Query 000302
Match_columns 1698
No_of_seqs 561 out of 6529
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 17:37:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000302.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_79-83//hhsearch_pdb/000302hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 386.8 11.6 278 159-467 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 356.3 25.3 285 151-465 119-452 (1249)
3 3rgz_A Protein brassinosteroid 1.0 1 1 324.7 34.7 105 531-635 51-163 (768)
4 1vt4_I APAF-1 related killer D 1.0 1 1 316.4 17.8 253 157-458 129-436 (1221)
5 3rgz_A Protein brassinosteroid 1.0 1 1 311.5 32.7 150 504-666 50-211 (768)
6 1z6t_A APAF-1, apoptotic prote 1.0 1 1 295.2 26.5 280 152-463 120-450 (591)
7 1ziw_A TOLL-like receptor 3; i 1.0 1 1 284.0 34.6 128 530-666 25-156 (680)
8 1ziw_A TOLL-like receptor 3; i 1.0 1 1 278.7 37.0 145 487-635 9-157 (680)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 264.5 31.3 129 530-666 32-164 (606)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 263.7 33.0 128 530-666 33-164 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=386.85 Aligned_cols=278 Identities=14% Similarity=0.195 Sum_probs=223.3
Q ss_pred CCHHHHHHHHHHHHHCC---CCEEEEEECCCCCHHHHHHHHHHH--HHHHCCCCCEEEEH---H----------------
Q ss_conf 43399999999998239---953999995898509999999999--98640169999874---8----------------
Q 000302 159 DSRMKIFQNIMEVLKDT---NVGMIGVYGVNGVGKTTLVKQIAM--QVIEDKLFDKVVFV---E---------------- 214 (1698)
Q Consensus 159 ~gr~~~~~~l~~~L~~~---~~~vi~i~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~~~---~---------------- 214 (1698)
+||+.++++|.++|.+. +.++|+|+||||+||||||+++|+ +.+++.+|++++|+ .
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 78417999999987251578962899986999988999999998406987466995799997898787999999999999
Q ss_pred --------------------HHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHH
Q ss_conf --------------------8999999997367-1999992933101112125766664334689999739999808513
Q 000302 215 --------------------RAEKLRQRLKNVK-RVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRNRD 273 (1698)
Q Consensus 215 --------------------~~~~l~~~l~~~k-~~LiVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~gs~ilvTtr~~~ 273 (1698)
....+++.+. ++ |+||||||||+..++ .++. ..||+||||||++.
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-----~~~~--------~~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-----RWAQ--------ELRLRCLVTTRDVE 276 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-----HHHH--------HTTCEEEEEESBGG
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCHHH-----CCCC--------CCCCEEEEECCCHH
T ss_conf 853755345555331469999999999976-898489999799971441-----5432--------69988999749779
Q ss_pred HHHCCCC-CCCEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 2210168-862398147999999999999838998887349999999999199807999999998217913599999999
Q 000302 274 VLCNDMN-SQKFFLIEVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWNDSLERL 352 (1698)
Q Consensus 274 v~~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~L~~~~~~~w~~~~~~l 352 (1698)
|+. .++ ....|+|++|++++||+||.+.++....++++++++.+|+++|+|+||||+++|+.|+.+ .|+.+ +.+
T Consensus 277 v~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~---~w~~~-~~l 351 (549)
T 2a5y_B 277 ISN-AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK---TFEKM-AQL 351 (549)
T ss_dssp GGG-GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS---SHHHH-HHH
T ss_pred HHH-HCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC---HHHHH-HHH
T ss_conf 999-7088973898999898999999998744899855689999999999599839999999984434---48999-875
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCCCCC--
Q ss_conf 702343247642789999999881289167999998-----------85135899988998999997622--866665--
Q 000302 353 RNSTSRQIHGMEENVYSSIELSYSFLKSEEEKSMFR-----------LCALRKDGSPIPIDDLMRYGIGL--GLFSNV-- 417 (1698)
Q Consensus 353 ~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl-----------~~a~fp~~~~i~~~~li~~w~~~--g~~~~~-- 417 (1698)
..... .. ....+..++.+||++||++ +|.||+ |||+||+++.|+ +++|+|+ ||+...
T Consensus 352 ~~~l~-~~--~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~ 423 (549)
T 2a5y_B 352 NNKLE-SR--GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEE 423 (549)
T ss_dssp HHHHH-HH--CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------
T ss_pred HHHHH-CC--CHHHHHHHHHCCCCCCCHH-HHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCC
T ss_conf 78761-36--4777898975162022679-99997526522336743235608997666----53311013550026778
Q ss_pred -CCHHHHHHHHHHHHHHHHHCCCCCCCCC---CEEEECHHHHHHHHHHHCCCCE
Q ss_conf -4089999999999999973334325897---8099856999999997302565
Q 000302 418 -RTSEAARNRVYTLVDNLKASSLLLDGDK---DEVKLHDIIYAVAVSIARDEFM 467 (1698)
Q Consensus 418 -~~~~~~~~~~~~~~~~L~~~~ll~~~~~---~~~~mHdlvr~~a~~~~~~e~~ 467 (1698)
.+.+++++ ++++|+++||++.... .+|+|||+||+||+.++.+++.
T Consensus 424 ~~~~~~~~~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 424 EQLDDEVAD----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCCTHHHHH----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCCHHHHHH----HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 999999999----99999875883671479804999676999999999889899
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=356.33 Aligned_cols=285 Identities=22% Similarity=0.327 Sum_probs=228.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCCCCHHHHHHHHHHHHHHH-CC-CCCEEEEH-------------
Q ss_conf 77875454433999999999982--399539999958985099999999999864-01-69999874-------------
Q 000302 151 SYTAYEQFDSRMKIFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIE-DK-LFDKVVFV------------- 213 (1698)
Q Consensus 151 ~~~~~~~~~gr~~~~~~l~~~L~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~-~F~~~~~~------------- 213 (1698)
.|.....|+||+.++++|.++|. +++.++|+|+||||+||||||+++|++.+. .. .|+.++|+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHH
T ss_conf 79998641257999999999986135887779999189888889999986075678862788179999788572679999
Q ss_pred -----------------------HHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf -----------------------889999999973-67199999293310111212576666433468999973999980
Q 000302 214 -----------------------ERAEKLRQRLKN-VKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTS 269 (1698)
Q Consensus 214 -----------------------~~~~~l~~~l~~-~k~~LiVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~gs~ilvTt 269 (1698)
...+.++..+.. ++|+||||||+|+..+|+.+ ..||+||+||
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------------~~~~~ilvTt 264 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------------DNQCQILLTT 264 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------------CSSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH--------------CCCCEEEEEC
T ss_conf 99999986553033347887778999999999735678789999567997788763--------------6897899992
Q ss_pred CCHHHHHCCCCCCCEEECCC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 85132210168862398147-99999999999983899888734999999999919980799999999821791359999
Q 000302 270 RNRDVLCNDMNSQKFFLIEV-LSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWNDS 348 (1698)
Q Consensus 270 r~~~v~~~~~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~L~~~~~~~w~~~ 348 (1698)
|++.++...++....+.+++ |+++++|+||...++.. .++..+.+++|+++|+|+||||+++|++|+.++ ..|+++
T Consensus 265 R~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~ 341 (1249)
T 3sfz_A 265 RDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYY 341 (1249)
T ss_dssp SSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHH
T ss_pred CCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC--HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHH
T ss_conf 77899876348843798258888788999999865798--134838899999984997799999999862480-579999
Q ss_pred HHHHHCCCCCCC----CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 999970234324----7642789999999881289167999998851358999889989999976228666654089999
Q 000302 349 LERLRNSTSRQI----HGMEENVYSSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAAR 424 (1698)
Q Consensus 349 ~~~l~~~~~~~~----~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~ 424 (1698)
++.+........ ......+..++.+||+.|+++ +|.||+|||+||+++.|+++.++.+|.++ +
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~ 408 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLE------------T 408 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCC------------H
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHH-HHHHHHHHCCCCCCCEECHHHHHHHHCCC------------H
T ss_conf 9998650443034655644677999999899867999-99999972813799751899999885898------------8
Q ss_pred HHHHHHHHHHHHCCCCCCCCC---CEEEECHHHHHHHHHHHCCC
Q ss_conf 999999999973334325897---80998569999999973025
Q 000302 425 NRVYTLVDNLKASSLLLDGDK---DEVKLHDIIYAVAVSIARDE 465 (1698)
Q Consensus 425 ~~~~~~~~~L~~~~ll~~~~~---~~~~mHdlvr~~a~~~~~~e 465 (1698)
..+..++++|++++|++.... .+|+||++||+||+..+.++
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 89999999997446338963798118996689999987450678
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=324.66 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=47.7
Q ss_pred CEEEEEECCCCCCC----CCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCEEECCCCCCC-CCCH--HHHCCCCCCE
Q ss_conf 00699951777454----7723348876439980696589-9200124345644441887777-3556--7322334628
Q 000302 531 ELRVVHFTRTCFLS----LPSSLVCLISLRTLSLEGCQVG-DVAIVGQLKKLEILSFRNSDIQ-QLPR--EIGQLVQLRL 602 (1698)
Q Consensus 531 ~LrvL~Ls~~~~~~----lp~~l~~L~~Lr~L~L~~~~i~-~~~~i~~L~~L~~L~L~~~~i~-~lP~--~i~~L~~L~~ 602 (1698)
+++.|+|+++.+.. +|.++..+++|++++++.+.+. .+..++++.+|++|+++++.+. .+|. .++++++|++
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 130 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCE
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCE
T ss_conf 27898778998677557669657316802246786888678703324578899898989857870789678727889998
Q ss_pred ECCCCCCCCCCCCCHHHCCCCCCCEECCCCCCC
Q ss_conf 633475453202801120275675210367655
Q 000302 603 LDLRNCRRLQAIAPNVISKLSRLEELYMGDSFS 635 (1698)
Q Consensus 603 L~L~~~~~l~~ip~~~i~~L~~L~~L~l~~~~~ 635 (1698)
|++++|.-...+|...++++++|++|++++|.+
T Consensus 131 L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp EECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred EECCCCCCCCCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 989688267747977856388999898979835
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=316.38 Aligned_cols=253 Identities=20% Similarity=0.236 Sum_probs=201.9
Q ss_pred CCCCHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCE-EEEH---------HH----------
Q ss_conf 544339999999999823-99539999958985099999999999864016999-9874---------88----------
Q 000302 157 QFDSRMKIFQNIMEVLKD-TNVGMIGVYGVNGVGKTTLVKQIAMQVIEDKLFDK-VVFV---------ER---------- 215 (1698)
Q Consensus 157 ~~~gr~~~~~~l~~~L~~-~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~~~---------~~---------- 215 (1698)
..+||+.++++|.++|.+ ++.++|+|+||||+||||||+++|++.+++.+|+. ++|+ ..
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 77892899999999974358971899976999667999999997149887489938999828999999999999999862
Q ss_pred ----------------------HHHHHHHHH--CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf ----------------------999999997--36719999929331011121257666643346899997399998085
Q 000302 216 ----------------------AEKLRQRLK--NVKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSRN 271 (1698)
Q Consensus 216 ----------------------~~~l~~~l~--~~k~~LiVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~gs~ilvTtr~ 271 (1698)
.+.++..+. .++|+||||||+|+...|+.+ + .||+||||||+
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~----------pGSRILVTTRd 274 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----N----------LSCKILLTTRF 274 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----H----------SSCCEEEECSC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH----C----------CCEEEEEECCC
T ss_conf 272102200134679999999999999999850478879987186818999864----7----------98299994437
Q ss_pred HHHHHCCCCCCCEEECC------CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC--CH
Q ss_conf 13221016886239814------79999999999998389988873499999999991998079999999982179--13
Q 000302 272 RDVLCNDMNSQKFFLIE------VLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKR--LY 343 (1698)
Q Consensus 272 ~~v~~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~L~~~~--~~ 343 (1698)
+.++. .+.....+.++ +|+++|||+||.+..+.. . .++..+ .|+|+||||+++|+.|+++. ..
T Consensus 275 ~~Va~-~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 275 KQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp SHHHH-HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHH
T ss_pred HHHHH-HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC--H---HHHHHH---HHCCCHHHHHHHHHHHHCCCCCHH
T ss_conf 37998-66897089946865568969999999999974998--8---999999---969899999999999848899799
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 5999999997023432476427899999998812891679-999988513589998899899999762286666540899
Q 000302 344 VWNDSLERLRNSTSRQIHGMEENVYSSIELSYSFLKSEEE-KSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEA 422 (1698)
Q Consensus 344 ~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~l-k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~ 422 (1698)
.|+.. ....+..++.+||+.|+++ . |+||++||+||+++.|+.+.++.+|+++|. +
T Consensus 346 eW~~~--------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e- 402 (1221)
T 1vt4_I 346 NWKHV--------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S- 402 (1221)
T ss_dssp HHHHC--------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H-
T ss_pred HHHCC--------------CHHHHHHHHHHHHHHCCHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCH-------H-
T ss_conf 98669--------------8618999999999848899-99999999717799998779999987667788-------9-
Q ss_pred HHHHHHHHHHHHHHCCCCCCCC-CCEEEECHHHHHHH
Q ss_conf 9999999999997333432589-78099856999999
Q 000302 423 ARNRVYTLVDNLKASSLLLDGD-KDEVKLHDIIYAVA 458 (1698)
Q Consensus 423 ~~~~~~~~~~~L~~~~ll~~~~-~~~~~mHdlvr~~a 458 (1698)
.+..++++|+++||++..+ ..+|+|||++++++
T Consensus 403 ---dAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 ---DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp ---HHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred ---HHHHHHHHHHHHCCEEEECCCCEEEEHHHHHHHH
T ss_conf ---9999999999619889868999898609999985
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=311.47 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=108.7
Q ss_pred CCEEEEEEECCCCCCCC---CCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCC--CCCCCCC
Q ss_conf 97279999012578876---6824642688006999517774547723348876439980696589--920--0124345
Q 000302 504 PKLSLFLLFAKYDSSLK---IPDLFFEGMNELRVVHFTRTCFLSLPSSLVCLISLRTLSLEGCQVG--DVA--IVGQLKK 576 (1698)
Q Consensus 504 ~~L~~L~l~~~~~~~~~---~~~~~f~~l~~LrvL~Ls~~~~~~lp~~l~~L~~Lr~L~L~~~~i~--~~~--~i~~L~~ 576 (1698)
.+++.+.+.+. ..... ++. .|..+++|++++++.+.+..+|..|+.+.+|++|+|++|.+. .|. .++++.+
T Consensus 50 ~~v~~L~L~~~-~l~g~~~~l~~-~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSK-PLNVGFSAVSS-SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTTS-CCCEEHHHHHH-HTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CCEEEEECCCC-CCCCCCCCCCH-HHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCC
T ss_conf 92789877899-86775576696-57316802246786888678703324578899898989857870789678727889
Q ss_pred CCEEECCCCCCC-CCCHHH-HCCCCCCEECCCCCCCCCCCCCHH---HCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 644441887777-355673-223346286334754532028011---202756752103676554321248876553410
Q 000302 577 LEILSFRNSDIQ-QLPREI-GQLVQLRLLDLRNCRRLQAIAPNV---ISKLSRLEELYMGDSFSQWEKVEGGSNASLVEL 651 (1698)
Q Consensus 577 L~~L~L~~~~i~-~lP~~i-~~L~~L~~L~L~~~~~l~~ip~~~---i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 651 (1698)
|++|++++|.+. ..|..+ .++++|++|++++| .+...+... ++++++|++|++.+|.+. . ....
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~--------~--~~~~ 196 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKIS--------G--DVDV 196 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEE--------S--CCBC
T ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCC-CCCCCCCHHHHHHCCCCCCCEEECCCCCCC--------C--CCCC
T ss_conf 9989896882677479778563889998989798-358858715566435898898989788034--------6--5784
Q ss_pred CCCCCCCEEEEEECC
Q ss_conf 799999889999414
Q 000302 652 KGLSKLTTLEIHIRD 666 (1698)
Q Consensus 652 ~~L~~L~~L~l~~~~ 666 (1698)
+.+++|+.|++..+.
T Consensus 197 ~~l~~L~~L~Ls~n~ 211 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNN 211 (768)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCC
T ss_conf 547868989892882
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=295.22 Aligned_cols=280 Identities=22% Similarity=0.325 Sum_probs=217.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCCCCHHHHHHHHHHHHHHH-CCCC-CEEEEHH-------------
Q ss_conf 7875454433999999999982--399539999958985099999999999864-0169-9998748-------------
Q 000302 152 YTAYEQFDSRMKIFQNIMEVLK--DTNVGMIGVYGVNGVGKTTLVKQIAMQVIE-DKLF-DKVVFVE------------- 214 (1698)
Q Consensus 152 ~~~~~~~~gr~~~~~~l~~~L~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~~~~------------- 214 (1698)
|.....|+||+.+++++.+++. +++.++|+|+||||+||||||++++++... ..+| +.++|+.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l 199 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKL 199 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHH
T ss_pred CCCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCCCHHHHHHHH
T ss_conf 99987140529999999999860368884699976998988999999983556888528996599977877668899999
Q ss_pred -----------------------HHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf -----------------------89999999973-671999992933101112125766664334689999739999808
Q 000302 215 -----------------------RAEKLRQRLKN-VKRVLVILDNIWKLLNLDAVGIPFGDVKKERNDDRSRCTVLLTSR 270 (1698)
Q Consensus 215 -----------------------~~~~l~~~l~~-~k~~LiVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~gs~ilvTtr 270 (1698)
..+.++..+.. .+++||||||+|+...++.+ ..|++||+|||
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------------~~~~~ilvTsR 265 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------------DSQCQILLTTR 265 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------------CSSCEEEEEES
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH--------------CCCCEEEEECC
T ss_conf 9999985035565567998899999999999706799869998589987999876--------------37986999898
Q ss_pred CHHHHHCCCCCCCEEEC---CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 51322101688623981---479999999999998389988873499999999991998079999999982179135999
Q 000302 271 NRDVLCNDMNSQKFFLI---EVLSYEEAWCLFEKIVGDSAKASDFRVIADEIVRRCGGLPVAIKTIANALKNKRLYVWND 347 (1698)
Q Consensus 271 ~~~v~~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~L~~~~~~~w~~ 347 (1698)
...++.. +. ...+.+ ++|+++++++||...++.. .....+.+.+|+++|+|+|+||+.+|++++.+. ..|+.
T Consensus 266 ~~~~~~~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~ 340 (591)
T 1z6t_A 266 DKSVTDS-VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEY 340 (591)
T ss_dssp CGGGGTT-CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHH
T ss_pred CCHHHHH-CC-CCCEEEECCCCCCHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHH
T ss_conf 8177773-48-9826861588999899999999871898--310459999999995898379999999984484-35999
Q ss_pred HHHHHHCCCCCCC----CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 9999970234324----764278999999988128916799999885135899988998999997622866665408999
Q 000302 348 SLERLRNSTSRQI----HGMEENVYSSIELSYSFLKSEEEKSMFRLCALRKDGSPIPIDDLMRYGIGLGLFSNVRTSEAA 423 (1698)
Q Consensus 348 ~~~~l~~~~~~~~----~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~ 423 (1698)
+++.+........ ......+..++..||+.|+++ .|.||+++|+||++..|+...++.+|.+. .+
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------~~-- 409 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME--------TE-- 409 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC--------HH--
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHH-HHHHHHHCCCCCCCCCCCHHHHHHHHCCC--------HH--
T ss_conf 99999886898765114654378999999999868999-99999974556799850899999996658--------89--
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC---CEEEECHHHHHHHHHHHC
Q ss_conf 9999999999973334325897---809985699999999730
Q 000302 424 RNRVYTLVDNLKASSLLLDGDK---DEVKLHDIIYAVAVSIAR 463 (1698)
Q Consensus 424 ~~~~~~~~~~L~~~~ll~~~~~---~~~~mHdlvr~~a~~~~~ 463 (1698)
.+..++++|++++|++.... ..|+||+++|+++.....
T Consensus 410 --~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 410 --EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp --HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred --HHHHHHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf --99999999985958688548985679976899999986535
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=284.02 Aligned_cols=128 Identities=19% Similarity=0.242 Sum_probs=73.8
Q ss_pred CCEEEEEECCCCCCCCCC-CCCCCCCCCEEECCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCH-HHHCCCCCCEECC
Q ss_conf 800699951777454772-33488764399806965899--2001243456444418877773556-7322334628633
Q 000302 530 NELRVVHFTRTCFLSLPS-SLVCLISLRTLSLEGCQVGD--VAIVGQLKKLEILSFRNSDIQQLPR-EIGQLVQLRLLDL 605 (1698)
Q Consensus 530 ~~LrvL~Ls~~~~~~lp~-~l~~L~~Lr~L~L~~~~i~~--~~~i~~L~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~L 605 (1698)
+.+++|+++++.+..+|. .|..+.+|++|++++|.+.. +..++++.+|++|+++++.+..+|. .++.+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 88768889899778759788717876758878899648569778740667688889998567568545303888898989
Q ss_pred CCCCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECC
Q ss_conf 4754532028011202756752103676554321248876553410799999889999414
Q 000302 606 RNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRD 666 (1698)
Q Consensus 606 ~~~~~l~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 666 (1698)
++| .+..+++..++++++|++|++++|.+. ...+..++++++|+.|++..+.
T Consensus 105 ~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 105 MSN-SIQKIKNNPFVKQKNLITLDLSHNGLS--------STKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp CSS-CCCCCCSCTTTTCTTCCEEECCSSCCS--------CCCCCSSSCCTTCCEEECCSSC
T ss_pred CCC-CCCCCCHHHCCCCCCCCEEECCCCCCC--------CCCCHHHCCCCCCCEEECCCCC
T ss_conf 899-668539667415678888989899524--------6672111245567779745884
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=278.71 Aligned_cols=145 Identities=17% Similarity=0.243 Sum_probs=89.6
Q ss_pred EECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCC-CCCCCCCCCCCEEECCCCCC
Q ss_conf 98779998978766689972799990125788766824642688006999517774547-72334887643998069658
Q 000302 487 ISLPNRDIDELPERLECPKLSLFLLFAKYDSSLKIPDLFFEGMNELRVVHFTRTCFLSL-PSSLVCLISLRTLSLEGCQV 565 (1698)
Q Consensus 487 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~f~~l~~LrvL~Ls~~~~~~l-p~~l~~L~~Lr~L~L~~~~i 565 (1698)
+...+..+..+|..+. ++++.|.+.++ ....++...|.++++|++|+++++.+..+ |..|..+.+|++|++++|.+
T Consensus 9 ~~cs~~~L~~ip~~~~-~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDLP-TNITVLNLTHN--QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp EECCSSCCSSCCSCSC-TTCSEEECCSS--CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred EECCCCCCCCCCCCCC-CCCCEEECCCC--CCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCC
T ss_conf 4877798052641248-88768889899--77875978871787675887889964856977874066768888999856
Q ss_pred CCC--CCCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCEECCCCCCCCCCCCCHHHCCCCCCCEECCCCCCC
Q ss_conf 992--00124345644441887777355-67322334628633475453202801120275675210367655
Q 000302 566 GDV--AIVGQLKKLEILSFRNSDIQQLP-REIGQLVQLRLLDLRNCRRLQAIAPNVISKLSRLEELYMGDSFS 635 (1698)
Q Consensus 566 ~~~--~~i~~L~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~L~~~~~l~~ip~~~i~~L~~L~~L~l~~~~~ 635 (1698)
..+ ..++++.+|++|++++|.+..+| ..++++++|++|++++| .+..++...++++++|++|++.++.+
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCC-CCCCCCCHHHCCCCCCCEEECCCCCC
T ss_conf 7568545303888898989899668539667415678888989899-52466721112455677797458843
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=264.47 Aligned_cols=129 Identities=19% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCEEEEEECCCCCCCCC-CCCCCCCCCCEEECCCCCCCC--CCCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEECC
Q ss_conf 80069995177745477-233488764399806965899--20012434564444188777735-567322334628633
Q 000302 530 NELRVVHFTRTCFLSLP-SSLVCLISLRTLSLEGCQVGD--VAIVGQLKKLEILSFRNSDIQQL-PREIGQLVQLRLLDL 605 (1698)
Q Consensus 530 ~~LrvL~Ls~~~~~~lp-~~l~~L~~Lr~L~L~~~~i~~--~~~i~~L~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~L 605 (1698)
+.+++|+++++.+..++ ..|..+.+|++|++++|.+.. +..++++.+|++|++++|.+..+ |..++++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECC
Q ss_conf 4754532028011202756752103676554321248876553410799999889999414
Q 000302 606 RNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRD 666 (1698)
Q Consensus 606 ~~~~~l~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 666 (1698)
++| .+..++...++++.+|++|++++|.+. ....+..++++++|+.|++..+.
T Consensus 112 ~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 112 VET-KLASLESFPIGQLITLKKLNVAHNFIH-------SCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp TTS-CCCCSSSSCCTTCTTCCEEECCSSCCC-------CCCCCGGGGTCTTCCEEECCSSC
T ss_pred CCC-CCCCCCCCCCCCCCCCCEEECCCCCCC-------CEECHHHHHHCCCCCEEECCCCC
T ss_conf 377-555445113489887798968788523-------25306867326777788766885
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=263.74 Aligned_cols=128 Identities=18% Similarity=0.233 Sum_probs=75.8
Q ss_pred CCEEEEEECCCCCCCC-CCCCCCCCCCCEEECCCCCCCC--CCCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEECC
Q ss_conf 8006999517774547-7233488764399806965899--20012434564444188777735-567322334628633
Q 000302 530 NELRVVHFTRTCFLSL-PSSLVCLISLRTLSLEGCQVGD--VAIVGQLKKLEILSFRNSDIQQL-PREIGQLVQLRLLDL 605 (1698)
Q Consensus 530 ~~LrvL~Ls~~~~~~l-p~~l~~L~~Lr~L~L~~~~i~~--~~~i~~L~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~L 605 (1698)
..+++|+++++.+..+ |.+|..+.+|++|++++|.+.. |..|+++.+|++|++++|.+..+ |..++.+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 86758981587347179667256766528978898355248511368433676448898565458655234421537652
Q ss_pred CCCCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECC
Q ss_conf 4754532028011202756752103676554321248876553410799999889999414
Q 000302 606 RNCRRLQAIAPNVISKLSRLEELYMGDSFSQWEKVEGGSNASLVELKGLSKLTTLEIHIRD 666 (1698)
Q Consensus 606 ~~~~~l~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 666 (1698)
++| .+..++...++++++|++|++++|.+. ......+..+++|+.|++..+.
T Consensus 113 ~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 113 IQT-GISSIDFIPLHNQKTLESLYLGSNHIS--------SIKLPKGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp TTS-CCSCGGGSCCTTCTTCCEEECCSSCCC--------CCCCCTTCCCTTCCEEECCSSC
T ss_pred CCC-CCCCCCCCHHCCCCCCCEEECCCCCCC--------CCCCCCCCCCCCCCEEECCCCC
T ss_conf 126-766578101223782238988798341--------1476545687656877765684
Done!