc--------------------ccCCEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVV 211 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 211 (1698)
....+++|.+..++.+..++..+.. +.+-++|+.|+||||+|+.+++..-.. .++|.+.
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~ 92 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIE 92 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEE
Confidence 4467789999999999999987654 468899999999999999999865321 2455432
Q ss_pred Eh-------HHHHHHHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeC-chhhhhc
Q 000302 212 FV-------ERAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSR-NRDVLCN 277 (1698)
Q Consensus 212 ~~-------~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR-~~~v~~~ 277 (1698)
.- +.+..+.+.+. .+++-++|+|++.... .++.+...+.+ ....+.+|++|. ...+...
T Consensus 93 idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe-------pp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 93 IDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE-------PPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred ecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc-------CCCCEEEEEecCChHHhHHH
Confidence 21 22223332222 2566789999987653 35555544443 334566665553 3333321
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
.......+.+.+++.++..+.+.+.+..... .--.+.+..|++.++|-+-.+..+
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1233557899999999988888877632111 112456778999999988654443
No 129
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0016 Score=80.71 Aligned_cols=174 Identities=14% Similarity=0.144 Sum_probs=108.1
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc-------------------ccCCEEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED-------------------KLFDKVVF 212 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~~ 212 (1698)
.....++|.+..++.+.+++..+.. +.+-++|+.|+||||+|+.++...... ..|..++.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 3456788999999999999986554 567789999999999999999865310 01112222
Q ss_pred h--------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEE-EeCchhhhhc
Q 000302 213 V--------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLL-TSRNRDVLCN 277 (1698)
Q Consensus 213 ~--------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilv-TtR~~~v~~~ 277 (1698)
+ +.+..+.+.+. .+++-++|+|+++.. ...+.+...+.+ ......+|+ ||+...+...
T Consensus 93 idaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe-------pp~~~v~Il~tt~~~kl~~t 165 (486)
T PRK14953 93 IDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE-------PPPRTIFILCTTEYDKIPPT 165 (486)
T ss_pred EeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc-------CCCCeEEEEEECCHHHHHHH
Confidence 2 22334444433 246779999998755 233444333333 233445554 4444333321
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIA 334 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 334 (1698)
.......+.+.+++.++....+.+.+...... --.+.+..|++.++|.+..+....
T Consensus 166 I~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 166 ILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12234578999999999888888876321111 124556788999999776555444
No 130
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.0011 Score=71.96 Aligned_cols=177 Identities=19% Similarity=0.161 Sum_probs=103.8
Q ss_pred CCCcccccchHHHHHHHHHHHh-----cCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEE--EhHHHHHHHHHHH
Q 000302 152 YTAYEQFDSRMKIFQNIMEVLK-----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVV--FVERAEKLRQRLK 224 (1698)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--~~~~~~~l~~~l~ 224 (1698)
|....+|+|.++.++++.=.+. .....-|-++|++|.||||||.-+++...+. +.... -++....+..-|.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k~tsGp~leK~gDlaaiLt 99 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LKITSGPALEKPGDLAAILT 99 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eEecccccccChhhHHHHHh
Confidence 4556789999999888876665 2345678999999999999999999987653 11100 0122222322222
Q ss_pred c-cCcEEEEEcCccccc-cccccc-Ccccc-cccccCCCCCCeE-----------EEEEeCchhhhhc-ccCCcceEEcc
Q 000302 225 N-VKRVLVILDNIWKLL-NLDAVG-IPFGD-VKKERNDDRSRCT-----------VLLTSRNRDVLCN-DMNSQKFFLIE 288 (1698)
Q Consensus 225 ~-~k~~LlvlDdv~~~~-~~~~~~-~~~~~-~~~~~~~~~~g~k-----------ilvTtR~~~v~~~-~~~~~~~~~l~ 288 (1698)
. .+.=.+.+|.+.... ..+++. .+.-+ -.|...+.+.++| |=.|||.-.+... ...-..+.+++
T Consensus 100 ~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rle 179 (332)
T COG2255 100 NLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLE 179 (332)
T ss_pred cCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeee
Confidence 1 244456678876541 111111 00000 0111222334444 3468886544331 01124577888
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000302 289 VLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 331 (1698)
Q Consensus 289 ~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 331 (1698)
.-+.+|-.+...+.|+.-. -.--++-|.+|+++..|-|--..
T Consensus 180 fY~~~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 180 FYTVEELEEIVKRSAKILG-IEIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred cCCHHHHHHHHHHHHHHhC-CCCChHHHHHHHHhccCCcHHHH
Confidence 9999999999999884211 11124568899999999996433
No 131
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.00097 Score=84.82 Aligned_cols=173 Identities=13% Similarity=0.196 Sum_probs=110.4
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc--------------------ccCCEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVV 211 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 211 (1698)
....+++|.+..++.+.+++..+++ +.+-++|+.|+||||+|+.+++..... .++|.+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~e 92 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFE 92 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeee
Confidence 4467789999999999999987665 567899999999999999998875321 1334332
Q ss_pred Eh-------HHHHHHHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEE-EEeCchhhhhc
Q 000302 212 FV-------ERAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVL-LTSRNRDVLCN 277 (1698)
Q Consensus 212 ~~-------~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kil-vTtR~~~v~~~ 277 (1698)
+- +.+..+++.+. .+++-++|+|++.... ..+.+...+-+ ....+.+| +||....+...
T Consensus 93 id~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe-------pp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 93 IDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE-------PPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred eeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc-------CCCCeEEEEEeCChhhhhHH
Confidence 21 23444554443 2456689999987652 34444443333 23355555 55555555432
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh-HHHHHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP-VAIKTI 333 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~ 333 (1698)
.......+.+++++.++....+...+......- -.+.+..|++.++|-. .|+..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 233456788999999998888877664222111 2455778999999966 444444
No 132
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.48 E-value=0.00071 Score=83.22 Aligned_cols=151 Identities=16% Similarity=0.179 Sum_probs=93.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHH-------HH----------HHHHHHHccCcEEEEEcCccccc
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVER-------AE----------KLRQRLKNVKRVLVILDNIWKLL 240 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~-------~~----------~l~~~l~~~k~~LlvlDdv~~~~ 240 (1698)
.-+.|+|..|+|||+|++.+++.......-..++++.. .. .+++++ .+.-+||+||+....
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 45889999999999999999997654322234455511 11 111111 133489999996542
Q ss_pred ---cc-ccccCcccccccccCCCCCCeEEEEEeCch---------hhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCC
Q 000302 241 ---NL-DAVGIPFGDVKKERNDDRSRCTVLLTSRNR---------DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSA 307 (1698)
Q Consensus 241 ---~~-~~~~~~~~~~~~~~~~~~~g~kilvTtR~~---------~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 307 (1698)
.+ +.+..-+... ...|..||+|+... .+.. .+...-.+.+++++.++-.+++++++....
T Consensus 220 ~k~~~~e~lf~l~N~~------~~~~k~iIltsd~~P~~l~~l~~rL~S-R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g 292 (450)
T PRK14087 220 YKEKTNEIFFTIFNNF------IENDKQLFFSSDKSPELLNGFDNRLIT-RFNMGLSIAIQKLDNKTATAIIKKEIKNQN 292 (450)
T ss_pred CCHHHHHHHHHHHHHH------HHcCCcEEEECCCCHHHHhhccHHHHH-HHhCCceeccCCcCHHHHHHHHHHHHHhcC
Confidence 22 2232222210 12345688886543 1111 344456788999999999999999884221
Q ss_pred C-CCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000302 308 K-ASDFRVIADEIVRRCGGLPVAIKTIANAL 337 (1698)
Q Consensus 308 ~-~~~~~~~~~~i~~~c~GlPlai~~~~~~l 337 (1698)
. ..--+++..-|++.++|.|-.+..+...+
T Consensus 293 l~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 293 IKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred CCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 1 12336788899999999998877665443
No 133
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.48 E-value=0.00069 Score=81.95 Aligned_cols=166 Identities=17% Similarity=0.243 Sum_probs=95.6
Q ss_pred CcccccchHHHHHHHHHHHh----c---------CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEE-------Eh
Q 000302 154 AYEQFDSRMKIFQNIMEVLK----D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVV-------FV 213 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-------~~ 213 (1698)
.+.++.|.+..++++.+++. . ...+-+.++|++|+|||++|+.+++..... |-.+. |+
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--fi~V~~seL~~k~~ 258 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--FLRVVGSELIQKYL 258 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--EEEEecchhhhhhc
Confidence 34567899998888888764 1 134568899999999999999999976432 32221 11
Q ss_pred -HH---HHHHHHHHHccCcEEEEEcCcccccc------------cc-cccCcccccccccCCCCCCeEEEEEeCchhhhh
Q 000302 214 -ER---AEKLRQRLKNVKRVLVILDNIWKLLN------------LD-AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC 276 (1698)
Q Consensus 214 -~~---~~~l~~~l~~~k~~LlvlDdv~~~~~------------~~-~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~ 276 (1698)
.. ...+.+....+.+.+|+||+++.... .. .+...+..+ +.. ....+.+||+||...+...
T Consensus 259 Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L-dg~-~~~~~V~VI~ATNr~d~LD 336 (438)
T PTZ00361 259 GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL-DGF-DSRGDVKVIMATNRIESLD 336 (438)
T ss_pred chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH-hhh-cccCCeEEEEecCChHHhh
Confidence 11 22222333335778999999864310 00 000000000 000 0234567888887654433
Q ss_pred ccc----CCcceEEccCCCHHHHHHHHHHHhCCCC--CCCchHHHHHHHHHHhCCCh
Q 000302 277 NDM----NSQKFFLIEVLSYEEAWCLFEKIVGDSA--KASDFRVIADEIVRRCGGLP 327 (1698)
Q Consensus 277 ~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~GlP 327 (1698)
... .....+.+...+.++..++|+.++.... ...++ .+++..+.|+-
T Consensus 337 paLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~s 389 (438)
T PTZ00361 337 PALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDELS 389 (438)
T ss_pred HHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCCC
Confidence 211 1245788999999999999998874322 22233 34555555544
No 134
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.47 E-value=2.8e-05 Score=96.05 Aligned_cols=80 Identities=25% Similarity=0.418 Sum_probs=37.3
Q ss_pred cCCceeEEEecCCCcccCCccccCCCcccEEEccCccCCCccccccccccceeecCCCCCCccchH-hhccccccEeccc
Q 000302 528 GMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPRE-IGQLVQLRLLDLR 606 (1698)
Q Consensus 528 ~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~Ls~~~i~~LP~~-i~~L~~L~~L~L~ 606 (1698)
.+.+|++|++++|.|.++.. +..+..|+.|++++|.+..+..+..+..|+.+++++|.+..++.. ...+.+|+.+.+.
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred hhhcchheeccccccccccc-hhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 34445555555554444432 344444445555555444444444444455555554444444332 3444444444444
Q ss_pred Cc
Q 000302 607 NC 608 (1698)
Q Consensus 607 ~~ 608 (1698)
++
T Consensus 195 ~n 196 (414)
T KOG0531|consen 195 GN 196 (414)
T ss_pred CC
Confidence 44
No 135
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.47 E-value=0.00023 Score=79.64 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=32.9
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
....++|+|++|+|||||++.+++..... +|+.++|+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v 51 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIV 51 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEE
Confidence 45689999999999999999999988765 89999886
No 136
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.0019 Score=81.83 Aligned_cols=171 Identities=17% Similarity=0.183 Sum_probs=109.9
Q ss_pred CCcccccchHHHHHHHHHHHhcCC-ceEEEEEcCCCchHHHHHHHHHHHHhh--------------------cccCCEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIE--------------------DKLFDKVV 211 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~F~~~~ 211 (1698)
.....++|.+..++.+.+++..++ .+.+-++|+.|+||||+|+.+++.... ..++|.+.
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~e 92 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIE 92 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEE
Confidence 346778999999999999998654 456788999999999999999876532 12455432
Q ss_pred E-------hHHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEE-EEeCchhhhhc
Q 000302 212 F-------VERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVL-LTSRNRDVLCN 277 (1698)
Q Consensus 212 ~-------~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kil-vTtR~~~v~~~ 277 (1698)
. ++.+..++..+. .+++-++|+|++... ..++.+...+.+ ......+| .||....+...
T Consensus 93 idaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-------pp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 93 IDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-------PPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred eeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC-------CCCCeEEEEEeCChhhCcHH
Confidence 2 123344444443 256778899998765 335555443333 23344444 45444444332
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 331 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 331 (1698)
.......+.+.+++.++....+...+......- -.+.+..|++.++|-+..+.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i-~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEY-EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 223356788999999999888888774222111 14557788999998776444
No 137
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.44 E-value=0.00076 Score=90.07 Aligned_cols=141 Identities=16% Similarity=0.234 Sum_probs=87.4
Q ss_pred cccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcc----cCCEEEEh-----------------
Q 000302 155 YEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFV----------------- 213 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~~~----------------- 213 (1698)
...++||+++++.+++.|.....+-+.++|++|+|||++|+.++......+ .-+..+|.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e 257 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFE 257 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHH
Confidence 356899999999999999865555667999999999999999998865321 11344554
Q ss_pred HHHHHHHHHHHccCcEEEEEcCcccccc---------cccccCcccccccccCCCCCCeEEEEEeCchhhhh----c--c
Q 000302 214 ERAEKLRQRLKNVKRVLVILDNIWKLLN---------LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC----N--D 278 (1698)
Q Consensus 214 ~~~~~l~~~l~~~k~~LlvlDdv~~~~~---------~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~----~--~ 278 (1698)
.+...+.+.+.+.++.+|++|++..... ...+..|.- ....-++|.+|..++... . .
T Consensus 258 ~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l--------~rg~l~~IgaTt~~ey~~~ie~D~aL 329 (821)
T CHL00095 258 ERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL--------ARGELQCIGATTLDEYRKHIEKDPAL 329 (821)
T ss_pred HHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH--------hCCCcEEEEeCCHHHHHHHHhcCHHH
Confidence 1223333444445789999999964421 111211111 112234555555443211 0 1
Q ss_pred cCCcceEEccCCCHHHHHHHHHHHh
Q 000302 279 MNSQKFFLIEVLSYEEAWCLFEKIV 303 (1698)
Q Consensus 279 ~~~~~~~~l~~L~~~e~~~Lf~~~~ 303 (1698)
......+.+...+.++...+++...
T Consensus 330 ~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 330 ERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred HhcceEEecCCCCHHHHHHHHHHHH
Confidence 1224567889999999888877543
No 138
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0064 Score=71.06 Aligned_cols=168 Identities=12% Similarity=0.152 Sum_probs=110.3
Q ss_pred cccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhh--------------cccCCEEEE-------
Q 000302 155 YEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIE--------------DKLFDKVVF------- 212 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~--------------~~~F~~~~~------- 212 (1698)
...++|.+..++.+.+.+..+.+ +..-++|+.|+||+++|..+++..-. .+|-|....
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 35678999999999999987764 79999999999999999999886532 223332211
Q ss_pred -----------------------hHHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCe
Q 000302 213 -----------------------VERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRC 263 (1698)
Q Consensus 213 -----------------------~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~ 263 (1698)
++.+..+.+.+. .+++-++|+|++... ...+.+...+-+ ..+..
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE-------Pp~~~ 155 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-------PGNGT 155 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC-------CCCCe
Confidence 122334444443 257779999998766 234555444443 22333
Q ss_pred EEEEEeCchhhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 264 TVLLTSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 264 kilvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
-|++|++...+..........+.+.++++++..+.+.+....... ......++..++|-|..+...
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHHH
Confidence 444554444444323345678999999999999999987532111 111357899999999765543
No 139
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.44 E-value=0.0013 Score=79.07 Aligned_cols=170 Identities=15% Similarity=0.230 Sum_probs=96.9
Q ss_pred CcccccchHHHHHHHHHHHh----c---------CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEE-------Eh
Q 000302 154 AYEQFDSRMKIFQNIMEVLK----D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVV-------FV 213 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-------~~ 213 (1698)
...++.|.+..+++|.+.+. . ...+-|.++|++|+|||++|+.+++.... .|-.+. |+
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~--~fi~i~~s~l~~k~~ 220 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA--TFIRVVGSEFVQKYL 220 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CEEEEehHHHHHHhc
Confidence 34567898888888887664 1 13467899999999999999999987542 232221 11
Q ss_pred -H---HHHHHHHHHHccCcEEEEEcCccccc------------ccccccCcccccccccCCCCCCeEEEEEeCchhhhhc
Q 000302 214 -E---RAEKLRQRLKNVKRVLVILDNIWKLL------------NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN 277 (1698)
Q Consensus 214 -~---~~~~l~~~l~~~k~~LlvlDdv~~~~------------~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~ 277 (1698)
+ ....+........+.+|++|+++... ........+-...+.. ....+..||+||...+....
T Consensus 221 ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~-~~~~~v~VI~aTN~~d~LDp 299 (398)
T PTZ00454 221 GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF-DQTTNVKVIMATNRADTLDP 299 (398)
T ss_pred chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc-CCCCCEEEEEecCCchhCCH
Confidence 1 12223333334578899999987531 0000100010000000 02346678888876543321
Q ss_pred c-c---CCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChH
Q 000302 278 D-M---NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV 328 (1698)
Q Consensus 278 ~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 328 (1698)
. . .-...+.++..+.++-.++|+.........++. -..++++...|.--
T Consensus 300 AllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~sg 352 (398)
T PTZ00454 300 ALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKISA 352 (398)
T ss_pred HHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCCH
Confidence 1 1 124578899999999888888776432222111 13456677766643
No 140
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.002 Score=82.02 Aligned_cols=174 Identities=13% Similarity=0.163 Sum_probs=109.7
Q ss_pred CCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhcc----------------------cCCE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDK----------------------LFDK 209 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------------~F~~ 209 (1698)
.....++|.+..++.+..++..+.. +.+-++|+.|+||||+|+.+++..-... |.|.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~ 92 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDV 92 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccE
Confidence 3456788999999999999987653 6788999999999999999998764321 1122
Q ss_pred EEEh--------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEe-Cchhh
Q 000302 210 VVFV--------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTS-RNRDV 274 (1698)
Q Consensus 210 ~~~~--------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTt-R~~~v 274 (1698)
+.+ +.+..+.+.+. .+++-++|+|++... ..++.+...+.+ ....+.+|++| ....+
T Consensus 93 -~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe-------Pp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 93 -IEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE-------PPPRVVFVLATTDPQRV 164 (620)
T ss_pred -EEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc-------CCcCeEEEEEeCChhhh
Confidence 111 23333333332 145668999999765 345555444433 23445555444 43333
Q ss_pred hhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 000302 275 LCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIAN 335 (1698)
Q Consensus 275 ~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 335 (1698)
..........+.+..++.++....+.+.+......- -.+.+..|++.++|-+..+..+-.
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 321233456788889999998888887764322111 135578899999998865554433
No 141
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.41 E-value=0.0015 Score=75.55 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=69.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhcccC--CEEEEhHH-----------HHHHHHHHHccCcEEEEEcCcccc------
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLF--DKVVFVER-----------AEKLRQRLKNVKRVLVILDNIWKL------ 239 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~~~~~-----------~~~l~~~l~~~k~~LlvlDdv~~~------ 239 (1698)
-+.++|++|+||||+|+.++......... ...+.+.. ...+++.+.+...-+|+||++...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~ 139 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNE 139 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCc
Confidence 57899999999999999888766432211 12333311 122333344334578899999632
Q ss_pred -----cccccccCcccccccccCCCCCCeEEEEEeCchhhhhc-cc------CCcceEEccCCCHHHHHHHHHHHhC
Q 000302 240 -----LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN-DM------NSQKFFLIEVLSYEEAWCLFEKIVG 304 (1698)
Q Consensus 240 -----~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~-~~------~~~~~~~l~~L~~~e~~~Lf~~~~~ 304 (1698)
..++.+...+.+ ...+.+||+++.....-.. .. .....+.+++++.+|-..++...+.
T Consensus 140 ~~~~~~~~~~Ll~~le~-------~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 140 RDYGQEAIEILLQVMEN-------QRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred cchHHHHHHHHHHHHhc-------CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 112223222322 3456677777654322110 00 1145789999999999999888773
No 142
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.38 E-value=1.6e-05 Score=95.19 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=101.1
Q ss_pred ChhhhccCCceeEEEecCCCcccCC------ccccC--------------------------CCcccEEEccCccCCCc-
Q 000302 522 PDLFFEGMNELRVVHFTRTCFLSLP------SSLVC--------------------------LISLRTLSLEGCQVGDV- 568 (1698)
Q Consensus 522 ~~~~f~~l~~LrvL~L~~~~i~~lp------~~i~~--------------------------L~~Lr~L~L~~~~l~~~- 568 (1698)
|-++| .++.||+|.|.++.+..+- ..+.+ ...|.+-+.++|.+..+
T Consensus 102 pi~if-pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD 180 (1096)
T KOG1859|consen 102 PISIF-PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD 180 (1096)
T ss_pred Cceec-cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence 44443 4889999999998765321 00000 01255555666666655
Q ss_pred cccccccccceeecCCCCCCccchHhhccccccEecccCcccccccCchhhccCccCceecccCcccccccccCCCccch
Q 000302 569 AIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASL 648 (1698)
Q Consensus 569 ~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 648 (1698)
.++.-+.+|+.|||++|++.+.- .+..+.+|+||||+.| .++.+|.-...... |+.|.+++|.+. .+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~----------tL 247 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALT----------TL 247 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHH----------hh
Confidence 57777889999999999888776 6889999999999998 68888863333333 888998887654 45
Q ss_pred hhhCCCCCCCEEEEEeccccccchhh---hhhccceeEE
Q 000302 649 VELKGLSKLTTLEIHIRDARIMPQDL---ISMKLEIFRM 684 (1698)
Q Consensus 649 ~~L~~L~~L~~L~l~~~~~~~~~~~~---~~~~L~~l~~ 684 (1698)
..+.+|.+|+.|+++.|-+.....-. .+..|..|.+
T Consensus 248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L 286 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL 286 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence 66778888899999988665544332 3344444443
No 143
>PF14516 AAA_35: AAA-like domain
Probab=97.37 E-value=0.035 Score=65.96 Aligned_cols=181 Identities=14% Similarity=0.153 Sum_probs=108.6
Q ss_pred CCCcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh------------------
Q 000302 152 YTAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV------------------ 213 (1698)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~------------------ 213 (1698)
+.+...++.|...-+++.+.+.+++ ..+.|.|+-.+|||+|...+.+..+.. .+.++ ++
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l~~~-~~~~v-~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERLQQQ-GYRCV-YIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHHHHC-CCEEE-EEEeecCCCcccCCHHHHHH
Confidence 4455667899878888888887643 689999999999999999999888754 23322 22
Q ss_pred ----------------------------HHHHHHHHHH-Hc-cCcEEEEEcCcccccccc----cccCcccccccccC-C
Q 000302 214 ----------------------------ERAEKLRQRL-KN-VKRVLVILDNIWKLLNLD----AVGIPFGDVKKERN-D 258 (1698)
Q Consensus 214 ----------------------------~~~~~l~~~l-~~-~k~~LlvlDdv~~~~~~~----~~~~~~~~~~~~~~-~ 258 (1698)
.....+.+.+ .+ +++.+|++|+|+...+.. .+...+...-..+. .
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 0001122222 11 589999999997653211 11111100000000 0
Q ss_pred CCCCe--EEEEEeCchhhhhc----ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000302 259 DRSRC--TVLLTSRNRDVLCN----DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 332 (1698)
Q Consensus 259 ~~~g~--kilvTtR~~~v~~~----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 332 (1698)
..... -|++.+........ ..+....++|++++.+|...|.++.-.... .+..++|...+||+|.-+..
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-----~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-----QEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-----HHHHHHHHHHHCCCHHHHHH
Confidence 01111 12222211111110 223356888999999999999887643211 22378899999999999999
Q ss_pred HHHHHhcC
Q 000302 333 IANALKNK 340 (1698)
Q Consensus 333 ~~~~l~~~ 340 (1698)
++..+...
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99999664
No 144
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.37 E-value=0.00095 Score=79.54 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=83.0
Q ss_pred CCCcccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-HHHHHHHHHHH-----
Q 000302 152 YTAYEQFDSRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV-ERAEKLRQRLK----- 224 (1698)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~-~~~~~l~~~l~----- 224 (1698)
|.....++|.+...+.+..++..+.. .++.++|+.|+||||+|+.+++..... |-.+-.. ...+.+++.+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~--~~~i~~~~~~~~~i~~~l~~~~~~ 94 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE--VLFVNGSDCRIDFVRNRLTRFAST 94 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc--ceEeccCcccHHHHHHHHHHHHHh
Confidence 34567789999999999999986654 577779999999999999999875311 1100000 11222222221
Q ss_pred ---ccCcEEEEEcCcccc--ccc-ccccCcccccccccCCCCCCeEEEEEeCchhhh-hcccCCcceEEccCCCHHHHHH
Q 000302 225 ---NVKRVLVILDNIWKL--LNL-DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL-CNDMNSQKFFLIEVLSYEEAWC 297 (1698)
Q Consensus 225 ---~~k~~LlvlDdv~~~--~~~-~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~-~~~~~~~~~~~l~~L~~~e~~~ 297 (1698)
.+.+-++|+||+... .+. +.+...+.. ...++++|+||...... .........+.++..+.++..+
T Consensus 95 ~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~-------~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~ 167 (316)
T PHA02544 95 VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA-------YSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIE 167 (316)
T ss_pred hcccCCCeEEEEECcccccCHHHHHHHHHHHHh-------cCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHH
Confidence 134668899999755 111 222211222 34567888888654211 1111223467777778877766
Q ss_pred HHHH
Q 000302 298 LFEK 301 (1698)
Q Consensus 298 Lf~~ 301 (1698)
++..
T Consensus 168 il~~ 171 (316)
T PHA02544 168 MMKQ 171 (316)
T ss_pred HHHH
Confidence 6544
No 145
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0026 Score=74.69 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=92.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhc--------------------ccCCEEEEh----------HHHHHHHHHHH--
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVVFV----------ERAEKLRQRLK-- 224 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~~~----------~~~~~l~~~l~-- 224 (1698)
.+.+-++|+.|+||||+|..++...--+ .|.|..... +.+..+.+.+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 4678899999999999999998866432 244443321 33334444433
Q ss_pred --ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEeCch-hhhhcccCCcceEEccCCCHHHHHHHH
Q 000302 225 --NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLSYEEAWCLF 299 (1698)
Q Consensus 225 --~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf 299 (1698)
++++-.+|+|+++.. ...+.+...+-+ ...++.+|+||.+. .+..........+.+.+++.+++.+.+
T Consensus 102 ~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-------Pp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L 174 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNRNAANALLKSLEE-------PSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWL 174 (328)
T ss_pred cccCCCeEEEECChhhCCHHHHHHHHHHHhC-------CCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 234555678999876 345555544443 33566777777665 333222344668999999999999888
Q ss_pred HHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 300 EKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
.+..+. . ..+.+..+++.++|-|..+..+
T Consensus 175 ~~~~~~-~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 175 QQALPE-S----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHhccc-C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 876421 1 1334567889999999765544
No 146
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.27 E-value=0.0032 Score=77.43 Aligned_cols=147 Identities=19% Similarity=0.227 Sum_probs=87.3
Q ss_pred CcccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCchHHHHHHHHHHHHhhccc---CCEEE------
Q 000302 154 AYEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKL---FDKVV------ 211 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~------ 211 (1698)
....+.|.+..++++.+.+.- ...+-|.++|++|+|||++|+.+++.....-. +....
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 345677899999998887641 12456899999999999999999998643200 01111
Q ss_pred ------Eh----HHHHHHHHHHH----ccCcEEEEEcCccccc---------cc-----ccccCcccccccccCCCCCCe
Q 000302 212 ------FV----ERAEKLRQRLK----NVKRVLVILDNIWKLL---------NL-----DAVGIPFGDVKKERNDDRSRC 263 (1698)
Q Consensus 212 ------~~----~~~~~l~~~l~----~~k~~LlvlDdv~~~~---------~~-----~~~~~~~~~~~~~~~~~~~g~ 263 (1698)
|+ .....+.+... .+++++|++|+++... +. ..+...+.. .. ...+.
T Consensus 260 ~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg----l~-~~~~V 334 (512)
T TIGR03689 260 PELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG----VE-SLDNV 334 (512)
T ss_pred hhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc----cc-cCCce
Confidence 11 11222323322 2478999999997541 11 111111111 00 12345
Q ss_pred EEEEEeCchhhhhccc----CCcceEEccCCCHHHHHHHHHHHhCC
Q 000302 264 TVLLTSRNRDVLCNDM----NSQKFFLIEVLSYEEAWCLFEKIVGD 305 (1698)
Q Consensus 264 kilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~ 305 (1698)
.||.||-..+.....+ .-...+.++..+.++..++|+++...
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 5666665443322111 12456899999999999999998753
No 147
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.26 E-value=0.0013 Score=81.07 Aligned_cols=145 Identities=18% Similarity=0.245 Sum_probs=87.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHH---HH------------HHHHHHHccCcEEEEEcCcccccc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVER---AE------------KLRQRLKNVKRVLVILDNIWKLLN 241 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~---~~------------~l~~~l~~~k~~LlvlDdv~~~~~ 241 (1698)
...+.|+|+.|+|||+||+.+++.......=..++++.. .. .+++.+. +.-+|||||+.....
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 356899999999999999999998765421123455511 11 1222332 233889999975421
Q ss_pred ---c-ccccCcccccccccCCCCCCeEEEEEeCch-h--------hhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCC
Q 000302 242 ---L-DAVGIPFGDVKKERNDDRSRCTVLLTSRNR-D--------VLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAK 308 (1698)
Q Consensus 242 ---~-~~~~~~~~~~~~~~~~~~~g~kilvTtR~~-~--------v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 308 (1698)
+ +.+...+..+ ...|..||+|+... . +.. .+.....+.+++.+.++-..++++++.....
T Consensus 214 ~~~~~~~l~~~~n~~------~~~~~~iiits~~~p~~l~~l~~~l~S-Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~ 286 (405)
T TIGR00362 214 KERTQEEFFHTFNAL------HENGKQIVLTSDRPPKELPGLEERLRS-RFEWGLVVDIEPPDLETRLAILQKKAEEEGL 286 (405)
T ss_pred CHHHHHHHHHHHHHH------HHCCCCEEEecCCCHHHHhhhhhhhhh-hccCCeEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 1 1222112110 12455678877542 1 111 2333457899999999999999998853221
Q ss_pred CCchHHHHHHHHHHhCCChHHHH
Q 000302 309 ASDFRVIADEIVRRCGGLPVAIK 331 (1698)
Q Consensus 309 ~~~~~~~~~~i~~~c~GlPlai~ 331 (1698)
.--+++...|++.+.|..-.+.
T Consensus 287 -~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 287 -ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred -CCCHHHHHHHHHhcCCCHHHHH
Confidence 1125778888999888766433
No 148
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.26 E-value=0.00015 Score=93.01 Aligned_cols=88 Identities=23% Similarity=0.377 Sum_probs=41.6
Q ss_pred cChhhhccCCceeEEEecCCCcc--cCCccccCCCcccEEEccCccCCCccccccccccceeecCCCCCCccc--hHhhc
Q 000302 521 IPDLFFEGMNELRVVHFTRTCFL--SLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLP--REIGQ 596 (1698)
Q Consensus 521 i~~~~f~~l~~LrvL~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~Ls~~~i~~LP--~~i~~ 596 (1698)
+|..+..-++.||.|.+++-.+. .+-.-..++++|+.||+|++.++.+..|++|+|||+|.+.+-.+..-+ ..+.+
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence 34444444455555555544332 112223344555555555555555555555555555555544333222 23455
Q ss_pred cccccEecccCc
Q 000302 597 LVQLRLLDLRNC 608 (1698)
Q Consensus 597 L~~L~~L~L~~~ 608 (1698)
|++|++||+|..
T Consensus 219 L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 219 LKKLRVLDISRD 230 (699)
T ss_pred ccCCCeeecccc
Confidence 555555555544
No 149
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00083 Score=87.11 Aligned_cols=140 Identities=16% Similarity=0.232 Sum_probs=87.9
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcc----cCCEEEEh-----------------H
Q 000302 156 EQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFV-----------------E 214 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~~~-----------------~ 214 (1698)
..++||+.+++++++.|......-+.++|++|+|||++|+.++....... ..++.+|. .
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~ 265 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEK 265 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHH
Confidence 45899999999999998865445567899999999999999998753321 12445554 1
Q ss_pred HHHHHHHHHHccCcEEEEEcCccccc----------ccccccCcccccccccCCCCCCeEEEEEeCchhhhhc------c
Q 000302 215 RAEKLRQRLKNVKRVLVILDNIWKLL----------NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN------D 278 (1698)
Q Consensus 215 ~~~~l~~~l~~~k~~LlvlDdv~~~~----------~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~------~ 278 (1698)
+...+.+.+.+.++.+|++|++.... +...+..++.. ...-+||-+|..++.... .
T Consensus 266 rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--------~g~i~vIgATt~~E~~~~~~~D~AL 337 (758)
T PRK11034 266 RFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--------SGKIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_pred HHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--------CCCeEEEecCChHHHHHHhhccHHH
Confidence 12233344444567899999997541 11112222221 223445555544332110 1
Q ss_pred cCCcceEEccCCCHHHHHHHHHHHh
Q 000302 279 MNSQKFFLIEVLSYEEAWCLFEKIV 303 (1698)
Q Consensus 279 ~~~~~~~~l~~L~~~e~~~Lf~~~~ 303 (1698)
...-..+.++..+.+++.++++...
T Consensus 338 ~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 338 ARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1123578999999999999988765
No 150
>PRK10536 hypothetical protein; Provisional
Probab=97.22 E-value=0.0024 Score=70.23 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=45.1
Q ss_pred CcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
+...+.+|......++.++.+. .+|.+.|++|+|||+||..++.+.-..+.|+.++.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~ 110 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVT 110 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEe
Confidence 3445678888888888888764 499999999999999999999864323457766665
No 151
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.18 E-value=0.0043 Score=78.33 Aligned_cols=170 Identities=16% Similarity=0.188 Sum_probs=93.6
Q ss_pred CCcccccchHHHHHHHHHHHh---c---------CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEE---Eh----
Q 000302 153 TAYEQFDSRMKIFQNIMEVLK---D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVV---FV---- 213 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---~~---- 213 (1698)
....+++|.+..++++.+++. . ...+-+-++|++|+|||++|+.++...... |-.+- |.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--~~~i~~~~~~~~~~ 129 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--FFSISGSDFVEMFV 129 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC--eeeccHHHHHHHHh
Confidence 345677888877766655443 1 123458899999999999999999875432 22111 11
Q ss_pred ----HHHHHHHHHHHccCcEEEEEcCcccccc------------cccccCcccccccccCCCCCCeEEEEEeCchhhhhc
Q 000302 214 ----ERAEKLRQRLKNVKRVLVILDNIWKLLN------------LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCN 277 (1698)
Q Consensus 214 ----~~~~~l~~~l~~~k~~LlvlDdv~~~~~------------~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~ 277 (1698)
.....+.+..+...+.+|++||++.... +......+-...+.. ....+-.||.||...+....
T Consensus 130 g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~-~~~~~v~vI~aTn~~~~ld~ 208 (495)
T TIGR01241 130 GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF-GTNTGVIVIAATNRPDVLDP 208 (495)
T ss_pred cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc-cCCCCeEEEEecCChhhcCH
Confidence 1222333333334678999999966411 111100000000000 02345566667755432221
Q ss_pred cc----CCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000302 278 DM----NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 327 (1698)
Q Consensus 278 ~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 327 (1698)
.+ .-...+.++..+.++-.++|+.........++ ....++++.+.|.-
T Consensus 209 al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 209 ALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred HHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 11 12457889999998889999888753222111 12347888888744
No 152
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.18 E-value=0.0021 Score=85.60 Aligned_cols=142 Identities=16% Similarity=0.214 Sum_probs=85.5
Q ss_pred CcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcc----cCCEEEEh----------------
Q 000302 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFV---------------- 213 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~~~---------------- 213 (1698)
..+.++||+.++..+++.|......-+.++|++|+||||+|+.++....... ..+..+|.
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~ 255 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF 255 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhh
Confidence 3456899999999999999866666777999999999999999998764321 11233332
Q ss_pred -HHHHHHHHHHH-ccCcEEEEEcCcccccc---------cccccCcccccccccCCCCCCeEEEEEeCchhhhh----c-
Q 000302 214 -ERAEKLRQRLK-NVKRVLVILDNIWKLLN---------LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC----N- 277 (1698)
Q Consensus 214 -~~~~~l~~~l~-~~k~~LlvlDdv~~~~~---------~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~----~- 277 (1698)
.+...+.+.+. .+++.+|++|++..... ...+..|.- ....-++|-+|...+... .
T Consensus 256 e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--------~~g~l~~IgaTt~~e~r~~~~~d~ 327 (857)
T PRK10865 256 EERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--------ARGELHCVGATTLDEYRQYIEKDA 327 (857)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--------hcCCCeEEEcCCCHHHHHHhhhcH
Confidence 11222333332 24689999999976521 122222221 122334554544433211 0
Q ss_pred -ccCCcceEEccCCCHHHHHHHHHHHh
Q 000302 278 -DMNSQKFFLIEVLSYEEAWCLFEKIV 303 (1698)
Q Consensus 278 -~~~~~~~~~l~~L~~~e~~~Lf~~~~ 303 (1698)
....-..+.+...+.++...+++...
T Consensus 328 al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 328 ALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 11122356677778888888887655
No 153
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.17 E-value=0.0023 Score=78.78 Aligned_cols=157 Identities=16% Similarity=0.226 Sum_probs=91.1
Q ss_pred HHHHHHHhcC-CceEEEEEcCCCchHHHHHHHHHHHHhhcccCC-EEEEhHH---HHH------------HHHHHHccCc
Q 000302 166 QNIMEVLKDT-NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD-KVVFVER---AEK------------LRQRLKNVKR 228 (1698)
Q Consensus 166 ~~l~~~l~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~~~~~---~~~------------l~~~l~~~k~ 228 (1698)
....++...+ ...-+.|||+.|+|||+||+.+++..... +.+ .++|+.. ... ++++.. .+.
T Consensus 118 ~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~-~~~ 195 (440)
T PRK14088 118 HAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYR-KKV 195 (440)
T ss_pred HHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHH-hcC
Confidence 3444444322 23468999999999999999999987643 233 4556511 111 122221 134
Q ss_pred EEEEEcCccccc---cc-ccccCcccccccccCCCCCCeEEEEEeC-chhhh----hc---ccCCcceEEccCCCHHHHH
Q 000302 229 VLVILDNIWKLL---NL-DAVGIPFGDVKKERNDDRSRCTVLLTSR-NRDVL----CN---DMNSQKFFLIEVLSYEEAW 296 (1698)
Q Consensus 229 ~LlvlDdv~~~~---~~-~~~~~~~~~~~~~~~~~~~g~kilvTtR-~~~v~----~~---~~~~~~~~~l~~L~~~e~~ 296 (1698)
-+||+||+.... .+ +.+...+..+ ...|..||+||. .+.-. .. .+...-.+.+++.+.++-.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l------~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNEL------HDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHH------HHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 489999997541 11 1222222110 123457888874 32211 10 2334558899999999999
Q ss_pred HHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000302 297 CLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 331 (1698)
Q Consensus 297 ~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 331 (1698)
.++++++..... .--+++...|++.+.|.--.+.
T Consensus 270 ~IL~~~~~~~~~-~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 270 KIARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHhccccCHHHHH
Confidence 999998853211 1125678888888887654433
No 154
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.15 E-value=0.0011 Score=67.34 Aligned_cols=55 Identities=25% Similarity=0.327 Sum_probs=37.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-----------HH---HHHHHHHHHccC-cEEEEEcCcccc
Q 000302 180 IGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV-----------ER---AEKLRQRLKNVK-RVLVILDNIWKL 239 (1698)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~-----------~~---~~~l~~~l~~~k-~~LlvlDdv~~~ 239 (1698)
|-|+|+.|+||||+|+.+++..... ++.+ +. ...+.+..++.. +.+|++||++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~-----~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP-----FIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKL 70 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE-----EEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGT
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc-----cccccccccccccccccccccccccccccccccceeeeeccchhc
Confidence 5799999999999999999987421 2222 12 223333333334 799999999765
No 155
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.15 E-value=0.0019 Score=77.02 Aligned_cols=82 Identities=23% Similarity=0.259 Sum_probs=59.5
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh----------------------
Q 000302 156 EQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV---------------------- 213 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~---------------------- 213 (1698)
...++.+...+.+...|... +.|.++|++|+|||++|+.+++.......|+.+.|+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy 252 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGF 252 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCe
Confidence 34667788899999888754 467789999999999999999987655567777676
Q ss_pred ----HHHHHHHHHHHc--cCcEEEEEcCcccc
Q 000302 214 ----ERAEKLRQRLKN--VKRVLVILDNIWKL 239 (1698)
Q Consensus 214 ----~~~~~l~~~l~~--~k~~LlvlDdv~~~ 239 (1698)
+..-++.++.++ ++++.+|+|++...
T Consensus 253 ~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 253 RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred EecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 011122222222 47899999999766
No 156
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.14 E-value=0.0035 Score=78.12 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcC--CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHH---HH------------HHHHHHHcc
Q 000302 164 IFQNIMEVLKDT--NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVER---AE------------KLRQRLKNV 226 (1698)
Q Consensus 164 ~~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~---~~------------~l~~~l~~~ 226 (1698)
.......+...+ ...-+.|+|+.|+|||+||+.+++.......--.++++.. .. .+++.++
T Consensus 133 a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-- 210 (450)
T PRK00149 133 AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-- 210 (450)
T ss_pred HHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--
Confidence 444444444332 2356899999999999999999998865421234455511 11 2222222
Q ss_pred CcEEEEEcCcccccc---c-ccccCcccccccccCCCCCCeEEEEEeCchh--h-------hhcccCCcceEEccCCCHH
Q 000302 227 KRVLVILDNIWKLLN---L-DAVGIPFGDVKKERNDDRSRCTVLLTSRNRD--V-------LCNDMNSQKFFLIEVLSYE 293 (1698)
Q Consensus 227 k~~LlvlDdv~~~~~---~-~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~--v-------~~~~~~~~~~~~l~~L~~~ 293 (1698)
+.-+|||||+..... + +.+...+..+ ...|..||+||.... + .. .+.....+.+++.+.+
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l------~~~~~~iiits~~~p~~l~~l~~~l~S-Rl~~gl~v~i~~pd~~ 283 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNAL------HEAGKQIVLTSDRPPKELPGLEERLRS-RFEWGLTVDIEPPDLE 283 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHH------HHCCCcEEEECCCCHHHHHHHHHHHHh-HhcCCeeEEecCCCHH
Confidence 234899999965411 1 2222211110 123455777775431 1 11 3444568999999999
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000302 294 EAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 331 (1698)
Q Consensus 294 e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 331 (1698)
+-..++++++.... ..--+++...|++.++|-.-.+.
T Consensus 284 ~r~~il~~~~~~~~-~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 284 TRIAILKKKAEEEG-IDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHcCcCCCHHHHH
Confidence 99999999885321 11225678889999988776443
No 157
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.13 E-value=0.0027 Score=76.94 Aligned_cols=125 Identities=23% Similarity=0.330 Sum_probs=85.0
Q ss_pred chHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh----------HHHHHHHHHHH--ccC
Q 000302 160 SRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV----------ERAEKLRQRLK--NVK 227 (1698)
Q Consensus 160 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~----------~~~~~l~~~l~--~~k 227 (1698)
.|...+.++++.+..... ++.|+|+=++||||+++.+....... .+++ ...+.++.... ..+
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~ 94 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLRAYIELKERE 94 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHHHHHHhhccC
Confidence 444556666666554433 99999999999999997777665432 3333 11222222222 125
Q ss_pred cEEEEEcCcccccccccccCcccccccccCCCCCCeEEEEEeCchhhhh-----cccCCcceEEccCCCHHHHHHH
Q 000302 228 RVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC-----NDMNSQKFFLIEVLSYEEAWCL 298 (1698)
Q Consensus 228 ~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~-----~~~~~~~~~~l~~L~~~e~~~L 298 (1698)
+..|+||.|....+|+.....+.+ .++. +|++|+-+..... .-.|....+.+-||+-.|...+
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d-------~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYD-------RGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHc-------cccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 689999999999999998777776 4444 8888887754332 2345567899999999987654
No 158
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.13 E-value=0.00067 Score=72.73 Aligned_cols=101 Identities=21% Similarity=0.334 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh---------------------------
Q 000302 161 RMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV--------------------------- 213 (1698)
Q Consensus 161 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~--------------------------- 213 (1698)
+...-...+++|. ...++.+.|++|.|||.||.+.+-+.-.++.|+.++++
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 4445556666766 45699999999999999999999877666889999987
Q ss_pred --HHH------HHHHHHHHc------------c---CcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEE
Q 000302 214 --ERA------EKLRQRLKN------------V---KRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLT 268 (1698)
Q Consensus 214 --~~~------~~l~~~l~~------------~---k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvT 268 (1698)
+.. ..+...+.+ | .+..||+|++.+. .++..+... .+.|||||++
T Consensus 83 ~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR----------~g~~skii~~ 152 (205)
T PF02562_consen 83 IYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR----------IGEGSKIIIT 152 (205)
T ss_dssp HHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT----------B-TT-EEEEE
T ss_pred HHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc----------cCCCcEEEEe
Confidence 000 011111211 2 4679999999887 466666443 5679999999
Q ss_pred eCchh
Q 000302 269 SRNRD 273 (1698)
Q Consensus 269 tR~~~ 273 (1698)
--..+
T Consensus 153 GD~~Q 157 (205)
T PF02562_consen 153 GDPSQ 157 (205)
T ss_dssp E----
T ss_pred cCcee
Confidence 65443
No 159
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0083 Score=67.63 Aligned_cols=174 Identities=21% Similarity=0.206 Sum_probs=107.0
Q ss_pred CcccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-------
Q 000302 154 AYEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV------- 213 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~------- 213 (1698)
.+..+-|-++.+++|.+.+.- ...+=|-+||++|.|||-||++|+++.... |-.++=-
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--FIrvvgSElVqKYi 226 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--FIRVVGSELVQKYI 226 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--EEEeccHHHHHHHh
Confidence 455677899999999988761 234668899999999999999999987654 5444422
Q ss_pred -HH---HHHHHHHHHccCcEEEEEcCccccc------------c----cccccCcccccccccCCCCCCeEEEEEeCchh
Q 000302 214 -ER---AEKLRQRLKNVKRVLVILDNIWKLL------------N----LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD 273 (1698)
Q Consensus 214 -~~---~~~l~~~l~~~k~~LlvlDdv~~~~------------~----~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~ 273 (1698)
+. ...+.+..++.....|.+|.++... + +-++...+.. .. ....-|||..|-..+
T Consensus 227 GEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG----FD-~~~nvKVI~ATNR~D 301 (406)
T COG1222 227 GEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG----FD-PRGNVKVIMATNRPD 301 (406)
T ss_pred ccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC----CC-CCCCeEEEEecCCcc
Confidence 12 2334444445688999999986541 0 0111111110 00 245678998886665
Q ss_pred hhhc---ccCC-cceEEccCCCHHHHHHHHHHHhCC--CCCCCchHHHHHHHHHHhCCCh----HHHHHHHHHHh
Q 000302 274 VLCN---DMNS-QKFFLIEVLSYEEAWCLFEKIVGD--SAKASDFRVIADEIVRRCGGLP----VAIKTIANALK 338 (1698)
Q Consensus 274 v~~~---~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~~~~~~i~~~c~GlP----lai~~~~~~l~ 338 (1698)
+... .-|. ...+++..-+.+.-.+.|+-++.. -..+-+++ .+++.|.|.- -||.+=|++++
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKAICTEAGMFA 372 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHHHHHHHhHHH
Confidence 5442 1222 457777766666667788877742 22333443 4677777765 45666677753
No 160
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0091 Score=69.39 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHh-----------------hcccCCEEEE------------
Q 000302 163 KIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVI-----------------EDKLFDKVVF------------ 212 (1698)
Q Consensus 163 ~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~-----------------~~~~F~~~~~------------ 212 (1698)
...+.+...+..+.+ ..+-++|+.|+||+++|..++...- ...|-|..+.
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~ 90 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLR 90 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccccc
Confidence 456677777776554 5799999999999999999886442 2235555433
Q ss_pred ----hHHHHHHHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeCc-hhhhhcccCC
Q 000302 213 ----VERAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN-RDVLCNDMNS 281 (1698)
Q Consensus 213 ----~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~-~~v~~~~~~~ 281 (1698)
|+.+..+.+.+. .+++-++|+|+++... .-+.+.+.+-+ -..++.+|++|.+ ..+.......
T Consensus 91 ~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 91 TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-------PSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred ccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-------CCCCCeEEEEECChhhCchHHHhh
Confidence 223333333332 2567799999998763 33444444433 3446666666654 4443323344
Q ss_pred cceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 282 QKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 282 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
...+.+.+++.+++.+.+.+. |. . +..+..++..++|.|+.+..+
T Consensus 164 Cq~i~~~~~~~~~~~~~L~~~-~~--~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 164 CQRLEFKLPPAHEALAWLLAQ-GV--S----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred heEeeCCCcCHHHHHHHHHHc-CC--C----hHHHHHHHHHcCCCHHHHHHH
Confidence 668899999999998887653 21 1 223667899999999866543
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.12 E-value=0.0026 Score=85.30 Aligned_cols=142 Identities=14% Similarity=0.217 Sum_probs=87.0
Q ss_pred CcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcc----cCCEEEEh----------------
Q 000302 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFV---------------- 213 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~~~---------------- 213 (1698)
..+.++||+.++.++++.|......-+.++|++|+|||++|..++.+..... ..+..+|.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~ 250 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEF 250 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhH
Confidence 3456899999999999999866656677999999999999999998764321 11333333
Q ss_pred -HHHHHHHHHHHc-cCcEEEEEcCcccccc---------cccccCcccccccccCCCCCCeEEEEEeCchhhhh----c-
Q 000302 214 -ERAEKLRQRLKN-VKRVLVILDNIWKLLN---------LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC----N- 277 (1698)
Q Consensus 214 -~~~~~l~~~l~~-~k~~LlvlDdv~~~~~---------~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~----~- 277 (1698)
.+...+.+.+.+ +++.+|++|++..... ...+..+.- ....-++|-+|...+.-. .
T Consensus 251 e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--------~~g~i~~IgaTt~~e~r~~~~~d~ 322 (852)
T TIGR03346 251 EERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--------ARGELHCIGATTLDEYRKYIEKDA 322 (852)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--------hcCceEEEEeCcHHHHHHHhhcCH
Confidence 122233333322 4689999999975521 111222211 112234454444333211 0
Q ss_pred -ccCCcceEEccCCCHHHHHHHHHHHh
Q 000302 278 -DMNSQKFFLIEVLSYEEAWCLFEKIV 303 (1698)
Q Consensus 278 -~~~~~~~~~l~~L~~~e~~~Lf~~~~ 303 (1698)
....-..+.+...+.++...+++...
T Consensus 323 al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 323 ALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 11223467899999999999887765
No 162
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.10 E-value=0.0029 Score=78.67 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=87.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHH---HHHHHHHHHcc----------CcEEEEEcCccccc---c
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVER---AEKLRQRLKNV----------KRVLVILDNIWKLL---N 241 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~---~~~l~~~l~~~----------k~~LlvlDdv~~~~---~ 241 (1698)
.-+.|||..|+|||.|++.+++.......--.++++.. ...+...+..+ +-=+|||||+.... .
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES 394 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence 45899999999999999999998764321234455521 11222222111 12389999997652 2
Q ss_pred cc-cccCcccccccccCCCCCCeEEEEEeCch---------hhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCc
Q 000302 242 LD-AVGIPFGDVKKERNDDRSRCTVLLTSRNR---------DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASD 311 (1698)
Q Consensus 242 ~~-~~~~~~~~~~~~~~~~~~g~kilvTtR~~---------~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~ 311 (1698)
|+ .+...+.. + ...|..|||||+.. .+.. .+...-++.++..+.+.-.+++++++....- .-
T Consensus 395 tqeeLF~l~N~----l--~e~gk~IIITSd~~P~eL~~l~~rL~S-Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l-~l 466 (617)
T PRK14086 395 TQEEFFHTFNT----L--HNANKQIVLSSDRPPKQLVTLEDRLRN-RFEWGLITDVQPPELETRIAILRKKAVQEQL-NA 466 (617)
T ss_pred HHHHHHHHHHH----H--HhcCCCEEEecCCChHhhhhccHHHHh-hhhcCceEEcCCCCHHHHHHHHHHHHHhcCC-CC
Confidence 22 22222211 0 22356688888753 1222 3555678999999999999999998843211 11
Q ss_pred hHHHHHHHHHHhCCChHHH
Q 000302 312 FRVIADEIVRRCGGLPVAI 330 (1698)
Q Consensus 312 ~~~~~~~i~~~c~GlPlai 330 (1698)
-++++.-|++.+.+..-.+
T Consensus 467 ~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 467 PPEVLEFIASRISRNIREL 485 (617)
T ss_pred CHHHHHHHHHhccCCHHHH
Confidence 2567778888877654433
No 163
>PHA00729 NTP-binding motif containing protein
Probab=97.09 E-value=0.0021 Score=69.62 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=66.0
Q ss_pred HHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhc-----------ccCCEEEEh---HHHHHHHHHHHccCc-EE
Q 000302 166 QNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIED-----------KLFDKVVFV---ERAEKLRQRLKNVKR-VL 230 (1698)
Q Consensus 166 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----------~~F~~~~~~---~~~~~l~~~l~~~k~-~L 230 (1698)
..+++.+...+...|.|+|.+|+||||||..+++..-.. .....+.++ +....++.......+ =+
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dl 85 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPL 85 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCE
Confidence 345566666667789999999999999999999875310 011122333 333445444432233 38
Q ss_pred EEEcCc--cccc-cccc--ccCcccccccccCCCCCCeEEEEEeCchhhhhcccCCcceEEccCCCHHHHHHHHHHHh
Q 000302 231 VILDNI--WKLL-NLDA--VGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIV 303 (1698)
Q Consensus 231 lvlDdv--~~~~-~~~~--~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 303 (1698)
||+||+ |-.. .|.. ++..+ .+..........+.+.++++++..+.++.+.
T Consensus 86 LIIDd~G~~~~~~~wh~~~~~~yf-----------------------~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg 140 (226)
T PHA00729 86 IIFDDAGIWLSKYVWYEDYMKTFY-----------------------KIYALIRTRVSAVIFTTPSPEDLAFYLREKG 140 (226)
T ss_pred EEEeCCchhhcccchhhhccchHH-----------------------HHHHHHHhhCcEEEEecCCHHHHHHHHHhCC
Confidence 999994 3332 2331 11100 0111011234567788888888888888854
No 164
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.023 Score=67.71 Aligned_cols=172 Identities=22% Similarity=0.278 Sum_probs=100.5
Q ss_pred cccchHHHHHHHHHHHh----cCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-------------------
Q 000302 157 QFDSRMKIFQNIMEVLK----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV------------------- 213 (1698)
Q Consensus 157 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~------------------- 213 (1698)
.+.+|+.+++++...|. .....-+.|+|..|+|||+.++.|.+..+....=..++++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 38899999999998887 2333449999999999999999999988754221114444
Q ss_pred -----------HHHHHHHHHHHc-cCcEEEEEcCcccccccc--cccCcccccccccCCCCCCeEEEE--EeCchhhhhc
Q 000302 214 -----------ERAEKLRQRLKN-VKRVLVILDNIWKLLNLD--AVGIPFGDVKKERNDDRSRCTVLL--TSRNRDVLCN 277 (1698)
Q Consensus 214 -----------~~~~~l~~~l~~-~k~~LlvlDdv~~~~~~~--~~~~~~~~~~~~~~~~~~g~kilv--TtR~~~v~~~ 277 (1698)
+....+.+.+.+ ++.+.+|||+++....-. -+..-+.. .....++|++ .+-+......
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~------~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRA------PGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhh------ccccceeEEEEEEeccHHHHHH
Confidence 122344444443 688999999998763321 11111111 0222454433 3333222211
Q ss_pred -------ccCCcceEEccCCCHHHHHHHHHHHhC----CCCCCCchHH-HHHHHHHHhCCChHHHHHHHH
Q 000302 278 -------DMNSQKFFLIEVLSYEEAWCLFEKIVG----DSAKASDFRV-IADEIVRRCGGLPVAIKTIAN 335 (1698)
Q Consensus 278 -------~~~~~~~~~l~~L~~~e~~~Lf~~~~~----~~~~~~~~~~-~~~~i~~~c~GlPlai~~~~~ 335 (1698)
..+ ...+..+|=+.+|-...+..++. +...+++.-+ +|...++..|-.=.||..+-+
T Consensus 172 ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 172 LDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred hhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 122 33477889999999999999882 2333344434 344444444444455554443
No 165
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.036 Score=65.74 Aligned_cols=122 Identities=19% Similarity=0.254 Sum_probs=77.7
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHHHHH---HHHHHHcc------C--cE-EEEEcCcccccc--
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVERAEK---LRQRLKNV------K--RV-LVILDNIWKLLN-- 241 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~~~~---l~~~l~~~------k--~~-LlvlDdv~~~~~-- 241 (1698)
....+.|||..|.|||.|++++++.......=..++++..... ....++.+ + .+ ++++||++-...
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~ 191 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKE 191 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCCh
Confidence 3678999999999999999999999876533235666632221 11111110 1 23 899999976422
Q ss_pred -cc-cccCcccccccccCCCCCCeEEEEEeCch---------hhhhcccCCcceEEccCCCHHHHHHHHHHHhC
Q 000302 242 -LD-AVGIPFGDVKKERNDDRSRCTVLLTSRNR---------DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVG 304 (1698)
Q Consensus 242 -~~-~~~~~~~~~~~~~~~~~~g~kilvTtR~~---------~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 304 (1698)
|+ .+...|..+ ...|-.||+|++.. +... .+...-++.+.+.+.+.-...+.+++.
T Consensus 192 ~~qeefFh~FN~l------~~~~kqIvltsdr~P~~l~~~~~rL~S-R~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 192 RTQEEFFHTFNAL------LENGKQIVLTSDRPPKELNGLEDRLRS-RLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hHHHHHHHHHHHH------HhcCCEEEEEcCCCchhhccccHHHHH-HHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 22 222222221 22344899998543 2222 355567899999999999999999873
No 166
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.01 E-value=0.00033 Score=89.91 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=82.0
Q ss_pred cCCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEccCccCC---Ccccccccccc
Q 000302 501 LECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVG---DVAIVGQLKKL 577 (1698)
Q Consensus 501 ~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~---~~~~i~~L~~L 577 (1698)
.-+|.|++|.+.+-...... ....+.++++|+.||+|+++++.+ ..++.|++|++|.+.+=.+. ++..+.+|++|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 35799999999875211111 234567899999999999999988 67999999999999887665 36789999999
Q ss_pred ceeecCCCCCCccchH-------hhccccccEecccCcc
Q 000302 578 EILSFRNSDIQQLPRE-------IGQLVQLRLLDLRNCR 609 (1698)
Q Consensus 578 ~~L~Ls~~~i~~LP~~-------i~~L~~L~~L~L~~~~ 609 (1698)
++||+|...-..-|.- -..|++||.||.|++.
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 9999999754443321 1348889999988874
No 167
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.00 E-value=0.0007 Score=73.63 Aligned_cols=48 Identities=23% Similarity=0.368 Sum_probs=34.8
Q ss_pred cccchHHHHHHHHHHHh---cCCceEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 157 QFDSRMKIFQNIMEVLK---DTNVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 157 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
.|+||+++++++...+. ....+.+.|+|++|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999993 4456899999999999999999999988765
No 168
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.00 E-value=0.0046 Score=65.82 Aligned_cols=164 Identities=15% Similarity=0.211 Sum_probs=99.2
Q ss_pred cccccchHHHHH---HHHHHHhcC------CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-----------H
Q 000302 155 YEQFDSRMKIFQ---NIMEVLKDT------NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV-----------E 214 (1698)
Q Consensus 155 ~~~~~gr~~~~~---~l~~~l~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~-----------~ 214 (1698)
.++++|.++.+. -|++.|.++ ..+-|-.+|++|.|||.+|+++++..++- |-.+--. .
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~l~vkat~liGehVGdgar 197 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--LLLVKATELIGEHVGDGAR 197 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--eEEechHHHHHHHhhhHHH
Confidence 356788887654 466777654 35788999999999999999999987643 2111111 3
Q ss_pred HHHHHHHHHHccCcEEEEEcCccccc----------ccccccCc-ccccccccCCCCCCeEEEEEeCchhhhhcccCC--
Q 000302 215 RAEKLRQRLKNVKRVLVILDNIWKLL----------NLDAVGIP-FGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNS-- 281 (1698)
Q Consensus 215 ~~~~l~~~l~~~k~~LlvlDdv~~~~----------~~~~~~~~-~~~~~~~~~~~~~g~kilvTtR~~~v~~~~~~~-- 281 (1698)
+++++.++..+--.|.+.+|.++... +..++..+ +.++.. ...+.|-..|-.|-+.+.......+
T Consensus 198 ~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg--i~eneGVvtIaaTN~p~~LD~aiRsRF 275 (368)
T COG1223 198 RIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG--IKENEGVVTIAATNRPELLDPAIRSRF 275 (368)
T ss_pred HHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccC--cccCCceEEEeecCChhhcCHHHHhhh
Confidence 45666777776789999999986641 11111111 111110 1134566666677666555432222
Q ss_pred cceEEccCCCHHHHHHHHHHHhCC--CCCCCchHHHHHHHHHHhCCC
Q 000302 282 QKFFLIEVLSYEEAWCLFEKIVGD--SAKASDFRVIADEIVRRCGGL 326 (1698)
Q Consensus 282 ~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~~~~~~i~~~c~Gl 326 (1698)
...++..--+++|-.+++..++.. -..... .+.++++.+|+
T Consensus 276 EeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 276 EEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred hheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 345666677888888888888842 122222 34566666664
No 169
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.99 E-value=0.0016 Score=76.26 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=32.5
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
.-..++|+|++|+|||||++.+++....+ +|+..+|+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~V 203 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIV 203 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEE
Confidence 34689999999999999999999988654 89988887
No 170
>CHL00176 ftsH cell division protein; Validated
Probab=96.98 E-value=0.0086 Score=76.45 Aligned_cols=163 Identities=19% Similarity=0.221 Sum_probs=93.4
Q ss_pred cccccchHHHHHHHHHHH---hcC---------CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEE---EEh------
Q 000302 155 YEQFDSRMKIFQNIMEVL---KDT---------NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKV---VFV------ 213 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~---~~~------ 213 (1698)
..++.|.++.++++.+.+ .+. ..+-|.++|++|+|||++|+.++...... |-.+ -|.
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p--~i~is~s~f~~~~~g~ 259 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP--FFSISGSEFVEMFVGV 259 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--eeeccHHHHHHHhhhh
Confidence 455778776666655443 322 13468999999999999999999875322 2111 011
Q ss_pred --HHHHHHHHHHHccCcEEEEEcCccccc------------c----cccccCcccccccccCCCCCCeEEEEEeCchhhh
Q 000302 214 --ERAEKLRQRLKNVKRVLVILDNIWKLL------------N----LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL 275 (1698)
Q Consensus 214 --~~~~~l~~~l~~~k~~LlvlDdv~~~~------------~----~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~ 275 (1698)
.....+.+...+..+++|++||++... . +..+...+.. . ....+-.||.||...+..
T Consensus 260 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg----~-~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 260 GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG----F-KGNKGVIVIAATNRVDIL 334 (638)
T ss_pred hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc----c-cCCCCeeEEEecCchHhh
Confidence 112233334444678999999996431 1 1111111111 0 023455677777654433
Q ss_pred hccc---C-CcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCC
Q 000302 276 CNDM---N-SQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGL 326 (1698)
Q Consensus 276 ~~~~---~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 326 (1698)
...+ + -...+.++..+.++-.++++.++......+ ......+++.+.|.
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 2111 1 235788888999999999998885422111 23356788888773
No 171
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.96 E-value=0.0039 Score=76.43 Aligned_cols=139 Identities=14% Similarity=0.169 Sum_probs=81.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHH---HHHHHHHHHc----------cCcEEEEEcCccccccc--
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVER---AEKLRQRLKN----------VKRVLVILDNIWKLLNL-- 242 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~---~~~l~~~l~~----------~k~~LlvlDdv~~~~~~-- 242 (1698)
.-+.|+|+.|+|||+|++.+++..... ...++++.. ...+...+.. ...-++++||+......
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChh
Confidence 568899999999999999999987643 233455511 1111111110 13348899998664221
Q ss_pred --ccccCcccccccccCCCCCCeEEEEEeCch-h--------hhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCc
Q 000302 243 --DAVGIPFGDVKKERNDDRSRCTVLLTSRNR-D--------VLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASD 311 (1698)
Q Consensus 243 --~~~~~~~~~~~~~~~~~~~g~kilvTtR~~-~--------v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~ 311 (1698)
+.+...+..+ ...|..||+||... . +.. .+...-.+.+.+++.++-..++++++..... .-
T Consensus 220 ~qeelf~l~N~l------~~~~k~IIlts~~~p~~l~~l~~rL~S-R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~-~l 291 (445)
T PRK12422 220 TQEEFFHTFNSL------HTEGKLIVISSTCAPQDLKAMEERLIS-RFEWGIAIPLHPLTKEGLRSFLERKAEALSI-RI 291 (445)
T ss_pred hHHHHHHHHHHH------HHCCCcEEEecCCCHHHHhhhHHHHHh-hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC-CC
Confidence 2222222110 11355788887542 1 111 2444568899999999999999998843211 11
Q ss_pred hHHHHHHHHHHhCCC
Q 000302 312 FRVIADEIVRRCGGL 326 (1698)
Q Consensus 312 ~~~~~~~i~~~c~Gl 326 (1698)
-+++..-|++.+.|.
T Consensus 292 ~~evl~~la~~~~~d 306 (445)
T PRK12422 292 EETALDFLIEALSSN 306 (445)
T ss_pred CHHHHHHHHHhcCCC
Confidence 245666677776643
No 172
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.93 E-value=0.00034 Score=77.90 Aligned_cols=82 Identities=21% Similarity=0.267 Sum_probs=42.4
Q ss_pred ccCCceeEEEecCCCccc-----CCccccCCCcccEEEccCccCCC-----cc-------ccccccccceeecCCCCCC-
Q 000302 527 EGMNELRVVHFTRTCFLS-----LPSSLVCLISLRTLSLEGCQVGD-----VA-------IVGQLKKLEILSFRNSDIQ- 588 (1698)
Q Consensus 527 ~~l~~LrvL~L~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~l~~-----~~-------~i~~L~~L~~L~Ls~~~i~- 588 (1698)
..+..+..++|++|.+.. +-..+.+.+.||.-++++-.... |+ .+-...+|++||||+|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 445667777777776531 33445555666666666543221 11 2223336666666666432
Q ss_pred ccc----hHhhccccccEecccCc
Q 000302 589 QLP----REIGQLVQLRLLDLRNC 608 (1698)
Q Consensus 589 ~LP----~~i~~L~~L~~L~L~~~ 608 (1698)
.-+ .-|...+.|++|.|.+|
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcC
Confidence 112 22344555666666665
No 173
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.93 E-value=0.025 Score=69.92 Aligned_cols=169 Identities=15% Similarity=0.139 Sum_probs=90.8
Q ss_pred cccccchHHHHHHHHHHHh-------c---CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEE-------EEh-HH-
Q 000302 155 YEQFDSRMKIFQNIMEVLK-------D---TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKV-------VFV-ER- 215 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~-------~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-------~~~-~~- 215 (1698)
..++.|.+..++.+.+... . ...+-|-++|++|+|||.+|+.+++..... |-.+ -|+ +.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~~~l~~~~l~~~~vGese 304 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--LLRLDVGKLFGGIVGESE 304 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--EEEEEhHHhcccccChHH
Confidence 4456787766666654321 1 234568899999999999999999986432 1111 122 12
Q ss_pred --HHHHHHHHHccCcEEEEEcCcccccc----c------ccccCcccccccccCCCCCCeEEEEEeCchhhhhccc----
Q 000302 216 --AEKLRQRLKNVKRVLVILDNIWKLLN----L------DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDM---- 279 (1698)
Q Consensus 216 --~~~l~~~l~~~k~~LlvlDdv~~~~~----~------~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~~~---- 279 (1698)
...+.+..+...+++|++|+++.... . ..+...+- ........+--||.||...+-....+
T Consensus 305 ~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL---~~l~~~~~~V~vIaTTN~~~~Ld~allR~G 381 (489)
T CHL00195 305 SRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFI---TWLSEKKSPVFVVATANNIDLLPLEILRKG 381 (489)
T ss_pred HHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHH---HHHhcCCCceEEEEecCChhhCCHHHhCCC
Confidence 22333333345889999999975411 0 00000000 00000223444566765543221111
Q ss_pred CCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChH
Q 000302 280 NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPV 328 (1698)
Q Consensus 280 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 328 (1698)
.-...+.++.-+.++-.++|+.+.........-..-...+++.+.|.-=
T Consensus 382 RFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSG 430 (489)
T CHL00195 382 RFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSG 430 (489)
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCH
Confidence 1245788888899999999988874321110001113457777766553
No 174
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.022 Score=66.32 Aligned_cols=155 Identities=13% Similarity=0.132 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhcCC-ceEEEEEcCCCchHHHHHHHHHHHHhh--------------------cccCCEEEEh--------
Q 000302 163 KIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIE--------------------DKLFDKVVFV-------- 213 (1698)
Q Consensus 163 ~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~F~~~~~~-------- 213 (1698)
...+.+.+.+..+. .+.+-++|+.|+||+++|..++...-- ..|.|.....
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~ 88 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIG 88 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCC
Confidence 34566777777655 468889999999999999999875532 1244443331
Q ss_pred -HHHHHHHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeCch-hhhhcccCCcceE
Q 000302 214 -ERAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCNDMNSQKFF 285 (1698)
Q Consensus 214 -~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~-~v~~~~~~~~~~~ 285 (1698)
+.+..+.+.+. ++++-.+|+|+++... ..+.+.+.+-+ ...++.+|++|.+. .+..........+
T Consensus 89 id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-------Pp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 89 VDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-------PRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-------CCCCeEEEEEECChHhCchHHHhhceEE
Confidence 33344444443 2566788899998873 44555554544 44566766666554 4443223446789
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHH
Q 000302 286 LIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 330 (1698)
Q Consensus 286 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 330 (1698)
.+.++++++..+.+.+..+.. ...+...++.++|-|..+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 999999999998888765321 112556788999999643
No 175
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.90 E-value=0.0017 Score=65.83 Aligned_cols=86 Identities=27% Similarity=0.342 Sum_probs=52.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcc---cCCEEEEh------------------------------HHHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDK---LFDKVVFV------------------------------ERAEKLRQRL 223 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~~~------------------------------~~~~~l~~~l 223 (1698)
.+++.|+|.+|+|||++++++++...... .-..++|+ ...+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46899999999999999999999765321 12344565 1224455555
Q ss_pred HccCcEEEEEcCcccc-c--ccccccCcccccccccCCCCCCeEEEEEeCc
Q 000302 224 KNVKRVLVILDNIWKL-L--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN 271 (1698)
Q Consensus 224 ~~~k~~LlvlDdv~~~-~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~ 271 (1698)
.+.+..+||+||+..- . .++.+.. +. ...+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~-l~--------~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRS-LL--------NESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHH-HT--------CSCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHH-HH--------hCCCCeEEEEECh
Confidence 5445679999999875 2 1222211 11 3567788887765
No 176
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.86 E-value=0.00021 Score=79.55 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=82.4
Q ss_pred CCeEEEEEecccCC--CCccChhhhccCCceeEEEecCCCc----ccCCcc-------ccCCCcccEEEccCccCCC--c
Q 000302 504 PKLSLFLLFAKYDS--SLKIPDLFFEGMNELRVVHFTRTCF----LSLPSS-------LVCLISLRTLSLEGCQVGD--V 568 (1698)
Q Consensus 504 ~~Lr~L~l~~~~~~--~~~i~~~~f~~l~~LrvL~L~~~~i----~~lp~~-------i~~L~~Lr~L~L~~~~l~~--~ 568 (1698)
..+..+.+++|+.. ..+.....+.+-+.||.-++++... ..+|+. +-...+|++|+||.|-+.. +
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 34445555555211 1122333455666777777776432 234433 3345578888888887662 3
Q ss_pred ----cccccccccceeecCCCCCCccchH--------------hhccccccEecccCcccccccCch----hhccCccCc
Q 000302 569 ----AIVGQLKKLEILSFRNSDIQQLPRE--------------IGQLVQLRLLDLRNCRRLQAIAPN----VISKLSRLE 626 (1698)
Q Consensus 569 ----~~i~~L~~L~~L~Ls~~~i~~LP~~--------------i~~L~~L~~L~L~~~~~l~~lp~~----~i~~L~~L~ 626 (1698)
.-|.....|++|.|.+|.+...-.+ ++.=.+||++...+| ++..-+.. .+...+.|+
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccc
Confidence 3345567788888888876533211 233345666666555 34433321 134445666
Q ss_pred eecccCcccccccccCCCccchhhhCCCCCCCEEEEEec
Q 000302 627 ELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIR 665 (1698)
Q Consensus 627 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 665 (1698)
++.+..|.+.. .........+..+++|+.|++.-|
T Consensus 189 evr~~qN~I~~----eG~~al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 189 EVRLSQNGIRP----EGVTALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred eEEEecccccC----chhHHHHHHHHhCCcceeeecccc
Confidence 66666555531 111233445566666666666544
No 177
>PTZ00202 tuzin; Provisional
Probab=96.85 E-value=0.012 Score=68.88 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=83.2
Q ss_pred CCCCcccccchHHHHHHHHHHHhc---CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh--------------
Q 000302 151 SYTAYEQFDSRMKIFQNIMEVLKD---TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV-------------- 213 (1698)
Q Consensus 151 ~~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~-------------- 213 (1698)
.|.+...|+||+.+..++...|.+ ...+++.|.|++|+|||||++.+..... +- ..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~-qL~vNprg~eElLr~LL~ 331 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFVDVRGTEDTLRSVVK 331 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEECCCCHHHHHHHHHH
Confidence 455677899999999999999863 2346999999999999999999996543 11 2221
Q ss_pred -----------HHHHHHHHHHH----c-cCcEEEEEcCccccccccccc---CcccccccccCCCCCCeEEEEEeCchhh
Q 000302 214 -----------ERAEKLRQRLK----N-VKRVLVILDNIWKLLNLDAVG---IPFGDVKKERNDDRSRCTVLLTSRNRDV 274 (1698)
Q Consensus 214 -----------~~~~~l~~~l~----~-~k~~LlvlDdv~~~~~~~~~~---~~~~~~~~~~~~~~~g~kilvTtR~~~v 274 (1698)
+....|++.+. . +++.+||+-= .+..++..+. ..+.. ...-|.|++----+..
T Consensus 332 ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~-------drr~ch~v~evplesl 403 (550)
T PTZ00202 332 ALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALAC-------DRRLCHVVIEVPLESL 403 (550)
T ss_pred HcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHc-------cchhheeeeeehHhhc
Confidence 12233333332 2 5666666542 2221111111 11221 3456677765433322
Q ss_pred h--hcccCCcceEEccCCCHHHHHHHHHHHh
Q 000302 275 L--CNDMNSQKFFLIEVLSYEEAWCLFEKIV 303 (1698)
Q Consensus 275 ~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 303 (1698)
. ......-..|.+++++.++|...-....
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1 1123345688899999999887655543
No 178
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.83 E-value=0.0051 Score=77.74 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=41.9
Q ss_pred CCCcccccchHHHHHHHHHHHhcC-----CceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 152 YTAYEQFDSRMKIFQNIMEVLKDT-----NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~l~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
|....+++|.+..++++..++.+. ..+++.|+|+.|+||||+++.++....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 455677899999999999998742 346799999999999999999997543
No 179
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.027 Score=66.21 Aligned_cols=141 Identities=19% Similarity=0.323 Sum_probs=89.9
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-----------HHHHHHHHHHH---ccCcEEEEEcCcccccc
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV-----------ERAEKLRQRLK---NVKRVLVILDNIWKLLN 241 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~-----------~~~~~l~~~l~---~~k~~LlvlDdv~~~~~ 241 (1698)
....+.+.|++|+|||+||.+++... .|..+-.+ .....+.+... +..=-.||+||+....+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD 612 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD 612 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc
Confidence 34577899999999999999999863 47665555 12223333332 23556899999999999
Q ss_pred cccccCccccccc-c-----cCCCCCCeE--EEEEeCchhhhhcccCC----cceEEccCCCH-HHHHHHHHHHhCCCCC
Q 000302 242 LDAVGIPFGDVKK-E-----RNDDRSRCT--VLLTSRNRDVLCNDMNS----QKFFLIEVLSY-EEAWCLFEKIVGDSAK 308 (1698)
Q Consensus 242 ~~~~~~~~~~~~~-~-----~~~~~~g~k--ilvTtR~~~v~~~~~~~----~~~~~l~~L~~-~e~~~Lf~~~~~~~~~ 308 (1698)
|..++..|.+++- . -....+|-| |+-||....|.. .|+- ...+.++.++. ++..+.+...- ...
T Consensus 613 ~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n--~fs 689 (744)
T KOG0741|consen 613 YVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNLTTGEQLLEVLEELN--IFS 689 (744)
T ss_pred ccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCccCchHHHHHHHHHcc--CCC
Confidence 9999887765221 1 011223444 555666677776 4654 45788888887 66666666543 122
Q ss_pred CCchHHHHHHHHHHh
Q 000302 309 ASDFRVIADEIVRRC 323 (1698)
Q Consensus 309 ~~~~~~~~~~i~~~c 323 (1698)
+.+.+.++.+.+.+|
T Consensus 690 d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 690 DDEVRAIAEQLLSKK 704 (744)
T ss_pred cchhHHHHHHHhccc
Confidence 344455666666666
No 180
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.017 Score=68.53 Aligned_cols=139 Identities=12% Similarity=0.138 Sum_probs=90.5
Q ss_pred cccc-hHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhhc--------------------ccCCEEEEh-
Q 000302 157 QFDS-RMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIED--------------------KLFDKVVFV- 213 (1698)
Q Consensus 157 ~~~g-r~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~~~- 213 (1698)
.++| .+..++.+.+.+..+++ +.+-++|+.|+||||+|..+++..-.. .|.|.....
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 3456 77778888888876654 577999999999999999998765322 244554432
Q ss_pred -------HHHHHHHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeCch-hhhhccc
Q 000302 214 -------ERAEKLRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCNDM 279 (1698)
Q Consensus 214 -------~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~-~v~~~~~ 279 (1698)
+.+..+.+.+. .+++-.+|+|++.... ..+.+...+-+ ...++.+|++|.+. .+.....
T Consensus 86 ~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE-------Pp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 86 DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE-------PSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred ccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-------CCCCceEEEEeCChHhCcHHHH
Confidence 33344444443 2456679999987652 34445444444 34567777676554 3332123
Q ss_pred CCcceEEccCCCHHHHHHHHHHH
Q 000302 280 NSQKFFLIEVLSYEEAWCLFEKI 302 (1698)
Q Consensus 280 ~~~~~~~l~~L~~~e~~~Lf~~~ 302 (1698)
.....+.+.++++++..+.+++.
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHHc
Confidence 34678999999999987777653
No 181
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.75 E-value=0.058 Score=58.88 Aligned_cols=84 Identities=14% Similarity=0.228 Sum_probs=59.0
Q ss_pred CCCcccccchHHHHHHHHHHH----hcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-----HHHHHHHHH
Q 000302 152 YTAYEQFDSRMKIFQNIMEVL----KDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV-----ERAEKLRQR 222 (1698)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~l----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~-----~~~~~l~~~ 222 (1698)
+.....++|-+..++.+++-. ......-+-+||..|+|||++++++.+....+. =..+-| .....+.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~l~~~ 100 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPELLDL 100 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHHHHHH
Confidence 344567899888888776533 334456778899999999999999999887653 122222 223455556
Q ss_pred HH-ccCcEEEEEcCcc
Q 000302 223 LK-NVKRVLVILDNIW 237 (1698)
Q Consensus 223 l~-~~k~~LlvlDdv~ 237 (1698)
++ ...||+|.+||+.
T Consensus 101 l~~~~~kFIlf~DDLs 116 (249)
T PF05673_consen 101 LRDRPYKFILFCDDLS 116 (249)
T ss_pred HhcCCCCEEEEecCCC
Confidence 55 3589999999984
No 182
>PRK08118 topology modulation protein; Reviewed
Probab=96.67 E-value=0.0025 Score=67.18 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=29.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhc-ccCCEEEE
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIED-KLFDKVVF 212 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~ 212 (1698)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999987654 45787774
No 183
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.076 Score=61.77 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCC-ceEEEEEcCCCchHHHHHHHHHHHHhh-------------------cccCCEEEEh---------
Q 000302 163 KIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIE-------------------DKLFDKVVFV--------- 213 (1698)
Q Consensus 163 ~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~~~~--------- 213 (1698)
...+.+.+.+..+. .+.+-++|+.|+||+++|..++...-- ..|.|.....
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~ 89 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSIT 89 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCC
Confidence 34566777776554 468999999999999999999875421 2355544332
Q ss_pred -HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEeCc-hhhhhcccCCcceE
Q 000302 214 -ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRN-RDVLCNDMNSQKFF 285 (1698)
Q Consensus 214 -~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~-~~v~~~~~~~~~~~ 285 (1698)
+.+..+.+.+. ++++-.+|+|++... ...+.+.+.+-+ ...++.+|++|.+ ..+..........+
T Consensus 90 vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~fiL~t~~~~~lLpTI~SRCq~~ 162 (319)
T PRK06090 90 VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-------PAPNCLFLLVTHNQKRLLPTIVSRCQQW 162 (319)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-------CCCCeEEEEEECChhhChHHHHhcceeE
Confidence 33333434442 245668899999876 345555555544 3456666666555 44443234456789
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 286 LIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 286 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
.+.+++++++.+.+.+. |.. .+..+++.++|.|+.+..+
T Consensus 163 ~~~~~~~~~~~~~L~~~-~~~--------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 163 VVTPPSTAQAMQWLKGQ-GIT--------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eCCCCCHHHHHHHHHHc-CCc--------hHHHHHHHcCCCHHHHHHH
Confidence 99999999998888654 211 1356789999999876544
No 184
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.58 E-value=0.0066 Score=68.40 Aligned_cols=57 Identities=25% Similarity=0.427 Sum_probs=44.9
Q ss_pred cccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHH-HHhhcccCCEEEEh
Q 000302 157 QFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAM-QVIEDKLFDKVVFV 213 (1698)
Q Consensus 157 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~-~~~~~~~F~~~~~~ 213 (1698)
++-+|..+-.--+++|.++++..|.+.|.+|.|||-||-+++= +.-+++.|..++..
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVt 282 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVT 282 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEe
Confidence 4556777777778999999999999999999999998877753 44455667766654
No 185
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.54 E-value=0.045 Score=64.56 Aligned_cols=156 Identities=12% Similarity=0.110 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhcCC-ceEEEEEcCCCchHHHHHHHHHHHHhh--------------------cccCCEEEE---------
Q 000302 163 KIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIE--------------------DKLFDKVVF--------- 212 (1698)
Q Consensus 163 ~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~F~~~~~--------- 212 (1698)
..-+++.+.+..++ ...+-++|+.|+||+|+|..++...-- ..|.|....
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I 88 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSL 88 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccC
Confidence 34566777777554 468889999999999999998876522 234454333
Q ss_pred -hHHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEeCc-hhhhhcccCCcce
Q 000302 213 -VERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRN-RDVLCNDMNSQKF 284 (1698)
Q Consensus 213 -~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~-~~v~~~~~~~~~~ 284 (1698)
|+.+..+.+.+. ++++-.+|+|+++.. ...+.+.+.+-+ ...++.+|++|.+ ..+..........
T Consensus 89 ~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 89 GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-------PPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-------CCCCeEEEEEECChhhChHHHHhcccc
Confidence 133444444443 257779999999876 334555555544 3456666666655 4444322334567
Q ss_pred EEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHH
Q 000302 285 FLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIK 331 (1698)
Q Consensus 285 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 331 (1698)
+.+.+++++++.+.+.+..|. + .+.+..+++.++|.|..+.
T Consensus 162 ~~~~~~~~~~~~~~L~~~~~~---~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREVTM---S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccCCCCCHHHHHHHHHHccCC---C---HHHHHHHHHHcCCCHHHHH
Confidence 899999999998888665331 1 2336788999999996543
No 186
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.54 E-value=0.00058 Score=65.41 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=50.8
Q ss_pred CCccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEccCccCC-CccccccccccceeecCCCCCCccchH
Q 000302 518 SLKIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVG-DVAIVGQLKKLEILSFRNSDIQQLPRE 593 (1698)
Q Consensus 518 ~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~-~~~~i~~L~~L~~L~Ls~~~i~~LP~~ 593 (1698)
..++|..|-.+++.+..|+|++|.|..+|..+..++.||.|+++.|.+. .|..|..|.+|-+||..+|.+.++|-.
T Consensus 65 fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 65 FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 3345555555666677777777777777777777777777777777765 356666677777777766666666644
No 187
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.33 Score=57.37 Aligned_cols=169 Identities=17% Similarity=0.176 Sum_probs=98.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh----HHHHHHHHHHHc-cCcEEEEEcCcccccccccccCc----
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV----ERAEKLRQRLKN-VKRVLVILDNIWKLLNLDAVGIP---- 248 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~----~~~~~l~~~l~~-~k~~LlvlDdv~~~~~~~~~~~~---- 248 (1698)
|=--++||+|.|||+++.++++... ||...-- ..-..+++-|.. ..+-.||+.||+-..+...-...
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~ 311 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKEN 311 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeeccccCcHHHHHHHHhCCCCcEEEEeeccccccccccccccccc
Confidence 4567899999999999999999764 5543322 122236655543 36778888888765322111110
Q ss_pred ------------ccccccccCC-CCCCeEEEEEeCchhhhhc---ccCC-cceEEccCCCHHHHHHHHHHHhCCCCCCCc
Q 000302 249 ------------FGDVKKERND-DRSRCTVLLTSRNRDVLCN---DMNS-QKFFLIEVLSYEEAWCLFEKIVGDSAKASD 311 (1698)
Q Consensus 249 ------------~~~~~~~~~~-~~~g~kilvTtR~~~v~~~---~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~ 311 (1698)
+-+..|..++ ++....||+||-..+-... ..|. ...+.+.--+.+....||++..|....+
T Consensus 312 ~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h-- 389 (457)
T KOG0743|consen 312 FEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDH-- 389 (457)
T ss_pred ccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCc--
Confidence 1122222222 2334456777766644332 1222 3466788888898999999998753322
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHH-HhcCCchh--HHHHHHHHHc
Q 000302 312 FRVIADEIVRRCGGLPVAIKTIANA-LKNKRLYV--WNDSLERLRN 354 (1698)
Q Consensus 312 ~~~~~~~i~~~c~GlPlai~~~~~~-l~~~~~~~--w~~~~~~l~~ 354 (1698)
.++.+|.+.-.|.-+.=..||.. |+++...+ -+.+.+.++.
T Consensus 390 --~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~ 433 (457)
T KOG0743|consen 390 --RLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALES 433 (457)
T ss_pred --chhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 34556666667766665666654 56664332 4555554443
No 188
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.00057 Score=73.94 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=41.1
Q ss_pred ceeEEEecCCCcccCC--cccc-CCCcccEEEccCccCCCccc----cccccccceeecCCCCCC----ccchHhhcccc
Q 000302 531 ELRVVHFTRTCFLSLP--SSLV-CLISLRTLSLEGCQVGDVAI----VGQLKKLEILSFRNSDIQ----QLPREIGQLVQ 599 (1698)
Q Consensus 531 ~LrvL~L~~~~i~~lp--~~i~-~L~~Lr~L~L~~~~l~~~~~----i~~L~~L~~L~Ls~~~i~----~LP~~i~~L~~ 599 (1698)
.+.+|.+.++.|...- ..|+ ..++++.|||.+|.|++.+. +.+|++|++|+|+.|.+. .+| ..+.+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccc
Confidence 3445566666654321 1232 35677777777777775432 346667777777766433 333 23455
Q ss_pred ccEecccCc
Q 000302 600 LRLLDLRNC 608 (1698)
Q Consensus 600 L~~L~L~~~ 608 (1698)
|++|-|.|+
T Consensus 123 l~~lVLNgT 131 (418)
T KOG2982|consen 123 LRVLVLNGT 131 (418)
T ss_pred eEEEEEcCC
Confidence 666655554
No 189
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.39 E-value=0.00091 Score=64.16 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=57.9
Q ss_pred ccCCceeEEEecCCCcccCCccccCC-CcccEEEccCccCCC-ccccccccccceeecCCCCCCccchHhhccccccEec
Q 000302 527 EGMNELRVVHFTRTCFLSLPSSLVCL-ISLRTLSLEGCQVGD-VAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLD 604 (1698)
Q Consensus 527 ~~l~~LrvL~L~~~~i~~lp~~i~~L-~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~ 604 (1698)
.+-.+|...+|++|.+.++|..|... ..+.+|+|++|.+++ |..+..+..|+.|+++.|.+...|+-|..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 34456666777777777777666543 366677777776664 4556666667777777766666666666666666666
Q ss_pred ccCcccccccCch
Q 000302 605 LRNCRRLQAIAPN 617 (1698)
Q Consensus 605 L~~~~~l~~lp~~ 617 (1698)
..++ ....+|.+
T Consensus 130 s~~n-a~~eid~d 141 (177)
T KOG4579|consen 130 SPEN-ARAEIDVD 141 (177)
T ss_pred CCCC-ccccCcHH
Confidence 6666 34445543
No 190
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.37 E-value=0.0072 Score=66.42 Aligned_cols=33 Identities=30% Similarity=0.554 Sum_probs=26.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
.++|+|..|+||||++..+..... +.|+++.++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~ 47 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLI 47 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEE
Confidence 678999999999999999987754 347776665
No 191
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.36 E-value=0.023 Score=59.61 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=76.6
Q ss_pred chHHHHHHHHHHHhcCCc-eEEEEEcCCCchHHHHHHHHHHHHhh-------------------cccCCEEEEh------
Q 000302 160 SRMKIFQNIMEVLKDTNV-GMIGVYGVNGVGKTTLVKQIAMQVIE-------------------DKLFDKVVFV------ 213 (1698)
Q Consensus 160 gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~~~~------ 213 (1698)
|.++..+.+.+++..+.. ..+-++|+.|+||+|+|..+++..-. ..+.|....-
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 556777888888876654 57899999999999999999875432 2244544433
Q ss_pred -HHHHHHH---HHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEeCchh-hhhcccCCc
Q 000302 214 -ERAEKLR---QRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD-VLCNDMNSQ 282 (1698)
Q Consensus 214 -~~~~~l~---~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~-v~~~~~~~~ 282 (1698)
-..+.++ +.+. .+++=.+|+||++.. ..++.+...+-+ ...++++|++|++.. +........
T Consensus 81 ~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe-------pp~~~~fiL~t~~~~~il~TI~SRc 153 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE-------PPENTYFILITNNPSKILPTIRSRC 153 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS-------TTTTEEEEEEES-GGGS-HHHHTTS
T ss_pred hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC-------CCCCEEEEEEECChHHChHHHHhhc
Confidence 1234444 3332 146778999999886 456666655555 557888888887764 332233445
Q ss_pred ceEEccCCC
Q 000302 283 KFFLIEVLS 291 (1698)
Q Consensus 283 ~~~~l~~L~ 291 (1698)
..+.+.+++
T Consensus 154 ~~i~~~~ls 162 (162)
T PF13177_consen 154 QVIRFRPLS 162 (162)
T ss_dssp EEEEE----
T ss_pred eEEecCCCC
Confidence 566666654
No 192
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.34 E-value=0.0048 Score=63.72 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=53.1
Q ss_pred hccCCceeEEEecCCCcccCCccccC-CCcccEEEccCccCC---CccccccccccceeecCCCCCCccch----Hhhcc
Q 000302 526 FEGMNELRVVHFTRTCFLSLPSSLVC-LISLRTLSLEGCQVG---DVAIVGQLKKLEILSFRNSDIQQLPR----EIGQL 597 (1698)
Q Consensus 526 f~~l~~LrvL~L~~~~i~~lp~~i~~-L~~Lr~L~L~~~~l~---~~~~i~~L~~L~~L~Ls~~~i~~LP~----~i~~L 597 (1698)
|..++.|.+|.|.+|.|..+-..+.. +.+|..|.|.+|.|. ++..+..++.|++|.+-+|.+..-+. -+.++
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 45666777777777777665444433 345777777777655 34555666677777777776665543 25677
Q ss_pred ccccEecccCc
Q 000302 598 VQLRLLDLRNC 608 (1698)
Q Consensus 598 ~~L~~L~L~~~ 608 (1698)
++|++||..+-
T Consensus 140 p~l~~LDF~kV 150 (233)
T KOG1644|consen 140 PSLRTLDFQKV 150 (233)
T ss_pred CcceEeehhhh
Confidence 77777777654
No 193
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.34 E-value=0.032 Score=74.26 Aligned_cols=164 Identities=16% Similarity=0.224 Sum_probs=94.7
Q ss_pred cccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEE-------EEhH
Q 000302 155 YEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKV-------VFVE 214 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-------~~~~ 214 (1698)
...+.|.+..++.+.+.+.- ...+-|.++|++|+|||++|+.+++..... |-.+ -|++
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--fi~v~~~~l~~~~vG 529 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--FIAVRGPEILSKWVG 529 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--EEEEehHHHhhcccC
Confidence 34567888887777776540 123468899999999999999999976422 3111 1332
Q ss_pred ----HHHHHHHHHHccCcEEEEEcCcccccc--------------cccccCcccccccccCCCCCCeEEEEEeCchhhhh
Q 000302 215 ----RAEKLRQRLKNVKRVLVILDNIWKLLN--------------LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC 276 (1698)
Q Consensus 215 ----~~~~l~~~l~~~k~~LlvlDdv~~~~~--------------~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~ 276 (1698)
....+.+..++.....|++|+++.... ...+...+.. . ....+--||.||...+...
T Consensus 530 ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg----~-~~~~~v~vI~aTn~~~~ld 604 (733)
T TIGR01243 530 ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDG----I-QELSNVVVIAATNRPDILD 604 (733)
T ss_pred cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhc----c-cCCCCEEEEEeCCChhhCC
Confidence 223344444445779999999865310 0111111111 0 0223455666775554332
Q ss_pred cc-c---CCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000302 277 ND-M---NSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 327 (1698)
Q Consensus 277 ~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 327 (1698)
.. . .-...+.++..+.++-.++|+.........++. -...+++.+.|.-
T Consensus 605 ~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred HhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 21 1 125678899999999999998776432211111 1345777787755
No 194
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.32 E-value=0.006 Score=63.88 Aligned_cols=87 Identities=18% Similarity=0.298 Sum_probs=60.5
Q ss_pred CCcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-----HHHHHHHHHHH---
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV-----ERAEKLRQRLK--- 224 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~-----~~~~~l~~~l~--- 224 (1698)
....++||-+..++.+.-...+++.+-+.|.||+|+||||-+..+++..--...=+.+.=. ..++.+|.+++
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FA 103 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFA 103 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHH
Confidence 3446789999999999888889999999999999999999888888764322111111111 12344444443
Q ss_pred -------ccCcEEEEEcCcccc
Q 000302 225 -------NVKRVLVILDNIWKL 239 (1698)
Q Consensus 225 -------~~k~~LlvlDdv~~~ 239 (1698)
+++.-.||||..+..
T Consensus 104 Q~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 104 QKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HhhccCCCCceeEEEeeccchh
Confidence 256678999998876
No 195
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.29 E-value=0.23 Score=66.30 Aligned_cols=46 Identities=30% Similarity=0.350 Sum_probs=37.9
Q ss_pred cccchHHHHHHHHHHHh------cCCceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 157 QFDSRMKIFQNIMEVLK------DTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 157 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.++|.+..++.|.+++. ..+.+++.++|++|+|||++|+.+++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999888764 22345899999999999999999998864
No 196
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.067 Score=62.91 Aligned_cols=152 Identities=19% Similarity=0.227 Sum_probs=93.6
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhc---------------------ccCCEEE------------
Q 000302 165 FQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIED---------------------KLFDKVV------------ 211 (1698)
Q Consensus 165 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~~~~------------ 211 (1698)
.+++... ...-.+.+-++|+.|+|||++|..++...-.+ .|.|...
T Consensus 10 ~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~ 88 (342)
T PRK06964 10 WNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPG 88 (342)
T ss_pred HHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccc
Confidence 3444443 33335688899999999999999998754221 2333322
Q ss_pred ------------------------EhHHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCC
Q 000302 212 ------------------------FVERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRS 261 (1698)
Q Consensus 212 ------------------------~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~ 261 (1698)
-|+.+..+.+.+. ++++-.+|+|+++.. ..++.+.+.+-+ -..
T Consensus 89 ~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~ 161 (342)
T PRK06964 89 AADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE-------PPP 161 (342)
T ss_pred cccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC-------CCc
Confidence 2233344444443 246668889999877 345666555544 445
Q ss_pred CeEEEEEe-CchhhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHH
Q 000302 262 RCTVLLTS-RNRDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTI 333 (1698)
Q Consensus 262 g~kilvTt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 333 (1698)
++.+|++| +...+..........+.+.+++.++..+.+.+. |. ++ ...++..++|-|..+..+
T Consensus 162 ~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~----~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 162 GTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV----AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred CcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC----Ch----HHHHHHHcCCCHHHHHHH
Confidence 66555555 445544322344578999999999998888775 31 11 223578899999755443
No 197
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.21 E-value=0.069 Score=62.98 Aligned_cols=180 Identities=17% Similarity=0.188 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHH-HHHHHHHh-------------------------hcccCCEEEEh-
Q 000302 161 RMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLV-KQIAMQVI-------------------------EDKLFDKVVFV- 213 (1698)
Q Consensus 161 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~-------------------------~~~~F~~~~~~- 213 (1698)
|.+..++|..||.+..-.+|.|.||-|+||+.|+ .++.++.+ +-++|...-|+
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw~n 80 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKNVLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSWMN 80 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCCEEEEEChHhhhccChHHHHHHHHHhcCCCcchHHHH
Confidence 5678899999999888889999999999999999 66654321 12345666665
Q ss_pred ---------------------------------HHHHHHHH-----H--------HH--------ccCcEEEEEcCcccc
Q 000302 214 ---------------------------------ERAEKLRQ-----R--------LK--------NVKRVLVILDNIWKL 239 (1698)
Q Consensus 214 ---------------------------------~~~~~l~~-----~--------l~--------~~k~~LlvlDdv~~~ 239 (1698)
.....+++ + ++ .++|-+||+|++-..
T Consensus 81 Siss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF~~k 160 (431)
T PF10443_consen 81 SISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNFLHK 160 (431)
T ss_pred HHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcchhcc
Confidence 00111111 0 00 024779999998554
Q ss_pred cccccccCcccccccc--cCCCCCCeEEEEEeCchhhhhc---cc--CCcceEEccCCCHHHHHHHHHHHhCCCCCC---
Q 000302 240 LNLDAVGIPFGDVKKE--RNDDRSRCTVLLTSRNRDVLCN---DM--NSQKFFLIEVLSYEEAWCLFEKIVGDSAKA--- 309 (1698)
Q Consensus 240 ~~~~~~~~~~~~~~~~--~~~~~~g~kilvTtR~~~v~~~---~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~--- 309 (1698)
.+-+.+. +..+++| ..-..+-..||++|-+...... .+ ...+.+.|...+.+.|.++...+.......
T Consensus 161 ~~~~~~i--y~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~ 238 (431)
T PF10443_consen 161 AEENDFI--YDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSD 238 (431)
T ss_pred CcccchH--HHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccccccccc
Confidence 2111110 0001111 0013455678888877654442 22 234688899999999999998887532100
Q ss_pred ----------------CchHHHHHHHHHHhCCChHHHHHHHHHHhcCCc
Q 000302 310 ----------------SDFRVIADEIVRRCGGLPVAIKTIANALKNKRL 342 (1698)
Q Consensus 310 ----------------~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~ 342 (1698)
.....-....+...||=-.-+..+++.++....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~ 287 (431)
T PF10443_consen 239 SKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGES 287 (431)
T ss_pred ccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCC
Confidence 122333567788889988889999999877543
No 198
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.20 E-value=0.011 Score=58.85 Aligned_cols=29 Identities=45% Similarity=0.447 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDK 205 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 205 (1698)
...|+|.||+|+||||+++.+++..+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999887653
No 199
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.18 E-value=0.15 Score=60.02 Aligned_cols=164 Identities=15% Similarity=0.191 Sum_probs=97.8
Q ss_pred cccccchHHHHHHHHHHHh----cCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-----------------
Q 000302 155 YEQFDSRMKIFQNIMEVLK----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV----------------- 213 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~----------------- 213 (1698)
....+||+.+++.+.+++. ......+-|.|-+|.|||.+...++.+......=-+++++
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHH
Confidence 3567899999999999987 3456789999999999999999999887643211233444
Q ss_pred -------------HHHHHHHHHHHccC-cEEEEEcCccccc--ccccccCc--ccccccccCCCCCCeEEEEEeC-c---
Q 000302 214 -------------ERAEKLRQRLKNVK-RVLVILDNIWKLL--NLDAVGIP--FGDVKKERNDDRSRCTVLLTSR-N--- 271 (1698)
Q Consensus 214 -------------~~~~~l~~~l~~~k-~~LlvlDdv~~~~--~~~~~~~~--~~~~~~~~~~~~~g~kilvTtR-~--- 271 (1698)
+..+.+.++..+.+ -+++|+|.++.-. .-..+... +| .-.++++|+.-- +
T Consensus 229 ~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp--------~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 229 SLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP--------KLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc--------cCCcceeeeeeehhhhh
Confidence 01122333333333 7899999987752 11111111 22 234555554321 1
Q ss_pred ---hhhhhc---ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCC
Q 000302 272 ---RDVLCN---DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGL 326 (1698)
Q Consensus 272 ---~~v~~~---~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 326 (1698)
+...+. ..-....+..+|-+.++-.++|+.+.............++-+|+|+.|.
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAP 361 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccC
Confidence 001110 1123567778899999999999998854333333333444455555543
No 200
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.17 E-value=0.0057 Score=63.21 Aligned_cols=124 Identities=20% Similarity=0.260 Sum_probs=65.0
Q ss_pred eEEEecCCCcccCCcccc-CCCcccEEEccCccCCCccccccccccceeecCCCCCCccchHhhc-cccccEecccCccc
Q 000302 533 RVVHFTRTCFLSLPSSLV-CLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREIGQ-LVQLRLLDLRNCRR 610 (1698)
Q Consensus 533 rvL~L~~~~i~~lp~~i~-~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~-L~~L~~L~L~~~~~ 610 (1698)
|.++|.+..+...-. ++ -+.....+||++|.+..+..+..+..|.+|.|++|+|..+-..++. +.+|..|.|.+| +
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-s 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-S 99 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-c
Confidence 455555554432211 11 1224556777777776667777777777777777777766544543 345777777666 3
Q ss_pred ccccCc-hhhccCccCceecccCcccccccccCCCccchhhhCCCCCCCEEEEE
Q 000302 611 LQAIAP-NVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIH 663 (1698)
Q Consensus 611 l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~ 663 (1698)
+..+-. +-+..+++|++|.+-+|.+. ...+...--+..+++|+.|+..
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~-----~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVE-----HKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchh-----cccCceeEEEEecCcceEeehh
Confidence 433311 01345556666665555432 1112222234455555555554
No 201
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.15 E-value=0.027 Score=68.85 Aligned_cols=169 Identities=15% Similarity=0.204 Sum_probs=111.2
Q ss_pred CCcccccchHHHHHHHHHHHhcCC-ceEEEEEcCCCchHHHHHHHHHHHHhhcc-------------------cCCEEEE
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIEDK-------------------LFDKVVF 212 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~~ 212 (1698)
..+.+++|.+-....|.+++..+. ..-....|+-|+||||+|+.+++...-.+ .|--++-
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviE 92 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIE 92 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchh
Confidence 345678999999999999988554 45677889999999999999987653321 1222222
Q ss_pred h--------HHHHHHHHHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeE-EEEEeCchhhhhc
Q 000302 213 V--------ERAEKLRQRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCT-VLLTSRNRDVLCN 277 (1698)
Q Consensus 213 ~--------~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~k-ilvTtR~~~v~~~ 277 (1698)
+ +.++.+.+... ++|.=..|+|+|... ..|+.+..-+-+ .-...+ |+.||-...+...
T Consensus 93 iDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-------PP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 93 IDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-------PPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred hhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-------CccCeEEEEecCCcCcCchh
Confidence 2 23334444443 245558899999765 456766655543 233445 4555555555544
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHH
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 329 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 329 (1698)
.......|.++.++.++-...+...+..+....+ ++...-|++...|-..-
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~RD 216 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSLRD 216 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCChhh
Confidence 4556789999999999999888888854332222 45566788888885543
No 202
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.082 Score=64.96 Aligned_cols=82 Identities=27% Similarity=0.387 Sum_probs=56.8
Q ss_pred cccchHHHHHHHHHHHh------cCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCE---------------EEEh-H
Q 000302 157 QFDSRMKIFQNIMEVLK------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK---------------VVFV-E 214 (1698)
Q Consensus 157 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~---------------~~~~-~ 214 (1698)
+-+|.++.+++|++.+. +.+-+++..+|++|||||.+|+.++.-..- +.|.. +-|| .
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR-kFfRfSvGG~tDvAeIkGHRRTYVGA 490 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR-KFFRFSVGGMTDVAEIKGHRRTYVGA 490 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC-ceEEEeccccccHHhhcccceeeecc
Confidence 45799999999999886 446689999999999999999999987642 22211 1111 1
Q ss_pred HHHHHHHHHHc--cCcEEEEEcCcccc
Q 000302 215 RAEKLRQRLKN--VKRVLVILDNIWKL 239 (1698)
Q Consensus 215 ~~~~l~~~l~~--~k~~LlvlDdv~~~ 239 (1698)
-..++.+.|++ ..+-|+.+|.|+..
T Consensus 491 MPGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 491 MPGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred CChHHHHHHHhhCCCCceEEeehhhhh
Confidence 11234444442 46779999998654
No 203
>PRK08116 hypothetical protein; Validated
Probab=96.12 E-value=0.0079 Score=68.74 Aligned_cols=34 Identities=38% Similarity=0.425 Sum_probs=27.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
.-+.++|..|+|||.||..+++....+ -..++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~ 148 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFV 148 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEE
Confidence 358899999999999999999998654 2344554
No 204
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.0038 Score=67.84 Aligned_cols=175 Identities=20% Similarity=0.204 Sum_probs=99.0
Q ss_pred EECCCCCCCCCCcc----cCCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCCccc-cCCCcccEEEcc
Q 000302 487 ISLPNRDIDELPER----LECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLPSSL-VCLISLRTLSLE 561 (1698)
Q Consensus 487 lsl~~~~~~~l~~~----~~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i-~~L~~Lr~L~L~ 561 (1698)
+.+.++.|+..... ..+++++.+++.+|.-+.+.=-..++..|++|++|+|++|.+...-.++ -.+++||+|-|.
T Consensus 50 lvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLN 129 (418)
T KOG2982|consen 50 LVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLN 129 (418)
T ss_pred heecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEc
Confidence 44555666654332 2578888888888822222222456788999999999999765422222 356789999999
Q ss_pred CccCCC--c-cccccccccceeecCCCCCCccc---hHhhccc-cccEecccCcc-------------------------
Q 000302 562 GCQVGD--V-AIVGQLKKLEILSFRNSDIQQLP---REIGQLV-QLRLLDLRNCR------------------------- 609 (1698)
Q Consensus 562 ~~~l~~--~-~~i~~L~~L~~L~Ls~~~i~~LP---~~i~~L~-~L~~L~L~~~~------------------------- 609 (1698)
+..+.- . .....++.++.|.+|.|++..+- ..+.... .+++|...+|.
T Consensus 130 gT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 130 GTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG 209 (418)
T ss_pred CCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC
Confidence 988762 2 55667777777777766333221 0111111 22333332221
Q ss_pred cccccCc-hhhccCccCceecccCcccccccccCCCccchhhhCCCCCCCEEEEEecccc
Q 000302 610 RLQAIAP-NVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRDAR 668 (1698)
Q Consensus 610 ~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 668 (1698)
-++.... .....++.+-.|+++.+.+. +.+.+.+|.++++|+.|.+..+.+.
T Consensus 210 PlK~~s~ek~se~~p~~~~LnL~~~~id-------swasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 210 PLKTESSEKGSEPFPSLSCLNLGANNID-------SWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchhhcccCCCCCcchhhhhcccccc-------cHHHHHHHcCCchhheeeccCCccc
Confidence 1111110 01233444445555555543 5667788888888888888766544
No 205
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.12 Score=62.38 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=85.1
Q ss_pred CcccccchHHHHHHHHHHHh---cC---------CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh--------
Q 000302 154 AYEQFDSRMKIFQNIMEVLK---DT---------NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV-------- 213 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~-------- 213 (1698)
....+-|.+..+.++.+++. .+ ..+=|-++|++|.|||.||++++.+..+- |-.+.--
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f~~isApeivSGvSG 265 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--FLSISAPEIVSGVSG 265 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--eEeecchhhhcccCc
Confidence 35567788888888887775 11 24567899999999999999999987653 3222111
Q ss_pred ---HHHHHHHHHHHccCcEEEEEcCccccc--------cccc-ccCc-ccccccccCCC--CCCeEEEEEeCchhhhhc-
Q 000302 214 ---ERAEKLRQRLKNVKRVLVILDNIWKLL--------NLDA-VGIP-FGDVKKERNDD--RSRCTVLLTSRNRDVLCN- 277 (1698)
Q Consensus 214 ---~~~~~l~~~l~~~k~~LlvlDdv~~~~--------~~~~-~~~~-~~~~~~~~~~~--~~g~kilvTtR~~~v~~~- 277 (1698)
..+.++.+.....-.+++++|+++... +.+. +... +..|.+..... +.+--||-+|-.++....
T Consensus 266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpa 345 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPA 345 (802)
T ss_pred ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHH
Confidence 334455555555689999999997651 1111 1111 11111111111 223333333333332221
Q ss_pred --ccCC-cceEEccCCCHHHHHHHHHHHh
Q 000302 278 --DMNS-QKFFLIEVLSYEEAWCLFEKIV 303 (1698)
Q Consensus 278 --~~~~-~~~~~l~~L~~~e~~~Lf~~~~ 303 (1698)
..|. .+.|.+..-++++-.++++..+
T Consensus 346 LRRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 346 LRRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred HhccccccceeeecCCchHHHHHHHHHHH
Confidence 1222 4567777777777777777776
No 206
>PRK08181 transposase; Validated
Probab=96.05 E-value=0.005 Score=69.83 Aligned_cols=64 Identities=28% Similarity=0.380 Sum_probs=40.7
Q ss_pred HHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh---HHHHH------------HHHHHHccCcEEEEEc
Q 000302 170 EVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV---ERAEK------------LRQRLKNVKRVLVILD 234 (1698)
Q Consensus 170 ~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~---~~~~~------------l~~~l~~~k~~LlvlD 234 (1698)
+|+. +..-+.++|+.|+|||.||..+++..... ...++|+ +.... ..+.+. +-=|||||
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIID 174 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILD 174 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEe
Confidence 4544 23468999999999999999999877543 2334444 11221 222222 34499999
Q ss_pred Ccccc
Q 000302 235 NIWKL 239 (1698)
Q Consensus 235 dv~~~ 239 (1698)
|+...
T Consensus 175 Dlg~~ 179 (269)
T PRK08181 175 DLAYV 179 (269)
T ss_pred ccccc
Confidence 99654
No 207
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.062 Score=67.95 Aligned_cols=171 Identities=15% Similarity=0.146 Sum_probs=105.1
Q ss_pred CcccccchHHHHHHHHH---HHhcC---------CceEEEEEcCCCchHHHHHHHHHHHHhhc------ccCCEEEEh--
Q 000302 154 AYEQFDSRMKIFQNIME---VLKDT---------NVGMIGVYGVNGVGKTTLVKQIAMQVIED------KLFDKVVFV-- 213 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~---~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~~~~-- 213 (1698)
.+.++.|-++.+++|++ .|..+ -++=+-++|++|.|||-||++++-...+- ..|--..|-
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~ 388 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVG 388 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccc
Confidence 34567787766665555 44432 24567899999999999999999877643 011111111
Q ss_pred -HHHHHHHHHHHccCcEEEEEcCcccccc-----------------cccccCcccccccccCCCCCCeEEEEEeCchhhh
Q 000302 214 -ERAEKLRQRLKNVKRVLVILDNIWKLLN-----------------LDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL 275 (1698)
Q Consensus 214 -~~~~~l~~~l~~~k~~LlvlDdv~~~~~-----------------~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~ 275 (1698)
.+...+....++...+.|.+|+++...- ++++..-... .. ...+-.++-+|...++.
T Consensus 389 asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg----f~-~~~~vi~~a~tnr~d~l 463 (774)
T KOG0731|consen 389 ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG----FE-TSKGVIVLAATNRPDIL 463 (774)
T ss_pred hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC----Cc-CCCcEEEEeccCCcccc
Confidence 3445555555667888999999866521 1111111110 10 12334455566666555
Q ss_pred hc---ccCC-cceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHHH
Q 000302 276 CN---DMNS-QKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAI 330 (1698)
Q Consensus 276 ~~---~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 330 (1698)
.. ..|. .+.+.++.-+...-.++|+.++....-..+..++++ |+...-|.+=|.
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 43 1222 457788888888899999999965444455666776 899888888653
No 208
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.033 Score=68.77 Aligned_cols=137 Identities=21% Similarity=0.261 Sum_probs=82.5
Q ss_pred ccchHHHHHHHHHHHh------cCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh------------------
Q 000302 158 FDSRMKIFQNIMEVLK------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV------------------ 213 (1698)
Q Consensus 158 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~------------------ 213 (1698)
-+|-++.+++|++.|. +-+.+++.+|||+|||||.|++.+++....+ |-. +-+
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--fvR-~sLGGvrDEAEIRGHRRTYIG 401 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--FVR-ISLGGVRDEAEIRGHRRTYIG 401 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--EEE-EecCccccHHHhccccccccc
Confidence 4699999999999986 3345799999999999999999999876422 322 222
Q ss_pred HHHHHHHHHHHc--cCcEEEEEcCccccc------------------ccccccCcccccccccCCCCCCeEEE-EEeCch
Q 000302 214 ERAEKLRQRLKN--VKRVLVILDNIWKLL------------------NLDAVGIPFGDVKKERNDDRSRCTVL-LTSRNR 272 (1698)
Q Consensus 214 ~~~~~l~~~l~~--~k~~LlvlDdv~~~~------------------~~~~~~~~~~~~~~~~~~~~~g~kil-vTtR~~ 272 (1698)
....++.+.+++ .++-+++||.|+... +-..+....-++ .--=|+|+ |||-|.
T Consensus 402 amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev------~yDLS~VmFiaTANs 475 (782)
T COG0466 402 AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEV------PYDLSKVMFIATANS 475 (782)
T ss_pred cCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccC------ccchhheEEEeecCc
Confidence 011233333332 478899999997651 111111111100 01124444 444332
Q ss_pred -h-hhhcccCCcceEEccCCCHHHHHHHHHHHh
Q 000302 273 -D-VLCNDMNSQKFFLIEVLSYEEAWCLFEKIV 303 (1698)
Q Consensus 273 -~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 303 (1698)
+ +....++.-.++++.+-+++|-.+.=+++.
T Consensus 476 l~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 476 LDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 2 333234556788999988888776666554
No 209
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.21 Score=61.44 Aligned_cols=146 Identities=14% Similarity=0.215 Sum_probs=86.4
Q ss_pred CCCcccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEE-------E
Q 000302 152 YTAYEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKV-------V 211 (1698)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-------~ 211 (1698)
.....++-|.++.+.++.+.+.- ...+-|-.||++|.|||++|+.+++..... |-.+ .
T Consensus 430 ~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--FlsvkgpEL~sk 507 (693)
T KOG0730|consen 430 NVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--FLSVKGPELFSK 507 (693)
T ss_pred CCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--eeeccCHHHHHH
Confidence 33445666787777777666551 245678899999999999999999987644 5433 4
Q ss_pred EhH----HHHHHHHHHHccCcEEEEEcCcccccc-------------cccccCcccccccccCCCCCCeEEEEEe-Cchh
Q 000302 212 FVE----RAEKLRQRLKNVKRVLVILDNIWKLLN-------------LDAVGIPFGDVKKERNDDRSRCTVLLTS-RNRD 273 (1698)
Q Consensus 212 ~~~----~~~~l~~~l~~~k~~LlvlDdv~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~kilvTt-R~~~ 273 (1698)
|++ ....+.++.++--.+.|.||.++.... +..+..-+..+ ...++--||-.| |...
T Consensus 508 ~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~-----e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 508 YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGL-----EALKNVLVIAATNRPDM 582 (693)
T ss_pred hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccc-----cccCcEEEEeccCChhh
Confidence 552 234445555555679999999876511 11111111110 011222333333 4333
Q ss_pred hhhcccC---CcceEEccCCCHHHHHHHHHHHhC
Q 000302 274 VLCNDMN---SQKFFLIEVLSYEEAWCLFEKIVG 304 (1698)
Q Consensus 274 v~~~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~ 304 (1698)
+-...+. -...+.++.-+.+.-.++|+..+.
T Consensus 583 ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred cCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 2222233 245777777777777899999984
No 210
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.95 E-value=0.04 Score=73.02 Aligned_cols=83 Identities=25% Similarity=0.363 Sum_probs=55.0
Q ss_pred cccchHHHHHHHHHHHhc-------C--CceEEEEEcCCCchHHHHHHHHHHHHhhc-ccCCEEEEh-------------
Q 000302 157 QFDSRMKIFQNIMEVLKD-------T--NVGMIGVYGVNGVGKTTLVKQIAMQVIED-KLFDKVVFV------------- 213 (1698)
Q Consensus 157 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~~------------- 213 (1698)
.++|.+..++.+.+.+.. + ...++.++|+.|+|||+||+.+++..... ..|+..-|.
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~ 534 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPP 534 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCC
Confidence 467888888888888762 1 23468899999999999999999876311 011111111
Q ss_pred -----HHHHHHHHHHHccCcEEEEEcCcccc
Q 000302 214 -----ERAEKLRQRLKNVKRVLVILDNIWKL 239 (1698)
Q Consensus 214 -----~~~~~l~~~l~~~k~~LlvlDdv~~~ 239 (1698)
+....+.+.+++...-+++||+++..
T Consensus 535 gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 535 GYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred CCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 11234555555445669999999766
No 211
>PRK07261 topology modulation protein; Provisional
Probab=95.95 E-value=0.014 Score=61.99 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=37.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhc-ccCCEEEEh---------HHHHHHHHHHHccCcEEEEEcCcccc
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVIED-KLFDKVVFV---------ERAEKLRQRLKNVKRVLVILDNIWKL 239 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~~---------~~~~~l~~~l~~~k~~LlvlDdv~~~ 239 (1698)
.|.|+|++|+||||||++++...... -+.|...|- +....+.+.+.+ .+ .|+|.....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--wIidg~~~~ 69 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLK-HD--WIIDGNYSW 69 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhC-CC--EEEcCcchh
Confidence 58999999999999999998765322 235555554 223334444443 44 577776543
No 212
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.93 E-value=0.0045 Score=65.93 Aligned_cols=59 Identities=36% Similarity=0.478 Sum_probs=38.0
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh---HH------------HHHHHHHHHccCcEEEEEcCcccc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV---ER------------AEKLRQRLKNVKRVLVILDNIWKL 239 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~---~~------------~~~l~~~l~~~k~~LlvlDdv~~~ 239 (1698)
..-+.++|..|+|||.||..+++....+ .+. +.|+ +. ...+.+++. +-=||||||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~-v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRK-GYS-VLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccC-Ccc-eeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 4579999999999999999999887653 333 3343 11 122333333 3448889999665
No 213
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.89 E-value=0.078 Score=70.61 Aligned_cols=166 Identities=16% Similarity=0.163 Sum_probs=91.4
Q ss_pred CcccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEE-------Eh
Q 000302 154 AYEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVV-------FV 213 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-------~~ 213 (1698)
...++.|.+..++.+.+++.- ...+-|.++|+.|+||||||+.+++..... |-.+- ++
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~i~i~~~~i~~~~~ 253 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--FISINGPEIMSKYY 253 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--EEEEecHHHhcccc
Confidence 345578999999988887641 123568899999999999999999876422 21110 01
Q ss_pred ----HHHHHHHHHHHccCcEEEEEcCcccccc-------------cccccCcccccccccCCCCCCeEEEE-EeCchh-h
Q 000302 214 ----ERAEKLRQRLKNVKRVLVILDNIWKLLN-------------LDAVGIPFGDVKKERNDDRSRCTVLL-TSRNRD-V 274 (1698)
Q Consensus 214 ----~~~~~l~~~l~~~k~~LlvlDdv~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~kilv-TtR~~~-v 274 (1698)
.....+.+........+|++||++.... ...+...+.. . ...+..++| ||.... +
T Consensus 254 g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~----l--~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 254 GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDG----L--KGRGRVIVIGATNRPDAL 327 (733)
T ss_pred cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhc----c--ccCCCEEEEeecCChhhc
Confidence 1222333333335668999999865310 0111111111 0 122334444 444332 1
Q ss_pred hhc--ccC-CcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHH
Q 000302 275 LCN--DMN-SQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 329 (1698)
Q Consensus 275 ~~~--~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 329 (1698)
-.. ..+ -...+.+...+.++-.++++.........+ ......+++.+.|.--|
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCHH
Confidence 110 011 134677888888888888886653221111 11245688888886543
No 214
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.88 E-value=0.017 Score=67.29 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHhc----CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh--HHHHHHHH---------HHH
Q 000302 160 SRMKIFQNIMEVLKD----TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV--ERAEKLRQ---------RLK 224 (1698)
Q Consensus 160 gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~--~~~~~l~~---------~l~ 224 (1698)
+|....+...+++.. ...+-+.++|..|+|||.||..+++....+ .+.+...- +....++. .+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~ 213 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GVSSTLLHFPEFIRELKNSISDGSVKEKID 213 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEEHHHHHHHHHHHHhcCcHHHHHH
Confidence 566666666666652 234578999999999999999999998743 44443322 12222221 111
Q ss_pred c-cCcEEEEEcCcccc--cccc
Q 000302 225 N-VKRVLVILDNIWKL--LNLD 243 (1698)
Q Consensus 225 ~-~k~~LlvlDdv~~~--~~~~ 243 (1698)
. .+-=||||||+... .+|.
T Consensus 214 ~l~~~dlLiIDDiG~e~~s~~~ 235 (306)
T PRK08939 214 AVKEAPVLMLDDIGAEQMSSWV 235 (306)
T ss_pred HhcCCCEEEEecCCCccccHHH
Confidence 1 24559999999655 4454
No 215
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.88 E-value=0.012 Score=68.39 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=40.8
Q ss_pred cccchHHHHHHHHHHHhc------CCceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 157 QFDSRMKIFQNIMEVLKD------TNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 157 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
.++|.++.++++++++.. ...+++.++|+.|+||||||+.+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 689999999999999873 24578999999999999999999987753
No 216
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.88 E-value=0.019 Score=76.49 Aligned_cols=84 Identities=19% Similarity=0.238 Sum_probs=56.3
Q ss_pred ccccchHHHHHHHHHHHhc-------C--CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-------------
Q 000302 156 EQFDSRMKIFQNIMEVLKD-------T--NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV------------- 213 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~------------- 213 (1698)
..++|.+..++.+.+.+.. + ...++.++|+.|+|||.+|+.++........+-.++-+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~ 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence 4578999999999988851 1 23478999999999999999998875321111111111
Q ss_pred ---------HHHHHHHHHHHccCcEEEEEcCcccc
Q 000302 214 ---------ERAEKLRQRLKNVKRVLVILDNIWKL 239 (1698)
Q Consensus 214 ---------~~~~~l~~~l~~~k~~LlvlDdv~~~ 239 (1698)
+....+.+.+++...-+|+||++...
T Consensus 646 g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 646 GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEEechhhc
Confidence 11123455666556779999999654
No 217
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.87 E-value=0.0066 Score=60.53 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+|+|.|++|+||||+|+++++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 218
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.82 E-value=0.036 Score=60.35 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=56.1
Q ss_pred HHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh---HHHHHHHHHHH-----------c-------
Q 000302 167 NIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV---ERAEKLRQRLK-----------N------- 225 (1698)
Q Consensus 167 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~---~~~~~l~~~l~-----------~------- 225 (1698)
+.+..+..++-+++.|.|++|+||||+++.+........ +..++.. ..+..+.+... .
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~ 86 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDE 86 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECC
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCccccc
Confidence 334444444557899999999999999999988777643 4433333 33344444421 0
Q ss_pred -----cCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeCch
Q 000302 226 -----VKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR 272 (1698)
Q Consensus 226 -----~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~ 272 (1698)
.++-+||+|++.... .+..+.... ...|+|+|+.--..
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~~~~~ll~~~---------~~~~~klilvGD~~ 131 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSRQLARLLRLA---------KKSGAKLILVGDPN 131 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS----------T-T-EEEEEE-TT
T ss_pred ccccCCcccEEEEecccccCHHHHHHHHHHH---------HhcCCEEEEECCcc
Confidence 134599999998763 444443332 23578888775443
No 219
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.82 E-value=0.17 Score=55.01 Aligned_cols=167 Identities=20% Similarity=0.292 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-----------------------------
Q 000302 163 KIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV----------------------------- 213 (1698)
Q Consensus 163 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~----------------------------- 213 (1698)
+.+..+...+.+ +..++.++|.-|+|||++++........++. +++.+
T Consensus 38 e~l~~l~~~i~d-~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~--~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~ 114 (269)
T COG3267 38 EALLMLHAAIAD-GQGILAVTGEVGSGKTVLRRALLASLNEDQV--AVVVIDKPTLSDATLLEAIVADLESQPKVNVNAV 114 (269)
T ss_pred HHHHHHHHHHhc-CCceEEEEecCCCchhHHHHHHHHhcCCCce--EEEEecCcchhHHHHHHHHHHHhccCccchhHHH
Confidence 344444444444 4469999999999999999966555443221 22232
Q ss_pred --HHHHHHHHHHHccCc-EEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEeCch-------hhhhcccCC
Q 000302 214 --ERAEKLRQRLKNVKR-VLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-------DVLCNDMNS 281 (1698)
Q Consensus 214 --~~~~~l~~~l~~~k~-~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~-------~v~~~~~~~ 281 (1698)
.....+..-.++++| ..+++||..+. ...+.+.. |.++... ...--+|+..-..+ .+.......
T Consensus 115 ~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrl-l~nl~~~---~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R 190 (269)
T COG3267 115 LEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRL-LTNLEED---SSKLLSIVLIGQPKLRPRLRLPVLRELEQR 190 (269)
T ss_pred HHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHH-HHhhccc---ccCceeeeecCCcccchhhchHHHHhhhhe
Confidence 112234444456788 99999998765 22232211 1111100 11112233332221 011100111
Q ss_pred cce-EEccCCCHHHHHHHHHHHhCCCCCC-Cch-HHHHHHHHHHhCCChHHHHHHHHH
Q 000302 282 QKF-FLIEVLSYEEAWCLFEKIVGDSAKA-SDF-RVIADEIVRRCGGLPVAIKTIANA 336 (1698)
Q Consensus 282 ~~~-~~l~~L~~~e~~~Lf~~~~~~~~~~-~~~-~~~~~~i~~~c~GlPlai~~~~~~ 336 (1698)
... |.+.|+++++.-.+++.+.+....+ +-+ .+....|.....|.|.+|..++..
T Consensus 191 ~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 191 IDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred EEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 223 8999999998888877776422212 111 445678999999999999887753
No 220
>PRK12377 putative replication protein; Provisional
Probab=95.82 E-value=0.032 Score=62.55 Aligned_cols=62 Identities=24% Similarity=0.341 Sum_probs=40.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh---HHHHHHHHH----------HHc-cCcEEEEEcCcccc
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV---ERAEKLRQR----------LKN-VKRVLVILDNIWKL 239 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~---~~~~~l~~~----------l~~-~k~~LlvlDdv~~~ 239 (1698)
....+.++|..|+|||+||.++++....+. ..++++ +....++.. +.. .+--||||||+...
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~g--~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAKG--RSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 346789999999999999999999887542 233444 222222211 110 24459999999444
No 221
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.79 E-value=0.017 Score=64.90 Aligned_cols=29 Identities=34% Similarity=0.651 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
+-..++|+|..|+||||||+++++..+.+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~ 96 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA 96 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc
Confidence 34689999999999999999999988743
No 222
>PRK06526 transposase; Provisional
Probab=95.78 E-value=0.0063 Score=68.68 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=38.0
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh---HHHHHH---------HHHHHc-cCcEEEEEcCcccc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV---ERAEKL---------RQRLKN-VKRVLVILDNIWKL 239 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~---~~~~~l---------~~~l~~-~k~~LlvlDdv~~~ 239 (1698)
..-+.++|++|+|||+||..++...... .+. +.|+ +..+.+ .+.+.+ .+.-+||+||+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~-g~~-v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA-GHR-VLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC-CCc-hhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 3568999999999999999999876543 233 3333 111111 112221 23458999999754
No 223
>PRK06921 hypothetical protein; Provisional
Probab=95.67 E-value=0.027 Score=64.30 Aligned_cols=60 Identities=25% Similarity=0.410 Sum_probs=38.8
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh---HHHHHHHH-------HHHc-cCcEEEEEcCc
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV---ERAEKLRQ-------RLKN-VKRVLVILDNI 236 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~---~~~~~l~~-------~l~~-~k~~LlvlDdv 236 (1698)
...-+.++|..|+|||+||..+++....+.. ..++++ +....+.. .+.. .+-=||||||+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g-~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl 186 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKG-VPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDL 186 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcC-ceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 4567899999999999999999998764322 334454 22222211 1111 13459999999
No 224
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.66 E-value=0.02 Score=58.97 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=23.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
..+.|+|++|+||||+|+.++......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 578999999999999999999877543
No 225
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.63 E-value=0.048 Score=71.79 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=81.1
Q ss_pred cccchHHHHHHHHHHHh------cCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-----------------
Q 000302 157 QFDSRMKIFQNIMEVLK------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV----------------- 213 (1698)
Q Consensus 157 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~----------------- 213 (1698)
..+|.+..++.|++++. .....++.++|++|+||||+|+.++...... |-.+-+-
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~~~i~~~~~~d~~~i~g~~~~~~g 400 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--YVRMALGGVRDEAEIRGHRRTYIG 400 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--EEEEEcCCCCCHHHhccchhccCC
Confidence 46899999999998886 1345689999999999999999999865421 3222111
Q ss_pred HHHHHHHHHHHc--cCcEEEEEcCcccccc-c-----ccccCcccc-----cccc---cCCCCCCeEEEEEeCchhhhhc
Q 000302 214 ERAEKLRQRLKN--VKRVLVILDNIWKLLN-L-----DAVGIPFGD-----VKKE---RNDDRSRCTVLLTSRNRDVLCN 277 (1698)
Q Consensus 214 ~~~~~l~~~l~~--~k~~LlvlDdv~~~~~-~-----~~~~~~~~~-----~~~~---~~~~~~g~kilvTtR~~~v~~~ 277 (1698)
.....+.+.+.+ ..+-+++||+++.... . ..+...+.. ..|. ..-.-.+..+|.|+....+...
T Consensus 401 ~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~a 480 (784)
T PRK10787 401 SMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAP 480 (784)
T ss_pred CCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHH
Confidence 011123333332 1345789999965421 0 111111100 0000 0001133445555544433332
Q ss_pred ccCCcceEEccCCCHHHHHHHHHHHh
Q 000302 278 DMNSQKFFLIEVLSYEEAWCLFEKIV 303 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~e~~~Lf~~~~ 303 (1698)
..+.-.++.+.+++++|-.++.+++.
T Consensus 481 Ll~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 481 LLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred HhcceeeeecCCCCHHHHHHHHHHhh
Confidence 23344578889999888777766654
No 226
>PRK09183 transposase/IS protein; Provisional
Probab=95.62 E-value=0.012 Score=66.88 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
..+.|+|+.|+|||+||..++.....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999877543
No 227
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.31 Score=51.93 Aligned_cols=82 Identities=23% Similarity=0.227 Sum_probs=54.2
Q ss_pred ccccchHHHHHHHHHHHh-------------cCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh--------H
Q 000302 156 EQFDSRMKIFQNIMEVLK-------------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV--------E 214 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~--------~ 214 (1698)
.++-|.+..+++|.++.. -+..+=|-++|++|.|||.||++|+++.... |-.++=- +
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~--firvvgsefvqkylge 232 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA--FIRVVGSEFVQKYLGE 232 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh--eeeeccHHHHHHHhcc
Confidence 345677777777777654 1245677899999999999999999987643 5444322 1
Q ss_pred ---HHHHHHHHHHccCcEEEEEcCcccc
Q 000302 215 ---RAEKLRQRLKNVKRVLVILDNIWKL 239 (1698)
Q Consensus 215 ---~~~~l~~~l~~~k~~LlvlDdv~~~ 239 (1698)
....+.+-.+++-.-.|.+|.++..
T Consensus 233 gprmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 233 GPRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred CcHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 1222333334456788999988654
No 228
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.26 Score=60.30 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
..+|+|+|++|+||||++..++.....+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999999998765543
No 229
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.024 Score=66.73 Aligned_cols=84 Identities=26% Similarity=0.362 Sum_probs=58.4
Q ss_pred cccccchH---HHHHHHHHHHhcCC---------ceEEEEEcCCCchHHHHHHHHHHHHhhc------ccCCEEEEh---
Q 000302 155 YEQFDSRM---KIFQNIMEVLKDTN---------VGMIGVYGVNGVGKTTLVKQIAMQVIED------KLFDKVVFV--- 213 (1698)
Q Consensus 155 ~~~~~gr~---~~~~~l~~~l~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~~~~--- 213 (1698)
++++.|-+ +++++|++.|.+++ .+=|-++|++|.|||-||++|+-...+. ..||-+ +|
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm-~VGvG 381 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM-FVGVG 381 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh-hhccc
Confidence 44556655 56788888998652 3568899999999999999999877653 123332 23
Q ss_pred -HHHHHHHHHHHccCcEEEEEcCcccc
Q 000302 214 -ERAEKLRQRLKNVKRVLVILDNIWKL 239 (1698)
Q Consensus 214 -~~~~~l~~~l~~~k~~LlvlDdv~~~ 239 (1698)
.++..+.+..+..-.|.|.+|.++..
T Consensus 382 ArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 382 ARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred HHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 34444555555567899999998654
No 230
>PRK06696 uridine kinase; Validated
Probab=95.49 E-value=0.022 Score=63.72 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHHh---cCCceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 160 SRMKIFQNIMEVLK---DTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 160 gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.|.+.+++|.+.+. .+...+|+|.|.+|+||||+|+.++....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46777888888775 35678999999999999999999998764
No 231
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.1 Score=66.29 Aligned_cols=143 Identities=17% Similarity=0.259 Sum_probs=85.1
Q ss_pred ccccchHHHHHHHHHHHh------c-------CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEE-------Eh--
Q 000302 156 EQFDSRMKIFQNIMEVLK------D-------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVV-------FV-- 213 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~------~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-------~~-- 213 (1698)
..+.|.+..++.+.+.+. + ...+.+-++|++|.|||.||+++++.... .|-.+. |+
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~--~fi~v~~~~l~sk~vGe 319 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS--RFISVKGSELLSKWVGE 319 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC--eEEEeeCHHHhccccch
Confidence 344566666655555443 1 23568999999999999999999996542 244433 33
Q ss_pred --HHHHHHHHHHHccCcEEEEEcCccccccccc-------------ccCcccccccccCCCCCCeEEEEEeCchhhhhcc
Q 000302 214 --ERAEKLRQRLKNVKRVLVILDNIWKLLNLDA-------------VGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCND 278 (1698)
Q Consensus 214 --~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~~ 278 (1698)
..+..+....++...+.|.+|+++....+.. +...+.. .....+..||-||-........
T Consensus 320 sek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~-----~e~~~~v~vi~aTN~p~~ld~a 394 (494)
T COG0464 320 SEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDG-----IEKAEGVLVIAATNRPDDLDPA 394 (494)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcC-----CCccCceEEEecCCCccccCHh
Confidence 2233444444446889999999976532221 1111111 0122333445555433322211
Q ss_pred c----CCcceEEccCCCHHHHHHHHHHHhCC
Q 000302 279 M----NSQKFFLIEVLSYEEAWCLFEKIVGD 305 (1698)
Q Consensus 279 ~----~~~~~~~l~~L~~~e~~~Lf~~~~~~ 305 (1698)
+ .-...+.+.+-+.++..+.|+....+
T Consensus 395 ~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 395 LLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred hcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 1 12568889999999999999999864
No 232
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.34 E-value=0.67 Score=50.76 Aligned_cols=211 Identities=12% Similarity=0.179 Sum_probs=116.4
Q ss_pred cccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhh----cccCCEEEEh-------------------
Q 000302 157 QFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIE----DKLFDKVVFV------------------- 213 (1698)
Q Consensus 157 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~~~------------------- 213 (1698)
...++++....+.....+++.+-.-++|++|.||-|.+..+.++.-- +-.-+...|.
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 45677777777777766677888999999999999988887765421 1112233333
Q ss_pred ---------HH--HHHHHHHHHc--------cCcE-EEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEeCc
Q 000302 214 ---------ER--AEKLRQRLKN--------VKRV-LVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRN 271 (1698)
Q Consensus 214 ---------~~--~~~l~~~l~~--------~k~~-LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~ 271 (1698)
++ ++.+.+...+ .+.| ++|+-.++.- +.-..+....-. -...+|+|+..-+
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk-------Ys~~~RlIl~cns 166 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEK-------YSSNCRLILVCNS 166 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHH-------HhcCceEEEEecC
Confidence 11 1222222221 2555 5555555443 222222222222 2356676654322
Q ss_pred -hhhhhcccCCcceEEccCCCHHHHHHHHHHHhCCC-CCCCchHHHHHHHHHHhCCChHHHHHHHHHHhcC---------
Q 000302 272 -RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDS-AKASDFRVIADEIVRRCGGLPVAIKTIANALKNK--------- 340 (1698)
Q Consensus 272 -~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~--------- 340 (1698)
..+........-.+++..-+++|.-..+.+.+..+ ..-| ++++.+|+++++|.---...+--+++-+
T Consensus 167 ~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~ 244 (351)
T KOG2035|consen 167 TSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQ 244 (351)
T ss_pred cccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCC
Confidence 11211112234578899999999999999988422 2222 7889999999998764444333333211
Q ss_pred --CchhHHHHHHHHHcccccccCcchHHHHHHHHHHHhcC
Q 000302 341 --RLYVWNDSLERLRNSTSRQIHGMEENVYSSIELSYSFL 378 (1698)
Q Consensus 341 --~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L 378 (1698)
...+|+-+.+........+ .....+..+-..=|+-|
T Consensus 245 ~i~~~dWe~~i~e~a~~i~~e--Qs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 245 VIPKPDWEIYIQEIARVILKE--QSPAKLLEVRGRLYELL 282 (351)
T ss_pred CCCCccHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHH
Confidence 1234998888776544221 11233444444445544
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.34 E-value=0.047 Score=61.80 Aligned_cols=63 Identities=25% Similarity=0.277 Sum_probs=40.9
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEE-h-HHHHHHHHH---------HHc--cCcEEEEEcCcccc
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVF-V-ERAEKLRQR---------LKN--VKRVLVILDNIWKL 239 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~-~-~~~~~l~~~---------l~~--~k~~LlvlDdv~~~ 239 (1698)
+..-+.++|.+|+|||.||.++++... +..+.+.+. + +....++.. +.+ .+-=||||||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 567889999999999999999999988 433433322 2 222222221 111 13349999998654
No 234
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.17 Score=55.39 Aligned_cols=170 Identities=20% Similarity=0.211 Sum_probs=94.4
Q ss_pred cccccchHHHHHHHHHHHh---------cC---CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEE------EEhHHH
Q 000302 155 YEQFDSRMKIFQNIMEVLK---------DT---NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKV------VFVERA 216 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~---------~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~------~~~~~~ 216 (1698)
..++.|-+..++.+.++.. .+ .-+-|-++|++|.||+-||++|+.... ...|... -|++..
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGES 210 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHHhccH
Confidence 4567788888888888764 22 246799999999999999999998765 2233221 244333
Q ss_pred HH----HHHHHHccCcEEEEEcCcccc---------cccccccCcccccccccCCCCCCeEEEEEeCchhhhhcccCC--
Q 000302 217 EK----LRQRLKNVKRVLVILDNIWKL---------LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNS-- 281 (1698)
Q Consensus 217 ~~----l~~~l~~~k~~LlvlDdv~~~---------~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~~~~~-- 281 (1698)
++ +.+..++.|.-.|.+|.|+.. +.-..|..-|----+..-....|.-|+=.|-.+-+....+..
T Consensus 211 EkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRF 290 (439)
T KOG0739|consen 211 EKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRF 290 (439)
T ss_pred HHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHh
Confidence 33 444445679999999998653 111111111100000000033455555566655444321111
Q ss_pred cceEEccCCCHHHH-HHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000302 282 QKFFLIEVLSYEEA-WCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 327 (1698)
Q Consensus 282 ~~~~~l~~L~~~e~-~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 327 (1698)
...+-+ ||.+..| ..+|+-+.|+....- .++-.++++++..|.-
T Consensus 291 ekRIYI-PLPe~~AR~~MF~lhlG~tp~~L-T~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 291 EKRIYI-PLPEAHARARMFKLHLGDTPHVL-TEQDFKELARKTEGYS 335 (439)
T ss_pred hcceec-cCCcHHHhhhhheeccCCCcccc-chhhHHHHHhhcCCCC
Confidence 122222 5666666 457777778543322 2334566777776644
No 235
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.33 E-value=0.035 Score=65.06 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
..-+.++|..|+|||.||..+++....+ .+ .++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~-g~-~V~y~ 217 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR-GK-SVIYR 217 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC-CC-eEEEE
Confidence 3779999999999999999999987644 23 44555
No 236
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.1 Score=66.58 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=87.6
Q ss_pred cccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcc----cCCEEEEh-----------------
Q 000302 155 YEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFV----------------- 213 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~~~----------------- 213 (1698)
.+..+||+++++++++.|.-..-.--.++|.+|||||++|.-++.+....+ .=+..++.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFE 248 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFE 248 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHH
Confidence 355789999999999999843322335789999999999999998765432 12334443
Q ss_pred HHHHHHHHHHHccCcEEEEEcCcccccccccc-c--CcccccccccCCCCCCeEEEEEeCchhhh---hc--ccCCcceE
Q 000302 214 ERAEKLRQRLKNVKRVLVILDNIWKLLNLDAV-G--IPFGDVKKERNDDRSRCTVLLTSRNRDVL---CN--DMNSQKFF 285 (1698)
Q Consensus 214 ~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~~-~--~~~~~~~~~~~~~~~g~kilvTtR~~~v~---~~--~~~~~~~~ 285 (1698)
++...+.+.+++.++..+++|.+........- + .-..++.++....+.--.|-.||-++.-- +. ....-+.+
T Consensus 249 eRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V 328 (786)
T COG0542 249 ERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKV 328 (786)
T ss_pred HHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhcCcee
Confidence 34455555555556999999998765211110 0 00001111111123333456666554221 10 12234577
Q ss_pred EccCCCHHHHHHHHHHHh
Q 000302 286 LIEVLSYEEAWCLFEKIV 303 (1698)
Q Consensus 286 ~l~~L~~~e~~~Lf~~~~ 303 (1698)
.|+.-+.+++...++-..
T Consensus 329 ~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 329 LVDEPSVEDTIAILRGLK 346 (786)
T ss_pred eCCCCCHHHHHHHHHHHH
Confidence 788888888888877655
No 237
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.29 E-value=0.046 Score=56.23 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
.-.++.++|++|.|||||.+.+|...+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 3468999999999999999999987754
No 238
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.26 E-value=0.21 Score=58.76 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=78.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhh---------------------cccCCEEEE-----------------hHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIE---------------------DKLFDKVVF-----------------VERAEK 218 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~~~-----------------~~~~~~ 218 (1698)
.+.+.++|+.|+||||+|..++...-. ..|.|.+.. |+.+..
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 457889999999999999999986531 123443332 223333
Q ss_pred HHHHHH----ccCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeCch-hhhhcccCCcceEEccCCC
Q 000302 219 LRQRLK----NVKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR-DVLCNDMNSQKFFLIEVLS 291 (1698)
Q Consensus 219 l~~~l~----~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~-~v~~~~~~~~~~~~l~~L~ 291 (1698)
+.+.+. .+++-.+|+|++...+ ..+.+...+.+ ...++.+|++|.+. .+..........+.+.+++
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEe-------p~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~ 173 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEE-------PPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPS 173 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHh-------CcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCC
Confidence 444443 1344455667776652 22333332322 22345566666654 3443223345688899999
Q ss_pred HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHH
Q 000302 292 YEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 329 (1698)
Q Consensus 292 ~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 329 (1698)
.+++.+.+.+. |. .. .. + .+..++|-|+.
T Consensus 174 ~~~~~~~L~~~-~~---~~--~~-~--~l~~~~g~p~~ 202 (325)
T PRK08699 174 HEEALAYLRER-GV---AE--PE-E--RLAFHSGAPLF 202 (325)
T ss_pred HHHHHHHHHhc-CC---Cc--HH-H--HHHHhCCChhh
Confidence 99988877654 21 11 11 1 23568898964
No 239
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.19 E-value=0.13 Score=64.19 Aligned_cols=54 Identities=22% Similarity=0.364 Sum_probs=39.7
Q ss_pred ccccchHHHHHHHHHHHhc-----CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 156 EQFDSRMKIFQNIMEVLKD-----TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
.+++--.+-++++..||.+ ...+++.+.|++|+||||.++.+++... |+.+-|.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~ 77 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWI 77 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEec
Confidence 3343334567888888873 2357999999999999999999998753 5555564
No 240
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.23 Score=60.02 Aligned_cols=163 Identities=17% Similarity=0.301 Sum_probs=96.2
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEE-------EEhH-
Q 000302 156 EQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKV-------VFVE- 214 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-------~~~~- 214 (1698)
.++-|.+....++..++.. ....=|-+||++|.|||-||++|++..... |-.+ .||+
T Consensus 511 ~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~N--FisVKGPELlNkYVGE 588 (802)
T KOG0733|consen 511 DDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGAN--FISVKGPELLNKYVGE 588 (802)
T ss_pred hhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCc--eEeecCHHHHHHHhhh
Confidence 3444555555566555541 124567899999999999999999987644 5322 2442
Q ss_pred ---HHHHHHHHHHccCcEEEEEcCccccc-------------ccccccCcccccccccCCCCCCeEEEEEeCchhhhhcc
Q 000302 215 ---RAEKLRQRLKNVKRVLVILDNIWKLL-------------NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCND 278 (1698)
Q Consensus 215 ---~~~~l~~~l~~~k~~LlvlDdv~~~~-------------~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~~ 278 (1698)
.+..+.+|.+..-.|.|.+|.++... -.+++..-+..+ ....|--||-.|-.+++....
T Consensus 589 SErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl-----~~R~gV~viaATNRPDiIDpA 663 (802)
T KOG0733|consen 589 SERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL-----EERRGVYVIAATNRPDIIDPA 663 (802)
T ss_pred HHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc-----ccccceEEEeecCCCcccchh
Confidence 23445566655689999999986541 122222222210 134566677777656554432
Q ss_pred c---CC-cceEEccCCCHHHHHHHHHHHhCC--C--CCCCchHHHHHHHHHHhCCCh
Q 000302 279 M---NS-QKFFLIEVLSYEEAWCLFEKIVGD--S--AKASDFRVIADEIVRRCGGLP 327 (1698)
Q Consensus 279 ~---~~-~~~~~l~~L~~~e~~~Lf~~~~~~--~--~~~~~~~~~~~~i~~~c~GlP 327 (1698)
+ |. ....-|+.-+.+|-..+++..... . ..+-+++++|+. .+|.|.-
T Consensus 664 iLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 664 ILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred hcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 2 22 457778888888888999888752 1 122344444432 3566654
No 241
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.0025 Score=68.55 Aligned_cols=105 Identities=25% Similarity=0.411 Sum_probs=66.1
Q ss_pred CCcccEEEccCccCCCccccccccccceeecCCCCCCccchHhhccccccEecccCcccccccCc-hhhccCccCceecc
Q 000302 552 LISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAP-NVISKLSRLEELYM 630 (1698)
Q Consensus 552 L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~L~~L~~L~l 630 (1698)
+.+.+-|+.-||.+.++..+.++..|++|.||-|+|+.|-. +...++|+.|+|+.| .+.++.. ..+.+|++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 44556677777777777777777778888888777777743 667777777777776 4554432 22567777777777
Q ss_pred cCcccccccccCCCccchhhhCCCCCCCEEE
Q 000302 631 GDSFSQWEKVEGGSNASLVELKGLSKLTTLE 661 (1698)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 661 (1698)
..|..- .....+..-.-|+-|++|++|+
T Consensus 96 ~ENPCc---~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCC---GEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcc---cccchhHHHHHHHHcccchhcc
Confidence 765432 1111122233456667776665
No 242
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.15 Score=63.27 Aligned_cols=84 Identities=21% Similarity=0.397 Sum_probs=61.3
Q ss_pred CcccccchHHHHHHHHHHHhc---------C---CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEE-------EEh-
Q 000302 154 AYEQFDSRMKIFQNIMEVLKD---------T---NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKV-------VFV- 213 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~~---------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-------~~~- 213 (1698)
..+++-|-++.+.+|.+-+.- . +.+=|-+||++|.|||-+|++|+....-. |=-+ .+|
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~--FlSVKGPELLNMYVG 747 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN--FLSVKGPELLNMYVG 747 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee--EEeecCHHHHHHHhc
Confidence 345677899999999887751 1 24568899999999999999999876432 2110 122
Q ss_pred ---HHHHHHHHHHHccCcEEEEEcCcccc
Q 000302 214 ---ERAEKLRQRLKNVKRVLVILDNIWKL 239 (1698)
Q Consensus 214 ---~~~~~l~~~l~~~k~~LlvlDdv~~~ 239 (1698)
....++.++.++.+.|.|.+|.++..
T Consensus 748 qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 748 QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 34566777777789999999998764
No 243
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.061 Score=65.82 Aligned_cols=145 Identities=20% Similarity=0.155 Sum_probs=78.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-------HHHHHHHHHHHc-------cCcEEEEEcCcccc----
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV-------ERAEKLRQRLKN-------VKRVLVILDNIWKL---- 239 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~-------~~~~~l~~~l~~-------~k~~LlvlDdv~~~---- 239 (1698)
.-|-|.|+.|+|||+||+.+++... +.+.-.+.++ ...+.+++.+.. ...-+|||||++-.
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s 510 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS 510 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC
Confidence 5688999999999999999999887 4444455555 334455544431 47889999998543
Q ss_pred ----ccccc----ccCcccccccccCCCCCCeE--EEEEeCchhhhhcc----cCCcceEEccCCCHHHHHHHHHHHhCC
Q 000302 240 ----LNLDA----VGIPFGDVKKERNDDRSRCT--VLLTSRNRDVLCND----MNSQKFFLIEVLSYEEAWCLFEKIVGD 305 (1698)
Q Consensus 240 ----~~~~~----~~~~~~~~~~~~~~~~~g~k--ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 305 (1698)
.+|.. +...+.++.+.. ...+.+ +|.|.....-.... .-.+....+..+...+-.++++.....
T Consensus 511 ~~e~~q~~~~~~rla~flnqvi~~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 511 SNENGQDGVVSERLAAFLNQVIKIY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHH--HccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 11211 111111111111 223444 34443333222111 112446678888887777766665532
Q ss_pred CCCCCchHHHHHHHHHHhCCC
Q 000302 306 SAKASDFRVIADEIVRRCGGL 326 (1698)
Q Consensus 306 ~~~~~~~~~~~~~i~~~c~Gl 326 (1698)
... ........-++.+|+|.
T Consensus 589 ~~~-~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 589 NLS-DITMDDLDFLSVKTEGY 608 (952)
T ss_pred hhh-hhhhHHHHHHHHhcCCc
Confidence 111 11112222377888773
No 244
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.09 E-value=0.013 Score=63.62 Aligned_cols=80 Identities=25% Similarity=0.409 Sum_probs=38.7
Q ss_pred cCCceeEEEecCCCcccCCccccCCCcccEEEccCcc--CC-C-ccccccccccceeecCCCCCCccc--hHhhcccccc
Q 000302 528 GMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQ--VG-D-VAIVGQLKKLEILSFRNSDIQQLP--REIGQLVQLR 601 (1698)
Q Consensus 528 ~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~--l~-~-~~~i~~L~~L~~L~Ls~~~i~~LP--~~i~~L~~L~ 601 (1698)
.+..|..|++.+..++.+- .+..|.+|++|.++.|+ +. . .....++.+|++|++++|+|+.+- ....++.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3444555555554444332 13345566666666663 22 1 222333366666666666554311 1234455555
Q ss_pred EecccCc
Q 000302 602 LLDLRNC 608 (1698)
Q Consensus 602 ~L~L~~~ 608 (1698)
.|++.+|
T Consensus 120 ~Ldl~n~ 126 (260)
T KOG2739|consen 120 SLDLFNC 126 (260)
T ss_pred hhhcccC
Confidence 5555555
No 245
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.03 E-value=0.084 Score=59.06 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhc--CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh---HHHH--------------HHHHHH
Q 000302 163 KIFQNIMEVLKD--TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV---ERAE--------------KLRQRL 223 (1698)
Q Consensus 163 ~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~---~~~~--------------~l~~~l 223 (1698)
..+..+.+...+ .....+.++|.+|+|||+||..+++.....+ ..++++ +... .+.+.+
T Consensus 83 ~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l 160 (244)
T PRK07952 83 NALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIITVADIMSAMKDTFSNSETSEEQLLNDL 160 (244)
T ss_pred HHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh
Confidence 345555555442 2235789999999999999999999876542 333443 1111 222223
Q ss_pred HccCcEEEEEcCcccc
Q 000302 224 KNVKRVLVILDNIWKL 239 (1698)
Q Consensus 224 ~~~k~~LlvlDdv~~~ 239 (1698)
. +.=+|||||+...
T Consensus 161 ~--~~dlLvIDDig~~ 174 (244)
T PRK07952 161 S--NVDLLVIDEIGVQ 174 (244)
T ss_pred c--cCCEEEEeCCCCC
Confidence 2 3448899999665
No 246
>PRK13695 putative NTPase; Provisional
Probab=94.99 E-value=0.07 Score=57.09 Aligned_cols=24 Identities=54% Similarity=0.672 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.|+|.|.+|+|||||++.+++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999987764
No 247
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.98 E-value=0.054 Score=56.06 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
..++.|.|++|+|||||++.+.++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999986
No 248
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.96 E-value=0.053 Score=62.56 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=42.3
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEE--------Eh-HHHHHHHHHHH--------ccCcEEEEEcCccc
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVV--------FV-ERAEKLRQRLK--------NVKRVLVILDNIWK 238 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--------~~-~~~~~l~~~l~--------~~k~~LlvlDdv~~ 238 (1698)
....++|||+.|.|||.+|+.+++..... | .++ |+ +....+++... +++.+.|++||++.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~--~-i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIE--P-IVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCC--e-EEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence 45799999999999999999999987543 2 111 22 22333333332 35789999999875
Q ss_pred c
Q 000302 239 L 239 (1698)
Q Consensus 239 ~ 239 (1698)
.
T Consensus 224 ~ 224 (413)
T PLN00020 224 G 224 (413)
T ss_pred c
Confidence 4
No 249
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.92 E-value=0.17 Score=65.78 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=89.0
Q ss_pred cccccchHHHHHHHHHHH---hcC---------CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEE-------Eh--
Q 000302 155 YEQFDSRMKIFQNIMEVL---KDT---------NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVV-------FV-- 213 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-------~~-- 213 (1698)
...+.|.+..++++.+.+ .+. -.+-|.++|++|+||||+|+.++...... |-.+- |+
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~--f~~is~~~~~~~~~g~ 228 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEMFVGV 228 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC--EEEEehHHhHHhhhcc
Confidence 345667666655554433 221 12348999999999999999999876432 21111 11
Q ss_pred --HHHHHHHHHHHccCcEEEEEcCcccccc------------cccccCcc-cccccccCCCCCCeEEEEEeCchhhhhcc
Q 000302 214 --ERAEKLRQRLKNVKRVLVILDNIWKLLN------------LDAVGIPF-GDVKKERNDDRSRCTVLLTSRNRDVLCND 278 (1698)
Q Consensus 214 --~~~~~l~~~l~~~k~~LlvlDdv~~~~~------------~~~~~~~~-~~~~~~~~~~~~g~kilvTtR~~~v~~~~ 278 (1698)
.....+.........+.|++|+++.... ++.....+ ..+ +.. ....+.-||.||...+.....
T Consensus 229 ~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~m-dg~-~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 229 GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM-DGF-EGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhh-hcc-cCCCCeeEEEecCChhhcCHH
Confidence 1122233333335678999999966411 11110000 000 000 023455566677666543321
Q ss_pred c---C-CcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCCh
Q 000302 279 M---N-SQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLP 327 (1698)
Q Consensus 279 ~---~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 327 (1698)
. + -.+.+.+...+.++-.++++.+.......++. -...+++.+.|.-
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~--d~~~la~~t~G~s 357 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFS 357 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcC--CHHHHHhhCCCCC
Confidence 1 1 24577888888888888888887532222211 1234666666643
No 250
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.86 E-value=0.019 Score=61.86 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=77.7
Q ss_pred ccCCceeEEEecCCCccc-----CCccccCCCcccEEEccCccCCC------------ccccccccccceeecCCCCCC-
Q 000302 527 EGMNELRVVHFTRTCFLS-----LPSSLVCLISLRTLSLEGCQVGD------------VAIVGQLKKLEILSFRNSDIQ- 588 (1698)
Q Consensus 527 ~~l~~LrvL~L~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~l~~------------~~~i~~L~~L~~L~Ls~~~i~- 588 (1698)
..|..+.-+|||||.|.. +-..|.+-.+||.-+++.-.... .+.+-+.++|+..+||+|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 347888888999988752 55567777888888887755321 144566777888888887544
Q ss_pred ccch----HhhccccccEecccCcccccccCchhhccCccCceecccCcccccccccCCCccchhhhCCCCCCCEEEEEe
Q 000302 589 QLPR----EIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHI 664 (1698)
Q Consensus 589 ~LP~----~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~ 664 (1698)
+.|. -|+.-+.|.||.+++| .+..+..+-|++ .|++|-. ....++-+.|+...+..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigk--al~~la~-----------------nKKaa~kp~Le~vicgr 166 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGK--ALFHLAY-----------------NKKAADKPKLEVVICGR 166 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHH--HHHHHHH-----------------HhhhccCCCceEEEecc
Confidence 3443 3455667777777777 555444332321 2333321 11234556788777777
Q ss_pred ccccccchh
Q 000302 665 RDARIMPQD 673 (1698)
Q Consensus 665 ~~~~~~~~~ 673 (1698)
|.....+..
T Consensus 167 NRlengs~~ 175 (388)
T COG5238 167 NRLENGSKE 175 (388)
T ss_pred chhccCcHH
Confidence 776665554
No 251
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.82 E-value=0.032 Score=61.92 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=23.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
++|+|.|-||+||||++..++......
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~ 27 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEM 27 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHC
Confidence 479999999999999999999877643
No 252
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=94.75 E-value=0.087 Score=60.19 Aligned_cols=138 Identities=19% Similarity=0.283 Sum_probs=82.0
Q ss_pred ccccchHHHHHHHHHHHhcCC---ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-------------------
Q 000302 156 EQFDSRMKIFQNIMEVLKDTN---VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV------------------- 213 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~------------------- 213 (1698)
..|.+|+.++..+...+.+.. ...|-|+|-+|.|||.+++++.+..... .+|+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHHh
Confidence 467899999999999988443 3456899999999999999999887432 2444
Q ss_pred -----------H-------HHHHHHH--HHH-ccCcEEEEEcCcccccccccccCc----ccccccccCCCCCCeEEEEE
Q 000302 214 -----------E-------RAEKLRQ--RLK-NVKRVLVILDNIWKLLNLDAVGIP----FGDVKKERNDDRSRCTVLLT 268 (1698)
Q Consensus 214 -----------~-------~~~~l~~--~l~-~~k~~LlvlDdv~~~~~~~~~~~~----~~~~~~~~~~~~~g~kilvT 268 (1698)
+ ....+.+ ... .++.++||||+++...+.+.+..+ +..++ ..+...|+..
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~-----~~~~i~iils 155 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELL-----NEPTIVIILS 155 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHh-----CCCceEEEEe
Confidence 0 0111111 111 146899999999887665554321 11111 2233333333
Q ss_pred eCc-hhhhhcccCCcc--eEEccCCCHHHHHHHHHHHh
Q 000302 269 SRN-RDVLCNDMNSQK--FFLIEVLSYEEAWCLFEKIV 303 (1698)
Q Consensus 269 tR~-~~v~~~~~~~~~--~~~l~~L~~~e~~~Lf~~~~ 303 (1698)
.-. +..-...+|... ++....-+.+|...++.+.-
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 222 222111245433 45567778888888776643
No 253
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.72 E-value=0.061 Score=72.43 Aligned_cols=84 Identities=21% Similarity=0.391 Sum_probs=55.3
Q ss_pred ccccchHHHHHHHHHHHhcC---------CceEEEEEcCCCchHHHHHHHHHHHHhhcc-c---CCEEEEh---------
Q 000302 156 EQFDSRMKIFQNIMEVLKDT---------NVGMIGVYGVNGVGKTTLVKQIAMQVIEDK-L---FDKVVFV--------- 213 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~---F~~~~~~--------- 213 (1698)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.++....... . |+..-+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~ 644 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLI 644 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhc
Confidence 35789999999999988621 135788999999999999999998653211 1 1111111
Q ss_pred ---------HHHHHHHHHHHccCcEEEEEcCcccc
Q 000302 214 ---------ERAEKLRQRLKNVKRVLVILDNIWKL 239 (1698)
Q Consensus 214 ---------~~~~~l~~~l~~~k~~LlvlDdv~~~ 239 (1698)
+....+...+++....+|+||++...
T Consensus 645 g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 645 GAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred CCCCCccCcccccHHHHHHHcCCCcEEEEeccccC
Confidence 01123444555445569999999765
No 254
>PRK06547 hypothetical protein; Provisional
Probab=94.66 E-value=0.046 Score=57.81 Aligned_cols=36 Identities=28% Similarity=0.230 Sum_probs=29.1
Q ss_pred HHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 167 NIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 167 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.+...+......+|+|.|++|+||||+|+.+++...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445566788999999999999999999998643
No 255
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.63 E-value=0.086 Score=57.03 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=30.4
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
+..+|.++||+|+||||+.|.++.+...++.-..++-.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNL 55 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINL 55 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeC
Confidence 34688999999999999999999988877554455543
No 256
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.62 E-value=0.091 Score=70.58 Aligned_cols=84 Identities=19% Similarity=0.308 Sum_probs=55.4
Q ss_pred ccccchHHHHHHHHHHHhc-------CC--ceEEEEEcCCCchHHHHHHHHHHHHhhc-c---cCCEEEEh---------
Q 000302 156 EQFDSRMKIFQNIMEVLKD-------TN--VGMIGVYGVNGVGKTTLVKQIAMQVIED-K---LFDKVVFV--------- 213 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~-------~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~---~F~~~~~~--------- 213 (1698)
..++|.+..++.+.+++.. ++ ...+.++|+.|+|||+||+.+++..-.. . .||..-+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 4578999999999888861 11 3456789999999999999999865211 0 11111111
Q ss_pred ---------HHHHHHHHHHHccCcEEEEEcCcccc
Q 000302 214 ---------ERAEKLRQRLKNVKRVLVILDNIWKL 239 (1698)
Q Consensus 214 ---------~~~~~l~~~l~~~k~~LlvlDdv~~~ 239 (1698)
+....+.+.+++...-++++|++...
T Consensus 589 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred CCCCcccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 11234666666444568999999765
No 257
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.61 E-value=0.062 Score=70.13 Aligned_cols=83 Identities=23% Similarity=0.285 Sum_probs=55.1
Q ss_pred cccchHHHHHHHHHHHhc-------C--CceEEEEEcCCCchHHHHHHHHHHHHhhc-ccCCEEEEh-------------
Q 000302 157 QFDSRMKIFQNIMEVLKD-------T--NVGMIGVYGVNGVGKTTLVKQIAMQVIED-KLFDKVVFV------------- 213 (1698)
Q Consensus 157 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~~------------- 213 (1698)
.++|.+..++.+.+++.. . ....+-++|+.|+|||++|+.++...... -.|++.-+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~ 538 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPP 538 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCC
Confidence 468999999999888871 1 23578999999999999999998876311 012222111
Q ss_pred -----HHHHHHHHHHHccCcEEEEEcCcccc
Q 000302 214 -----ERAEKLRQRLKNVKRVLVILDNIWKL 239 (1698)
Q Consensus 214 -----~~~~~l~~~l~~~k~~LlvlDdv~~~ 239 (1698)
+....+.+.+++....+|+||++...
T Consensus 539 gyvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 539 GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred CcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 01123444555445679999999876
No 258
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.60 E-value=0.28 Score=55.58 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcC---CceEEEEEcCCCchHHHHHHHHHHHHhhcccCC----EEEEh----------------------
Q 000302 163 KIFQNIMEVLKDT---NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD----KVVFV---------------------- 213 (1698)
Q Consensus 163 ~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~~~---------------------- 213 (1698)
+.++.+.+.+..+ ..+-+.|||.+|.|||++++.+.........-+ .|+.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 3445555555532 356799999999999999999998654321111 23333
Q ss_pred ----HH----HHHHHHHHHccCcEEEEEcCccccc-----cccccc---CcccccccccCCCCCCeEEEEEeCchhhhhc
Q 000302 214 ----ER----AEKLRQRLKNVKRVLVILDNIWKLL-----NLDAVG---IPFGDVKKERNDDRSRCTVLLTSRNRDVLCN 277 (1698)
Q Consensus 214 ----~~----~~~l~~~l~~~k~~LlvlDdv~~~~-----~~~~~~---~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~ 277 (1698)
+. ...+...++.-+--+||+|++.+.. +-..+. ..+.+ .-.-+-|.|-|+...-+-
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N-------eL~ipiV~vGt~~A~~al- 195 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN-------ELQIPIVGVGTREAYRAL- 195 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh-------ccCCCeEEeccHHHHHHh-
Confidence 11 1222333343355689999997751 111111 11222 223345566665543322
Q ss_pred ccC-----CcceEEccCCCHHHHH-HHHHHHhC----CCCCCCchHHHHHHHHHHhCCChHHHH
Q 000302 278 DMN-----SQKFFLIEVLSYEEAW-CLFEKIVG----DSAKASDFRVIADEIVRRCGGLPVAIK 331 (1698)
Q Consensus 278 ~~~-----~~~~~~l~~L~~~e~~-~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~GlPlai~ 331 (1698)
..+ ....+.++....++-+ .|+..... ....+-...++++.|...++|+.--+.
T Consensus 196 ~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 196 RTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred ccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 111 2346666666655444 44333321 122223346789999999999874433
No 259
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.59 E-value=0.44 Score=57.56 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
...+|.++|+.|+||||+|..++...+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999987653
No 260
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.58 E-value=0.17 Score=49.28 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=37.5
Q ss_pred ccccchHHHHHHHHHHHh-------cCCceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 156 EQFDSRMKIFQNIMEVLK-------DTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
..++|..-..+.+++++. ..+.-|++.+|..|+|||.+|+.+++..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 356788888888888776 2345699999999999999999999874
No 261
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.57 E-value=0.12 Score=60.67 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=29.8
Q ss_pred HHHHHHHhc-CCceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 166 QNIMEVLKD-TNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 166 ~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
.++++.+.. +.-..+.|+|..|+|||||++++++....
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 346777662 34457799999999999999999987754
No 262
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.47 E-value=0.052 Score=66.33 Aligned_cols=48 Identities=17% Similarity=0.363 Sum_probs=41.4
Q ss_pred cccccchHHHHHHHHHHHh------cCCceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 155 YEQFDSRMKIFQNIMEVLK------DTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
+.+++|.++.+++|++.|. +...+++.++|+.|+||||||+.+++-.+
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 3468899999999999984 45568999999999999999999998654
No 263
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.45 E-value=0.85 Score=53.75 Aligned_cols=37 Identities=35% Similarity=0.482 Sum_probs=25.5
Q ss_pred HHHHHHHHhcC----CceEEEEEcCCCchHH-HHHHHHHHHH
Q 000302 165 FQNIMEVLKDT----NVGMIGVYGVNGVGKT-TLVKQIAMQV 201 (1698)
Q Consensus 165 ~~~l~~~l~~~----~~~vi~I~G~gGiGKT-tLa~~v~~~~ 201 (1698)
...+..++.++ +.++|+++|+.||||| |||+.++.-.
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 33444444443 3689999999999999 5666666555
No 264
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.41 E-value=0.026 Score=54.52 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=36.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhcc--cCCEEEEh-HHHHHHHHHHHccCcEEEEEcCccccc
Q 000302 180 IGVYGVNGVGKTTLVKQIAMQVIEDK--LFDKVVFV-ERAEKLRQRLKNVKRVLVILDNIWKLL 240 (1698)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~~~-~~~~~l~~~l~~~k~~LlvlDdv~~~~ 240 (1698)
|-|+|++|+|||++|+.++.+....- .....+|. ........--. ++ -.+|+||++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~-~q-~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQ-GQ-PVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccC-CC-cEEEEeecCccc
Confidence 46899999999999999998775432 12223332 22333333332 33 457889987763
No 265
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.40 E-value=0.087 Score=70.61 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=37.6
Q ss_pred ccccchHHHHHHHHHHHhc-------CC--ceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 156 EQFDSRMKIFQNIMEVLKD-------TN--VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~-------~~--~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
..++|.+..++.+...+.. ++ ..++.++|+.|+|||++|+.+++...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3478999999998888762 11 24788999999999999999997653
No 266
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.39 E-value=0.016 Score=37.43 Aligned_cols=21 Identities=19% Similarity=0.525 Sum_probs=13.1
Q ss_pred ccceeecCCCCCCccchHhhc
Q 000302 576 KLEILSFRNSDIQQLPREIGQ 596 (1698)
Q Consensus 576 ~L~~L~Ls~~~i~~LP~~i~~ 596 (1698)
+|++|||++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466666666666666665544
No 267
>PRK07667 uridine kinase; Provisional
Probab=94.37 E-value=0.062 Score=58.43 Aligned_cols=38 Identities=24% Similarity=0.494 Sum_probs=30.0
Q ss_pred HHHHHHHh--cCCceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 166 QNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 166 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
+.|.+.+. .++..+|+|.|.+|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45555555 345579999999999999999999987753
No 268
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.35 E-value=0.044 Score=63.75 Aligned_cols=27 Identities=37% Similarity=0.620 Sum_probs=23.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
+.|+|+|-||+||||+|..++.....+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 479999999999999999999876543
No 269
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.34 E-value=1 Score=53.88 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhc---CCceEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 162 MKIFQNIMEVLKD---TNVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 162 ~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
+...+.+.+.+.+ ....+|+|.|.=|+||||+.+++.+..+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4455667777764 467899999999999999999999887755
No 270
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.34 E-value=0.05 Score=63.33 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=23.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
++|+|+|-||+||||+|..++......
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~ 28 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAES 28 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence 578999999999999999999877543
No 271
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.32 E-value=0.094 Score=54.50 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=23.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
+.|.+.|.+|+||||+|+++++..+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467899999999999999999877654
No 272
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.21 E-value=0.073 Score=59.77 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=25.7
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
....+|+|.|+.|+|||||++.++...+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45789999999999999999999987654
No 273
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.20 E-value=0.06 Score=62.92 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=26.5
Q ss_pred cCCceEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 174 DTNVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 174 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
+.+.++|++.|-|||||||.|..++.-....
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~ 33 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEM 33 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHC
Confidence 4567999999999999999999998876543
No 274
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.11 Score=66.42 Aligned_cols=46 Identities=24% Similarity=0.422 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHHHh-------cC--CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 156 EQFDSRMKIFQNIMEVLK-------DT--NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
..++|.+..++.+.+++. ++ ...+....||.|||||.||++++...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L 545 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL 545 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh
Confidence 457899999999999987 22 34678889999999999999999865
No 275
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.11 E-value=0.041 Score=60.02 Aligned_cols=26 Identities=42% Similarity=0.655 Sum_probs=23.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
||+|.|++|+||||+|+.++......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 79999999999999999999988643
No 276
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.07 E-value=0.089 Score=57.45 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.+|.|+|+.|+||||++..+.....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4789999999999999998877654
No 277
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=94.02 E-value=0.059 Score=62.54 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=22.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
++|+|+|-|||||||+|..++.-...
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~ 27 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALST 27 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999987653
No 278
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=94.00 E-value=0.061 Score=62.43 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=22.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
++|+|+|-||+||||+|..++.-...
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~ 27 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAE 27 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 58999999999999999999987653
No 279
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.95 E-value=0.12 Score=56.53 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
-..++|.|..|+|||+|++++.+...
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~ 40 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD 40 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEEcCcccccchhhHHHHhccc
Confidence 36899999999999999999998874
No 280
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.88 E-value=0.12 Score=62.93 Aligned_cols=37 Identities=30% Similarity=0.537 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
.-..++|.|.+|+|||||+.+++...... +-+.++++
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~ 178 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFA 178 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEE
Confidence 34689999999999999999999877643 56777776
No 281
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.81 E-value=0.14 Score=55.39 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
+++|.++|+.|+||||.+..++...+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 3689999999999999888888877654
No 282
>PRK04132 replication factor C small subunit; Provisional
Probab=93.80 E-value=0.53 Score=61.78 Aligned_cols=140 Identities=13% Similarity=0.065 Sum_probs=84.4
Q ss_pred CCCchHHHHHHHHHHHHhhcccCC-EEEEh-----HHHHHHHHHHHc---------cCcEEEEEcCccccc--ccccccC
Q 000302 185 VNGVGKTTLVKQIAMQVIEDKLFD-KVVFV-----ERAEKLRQRLKN---------VKRVLVILDNIWKLL--NLDAVGI 247 (1698)
Q Consensus 185 ~gGiGKTtLa~~v~~~~~~~~~F~-~~~~~-----~~~~~l~~~l~~---------~k~~LlvlDdv~~~~--~~~~~~~ 247 (1698)
|.++||||+|..++++.--+ .++ .++-+ ...+.+++.+++ .+.-++|+|+++... ..+.+..
T Consensus 574 Ph~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk 652 (846)
T PRK04132 574 PTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRR 652 (846)
T ss_pred CCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHH
Confidence 77999999999999885221 111 12222 123444444321 145799999998873 4444444
Q ss_pred cccccccccCCCCCCeEEEEEeCc-hhhhhcccCCcceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCC
Q 000302 248 PFGDVKKERNDDRSRCTVLLTSRN-RDVLCNDMNSQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGL 326 (1698)
Q Consensus 248 ~~~~~~~~~~~~~~g~kilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 326 (1698)
.+-. ....+++|++|.+ ..+..........+++.++++++-...+...+..+... --++....|++.++|-
T Consensus 653 ~lEe-------p~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~~e~L~~Ia~~s~GD 724 (846)
T PRK04132 653 TMEM-------FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGD 724 (846)
T ss_pred HhhC-------CCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCC
Confidence 3332 2345666655544 44433223346789999999999888888776321111 1145678999999998
Q ss_pred hHHHHHH
Q 000302 327 PVAIKTI 333 (1698)
Q Consensus 327 Plai~~~ 333 (1698)
+..+..+
T Consensus 725 lR~AIn~ 731 (846)
T PRK04132 725 MRRAINI 731 (846)
T ss_pred HHHHHHH
Confidence 8554433
No 283
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.79 E-value=0.15 Score=57.21 Aligned_cols=38 Identities=26% Similarity=0.235 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHh--hcccCCEEEEh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI--EDKLFDKVVFV 213 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~~~ 213 (1698)
.-..++|.|-.|+|||+|+.+++++.. .+..-+.++++
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~ 107 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFA 107 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEE
Confidence 346889999999999999999988754 11224666666
No 284
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.75 E-value=0.05 Score=54.86 Aligned_cols=22 Identities=45% Similarity=0.838 Sum_probs=20.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 000302 180 IGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
|+|.|+.|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999883
No 285
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.73 E-value=0.15 Score=58.07 Aligned_cols=61 Identities=28% Similarity=0.328 Sum_probs=32.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh--------------HHHHHHHHHHH----c--cCcEEEEEcCcc
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV--------------ERAEKLRQRLK----N--VKRVLVILDNIW 237 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~--------------~~~~~l~~~l~----~--~k~~LlvlDdv~ 237 (1698)
+.|.|+|.+|+||||+|+++....... ..+.++.- .....++..++ + .++.++|+||.-
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~-~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~n 80 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK-GKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNN 80 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT-T--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S--
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc-CCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCc
Confidence 468999999999999999999987653 33433332 01111222221 1 467899999987
Q ss_pred cc
Q 000302 238 KL 239 (1698)
Q Consensus 238 ~~ 239 (1698)
..
T Consensus 81 Yi 82 (270)
T PF08433_consen 81 YI 82 (270)
T ss_dssp -S
T ss_pred hH
Confidence 65
No 286
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.19 Score=53.90 Aligned_cols=83 Identities=22% Similarity=0.277 Sum_probs=54.2
Q ss_pred cccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh--------
Q 000302 155 YEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV-------- 213 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~-------- 213 (1698)
+.++-|-.+.++++.+...- +..+=|-.+|++|.|||-+|++|+++... -|-.++=.
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda--cfirvigselvqkyvg 253 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA--CFIRVIGSELVQKYVG 253 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc--eEEeehhHHHHHHHhh
Confidence 34556777888888776641 23456889999999999999999997542 24333322
Q ss_pred HHHHH---HHHHHHccCcEEEEEcCcccc
Q 000302 214 ERAEK---LRQRLKNVKRVLVILDNIWKL 239 (1698)
Q Consensus 214 ~~~~~---l~~~l~~~k~~LlvlDdv~~~ 239 (1698)
+.+.. +.+..+..|-|+|.+|.++..
T Consensus 254 egarmvrelf~martkkaciiffdeidai 282 (435)
T KOG0729|consen 254 EGARMVRELFEMARTKKACIIFFDEIDAI 282 (435)
T ss_pred hhHHHHHHHHHHhcccceEEEEeeccccc
Confidence 22333 333333357788999987543
No 287
>PTZ00301 uridine kinase; Provisional
Probab=93.67 E-value=0.063 Score=58.71 Aligned_cols=26 Identities=31% Similarity=0.652 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
..+|||.|.+|+||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 47999999999999999999988764
No 288
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.63 E-value=0.039 Score=60.00 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=55.5
Q ss_pred hccCCceeEEEecCC--Ccc-cCCccccCCCcccEEEccCccCCCc---cccccccccceeecCCCCCCccch----Hhh
Q 000302 526 FEGMNELRVVHFTRT--CFL-SLPSSLVCLISLRTLSLEGCQVGDV---AIVGQLKKLEILSFRNSDIQQLPR----EIG 595 (1698)
Q Consensus 526 f~~l~~LrvL~L~~~--~i~-~lp~~i~~L~~Lr~L~L~~~~l~~~---~~i~~L~~L~~L~Ls~~~i~~LP~----~i~ 595 (1698)
|..+.+|+.|.++.| .+. .++-...++.+|++|+|++|++..+ .....+.+|..||+.+|....+-+ -+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 456778888888888 333 3554455668999999999998865 455677788899999887665421 133
Q ss_pred ccccccEecccC
Q 000302 596 QLVQLRLLDLRN 607 (1698)
Q Consensus 596 ~L~~L~~L~L~~ 607 (1698)
-+++|.+||-..
T Consensus 141 ll~~L~~LD~~d 152 (260)
T KOG2739|consen 141 LLPSLKYLDGCD 152 (260)
T ss_pred Hhhhhccccccc
Confidence 445555554433
No 289
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.62 E-value=0.03 Score=57.23 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=58.0
Q ss_pred cchHHHHHHHHHHHh--cCCceEEEEEcCCCchHHHHHHHHHHHHhhc-ccCCEEEEhHHHHHHHHHHHccCcEEEEEcC
Q 000302 159 DSRMKIFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIED-KLFDKVVFVERAEKLRQRLKNVKRVLVILDN 235 (1698)
Q Consensus 159 ~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~~~~~~~l~~~l~~~k~~LlvlDd 235 (1698)
+|+-..++++.+.+. .....-|.|+|..|+||+++|+.++...... ..|..+-..... .+.+.+.+.--++++|
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~---~~~l~~a~~gtL~l~~ 77 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP---AELLEQAKGGTLYLKN 77 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---HHHHHHCTTSEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---HHHHHHcCCCEEEECC
Confidence 355566666666665 2334567899999999999999999865432 223222111111 2223323555677899
Q ss_pred ccccc--ccccccCcccccccccCCCCCCeEEEEEeCch
Q 000302 236 IWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR 272 (1698)
Q Consensus 236 v~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~ 272 (1698)
+..-. ....+...+.. ......|+|.||+..
T Consensus 78 i~~L~~~~Q~~L~~~l~~------~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 78 IDRLSPEAQRRLLDLLKR------QERSNVRLIASSSQD 110 (138)
T ss_dssp GCCS-HHHHHHHHHHHHH------CTTTTSEEEEEECC-
T ss_pred hHHCCHHHHHHHHHHHHh------cCCCCeEEEEEeCCC
Confidence 87652 22223222221 024667999999765
No 290
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.61 E-value=0.052 Score=57.33 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
..+|+|-||-|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 291
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.60 E-value=0.18 Score=53.34 Aligned_cols=25 Identities=44% Similarity=0.696 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
++.|+|++|+||||+++.++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999887653
No 292
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=93.56 E-value=0.08 Score=61.28 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
+|++.|-||+||||+|..++.....
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~ 26 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAK 26 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHh
Confidence 5888999999999999999886653
No 293
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.55 E-value=0.19 Score=53.94 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
...+|.+.|+.|+||||+|+.++...... +..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 34699999999999999999999987643 4445554
No 294
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.48 E-value=0.064 Score=46.93 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 295
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.45 E-value=0.16 Score=58.81 Aligned_cols=29 Identities=34% Similarity=0.594 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
+.++|+|+|++|+||||++..++.....+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34699999999999999999999877543
No 296
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.13 Score=59.53 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
-.+|.|-|-+|+|||||.-+++.+...++ .+.+|
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYV 126 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYV 126 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEE
Confidence 36999999999999999999999987653 77888
No 297
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.41 E-value=0.16 Score=59.58 Aligned_cols=27 Identities=41% Similarity=0.550 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
+.++|+++|++|+||||++..++....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357999999999999999999987654
No 298
>PRK08233 hypothetical protein; Provisional
Probab=93.40 E-value=0.067 Score=57.84 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
..+|+|.|++|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4799999999999999999999865
No 299
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.38 E-value=0.12 Score=55.74 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=27.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
.++|.|+|+.|+|||||++.+...... .|..+++.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~--~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD--KFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT--TEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc--ccccceee
Confidence 478999999999999999999987643 35444444
No 300
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.38 E-value=0.17 Score=57.41 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhccc----CCEEEEh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKL----FDKVVFV 213 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~~~ 213 (1698)
-.++.|+|.+|+|||+||.+++-....... -..++|+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi 59 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYI 59 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEE
Confidence 479999999999999999999865432221 3577887
No 301
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.34 E-value=1.1 Score=54.92 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
...+|.++|..|+||||+|..++...+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4579999999999999999999987764
No 302
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.30 E-value=0.077 Score=58.76 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+..+|+|.|.+|+||||||+.++...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999875
No 303
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.27 E-value=0.076 Score=58.65 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
...+|+|+|++|+||||||+.++....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999997653
No 304
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=93.25 E-value=0.095 Score=60.92 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=22.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
++|+|+|-|||||||+|..++.-..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La 27 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMA 27 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 6899999999999999999988765
No 305
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.24 E-value=0.063 Score=56.98 Aligned_cols=57 Identities=25% Similarity=0.322 Sum_probs=36.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh--------HHHHHHHHHHHccCcEEEEEcCcccc
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV--------ERAEKLRQRLKNVKRVLVILDNIWKL 239 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~--------~~~~~l~~~l~~~k~~LlvlDdv~~~ 239 (1698)
.|.|.|++|+||||+|+.+++.... -|.+.-.|. ....+++..+.+++ +|-|++-..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i-~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~---lv~d~i~~~ 66 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL-PHLDTGDILRAAIAERTELGEEIKKYIDKGE---LVPDEIVNG 66 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-cEEcHhHHhHhhhccCChHHHHHHHHHHcCC---ccchHHHHH
Confidence 5789999999999999999998532 233322222 33445555555444 666665444
No 306
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.24 E-value=0.11 Score=57.20 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQ 200 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~ 200 (1698)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 489999999999999999999853
No 307
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.99 Score=48.23 Aligned_cols=169 Identities=17% Similarity=0.166 Sum_probs=89.1
Q ss_pred ccchHHHHHHHHHHHh-------------cCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHHHH-------
Q 000302 158 FDSRMKIFQNIMEVLK-------------DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVERAE------- 217 (1698)
Q Consensus 158 ~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~~~------- 217 (1698)
+-|-++.+++|.+.+. -.+.+=+.++|++|.|||-||+.||+..... | +-|...+
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~--f---irvsgselvqk~ig 223 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--F---IRVSGSELVQKYIG 223 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceE--E---EEechHHHHHHHhh
Confidence 4456777777777664 1256678899999999999999999864321 1 1121112
Q ss_pred -------HHHHHHHccCcEEEEEcCcccccc------------c----ccccCcccccccccCCCCCCeEEEEEeCchhh
Q 000302 218 -------KLRQRLKNVKRVLVILDNIWKLLN------------L----DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDV 274 (1698)
Q Consensus 218 -------~l~~~l~~~k~~LlvlDdv~~~~~------------~----~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v 274 (1698)
.+.-..++.-.-.|..|.++.... . -++...+.. .. ..+.-|||+.|-.-++
T Consensus 224 egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg----fe-atknikvimatnridi 298 (404)
T KOG0728|consen 224 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG----FE-ATKNIKVIMATNRIDI 298 (404)
T ss_pred hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc----cc-cccceEEEEecccccc
Confidence 222222334677888888865410 0 000001110 00 3466788887755554
Q ss_pred hhc---ccC-CcceEEccCCCHHHHHHHHHHHhC--CCCCCCchHHHHHHHHHHhCCChHHHHHHHHH
Q 000302 275 LCN---DMN-SQKFFLIEVLSYEEAWCLFEKIVG--DSAKASDFRVIADEIVRRCGGLPVAIKTIANA 336 (1698)
Q Consensus 275 ~~~---~~~-~~~~~~l~~L~~~e~~~Lf~~~~~--~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~ 336 (1698)
... ..+ -...++..+-+++.-.++++-+.. .-...-+++.+|.++....|.--.++-+-|++
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm 366 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGM 366 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhH
Confidence 432 112 245677777777776677665542 11122344454444433333223334444444
No 308
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.21 E-value=0.27 Score=54.49 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
-+++-|+|++|+|||++|.+++...... -..++|+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi 46 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYI 46 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEE
Confidence 4799999999999999999998876533 4677787
No 309
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.21 E-value=0.1 Score=60.96 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
++|.+.|-|||||||+|...+-....+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~ 28 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR 28 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC
Confidence 688999999999999999998876543
No 310
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.20 E-value=0.079 Score=56.91 Aligned_cols=27 Identities=41% Similarity=0.581 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
++.+|||.|.+|+||||+|+.++....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999999998875
No 311
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.18 E-value=0.12 Score=62.65 Aligned_cols=51 Identities=10% Similarity=0.230 Sum_probs=40.6
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCC
Q 000302 156 EQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD 208 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 208 (1698)
..|+||++.++.+...+..++ -|-|.|++|+|||++|+.++........|.
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 458999999999998887653 567999999999999999998654333344
No 312
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.18 E-value=0.094 Score=58.73 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEcCCCchHHHHHHHHHHHHhhcc
Q 000302 182 VYGVNGVGKTTLVKQIAMQVIEDK 205 (1698)
Q Consensus 182 I~G~gGiGKTtLa~~v~~~~~~~~ 205 (1698)
|+||+|+||||+++.+.+.....+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~ 24 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG 24 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc
Confidence 689999999999999999886553
No 313
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.18 E-value=0.53 Score=56.37 Aligned_cols=129 Identities=16% Similarity=0.148 Sum_probs=76.2
Q ss_pred ccchHHHHHHHHHHHh-cCCce-EEEEEcCCCchHHHHHHHHHHHHhhcc--------------------cCCEEEEh--
Q 000302 158 FDSRMKIFQNIMEVLK-DTNVG-MIGVYGVNGVGKTTLVKQIAMQVIEDK--------------------LFDKVVFV-- 213 (1698)
Q Consensus 158 ~~gr~~~~~~l~~~l~-~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~~~-- 213 (1698)
++|.+....++..+.. .++.+ .+-++|+.|+||||+|..+++..--.. |+|..-.-
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 5667777888888877 33344 599999999999999999998765221 23333222
Q ss_pred ---H---HHHHHHHHHH---c----cCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEeCc-hhhhhc
Q 000302 214 ---E---RAEKLRQRLK---N----VKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTSRN-RDVLCN 277 (1698)
Q Consensus 214 ---~---~~~~l~~~l~---~----~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~-~~v~~~ 277 (1698)
. ..+.+++... . ++.-++|+|+++... .-+.+...+-. ....+.+|++|.. ..+...
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEe-------p~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEE-------PPKNTRFILITNDPSKILPT 155 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhcc-------CCCCeEEEEEcCChhhccch
Confidence 1 2233333222 1 467799999998873 23333333333 4456777777763 333331
Q ss_pred ccCCcceEEccCCCHH
Q 000302 278 DMNSQKFFLIEVLSYE 293 (1698)
Q Consensus 278 ~~~~~~~~~l~~L~~~ 293 (1698)
.......+++.+.+..
T Consensus 156 I~SRc~~i~f~~~~~~ 171 (325)
T COG0470 156 IRSRCQRIRFKPPSRL 171 (325)
T ss_pred hhhcceeeecCCchHH
Confidence 2233456677764333
No 314
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.15 E-value=0.26 Score=54.69 Aligned_cols=83 Identities=22% Similarity=0.294 Sum_probs=57.6
Q ss_pred cccchHHHHHHHHHHHh----c---CCceEEEEEcCCCchHHHHHHHHHHHHhhcc-------------cCCEEEEh---
Q 000302 157 QFDSRMKIFQNIMEVLK----D---TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK-------------LFDKVVFV--- 213 (1698)
Q Consensus 157 ~~~gr~~~~~~l~~~l~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------~F~~~~~~--- 213 (1698)
.++|..-..+.|+..+. + .+.=+++.+|..|+||.-.|+.+++...... ||..--.+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y 162 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY 162 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH
Confidence 46788888888888887 2 2456999999999999999999998654321 22222222
Q ss_pred --HHHHHHHHHHHccCcEEEEEcCcccc
Q 000302 214 --ERAEKLRQRLKNVKRVLVILDNIWKL 239 (1698)
Q Consensus 214 --~~~~~l~~~l~~~k~~LlvlDdv~~~ 239 (1698)
+...+++..+..-+|-|+|+|+++..
T Consensus 163 k~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 163 KEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 22334444444458999999999876
No 315
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.13 E-value=0.2 Score=60.62 Aligned_cols=37 Identities=27% Similarity=0.517 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
.-..++|.|.+|+|||+|+.++...... .+-+.++++
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~ 173 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFC 173 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEE
Confidence 3468999999999999999999887642 234677776
No 316
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.11 E-value=0.18 Score=61.10 Aligned_cols=28 Identities=36% Similarity=0.712 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
.-..++|.|..|+|||||+.+++.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~ 170 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK 170 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh
Confidence 3468999999999999999998876654
No 317
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.46 Score=59.26 Aligned_cols=172 Identities=18% Similarity=0.172 Sum_probs=90.5
Q ss_pred CcccccchHHHHHHHHH---HHhcCC---------ceEEEEEcCCCchHHHHHHHHHHHHhhcccCC----EE-EEh---
Q 000302 154 AYEQFDSRMKIFQNIME---VLKDTN---------VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFD----KV-VFV--- 213 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~---~l~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~-~~~--- 213 (1698)
.+.+..|.++.++++.+ .|.++. ++=+..+|++|.|||.||++++....+--.+- .+ ++|
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvG 227 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVG 227 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCC
Confidence 34566788877665554 555432 35688999999999999999999887641111 11 122
Q ss_pred -HHHHHHHHHHHccCcEEEEEcCccccc------------ccccccCc-ccccccccCCCCCCeEEEEEeCchhhhhc--
Q 000302 214 -ERAEKLRQRLKNVKRVLVILDNIWKLL------------NLDAVGIP-FGDVKKERNDDRSRCTVLLTSRNRDVLCN-- 277 (1698)
Q Consensus 214 -~~~~~l~~~l~~~k~~LlvlDdv~~~~------------~~~~~~~~-~~~~~~~~~~~~~g~kilvTtR~~~v~~~-- 277 (1698)
.+...+...-++.-++.|++|.++... ++++-... +-.+. .. ..+.|-.|+..|-.++|...
T Consensus 228 AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD-GF-~~~~gviviaaTNRpdVlD~AL 305 (596)
T COG0465 228 ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD-GF-GGNEGVIVIAATNRPDVLDPAL 305 (596)
T ss_pred cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhc-cC-CCCCceEEEecCCCcccchHhh
Confidence 344445555444567999999986641 12211111 11100 00 01234445555544555432
Q ss_pred -ccCC-cceEEccCCCHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhCCChHH
Q 000302 278 -DMNS-QKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVA 329 (1698)
Q Consensus 278 -~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 329 (1698)
.-+. .+.+.++.-+-..-.+.++-++....-.++ .+ ...|++.+-|.--|
T Consensus 306 lRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~-Vd-l~~iAr~tpGfsGA 357 (596)
T COG0465 306 LRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED-VD-LKKIARGTPGFSGA 357 (596)
T ss_pred cCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc-CC-HHHHhhhCCCcccc
Confidence 1121 334555555555566666655532221111 11 12277777776544
No 318
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.06 E-value=0.2 Score=61.11 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=30.2
Q ss_pred HHHHHhc-CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 168 IMEVLKD-TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 168 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
+++.+.. ..-....|+|+.|+|||||++.+++.... ++-++.++|
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~iv 451 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMV 451 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEE
Confidence 4444441 23457899999999999999999986643 233444333
No 319
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=93.04 E-value=0.12 Score=60.31 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
+.++|+|+|-||+||||.+..++.....
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~ 30 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVE 30 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHH
Confidence 3478999999999999999998876653
No 320
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.03 E-value=0.14 Score=51.99 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
++|.|+|..|+|||||++.+.+....+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR 27 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc
Confidence 489999999999999999999987643
No 321
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=93.02 E-value=0.12 Score=60.06 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=23.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
++|+|.|-||+||||+|..++.....
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~ 28 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAK 28 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68899999999999999999987653
No 322
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.00 E-value=0.5 Score=53.82 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=30.2
Q ss_pred HHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 167 NIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 167 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
+..+.+.+.++.+|.|.|..|+|||||+..+.+....
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3444555667899999999999999999999988653
No 323
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.99 E-value=0.28 Score=50.52 Aligned_cols=26 Identities=42% Similarity=0.643 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
.+|-|++..|.||||+|...+-+...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~ 28 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALG 28 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999998876643
No 324
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.97 E-value=0.051 Score=35.14 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=16.1
Q ss_pred ceeEEEecCCCcccCCccccCC
Q 000302 531 ELRVVHFTRTCFLSLPSSLVCL 552 (1698)
Q Consensus 531 ~LrvL~L~~~~i~~lp~~i~~L 552 (1698)
+|++|||++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4778888888888888776543
No 325
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.93 E-value=0.16 Score=55.42 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
++++|.|+.|.|||||.+.++-..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998654
No 326
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.92 E-value=0.25 Score=56.28 Aligned_cols=101 Identities=19% Similarity=0.243 Sum_probs=60.3
Q ss_pred HHHHHHHHh-cCCceEEEEEcCCCchHHHHHHHHHHHHhhcc---cC-CEEEEh--------------------------
Q 000302 165 FQNIMEVLK-DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDK---LF-DKVVFV-------------------------- 213 (1698)
Q Consensus 165 ~~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F-~~~~~~-------------------------- 213 (1698)
.+.++..+. +.+..-++|+|+.|.|||||.+.++....... .| ...+.+
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~ 177 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVL 177 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccc
Confidence 344444444 34457899999999999999999997654211 11 111111
Q ss_pred ---HHHHHHHHHHHccCcEEEEEcCcccccccccccCcccccccccCCCCCCeEEEEEeCchhhh
Q 000302 214 ---ERAEKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVL 275 (1698)
Q Consensus 214 ---~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~ 275 (1698)
..+..++.-+.....-++|+|.+.....+..+...+ ..|..||+||....+.
T Consensus 178 ~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~----------~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 178 DGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL----------HAGVSIIATAHGRDVE 232 (270)
T ss_pred ccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----------hCCCEEEEEechhHHH
Confidence 012222223332367788999987765555543322 2477899999876653
No 327
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.90 E-value=0.26 Score=58.83 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
..+|.++|++|+||||++..++....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~ 248 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYF 248 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999997653
No 328
>PRK13768 GTPase; Provisional
Probab=92.90 E-value=0.13 Score=58.60 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.++.|.|+||+||||++..++...+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~ 27 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLE 27 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHH
Confidence 5789999999999999999987764
No 329
>PF13245 AAA_19: Part of AAA domain
Probab=92.89 E-value=0.31 Score=43.43 Aligned_cols=48 Identities=31% Similarity=0.401 Sum_probs=28.2
Q ss_pred CceEEEEEcCCCchHHHHHH-HHHHHHhhcc-cCCEEEEh----HHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVK-QIAMQVIEDK-LFDKVVFV----ERAEKLRQRL 223 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~-~F~~~~~~----~~~~~l~~~l 223 (1698)
+.+++.|.|++|.|||+++. .+..-..... .-+.++.+ ..++.+.+++
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34678889999999995544 4444443211 12334444 4455666665
No 330
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.87 E-value=0.13 Score=61.76 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQ 200 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~ 200 (1698)
.-..++|+|..|+|||||++.++..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccC
Confidence 3468999999999999999999864
No 331
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.86 E-value=0.088 Score=54.25 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+|.++|++|+||||+|+++....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998653
No 332
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.76 E-value=0.14 Score=54.90 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.|+|+|-||+||||+|..++....
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~ 25 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL 25 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH
Confidence 689999999999999999776654
No 333
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.70 E-value=0.3 Score=56.77 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
-+++-|+|++|+||||||.+++...... -..++|+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yI 89 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFI 89 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 4799999999999999999988776533 3455566
No 334
>PRK06762 hypothetical protein; Provisional
Probab=92.70 E-value=0.1 Score=55.31 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
.++|.|.|+.|+||||+|+.+++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999875
No 335
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.69 E-value=0.16 Score=58.20 Aligned_cols=73 Identities=16% Similarity=0.331 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh---HHHHHHHHHHHc--------------cCc
Q 000302 166 QNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV---ERAEKLRQRLKN--------------VKR 228 (1698)
Q Consensus 166 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~---~~~~~l~~~l~~--------------~k~ 228 (1698)
..+++.+...+.+ +-++|+.|+|||++++.........+.....+-. ..+..+++.+.+ +|+
T Consensus 23 ~~ll~~l~~~~~p-vLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~ 101 (272)
T PF12775_consen 23 SYLLDLLLSNGRP-VLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKK 101 (272)
T ss_dssp HHHHHHHHHCTEE-EEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSE
T ss_pred HHHHHHHHHcCCc-EEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcE
Confidence 4566666665544 4799999999999999988654322211111111 444555544431 588
Q ss_pred EEEEEcCcccc
Q 000302 229 VLVILDNIWKL 239 (1698)
Q Consensus 229 ~LlvlDdv~~~ 239 (1698)
.++.+||+.-.
T Consensus 102 lv~fiDDlN~p 112 (272)
T PF12775_consen 102 LVLFIDDLNMP 112 (272)
T ss_dssp EEEEEETTT-S
T ss_pred EEEEecccCCC
Confidence 99999998443
No 336
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=92.68 E-value=0.13 Score=59.81 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=22.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
++|+|.|-||+||||+|..++.....
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~ 27 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE 27 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh
Confidence 57888999999999999999987753
No 337
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.64 E-value=0.43 Score=49.01 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
..+|-|.|.+|+||||||+.+.......
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999998765
No 338
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.62 E-value=0.19 Score=62.23 Aligned_cols=59 Identities=25% Similarity=0.371 Sum_probs=40.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh----HHHHHHHHHHH-----------ccCcEEEEEcCcccc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV----ERAEKLRQRLK-----------NVKRVLVILDNIWKL 239 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~----~~~~~l~~~l~-----------~~k~~LlvlDdv~~~ 239 (1698)
-+|.-++|++|+||||||.-++++.- |.++-.- ..+..+++++. ..+...+|+|.++..
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaG----YsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAG----YSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcC----ceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence 46999999999999999999998752 4433222 12233333332 147778999999776
No 339
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=92.62 E-value=0.14 Score=59.73 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=23.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
++|+|+|-||+||||+|..++.-...
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~ 26 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAE 26 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987654
No 340
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=92.61 E-value=1.9 Score=49.90 Aligned_cols=154 Identities=11% Similarity=0.012 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCC-ceEEEEEcCCCchHHHHHHHHHHHH--------hhcccCCEEEEh---------HHHHHHHHHHH--
Q 000302 165 FQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQV--------IEDKLFDKVVFV---------ERAEKLRQRLK-- 224 (1698)
Q Consensus 165 ~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~~~---------~~~~~l~~~l~-- 224 (1698)
++.+.+.+..++ .++.-++|..|.||+++|..+++.. ....|-+-+.++ +.+..+.+.+.
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~ 84 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFS 84 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccC
Confidence 445556665544 4677899999999999999999886 222232222333 23334444442
Q ss_pred c---cCcEEEEEcCccccc--ccccccCcccccccccCCCCCCeEEEEEe-CchhhhhcccCCcceEEccCCCHHHHHHH
Q 000302 225 N---VKRVLVILDNIWKLL--NLDAVGIPFGDVKKERNDDRSRCTVLLTS-RNRDVLCNDMNSQKFFLIEVLSYEEAWCL 298 (1698)
Q Consensus 225 ~---~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~g~kilvTt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~L 298 (1698)
. +++-++|+|++.... ..+.+...+.+ ...++.+|++| ....+..........+++.++++++..+.
T Consensus 85 ~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-------Pp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 85 SFVQSQKKILIIKNIEKTSNSLLNALLKTIEE-------PPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred CcccCCceEEEEecccccCHHHHHHHHHHhhC-------CCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 1 477788999986653 34445444444 34566666555 44444432234467899999999998877
Q ss_pred HHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHH
Q 000302 299 FEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKT 332 (1698)
Q Consensus 299 f~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 332 (1698)
+.+. | . -++.++.++...+|.=-|+..
T Consensus 158 l~~~-~--~----~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 158 LLSK-N--K----EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHc-C--C----ChhHHHHHHHHcCCHHHHHHH
Confidence 7654 2 1 123466677777773344444
No 341
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.60 E-value=0.21 Score=60.29 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+-..++|+|..|+|||||+++++...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~ 182 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA 182 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44689999999999999999998754
No 342
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.54 E-value=0.62 Score=57.09 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.++|+++|++|+||||++..++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36999999999999999998887665
No 343
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.53 E-value=0.017 Score=60.06 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=27.4
Q ss_pred eEEecccchhhcccC-CCCCCCCccEEEEecCCCccccCchhHHHhcCCCcceeecccccce
Q 000302 1326 TIICMDNLKIWQEKL-TLDSFCNLYYLRIENCNKLSNIFPWSMLERLQNLDDLRVVCCDSVQ 1386 (1698)
Q Consensus 1326 ~~l~l~~~~~~~~~~-~~~~~~~L~~L~i~~C~~L~~~~~~~~l~~l~~L~~L~i~~c~~l~ 1386 (1698)
+..+.++..|..+.. .+..+++++.|.+.+|.++.+-....+.+-.++|++|+|++|+.|+
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 334444443333322 3344455555556666555542222222233455555555555444
No 344
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.51 E-value=0.26 Score=58.54 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
..+++++|+.|+||||++..++.....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVM 163 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999987643
No 345
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.49 E-value=0.78 Score=51.81 Aligned_cols=146 Identities=20% Similarity=0.238 Sum_probs=81.8
Q ss_pred ccccchHHHHHHHHHHHh----cCCceEEEEEcCCCchHHHHHHHHHHHHhh-cccCCEEEE-----h------------
Q 000302 156 EQFDSRMKIFQNIMEVLK----DTNVGMIGVYGVNGVGKTTLVKQIAMQVIE-DKLFDKVVF-----V------------ 213 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~~-----~------------ 213 (1698)
..++|-..+..++-.++. .++..-+.|+|+.|.|||+|...+..+.+. .++|-.+-- .
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql 103 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQL 103 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence 346777777777777765 455677889999999999999988887321 112211110 0
Q ss_pred ---------------HHHHHHHHHHHc-----cCcEEEEEcCcccccccccccCccccccccc-CCCCCCeEEEEEeCch
Q 000302 214 ---------------ERAEKLRQRLKN-----VKRVLVILDNIWKLLNLDAVGIPFGDVKKER-NDDRSRCTVLLTSRNR 272 (1698)
Q Consensus 214 ---------------~~~~~l~~~l~~-----~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~-~~~~~g~kilvTtR~~ 272 (1698)
+....+...|+. +-++..|+|.++--..-..- ..+-+++|-. ....+-|.|-+|||-.
T Consensus 104 ~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQ-tllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 104 ALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQ-TLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhh-HHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 122233334432 24578888877543110000 0000011100 0145678888999974
Q ss_pred -------hhhhcccCCcceEEccCCCHHHHHHHHHHHh
Q 000302 273 -------DVLCNDMNSQKFFLIEVLSYEEAWCLFEKIV 303 (1698)
Q Consensus 273 -------~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 303 (1698)
.|-. ...-..++-++.++-++...++++..
T Consensus 183 ~lE~LEKRVKS-RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 183 ILELLEKRVKS-RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHh-hcccceeeccCCCChHHHHHHHHHHh
Confidence 2322 23323366677888888888888876
No 346
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.48 E-value=0.17 Score=58.10 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
....+|||.|..|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999988876543
No 347
>PRK03839 putative kinase; Provisional
Probab=92.37 E-value=0.11 Score=55.93 Aligned_cols=24 Identities=42% Similarity=0.599 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.|.|+|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998763
No 348
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.35 E-value=0.12 Score=56.28 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
++++|.|+|+.|+||||+|+.+++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999764
No 349
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.31 E-value=4 Score=53.29 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
-.+|+|+|..|+|||||++.+..-.
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999997543
No 350
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.31 E-value=3.3 Score=44.78 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=60.8
Q ss_pred CcccccchHHHHHHHHHH----HhcCCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhH-----HHHHHHHHHH
Q 000302 154 AYEQFDSRMKIFQNIMEV----LKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVE-----RAEKLRQRLK 224 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~-----~~~~l~~~l~ 224 (1698)
+...++|-+...+.+++- +..-...-|-+||.-|+||+.|++++.+....+ .-..+=|+ ....+.+.|+
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glrLVEV~k~dl~~Lp~l~~~Lr 135 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLRLVEVDKEDLATLPDLVELLR 135 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCeEEEEcHHHHhhHHHHHHHHh
Confidence 445577877666666543 333345678899999999999999999988754 33344442 2234555555
Q ss_pred c-cCcEEEEEcCcccc---cccccccCcc
Q 000302 225 N-VKRVLVILDNIWKL---LNLDAVGIPF 249 (1698)
Q Consensus 225 ~-~k~~LlvlDdv~~~---~~~~~~~~~~ 249 (1698)
. ..||.|..||+.=+ .....++..+
T Consensus 136 ~~~~kFIlFcDDLSFe~gd~~yK~LKs~L 164 (287)
T COG2607 136 ARPEKFILFCDDLSFEEGDDAYKALKSAL 164 (287)
T ss_pred cCCceEEEEecCCCCCCCchHHHHHHHHh
Confidence 2 58999999998433 3344444433
No 351
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.25 E-value=0.32 Score=57.05 Aligned_cols=28 Identities=43% Similarity=0.481 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
+..+|+++|++|+||||++..++...+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4679999999999999999999987653
No 352
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=92.25 E-value=0.19 Score=55.36 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=23.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
+.|+|||-|||||||.++.+..-....
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~ 27 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEM 27 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhc
Confidence 479999999999999999998877644
No 353
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.23 E-value=0.35 Score=56.19 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
-+++-|+|++|+||||||.+++...... -..++|+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyI 89 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFI 89 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEE
Confidence 4689999999999999999988766533 3456666
No 354
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.20 E-value=0.17 Score=58.71 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
.++|.+.|.|||||||.|.+.+-.....
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~ 29 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES 29 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc
Confidence 4789999999999999999977766543
No 355
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.14 E-value=0.29 Score=58.67 Aligned_cols=44 Identities=34% Similarity=0.512 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh---HHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV---ERAEKLRQR 222 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~---~~~~~l~~~ 222 (1698)
-.++.|.|.+|+|||||+.+++...... -..++|+ +..++++.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs~~qi~~R 128 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEESPEQIKLR 128 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcCHHHHHHH
Confidence 4699999999999999999999876543 3466776 334444443
No 356
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=92.13 E-value=0.17 Score=58.53 Aligned_cols=26 Identities=27% Similarity=0.649 Sum_probs=22.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
+|+|.|-||+||||+|..++.....+
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~ 27 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKR 27 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999999877643
No 357
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=0.32 Score=53.13 Aligned_cols=83 Identities=25% Similarity=0.281 Sum_probs=54.6
Q ss_pred CcccccchHHHHHHHHHHHh----c---------CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh-------
Q 000302 154 AYEQFDSRMKIFQNIMEVLK----D---------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV------- 213 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~------- 213 (1698)
.+.++-|-+..+++|.+... . ...+=|.+||.+|.|||-||++|+|+.... |-.++=.
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlRvvGseLiQkyl 260 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLRVVGSELIQKYL 260 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhhhhhHHHHHHHh
Confidence 34556788888888888765 1 124567799999999999999999987644 5333322
Q ss_pred ----HHHHHHHHHHHccCcEEEEEcCccc
Q 000302 214 ----ERAEKLRQRLKNVKRVLVILDNIWK 238 (1698)
Q Consensus 214 ----~~~~~l~~~l~~~k~~LlvlDdv~~ 238 (1698)
....++.+...+.-.-.+.+|.++.
T Consensus 261 GdGpklvRqlF~vA~e~apSIvFiDEIdA 289 (440)
T KOG0726|consen 261 GDGPKLVRELFRVAEEHAPSIVFIDEIDA 289 (440)
T ss_pred ccchHHHHHHHHHHHhcCCceEEeehhhh
Confidence 1122233333334567788888754
No 358
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.10 E-value=0.2 Score=53.91 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 359
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.04 E-value=0.32 Score=59.39 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
.-..++|.|..|+|||||+.++++....
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~a 167 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATV 167 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcc
Confidence 3468999999999999999999987654
No 360
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.03 E-value=0.22 Score=57.12 Aligned_cols=27 Identities=41% Similarity=0.560 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
+.++|.++|++|+||||++..++...+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999999987764
No 361
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.03 E-value=0.56 Score=56.27 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
..++|.++|+.|+||||.+..++.....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~ 200 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGI 200 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3579999999999999999999887653
No 362
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=91.97 E-value=0.11 Score=57.53 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
+|||.|..|+||||+|+.++....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 363
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=0.32 Score=54.28 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=24.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
++|-++||+|.|||+|.++++++..++
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheee
Confidence 789999999999999999999987654
No 364
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=1.7 Score=46.87 Aligned_cols=175 Identities=18% Similarity=0.218 Sum_probs=94.9
Q ss_pred CCCcccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCE-------EE
Q 000302 152 YTAYEQFDSRMKIFQNIMEVLKD-------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK-------VV 211 (1698)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-------~~ 211 (1698)
...+.++-|-++.++++++++.= ...+=+-.||++|.|||-+|++.+.+.... |-. ..
T Consensus 167 tE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT--FLKLAgPQLVQM 244 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT--FLKLAGPQLVQM 244 (424)
T ss_pred cccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch--HHHhcchHHHhh
Confidence 34456778999999999998751 124567899999999999999998765432 311 12
Q ss_pred Eh-HHHHHHHHHH---HccCcEEEEEcCccccc----c----------------cccccCcccccccccCCCCCCeEEEE
Q 000302 212 FV-ERAEKLRQRL---KNVKRVLVILDNIWKLL----N----------------LDAVGIPFGDVKKERNDDRSRCTVLL 267 (1698)
Q Consensus 212 ~~-~~~~~l~~~l---~~~k~~LlvlDdv~~~~----~----------------~~~~~~~~~~~~~~~~~~~~g~kilv 267 (1698)
|+ +.+..++... ++.....|.+|.++... + ++++ .-|. ....-|||.
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQL-DGFs--------s~~~vKviA 315 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL-DGFS--------SDDRVKVIA 315 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhh-cCCC--------CccceEEEe
Confidence 22 3333344332 33568889999875430 0 1111 1111 234668888
Q ss_pred EeCchhhhhc---ccCC-cceEEccCCCHHHHHHHHHHHhC--CCCCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 000302 268 TSRNRDVLCN---DMNS-QKFFLIEVLSYEEAWCLFEKIVG--DSAKASDFRVIADEIVRRCGGLPVAIKTIANAL 337 (1698)
Q Consensus 268 TtR~~~v~~~---~~~~-~~~~~l~~L~~~e~~~Lf~~~~~--~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 337 (1698)
.|-..++... ..+. .+.++...-+++.-.++++-++. ....+-+++++|+.--..-|.--.|+-+-|+++
T Consensus 316 ATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMi 391 (424)
T KOG0652|consen 316 ATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMI 391 (424)
T ss_pred ecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHH
Confidence 8766555432 1222 33455544444444444444442 223344556655433222222223444445544
No 365
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=91.96 E-value=0.24 Score=54.45 Aligned_cols=41 Identities=24% Similarity=0.423 Sum_probs=31.1
Q ss_pred HHHHHHHHHh--cCCceEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 164 IFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 164 ~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
...++++.+. ..+..+|+|.|++|+|||||+-.+....+.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3445566555 4567899999999999999999999988764
No 366
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.93 E-value=0.11 Score=55.37 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998764
No 367
>PRK00625 shikimate kinase; Provisional
Probab=91.91 E-value=0.13 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.|.++||.|+||||+++.+++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998753
No 368
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.89 E-value=0.048 Score=56.75 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=47.0
Q ss_pred cceeeeccccchhHHhhccCccccccccccccccEEeccCCCCcceeecCCccccCCCccEEeeccCcCccc
Q 000302 1038 LMTLRVSYCHNIEEIIRHVGEDVKENRITFNQLKNLELDDLPSLTSFCLGNCTLEFPSLERVFVRNCRNMKT 1109 (1698)
Q Consensus 1038 L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~l~~ 1109 (1698)
++.++-++|.-...-.... ..+++++.|.+.+|..+.+++...+..-.++|+.|+|++|+.++.
T Consensus 103 IeaVDAsds~I~~eGle~L--------~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHL--------RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred EEEEecCCchHHHHHHHHH--------hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 4555656654443333222 347888899999999999888777767789999999999998864
No 369
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=91.88 E-value=6.7 Score=46.08 Aligned_cols=46 Identities=22% Similarity=0.196 Sum_probs=33.2
Q ss_pred eEEccCCCHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHhCCChHH
Q 000302 284 FFLIEVLSYEEAWCLFEKIVGDSAKA--SDFRVIADEIVRRCGGLPVA 329 (1698)
Q Consensus 284 ~~~l~~L~~~e~~~Lf~~~~~~~~~~--~~~~~~~~~i~~~c~GlPla 329 (1698)
.+++++++.+|+..++.-++...... ..-+...+++.--.+|.|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 78999999999999999888422111 33345566677777999864
No 370
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=91.78 E-value=0.14 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
+|.|-|++|+||||+|+.++++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998864
No 371
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=91.74 E-value=0.33 Score=56.16 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=30.3
Q ss_pred HHHHHhc-CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 168 IMEVLKD-TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 168 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
+++.+.. .+-..++|.|..|+|||+|++++++... -|.++++
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv 189 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYV 189 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEE
Confidence 4444441 2345899999999999999999998642 3566666
No 372
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=91.74 E-value=2.3 Score=48.66 Aligned_cols=120 Identities=12% Similarity=0.114 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCC-ceEEEEEcCCCchHHHHHHHHHHHHhh------------cccCCEEEEh----------HHHHHHH
Q 000302 164 IFQNIMEVLKDTN-VGMIGVYGVNGVGKTTLVKQIAMQVIE------------DKLFDKVVFV----------ERAEKLR 220 (1698)
Q Consensus 164 ~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~------------~~~F~~~~~~----------~~~~~l~ 220 (1698)
.-+.+...+..+. .+..-++|+.|+||+++|..++...-. ..|.|..... +.+..++
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~ 84 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIK 84 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHH
Confidence 4456777777654 468889999999999999999876532 2356654432 3334444
Q ss_pred HHHH----ccCcEEEEEcCcccc--cccccccCcccccccccCCCCCCeEEEEEeCc-hhhhhcccCCcceEEccCC
Q 000302 221 QRLK----NVKRVLVILDNIWKL--LNLDAVGIPFGDVKKERNDDRSRCTVLLTSRN-RDVLCNDMNSQKFFLIEVL 290 (1698)
Q Consensus 221 ~~l~----~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~-~~v~~~~~~~~~~~~l~~L 290 (1698)
+.+. ++++-.+|+|+++.. ..++.+...+-+ ...++.+|++|.+ ..+..........+.+.++
T Consensus 85 ~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE-------Pp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 85 KQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLED-------PPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred HHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhc-------CCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 4443 246668899999876 356666555544 3455666555555 4444222333556666654
No 373
>PRK08149 ATP synthase SpaL; Validated
Probab=91.71 E-value=0.17 Score=61.07 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+-..++|+|..|+|||||+..++...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~ 175 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS 175 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC
Confidence 34689999999999999999998643
No 374
>PRK06936 type III secretion system ATPase; Provisional
Probab=91.68 E-value=0.22 Score=60.04 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+-..++|.|..|+|||||.+++++..
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC
Confidence 44689999999999999999998754
No 375
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.67 E-value=0.32 Score=48.44 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
..+|.+.|.-|+||||+++.+++...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998754
No 376
>PRK04040 adenylate kinase; Provisional
Probab=91.67 E-value=0.15 Score=54.82 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.+|+|+|++|+||||+++.+++...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998763
No 377
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=91.65 E-value=0.2 Score=58.26 Aligned_cols=24 Identities=33% Similarity=0.663 Sum_probs=21.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhh
Q 000302 180 IGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
|+|+|-||+||||+|..++.....
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~ 26 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALAR 26 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 899999999999999999987653
No 378
>PRK09354 recA recombinase A; Provisional
Probab=91.61 E-value=0.44 Score=55.83 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
-+++-|+|+.|+||||||.+++...... -..++|+
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yI 94 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFI 94 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 4799999999999999999998776533 3566676
No 379
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.60 E-value=0.42 Score=52.86 Aligned_cols=93 Identities=23% Similarity=0.244 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHH-Hhhcc------------cCCEEEEh---------------HHHHHHHHHHHc-c
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQ-VIEDK------------LFDKVVFV---------------ERAEKLRQRLKN-V 226 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~------------~F~~~~~~---------------~~~~~l~~~l~~-~ 226 (1698)
..+++.|.|+.|.||||+.+.++-- ...+. .|+.+.-- ....++...++. .
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~ 109 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCT 109 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCC
Confidence 3468899999999999999999873 22111 12222111 123334444432 4
Q ss_pred CcEEEEEcCcccccc-c------ccccCcccccccccCCCCCCeEEEEEeCchhhhh
Q 000302 227 KRVLVILDNIWKLLN-L------DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC 276 (1698)
Q Consensus 227 k~~LlvlDdv~~~~~-~------~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~ 276 (1698)
++-|+++|+.....+ . ..+...+. ...++.+|++|...+++.
T Consensus 110 ~~sLvllDE~~~gT~~~d~~~i~~~il~~l~--------~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 110 SRSLVILDELGRGTSTHDGIAIAYATLHYLL--------EEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred CCeEEEEccCCCCCChhhHHHHHHHHHHHHH--------hccCCeEEEEcccHHHHH
Confidence 799999999744321 1 11212222 225789999999988765
No 380
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.59 E-value=0.2 Score=52.52 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=25.3
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
...+++|+|..|+|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45799999999999999999999887643
No 381
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.55 E-value=0.12 Score=56.56 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+|+|.|+.|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 382
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.53 E-value=0.36 Score=48.58 Aligned_cols=104 Identities=15% Similarity=0.310 Sum_probs=38.4
Q ss_pred ChhhhccCCceeEEEecCCCcccCC-ccccCCCcccEEEccCccCCCc--cccccccccceeecCCCCCCccch-Hhhcc
Q 000302 522 PDLFFEGMNELRVVHFTRTCFLSLP-SSLVCLISLRTLSLEGCQVGDV--AIVGQLKKLEILSFRNSDIQQLPR-EIGQL 597 (1698)
Q Consensus 522 ~~~~f~~l~~LrvL~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~~--~~i~~L~~L~~L~Ls~~~i~~LP~-~i~~L 597 (1698)
++..|.++.+|+.+.+.. .+..++ ..|..+.+|+.+.+.++ +..+ ..+.+...|+.+.+.+ .+..++. .+...
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 334455555555555542 333333 23444445555555443 3322 3344444555555543 3333332 23345
Q ss_pred ccccEecccCcccccccCchhhccCccCceeccc
Q 000302 598 VQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMG 631 (1698)
Q Consensus 598 ~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~ 631 (1698)
++|+.+++..+ +..++...+.+. +|+.+.+.
T Consensus 81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 55555555432 444444444444 55555443
No 383
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=91.47 E-value=0.46 Score=57.49 Aligned_cols=37 Identities=32% Similarity=0.567 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
+-..++|.|..|+|||||+.+++.....+ +=+.++++
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~a 178 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFA 178 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEE
Confidence 44689999999999999999998766533 12344544
No 384
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.47 E-value=0.51 Score=57.04 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
..+|+++|+.|+||||++..++...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999888754
No 385
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.42 E-value=0.027 Score=60.96 Aligned_cols=98 Identities=19% Similarity=0.182 Sum_probs=49.5
Q ss_pred ceeEEEecCCCcccCCccccCCCcccEEEccCccCCCccccccccccceeecCCCCCCccch--HhhccccccEecccCc
Q 000302 531 ELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGDVAIVGQLKKLEILSFRNSDIQQLPR--EIGQLVQLRLLDLRNC 608 (1698)
Q Consensus 531 ~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~Ls~~~i~~LP~--~i~~L~~L~~L~L~~~ 608 (1698)
+.+.|++.|+.+..+. -..++..|++|.|+-|.|+.+..+...++|+.|.|+.|.|..+-+ -+.+|++|+.|-|..|
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 3344444444444321 122344555555555555555555555566666666665555532 3456666666666655
Q ss_pred ccccccCc----hhhccCccCceec
Q 000302 609 RRLQAIAP----NVISKLSRLEELY 629 (1698)
Q Consensus 609 ~~l~~lp~----~~i~~L~~L~~L~ 629 (1698)
+-...-+. .++.-|++|+.|+
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 43333222 2345566676665
No 386
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.41 E-value=0.17 Score=54.12 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
...|.++|++|+||||+|+.+++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998863
No 387
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=91.39 E-value=0.54 Score=52.74 Aligned_cols=35 Identities=29% Similarity=0.548 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
-.++.|+|.+|+|||++|.+++...... -..++|+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi 57 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYI 57 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEE
Confidence 4699999999999999999999877543 4667777
No 388
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=91.36 E-value=3.3 Score=51.72 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=38.7
Q ss_pred ccccchHHHHHHHHHHHh----c-CCceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 156 EQFDSRMKIFQNIMEVLK----D-TNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
+.+.+|+.++.+|-..+. + +..+.+-|.|.+|+|||..+..|.+..+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq 447 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQ 447 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHH
Confidence 345789999999988876 3 3456899999999999999999998554
No 389
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=91.32 E-value=0.33 Score=52.36 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
.+.|.|+|+.|+||+|++..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999998874
No 390
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.31 E-value=0.25 Score=50.97 Aligned_cols=26 Identities=35% Similarity=0.650 Sum_probs=22.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
+|++.|.+|+||||++..++......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47899999999999999998876543
No 391
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.28 E-value=2.9 Score=52.08 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=54.9
Q ss_pred ccccchHHHHHHHHHHHhc----------C---CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh---------
Q 000302 156 EQFDSRMKIFQNIMEVLKD----------T---NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV--------- 213 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~----------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~--------- 213 (1698)
+++-|..+.++.+.+.+.- . ...=|-++|++|.|||-||.+++.....+ .+-|
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fisvKGPElL~Ky 741 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FISVKGPELLSKY 741 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEEecCHHHHHHH
Confidence 4556776666666666651 1 12458899999999999999999875422 1222
Q ss_pred -----HHHHHHHHHHHccCcEEEEEcCcccc
Q 000302 214 -----ERAEKLRQRLKNVKRVLVILDNIWKL 239 (1698)
Q Consensus 214 -----~~~~~l~~~l~~~k~~LlvlDdv~~~ 239 (1698)
.....+..+.+..|.|.+.+|.++..
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSI 772 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEecccccc
Confidence 33455666666679999999998664
No 392
>PRK10867 signal recognition particle protein; Provisional
Probab=91.23 E-value=6 Score=48.43 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
...+|.++|++|+||||.|..++...+.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46799999999999999999998876544
No 393
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.22 E-value=0.3 Score=47.76 Aligned_cols=24 Identities=42% Similarity=0.599 Sum_probs=21.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhh
Q 000302 180 IGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
|.+.|.||+||||++..++.....
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~ 25 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAE 25 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999987653
No 394
>PRK06217 hypothetical protein; Validated
Probab=91.21 E-value=0.18 Score=54.44 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.|.|.|++|+||||+|+++++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 395
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.21 E-value=0.3 Score=54.49 Aligned_cols=41 Identities=29% Similarity=0.537 Sum_probs=32.9
Q ss_pred HHHHHHHh--cCCceEEEEEcCCCchHHHHHHHHHHHHhhccc
Q 000302 166 QNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKL 206 (1698)
Q Consensus 166 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 206 (1698)
.+++..+. .++..+|||.|.+|+|||||.-.+......+.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 34555554 567789999999999999999999998876644
No 396
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=91.16 E-value=0.4 Score=63.22 Aligned_cols=167 Identities=18% Similarity=0.208 Sum_probs=89.4
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH-hh-cc------------cCCEEEE-h--------------HHHHHHHHHHHc-
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV-IE-DK------------LFDKVVF-V--------------ERAEKLRQRLKN- 225 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~-~~------------~F~~~~~-~--------------~~~~~l~~~l~~- 225 (1698)
+.+++.|.|+.|.||||+.+.+.-.. .. .. .|+.+.- + .....+...+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~ 400 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKT 400 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhc
Confidence 44799999999999999999998652 11 11 1222211 1 011112222221
Q ss_pred cCcEEEEEcCccccccc---ccccCcccccccccCCCCCCeEEEEEeCchhhhhcccCCcc--eEEccCCCHHHHHHHHH
Q 000302 226 VKRVLVILDNIWKLLNL---DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQK--FFLIEVLSYEEAWCLFE 300 (1698)
Q Consensus 226 ~k~~LlvlDdv~~~~~~---~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~~~~~~~--~~~l~~L~~~e~~~Lf~ 300 (1698)
.++-|+++|......+. ..+...+-. .. ...|+.+|+||...++......... ...+. ++.+.-.-.++
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe---~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~~l~p~Yk 474 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILE---YL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDEETLSPTYK 474 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHH---HH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCCCCceEEE
Confidence 37899999998775332 222111110 00 2357899999998876542111111 11111 11110000011
Q ss_pred HHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHHhcCCchhHHHHHHHHHc
Q 000302 301 KIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWNDSLERLRN 354 (1698)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~w~~~~~~l~~ 354 (1698)
-..|. +. ...|-+||+++ |+|-.|.--|..+......++.++++.+..
T Consensus 475 l~~G~--~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 475 LLKGI--PG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred ECCCC--CC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11121 11 34578899887 899999988888876655567777776654
No 397
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=91.15 E-value=0.51 Score=57.32 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=35.5
Q ss_pred cccchHHHHHHHHHHHhc-------C---------CceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 157 QFDSRMKIFQNIMEVLKD-------T---------NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 157 ~~~gr~~~~~~l~~~l~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.++|.+..++.+..++.+ . ...-|.++|+.|+|||++|+.++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478999998888665521 0 125689999999999999999997653
No 398
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.13 E-value=0.17 Score=54.11 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
+|+|.|..|+||||||+.++....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998765
No 399
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=91.09 E-value=0.15 Score=55.09 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+|.|+|++|+||||+|+.+++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999865
No 400
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.08 E-value=0.014 Score=61.28 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=70.5
Q ss_pred ccChhhhccCCceeEEEecCCCcccCCccccCCCcccEEEccCccCCC-ccccccccccceeecCCCCCCccchHhhccc
Q 000302 520 KIPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVGD-VAIVGQLKKLEILSFRNSDIQQLPREIGQLV 598 (1698)
Q Consensus 520 ~i~~~~f~~l~~LrvL~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~ 598 (1698)
.+|-.-+..++...+||++.|.+..+-..|+.++.|.-|+++.+.+.. |..++.+..++.+++..|+.+.+|.+.++++
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEP 111 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccC
Confidence 344333456778888888888887777777778888888888887774 6788888888888888888888888888888
Q ss_pred cccEecccCcc
Q 000302 599 QLRLLDLRNCR 609 (1698)
Q Consensus 599 ~L~~L~L~~~~ 609 (1698)
+++++++.++.
T Consensus 112 ~~k~~e~k~~~ 122 (326)
T KOG0473|consen 112 HPKKNEQKKTE 122 (326)
T ss_pred CcchhhhccCc
Confidence 88888887775
No 401
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=91.07 E-value=0.26 Score=59.59 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQ 200 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~ 200 (1698)
-.+++|+|..|+|||||++.++..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999988754
No 402
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.07 E-value=0.37 Score=51.63 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
-.+.+|.||.|+||||||..+.-+.
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3588999999999999999997544
No 403
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=91.07 E-value=0.24 Score=52.69 Aligned_cols=26 Identities=35% Similarity=0.654 Sum_probs=22.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
+.|+|||-|||||||.++.+..-...
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~ 27 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAE 27 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHH
Confidence 57999999999999999999877654
No 404
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.03 E-value=0.18 Score=54.32 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.+|.|+|+.|+||||+++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 405
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.94 E-value=2.2 Score=49.30 Aligned_cols=83 Identities=22% Similarity=0.342 Sum_probs=54.6
Q ss_pred cccccchHHHHHHHHHHHh---------c-----CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEE-------EEh
Q 000302 155 YEQFDSRMKIFQNIMEVLK---------D-----TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKV-------VFV 213 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~---------~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-------~~~ 213 (1698)
..++-|-+..++.+.+... + ...+-|-++|++|.|||-||++++.+.... |-.+ =|+
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~--fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGAN--FINVSVSNLTSKWF 168 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCC--cceeeccccchhhH
Confidence 3455667777777766554 0 134678899999999999999999987543 5433 244
Q ss_pred HHHHHHHHHHH----ccCcEEEEEcCcccc
Q 000302 214 ERAEKLRQRLK----NVKRVLVILDNIWKL 239 (1698)
Q Consensus 214 ~~~~~l~~~l~----~~k~~LlvlDdv~~~ 239 (1698)
+.++.+.+.+- +=+...|.+|.|...
T Consensus 169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~ 198 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSF 198 (386)
T ss_pred HHHHHHHHHHHhhhhhcCcceeehhhHHHH
Confidence 44444433332 236788999988653
No 406
>PTZ00185 ATPase alpha subunit; Provisional
Probab=90.91 E-value=0.48 Score=57.40 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCchHHHHH-HHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLV-KQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa-~~v~~~~ 201 (1698)
.-..++|.|..|+|||+|| ..+.++.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~ 214 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV 214 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh
Confidence 3468899999999999997 6667765
No 407
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=90.91 E-value=0.27 Score=51.03 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=23.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
||+|+|+.|+|||||+..+....+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999987644
No 408
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=90.86 E-value=0.3 Score=53.70 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAM 199 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~ 199 (1698)
.+++|+|+.|.||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6999999999999999999984
No 409
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=90.81 E-value=0.15 Score=49.65 Aligned_cols=23 Identities=48% Similarity=0.577 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 000302 180 IGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
|-|+|..|+||||+|+.++....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG 24 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT
T ss_pred EeeECCCccHHHHHHHHHHHHcC
Confidence 56899999999999999998764
No 410
>PRK04296 thymidine kinase; Provisional
Probab=90.76 E-value=0.57 Score=50.75 Aligned_cols=26 Identities=31% Similarity=0.287 Sum_probs=22.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
.++.|+|+.|.||||+|...+.+...
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~ 28 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE 28 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 47889999999999999999887653
No 411
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.75 E-value=0.18 Score=52.12 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
+|.|.|+.|+||||+|+.++....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998753
No 412
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=90.73 E-value=0.59 Score=61.90 Aligned_cols=168 Identities=20% Similarity=0.221 Sum_probs=91.9
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHHh--------------hcccCCEEEEh---------------HHHHHHHHHHHc
Q 000302 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVI--------------EDKLFDKVVFV---------------ERAEKLRQRLKN 225 (1698)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~--------------~~~~F~~~~~~---------------~~~~~l~~~l~~ 225 (1698)
.+.+++.|.|+.+.||||+.+.++--.- .-..|+.+... ....++...+..
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~ 404 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEK 404 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHh
Confidence 3457899999999999999999974311 01234444322 111122222221
Q ss_pred -cCcEEEEEcCcccccccc---cccCcccccccccCCCCCCeEEEEEeCchhhhhcccCCcc--eEEccCCCHHHHHHHH
Q 000302 226 -VKRVLVILDNIWKLLNLD---AVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLCNDMNSQK--FFLIEVLSYEEAWCLF 299 (1698)
Q Consensus 226 -~k~~LlvlDdv~~~~~~~---~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~~~~~~~~--~~~l~~L~~~e~~~Lf 299 (1698)
.++-|+++|......+.. .+...+-. .. ...|+.+|+||...+++........ ...+.. +.+.-.-.|
T Consensus 405 ~~~~sLvLlDE~~~GtDp~eg~ala~aile---~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~-d~~~l~~~Y 478 (782)
T PRK00409 405 ADKNSLVLFDELGAGTDPDEGAALAISILE---YL--RKRGAKIIATTHYKELKALMYNREGVENASVEF-DEETLRPTY 478 (782)
T ss_pred CCcCcEEEecCCCCCCCHHHHHHHHHHHHH---HH--HHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE-ecCcCcEEE
Confidence 377899999987663321 22111110 00 2357899999999877653111111 112211 111100111
Q ss_pred HHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHHhcCCchhHHHHHHHHHc
Q 000302 300 EKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWNDSLERLRN 354 (1698)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~w~~~~~~l~~ 354 (1698)
+-..|.. -...|-+||+++ |+|-.|+--|..+-.......+.++..+..
T Consensus 479 kl~~G~~-----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 479 RLLIGIP-----GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred EEeeCCC-----CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1111221 134578899888 899999999988766666567777776654
No 413
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=90.73 E-value=0.61 Score=52.42 Aligned_cols=37 Identities=32% Similarity=0.448 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcc----cCCEEEEh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFV 213 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~~~ 213 (1698)
-.++.|+|.+|+|||+||.+++....... .=..++|+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi 59 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYI 59 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEE
Confidence 46999999999999999999987654221 01456777
No 414
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=90.72 E-value=0.35 Score=56.97 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=39.6
Q ss_pred cccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 155 YEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+..++|.+..+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 45679999999888877777766777899999999999999998654
No 415
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=0.53 Score=54.02 Aligned_cols=84 Identities=20% Similarity=0.182 Sum_probs=52.2
Q ss_pred cccccchHHHHHHHHHHHhc------------CCceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh------HHH
Q 000302 155 YEQFDSRMKIFQNIMEVLKD------------TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV------ERA 216 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~------~~~ 216 (1698)
.+++.|.++.++-|.++..- ..=+-|..+|++|.|||-||++||...... .|....-. +..
T Consensus 211 W~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tT-FFNVSsstltSKwRGeS 289 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTT-FFNVSSSTLTSKWRGES 289 (491)
T ss_pred hHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCe-EEEechhhhhhhhccch
Confidence 34567777777766666541 122468899999999999999999988643 34433221 333
Q ss_pred HHHHHHHH----ccCcEEEEEcCcccc
Q 000302 217 EKLRQRLK----NVKRVLVILDNIWKL 239 (1698)
Q Consensus 217 ~~l~~~l~----~~k~~LlvlDdv~~~ 239 (1698)
+++.+-|- -.-.--|.+|.++..
T Consensus 290 EKlvRlLFemARfyAPStIFiDEIDsl 316 (491)
T KOG0738|consen 290 EKLVRLLFEMARFYAPSTIFIDEIDSL 316 (491)
T ss_pred HHHHHHHHHHHHHhCCceeehhhHHHH
Confidence 34333332 124457888887553
No 416
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=90.70 E-value=0.22 Score=51.29 Aligned_cols=28 Identities=25% Similarity=0.558 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
.++++|+|+.|+|||||+..+....+.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 3689999999999999999999988765
No 417
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=90.67 E-value=0.32 Score=52.55 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=72.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh-hc------------ccCCEEEEh---------------HHHHHHHHHHHc-cCcE
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVI-ED------------KLFDKVVFV---------------ERAEKLRQRLKN-VKRV 229 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~-~~------------~~F~~~~~~---------------~~~~~l~~~l~~-~k~~ 229 (1698)
++.|.|+.|.||||+.+.++-... .+ ..||...-. ....++...+.. .++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 478999999999999999984321 11 112222111 112223333331 3788
Q ss_pred EEEEcCcccccccc---cccCc-ccccccccCCCCCCeEEEEEeCchhhhhccc--CCcceEEccCCCHHHHHHHHHHHh
Q 000302 230 LVILDNIWKLLNLD---AVGIP-FGDVKKERNDDRSRCTVLLTSRNRDVLCNDM--NSQKFFLIEVLSYEEAWCLFEKIV 303 (1698)
Q Consensus 230 LlvlDdv~~~~~~~---~~~~~-~~~~~~~~~~~~~g~kilvTtR~~~v~~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~ 303 (1698)
++++|+.-...+.. .+... +..+ . ...++.+|++|...++..... .....+.+....+++. -.|..+.
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l----~-~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~-~~~~Y~l 154 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYL----L-EKIGALTLFATHYHELTKLADEHPGVRNLHMSADEETEN-LTFLYKL 154 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHH----H-hcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCc-eeEEEEE
Confidence 99999986553321 11111 1110 0 124778999999887765311 1112222222111110 0111111
Q ss_pred CCCCCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 000302 304 GDSAKASDFRVIADEIVRRCGGLPVAIKTIAN 335 (1698)
Q Consensus 304 ~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 335 (1698)
.... .-...|.++++++ |+|-.+..-|.
T Consensus 155 ~~G~---~~~s~a~~~a~~~-g~~~~i~~~a~ 182 (185)
T smart00534 155 TPGV---AGKSYGIEVAKLA-GLPKEVIERAK 182 (185)
T ss_pred eECC---CCCcHHHHHHHHh-CCCHHHHHHHH
Confidence 1111 1123677888887 78877666554
No 418
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=0.44 Score=52.98 Aligned_cols=61 Identities=30% Similarity=0.408 Sum_probs=42.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh--------HHHHHHHHHHH---ccCcEEEEEcCcccc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV--------ERAEKLRQRLK---NVKRVLVILDNIWKL 239 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~--------~~~~~l~~~l~---~~k~~LlvlDdv~~~ 239 (1698)
...++|||+.|.|||-+|+.|+...-+. |-.++-- +.+..|+++.. +...|.|.+||++..
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~n--fl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAi 237 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVN--FLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAI 237 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCc--eEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhh
Confidence 4589999999999999999999876543 4322211 34445555443 346799999998654
No 419
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.62 E-value=0.42 Score=48.04 Aligned_cols=115 Identities=14% Similarity=0.291 Sum_probs=63.4
Q ss_pred CCCCeEEEEEecccCCCCccChhhhccCCceeEEEecCCCcccCC-ccccCCCcccEEEccCccCCC--ccccccccccc
Q 000302 502 ECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSLP-SSLVCLISLRTLSLEGCQVGD--VAIVGQLKKLE 578 (1698)
Q Consensus 502 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~l~~LrvL~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~--~~~i~~L~~L~ 578 (1698)
.|++|+.+.+.. ....+....|..++.|+.+.+.++ +..++ ..|..+..|+.+.+.. .+.. ...+....+|+
T Consensus 10 ~~~~l~~i~~~~---~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN---TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS---T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC---CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 466788877653 356788888999989999999875 76665 4577887899999976 3332 35677789999
Q ss_pred eeecCCCCCCccch-HhhccccccEecccCcccccccCchhhccCccC
Q 000302 579 ILSFRNSDIQQLPR-EIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRL 625 (1698)
Q Consensus 579 ~L~Ls~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L 625 (1698)
.+++..+ +..++. .+.+. +|+.+.+.. .+..++.+.+.+.++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 9999765 666654 45665 888888765 3666776666655554
No 420
>PRK00889 adenylylsulfate kinase; Provisional
Probab=90.60 E-value=0.29 Score=52.42 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
...+|.|+|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999999988753
No 421
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.58 E-value=1.4 Score=53.12 Aligned_cols=47 Identities=21% Similarity=0.353 Sum_probs=34.7
Q ss_pred HHHHHHHHHHh-----cC--CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 163 KIFQNIMEVLK-----DT--NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 163 ~~~~~l~~~l~-----~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
+-++++..||. .+ +.+|.-|.|++|+||||.++.++...- +..+=|.
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg----~~~~Ew~ 142 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG----YQLIEWS 142 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC----ceeeeec
Confidence 34667777776 33 456999999999999999999998653 4444554
No 422
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=90.57 E-value=0.6 Score=56.41 Aligned_cols=47 Identities=19% Similarity=0.118 Sum_probs=36.3
Q ss_pred ccccchHHHHHHHHHHHh-------c-------C----CceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 156 EQFDSRMKIFQNIMEVLK-------D-------T----NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~-------~-------~----~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
..++|.+..++.+..++. . + ....|.++|+.|+|||++|+.++....
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 346899999988876661 1 1 124789999999999999999997653
No 423
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=90.52 E-value=0.73 Score=48.13 Aligned_cols=89 Identities=25% Similarity=0.287 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhccc------CCE------------------------EEEh------------H
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKL------FDK------------------------VVFV------------E 214 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~------------------------~~~~------------~ 214 (1698)
..+|-|++..|.||||.|..++-+...... |-. ..|. .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 468889999999999999998876543211 100 0121 1
Q ss_pred HHHHHHHHHHccCcEEEEEcCcccccc-----cccccCcccccccccCCCCCCeEEEEEeCch
Q 000302 215 RAEKLRQRLKNVKRVLVILDNIWKLLN-----LDAVGIPFGDVKKERNDDRSRCTVLLTSRNR 272 (1698)
Q Consensus 215 ~~~~l~~~l~~~k~~LlvlDdv~~~~~-----~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~ 272 (1698)
..+..++.+..++-=++|||.+-.... .+++...+.. ...+.-||+|-|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~-------rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE-------RPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh-------CCCCCEEEEECCCC
Confidence 123344455544555999999865532 3344333332 44567899999986
No 424
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=90.49 E-value=0.3 Score=56.85 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
....++|+|..|+|||||++.++...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~ 93 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT 93 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC
Confidence 34689999999999999999998543
No 425
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=90.47 E-value=0.27 Score=59.48 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
.-.+++|+|..|+|||||+++++...
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~ 179 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP 179 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC
Confidence 44689999999999999999988643
No 426
>PRK06851 hypothetical protein; Provisional
Probab=90.46 E-value=1.7 Score=51.46 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=26.3
Q ss_pred cCCceEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 174 DTNVGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 174 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
++--+++.|.|++|+|||||++.++.....+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~ 241 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER 241 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhC
Confidence 3345789999999999999999999987644
No 427
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=90.44 E-value=0.51 Score=53.82 Aligned_cols=25 Identities=40% Similarity=0.644 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
.|.++|++|+||||+|++++.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987653
No 428
>PRK13949 shikimate kinase; Provisional
Probab=90.40 E-value=0.23 Score=52.53 Aligned_cols=25 Identities=40% Similarity=0.392 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
+.|.|+|+.|+||||+++.+++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998764
No 429
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=90.39 E-value=0.47 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCchHHHHH-HHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLV-KQIAMQ 200 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa-~~v~~~ 200 (1698)
-..++|.|..|+|||+|| ..+.+.
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~ 93 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ 93 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh
Confidence 468999999999999996 556554
No 430
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=90.39 E-value=0.53 Score=57.68 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
.-..++|.|..|+|||||+.++++....
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~ 169 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQIARQAKV 169 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHHHHHhhhh
Confidence 3468899999999999999999988654
No 431
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=90.32 E-value=0.36 Score=56.76 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=38.9
Q ss_pred CCcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 153 TAYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 153 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
.+...++|.+..++.+.-.+.+.+..-+-+.|..|+||||+|+.+..-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3456789999999888766554555568899999999999999997654
No 432
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.31 E-value=1.6 Score=50.23 Aligned_cols=58 Identities=24% Similarity=0.354 Sum_probs=43.9
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh------------HHHHHHHHHHHcc-CcEEEEEcCccc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV------------ERAEKLRQRLKNV-KRVLVILDNIWK 238 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~------------~~~~~l~~~l~~~-k~~LlvlDdv~~ 238 (1698)
.+-|-.||++|.|||-.|+.++.+. ..|+.++. ..++.+.++-++. |..|+.+|..+.
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~S----GlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADA 454 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHS----GLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADA 454 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhc----CCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHH
Confidence 5678999999999999999999863 46776665 4567788887654 556777787643
No 433
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=90.29 E-value=0.25 Score=52.88 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998764
No 434
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=90.28 E-value=0.39 Score=57.05 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=37.4
Q ss_pred ccccchHHHHHHHHHHHhcC--------------CceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 156 EQFDSRMKIFQNIMEVLKDT--------------NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
..++|.++.++.+.-++... ..+-|.++|+.|+|||++|+.++....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789988888887666521 136789999999999999999998764
No 435
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=90.27 E-value=0.56 Score=56.69 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 162 MKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 162 ~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
...++.+++.+...+...+.|.|+||.|||++.+.+.+..+.
T Consensus 7 ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 7 RRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 345667777777667789999999999999999999988764
No 436
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=90.26 E-value=0.2 Score=52.04 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+|.++|+.|+||||+|+++....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 437
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=90.16 E-value=0.37 Score=58.41 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQ 200 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~ 200 (1698)
.-..++|+|..|+|||||+++++..
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRF 191 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999754
No 438
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.15 E-value=0.7 Score=59.69 Aligned_cols=26 Identities=35% Similarity=0.615 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.++|+++|+.|+||||.+..++....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 46999999999999999999987664
No 439
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.15 E-value=0.25 Score=50.55 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 000302 180 IGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
|.++|+.|+|||+||+.+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999887
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.12 E-value=0.61 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
++.|.|++|+|||+||.+++....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~ 24 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL 24 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999877654
No 441
>PRK13947 shikimate kinase; Provisional
Probab=90.06 E-value=0.24 Score=52.83 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
-|.|+|++|+||||+|+.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 442
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=90.05 E-value=0.21 Score=53.76 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999999853
No 443
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.02 E-value=0.53 Score=56.28 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
....|.|.|+.|+||||+++.+.....
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 347899999999999999999887653
No 444
>PRK05922 type III secretion system ATPase; Validated
Probab=89.99 E-value=0.38 Score=58.09 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQ 200 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~ 200 (1698)
.-..++|+|..|+|||||.+.++..
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~ 180 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKG 180 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcc
Confidence 3467999999999999999999865
No 445
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=89.93 E-value=0.33 Score=53.53 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=27.5
Q ss_pred HHHhcCCceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 170 EVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 170 ~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+.+.+.++++|+++|..|+|||||...+....
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34446689999999999999999999998865
No 446
>PRK14530 adenylate kinase; Provisional
Probab=89.87 E-value=0.26 Score=54.71 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998775
No 447
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=89.86 E-value=0.25 Score=50.51 Aligned_cols=20 Identities=45% Similarity=0.743 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 000302 179 MIGVYGVNGVGKTTLVKQIA 198 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~ 198 (1698)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999998
No 448
>PRK05439 pantothenate kinase; Provisional
Probab=89.86 E-value=0.48 Score=54.84 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
...-+|||.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999887553
No 449
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=89.86 E-value=0.27 Score=59.36 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
.-.+++|+|..|+|||||++.++...
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~~~ 199 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARYT 199 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhCCC
Confidence 34689999999999999999888653
No 450
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=89.75 E-value=0.25 Score=53.43 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.-.++||+|.+|+|||||++.++--.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 346899999999999999999987554
No 451
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=89.74 E-value=0.29 Score=51.98 Aligned_cols=25 Identities=36% Similarity=0.419 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
...|.|+|+.|+||||+|+.++...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3579999999999999999999874
No 452
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=89.72 E-value=0.45 Score=57.55 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
...+++|+|..|+|||||++.++...
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~ 161 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT 161 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999888644
No 453
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=89.71 E-value=0.57 Score=57.92 Aligned_cols=35 Identities=37% Similarity=0.557 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
-.++.|.|.+|+|||||+.+++....... ..++|+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYv 128 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYV 128 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEE
Confidence 46999999999999999999987765431 356676
No 454
>PRK14974 cell division protein FtsY; Provisional
Probab=89.71 E-value=0.79 Score=53.94 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
+..+|.++|+.|+||||++..++...+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999877653
No 455
>PRK00300 gmk guanylate kinase; Provisional
Probab=89.67 E-value=0.29 Score=54.04 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
...+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999864
No 456
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=89.66 E-value=0.29 Score=46.49 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCchHHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIA 198 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~ 198 (1698)
-.+++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 457
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.65 E-value=0.027 Score=59.23 Aligned_cols=90 Identities=12% Similarity=0.115 Sum_probs=75.8
Q ss_pred ccCC-ccccCCCcccEEEccCccCCCc-cccccccccceeecCCCCCCccchHhhccccccEecccCcccccccCchhhc
Q 000302 543 LSLP-SSLVCLISLRTLSLEGCQVGDV-AIVGQLKKLEILSFRNSDIQQLPREIGQLVQLRLLDLRNCRRLQAIAPNVIS 620 (1698)
Q Consensus 543 ~~lp-~~i~~L~~Lr~L~L~~~~l~~~-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~ 620 (1698)
..+| ..+.......+||++.+++... ..+..+..|..||++.|.+..+|..++++..++++++..| .....|.+ .+
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~~ 108 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-QK 108 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-cc
Confidence 3455 4467778889999999987765 6788899999999999999999999999999999999888 68888988 88
Q ss_pred cCccCceecccCcc
Q 000302 621 KLSRLEELYMGDSF 634 (1698)
Q Consensus 621 ~L~~L~~L~l~~~~ 634 (1698)
+++.++.++..++.
T Consensus 109 k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTE 122 (326)
T ss_pred ccCCcchhhhccCc
Confidence 99999988876654
No 458
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=89.65 E-value=0.24 Score=50.40 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
.|+|+|+.|+|||||++.++...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999764
No 459
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.65 E-value=0.2 Score=29.96 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=6.9
Q ss_pred ccceeecCCCCCCccc
Q 000302 576 KLEILSFRNSDIQQLP 591 (1698)
Q Consensus 576 ~L~~L~Ls~~~i~~LP 591 (1698)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555566665555554
No 460
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=89.65 E-value=0.58 Score=54.20 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=41.5
Q ss_pred ccccchHHHHHHHHHHHh------cCCceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 156 EQFDSRMKIFQNIMEVLK------DTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
..|+|.++.++++++.+. +..-+++-++|+-|.||||||..+.+-.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999987 34568999999999999999999988765
No 461
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=89.62 E-value=0.39 Score=56.60 Aligned_cols=49 Identities=14% Similarity=0.288 Sum_probs=41.9
Q ss_pred CcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.+..++|.++.+..++..+.++...-|.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3567899999888888888888877778999999999999999987554
No 462
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=89.61 E-value=0.43 Score=60.54 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=39.6
Q ss_pred CcccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 154 AYEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 154 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
....++|.+..++.+..++......-|-|+|+.|+|||++|+.+++..
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 355789999999999888775555566899999999999999998754
No 463
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=89.59 E-value=0.28 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 000302 180 IGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
|.|+|+.|+||||+|+.++....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 464
>PRK03846 adenylylsulfate kinase; Provisional
Probab=89.56 E-value=0.46 Score=51.98 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 175 TNVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 175 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.+..+|+|+|++|+||||+|+.+.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998764
No 465
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=89.55 E-value=0.32 Score=52.64 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 466
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=89.53 E-value=0.36 Score=58.40 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
-..++|+|..|+|||||++.++...
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~ 164 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNT 164 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC
Confidence 4689999999999999999888643
No 467
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=89.52 E-value=0.82 Score=52.76 Aligned_cols=23 Identities=43% Similarity=0.652 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQ 200 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~ 200 (1698)
+.|+|||+.||||+||.+.+.-.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcC
Confidence 57999999999999999998753
No 468
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.49 E-value=0.48 Score=50.62 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
++.++|++|+||||+++.++.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999987654
No 469
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=89.46 E-value=1.2 Score=44.03 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV 213 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~ 213 (1698)
-.++.+.|++|.||+||..-+.-.....-.|...+|+
T Consensus 28 GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l 64 (213)
T COG4136 28 GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWL 64 (213)
T ss_pred CcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEE
Confidence 3689999999999999999888877655334457776
No 470
>PRK06820 type III secretion system ATPase; Validated
Probab=89.41 E-value=0.49 Score=57.39 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
.-..++|+|..|+|||||+++++...
T Consensus 162 ~Gqri~I~G~sG~GKStLl~~I~~~~ 187 (440)
T PRK06820 162 EGQRIGIFAAAGVGKSTLLGMLCADS 187 (440)
T ss_pred CCCEEEEECCCCCChHHHHHHHhccC
Confidence 34589999999999999999988643
No 471
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=89.35 E-value=0.25 Score=52.21 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 000302 180 IGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
|.|+|+.|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999874
No 472
>PRK13975 thymidylate kinase; Provisional
Probab=89.35 E-value=0.3 Score=53.45 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=23.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
.+|.|.|+.|+||||+|+.+++....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999998753
No 473
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=89.34 E-value=0.2 Score=50.23 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=47.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEhHHHHHHHHHHHccCcEEEEEcCcccc---cccccccCcccccccc
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFVERAEKLRQRLKNVKRVLVILDNIWKL---LNLDAVGIPFGDVKKE 255 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~---~~~~~~~~~~~~~~~~ 255 (1698)
.+.|+|-||+||+++.+.+|.-.-. +.+...+|++..++-.+.+.++-|. -.|+. .+.+.+-.+.-.
T Consensus 22 K~vivGng~VGKssmiqryCkgifT-kdykktIgvdflerqi~v~~Edvr~-----mlWdtagqeEfDaItkAyyr---- 91 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKGIFT-KDYKKTIGVDFLERQIKVLIEDVRS-----MLWDTAGQEEFDAITKAYYR---- 91 (246)
T ss_pred EEEEECCCccchHHHHHHHhccccc-cccccccchhhhhHHHHhhHHHHHH-----HHHHhccchhHHHHHHHHhc----
Confidence 4579999999999999999976543 3477888984433222111110000 02555 345555444443
Q ss_pred cCCCCCCeEEEEEeCch
Q 000302 256 RNDDRSRCTVLLTSRNR 272 (1698)
Q Consensus 256 ~~~~~~g~kilvTtR~~ 272 (1698)
+...|..++.|.+.
T Consensus 92 ---gaqa~vLVFSTTDr 105 (246)
T KOG4252|consen 92 ---GAQASVLVFSTTDR 105 (246)
T ss_pred ---cccceEEEEecccH
Confidence 55666666666544
No 474
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=89.34 E-value=0.34 Score=50.98 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhh
Q 000302 180 IGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 180 i~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
|.|.|..|+||||+++.+++..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999998854
No 475
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=89.33 E-value=1 Score=47.83 Aligned_cols=90 Identities=24% Similarity=0.294 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhccc------C----------------CEEE---------Eh-----------
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKL------F----------------DKVV---------FV----------- 213 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F----------------~~~~---------~~----------- 213 (1698)
+...|-|+|..|-||||.|..++-+...... | ..+- |.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 4478999999999999999998876543211 0 1111 11
Q ss_pred -HHHHHHHHHHHccCcEEEEEcCccccc-----ccccccCcccccccccCCCCCCeEEEEEeCch
Q 000302 214 -ERAEKLRQRLKNVKRVLVILDNIWKLL-----NLDAVGIPFGDVKKERNDDRSRCTVLLTSRNR 272 (1698)
Q Consensus 214 -~~~~~l~~~l~~~k~~LlvlDdv~~~~-----~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~ 272 (1698)
...+..++.+..++-=++|||.+-... +.+++...+.. ...+.-||+|-|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~-------rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA-------RPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc-------CCCCCEEEEECCCC
Confidence 112334455554455699999986653 33444333332 44567899999986
No 476
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=89.27 E-value=0.75 Score=55.51 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.-..++|.|-.|+|||||+.++++...
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~ 166 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAG 166 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhc
Confidence 346899999999999999999998764
No 477
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.21 E-value=0.28 Score=53.08 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
.+|.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997653
No 478
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=89.20 E-value=0.76 Score=55.79 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=22.6
Q ss_pred CceEEEEEc-CCCchHHHHHHHHHHHHh
Q 000302 176 NVGMIGVYG-VNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 176 ~~~vi~I~G-~gGiGKTtLa~~v~~~~~ 202 (1698)
..++|+|.. -||+||||+|..++....
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA 132 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLA 132 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHH
Confidence 457888887 589999999999998765
No 479
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=89.17 E-value=0.52 Score=48.65 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 164 IFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 164 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
.++++.+.+.+ +++.++|..|+|||||+..+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 46667777755 689999999999999999998764
No 480
>PRK14527 adenylate kinase; Provisional
Probab=89.10 E-value=0.36 Score=52.53 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
...+|.|+|++|+||||+|+.+++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999987764
No 481
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=89.10 E-value=0.86 Score=51.83 Aligned_cols=37 Identities=35% Similarity=0.470 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhcc----cCCEEEEh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIEDK----LFDKVVFV 213 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~~~ 213 (1698)
..+.=|+|.+|+|||.|+-+++-...... .=..++|+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyi 78 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYI 78 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEE
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEE
Confidence 35899999999999999999987654322 23468888
No 482
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=89.05 E-value=0.52 Score=52.19 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=22.3
Q ss_pred eEEEEEc-CCCchHHHHHHHHHHHHhh
Q 000302 178 GMIGVYG-VNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 178 ~vi~I~G-~gGiGKTtLa~~v~~~~~~ 203 (1698)
++|+|+| -||+||||++..++.-...
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~ 28 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALAR 28 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 5899999 5789999999999987654
No 483
>PRK09099 type III secretion system ATPase; Provisional
Probab=88.96 E-value=0.48 Score=57.57 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+-.+++|.|..|+|||||+++++...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998543
No 484
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=88.96 E-value=0.56 Score=51.25 Aligned_cols=91 Identities=22% Similarity=0.232 Sum_probs=52.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhc-------------ccCCEEEEh---------------HHHHHHHHHHH-ccC
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIED-------------KLFDKVVFV---------------ERAEKLRQRLK-NVK 227 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------~~F~~~~~~---------------~~~~~l~~~l~-~~k 227 (1698)
.+++.|.|+.|.||||+.+.++--.--. ..|+.+... ....++...+. -.+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~ 108 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADG 108 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999986432110 112222221 01112222221 147
Q ss_pred cEEEEEcCccccccc-------ccccCcccccccccCCCCCCeEEEEEeCchhhhh
Q 000302 228 RVLVILDNIWKLLNL-------DAVGIPFGDVKKERNDDRSRCTVLLTSRNRDVLC 276 (1698)
Q Consensus 228 ~~LlvlDdv~~~~~~-------~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v~~ 276 (1698)
+-|+++|+.....+. ..+...+. ..|+.+|++|...+++.
T Consensus 109 ~~lvllDE~~~gt~~~~~~~l~~~il~~l~---------~~~~~~i~~TH~~~l~~ 155 (204)
T cd03282 109 DSLVLIDELGRGTSSADGFAISLAILECLI---------KKESTVFFATHFRDIAA 155 (204)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHH---------hcCCEEEEECChHHHHH
Confidence 889999998443211 11212222 24889999999988776
No 485
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=88.93 E-value=0.34 Score=55.91 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=23.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 178 GMIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 178 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
++|+|.|-||+||||+|..++.....
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~ 28 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSN 28 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 68999999999999999999987653
No 486
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=88.91 E-value=0.31 Score=48.08 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
.+-|.|.|-+|+||||+|++++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3568899999999999999999653
No 487
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=88.83 E-value=0.77 Score=49.28 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=32.0
Q ss_pred cccccchHHHHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHH
Q 000302 155 YEQFDSRMKIFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAM 199 (1698)
Q Consensus 155 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~ 199 (1698)
...++|.+..+..+.-+... ..=|.++|+.|+|||++|+.+..
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 45678988888777655444 35788999999999999999975
No 488
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=88.82 E-value=0.35 Score=47.80 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.|.|+|..|+|||||.+.+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 378999999999999999997543
No 489
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=88.81 E-value=0.76 Score=52.81 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=36.8
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCEEEEh---HHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDKVVFV---ERAEKLRQRLK 224 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~---~~~~~l~~~l~ 224 (1698)
.-+++.|+|.+|+|||++|.++....... ...++|+ +..+.+.+...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~~~l~~~~~ 71 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESPEELLENAR 71 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCHHHHHHHHH
Confidence 45799999999999999999999887754 7888888 44455554443
No 490
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=88.78 E-value=0.67 Score=55.22 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=37.9
Q ss_pred ccccchHHHHHHHHHHHhc---------C-----CceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 156 EQFDSRMKIFQNIMEVLKD---------T-----NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 156 ~~~~gr~~~~~~l~~~l~~---------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
..++|.+..++.+..++.. . ..+-|.++|+.|+||||+|+.++....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999988877742 0 136789999999999999999998753
No 491
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=88.77 E-value=0.29 Score=54.39 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=76.7
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHhh--cc-----------cCCEEEEh---------------HHHHHHHHHHH-cc
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVIE--DK-----------LFDKVVFV---------------ERAEKLRQRLK-NV 226 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~-----------~F~~~~~~---------------~~~~~l~~~l~-~~ 226 (1698)
+.+++.|.|+.|.||||+.+.++--.-. -. .|+.+.-. ....++..-++ -.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~ 108 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAILKSAT 108 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHHHHHHHHHHHHHhCC
Confidence 4579999999999999999997743110 00 12221110 11112222221 14
Q ss_pred CcEEEEEcCc---ccccccccccCcc-cccccccCCCCCCeEEEEEeCchhhhhcc--cCCcceEEccCCCHH--HHHHH
Q 000302 227 KRVLVILDNI---WKLLNLDAVGIPF-GDVKKERNDDRSRCTVLLTSRNRDVLCND--MNSQKFFLIEVLSYE--EAWCL 298 (1698)
Q Consensus 227 k~~LlvlDdv---~~~~~~~~~~~~~-~~~~~~~~~~~~g~kilvTtR~~~v~~~~--~~~~~~~~l~~L~~~--e~~~L 298 (1698)
++-|+++|.. .+..+...+...+ .. .. ...|+.+|+||...++.... .......++.....+ +.. .
T Consensus 109 ~~sLvLLDEp~~gT~~lD~~~~~~~il~~----l~-~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~-~ 182 (222)
T cd03285 109 ENSLIIIDELGRGTSTYDGFGLAWAIAEY----IA-TQIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL-T 182 (222)
T ss_pred CCeEEEEecCcCCCChHHHHHHHHHHHHH----HH-hcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE-e
Confidence 7889999999 3333222111111 00 00 23477899999877665421 111112222211111 110 1
Q ss_pred HHHHhCCCCCCCchHHHHHHHHHHhCCChHHHHHHHHHHhc
Q 000302 299 FEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKN 339 (1698)
Q Consensus 299 f~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~ 339 (1698)
|..+....... ...|-++|+++ |+|-.+..-|..+..
T Consensus 183 ~~Y~l~~G~~~---~s~a~~~a~~~-g~p~~vi~~A~~~~~ 219 (222)
T cd03285 183 MLYKVEKGACD---QSFGIHVAELA-NFPKEVIEMAKQKAL 219 (222)
T ss_pred EEEEEeeCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 11111111111 34577888887 999988887776643
No 492
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.74 E-value=0.98 Score=51.66 Aligned_cols=37 Identities=27% Similarity=0.352 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 164 IFQNIMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 164 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
..+.+.+++ .....+|.|.|+.|+||||++..+....
T Consensus 68 ~~~~l~~~~-~~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 68 NLEIFRKLL-EKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred HHHHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 334444444 3345689999999999999999887655
No 493
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=88.65 E-value=0.51 Score=57.66 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
+...++|+|..|+|||||++.+....
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34688999999999999999988643
No 494
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=88.63 E-value=0.42 Score=45.10 Aligned_cols=25 Identities=44% Similarity=0.598 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhh
Q 000302 179 MIGVYGVNGVGKTTLVKQIAMQVIE 203 (1698)
Q Consensus 179 vi~I~G~gGiGKTtLa~~v~~~~~~ 203 (1698)
++.+.|.+|+||||++..++...+.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988753
No 495
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=88.63 E-value=0.8 Score=52.04 Aligned_cols=56 Identities=25% Similarity=0.223 Sum_probs=43.7
Q ss_pred CcccccchHHHHH---HHHHHHhcC--CceEEEEEcCCCchHHHHHHHHHHHHhhcccCCE
Q 000302 154 AYEQFDSRMKIFQ---NIMEVLKDT--NVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK 209 (1698)
Q Consensus 154 ~~~~~~gr~~~~~---~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 209 (1698)
...+|+|..++.+ -|++++... .-+.|-|+|++|.|||+||-.+++..-.+-.|..
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 3467899776554 466777754 3579999999999999999999999877666754
No 496
>PRK15453 phosphoribulokinase; Provisional
Probab=88.63 E-value=0.45 Score=53.53 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
+..+|+|.|.+|+||||+|+.+++...
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999997553
No 497
>PRK13948 shikimate kinase; Provisional
Probab=88.62 E-value=0.43 Score=50.92 Aligned_cols=26 Identities=19% Similarity=0.352 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCchHHHHHHHHHHHH
Q 000302 176 NVGMIGVYGVNGVGKTTLVKQIAMQV 201 (1698)
Q Consensus 176 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 201 (1698)
....|.++||.|+||||+++.+++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999875
No 498
>PRK13946 shikimate kinase; Provisional
Probab=88.60 E-value=0.36 Score=52.04 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHh
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVI 202 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 202 (1698)
.+.|.++|+.|+||||+|+.+++...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998763
No 499
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.56 E-value=0.88 Score=55.98 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCchHHHHHHHHHHHHhhc
Q 000302 177 VGMIGVYGVNGVGKTTLVKQIAMQVIED 204 (1698)
Q Consensus 177 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 204 (1698)
..||+++|+.|+||||++..++.....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~ 283 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMR 283 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHh
Confidence 3699999999999999999999876433
No 500
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=88.56 E-value=1.6 Score=46.53 Aligned_cols=97 Identities=21% Similarity=0.257 Sum_probs=60.8
Q ss_pred HHHHHhcCCceEEEEEcCCCchHHHHHHHHHHHHhhc-ccC--CEEEEh----------------H------------HH
Q 000302 168 IMEVLKDTNVGMIGVYGVNGVGKTTLVKQIAMQVIED-KLF--DKVVFV----------------E------------RA 216 (1698)
Q Consensus 168 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F--~~~~~~----------------~------------~~ 216 (1698)
++..+-.....-.-|.|++|+|||||.+.++.-.... +.| ..+..+ + .+
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~ 207 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKA 207 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHH
Confidence 4444444454557799999999999999999866543 233 223333 0 11
Q ss_pred HHHHHHHHccCcEEEEEcCcccccccccccCcccccccccCCCCCCeEEEEEeCchhh
Q 000302 217 EKLRQRLKNVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRDV 274 (1698)
Q Consensus 217 ~~l~~~l~~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~~~~~~~~g~kilvTtR~~~v 274 (1698)
+-++..++.--.=.+|+|.+...++-..+..+ -+.|-+++.|..-..+
T Consensus 208 ~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta----------~~~GVkli~TaHG~~i 255 (308)
T COG3854 208 EGMMMAIRSMSPEVIIVDEIGTEEDALAILTA----------LHAGVKLITTAHGNGI 255 (308)
T ss_pred HHHHHHHHhcCCcEEEEeccccHHHHHHHHHH----------HhcCcEEEEeeccccH
Confidence 22233333335668999999988776665444 4678888888765443
Done!