Query 000303
Match_columns 1697
No_of_seqs 4 out of 6
Neff 1.3
Searched_HMMs 13730
Date Tue Mar 26 18:18:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000303.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_79-83//hhsearch_scop/000303hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e0ca1 c.46.1.2 (A:1-135) Sul 4.2 87 0.0063 7.2 0.5 28 25-54 25-52 (135)
2 d1ci3m1 b.2.6.1 (M:1-169,M:232 3.8 79 0.0057 7.5 -0.5 34 1200-1244 151-184 (187)
3 d1tf5a3 c.37.1.19 (A:1-226,A:3 3.7 83 0.006 7.4 -0.5 11 788-798 97-107 (273)
4 d1e2wa1 b.2.6.1 (A:1-168,A:233 3.4 89 0.0065 7.2 -0.5 35 1200-1245 150-184 (187)
5 d2cx1a2 d.17.6.4 (A:1-90) Hypo 2.7 1.4E+02 0.01 6.0 -0.1 24 1257-1280 48-71 (90)
6 d2cs4a1 d.15.1.5 (A:8-91) Ras 2.7 1.5E+02 0.011 5.9 -0.0 18 531-548 9-26 (84)
7 d2hfqa1 d.375.1.1 (A:1-85) Hyp 2.7 1.5E+02 0.011 5.8 0.1 19 695-713 52-70 (85)
8 d2j0wa1 c.73.1.3 (A:3-294) Asp 2.4 1.7E+02 0.013 5.5 0.6 19 317-335 211-229 (292)
9 d2cdqa1 c.73.1.3 (A:25-328) As 2.3 1.8E+02 0.013 5.4 1.0 20 316-335 220-239 (304)
10 d1j6xa_ d.185.1.2 (A:) Autoind 2.2 28 0.002 10.1 -4.3 37 550-586 43-79 (151)
No 1
>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=4.21 E-value=87 Score=7.24 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=12.3
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCH
Q ss_conf 864456643010366420268667887301
Q 000303 25 SGHFDSTADETFSRELKKFQGTLNVPPDTV 54 (1697)
Q Consensus 25 ~~~~DaTADE~~~reLK~~~G~lN~PPet~ 54 (1697)
-+-+|....+-|.+ -..+|++|.|...+
T Consensus 25 ~viiDvR~~~ey~~--gHIpgA~~~~~~~~ 52 (135)
T d1e0ca1 25 LILVDLTSAARYAE--GHIPGARFVDPKRT 52 (135)
T ss_dssp EEEEECSCHHHHHH--CBSTTCEECCGGGG
T ss_pred EEEEECCCHHHHHC--CCCCCCCCCCHHHH
T ss_conf 38997988788852--66752213661543
No 2
>d1ci3m1 b.2.6.1 (M:1-169,M:232-249) Cytochrome f, large domain {Phormidium laminosum [TaxId: 32059]}
Probab=3.75 E-value=79 Score=7.49 Aligned_cols=34 Identities=38% Similarity=0.475 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 468878885210000138443035115899999888531022231
Q 000303 1200 DKGNEDRGPAMMAEEKSNENELLAVKDNSENKPSIGQEDSKHILQ 1244 (1697)
Q Consensus 1200 dkgnedrgpammaeeksnenellavkdnsenkpsigqedskhilq 1244 (1697)
--||..||-..-.-+|||- |--..||.|..-+||
T Consensus 151 vGgNRGRGQvYP~G~kSNN-----------NVGGFGQ~d~EiVLQ 184 (187)
T d1ci3m1 151 LGANRGRGQIYPTGEKSNN-----------NVGGFGQKDTEIVLQ 184 (187)
T ss_dssp EEEEESCCSBCTTSCBCSS-----------CCCEEEEEEEEEEEC
T ss_pred EECCCCCCCCCCCCCCCCC-----------CCCCCCCCCEEEEEC
T ss_conf 7055666536798754567-----------545557662389951
No 3
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=3.66 E-value=83 Score=7.36 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=3.6
Q ss_pred CCCCCCCCCCH
Q ss_conf 21124687301
Q 000303 788 VAERSEGENDI 798 (1697)
Q Consensus 788 ~aE~SkGe~d~ 798 (1697)
.|||.-|||-+
T Consensus 97 iaem~TGEGKT 107 (273)
T d1tf5a3 97 IAEMKTGEGKT 107 (273)
T ss_dssp EEECCTTSCHH
T ss_pred HEEECCCCCCH
T ss_conf 30206887510
No 4
>d1e2wa1 b.2.6.1 (A:1-168,A:233-251) Cytochrome f, large domain {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.39 E-value=89 Score=7.18 Aligned_cols=35 Identities=34% Similarity=0.424 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 4688788852100001384430351158999998885310222315
Q 000303 1200 DKGNEDRGPAMMAEEKSNENELLAVKDNSENKPSIGQEDSKHILQE 1245 (1697)
Q Consensus 1200 dkgnedrgpammaeeksnenellavkdnsenkpsigqedskhilqe 1245 (1697)
--||..||-..-.-+|||- |--..||.|..-+||.
T Consensus 150 vGgNRGRGQvYP~G~kSNN-----------NVGGFGQ~e~EiVLQ~ 184 (187)
T d1e2wa1 150 FGGNRGRGQVYPDGKKSNF-----------NVGGFGQAETEIVLQN 184 (187)
T ss_dssp EEEEESCCSBCTTSCBCSS-----------CCCEEEEEEEEEEECC
T ss_pred EECCCCCCCCCCCCCCCCC-----------CCCCCCCCCEEEEECC
T ss_conf 7055666636798754667-----------6455465521688317
No 5
>d2cx1a2 d.17.6.4 (A:1-90) Hypothetical protein APE0525, N-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=2.73 E-value=1.4e+02 Score=5.98 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 000367743333578996200013
Q 000303 1257 SVRSDENEESVVDADKSPCLMEIG 1280 (1697)
Q Consensus 1257 svrsdeneesvvdadkspclmeig 1280 (1697)
..|.|..+-.++..|.-|||.+..
T Consensus 48 kartdsgeyeiitvdgvpclfews 71 (90)
T d2cx1a2 48 KARTDSGEYEIITVDGVPCLFEWS 71 (90)
T ss_dssp EEECSSCEEEEEEETTEEEEEECT
T ss_pred EEECCCCCEEEEEECCCCEEEEEC
T ss_conf 760578836899965841788814
No 6
>d2cs4a1 d.15.1.5 (A:8-91) Ras association domain-containing protein 8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.73 E-value=1.5e+02 Score=5.93 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=9.3
Q ss_pred HHHHCCCCCCCCCCHHHH
Q ss_conf 863013222111212454
Q 000303 531 REIKNVSEVDEKTECAEV 548 (1697)
Q Consensus 531 R~~K~~sEv~~KTE~AEV 548 (1697)
.+.+-|+-|..+|-|++|
T Consensus 9 ge~r~V~GVt~~TTC~DV 26 (84)
T d2cs4a1 9 GVQRIVCGVTEVTTCQEV 26 (84)
T ss_dssp TEEECCSSBCSSSCHHHH
T ss_pred CEEEEEECCCCCCCHHHH
T ss_conf 907788688999728999
No 7
>d2hfqa1 d.375.1.1 (A:1-85) Hypothetical protein NE1680 {Nitrosomonas europaea [TaxId: 915]}
Probab=2.65 E-value=1.5e+02 Score=5.83 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=13.0
Q ss_pred CCCCEECCHHHHHHHHHCC
Q ss_conf 1352021238875533103
Q 000303 695 VNNAVFVRDEKAKENIQAE 713 (1697)
Q Consensus 695 v~naefv~deKa~enIQAa 713 (1697)
...--|||-+.|..+|+.+
T Consensus 52 ~~~C~FCHsE~A~~~V~~~ 70 (85)
T d2hfqa1 52 SEECRFCHSEKAPDEVIEA 70 (85)
T ss_dssp TTTBCCCEEEECCHHHHHH
T ss_pred HHHCCCCCCCCCCHHHHHH
T ss_conf 2105254676599899999
No 8
>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]}
Probab=2.40 E-value=1.7e+02 Score=5.53 Aligned_cols=19 Identities=37% Similarity=0.658 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCCCCCCCCH
Q ss_conf 6786333456788777890
Q 000303 317 DTQSVTPATDVSGVYEAEP 335 (1697)
Q Consensus 317 D~~SVT~a~D~S~~~E~~~ 335 (1697)
+...|+.-|||.|+|-+.|
T Consensus 211 ~A~~v~iwtDV~Gi~taDP 229 (292)
T d2j0wa1 211 HASRVDIWTDVPGIYTTDP 229 (292)
T ss_dssp TCSEEEEEESSSSEESSCT
T ss_pred HCHHHHHHCCCCCEEECHH
T ss_conf 0589998616752343632
No 9
>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=2.31 E-value=1.8e+02 Score=5.41 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCH
Q ss_conf 36786333456788777890
Q 000303 316 LDTQSVTPATDVSGVYEAEP 335 (1697)
Q Consensus 316 LD~~SVT~a~D~S~~~E~~~ 335 (1697)
|+...|+.-|||.|+|-+.|
T Consensus 220 l~A~~~~iwtDV~Gi~taDP 239 (304)
T d2cdqa1 220 LGLKEIQVWKDVDGVLTCDP 239 (304)
T ss_dssp HTCSEEEEEESSSSSBSSCT
T ss_pred HCCHHHHHHCCCCHHEECCC
T ss_conf 57569988537604214520
No 10
>d1j6xa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Helicobacter pylori [TaxId: 210]}
Probab=2.20 E-value=28 Score=10.06 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 1457955467844541000133563134755039864
Q 000303 550 AQNKNASDLHDIPVLDEEAGETEGKDLEEVIKTEPKG 586 (1697)
Q Consensus 550 ~~NKN~~~L~~I~vLd~Ea~~~EG~~Le~V~~~~Pk~ 586 (1697)
.||+..-.--++|-|+.-...---..++.||+|+|-|
T Consensus 43 qPN~e~m~~~~lHTlEHL~At~lRn~~d~iI~~gPMG 79 (151)
T d1j6xa_ 43 QPNRDHMDMPSLHSLEHLVAEIIRNHANYVVDWSPMG 79 (151)
T ss_dssp CTTTCCCCHHHHHHHHHHHHHHHHHHCSCEEEEEECT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 8884758982046999988888861879838878876
Done!